Query 002939
Match_columns 864
No_of_seqs 426 out of 4595
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 13:48:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002939.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002939hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 9.1E-61 2E-65 546.1 34.6 578 2-638 165-806 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.2E-58 4.8E-63 558.9 49.6 435 3-467 192-691 (1153)
3 PLN00113 leucine-rich repeat r 100.0 1.8E-33 4E-38 343.5 25.0 472 314-828 91-581 (968)
4 PLN00113 leucine-rich repeat r 100.0 3.3E-33 7.2E-38 341.2 24.2 471 316-829 69-558 (968)
5 PF00931 NB-ARC: NB-ARC domain 100.0 6.3E-31 1.4E-35 274.1 14.6 217 2-229 3-225 (287)
6 KOG4194 Membrane glycoprotein 99.9 1.3E-26 2.7E-31 237.2 6.4 375 366-845 80-466 (873)
7 KOG0444 Cytoskeletal regulator 99.9 2.4E-27 5.1E-32 244.0 -3.6 375 341-821 10-389 (1255)
8 KOG0472 Leucine-rich repeat pr 99.9 1.3E-27 2.8E-32 233.8 -6.6 452 314-805 66-539 (565)
9 KOG4194 Membrane glycoprotein 99.9 9.6E-26 2.1E-30 230.8 5.6 359 314-745 76-448 (873)
10 PLN03210 Resistant to P. syrin 99.9 9.8E-24 2.1E-28 257.1 22.3 362 338-784 532-909 (1153)
11 KOG0618 Serine/threonine phosp 99.9 7.1E-26 1.5E-30 244.6 1.8 433 318-829 23-487 (1081)
12 KOG0444 Cytoskeletal regulator 99.9 2.6E-26 5.7E-31 236.3 -3.3 378 314-745 5-395 (1255)
13 KOG0472 Leucine-rich repeat pr 99.9 7.6E-26 1.7E-30 221.5 -7.3 431 316-830 45-540 (565)
14 KOG0618 Serine/threonine phosp 99.9 5.3E-24 1.1E-28 230.3 -4.4 456 317-826 46-508 (1081)
15 PRK15387 E3 ubiquitin-protein 99.6 9.1E-16 2E-20 173.0 13.4 93 365-469 202-294 (788)
16 KOG4237 Extracellular matrix p 99.6 1.8E-17 4E-22 163.1 -1.3 302 321-667 51-357 (498)
17 PRK15387 E3 ubiquitin-protein 99.6 3E-15 6.4E-20 169.0 15.6 253 320-639 205-458 (788)
18 PRK15370 E3 ubiquitin-protein 99.6 2.1E-14 4.6E-19 163.4 14.6 136 317-468 179-315 (754)
19 PRK15370 E3 ubiquitin-protein 99.5 4.2E-14 9.1E-19 161.0 12.7 225 364-638 199-427 (754)
20 KOG4658 Apoptotic ATPase [Sign 99.5 5.9E-14 1.3E-18 162.3 9.4 135 327-466 512-651 (889)
21 KOG0617 Ras suppressor protein 99.5 1.7E-15 3.6E-20 131.7 -3.0 151 314-469 31-185 (264)
22 KOG0617 Ras suppressor protein 99.4 1.3E-14 2.7E-19 126.3 -1.9 161 328-493 23-189 (264)
23 KOG4237 Extracellular matrix p 99.4 9.8E-15 2.1E-19 144.1 -4.8 287 311-638 62-358 (498)
24 PRK04841 transcriptional regul 99.3 1.8E-10 3.9E-15 140.8 20.7 277 4-291 19-332 (903)
25 COG2909 MalT ATP-dependent tra 99.2 2.2E-10 4.7E-15 125.7 17.8 284 4-294 24-341 (894)
26 PF05729 NACHT: NACHT domain 99.2 1E-10 2.2E-15 111.0 12.9 142 17-177 1-164 (166)
27 TIGR03015 pepcterm_ATPase puta 99.2 1.8E-09 3.9E-14 111.2 22.5 179 14-210 41-242 (269)
28 cd00116 LRR_RI Leucine-rich re 99.2 9.9E-12 2.2E-16 132.1 2.2 112 358-470 17-150 (319)
29 cd00116 LRR_RI Leucine-rich re 99.1 1.5E-11 3.2E-16 130.8 2.0 102 368-470 2-121 (319)
30 KOG4341 F-box protein containi 99.1 2.4E-12 5.2E-17 128.7 -4.2 288 496-823 162-457 (483)
31 KOG4341 F-box protein containi 99.1 5.4E-12 1.2E-16 126.2 -2.9 313 499-851 139-460 (483)
32 KOG1259 Nischarin, modulator o 99.1 4.1E-11 8.9E-16 114.3 2.8 126 363-491 283-413 (490)
33 PF14580 LRR_9: Leucine-rich r 99.1 8.8E-11 1.9E-15 108.5 4.7 107 362-470 17-126 (175)
34 PF14580 LRR_9: Leucine-rich r 99.0 1.4E-10 3E-15 107.2 3.8 98 371-471 4-102 (175)
35 PF01637 Arch_ATPase: Archaeal 99.0 8.2E-10 1.8E-14 111.5 6.4 197 2-205 6-233 (234)
36 PRK00411 cdc6 cell division co 98.9 5.7E-08 1.2E-12 106.2 19.8 194 2-207 37-256 (394)
37 KOG3207 Beta-tubulin folding c 98.9 3.9E-10 8.5E-15 113.8 -0.2 214 572-801 118-333 (505)
38 COG2256 MGS1 ATPase related to 98.9 1.2E-07 2.6E-12 95.8 17.1 153 7-200 39-206 (436)
39 KOG0532 Leucine-rich repeat (L 98.8 2E-10 4.2E-15 119.5 -3.6 172 315-493 74-250 (722)
40 KOG1259 Nischarin, modulator o 98.8 5.5E-10 1.2E-14 106.7 -0.3 131 314-449 282-415 (490)
41 KOG3207 Beta-tubulin folding c 98.8 1.2E-09 2.7E-14 110.2 1.6 39 601-639 300-339 (505)
42 TIGR02928 orc1/cdc6 family rep 98.8 4.7E-07 1E-11 97.9 21.0 189 2-202 22-242 (365)
43 PRK06893 DNA replication initi 98.7 8E-08 1.7E-12 95.2 11.9 149 15-205 38-202 (229)
44 PF13401 AAA_22: AAA domain; P 98.7 8E-08 1.7E-12 86.7 8.7 117 15-146 3-125 (131)
45 TIGR03420 DnaA_homol_Hda DnaA 98.7 1.9E-07 4.1E-12 93.3 11.9 162 3-206 25-201 (226)
46 PRK14949 DNA polymerase III su 98.6 1.6E-06 3.5E-11 98.3 19.7 191 3-206 24-220 (944)
47 PF13173 AAA_14: AAA domain 98.6 5.6E-08 1.2E-12 86.7 6.5 118 17-168 3-127 (128)
48 KOG2120 SCF ubiquitin ligase, 98.6 2.2E-09 4.8E-14 102.7 -2.9 109 603-721 186-297 (419)
49 PRK07003 DNA polymerase III su 98.6 2E-06 4.4E-11 95.5 18.8 188 3-207 24-222 (830)
50 PRK13342 recombination factor 98.6 3.7E-06 8.1E-11 91.5 20.3 160 7-206 27-196 (413)
51 PRK14956 DNA polymerase III su 98.6 4E-06 8.7E-11 89.7 19.2 191 3-206 26-223 (484)
52 PRK05564 DNA polymerase III su 98.5 4.1E-06 8.9E-11 87.7 18.4 166 3-204 12-188 (313)
53 TIGR00678 holB DNA polymerase 98.5 2.5E-06 5.4E-11 82.1 15.5 154 5-201 2-186 (188)
54 PRK14961 DNA polymerase III su 98.5 9.5E-06 2.1E-10 86.6 21.3 183 4-203 25-217 (363)
55 KOG0532 Leucine-rich repeat (L 98.5 6.7E-09 1.5E-13 108.4 -2.7 133 314-451 119-252 (722)
56 KOG2120 SCF ubiquitin ligase, 98.5 5.3E-09 1.2E-13 100.2 -3.4 186 575-779 185-374 (419)
57 TIGR00635 ruvB Holliday juncti 98.5 2.6E-06 5.7E-11 89.4 16.1 183 3-209 12-204 (305)
58 COG4886 Leucine-rich repeat (L 98.5 1E-07 2.2E-12 104.4 5.5 102 365-468 141-243 (394)
59 KOG2028 ATPase related to the 98.5 1.5E-06 3.3E-11 86.0 12.7 158 7-200 153-330 (554)
60 PLN03025 replication factor C 98.5 5.6E-06 1.2E-10 86.9 17.8 171 3-203 21-197 (319)
61 cd01128 rho_factor Transcripti 98.5 2E-07 4.4E-12 92.2 6.5 107 7-121 6-115 (249)
62 PRK14963 DNA polymerase III su 98.5 1.2E-05 2.7E-10 88.4 21.0 183 3-203 22-214 (504)
63 COG4886 Leucine-rich repeat (L 98.5 1E-07 2.2E-12 104.3 4.4 169 316-489 116-289 (394)
64 PRK12323 DNA polymerase III su 98.4 9.7E-06 2.1E-10 89.1 18.6 189 3-205 24-224 (700)
65 PF13855 LRR_8: Leucine rich r 98.4 2.2E-07 4.7E-12 70.4 4.2 56 365-420 2-60 (61)
66 COG1474 CDC6 Cdc6-related prot 98.4 1.8E-05 4E-10 83.3 20.0 162 2-176 24-203 (366)
67 PRK08084 DNA replication initi 98.4 2.2E-06 4.9E-11 85.2 12.6 158 5-204 34-207 (235)
68 PTZ00112 origin recognition co 98.4 5.9E-06 1.3E-10 92.4 16.7 164 2-177 762-950 (1164)
69 PRK14960 DNA polymerase III su 98.4 1.8E-05 3.8E-10 87.3 19.9 184 3-203 23-216 (702)
70 PRK08727 hypothetical protein; 98.4 3.6E-06 7.8E-11 83.6 13.5 149 13-203 38-201 (233)
71 PF13855 LRR_8: Leucine rich r 98.4 1.7E-07 3.7E-12 70.9 3.0 58 410-468 2-60 (61)
72 PF00308 Bac_DnaA: Bacterial d 98.4 3.3E-06 7.2E-11 82.7 12.6 157 16-203 34-205 (219)
73 PRK15386 type III secretion pr 98.4 7.4E-07 1.6E-11 92.7 7.8 139 622-805 48-188 (426)
74 PRK07994 DNA polymerase III su 98.4 2.1E-05 4.5E-10 88.1 19.6 184 4-205 25-219 (647)
75 PRK12402 replication factor C 98.4 4.3E-06 9.4E-11 89.4 14.0 192 3-204 23-224 (337)
76 PRK00080 ruvB Holliday junctio 98.4 9E-06 1.9E-10 85.8 16.0 171 14-208 49-224 (328)
77 PRK09376 rho transcription ter 98.4 1.1E-06 2.3E-11 90.5 8.3 99 15-121 168-268 (416)
78 PRK14962 DNA polymerase III su 98.3 3.5E-05 7.7E-10 84.1 19.6 171 4-210 23-223 (472)
79 cd00009 AAA The AAA+ (ATPases 98.3 4E-06 8.8E-11 77.5 10.8 55 2-58 5-59 (151)
80 TIGR02397 dnaX_nterm DNA polym 98.3 7.1E-05 1.5E-09 80.6 21.8 168 3-207 22-219 (355)
81 PRK06645 DNA polymerase III su 98.3 1.4E-05 3E-10 87.6 16.1 186 4-203 30-226 (507)
82 KOG1909 Ran GTPase-activating 98.3 1.3E-07 2.9E-12 93.2 0.5 83 361-443 27-131 (382)
83 KOG1859 Leucine-rich repeat pr 98.3 1.5E-08 3.2E-13 108.6 -6.6 169 315-488 108-290 (1096)
84 PRK08691 DNA polymerase III su 98.3 2.3E-05 5E-10 87.3 17.7 185 3-204 24-218 (709)
85 PRK09087 hypothetical protein; 98.3 7.6E-06 1.7E-10 80.5 12.4 139 16-205 44-194 (226)
86 PRK14957 DNA polymerase III su 98.3 1.9E-05 4.1E-10 87.0 16.5 173 4-208 25-223 (546)
87 PRK14959 DNA polymerase III su 98.3 4.9E-05 1.1E-09 84.3 19.4 190 4-210 25-225 (624)
88 PRK14958 DNA polymerase III su 98.3 3.4E-05 7.4E-10 85.3 18.2 166 3-204 24-218 (509)
89 PRK14969 DNA polymerase III su 98.3 7.6E-05 1.6E-09 83.2 20.9 187 3-206 24-221 (527)
90 PRK00440 rfc replication facto 98.3 1.7E-05 3.7E-10 84.1 15.3 171 3-203 25-200 (319)
91 PRK14951 DNA polymerase III su 98.3 8.5E-05 1.8E-09 83.2 20.9 189 3-205 24-224 (618)
92 PRK07940 DNA polymerase III su 98.3 2.3E-05 5.1E-10 83.4 15.7 92 108-205 116-212 (394)
93 PRK14955 DNA polymerase III su 98.3 5.4E-05 1.2E-09 81.9 18.8 191 3-203 24-225 (397)
94 PRK07764 DNA polymerase III su 98.2 9.8E-05 2.1E-09 85.9 21.8 186 3-203 23-218 (824)
95 PRK05896 DNA polymerase III su 98.2 7.5E-05 1.6E-09 82.5 19.2 189 3-208 24-223 (605)
96 PLN03150 hypothetical protein; 98.2 2E-06 4.3E-11 98.6 7.4 103 365-468 419-526 (623)
97 PRK14087 dnaA chromosomal repl 98.2 1.7E-05 3.7E-10 86.5 14.3 163 17-207 142-320 (450)
98 PRK04195 replication factor C 98.2 4.4E-05 9.6E-10 84.9 17.5 165 3-204 22-200 (482)
99 PRK05642 DNA replication initi 98.2 1.6E-05 3.5E-10 79.0 12.5 146 17-204 46-206 (234)
100 PRK14964 DNA polymerase III su 98.2 4.3E-05 9.4E-10 83.0 15.9 164 4-203 22-214 (491)
101 PF12799 LRR_4: Leucine Rich r 98.2 1.9E-06 4.1E-11 59.3 3.5 42 364-405 1-42 (44)
102 KOG0531 Protein phosphatase 1, 98.2 5.5E-07 1.2E-11 98.5 1.4 105 362-469 93-198 (414)
103 PF05621 TniB: Bacterial TniB 98.2 6.3E-05 1.4E-09 74.9 15.5 185 5-203 47-258 (302)
104 PRK13341 recombination factor 98.1 2.2E-05 4.8E-10 90.0 13.8 156 6-201 42-212 (725)
105 PRK14952 DNA polymerase III su 98.1 0.00038 8.3E-09 77.8 22.7 193 3-210 21-224 (584)
106 PRK07471 DNA polymerase III su 98.1 7.1E-05 1.5E-09 79.1 16.0 198 3-206 27-238 (365)
107 PRK09112 DNA polymerase III su 98.1 7.2E-05 1.6E-09 78.5 15.8 196 3-206 31-240 (351)
108 TIGR00767 rho transcription te 98.1 1.2E-05 2.7E-10 83.3 9.8 99 15-121 167-267 (415)
109 COG3903 Predicted ATPase [Gene 98.1 3.6E-06 7.9E-11 86.0 5.7 178 15-214 13-197 (414)
110 PLN03150 hypothetical protein; 98.1 6E-06 1.3E-10 94.7 8.0 108 339-448 419-531 (623)
111 KOG0531 Protein phosphatase 1, 98.1 1.1E-06 2.3E-11 96.3 1.8 169 315-490 71-245 (414)
112 PRK07133 DNA polymerase III su 98.1 0.00029 6.3E-09 79.6 20.8 184 3-206 26-220 (725)
113 PF14516 AAA_35: AAA-like doma 98.1 9.2E-05 2E-09 77.8 16.1 198 5-213 21-246 (331)
114 PRK14954 DNA polymerase III su 98.1 0.0003 6.4E-09 79.2 20.5 189 3-201 24-223 (620)
115 PRK06305 DNA polymerase III su 98.1 0.00032 7E-09 76.7 20.3 187 3-206 25-223 (451)
116 PRK09111 DNA polymerase III su 98.1 0.00053 1.1E-08 77.1 22.0 188 3-204 32-231 (598)
117 PRK06647 DNA polymerase III su 98.0 0.00051 1.1E-08 76.9 21.7 185 3-204 24-218 (563)
118 KOG2982 Uncharacterized conser 98.0 2E-06 4.4E-11 82.9 2.3 60 766-826 222-287 (418)
119 PRK14971 DNA polymerase III su 98.0 0.00033 7.3E-09 79.3 20.2 164 3-203 25-219 (614)
120 PRK14970 DNA polymerase III su 98.0 0.00039 8.4E-09 75.0 20.1 167 3-201 25-204 (367)
121 PRK14948 DNA polymerase III su 98.0 0.0004 8.7E-09 78.7 20.8 188 3-205 24-221 (620)
122 KOG1859 Leucine-rich repeat pr 98.0 3.1E-07 6.7E-12 98.8 -3.7 119 388-509 165-290 (1096)
123 PRK14953 DNA polymerase III su 98.0 0.00075 1.6E-08 74.3 22.1 187 3-206 24-220 (486)
124 PRK15386 type III secretion pr 98.0 9.2E-06 2E-10 84.8 6.6 136 652-827 48-186 (426)
125 PRK08903 DnaA regulatory inact 98.0 5.9E-05 1.3E-09 75.2 12.2 160 5-210 30-203 (227)
126 PHA02544 44 clamp loader, smal 98.0 6.8E-05 1.5E-09 79.2 13.1 135 3-174 29-171 (316)
127 PRK03992 proteasome-activating 98.0 7.1E-05 1.5E-09 80.5 13.2 149 15-199 164-336 (389)
128 PRK14950 DNA polymerase III su 98.0 0.00063 1.4E-08 77.4 21.3 187 3-205 24-220 (585)
129 PRK08451 DNA polymerase III su 98.0 0.00018 3.8E-09 79.1 16.0 187 3-206 22-218 (535)
130 PRK14088 dnaA chromosomal repl 98.0 0.00016 3.4E-09 79.0 15.7 158 16-203 130-302 (440)
131 KOG3665 ZYG-1-like serine/thre 98.0 2.7E-06 5.8E-11 96.9 2.0 126 316-443 122-261 (699)
132 TIGR01242 26Sp45 26S proteasom 98.0 2.3E-05 5E-10 84.0 9.0 149 16-200 156-328 (364)
133 PRK05707 DNA polymerase III su 97.9 0.0011 2.4E-08 69.1 20.2 94 108-206 105-203 (328)
134 TIGR02903 spore_lon_C ATP-depe 97.9 0.00025 5.5E-09 80.7 16.8 202 4-207 163-396 (615)
135 TIGR00362 DnaA chromosomal rep 97.9 0.00016 3.5E-09 78.8 14.7 157 16-203 136-307 (405)
136 TIGR02881 spore_V_K stage V sp 97.9 0.0001 2.2E-09 75.0 12.1 132 15-177 41-192 (261)
137 KOG2982 Uncharacterized conser 97.9 2.7E-06 5.9E-11 82.0 0.6 212 572-800 68-285 (418)
138 KOG3665 ZYG-1-like serine/thre 97.9 3.4E-06 7.4E-11 96.0 0.6 135 337-471 121-264 (699)
139 PF12799 LRR_4: Leucine Rich r 97.9 1.9E-05 4.1E-10 54.3 4.0 37 388-424 2-39 (44)
140 PF00004 AAA: ATPase family as 97.9 3.3E-05 7.2E-10 69.6 7.0 69 19-121 1-70 (132)
141 PRK06871 DNA polymerase III su 97.9 0.0022 4.7E-08 66.3 20.8 179 4-202 11-199 (325)
142 PRK00149 dnaA chromosomal repl 97.9 0.00026 5.6E-09 78.3 15.2 157 16-203 148-319 (450)
143 PF13191 AAA_16: AAA ATPase do 97.9 2.3E-05 5E-10 75.5 6.2 54 2-57 7-63 (185)
144 CHL00176 ftsH cell division pr 97.9 0.00015 3.2E-09 82.2 13.2 161 3-199 194-387 (638)
145 PF05496 RuvB_N: Holliday junc 97.8 0.00056 1.2E-08 65.0 14.7 156 14-212 48-227 (233)
146 KOG1909 Ran GTPase-activating 97.8 7.9E-06 1.7E-10 81.0 2.4 172 317-489 93-310 (382)
147 PRK14086 dnaA chromosomal repl 97.8 0.00021 4.6E-09 79.0 13.7 156 17-203 315-485 (617)
148 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00021 4.5E-09 84.4 14.5 169 2-199 194-389 (852)
149 PRK14965 DNA polymerase III su 97.8 0.0009 2E-08 75.7 18.9 187 3-206 24-221 (576)
150 PRK05563 DNA polymerase III su 97.8 0.0019 4.2E-08 72.7 21.3 184 3-203 24-217 (559)
151 KOG2227 Pre-initiation complex 97.8 0.0016 3.4E-08 67.9 18.4 185 2-199 157-361 (529)
152 PRK06620 hypothetical protein; 97.8 9.7E-05 2.1E-09 72.0 9.3 132 17-202 45-185 (214)
153 PRK08769 DNA polymerase III su 97.8 0.00068 1.5E-08 69.9 15.9 183 3-205 12-207 (319)
154 CHL00181 cbbX CbbX; Provisiona 97.8 0.00037 8E-09 71.3 13.8 129 17-176 60-209 (287)
155 TIGR02880 cbbX_cfxQ probable R 97.8 0.00026 5.6E-09 72.6 12.7 130 18-177 60-209 (284)
156 PRK12422 chromosomal replicati 97.8 0.00036 7.9E-09 75.9 14.0 150 17-199 142-306 (445)
157 COG3267 ExeA Type II secretory 97.8 0.0015 3.2E-08 62.8 16.1 177 13-207 48-246 (269)
158 KOG0989 Replication factor C, 97.7 0.00081 1.8E-08 66.1 14.3 179 3-206 44-231 (346)
159 TIGR03689 pup_AAA proteasome A 97.7 0.0004 8.7E-09 75.9 13.6 140 15-178 215-380 (512)
160 COG0593 DnaA ATPase involved i 97.7 0.00022 4.8E-09 74.8 11.1 130 16-176 113-257 (408)
161 PTZ00202 tuzin; Provisional 97.7 0.00035 7.6E-09 72.7 12.3 150 3-176 270-434 (550)
162 CHL00195 ycf46 Ycf46; Provisio 97.7 0.00024 5.2E-09 77.8 11.8 151 16-200 259-429 (489)
163 PRK11331 5-methylcytosine-spec 97.7 6.1E-05 1.3E-09 79.7 7.0 60 3-64 183-242 (459)
164 PF10443 RNA12: RNA12 protein; 97.7 0.0011 2.5E-08 69.2 16.0 204 2-215 3-287 (431)
165 PRK08058 DNA polymerase III su 97.7 0.00075 1.6E-08 70.9 14.9 158 3-175 14-181 (329)
166 TIGR02639 ClpA ATP-dependent C 97.7 0.00035 7.6E-09 82.0 13.5 146 2-176 189-358 (731)
167 KOG1947 Leucine rich repeat pr 97.7 1.2E-05 2.7E-10 91.0 1.4 216 574-809 187-416 (482)
168 PRK08116 hypothetical protein; 97.7 0.00011 2.5E-09 74.2 8.0 102 17-147 115-221 (268)
169 PHA00729 NTP-binding motif con 97.7 0.00056 1.2E-08 65.8 12.1 38 4-41 5-42 (226)
170 KOG1644 U2-associated snRNP A' 97.7 6.8E-05 1.5E-09 68.7 5.4 100 338-441 42-149 (233)
171 KOG2543 Origin recognition com 97.7 0.00011 2.3E-09 74.3 7.2 163 2-176 13-193 (438)
172 KOG1947 Leucine rich repeat pr 97.6 8.8E-06 1.9E-10 92.2 -0.7 63 740-810 380-443 (482)
173 PTZ00454 26S protease regulato 97.6 0.0005 1.1E-08 73.5 12.6 149 15-199 178-350 (398)
174 CHL00095 clpC Clp protease ATP 97.6 0.00052 1.1E-08 81.5 13.8 145 2-175 186-353 (821)
175 smart00382 AAA ATPases associa 97.6 0.00019 4.2E-09 65.7 8.2 91 16-123 2-92 (148)
176 COG1222 RPT1 ATP-dependent 26S 97.6 0.0013 2.8E-08 66.1 13.7 159 2-199 158-356 (406)
177 TIGR01241 FtsH_fam ATP-depende 97.6 0.00074 1.6E-08 75.6 13.7 149 16-200 88-260 (495)
178 PTZ00361 26 proteosome regulat 97.6 0.00054 1.2E-08 73.8 11.5 129 15-177 216-368 (438)
179 KOG0731 AAA+-type ATPase conta 97.6 0.00054 1.2E-08 76.8 11.5 167 2-203 321-521 (774)
180 KOG1644 U2-associated snRNP A' 97.6 7.6E-05 1.6E-09 68.4 4.0 77 365-442 43-123 (233)
181 COG1373 Predicted ATPase (AAA+ 97.6 0.00062 1.3E-08 73.2 11.8 116 18-171 39-162 (398)
182 PF05673 DUF815: Protein of un 97.5 0.0034 7.5E-08 60.7 14.9 36 8-43 44-79 (249)
183 COG0466 Lon ATP-dependent Lon 97.5 0.00041 8.8E-09 76.1 9.6 147 2-176 330-508 (782)
184 PRK07993 DNA polymerase III su 97.5 0.0026 5.6E-08 66.5 15.3 181 4-203 11-201 (334)
185 KOG0741 AAA+-type ATPase [Post 97.5 0.0026 5.6E-08 67.1 14.7 144 15-196 537-704 (744)
186 PRK06090 DNA polymerase III su 97.5 0.0037 7.9E-08 64.5 15.9 180 4-206 12-201 (319)
187 PRK12608 transcription termina 97.5 0.0009 2E-08 69.4 11.1 108 5-121 121-232 (380)
188 PRK06964 DNA polymerase III su 97.5 0.023 5.1E-07 59.3 21.6 90 108-206 131-225 (342)
189 PRK07399 DNA polymerase III su 97.5 0.001 2.2E-08 68.9 11.7 185 3-205 12-220 (314)
190 COG1223 Predicted ATPase (AAA+ 97.5 0.00099 2.2E-08 63.5 10.3 158 6-199 135-318 (368)
191 KOG0734 AAA+-type ATPase conta 97.5 0.00098 2.1E-08 70.2 11.1 140 3-176 315-484 (752)
192 PRK08699 DNA polymerase III su 97.4 0.0096 2.1E-07 62.1 18.5 86 108-202 112-202 (325)
193 PRK08181 transposase; Validate 97.4 0.00033 7.2E-09 70.4 7.2 42 9-54 101-142 (269)
194 KOG0733 Nuclear AAA ATPase (VC 97.4 0.002 4.3E-08 69.2 13.0 149 15-199 222-395 (802)
195 PRK10536 hypothetical protein; 97.4 0.00065 1.4E-08 66.5 8.8 45 5-51 65-109 (262)
196 TIGR00602 rad24 checkpoint pro 97.4 0.001 2.3E-08 74.8 11.3 39 3-41 92-135 (637)
197 COG3899 Predicted ATPase [Gene 97.4 0.0013 2.8E-08 77.8 12.3 207 3-213 8-267 (849)
198 KOG0991 Replication factor C, 97.4 0.0053 1.2E-07 57.7 13.6 59 3-61 35-93 (333)
199 PRK08118 topology modulation p 97.4 0.00012 2.5E-09 68.5 2.9 35 17-51 2-37 (167)
200 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0028 6.1E-08 75.7 14.8 146 2-176 180-349 (852)
201 KOG2004 Mitochondrial ATP-depe 97.3 0.00071 1.5E-08 73.9 8.6 147 2-176 418-596 (906)
202 PRK10865 protein disaggregatio 97.3 0.0039 8.5E-08 74.1 15.4 146 2-176 185-354 (857)
203 PRK11034 clpA ATP-dependent Cl 97.3 0.0021 4.6E-08 74.4 12.3 148 2-176 193-362 (758)
204 PF01695 IstB_IS21: IstB-like 97.2 0.00021 4.5E-09 67.4 3.2 38 15-54 46-83 (178)
205 PF13177 DNA_pol3_delta2: DNA 97.2 0.0013 2.8E-08 61.1 8.2 130 3-164 5-162 (162)
206 TIGR01243 CDC48 AAA family ATP 97.2 0.0036 7.8E-08 73.8 13.4 149 16-200 487-657 (733)
207 PRK06526 transposase; Provisio 97.2 0.00049 1.1E-08 68.9 5.1 28 16-43 98-125 (254)
208 KOG2739 Leucine-rich acidic nu 97.2 0.00018 3.9E-09 69.1 1.9 84 384-469 40-128 (260)
209 PRK12377 putative replication 97.2 0.0024 5.3E-08 63.3 9.8 39 15-55 100-138 (248)
210 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.0022 4.8E-08 64.3 9.9 99 16-119 19-125 (235)
211 PF07693 KAP_NTPase: KAP famil 97.2 0.022 4.7E-07 60.5 18.0 70 4-73 5-82 (325)
212 KOG0733 Nuclear AAA ATPase (VC 97.1 0.0038 8.3E-08 67.1 11.6 129 15-177 544-693 (802)
213 PRK09183 transposase/IS protei 97.1 0.0014 3.1E-08 66.0 8.2 36 16-53 102-137 (259)
214 KOG0735 AAA+-type ATPase [Post 97.1 0.0034 7.4E-08 68.7 11.2 157 16-205 431-615 (952)
215 TIGR02640 gas_vesic_GvpN gas v 97.1 0.011 2.4E-07 60.0 14.6 54 4-64 11-64 (262)
216 KOG4579 Leucine-rich repeat (L 97.1 0.00011 2.5E-09 62.7 -0.2 90 361-451 50-141 (177)
217 PRK08939 primosomal protein Dn 97.1 0.0019 4.2E-08 66.6 8.4 100 15-146 155-260 (306)
218 COG1484 DnaC DNA replication p 97.0 0.0032 7E-08 63.1 9.6 56 6-71 97-152 (254)
219 TIGR02639 ClpA ATP-dependent C 97.0 0.0042 9.1E-08 73.0 12.0 35 17-56 485-519 (731)
220 PRK10733 hflB ATP-dependent me 97.0 0.0049 1.1E-07 70.9 12.3 147 17-199 186-356 (644)
221 TIGR02237 recomb_radB DNA repa 97.0 0.0031 6.8E-08 61.9 9.3 47 16-65 12-58 (209)
222 PF00448 SRP54: SRP54-type pro 97.0 0.0046 9.9E-08 59.3 10.0 58 16-75 1-59 (196)
223 KOG0730 AAA+-type ATPase [Post 97.0 0.0046 1E-07 67.4 10.8 131 14-178 466-617 (693)
224 PRK06921 hypothetical protein; 97.0 0.0024 5.2E-08 64.6 8.3 39 15-54 116-154 (266)
225 PRK10787 DNA-binding ATP-depen 97.0 0.0033 7.1E-08 73.5 10.5 40 2-41 329-374 (784)
226 cd01393 recA_like RecA is a b 97.0 0.0079 1.7E-07 59.9 11.9 56 15-71 18-77 (226)
227 COG0470 HolB ATPase involved i 97.0 0.0064 1.4E-07 64.6 11.9 136 3-168 9-173 (325)
228 KOG1969 DNA replication checkp 97.0 0.0015 3.2E-08 71.7 6.8 74 15-121 325-399 (877)
229 KOG4579 Leucine-rich repeat (L 97.0 7.9E-05 1.7E-09 63.6 -2.2 110 318-429 29-143 (177)
230 PF04665 Pox_A32: Poxvirus A32 97.0 0.0018 4E-08 63.1 6.8 35 18-54 15-49 (241)
231 cd01133 F1-ATPase_beta F1 ATP 97.0 0.0025 5.5E-08 63.5 7.9 98 15-121 68-175 (274)
232 TIGR02012 tigrfam_recA protein 97.0 0.003 6.4E-08 64.9 8.5 90 15-119 54-143 (321)
233 PRK07261 topology modulation p 96.9 0.0036 7.8E-08 58.8 8.5 34 18-51 2-36 (171)
234 PRK07132 DNA polymerase III su 96.9 0.03 6.4E-07 57.4 15.7 159 3-198 4-177 (299)
235 KOG0739 AAA+-type ATPase [Post 96.9 0.01 2.3E-07 57.9 11.4 147 16-199 166-334 (439)
236 PRK07952 DNA replication prote 96.9 0.0059 1.3E-07 60.5 10.2 37 16-54 99-135 (244)
237 COG2884 FtsE Predicted ATPase 96.9 0.0056 1.2E-07 55.9 9.1 60 99-159 146-209 (223)
238 KOG2123 Uncharacterized conser 96.9 7.1E-05 1.5E-09 71.8 -3.1 100 363-463 18-123 (388)
239 PRK06835 DNA replication prote 96.9 0.0025 5.4E-08 66.3 7.7 37 17-55 184-220 (329)
240 cd00983 recA RecA is a bacter 96.9 0.0037 7.9E-08 64.3 8.5 89 16-119 55-143 (325)
241 KOG3864 Uncharacterized conser 96.9 0.00017 3.6E-09 66.3 -1.0 90 712-810 103-192 (221)
242 PRK04132 replication factor C 96.9 0.02 4.3E-07 66.7 15.1 155 22-206 570-732 (846)
243 PRK09354 recA recombinase A; P 96.9 0.0042 9.1E-08 64.4 8.7 89 16-119 60-148 (349)
244 PF08423 Rad51: Rad51; InterP 96.8 0.0068 1.5E-07 61.0 10.1 99 16-119 38-143 (256)
245 PLN00020 ribulose bisphosphate 96.8 0.0039 8.4E-08 64.0 7.9 29 15-43 147-175 (413)
246 PF13207 AAA_17: AAA domain; P 96.8 0.0011 2.4E-08 58.5 3.6 23 18-40 1-23 (121)
247 TIGR00763 lon ATP-dependent pr 96.8 0.0097 2.1E-07 70.4 12.3 40 3-42 328-373 (775)
248 KOG0736 Peroxisome assembly fa 96.8 0.011 2.4E-07 65.5 11.5 72 16-121 705-776 (953)
249 TIGR03346 chaperone_ClpB ATP-d 96.8 0.015 3.3E-07 69.5 13.9 40 16-57 595-634 (852)
250 PRK09361 radB DNA repair and r 96.8 0.0097 2.1E-07 59.2 10.5 45 16-63 23-67 (225)
251 KOG0728 26S proteasome regulat 96.7 0.02 4.2E-07 54.5 11.3 128 14-176 179-331 (404)
252 PRK10865 protein disaggregatio 96.7 0.013 2.8E-07 69.9 12.7 38 17-56 599-636 (857)
253 KOG1514 Origin recognition com 96.7 0.038 8.2E-07 61.0 15.0 185 3-204 404-619 (767)
254 PF03215 Rad17: Rad17 cell cyc 96.7 0.0093 2E-07 66.0 10.7 48 4-55 28-80 (519)
255 PRK04296 thymidine kinase; Pro 96.7 0.0023 4.9E-08 61.4 5.2 112 17-147 3-116 (190)
256 PRK14722 flhF flagellar biosyn 96.7 0.0096 2.1E-07 62.6 10.1 60 16-75 137-197 (374)
257 TIGR03877 thermo_KaiC_1 KaiC d 96.7 0.013 2.9E-07 58.5 10.7 54 15-73 20-73 (237)
258 cd01120 RecA-like_NTPases RecA 96.7 0.011 2.4E-07 55.3 9.6 39 18-58 1-39 (165)
259 TIGR02238 recomb_DMC1 meiotic 96.7 0.0093 2E-07 61.7 9.5 99 16-119 96-201 (313)
260 COG2812 DnaX DNA polymerase II 96.6 0.034 7.4E-07 60.7 13.9 181 4-203 25-217 (515)
261 PLN03187 meiotic recombination 96.6 0.019 4E-07 60.0 11.4 99 16-119 126-231 (344)
262 TIGR01243 CDC48 AAA family ATP 96.6 0.02 4.3E-07 67.7 13.0 150 16-201 212-382 (733)
263 PF13306 LRR_5: Leucine rich r 96.5 0.0056 1.2E-07 54.7 6.3 105 355-465 3-111 (129)
264 PRK11034 clpA ATP-dependent Cl 96.5 0.011 2.4E-07 68.7 10.1 36 16-56 488-523 (758)
265 PF10236 DAP3: Mitochondrial r 96.5 0.054 1.2E-06 56.2 14.2 47 157-203 258-306 (309)
266 KOG2739 Leucine-rich acidic nu 96.5 0.0018 3.8E-08 62.5 2.8 83 361-443 62-154 (260)
267 PF00154 RecA: recA bacterial 96.5 0.02 4.3E-07 58.8 10.3 93 16-123 53-145 (322)
268 COG0465 HflB ATP-dependent Zn 96.5 0.024 5.1E-07 62.7 11.6 164 2-201 160-356 (596)
269 PRK04301 radA DNA repair and r 96.4 0.022 4.8E-07 59.8 11.0 57 16-73 102-162 (317)
270 TIGR03499 FlhF flagellar biosy 96.4 0.017 3.6E-07 59.2 9.8 42 15-56 193-234 (282)
271 KOG2228 Origin recognition com 96.4 0.06 1.3E-06 54.1 12.9 163 2-176 31-219 (408)
272 COG5238 RNA1 Ran GTPase-activa 96.4 0.0013 2.9E-08 63.1 1.6 172 363-535 29-253 (388)
273 TIGR02239 recomb_RAD51 DNA rep 96.4 0.016 3.5E-07 60.2 9.6 57 16-73 96-156 (316)
274 PTZ00035 Rad51 protein; Provis 96.4 0.022 4.7E-07 59.8 10.7 99 16-119 118-223 (337)
275 COG1618 Predicted nucleotide k 96.4 0.0046 1E-07 54.8 4.5 30 18-48 7-36 (179)
276 COG0464 SpoVK ATPases of the A 96.4 0.022 4.7E-07 64.2 11.3 130 15-178 275-425 (494)
277 cd03115 SRP The signal recogni 96.4 0.02 4.2E-07 54.2 9.4 37 18-56 2-38 (173)
278 COG0194 Gmk Guanylate kinase [ 96.4 0.02 4.3E-07 52.7 8.6 25 16-40 4-28 (191)
279 PRK00771 signal recognition pa 96.4 0.023 5E-07 61.4 10.6 58 15-74 94-152 (437)
280 cd01135 V_A-ATPase_B V/A-type 96.3 0.014 3E-07 58.1 8.2 99 15-121 68-178 (276)
281 PRK06547 hypothetical protein; 96.3 0.0056 1.2E-07 57.3 5.1 38 4-41 3-40 (172)
282 KOG2035 Replication factor C, 96.3 0.1 2.2E-06 50.9 13.3 187 13-227 31-259 (351)
283 PRK04328 hypothetical protein; 96.3 0.02 4.4E-07 57.6 9.4 54 15-73 22-75 (249)
284 PRK12727 flagellar biosynthesi 96.3 0.02 4.4E-07 62.3 9.6 41 15-55 349-389 (559)
285 PF07728 AAA_5: AAA domain (dy 96.3 0.0085 1.9E-07 54.3 6.0 40 19-63 2-41 (139)
286 PRK06067 flagellar accessory p 96.3 0.035 7.7E-07 55.5 11.0 100 15-119 24-130 (234)
287 PRK08533 flagellar accessory p 96.3 0.025 5.5E-07 56.0 9.7 54 15-73 23-76 (230)
288 PLN03186 DNA repair protein RA 96.3 0.029 6.3E-07 58.6 10.4 57 16-73 123-183 (342)
289 cd01394 radB RadB. The archaea 96.2 0.034 7.3E-07 55.0 10.5 53 5-59 6-60 (218)
290 PRK14974 cell division protein 96.2 0.045 9.7E-07 57.0 11.6 58 15-74 139-197 (336)
291 PRK05917 DNA polymerase III su 96.2 0.09 1.9E-06 53.2 13.4 39 4-42 6-45 (290)
292 PF01583 APS_kinase: Adenylyls 96.2 0.0085 1.8E-07 54.3 5.5 38 16-55 2-39 (156)
293 PRK13695 putative NTPase; Prov 96.2 0.0078 1.7E-07 57.0 5.6 35 18-53 2-36 (174)
294 TIGR03345 VI_ClpV1 type VI sec 96.2 0.0064 1.4E-07 72.1 6.0 39 16-56 596-634 (852)
295 cd03238 ABC_UvrA The excision 96.2 0.024 5.2E-07 53.3 8.7 24 15-38 20-43 (176)
296 COG2255 RuvB Holliday junction 96.2 0.21 4.5E-06 49.2 15.0 70 141-211 156-228 (332)
297 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.01 2.2E-07 54.1 5.9 122 17-147 3-138 (159)
298 KOG2123 Uncharacterized conser 96.2 0.00056 1.2E-08 65.9 -2.3 82 385-468 17-99 (388)
299 PRK12597 F0F1 ATP synthase sub 96.2 0.014 3.1E-07 63.0 7.9 98 15-121 142-249 (461)
300 cd03214 ABC_Iron-Siderophores_ 96.2 0.014 3.1E-07 55.5 7.1 135 15-160 24-171 (180)
301 cd01124 KaiC KaiC is a circadi 96.1 0.024 5.2E-07 54.5 8.7 51 18-73 1-51 (187)
302 PF13306 LRR_5: Leucine rich r 96.1 0.015 3.2E-07 51.9 6.8 116 336-460 10-129 (129)
303 PRK06696 uridine kinase; Valid 96.1 0.019 4.1E-07 56.8 8.0 41 3-43 6-49 (223)
304 TIGR02236 recomb_radA DNA repa 96.1 0.026 5.7E-07 59.1 9.5 57 16-73 95-155 (310)
305 PRK05973 replicative DNA helic 96.1 0.04 8.6E-07 54.2 10.0 49 15-67 63-111 (237)
306 smart00763 AAA_PrkA PrkA AAA d 96.1 0.0087 1.9E-07 62.0 5.7 41 2-42 58-104 (361)
307 KOG0743 AAA+-type ATPase [Post 96.1 0.2 4.3E-06 52.8 15.4 25 17-41 236-260 (457)
308 PF00006 ATP-synt_ab: ATP synt 96.1 0.013 2.8E-07 56.7 6.5 58 7-68 5-64 (215)
309 cd01131 PilT Pilus retraction 96.1 0.011 2.4E-07 57.2 5.9 112 17-151 2-113 (198)
310 PRK12724 flagellar biosynthesi 96.1 0.025 5.4E-07 60.0 8.9 40 16-56 223-262 (432)
311 COG1875 NYN ribonuclease and A 96.1 0.0034 7.5E-08 63.3 2.5 42 8-49 237-279 (436)
312 KOG0735 AAA+-type ATPase [Post 96.1 0.044 9.5E-07 60.4 10.8 146 17-200 702-870 (952)
313 TIGR00064 ftsY signal recognit 96.1 0.043 9.3E-07 55.8 10.4 56 15-72 71-127 (272)
314 PF03308 ArgK: ArgK protein; 96.1 0.013 2.9E-07 57.1 6.3 56 4-59 15-72 (266)
315 PF06309 Torsin: Torsin; Inte 96.1 0.064 1.4E-06 46.2 9.6 37 5-41 39-78 (127)
316 KOG3347 Predicted nucleotide k 96.0 0.013 2.7E-07 51.2 5.3 34 16-56 7-40 (176)
317 cd01134 V_A-ATPase_A V/A-type 96.0 0.04 8.6E-07 56.6 9.7 49 15-67 156-205 (369)
318 PRK11889 flhF flagellar biosyn 96.0 0.045 9.8E-07 57.2 10.2 40 15-56 240-279 (436)
319 CHL00206 ycf2 Ycf2; Provisiona 96.0 0.031 6.7E-07 69.0 10.3 29 15-43 1629-1657(2281)
320 TIGR00708 cobA cob(I)alamin ad 96.0 0.018 4E-07 53.1 6.5 123 16-147 5-140 (173)
321 TIGR02858 spore_III_AA stage I 96.0 0.039 8.5E-07 55.7 9.6 135 4-151 98-233 (270)
322 PF13245 AAA_19: Part of AAA d 96.0 0.021 4.6E-07 44.9 5.9 26 15-40 9-34 (76)
323 cd01121 Sms Sms (bacterial rad 95.9 0.042 9.1E-07 58.4 10.0 87 16-119 82-168 (372)
324 PRK10867 signal recognition pa 95.9 0.071 1.5E-06 57.6 11.8 58 16-74 100-158 (433)
325 PF13238 AAA_18: AAA domain; P 95.9 0.0065 1.4E-07 54.2 3.4 22 19-40 1-22 (129)
326 PF13481 AAA_25: AAA domain; P 95.9 0.035 7.6E-07 53.6 8.8 101 17-119 33-151 (193)
327 PF06745 KaiC: KaiC; InterPro 95.9 0.016 3.4E-07 57.7 6.4 101 15-119 18-125 (226)
328 PRK05541 adenylylsulfate kinas 95.9 0.013 2.8E-07 55.7 5.4 37 15-53 6-42 (176)
329 PRK12726 flagellar biosynthesi 95.9 0.059 1.3E-06 56.2 10.4 58 15-74 205-263 (407)
330 CHL00095 clpC Clp protease ATP 95.9 0.028 6E-07 67.1 9.3 38 17-56 540-577 (821)
331 TIGR00959 ffh signal recogniti 95.9 0.076 1.7E-06 57.3 11.7 58 16-74 99-157 (428)
332 PF00910 RNA_helicase: RNA hel 95.9 0.0065 1.4E-07 51.9 2.9 25 19-43 1-25 (107)
333 COG4608 AppF ABC-type oligopep 95.8 0.031 6.8E-07 54.9 7.8 128 15-154 38-177 (268)
334 PRK12723 flagellar biosynthesi 95.8 0.048 1E-06 58.0 9.8 61 15-75 173-236 (388)
335 COG0467 RAD55 RecA-superfamily 95.8 0.047 1E-06 55.6 9.5 51 14-68 21-71 (260)
336 PRK07667 uridine kinase; Provi 95.8 0.017 3.6E-07 55.7 5.9 39 4-42 3-43 (193)
337 PF00625 Guanylate_kin: Guanyl 95.8 0.019 4.1E-07 54.8 6.3 38 16-55 2-39 (183)
338 COG1703 ArgK Putative periplas 95.8 0.02 4.3E-07 56.6 6.2 55 6-60 39-95 (323)
339 TIGR02655 circ_KaiC circadian 95.8 0.061 1.3E-06 60.0 11.0 110 5-119 250-363 (484)
340 cd02019 NK Nucleoside/nucleoti 95.8 0.0085 1.9E-07 46.3 3.0 23 18-40 1-23 (69)
341 KOG2170 ATPase of the AAA+ sup 95.8 0.02 4.4E-07 56.4 6.1 28 15-42 109-136 (344)
342 cd03223 ABCD_peroxisomal_ALDP 95.8 0.051 1.1E-06 50.9 8.8 27 15-41 26-52 (166)
343 PF02562 PhoH: PhoH-like prote 95.8 0.012 2.7E-07 56.1 4.6 47 5-53 10-56 (205)
344 PRK09280 F0F1 ATP synthase sub 95.7 0.029 6.3E-07 60.4 7.8 98 15-121 143-250 (463)
345 cd03281 ABC_MSH5_euk MutS5 hom 95.7 0.014 3.1E-07 57.0 5.1 24 16-39 29-52 (213)
346 TIGR03305 alt_F1F0_F1_bet alte 95.7 0.031 6.6E-07 60.1 7.9 98 15-121 137-244 (449)
347 COG1428 Deoxynucleoside kinase 95.7 0.019 4.1E-07 53.9 5.5 28 16-43 4-31 (216)
348 PRK05703 flhF flagellar biosyn 95.7 0.056 1.2E-06 58.7 9.9 40 16-56 221-261 (424)
349 KOG0729 26S proteasome regulat 95.7 0.035 7.5E-07 53.4 7.1 28 14-41 209-236 (435)
350 PF08433 KTI12: Chromatin asso 95.7 0.03 6.6E-07 56.5 7.3 26 17-42 2-27 (270)
351 COG1419 FlhF Flagellar GTP-bin 95.7 0.097 2.1E-06 54.8 10.9 62 15-76 202-264 (407)
352 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.7 0.024 5.3E-07 51.5 6.0 36 15-53 25-60 (144)
353 cd03216 ABC_Carb_Monos_I This 95.6 0.023 5.1E-07 52.9 6.0 125 15-160 25-155 (163)
354 PF00485 PRK: Phosphoribulokin 95.6 0.011 2.5E-07 57.0 4.0 26 18-43 1-26 (194)
355 TIGR03878 thermo_KaiC_2 KaiC d 95.6 0.07 1.5E-06 54.0 9.7 40 15-56 35-74 (259)
356 TIGR03575 selen_PSTK_euk L-ser 95.6 0.047 1E-06 56.8 8.5 23 19-41 2-24 (340)
357 PRK09519 recA DNA recombinatio 95.6 0.05 1.1E-06 62.6 9.4 89 16-119 60-148 (790)
358 TIGR01425 SRP54_euk signal rec 95.6 0.069 1.5E-06 57.3 9.9 56 16-73 100-156 (429)
359 COG0468 RecA RecA/RadA recombi 95.6 0.098 2.1E-06 52.6 10.4 47 15-63 59-105 (279)
360 cd03229 ABC_Class3 This class 95.6 0.019 4.2E-07 54.5 5.3 36 15-53 25-60 (178)
361 TIGR03881 KaiC_arch_4 KaiC dom 95.6 0.15 3.2E-06 50.8 11.9 54 15-73 19-72 (229)
362 COG0542 clpA ATP-binding subun 95.5 0.034 7.3E-07 63.5 7.7 147 2-176 177-346 (786)
363 COG2607 Predicted ATPase (AAA+ 95.5 0.074 1.6E-06 50.8 8.7 34 10-43 79-112 (287)
364 cd03247 ABCC_cytochrome_bd The 95.5 0.044 9.6E-07 52.1 7.6 27 15-41 27-53 (178)
365 PF00560 LRR_1: Leucine Rich R 95.5 0.0048 1E-07 35.1 0.5 19 411-429 2-20 (22)
366 COG1066 Sms Predicted ATP-depe 95.5 0.038 8.3E-07 57.2 7.2 86 16-119 93-178 (456)
367 PF13671 AAA_33: AAA domain; P 95.5 0.014 3E-07 53.3 3.6 24 18-41 1-24 (143)
368 KOG0651 26S proteasome regulat 95.4 0.036 7.9E-07 54.8 6.5 28 16-43 166-193 (388)
369 PRK06762 hypothetical protein; 95.4 0.013 2.9E-07 54.9 3.6 25 16-40 2-26 (166)
370 cd03230 ABC_DR_subfamily_A Thi 95.4 0.029 6.3E-07 53.0 5.9 35 16-53 26-60 (173)
371 COG0529 CysC Adenylylsulfate k 95.4 0.037 8E-07 50.1 5.9 34 10-43 17-50 (197)
372 PRK08927 fliI flagellum-specif 95.4 0.038 8.2E-07 59.3 7.2 95 15-121 157-260 (442)
373 TIGR01040 V-ATPase_V1_B V-type 95.4 0.045 9.7E-07 58.6 7.6 99 15-121 140-259 (466)
374 PRK11823 DNA repair protein Ra 95.4 0.083 1.8E-06 57.9 10.0 87 16-119 80-166 (446)
375 cd01132 F1_ATPase_alpha F1 ATP 95.4 0.065 1.4E-06 53.5 8.3 95 15-121 68-173 (274)
376 PF00560 LRR_1: Leucine Rich R 95.4 0.0064 1.4E-07 34.5 0.7 21 365-385 1-21 (22)
377 COG0055 AtpD F0F1-type ATP syn 95.4 0.047 1E-06 55.4 7.1 104 15-121 146-253 (468)
378 PRK08233 hypothetical protein; 95.4 0.014 3.1E-07 55.8 3.6 26 16-41 3-28 (182)
379 COG0572 Udk Uridine kinase [Nu 95.4 0.016 3.4E-07 55.3 3.7 29 15-43 7-35 (218)
380 TIGR01360 aden_kin_iso1 adenyl 95.3 0.016 3.5E-07 55.7 3.9 26 15-40 2-27 (188)
381 PTZ00301 uridine kinase; Provi 95.3 0.029 6.2E-07 54.4 5.4 26 16-41 3-28 (210)
382 PRK05480 uridine/cytidine kina 95.3 0.017 3.6E-07 56.7 3.9 27 14-40 4-30 (209)
383 PRK15455 PrkA family serine pr 95.3 0.017 3.7E-07 63.1 4.2 41 2-42 83-129 (644)
384 cd02025 PanK Pantothenate kina 95.3 0.096 2.1E-06 51.5 9.2 41 18-58 1-41 (220)
385 PF03205 MobB: Molybdopterin g 95.3 0.036 7.9E-07 49.8 5.6 39 17-56 1-39 (140)
386 PRK14721 flhF flagellar biosyn 95.3 0.13 2.9E-06 55.1 10.8 60 15-74 190-250 (420)
387 PRK08972 fliI flagellum-specif 95.3 0.032 6.9E-07 59.6 6.1 95 15-121 161-264 (444)
388 TIGR01039 atpD ATP synthase, F 95.2 0.064 1.4E-06 57.7 8.2 98 15-121 142-249 (461)
389 PRK12678 transcription termina 95.2 0.037 7.9E-07 60.4 6.4 98 15-121 415-515 (672)
390 PRK06995 flhF flagellar biosyn 95.2 0.11 2.4E-06 56.7 10.1 59 16-74 256-315 (484)
391 cd00046 DEXDc DEAD-like helica 95.2 0.048 1E-06 49.2 6.6 36 18-53 2-37 (144)
392 PRK08149 ATP synthase SpaL; Va 95.2 0.048 1E-06 58.4 7.2 95 15-121 150-253 (428)
393 PRK03839 putative kinase; Prov 95.2 0.017 3.8E-07 55.0 3.6 24 18-41 2-25 (180)
394 PF07726 AAA_3: ATPase family 95.2 0.012 2.6E-07 50.7 2.1 25 19-43 2-26 (131)
395 KOG3864 Uncharacterized conser 95.2 0.0027 5.7E-08 58.7 -1.9 39 736-781 151-189 (221)
396 TIGR01041 ATP_syn_B_arch ATP s 95.2 0.081 1.8E-06 57.4 8.9 99 15-121 140-250 (458)
397 TIGR00235 udk uridine kinase. 95.2 0.018 3.8E-07 56.4 3.6 27 15-41 5-31 (207)
398 cd01122 GP4d_helicase GP4d_hel 95.2 0.14 3.1E-06 52.5 10.6 52 16-70 30-81 (271)
399 TIGR00150 HI0065_YjeE ATPase, 95.2 0.029 6.2E-07 49.4 4.5 38 5-42 9-48 (133)
400 PRK09270 nucleoside triphospha 95.2 0.042 9.2E-07 54.6 6.3 38 6-43 22-60 (229)
401 PF03193 DUF258: Protein of un 95.1 0.034 7.4E-07 50.7 5.0 36 2-40 24-59 (161)
402 PTZ00185 ATPase alpha subunit; 95.1 0.093 2E-06 56.7 9.0 45 15-59 188-238 (574)
403 PRK06002 fliI flagellum-specif 95.1 0.039 8.5E-07 59.2 6.2 95 16-121 165-266 (450)
404 PRK04040 adenylate kinase; Pro 95.1 0.019 4.1E-07 54.8 3.5 26 16-41 2-27 (188)
405 PRK10416 signal recognition pa 95.1 0.23 5.1E-06 51.6 11.8 39 15-55 113-151 (318)
406 PF12775 AAA_7: P-loop contain 95.1 0.021 4.5E-07 58.0 4.0 54 6-62 24-77 (272)
407 PRK07276 DNA polymerase III su 95.1 0.68 1.5E-05 47.2 14.6 66 108-174 103-173 (290)
408 cd00267 ABC_ATPase ABC (ATP-bi 95.1 0.032 6.9E-07 51.8 4.8 125 16-160 25-153 (157)
409 PRK14723 flhF flagellar biosyn 95.1 0.16 3.5E-06 58.4 11.1 60 16-75 185-245 (767)
410 smart00072 GuKc Guanylate kina 95.0 0.083 1.8E-06 50.5 7.8 26 16-41 2-27 (184)
411 cd00071 GMPK Guanosine monopho 95.0 0.052 1.1E-06 48.8 6.0 24 18-41 1-24 (137)
412 COG1102 Cmk Cytidylate kinase 95.0 0.02 4.3E-07 51.0 3.1 46 18-76 2-47 (179)
413 cd01136 ATPase_flagellum-secre 95.0 0.057 1.2E-06 55.8 6.8 95 15-121 68-171 (326)
414 KOG0744 AAA+-type ATPase [Post 95.0 0.056 1.2E-06 53.8 6.3 37 17-53 178-216 (423)
415 PRK00889 adenylylsulfate kinas 95.0 0.041 8.9E-07 52.1 5.5 37 15-53 3-39 (175)
416 COG0488 Uup ATPase components 94.9 0.18 3.9E-06 56.1 10.9 138 16-162 348-511 (530)
417 COG3854 SpoIIIAA ncharacterize 94.9 0.16 3.4E-06 48.2 8.7 124 7-148 128-254 (308)
418 cd03228 ABCC_MRP_Like The MRP 94.9 0.06 1.3E-06 50.7 6.3 36 15-53 27-62 (171)
419 CHL00060 atpB ATP synthase CF1 94.9 0.17 3.6E-06 55.0 10.2 105 15-121 160-274 (494)
420 PRK00625 shikimate kinase; Pro 94.9 0.022 4.9E-07 53.3 3.3 24 18-41 2-25 (173)
421 PHA02774 E1; Provisional 94.9 0.048 1E-06 59.8 6.2 49 5-57 422-471 (613)
422 TIGR00554 panK_bact pantothena 94.9 0.085 1.8E-06 53.7 7.6 44 14-57 60-103 (290)
423 COG3640 CooC CO dehydrogenase 94.9 0.064 1.4E-06 51.1 6.1 50 18-75 2-51 (255)
424 PRK06936 type III secretion sy 94.9 0.052 1.1E-06 58.2 6.3 95 15-121 161-264 (439)
425 PTZ00494 tuzin-like protein; P 94.9 0.23 5E-06 52.2 10.5 152 5-176 384-544 (664)
426 PRK09302 circadian clock prote 94.8 0.2 4.4E-06 56.5 11.3 99 16-119 273-373 (509)
427 TIGR00416 sms DNA repair prote 94.8 0.16 3.5E-06 55.8 10.0 88 16-120 94-181 (454)
428 PRK00131 aroK shikimate kinase 94.8 0.029 6.2E-07 53.2 3.8 26 16-41 4-29 (175)
429 PRK09435 membrane ATPase/prote 94.7 0.21 4.7E-06 51.9 10.2 39 5-43 43-83 (332)
430 TIGR01359 UMP_CMP_kin_fam UMP- 94.7 0.023 5E-07 54.4 3.0 24 18-41 1-24 (183)
431 PF03266 NTPase_1: NTPase; In 94.7 0.031 6.7E-07 52.1 3.6 24 19-42 2-25 (168)
432 PRK05922 type III secretion sy 94.7 0.08 1.7E-06 56.8 7.1 95 15-121 156-259 (434)
433 COG1936 Predicted nucleotide k 94.7 0.025 5.4E-07 51.2 2.8 20 18-37 2-21 (180)
434 PF03969 AFG1_ATPase: AFG1-lik 94.7 0.031 6.7E-07 59.0 4.0 29 15-43 61-89 (362)
435 PRK09099 type III secretion sy 94.7 0.066 1.4E-06 57.7 6.5 95 15-121 162-265 (441)
436 cd00544 CobU Adenosylcobinamid 94.7 0.15 3.3E-06 47.5 8.1 46 18-69 1-46 (169)
437 COG1121 ZnuC ABC-type Mn/Zn tr 94.7 0.19 4E-06 49.5 9.0 24 16-39 30-53 (254)
438 TIGR02655 circ_KaiC circadian 94.7 0.18 4E-06 56.2 10.3 55 15-73 20-74 (484)
439 KOG0727 26S proteasome regulat 94.7 0.13 2.9E-06 49.1 7.7 30 14-43 187-216 (408)
440 cd02029 PRK_like Phosphoribulo 94.7 0.16 3.5E-06 50.3 8.6 36 18-55 1-36 (277)
441 COG0542 clpA ATP-binding subun 94.6 0.069 1.5E-06 61.0 6.9 109 15-145 520-642 (786)
442 cd00227 CPT Chloramphenicol (C 94.6 0.03 6.5E-07 53.0 3.5 25 17-41 3-27 (175)
443 TIGR02322 phosphon_PhnN phosph 94.6 0.028 6.2E-07 53.5 3.4 25 17-41 2-26 (179)
444 PRK10751 molybdopterin-guanine 94.6 0.037 8E-07 51.3 4.0 29 15-43 5-33 (173)
445 PF13086 AAA_11: AAA domain; P 94.6 0.053 1.1E-06 54.3 5.5 34 5-40 8-41 (236)
446 cd03217 ABC_FeS_Assembly ABC-t 94.6 0.072 1.6E-06 51.7 6.1 25 15-39 25-49 (200)
447 PRK04196 V-type ATP synthase s 94.6 0.12 2.6E-06 56.2 8.3 99 15-121 142-252 (460)
448 PRK10463 hydrogenase nickel in 94.6 0.07 1.5E-06 53.8 6.0 39 5-43 93-131 (290)
449 cd00984 DnaB_C DnaB helicase C 94.5 0.28 6E-06 49.4 10.6 52 16-70 13-64 (242)
450 TIGR03574 selen_PSTK L-seryl-t 94.5 0.1 2.2E-06 52.8 7.3 25 18-42 1-25 (249)
451 TIGR00073 hypB hydrogenase acc 94.5 0.038 8.3E-07 54.0 4.1 33 9-41 15-47 (207)
452 cd02023 UMPK Uridine monophosp 94.5 0.026 5.6E-07 54.8 2.9 23 18-40 1-23 (198)
453 cd02024 NRK1 Nicotinamide ribo 94.5 0.029 6.2E-07 53.1 3.0 23 18-40 1-23 (187)
454 PF05970 PIF1: PIF1-like helic 94.5 0.079 1.7E-06 56.7 6.7 40 4-43 10-49 (364)
455 cd02028 UMPK_like Uridine mono 94.5 0.047 1E-06 51.7 4.5 25 18-42 1-25 (179)
456 cd02021 GntK Gluconate kinase 94.5 0.028 6.1E-07 51.7 2.9 23 18-40 1-23 (150)
457 TIGR03324 alt_F1F0_F1_al alter 94.5 0.11 2.3E-06 56.6 7.6 95 15-121 161-266 (497)
458 COG3598 RepA RecA-family ATPas 94.5 0.21 4.5E-06 50.0 8.8 101 18-118 91-203 (402)
459 KOG1532 GTPase XAB1, interacts 94.5 0.048 1E-06 52.8 4.3 36 15-50 18-53 (366)
460 COG0003 ArsA Predicted ATPase 94.4 0.078 1.7E-06 54.7 6.2 46 16-63 2-47 (322)
461 COG3910 Predicted ATPase [Gene 94.4 0.34 7.3E-06 44.6 9.3 25 15-39 36-60 (233)
462 TIGR03498 FliI_clade3 flagella 94.4 0.057 1.2E-06 57.9 5.3 27 15-41 139-165 (418)
463 PRK06217 hypothetical protein; 94.4 0.036 7.9E-07 52.9 3.5 25 17-41 2-26 (183)
464 PF02374 ArsA_ATPase: Anion-tr 94.4 0.076 1.6E-06 55.0 6.1 43 16-60 1-43 (305)
465 PRK07721 fliI flagellum-specif 94.4 0.092 2E-06 56.9 6.8 28 14-41 156-183 (438)
466 COG1224 TIP49 DNA helicase TIP 94.3 0.12 2.7E-06 52.3 7.0 65 7-74 54-125 (450)
467 CHL00059 atpA ATP synthase CF1 94.3 0.11 2.3E-06 56.3 7.2 51 15-69 140-193 (485)
468 PRK13949 shikimate kinase; Pro 94.3 0.04 8.6E-07 51.6 3.6 25 17-41 2-26 (169)
469 cd03369 ABCC_NFT1 Domain 2 of 94.3 0.18 3.9E-06 49.2 8.4 26 15-40 33-58 (207)
470 PF13604 AAA_30: AAA domain; P 94.3 0.089 1.9E-06 50.7 6.0 37 7-43 9-45 (196)
471 PRK14737 gmk guanylate kinase; 94.3 0.041 9E-07 52.3 3.6 26 15-40 3-28 (186)
472 PRK03846 adenylylsulfate kinas 94.3 0.07 1.5E-06 51.7 5.2 29 14-42 22-50 (198)
473 TIGR03880 KaiC_arch_3 KaiC dom 94.2 0.32 6.9E-06 48.2 10.0 48 15-66 15-62 (224)
474 COG0563 Adk Adenylate kinase a 94.2 0.041 9E-07 51.7 3.4 24 18-41 2-25 (178)
475 PRK05986 cob(I)alamin adenolsy 94.2 0.1 2.2E-06 49.0 6.0 124 15-147 21-158 (191)
476 PF07088 GvpD: GvpD gas vesicl 94.2 0.085 1.9E-06 54.2 5.8 45 8-55 2-46 (484)
477 KOG0738 AAA+-type ATPase [Post 94.2 0.15 3.3E-06 52.2 7.5 28 15-42 244-271 (491)
478 TIGR01069 mutS2 MutS2 family p 94.2 0.054 1.2E-06 63.5 5.0 25 15-39 321-345 (771)
479 PRK05439 pantothenate kinase; 94.2 0.17 3.6E-06 52.0 8.0 44 14-57 84-127 (311)
480 KOG0726 26S proteasome regulat 94.2 0.19 4.1E-06 49.3 7.7 42 2-43 192-246 (440)
481 TIGR03263 guanyl_kin guanylate 94.2 0.036 7.8E-07 52.9 3.0 24 17-40 2-25 (180)
482 PRK15453 phosphoribulokinase; 94.2 0.14 3E-06 51.3 7.0 28 14-41 3-30 (290)
483 TIGR03497 FliI_clade2 flagella 94.2 0.09 1.9E-06 56.5 6.2 27 15-41 136-162 (413)
484 PRK13947 shikimate kinase; Pro 94.2 0.043 9.4E-07 51.8 3.5 24 18-41 3-26 (171)
485 cd02020 CMPK Cytidine monophos 94.1 0.038 8.3E-07 50.6 3.0 24 18-41 1-24 (147)
486 COG4778 PhnL ABC-type phosphon 94.1 0.056 1.2E-06 48.5 3.7 34 17-53 38-71 (235)
487 PRK07594 type III secretion sy 94.1 0.082 1.8E-06 56.8 5.7 96 15-121 154-257 (433)
488 PRK05688 fliI flagellum-specif 94.1 0.11 2.3E-06 56.1 6.6 95 15-121 167-270 (451)
489 COG2019 AdkA Archaeal adenylat 94.1 0.05 1.1E-06 48.7 3.3 49 16-76 4-52 (189)
490 PRK12339 2-phosphoglycerate ki 94.1 0.049 1.1E-06 52.2 3.7 25 16-40 3-27 (197)
491 cd03285 ABC_MSH2_euk MutS2 hom 94.0 0.14 3.1E-06 50.3 7.0 25 15-39 29-53 (222)
492 PRK14530 adenylate kinase; Pro 94.0 0.048 1E-06 53.7 3.6 25 17-41 4-28 (215)
493 PRK14529 adenylate kinase; Pro 94.0 0.18 4E-06 49.2 7.5 24 19-42 3-26 (223)
494 cd03243 ABC_MutS_homologs The 94.0 0.12 2.6E-06 50.3 6.3 24 17-40 30-53 (202)
495 COG1124 DppF ABC-type dipeptid 94.0 0.044 9.6E-07 52.7 3.1 27 15-41 32-58 (252)
496 PRK07196 fliI flagellum-specif 94.0 0.1 2.2E-06 56.1 6.2 26 15-40 154-179 (434)
497 PRK11608 pspF phage shock prot 94.0 0.18 3.9E-06 53.0 8.0 39 17-57 30-68 (326)
498 PRK05057 aroK shikimate kinase 94.0 0.056 1.2E-06 50.8 3.8 26 16-41 4-29 (172)
499 PRK09302 circadian clock prote 94.0 0.37 8.1E-06 54.4 11.0 102 15-120 30-141 (509)
500 PRK00300 gmk guanylate kinase; 93.9 0.053 1.2E-06 53.0 3.7 27 15-41 4-30 (205)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9.1e-61 Score=546.10 Aligned_cols=578 Identities=28% Similarity=0.402 Sum_probs=423.7
Q ss_pred chHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhh-hccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchh
Q 002939 2 STLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAK-KDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEI 80 (864)
Q Consensus 2 ~~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~-~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 80 (864)
..++++.+.|.+++.++++|+||||+||||||++++++.. ++.+||.++||.||+.++...++++|++.++......+
T Consensus 165 ~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~- 243 (889)
T KOG4658|consen 165 TMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWE- 243 (889)
T ss_pred HHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccc-
Confidence 4678899999988889999999999999999999999988 89999999999999999999999999999977433111
Q ss_pred hhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchhccccccCCCCCCCCCcEEEEEeCChHHHhh-cC-CceE
Q 002939 81 ADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDLDLEKVGVPSGNDWRGCKVLLTARDRHVLGS-IG-SKTF 158 (864)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~~~-~~-~~~~ 158 (864)
.....+....+.+.|. ++||+||+||||+..+|+.+..+++...+||+|++|||+++|+.. ++ ...+
T Consensus 244 ----------~~~~~~~~~~i~~~L~-~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~ 312 (889)
T KOG4658|consen 244 ----------DKEEDELASKLLNLLE-GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPI 312 (889)
T ss_pred ----------hhhHHHHHHHHHHHhc-cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccc
Confidence 1223567778888885 899999999999999999999999998899999999999999997 66 7889
Q ss_pred EcCCCCHHHHHHHHHHhhCCC--CCCCcchHHHHHHHHhcCCcchHHHHHHHHhccCCChhHHHHHHHHhcCCCCCCc--
Q 002939 159 QIDVLNEEEAWTLFKKMTGDC--AEKGELNFVAIDITKECGGLPIAIVTLAKALRNKSCVSAWKDALRQLKRPSPGNF-- 234 (864)
Q Consensus 159 ~l~~L~~~e~~~l~~~~~~~~--~~~~~~~~~~~~i~~~~~g~Pla~~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~~-- 234 (864)
+++.|+.+|||++|.+.+++. ...+.+.++|++++++|+|+|||+.++|+.++.+.+..+|+++.+.+......+.
T Consensus 313 ~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~ 392 (889)
T KOG4658|consen 313 EVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSG 392 (889)
T ss_pred cccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCc
Confidence 999999999999999999544 3345589999999999999999999999999999899999999998866522222
Q ss_pred -hH-------------------HHH-----------------------HhhhccchHHHHHHHHHhHHHHHHHhcccccc
Q 002939 235 -DG-------------------VLA-----------------------KTLEGIDTVEEARDKVCTSVQELKDACLLLDG 271 (864)
Q Consensus 235 -~~-------------------~l~-----------------------~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 271 (864)
.. ||+ ||+.+.+..+.+++.+..|+.+|++++|++..
T Consensus 393 ~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~ 472 (889)
T KOG4658|consen 393 MEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEE 472 (889)
T ss_pred hhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhc
Confidence 11 222 55555455666788899999999999999866
Q ss_pred c---CCceEEecHHHHHHHHHHhc-----ccceEEEEecCCCccchhhhhhhccceEEEeecCCccCCCCCCcCCCceEE
Q 002939 272 E---NSDWFSMHDVVRDVAISIAS-----RDRRVFTMRNEVDPRKWADKYLLKKCSTISLHGNNISEIPQGWECPQLEFF 343 (864)
Q Consensus 272 ~---~~~~~~mh~li~~~~~~~~~-----~e~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L 343 (864)
+ +..+|.|||+||++|.++++ .++.++ ..+...+..+....+..+|++++.+|.+..++....++.|++|
T Consensus 473 ~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv--~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tL 550 (889)
T KOG4658|consen 473 RDEGRKETVKMHDVVREMALWIASDFGKQEENQIV--SDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTL 550 (889)
T ss_pred ccccceeEEEeeHHHHHHHHHHhccccccccceEE--ECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceE
Confidence 5 34699999999999999999 666443 3322223344444567899999999999999999999999999
Q ss_pred EecCCCCCCCCCCchhhcCCCCceEEEEecc-ccccCCcccccCCCccEEEecCcccccc-ccccccCcccEEeCCCCC-
Q 002939 344 YIFAPEDSPLKIPDNIFMGMPKLKVLLFIRM-RLLSLPSSIRLLTDLRTLCLDGCKLEDI-RIIGELKELEILSLQGCD- 420 (864)
Q Consensus 344 ~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~-~i~~lp~~~~~l~~L~~L~L~~~~l~~l-~~~~~l~~L~~L~l~~~~- 420 (864)
.+..+......++..+|..++.||+|||++| .+.++|..+++|.+||+|+++++.+..+ .++++|+.|.+|++..+.
T Consensus 551 ll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~ 630 (889)
T KOG4658|consen 551 LLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGR 630 (889)
T ss_pred EEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccc
Confidence 9988543345788888999999999999977 4679999999999999999999999988 569999999999999885
Q ss_pred CccCchhhccccccceecccccc-cccccChhhhhcCcccceeecccccc--ccccccCCcchhhhcCCCCccCCCCccC
Q 002939 421 IEHLPREIGQLTQLKLLDLSYCF-ELKVIAPNVLSNLSQLEELYMATCCI--KWEISNCSLLEEIVGKEGGVEADPSFVF 497 (864)
Q Consensus 421 i~~lp~~~~~l~~L~~L~l~~~~-~l~~~~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~~L~~L~~~~~~~~~~~~~~~ 497 (864)
+..+|.....|++|++|.+.... ..+...-..+.++.+|+.+....... ...+..+..|.++
T Consensus 631 l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~--------------- 695 (889)
T KOG4658|consen 631 LESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSL--------------- 695 (889)
T ss_pred cccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHH---------------
Confidence 44556666679999999887654 11111122233444444444322221 0011111122111
Q ss_pred cccceecccccccccccccccccccCCCcceEEEeeCCCcccccccccccccccccCcccccCCCccccccchhhhcCCc
Q 002939 498 PRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNL 577 (864)
Q Consensus 498 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 577 (864)
.+.+.+.++.. .........+.+|+.|.|.+|............. .....++++
T Consensus 696 --~~~l~~~~~~~---~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~---------------------~~~~~f~~l 749 (889)
T KOG4658|consen 696 --LQSLSIEGCSK---RTLISSLGSLGNLEELSILDCGISEIVIEWEESL---------------------IVLLCFPNL 749 (889)
T ss_pred --hHhhhhccccc---ceeecccccccCcceEEEEcCCCchhhccccccc---------------------chhhhHHHH
Confidence 11111111111 1111123456788888888887654321100000 000025566
Q ss_pred ceeecccccccccccccccCcccccCccEEEeecCCccccchhHHHHcccccEEEEEcccc
Q 002939 578 EELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSY 638 (864)
Q Consensus 578 ~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 638 (864)
..+.+.+|......... ...++|+.|.+.+|...+.|......+..+..+.+..+.+
T Consensus 750 ~~~~~~~~~~~r~l~~~----~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~ 806 (889)
T KOG4658|consen 750 SKVSILNCHMLRDLTWL----LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKL 806 (889)
T ss_pred HHHHhhccccccccchh----hccCcccEEEEecccccccCCCHHHHhhhcccEEeccccc
Confidence 66667666533322212 2257888888888877777666666777676655554444
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.2e-58 Score=558.90 Aligned_cols=435 Identities=21% Similarity=0.361 Sum_probs=291.9
Q ss_pred hHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEc---cCC---C--------C-hHHHHH
Q 002939 3 TLKNVQNALL--DPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEV---SET---P--------D-IGKIQG 65 (864)
Q Consensus 3 ~~~~i~~~l~--~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~---~~~---~--------~-~~~~~~ 65 (864)
.++++..+|. .+++++|+||||||+||||||+++|++... +|++.+|++. +.. + . ...+++
T Consensus 192 ~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~ 269 (1153)
T PLN03210 192 HIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQR 269 (1153)
T ss_pred HHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeeccccccchhhcccccccccchhHHHHH
Confidence 4566666664 467899999999999999999999998765 4888888752 111 0 0 122334
Q ss_pred HHHHHhCCccccchhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchhccccccCCCCCCCCCcEEEEEeC
Q 002939 66 ELADQLGMKFSQGEIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDLDLEKVGVPSGNDWRGCKVLLTAR 145 (864)
Q Consensus 66 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR 145 (864)
+++.++..... . .. .....+++++. ++|+||||||||+..+|+.+.....+.++||+||||||
T Consensus 270 ~~l~~il~~~~---------~------~~-~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTr 332 (1153)
T PLN03210 270 AFLSEILDKKD---------I------KI-YHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITK 332 (1153)
T ss_pred HHHHHHhCCCC---------c------cc-CCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeC
Confidence 44444321111 0 00 01234566675 89999999999999999999776666678999999999
Q ss_pred ChHHHhhcC-CceEEcCCCCHHHHHHHHHHhhCC-CCCCCcchHHHHHHHHhcCCcchHHHHHHHHhccCCChhHHHHHH
Q 002939 146 DRHVLGSIG-SKTFQIDVLNEEEAWTLFKKMTGD-CAEKGELNFVAIDITKECGGLPIAIVTLAKALRNKSCVSAWKDAL 223 (864)
Q Consensus 146 ~~~v~~~~~-~~~~~l~~L~~~e~~~l~~~~~~~-~~~~~~~~~~~~~i~~~~~g~Pla~~~~~~~l~~~~~~~~w~~~l 223 (864)
++.++..++ ..+|+++.+++++||++|.++|.. ..+..++.+++.+|+++|+|+|||++++|++|+.+ +..+|+.++
T Consensus 333 d~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l 411 (1153)
T PLN03210 333 DKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDML 411 (1153)
T ss_pred cHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHH
Confidence 999998776 789999999999999999999943 33445678899999999999999999999999987 688999999
Q ss_pred HHhcCCCCCCchH----------------HHH---HhhhccchHHHHHHH-------HHhHHHHHHHhcccccccCCceE
Q 002939 224 RQLKRPSPGNFDG----------------VLA---KTLEGIDTVEEARDK-------VCTSVQELKDACLLLDGENSDWF 277 (864)
Q Consensus 224 ~~l~~~~~~~~~~----------------~l~---~~~~~~~~~~~~~~~-------~~~~~~~L~~~~l~~~~~~~~~~ 277 (864)
++++......+.. +|+ .++.+.. .+.+... ....++.|++++|++.. .+++
T Consensus 412 ~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~-~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~--~~~~ 488 (1153)
T PLN03210 412 PRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEK-VNDIKLLLANSDLDVNIGLKNLVDKSLIHVR--EDIV 488 (1153)
T ss_pred HHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCC-HHHHHHHHHhcCCCchhChHHHHhcCCEEEc--CCeE
Confidence 9987654332222 222 4444432 2222111 12358899999999753 4689
Q ss_pred EecHHHHHHHHHHhcccceEEEEecCCCccchhhhhhh---------ccceEEEeecCCccCC--CCC--CcCCCceEEE
Q 002939 278 SMHDVVRDVAISIASRDRRVFTMRNEVDPRKWADKYLL---------KKCSTISLHGNNISEI--PQG--WECPQLEFFY 344 (864)
Q Consensus 278 ~mh~li~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~---------~~l~~L~l~~~~~~~~--~~~--~~~~~L~~L~ 344 (864)
.|||++|++|+.++.++. ..++++.+.|...++. .+++.+.+....+..+ ... ..+++|+.|.
T Consensus 489 ~MHdLl~~~~r~i~~~~~----~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~ 564 (1153)
T PLN03210 489 EMHSLLQEMGKEIVRAQS----NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLK 564 (1153)
T ss_pred EhhhHHHHHHHHHHHhhc----CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEE
Confidence 999999999999988764 1333444566554432 2345555544443321 111 1566777776
Q ss_pred ecCCCC-----CCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEecCcccccc-ccccccCcccEEeCCC
Q 002939 345 IFAPED-----SPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDI-RIIGELKELEILSLQG 418 (864)
Q Consensus 345 l~~~~~-----~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l-~~~~~l~~L~~L~l~~ 418 (864)
+..+.. ....+|..+..-.++||.|++.++.+..+|..| .+.+|+.|++.+|.+..+ ..+..+++|++|++++
T Consensus 565 ~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~ 643 (1153)
T PLN03210 565 FYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRG 643 (1153)
T ss_pred EecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCC
Confidence 654321 112344444222345777777777777777666 456777777777776666 4566677777777776
Q ss_pred C-CCccCchhhccccccceecccccccccccChhhhhcCcccceeecccc
Q 002939 419 C-DIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATC 467 (864)
Q Consensus 419 ~-~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 467 (864)
+ .+..+| .+..+++|++|++++|..+..+|.. +.++++|+.|++++|
T Consensus 644 ~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c 691 (1153)
T PLN03210 644 SKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRC 691 (1153)
T ss_pred CCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCC
Confidence 6 355666 3666777777777777666666544 667777777775543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.8e-33 Score=343.46 Aligned_cols=472 Identities=22% Similarity=0.226 Sum_probs=322.7
Q ss_pred hhccceEEEeecCCcc-CCCCCC--cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccc-cCCcccccCCCc
Q 002939 314 LLKKCSTISLHGNNIS-EIPQGW--ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLL-SLPSSIRLLTDL 389 (864)
Q Consensus 314 ~~~~l~~L~l~~~~~~-~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~~~~l~~L 389 (864)
.++.++.|++++|.+. .+|... .+++|++|++++++.. ..+|. ..+++|++|+|++|.+. .+|..++++++|
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~-~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT-GSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc-cccCc---cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence 4677888888888876 677654 6788888888775443 23443 35778888888888776 567778888888
Q ss_pred cEEEecCcccccc--ccccccCcccEEeCCCCCCc-cCchhhccccccceecccccccccccChhhhhcCcccceeeccc
Q 002939 390 RTLCLDGCKLEDI--RIIGELKELEILSLQGCDIE-HLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMAT 466 (864)
Q Consensus 390 ~~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 466 (864)
++|++++|.+... ..++++++|++|++++|.+. .+|..++.+++|++|++++|. +....+..++++++|++|++++
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN-LSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc-cCCcCChhHhcCCCCCEEECcC
Confidence 8888888876543 45778888888888888776 567788888888888888876 4433344477888888888887
Q ss_pred cccc----cccccCCcchhhhcCCCCccCCCC---ccCcccceecccccccccccccccccccCCCcceEEEeeCCCccc
Q 002939 467 CCIK----WEISNCSLLEEIVGKEGGVEADPS---FVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKC 539 (864)
Q Consensus 467 ~~~~----~~~~~~~~L~~L~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 539 (864)
|.+. ..++++++|+.|.++.+.+.+... ..+++|+.|+++++.-....+. ....+++|+.|++.+|.....
T Consensus 246 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~l~~n~~~~~ 323 (968)
T PLN00113 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE--LVIQLQNLEILHLFSNNFTGK 323 (968)
T ss_pred ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh--hHcCCCCCcEEECCCCccCCc
Confidence 7643 357777888888887776654322 2456777777776542222221 134567778888777765554
Q ss_pred cccccccccccc---ccCcccccCCCccccccchhhhcCCcceeecccccccccccccccCccc--ccCccEEEeecCCc
Q 002939 540 FSSELYSLHENN---EEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHL--LNKLKVLAIENDKS 614 (864)
Q Consensus 540 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~--~~~L~~L~l~~~~~ 614 (864)
.|..+..+..+. ...+-... ........+++|+.|++++|. ..+..|... +++|+.|++++|.+
T Consensus 324 ~~~~~~~l~~L~~L~L~~n~l~~------~~p~~l~~~~~L~~L~Ls~n~-----l~~~~p~~~~~~~~L~~L~l~~n~l 392 (968)
T PLN00113 324 IPVALTSLPRLQVLQLWSNKFSG------EIPKNLGKHNNLTVLDLSTNN-----LTGEIPEGLCSSGNLFKLILFSNSL 392 (968)
T ss_pred CChhHhcCCCCCEEECcCCCCcC------cCChHHhCCCCCcEEECCCCe-----eEeeCChhHhCcCCCCEEECcCCEe
Confidence 444333322211 11110000 111122346788888888885 333444433 56888888888888
Q ss_pred cccchhHHHHcccccEEEEEccccccccccccchhhhcccccccceeecCCCcCccccccccccccccccccCccEEEee
Q 002939 615 EVLAPDLLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDIS 694 (864)
Q Consensus 615 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~ 694 (864)
....+..+..+++|+.|++++|.++ +.+|..+..+++|+.|+++++. +... .......+++|+.|+++
T Consensus 393 ~~~~p~~~~~~~~L~~L~L~~n~l~------~~~p~~~~~l~~L~~L~Ls~N~-l~~~-----~~~~~~~l~~L~~L~L~ 460 (968)
T PLN00113 393 EGEIPKSLGACRSLRRVRLQDNSFS------GELPSEFTKLPLVYFLDISNNN-LQGR-----INSRKWDMPSLQMLSLA 460 (968)
T ss_pred cccCCHHHhCCCCCCEEECcCCEee------eECChhHhcCCCCCEEECcCCc-ccCc-----cChhhccCCCCcEEECc
Confidence 8777777888899999999988884 5667778888999999998853 3322 12223457899999999
Q ss_pred cccccccccCCccccCCccEEEEecCcCceeeechhhhhhhccccEEEecCccchHHhhhccccccCcceeeccccCeee
Q 002939 695 FCRNLKNLLPSSASFRCLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLD 774 (864)
Q Consensus 695 ~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 774 (864)
+|.-...+ +.....++|+.|++++| .+.... +..+..+++|++|++++|.....+| ..+. .+++|+.|+
T Consensus 461 ~n~~~~~~-p~~~~~~~L~~L~ls~n-~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~-------~l~~L~~L~ 529 (968)
T PLN00113 461 RNKFFGGL-PDSFGSKRLENLDLSRN-QFSGAV-PRKLGSLSELMQLKLSENKLSGEIP-DELS-------SCKKLVSLD 529 (968)
T ss_pred Cceeeeec-CcccccccceEEECcCC-ccCCcc-ChhhhhhhccCEEECcCCcceeeCC-hHHc-------CccCCCEEE
Confidence 96544444 44445688999999986 454432 4567788999999999976655555 3333 378999999
Q ss_pred cCccccccccccCCceeecCccceeecccCCCccccccCcccCCccceEeeCCc
Q 002939 775 LNRLQSLTTFCSANYTFKFPSLCYLSVSACPKMKIFCRGVLSAPRLEKVRLNDQ 828 (864)
Q Consensus 775 l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~lp~~~~~~~~L~~l~l~~~ 828 (864)
|++| .++...+ ..+.++++|+.|++++|+....+|..+..+++|+.|+++++
T Consensus 530 Ls~N-~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 581 (968)
T PLN00113 530 LSHN-QLSGQIP-ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581 (968)
T ss_pred CCCC-cccccCC-hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCC
Confidence 9995 5554332 34667899999999999988889988888899999999843
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.3e-33 Score=341.21 Aligned_cols=471 Identities=21% Similarity=0.203 Sum_probs=339.4
Q ss_pred ccceEEEeecCCcc-CCCCCC-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccc-cCCcccccCCCccEE
Q 002939 316 KKCSTISLHGNNIS-EIPQGW-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLL-SLPSSIRLLTDLRTL 392 (864)
Q Consensus 316 ~~l~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~~~~l~~L~~L 392 (864)
.+++.|++++|.+. .++..+ .+++|+.|+++++... ..+|..+|..+++||+|+|++|.+. .+|. +.+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~-~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS-GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC-CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 47999999999887 444444 8899999999985543 4789888889999999999999987 4554 578999999
Q ss_pred EecCcccccc--ccccccCcccEEeCCCCCCc-cCchhhccccccceecccccccccccChhhhhcCcccceeecccccc
Q 002939 393 CLDGCKLEDI--RIIGELKELEILSLQGCDIE-HLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCI 469 (864)
Q Consensus 393 ~L~~~~l~~l--~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 469 (864)
+|++|.+... ..++++++|++|++++|.+. .+|..++++++|++|++++|. +....+..++++++|++|++++|.+
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ-LVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC-CcCcCChHHcCcCCccEEECcCCcc
Confidence 9999998753 56999999999999999887 789999999999999999997 5443345589999999999999975
Q ss_pred c----cccccCCcchhhhcCCCCccCCCC---ccCcccceecccccccccccccccccccCCCcceEEEeeCCCcccccc
Q 002939 470 K----WEISNCSLLEEIVGKEGGVEADPS---FVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSS 542 (864)
Q Consensus 470 ~----~~~~~~~~L~~L~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 542 (864)
. ..++++++|+.|+++.+.+.+... ..+++|+.|+++++.-....+. ....+++|+.|++++|.....+|.
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP--SIFSLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch--hHhhccCcCEEECcCCeeccCCCh
Confidence 4 468899999999999998765333 3567899999988643322222 234678999999998876555554
Q ss_pred ccccccccc---ccCcccccCCCccccccchhhhcCCcceeecccccccccccccccCccc--ccCccEEEeecCCcccc
Q 002939 543 ELYSLHENN---EEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHL--LNKLKVLAIENDKSEVL 617 (864)
Q Consensus 543 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~--~~~L~~L~l~~~~~~~~ 617 (864)
.+..+..+. ..++.... ........+++|+.|++++|. +.+..|... +++|+.|++++|.+...
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~------~~~~~~~~l~~L~~L~L~~n~-----l~~~~p~~l~~~~~L~~L~Ls~n~l~~~ 371 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTG------KIPVALTSLPRLQVLQLWSNK-----FSGEIPKNLGKHNNLTVLDLSTNNLTGE 371 (968)
T ss_pred hHcCCCCCcEEECCCCccCC------cCChhHhcCCCCCEEECcCCC-----CcCcCChHHhCCCCCcEEECCCCeeEee
Confidence 433322211 11110000 111122346777777777774 333344322 56777777777777665
Q ss_pred chhHHHHcccccEEEEEccccccccccccchhhhcccccccceeecCCCcCccccccccccccccccccCccEEEeeccc
Q 002939 618 APDLLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCR 697 (864)
Q Consensus 618 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 697 (864)
.+..+..+++|+.|++++|.+ .+.+|..+..+++|+.|++++|.--..+ +.....+++|+.|++++|
T Consensus 372 ~p~~~~~~~~L~~L~l~~n~l------~~~~p~~~~~~~~L~~L~L~~n~l~~~~------p~~~~~l~~L~~L~Ls~N- 438 (968)
T PLN00113 372 IPEGLCSSGNLFKLILFSNSL------EGEIPKSLGACRSLRRVRLQDNSFSGEL------PSEFTKLPLVYFLDISNN- 438 (968)
T ss_pred CChhHhCcCCCCEEECcCCEe------cccCCHHHhCCCCCCEEECcCCEeeeEC------ChhHhcCCCCCEEECcCC-
Confidence 555566777777887777777 3556777778888888888885422222 233456788889999885
Q ss_pred cccc-ccCCccccCCccEEEEecCcCceeeechhhhhhhccccEEEecCccchHHhhhccccccCcceeeccccCeeecC
Q 002939 698 NLKN-LLPSSASFRCLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLN 776 (864)
Q Consensus 698 ~l~~-~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 776 (864)
.+.+ ++.....+++|+.|++++|.-...++ .. ...++|+.|++++|.....++ ..+. .+++|+.|+++
T Consensus 439 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p--~~-~~~~~L~~L~ls~n~l~~~~~-~~~~-------~l~~L~~L~Ls 507 (968)
T PLN00113 439 NLQGRINSRKWDMPSLQMLSLARNKFFGGLP--DS-FGSKRLENLDLSRNQFSGAVP-RKLG-------SLSELMQLKLS 507 (968)
T ss_pred cccCccChhhccCCCCcEEECcCceeeeecC--cc-cccccceEEECcCCccCCccC-hhhh-------hhhccCEEECc
Confidence 4444 33334578889999998875433332 22 245789999999876544444 3333 38899999999
Q ss_pred ccccccccccCCceeecCccceeecccCCCccccccCcccCCccceEeeCCcc
Q 002939 777 RLQSLTTFCSANYTFKFPSLCYLSVSACPKMKIFCRGVLSAPRLEKVRLNDQN 829 (864)
Q Consensus 777 ~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~lp~~~~~~~~L~~l~l~~~~ 829 (864)
+|.-...+|. .+.++++|++|+|++|.....+|..+..+++|+.|+++++.
T Consensus 508 ~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 558 (968)
T PLN00113 508 ENKLSGEIPD--ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ 558 (968)
T ss_pred CCcceeeCCh--HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCc
Confidence 9543335552 36689999999999999888899989899999999998544
No 5
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.97 E-value=6.3e-31 Score=274.12 Aligned_cols=217 Identities=35% Similarity=0.636 Sum_probs=172.7
Q ss_pred chHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccch
Q 002939 2 STLKNVQNALLD--PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGE 79 (864)
Q Consensus 2 ~~~~~i~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~ 79 (864)
.++++|.++|.+ ++.++|+|+||||+||||||++++++...+.+|+.++|+++++..+..+++..|+.+++......
T Consensus 3 ~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~- 81 (287)
T PF00931_consen 3 KEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSI- 81 (287)
T ss_dssp HHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STS-
T ss_pred HHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccc-
Confidence 578999999998 78999999999999999999999999778888999999999999999999999999998763311
Q ss_pred hhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchhccccccCCCCCCCCCcEEEEEeCChHHHhhcC--Cce
Q 002939 80 IADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDLDLEKVGVPSGNDWRGCKVLLTARDRHVLGSIG--SKT 157 (864)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~~~~~--~~~ 157 (864)
....+..+....+.+.+. ++++||||||||+..+|+.+...++....|++||||||+..++...+ ...
T Consensus 82 ---------~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~ 151 (287)
T PF00931_consen 82 ---------SDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKV 151 (287)
T ss_dssp ---------SCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEE
T ss_pred ---------ccccccccccccchhhhc-cccceeeeeeeccccccccccccccccccccccccccccccccccccccccc
Confidence 113456667788888886 77999999999999999988877776677899999999998887655 578
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCC--CCCcchHHHHHHHHhcCCcchHHHHHHHHhccCCChhHHHHHHHHhcCC
Q 002939 158 FQIDVLNEEEAWTLFKKMTGDCA--EKGELNFVAIDITKECGGLPIAIVTLAKALRNKSCVSAWKDALRQLKRP 229 (864)
Q Consensus 158 ~~l~~L~~~e~~~l~~~~~~~~~--~~~~~~~~~~~i~~~~~g~Pla~~~~~~~l~~~~~~~~w~~~l~~l~~~ 229 (864)
+++++|+.+||+++|.+.++... ..+..++.+.+|+++|+|+|+|++++|++++.+.+..+|+.+++++...
T Consensus 152 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~ 225 (287)
T PF00931_consen 152 IELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENS 225 (287)
T ss_dssp EECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999985433 3455677899999999999999999999997655678899999886654
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=1.3e-26 Score=237.23 Aligned_cols=375 Identities=20% Similarity=0.234 Sum_probs=198.3
Q ss_pred ceEEEEeccccccC-CcccccCCCccEEEecCccccccccccccC-cccEEeCCCCCCccC-chhhccccccceeccccc
Q 002939 366 LKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDGCKLEDIRIIGELK-ELEILSLQGCDIEHL-PREIGQLTQLKLLDLSYC 442 (864)
Q Consensus 366 Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~l~~~~~l~-~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~ 442 (864)
-+.||+++|.+..+ +..|.++++|+.+++..|.++.++.++... +|+.|+|.+|.|.++ .+.+..++.|+.|||+.|
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 45566666666655 444666667777777666666665555443 366677776666655 345666666777777766
Q ss_pred ccccccChhhhhcCcccceeecccccccc----ccccCCcchhhhcCCCCccCCCCccCcccceeccccccccccccccc
Q 002939 443 FELKVIAPNVLSNLSQLEELYMATCCIKW----EISNCSLLEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGI 518 (864)
Q Consensus 443 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 518 (864)
. +..++...+..-.++++|++++|.|.. .|..+.+|-.|.++.|.++..+...|++
T Consensus 160 ~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~------------------- 219 (873)
T KOG4194|consen 160 L-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKR------------------- 219 (873)
T ss_pred h-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhh-------------------
Confidence 4 666665556555666777666665542 2222333333333333333322222221
Q ss_pred ccccCCCcceEEEeeCCCcccccccccccccccccCcccccCCCccccccchhhhcCCcceeecccccccccccccccCc
Q 002939 519 HTLECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPD 598 (864)
Q Consensus 519 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~ 598 (864)
+++|+.|++..+. ++... ...+..+++|+.|.+..| ++...-+|.|-.
T Consensus 220 ----L~~L~~LdLnrN~-irive--------------------------~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~ 267 (873)
T KOG4194|consen 220 ----LPKLESLDLNRNR-IRIVE--------------------------GLTFQGLPSLQNLKLQRN-DISKLDDGAFYG 267 (873)
T ss_pred ----cchhhhhhccccc-eeeeh--------------------------hhhhcCchhhhhhhhhhc-CcccccCcceee
Confidence 2222222222110 00000 001112455555555555 232222222211
Q ss_pred ccccCccEEEeecCCccccchhHHHHcccccEEEEEccccccccccccchhhhcccccccceeecCCCcCcccccccccc
Q 002939 599 HLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEEN 678 (864)
Q Consensus 599 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 678 (864)
+.++++|++..|.+......++-++..|+.|+++.|.| +.| .
T Consensus 268 --l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI-------------------------------~ri-----h 309 (873)
T KOG4194|consen 268 --LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI-------------------------------QRI-----H 309 (873)
T ss_pred --ecccceeecccchhhhhhcccccccchhhhhccchhhh-------------------------------hee-----e
Confidence 44455555555544444444444444444444444444 333 1
Q ss_pred ccccccccCccEEEeecccccccccCC-ccccCCccEEEEecCcCceeeechhhhhhhccccEEEecCccc---hHHhhh
Q 002939 679 SKLNMIFQNLETLDISFCRNLKNLLPS-SASFRCLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDGCSK---ITELVV 754 (864)
Q Consensus 679 ~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~---l~~~~~ 754 (864)
.......++|++|++++ +.++.+++. +..+..|++|.++. +.+..+ ....+..+.+|++|+++++.. +++-.
T Consensus 310 ~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l-~e~af~~lssL~~LdLr~N~ls~~IEDaa- 385 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSH-NSIDHL-AEGAFVGLSSLHKLDLRSNELSWCIEDAA- 385 (873)
T ss_pred cchhhhcccceeEeccc-cccccCChhHHHHHHHhhhhcccc-cchHHH-HhhHHHHhhhhhhhcCcCCeEEEEEecch-
Confidence 22233445555555555 445444332 23445566666654 344443 234555666777777766421 12211
Q ss_pred ccccccCcceeeccccCeeecCccccccccccCCceeecCccceeecccCCCccccccCcccCCccceEeeC-Ccccccc
Q 002939 755 AIEADEANEEIFFPKLESLDLNRLQSLTTFCSANYTFKFPSLCYLSVSACPKMKIFCRGVLSAPRLEKVRLN-DQNYWDA 833 (864)
Q Consensus 755 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~lp~~~~~~~~L~~l~l~-~~~~~~~ 833 (864)
..+. .+++|+.|.+.| ++|++++.. .+.++++||.|++.+.+..+.-|..|..+ .|++|.++ ....++.
T Consensus 386 ~~f~-------gl~~LrkL~l~g-Nqlk~I~kr-Afsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 386 VAFN-------GLPSLRKLRLTG-NQLKSIPKR-AFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC 455 (873)
T ss_pred hhhc-------cchhhhheeecC-ceeeecchh-hhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEec
Confidence 1222 389999999999 899999865 46689999999998877655557777655 89999988 3444444
Q ss_pred cHHHHHHHHHhh
Q 002939 834 DLNTIIQQSYYE 845 (864)
Q Consensus 834 ~~~~~l~~~~~~ 845 (864)
+ ...+++|.+.
T Consensus 456 q-l~Wl~qWl~~ 466 (873)
T KOG4194|consen 456 Q-LKWLAQWLYR 466 (873)
T ss_pred c-HHHHHHHHHh
Confidence 3 3456666555
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=2.4e-27 Score=243.96 Aligned_cols=375 Identities=24% Similarity=0.305 Sum_probs=250.8
Q ss_pred eEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEecCcccccc-ccccccCcccEEeCCCC
Q 002939 341 EFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDI-RIIGELKELEILSLQGC 419 (864)
Q Consensus 341 ~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l-~~~~~l~~L~~L~l~~~ 419 (864)
|-.++++|..+...+|.++ ..+++++-|.|.++.+..+|+.++.|.+|+.|.+++|++..+ ..++.|+.|+.++++.|
T Consensus 10 rGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 10 RGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN 88 (1255)
T ss_pred ecccccCCcCCCCcCchhH-HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc
Confidence 3344444444444566665 667777777777777777777777777777777777777766 55777777777777777
Q ss_pred CCc--cCchhhccccccceecccccccccccChhhhhcCcccceeeccccccccccccCCcchhhhcCCCCccCCCCccC
Q 002939 420 DIE--HLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKWEISNCSLLEEIVGKEGGVEADPSFVF 497 (864)
Q Consensus 420 ~i~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~ 497 (864)
++. .+|..+.++..|..|||++|+ +++.|.. +...+++-.|++++|.|.. .|...|
T Consensus 89 ~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~-LE~AKn~iVLNLS~N~Iet--------------------IPn~lf 146 (1255)
T KOG0444|consen 89 NLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTN-LEYAKNSIVLNLSYNNIET--------------------IPNSLF 146 (1255)
T ss_pred ccccCCCCchhcccccceeeecchhh-hhhcchh-hhhhcCcEEEEcccCcccc--------------------CCchHH
Confidence 665 567777777777777777775 7777665 6666677777766665431 111111
Q ss_pred cccceecccccccccccccccccccCCCcceEEEeeCCCcccccccccccccccccCcccccCCCccccccchhhhcCCc
Q 002939 498 PRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNL 577 (864)
Q Consensus 498 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 577 (864)
-+| ..|-.|++++ +.+..+|..... +.+|
T Consensus 147 inL-----------------------tDLLfLDLS~-NrLe~LPPQ~RR---------------------------L~~L 175 (1255)
T KOG0444|consen 147 INL-----------------------TDLLFLDLSN-NRLEMLPPQIRR---------------------------LSML 175 (1255)
T ss_pred Hhh-----------------------HhHhhhcccc-chhhhcCHHHHH---------------------------Hhhh
Confidence 111 1111222221 122222221111 4566
Q ss_pred ceeecccccccccccccccCcccccCccEEEeecCCc--cccchhHHHHcccccEEEEEccccccccccccchhhhcccc
Q 002939 578 EELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKS--EVLAPDLLERFHNLVNLELADGSYKELFSNEGQVEKLVGKL 655 (864)
Q Consensus 578 ~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~--~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l 655 (864)
+.|.+++|+- .-+-...+|. +.+|++|++++++- ..+|+ .+..+.+|..+++++|++. .+|+.+-++
T Consensus 176 qtL~Ls~NPL-~hfQLrQLPs--mtsL~vLhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp-------~vPecly~l 244 (1255)
T KOG0444|consen 176 QTLKLSNNPL-NHFQLRQLPS--MTSLSVLHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLP-------IVPECLYKL 244 (1255)
T ss_pred hhhhcCCChh-hHHHHhcCcc--chhhhhhhcccccchhhcCCC-chhhhhhhhhccccccCCC-------cchHHHhhh
Confidence 6666666641 1111122333 56677777766542 33444 4788999999999999984 457778889
Q ss_pred cccceeecCCCcCccccccccccccccccccCccEEEeecccccccccCCccccCCccEEEEecCcCceeeechhhhhhh
Q 002939 656 ARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKNLLPSSASFRCLTKLSVWCCEQLINLVTSSAAKNL 735 (864)
Q Consensus 656 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l 735 (864)
++|+.|+||+ +.++.+.. ......+|+.|+++. +.++.+|.....++.|++|.+.+ ++++.-..|+.++.+
T Consensus 245 ~~LrrLNLS~-N~iteL~~------~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~-NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 245 RNLRRLNLSG-NKITELNM------TEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANN-NKLTFEGIPSGIGKL 315 (1255)
T ss_pred hhhheeccCc-Cceeeeec------cHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhcc-CcccccCCccchhhh
Confidence 9999999999 67777622 223467899999999 88999988888999999999886 677766667888999
Q ss_pred ccccEEEecCccchHHhhhccccccCcceeeccccCeeecCccccccccccCCceeecCccceeecccCCCccccccCcc
Q 002939 736 VQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFCSANYTFKFPSLCYLSVSACPKMKIFCRGVL 815 (864)
Q Consensus 736 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~lp~~~~ 815 (864)
..|+.+...+ ++++-+| .+++. ++.|+.|.+.. +.|-.+|. .++-++.|+.|+++..|++-.=|.-..
T Consensus 316 ~~Levf~aan-N~LElVP-EglcR-------C~kL~kL~L~~-NrLiTLPe--aIHlL~~l~vLDlreNpnLVMPPKP~d 383 (1255)
T KOG0444|consen 316 IQLEVFHAAN-NKLELVP-EGLCR-------CVKLQKLKLDH-NRLITLPE--AIHLLPDLKVLDLRENPNLVMPPKPND 383 (1255)
T ss_pred hhhHHHHhhc-cccccCc-hhhhh-------hHHHHHhcccc-cceeechh--hhhhcCCcceeeccCCcCccCCCCcch
Confidence 9999998888 6777777 45543 78999999986 88888884 467789999999999999886665332
Q ss_pred cCCccc
Q 002939 816 SAPRLE 821 (864)
Q Consensus 816 ~~~~L~ 821 (864)
.-.+|+
T Consensus 384 a~~~le 389 (1255)
T KOG0444|consen 384 ARKKLE 389 (1255)
T ss_pred hhhcce
Confidence 223444
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=1.3e-27 Score=233.84 Aligned_cols=452 Identities=22% Similarity=0.261 Sum_probs=313.1
Q ss_pred hhccceEEEeecCCccCCCCCC-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEE
Q 002939 314 LLKKCSTISLHGNNISEIPQGW-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTL 392 (864)
Q Consensus 314 ~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L 392 (864)
-+..+..+.++.|++..+|+.+ .+..+..++++.++.. .+|..+ ..+.+|+.|+.+.|.+..+|++++.+..|..|
T Consensus 66 nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls--~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS--ELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLEDL 142 (565)
T ss_pred cccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh--hccHHH-hhhhhhhhhhccccceeecCchHHHHhhhhhh
Confidence 3567888899999999888887 7778888888875444 577776 67889999999999999999999999999999
Q ss_pred EecCcccccc-ccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeeccccccc-
Q 002939 393 CLDGCKLEDI-RIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIK- 470 (864)
Q Consensus 393 ~L~~~~l~~l-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~- 470 (864)
+..+|++.++ +.++.+.+|..|++.+|+++++|....+++.|++||...|. ++.+|+. ++.+.+|..|++..|++.
T Consensus 143 ~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~-lg~l~~L~~LyL~~Nki~~ 220 (565)
T KOG0472|consen 143 DATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-LETLPPE-LGGLESLELLYLRRNKIRF 220 (565)
T ss_pred hccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-hhcCChh-hcchhhhHHHHhhhccccc
Confidence 9999998887 67889999999999999999888887779999999999986 8888887 899999999999998864
Q ss_pred -cccccCCcchhhhcCCCCccCCCCc---cCcccceecccccccccccccccccccCCCcceEEEeeCCCcccccccccc
Q 002939 471 -WEISNCSLLEEIVGKEGGVEADPSF---VFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYS 546 (864)
Q Consensus 471 -~~~~~~~~L~~L~~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 546 (864)
++|++|..|+++....|.+...+.. .++++..|++.+ ++++..+.. ..-+.+|++|++++ +.++.+|.+...
T Consensus 221 lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde--~clLrsL~rLDlSN-N~is~Lp~sLgn 296 (565)
T KOG0472|consen 221 LPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDE--ICLLRSLERLDLSN-NDISSLPYSLGN 296 (565)
T ss_pred CCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCchH--HHHhhhhhhhcccC-CccccCCccccc
Confidence 3799999999999888877665544 456777888877 567777664 33466788888886 456666665554
Q ss_pred cccccc---cCc-ccccCCCccccccchhhhcCCcceee----cccccccc----cccccccCcc-cccCccEEEeecCC
Q 002939 547 LHENNE---EGQ-LIDVPVPAQQSLFLVEKVLPNLEELR----LSNKKDIT----KIWQGQFPDH-LLNKLKVLAIENDK 613 (864)
Q Consensus 547 ~~~~~~---~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~----l~~~~~~~----~~~~~~~p~~-~~~~L~~L~l~~~~ 613 (864)
+ .+.. .|. +..+...-.. ......+++|+.-. ++....-+ ....+.+|.. ...+.+.|++++-.
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii~--~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q 373 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREIIS--KGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ 373 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHHc--ccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc
Confidence 3 1111 111 0000000000 00000122222200 00000000 0001111211 14478889999999
Q ss_pred ccccchhHHHHcc--cccEEEEEccccccccccccchhhhcccccccceeecCCCcCccccccccccccccccccCccEE
Q 002939 614 SEVLAPDLLERFH--NLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETL 691 (864)
Q Consensus 614 ~~~~~~~~~~~l~--~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L 691 (864)
++..|...|..-. -....+++.|++.++ |..+..+..+.+.-+.+.+.+..+ +.....+++|..|
T Consensus 374 lt~VPdEVfea~~~~~Vt~VnfskNqL~el-------Pk~L~~lkelvT~l~lsnn~isfv------~~~l~~l~kLt~L 440 (565)
T KOG0472|consen 374 LTLVPDEVFEAAKSEIVTSVNFSKNQLCEL-------PKRLVELKELVTDLVLSNNKISFV------PLELSQLQKLTFL 440 (565)
T ss_pred cccCCHHHHHHhhhcceEEEecccchHhhh-------hhhhHHHHHHHHHHHhhcCccccc------hHHHHhhhcceee
Confidence 9999988876443 467888889998554 444545555554444443444433 3334568899999
Q ss_pred EeecccccccccCCccccCCccEEEEecCcCceeeechhhhhhhccccEEEecCccchHHhhhccccccCcceeeccccC
Q 002939 692 DISFCRNLKNLLPSSASFRCLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLE 771 (864)
Q Consensus 692 ~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~ 771 (864)
++++ +-+.++|...+.+..|+.|+++. +....+ |.....+..|+ ..+...+++..+++.+..+ +.+|.
T Consensus 441 ~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~-NrFr~l--P~~~y~lq~lE-tllas~nqi~~vd~~~l~n-------m~nL~ 508 (565)
T KOG0472|consen 441 DLSN-NLLNDLPEEMGSLVRLQTLNLSF-NRFRML--PECLYELQTLE-TLLASNNQIGSVDPSGLKN-------MRNLT 508 (565)
T ss_pred eccc-chhhhcchhhhhhhhhheecccc-cccccc--hHHHhhHHHHH-HHHhccccccccChHHhhh-------hhhcc
Confidence 9998 77888888888888899999986 455544 23333333344 3444447787777665654 78899
Q ss_pred eeecCccccccccccCCceeecCccceeecccCC
Q 002939 772 SLDLNRLQSLTTFCSANYTFKFPSLCYLSVSACP 805 (864)
Q Consensus 772 ~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~ 805 (864)
.|++.+ +.+..+|+ .++++++|++|.+++.|
T Consensus 509 tLDL~n-Ndlq~IPp--~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 509 TLDLQN-NDLQQIPP--ILGNMTNLRHLELDGNP 539 (565)
T ss_pred eeccCC-CchhhCCh--hhccccceeEEEecCCc
Confidence 999998 88999985 48889999999998887
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=9.6e-26 Score=230.83 Aligned_cols=359 Identities=20% Similarity=0.255 Sum_probs=214.0
Q ss_pred hhccceEEEeecCCccCCCCC--CcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC-CcccccCCCcc
Q 002939 314 LLKKCSTISLHGNNISEIPQG--WECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLR 390 (864)
Q Consensus 314 ~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~ 390 (864)
.+...+.|++++|.+..+... .++++|+.+++.. +....+|... ....+|+.|+|.+|.|.++ .+.+..++.||
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~--N~Lt~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK--NELTRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeecc--chhhhccccc-ccccceeEEeeeccccccccHHHHHhHhhhh
Confidence 345677788888877766544 3777788777764 3444566522 3445588888888877776 44567777888
Q ss_pred EEEecCcccccc--ccccccCcccEEeCCCCCCccC-chhhccccccceecccccccccccChhhhhcCcccceeecccc
Q 002939 391 TLCLDGCKLEDI--RIIGELKELEILSLQGCDIEHL-PREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATC 467 (864)
Q Consensus 391 ~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 467 (864)
.|||+.|.|..+ ++|..-.++++|+|++|+|+.+ ...|..+.+|..|.|+.|. ++.+|...|.+|++|+.|++..|
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhcccc
Confidence 888888877776 5676667788888888887766 3356677788888888886 77788777777888888888777
Q ss_pred cccc----ccccCCcchhhhcCCCCccCCCC---ccCcccceecccccccccccccccccccCCCcceEEEeeCCCcccc
Q 002939 468 CIKW----EISNCSLLEEIVGKEGGVEADPS---FVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCF 540 (864)
Q Consensus 468 ~~~~----~~~~~~~L~~L~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 540 (864)
.+.- .|..+++|+.|.+..|.+..... +.+.+++.|++... ++.....+. ..+
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~-lfg------------------ 291 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGW-LFG------------------ 291 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhccc-ccc------------------
Confidence 6542 35666666666666665443221 22334444444331 111111110 111
Q ss_pred cccccccccccccCcccccCCCccccccchhhhcCCcceeecccccccccccccccCcccccCccEEEeecCCccccchh
Q 002939 541 SSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAPD 620 (864)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~~ 620 (864)
+..|+.|+++.|. +..+..... +..++|++|+++.|.++.+++.
T Consensus 292 ---------------------------------Lt~L~~L~lS~Na-I~rih~d~W--sftqkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 292 ---------------------------------LTSLEQLDLSYNA-IQRIHIDSW--SFTQKLKELDLSSNRITRLDEG 335 (873)
T ss_pred ---------------------------------cchhhhhccchhh-hheeecchh--hhcccceeEeccccccccCChh
Confidence 5566666666663 222111111 1156677777777777777766
Q ss_pred HHHHcccccEEEEEccccccccccccchhhhcccccccceeecCCCcCccccccccccccccccccCccEEEeecccccc
Q 002939 621 LLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLK 700 (864)
Q Consensus 621 ~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 700 (864)
.|..+..|++|.++.|++..+- ...+..+.+|++|+|+++ .+. |..+........+++|+.|.+.+ +.++
T Consensus 336 sf~~L~~Le~LnLs~Nsi~~l~------e~af~~lssL~~LdLr~N-~ls--~~IEDaa~~f~gl~~LrkL~l~g-Nqlk 405 (873)
T KOG4194|consen 336 SFRVLSQLEELNLSHNSIDHLA------EGAFVGLSSLHKLDLRSN-ELS--WCIEDAAVAFNGLPSLRKLRLTG-NQLK 405 (873)
T ss_pred HHHHHHHhhhhcccccchHHHH------hhHHHHhhhhhhhcCcCC-eEE--EEEecchhhhccchhhhheeecC-ceee
Confidence 6666777777777776664331 123455666777777663 222 11222333444566777777776 5666
Q ss_pred cccCC-ccccCCccEEEEecCcCceeeechhhhhhhccccEEEecC
Q 002939 701 NLLPS-SASFRCLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDG 745 (864)
Q Consensus 701 ~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 745 (864)
.++.. +.++++|+.|++.+ +.+.++ .+..|..+ .|++|.+..
T Consensus 406 ~I~krAfsgl~~LE~LdL~~-NaiaSI-q~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 406 SIPKRAFSGLEALEHLDLGD-NAIASI-QPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ecchhhhccCcccceecCCC-Ccceee-cccccccc-hhhhhhhcc
Confidence 65443 35666777777765 345444 23444555 566665443
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=9.8e-24 Score=257.07 Aligned_cols=362 Identities=25% Similarity=0.319 Sum_probs=225.9
Q ss_pred CCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccc-------cCCcccccCC-CccEEEecCccccccccccccC
Q 002939 338 PQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLL-------SLPSSIRLLT-DLRTLCLDGCKLEDIRIIGELK 409 (864)
Q Consensus 338 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-------~lp~~~~~l~-~L~~L~L~~~~l~~l~~~~~l~ 409 (864)
...+.+.+.........+....|.++++|+.|.+..+... .+|..+..++ +||.|++.++.++.++....+.
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~ 611 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPE 611 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCcc
Confidence 3455555544444445677788999999999999766421 4677777765 6999999999999986655789
Q ss_pred cccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeeccccccccccccCCcchhhhcCCCCc
Q 002939 410 ELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKWEISNCSLLEEIVGKEGGV 489 (864)
Q Consensus 410 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~~~~~~~ 489 (864)
+|++|+++++++..+|..+..+++|+.|++++|..+..+|. ++.+++|++|++++|.. +..+.
T Consensus 612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~---------L~~lp------ 674 (1153)
T PLN03210 612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSS---------LVELP------ 674 (1153)
T ss_pred CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCC---------ccccc------
Confidence 99999999999999999999999999999999887888875 78999999999877642 22221
Q ss_pred cCCCCccCcccceecccccccccccccccccccCCCcceEEEeeCCCcccccccccccccccccCcccccCCCccccccc
Q 002939 490 EADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFL 569 (864)
Q Consensus 490 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (864)
.....+++|+.|++++|+.+..++... .+++|+.|++++|..+..+|..
T Consensus 675 --~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~~-------------------------- 723 (1153)
T PLN03210 675 --SSIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLSGCSRLKSFPDI-------------------------- 723 (1153)
T ss_pred --hhhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCCCCCCccccccc--------------------------
Confidence 111245677777787777777666532 5677888888888766655431
Q ss_pred hhhhcCCcceeecccccccccccccccCcc-cccCccEEEeecCCc-------cccchhHHHHcccccEEEEEccccccc
Q 002939 570 VEKVLPNLEELRLSNKKDITKIWQGQFPDH-LLNKLKVLAIENDKS-------EVLAPDLLERFHNLVNLELADGSYKEL 641 (864)
Q Consensus 570 ~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~-~~~~L~~L~l~~~~~-------~~~~~~~~~~l~~L~~L~l~~~~l~~~ 641 (864)
.++|++|+++++. +. .+|.. .+++|++|.+.++.. ...++.....+++|+.|++++|..
T Consensus 724 ----~~nL~~L~L~~n~-i~-----~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~--- 790 (1153)
T PLN03210 724 ----STNISWLDLDETA-IE-----EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS--- 790 (1153)
T ss_pred ----cCCcCeeecCCCc-cc-----cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC---
Confidence 2345555555552 11 12221 144555555544221 111122222345666666664433
Q ss_pred cccccchhhhcccccccceeecCCCcCccccccccccccccccccCccEEEeecccccccccCCccccCCccEEEEecCc
Q 002939 642 FSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKNLLPSSASFRCLTKLSVWCCE 721 (864)
Q Consensus 642 ~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~ 721 (864)
...+|..++++++|+.|+|++|+.++.++.. ..+++|+.|++++|..+..++.. .++|+.|++++ +
T Consensus 791 ---l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~-------~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~-n 856 (1153)
T PLN03210 791 ---LVELPSSIQNLHKLEHLEIENCINLETLPTG-------INLESLESLDLSGCSRLRTFPDI---STNISDLNLSR-T 856 (1153)
T ss_pred ---ccccChhhhCCCCCCEEECCCCCCcCeeCCC-------CCccccCEEECCCCCcccccccc---ccccCEeECCC-C
Confidence 1344555566666666666666666554211 13556666666666665554322 34566666654 3
Q ss_pred CceeeechhhhhhhccccEEEecCccchHHhhhccccccCcceeeccccCeeecCcccccccc
Q 002939 722 QLINLVTSSAAKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRLQSLTTF 784 (864)
Q Consensus 722 ~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 784 (864)
+++.+ +..+..+++|+.|++++|++++.++... . .+++|+.|++++|++|+.+
T Consensus 857 ~i~~i--P~si~~l~~L~~L~L~~C~~L~~l~~~~-~-------~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 857 GIEEV--PWWIEKFSNLSFLDMNGCNNLQRVSLNI-S-------KLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCccC--hHHHhcCCCCCEEECCCCCCcCccCccc-c-------cccCCCeeecCCCcccccc
Confidence 45444 2345556666666666666666555221 1 2556666666666666544
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=7.1e-26 Score=244.64 Aligned_cols=433 Identities=21% Similarity=0.260 Sum_probs=234.8
Q ss_pred ceEEEeecCCccCCCCCC--cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEec
Q 002939 318 CSTISLHGNNISEIPQGW--ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLD 395 (864)
Q Consensus 318 l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~ 395 (864)
+.+|++..|.+-..|-.+ .+-+|+.|+++.+... ..|..+ ..+.+|+.|.++.|.|.++|.+..++.+|++|.|.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~--~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS--SFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc--cCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheec
Confidence 445555555444433111 3334555555543333 233332 34555566666666666666555566666666666
Q ss_pred Ccccccc-ccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeeccccccc----
Q 002939 396 GCKLEDI-RIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIK---- 470 (864)
Q Consensus 396 ~~~l~~l-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~---- 470 (864)
+|.++.+ .++..+++|++|++++|++..+|.-+..++.+..+..++|.++..++. .. .+++++..+.+.
T Consensus 100 ~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-----~~-ik~~~l~~n~l~~~~~ 173 (1081)
T KOG0618|consen 100 NNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ-----TS-IKKLDLRLNVLGGSFL 173 (1081)
T ss_pred cchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc-----cc-chhhhhhhhhcccchh
Confidence 5555554 345556666666666665555555555555555555555533333222 11 444444433322
Q ss_pred cccccCCcchhhhcCCCCccCCCCccCcccceecccccccccccccccccccCCCcceEEEeeCCCcccccccccccccc
Q 002939 471 WEISNCSLLEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHEN 550 (864)
Q Consensus 471 ~~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 550 (864)
.++.+++. .+++.++.+.......+++|+.+.... +.+..+ ....++++.|....|+.......
T Consensus 174 ~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~r-n~ls~l-----~~~g~~l~~L~a~~n~l~~~~~~-------- 237 (1081)
T KOG0618|consen 174 IDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCER-NQLSEL-----EISGPSLTALYADHNPLTTLDVH-------- 237 (1081)
T ss_pred cchhhhhe--eeecccchhhhhhhhhccchhhhhhhh-cccceE-----EecCcchheeeeccCcceeeccc--------
Confidence 12232322 344444443322222222222222111 011100 11123333333333322211000
Q ss_pred cccCcccccCCCccccccchhhhcCCcceeecccccccccccccccCccc--ccCccEEEeecCCccccchhHHHHcccc
Q 002939 551 NEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHL--LNKLKVLAIENDKSEVLAPDLLERFHNL 628 (864)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L 628 (864)
-...+|++++++.+. + ..+|.+. +.+|+.+.+..|.++..|.. +....+|
T Consensus 238 ---------------------p~p~nl~~~dis~n~-l-----~~lp~wi~~~~nle~l~~n~N~l~~lp~r-i~~~~~L 289 (1081)
T KOG0618|consen 238 ---------------------PVPLNLQYLDISHNN-L-----SNLPEWIGACANLEALNANHNRLVALPLR-ISRITSL 289 (1081)
T ss_pred ---------------------cccccceeeecchhh-h-----hcchHHHHhcccceEecccchhHHhhHHH-HhhhhhH
Confidence 002345555555552 1 1122222 44555555555555444433 3344455
Q ss_pred cEEEEEccccccccccccchhhhcccccccceeecCCCcCccccccccc--------------------cccccccccCc
Q 002939 629 VNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEE--------------------NSKLNMIFQNL 688 (864)
Q Consensus 629 ~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~--------------------~~~~~~~~~~L 688 (864)
+.|.+..|.+. .+|.....+.+|++|++.. +++.+++.... .......++.|
T Consensus 290 ~~l~~~~nel~-------yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~L 361 (1081)
T KOG0618|consen 290 VSLSAAYNELE-------YIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAAL 361 (1081)
T ss_pred HHHHhhhhhhh-------hCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHH
Confidence 55555555553 3455566788999999988 45554422100 01112245678
Q ss_pred cEEEeecccccc-cccCCccccCCccEEEEecCcCceeeechhhhhhhccccEEEecCccchHHhhhccccccCcceeec
Q 002939 689 ETLDISFCRNLK-NLLPSSASFRCLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFF 767 (864)
Q Consensus 689 ~~L~l~~c~~l~-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 767 (864)
+.|.+.+ +.++ ...+.+..+++|+.|++++ +.+..+ +.+.+.+++.|++|+++| ++++.+|.... .+
T Consensus 362 q~Lylan-N~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~f-pas~~~kle~LeeL~LSG-NkL~~Lp~tva--------~~ 429 (1081)
T KOG0618|consen 362 QELYLAN-NHLTDSCFPVLVNFKHLKVLHLSY-NRLNSF-PASKLRKLEELEELNLSG-NKLTTLPDTVA--------NL 429 (1081)
T ss_pred HHHHHhc-Ccccccchhhhccccceeeeeecc-cccccC-CHHHHhchHHhHHHhccc-chhhhhhHHHH--------hh
Confidence 8888888 5554 3455667899999999997 567765 567889999999999999 78888884332 37
Q ss_pred cccCeeecCccccccccccCCceeecCccceeecccCCCcccc--ccCcccCCccceEeeCCcc
Q 002939 768 PKLESLDLNRLQSLTTFCSANYTFKFPSLCYLSVSACPKMKIF--CRGVLSAPRLEKVRLNDQN 829 (864)
Q Consensus 768 ~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~l--p~~~~~~~~L~~l~l~~~~ 829 (864)
++|++|...+ +.|..+|. +..+++|+.++| +|.+++.. |+... -|+|++|+++|+-
T Consensus 430 ~~L~tL~ahs-N~l~~fPe---~~~l~qL~~lDl-S~N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 430 GRLHTLRAHS-NQLLSFPE---LAQLPQLKVLDL-SCNNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred hhhHHHhhcC-Cceeechh---hhhcCcceEEec-ccchhhhhhhhhhCC-CcccceeeccCCc
Confidence 8999999998 89999982 568999999999 67878764 44332 2899999999654
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=2.6e-26 Score=236.28 Aligned_cols=378 Identities=20% Similarity=0.274 Sum_probs=256.6
Q ss_pred hhccceEEEeecCCcc--CCCCCC-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCcc
Q 002939 314 LLKKCSTISLHGNNIS--EIPQGW-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLR 390 (864)
Q Consensus 314 ~~~~l~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~ 390 (864)
.++-+|-+++++|+++ .+|... .+.+++-|.+.. .....+|..+ +.+.+|++|.+.+|++.++-..+..++.||
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr--t~L~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR--TKLEQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLR 81 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEech--hhhhhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhH
Confidence 3455666677777666 566665 666677666653 2223566655 667777777777777777766677777777
Q ss_pred EEEecCccccc--c-ccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecccc
Q 002939 391 TLCLDGCKLED--I-RIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATC 467 (864)
Q Consensus 391 ~L~L~~~~l~~--l-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 467 (864)
.+.++.|++.. + +.+-.+..|..|||++|++++.|..+.+-+++-+|+|++|+ +..+|...+.+++-|-.|++++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc
Confidence 77777776553 3 45667777777777777777777777777777777777775 77777666667777777777777
Q ss_pred cc---ccccccCCcchhhhcCCCCccCCCCccCcc---cceeccccccc-ccccccccccccCCCcceEEEeeCCCcccc
Q 002939 468 CI---KWEISNCSLLEEIVGKEGGVEADPSFVFPR---LTILQLCYLPE-LRAFYPGIHTLECPMLTKLKVSCCDKLKCF 540 (864)
Q Consensus 468 ~~---~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~---L~~L~l~~~~~-l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 540 (864)
.+ ++-+..+..|++|.++.|.....-...+|+ |+.|.+++..+ +.+++.. ...+.+|..++++. +.+..+
T Consensus 161 rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts--ld~l~NL~dvDlS~-N~Lp~v 237 (1255)
T KOG0444|consen 161 RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS--LDDLHNLRDVDLSE-NNLPIV 237 (1255)
T ss_pred hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc--hhhhhhhhhccccc-cCCCcc
Confidence 53 345666666777777666555444444444 44444554332 3344443 33466777888774 556666
Q ss_pred cccccccccccccCcccccCCCccccccchhhhcCCcceeecccccccccccccccCcccccCccEEEeecCCccccchh
Q 002939 541 SSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAPD 620 (864)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~~ 620 (864)
|..++. +++|+.|++++|. ++..- .....-.+|++|+++.|+++.+|..
T Consensus 238 Pecly~---------------------------l~~LrrLNLS~N~-iteL~---~~~~~W~~lEtLNlSrNQLt~LP~a 286 (1255)
T KOG0444|consen 238 PECLYK---------------------------LRNLRRLNLSGNK-ITELN---MTEGEWENLETLNLSRNQLTVLPDA 286 (1255)
T ss_pred hHHHhh---------------------------hhhhheeccCcCc-eeeee---ccHHHHhhhhhhccccchhccchHH
Confidence 654443 7889999999994 33211 1112246899999999999988865
Q ss_pred HHHHcccccEEEEEccccccccccccchhhhcccccccceeecCCCcCccccccccccccccccccCccEEEeecccccc
Q 002939 621 LLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLK 700 (864)
Q Consensus 621 ~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 700 (864)
+..++.|+.|.+.+|.++ ...+|+.++.+.+|+.+..++ +.|+-+ +.....++.|+.|.+++ +.+.
T Consensus 287 -vcKL~kL~kLy~n~NkL~-----FeGiPSGIGKL~~Levf~aan-N~LElV------PEglcRC~kL~kL~L~~-NrLi 352 (1255)
T KOG0444|consen 287 -VCKLTKLTKLYANNNKLT-----FEGIPSGIGKLIQLEVFHAAN-NKLELV------PEGLCRCVKLQKLKLDH-NRLI 352 (1255)
T ss_pred -HhhhHHHHHHHhccCccc-----ccCCccchhhhhhhHHHHhhc-cccccC------chhhhhhHHHHHhcccc-ccee
Confidence 678999999999999886 577899999999999999988 667665 33455688899999887 7888
Q ss_pred cccCCccccCCccEEEEecCcCceeeechhhhhhhccccEEEecC
Q 002939 701 NLLPSSASFRCLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDG 745 (864)
Q Consensus 701 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 745 (864)
.+|..+.-++.|+.|++...+++...+.|+... .+|+.-+|..
T Consensus 353 TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~--~~lefYNIDF 395 (1255)
T KOG0444|consen 353 TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDAR--KKLEFYNIDF 395 (1255)
T ss_pred echhhhhhcCCcceeeccCCcCccCCCCcchhh--hcceeeecce
Confidence 888888888999999999888887765544332 4455544443
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=7.6e-26 Score=221.51 Aligned_cols=431 Identities=20% Similarity=0.239 Sum_probs=303.4
Q ss_pred ccceEEEeecCCccCCCCCC-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEe
Q 002939 316 KKCSTISLHGNNISEIPQGW-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCL 394 (864)
Q Consensus 316 ~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L 394 (864)
..+..+.+++|++..+.+.. .+..+.+|.++.++.. .+|..+ +.+..+..|+.++|.+..+|..++.+..|+.|+.
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~--~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS--QLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhh--hCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence 46777889999998777766 8889999999875443 577776 7788999999999999999999999999999999
Q ss_pred cCcccccc-ccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeeccccc---cc
Q 002939 395 DGCKLEDI-RIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCC---IK 470 (864)
Q Consensus 395 ~~~~l~~l-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~---~~ 470 (864)
++|.+..+ ++++.+..|..|+..+|++.++|.++..+.+|..|++.+|. ++.+|+..+. ++.|++|+...|. ++
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~~ld~~~N~L~tlP 199 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIA-MKRLKHLDCNSNLLETLP 199 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHH-HHHHHhcccchhhhhcCC
Confidence 99988887 77999999999999999999999999999999999999996 8999888665 9999999988875 45
Q ss_pred cccccCCcchhhhcCCCCccCCCCccCcccceecccccccccccccccccccCCCcceEEEeeCCCcccccccccccccc
Q 002939 471 WEISNCSLLEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHEN 550 (864)
Q Consensus 471 ~~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 550 (864)
..++.+.+|+-|++..|.+...|. +..|+.|+++.++. +.++.+|.+..
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lPe-------------------------f~gcs~L~Elh~g~-N~i~~lpae~~----- 248 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLPE-------------------------FPGCSLLKELHVGE-NQIEMLPAEHL----- 248 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCCC-------------------------CCccHHHHHHHhcc-cHHHhhHHHHh-----
Confidence 678888888888777775544331 22344445554433 23333333222
Q ss_pred cccCcccccCCCccccccchhhhcCCcceeecccccccccccccccCccc--ccCccEEEeecCCccccchhHHHHcccc
Q 002939 551 NEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHL--LNKLKVLAIENDKSEVLAPDLLERFHNL 628 (864)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L 628 (864)
+.++++..|++.+|+ +. ..|... +.+|.+|++++|.++..|.. ++++ .|
T Consensus 249 ---------------------~~L~~l~vLDLRdNk-lk-----e~Pde~clLrsL~rLDlSNN~is~Lp~s-Lgnl-hL 299 (565)
T KOG0472|consen 249 ---------------------KHLNSLLVLDLRDNK-LK-----EVPDEICLLRSLERLDLSNNDISSLPYS-LGNL-HL 299 (565)
T ss_pred ---------------------cccccceeeeccccc-cc-----cCchHHHHhhhhhhhcccCCccccCCcc-cccc-ee
Confidence 237889999999994 33 344443 78899999999999999986 6888 99
Q ss_pred cEEEEEccccccccc----c----------------------cc-----chhh----hcccccccceeecCCCcCccccc
Q 002939 629 VNLELADGSYKELFS----N----------------------EG-----QVEK----LVGKLARIKCLQLSGLNDLKHLW 673 (864)
Q Consensus 629 ~~L~l~~~~l~~~~~----~----------------------~~-----~l~~----~~~~l~~L~~L~l~~~~~l~~l~ 673 (864)
+.|-+.+|.+..+-. . ++ ..+. ......+.+.|++++ .+++.++
T Consensus 300 ~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VP 378 (565)
T KOG0472|consen 300 KFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVP 378 (565)
T ss_pred eehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCC
Confidence 999999998765410 0 00 0000 012234567777777 5555542
Q ss_pred cccccccccccccCccEEEeec-----------------------ccccccccCCccccCCccEEEEecCcCceeeechh
Q 002939 674 LWEENSKLNMIFQNLETLDISF-----------------------CRNLKNLLPSSASFRCLTKLSVWCCEQLINLVTSS 730 (864)
Q Consensus 674 ~~~~~~~~~~~~~~L~~L~l~~-----------------------c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 730 (864)
...... ..-.-...++++. .+.+..++.....+++|..|++++ +-+.++ |.
T Consensus 379 dEVfea---~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~L--P~ 452 (565)
T KOG0472|consen 379 DEVFEA---AKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDL--PE 452 (565)
T ss_pred HHHHHH---hhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhc--ch
Confidence 211000 0000122333333 123333333345677888888875 445555 34
Q ss_pred hhhhhccccEEEecCccchHHhhhccccccCcceeeccccCeeecCccccccccccCCceeecCccceeecccCCCcccc
Q 002939 731 AAKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFCSANYTFKFPSLCYLSVSACPKMKIF 810 (864)
Q Consensus 731 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~l 810 (864)
.+..+..|+.|+|+.+ .+..+|... - .+..|+.+-.++ +.+..++.. .+.++..|.+|++.+ ..+..+
T Consensus 453 e~~~lv~Lq~LnlS~N-rFr~lP~~~-y-------~lq~lEtllas~-nqi~~vd~~-~l~nm~nL~tLDL~n-Ndlq~I 520 (565)
T KOG0472|consen 453 EMGSLVRLQTLNLSFN-RFRMLPECL-Y-------ELQTLETLLASN-NQIGSVDPS-GLKNMRNLTTLDLQN-NDLQQI 520 (565)
T ss_pred hhhhhhhhheeccccc-ccccchHHH-h-------hHHHHHHHHhcc-ccccccChH-HhhhhhhcceeccCC-CchhhC
Confidence 5667777888888874 555555211 1 133455555555 788888764 467899999999966 568999
Q ss_pred ccCcccCCccceEeeCCccc
Q 002939 811 CRGVLSAPRLEKVRLNDQNY 830 (864)
Q Consensus 811 p~~~~~~~~L~~l~l~~~~~ 830 (864)
|.++.++.+|++|++.|+..
T Consensus 521 Pp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 521 PPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ChhhccccceeEEEecCCcc
Confidence 99999999999999997663
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=5.3e-24 Score=230.30 Aligned_cols=456 Identities=21% Similarity=0.208 Sum_probs=285.2
Q ss_pred cceEEEeecCCccCCCCCC-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEec
Q 002939 317 KCSTISLHGNNISEIPQGW-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLD 395 (864)
Q Consensus 317 ~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~ 395 (864)
++.+|++++|.+..+|..+ .+.+|+.|.++.+..+ .+|.++ .++++|++|.|.+|.+..+|.++..+++|++|+++
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~--~vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR--SVPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHh--hCchhh-hhhhcchhheeccchhhcCchhHHhhhcccccccc
Confidence 5899999999999999888 7889999999876555 466554 78999999999999999999999999999999999
Q ss_pred Ccccccc-ccccccCcccEEeCCCC-CCccCchhhccccccceecccccccccccChhhhhcCcccceeeccccccc-cc
Q 002939 396 GCKLEDI-RIIGELKELEILSLQGC-DIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIK-WE 472 (864)
Q Consensus 396 ~~~l~~l-~~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~-~~ 472 (864)
+|.+..+ ..+..+..+..+..++| .+..++... ++++++..+.....++. .+.+++. .|++..|.+. -.
T Consensus 123 ~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~n~l~~~~~~-~i~~l~~--~ldLr~N~~~~~d 194 (1081)
T KOG0618|consen 123 FNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS-----IKKLDLRLNVLGGSFLI-DIYNLTH--QLDLRYNEMEVLD 194 (1081)
T ss_pred hhccCCCchhHHhhhHHHHHhhhcchhhhhhcccc-----chhhhhhhhhcccchhc-chhhhhe--eeecccchhhhhh
Confidence 9998887 45788888999999988 444444322 66666666653333322 2444444 4777776655 35
Q ss_pred cccCCcchhhhcCCCCccCCCCccCcccceecccccccccccccccccccCCCcceEEEeeCCCcccccccccccccccc
Q 002939 473 ISNCSLLEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENNE 552 (864)
Q Consensus 473 ~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 552 (864)
+.++.+|+.+....++...... .-++++.|+...++-... .....-.+|++++++.+ .+..+|........+..
T Consensus 195 ls~~~~l~~l~c~rn~ls~l~~-~g~~l~~L~a~~n~l~~~----~~~p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~ 268 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQLSELEI-SGPSLTALYADHNPLTTL----DVHPVPLNLQYLDISHN-NLSNLPEWIGACANLEA 268 (1081)
T ss_pred hhhccchhhhhhhhcccceEEe-cCcchheeeeccCcceee----ccccccccceeeecchh-hhhcchHHHHhcccceE
Confidence 5666666666555554432111 124455555544332210 00111234555555542 23333321111000000
Q ss_pred cCcccccCCCccccccchhhhcCCcceeecccccccccccccccCc-ccccCccEEEeecCCccccchhHHHHccc-ccE
Q 002939 553 EGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPD-HLLNKLKVLAIENDKSEVLAPDLLERFHN-LVN 630 (864)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~ 630 (864)
...-.+ .............+|++|.+..|. ++. ..|. ..+..|++|++..|.+..+|+.++.-+.. |..
T Consensus 269 l~~n~N----~l~~lp~ri~~~~~L~~l~~~~ne-l~y----ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ 339 (1081)
T KOG0618|consen 269 LNANHN----RLVALPLRISRITSLVSLSAAYNE-LEY----IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNT 339 (1081)
T ss_pred ecccch----hHHhhHHHHhhhhhHHHHHhhhhh-hhh----CCCcccccceeeeeeehhccccccchHHHhhhhHHHHH
Confidence 000000 000000001114456666666663 221 1111 11678888888888888888877776665 788
Q ss_pred EEEEccccccccccccchhhhcccccccceeecCCCcCccccccccccccccccccCccEEEeecccccccccCC-cccc
Q 002939 631 LELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKNLLPS-SASF 709 (864)
Q Consensus 631 L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~ 709 (864)
|..++|.+...+..+ -..++.|+.|.+.+ +.|++ .......++++|+.|++++ +.|..+|.. ...+
T Consensus 340 ln~s~n~l~~lp~~~------e~~~~~Lq~Lylan-N~Ltd-----~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~kl 406 (1081)
T KOG0618|consen 340 LNVSSNKLSTLPSYE------ENNHAALQELYLAN-NHLTD-----SCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRKL 406 (1081)
T ss_pred Hhhhhcccccccccc------chhhHHHHHHHHhc-Ccccc-----cchhhhccccceeeeeecc-cccccCCHHHHhch
Confidence 888888876554322 23456788888888 55554 2445566788999999998 778777554 3678
Q ss_pred CCccEEEEecCcCceeeechhhhhhhccccEEEecCccchHHhhhccccccCcceeeccccCeeecCccccccccccCCc
Q 002939 710 RCLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFCSANY 789 (864)
Q Consensus 710 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~ 789 (864)
+.|++|++++ ++|+.++ ..+..++.|++|...+ +.+..+| +. ..++.|+.++++. ++|+.+.....
T Consensus 407 e~LeeL~LSG-NkL~~Lp--~tva~~~~L~tL~ahs-N~l~~fP-e~--------~~l~qL~~lDlS~-N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 407 EELEELNLSG-NKLTTLP--DTVANLGRLHTLRAHS-NQLLSFP-EL--------AQLPQLKVLDLSC-NNLSEVTLPEA 472 (1081)
T ss_pred HHhHHHhccc-chhhhhh--HHHHhhhhhHHHhhcC-Cceeech-hh--------hhcCcceEEeccc-chhhhhhhhhh
Confidence 8888899997 6888884 6677888898888877 5566666 22 2478899999986 88887654321
Q ss_pred eeecCccceeecccCCCccccccCcccCCccceEeeC
Q 002939 790 TFKFPSLCYLSVSACPKMKIFCRGVLSAPRLEKVRLN 826 (864)
Q Consensus 790 ~~~~~~L~~L~i~~C~~l~~lp~~~~~~~~L~~l~l~ 826 (864)
. ..|.||+|+++++..+..--..+..+.++...++.
T Consensus 473 ~-p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~ 508 (1081)
T KOG0618|consen 473 L-PSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDIT 508 (1081)
T ss_pred C-CCcccceeeccCCcccccchhhhHHhhhhhheecc
Confidence 1 23789999998888644332323333444444443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.64 E-value=9.1e-16 Score=173.05 Aligned_cols=93 Identities=22% Similarity=0.215 Sum_probs=53.1
Q ss_pred CceEEEEeccccccCCcccccCCCccEEEecCccccccccccccCcccEEeCCCCCCccCchhhccccccceeccccccc
Q 002939 365 KLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDIRIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFE 444 (864)
Q Consensus 365 ~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~ 444 (864)
.-..|+++++.++.+|..+. .+|+.|++.+|+++.++.. +++|++|++++|+++.+|.. .++|++|++++|.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~- 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP- 273 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCCc-
Confidence 34556666666666666553 3566666666666665432 45666666666666666532 3456666666664
Q ss_pred ccccChhhhhcCcccceeecccccc
Q 002939 445 LKVIAPNVLSNLSQLEELYMATCCI 469 (864)
Q Consensus 445 l~~~~~~~l~~l~~L~~L~l~~~~~ 469 (864)
+..+|. ...+|+.|++++|.+
T Consensus 274 L~~Lp~----lp~~L~~L~Ls~N~L 294 (788)
T PRK15387 274 LTHLPA----LPSGLCKLWIFGNQL 294 (788)
T ss_pred hhhhhh----chhhcCEEECcCCcc
Confidence 555543 124455666655543
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.63 E-value=1.8e-17 Score=163.09 Aligned_cols=302 Identities=22% Similarity=0.281 Sum_probs=193.4
Q ss_pred EEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC-CcccccCCCccEEEecC-cc
Q 002939 321 ISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDG-CK 398 (864)
Q Consensus 321 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~-~~ 398 (864)
.+-++-.++++|..+. +....++|..|.+. .+|+..|+.+++||.|||++|.|+.| |+.|..+..|-.|-+.+ |+
T Consensus 51 VdCr~~GL~eVP~~LP-~~tveirLdqN~I~--~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP-PETVEIRLDQNQIS--SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EEccCCCcccCcccCC-CcceEEEeccCCcc--cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 4445566777877764 24455677764444 68999999999999999999999988 88899999988888877 78
Q ss_pred cccc--ccccccCcccEEeCCCCCCccC-chhhccccccceecccccccccccChhhhhcCcccceeecccccccccccc
Q 002939 399 LEDI--RIIGELKELEILSLQGCDIEHL-PREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKWEISN 475 (864)
Q Consensus 399 l~~l--~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 475 (864)
|+.+ ..|++|..|+.|.+.-|++..+ ...+..+++|..|.+..|. +..++...+..+..++++++.-|.+.. ..+
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~ic-dCn 205 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFIC-DCN 205 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCcccc-ccc
Confidence 9998 4599999999999999988855 5668889999999999985 888887778888889988876554311 011
Q ss_pred CCcchhhhcCCCCccCCCCccCcccceecccccccccccccccccccCCCcceEEEeeCCCcccccccccccccccccCc
Q 002939 476 CSLLEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQ 555 (864)
Q Consensus 476 ~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 555 (864)
++.+..... .+ ......+.......+.+ .+........... +++ .++..... .
T Consensus 206 L~wla~~~a-~~---~ietsgarc~~p~rl~~-~Ri~q~~a~kf~c---~~e-----------sl~s~~~~-------~- 258 (498)
T KOG4237|consen 206 LPWLADDLA-MN---PIETSGARCVSPYRLYY-KRINQEDARKFLC---SLE-----------SLPSRLSS-------E- 258 (498)
T ss_pred cchhhhHHh-hc---hhhcccceecchHHHHH-HHhcccchhhhhh---hHH-----------hHHHhhcc-------c-
Confidence 111111000 00 00000011111111110 0011111100000 011 11000000 0
Q ss_pred ccccCCCccccccchhhhcCCcceeecccccccccccccccCcccccCccEEEeecCCccccchhHHHHcccccEEEEEc
Q 002939 556 LIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELAD 635 (864)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 635 (864)
+.+........++.+++|++|++++| .++.+-.+.|.. ...+++|.+..|.+..+...+|..+.+|+.|++.+
T Consensus 259 ----d~~d~~cP~~cf~~L~~L~~lnlsnN-~i~~i~~~aFe~--~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~ 331 (498)
T KOG4237|consen 259 ----DFPDSICPAKCFKKLPNLRKLNLSNN-KITRIEDGAFEG--AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYD 331 (498)
T ss_pred ----cCcCCcChHHHHhhcccceEeccCCC-ccchhhhhhhcc--hhhhhhhhcCcchHHHHHHHhhhccccceeeeecC
Confidence 00000011112445899999999999 455444444443 67899999999999999989999999999999999
Q ss_pred cccccccccccchhhhcccccccceeecCCCc
Q 002939 636 GSYKELFSNEGQVEKLVGKLARIKCLQLSGLN 667 (864)
Q Consensus 636 ~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 667 (864)
|+|+.+ .|..|..+.+|.+|++-.++
T Consensus 332 N~it~~------~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 332 NQITTV------APGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred CeeEEE------ecccccccceeeeeehccCc
Confidence 999654 35567788888898886643
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=3e-15 Score=168.96 Aligned_cols=253 Identities=19% Similarity=0.204 Sum_probs=140.7
Q ss_pred EEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEecCccc
Q 002939 320 TISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKL 399 (864)
Q Consensus 320 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l 399 (864)
.|+++.+.++.+|..+. ++|+.|++..|+.. .+|. .+++|++|++++|.++.+|.. .++|+.|++++|.+
T Consensus 205 ~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt--~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L 274 (788)
T PRK15387 205 VLNVGESGLTTLPDCLP-AHITTLVIPDNNLT--SLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL 274 (788)
T ss_pred EEEcCCCCCCcCCcchh-cCCCEEEccCCcCC--CCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCch
Confidence 45666666666666553 36666666654333 3442 246677777777777766642 35667777777766
Q ss_pred cccccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeeccccccccccccC-Cc
Q 002939 400 EDIRIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKWEISNC-SL 478 (864)
Q Consensus 400 ~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~ 478 (864)
+.++.+ +.+|+.|++++|+++.+|.. +++|++|++++|. +..+|.. ..+|+.|++++|.+.. +... .+
T Consensus 275 ~~Lp~l--p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l----p~~L~~L~Ls~N~L~~-LP~lp~~ 343 (788)
T PRK15387 275 THLPAL--PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYNNQLTS-LPTLPSG 343 (788)
T ss_pred hhhhhc--hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC----cccccccccccCcccc-ccccccc
Confidence 665432 24566777777777766642 3567777777764 6655431 2345666666665532 1111 24
Q ss_pred chhhhcCCCCccCCCCccCcccceecccccccccccccccccccCCCcceEEEeeCCCcccccccccccccccccCcccc
Q 002939 479 LEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLID 558 (864)
Q Consensus 479 L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~ 558 (864)
|+.|+++.|.+...+. ..++|+.|++++ +.+..++. ..++|+.|+++++. +..+|.
T Consensus 344 Lq~LdLS~N~Ls~LP~-lp~~L~~L~Ls~-N~L~~LP~-----l~~~L~~LdLs~N~-Lt~LP~---------------- 399 (788)
T PRK15387 344 LQELSVSDNQLASLPT-LPSELYKLWAYN-NRLTSLPA-----LPSGLKELIVSGNR-LTSLPV---------------- 399 (788)
T ss_pred cceEecCCCccCCCCC-CCcccceehhhc-cccccCcc-----cccccceEEecCCc-ccCCCC----------------
Confidence 5555555555544332 234555665554 23333322 12356666665542 222221
Q ss_pred cCCCccccccchhhhcCCcceeecccccccccccccccCcccccCccEEEeecCCccccchhHHHHcccccEEEEEcccc
Q 002939 559 VPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSY 638 (864)
Q Consensus 559 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 638 (864)
..++|+.|++++|. +. .+|. .+.+|+.|++++|.++.+|.. +..+++|+.|++++|.+
T Consensus 400 --------------l~s~L~~LdLS~N~-Ls-----sIP~-l~~~L~~L~Ls~NqLt~LP~s-l~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 400 --------------LPSELKELMVSGNR-LT-----SLPM-LPSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPL 457 (788)
T ss_pred --------------cccCCCEEEccCCc-CC-----CCCc-chhhhhhhhhccCcccccChH-HhhccCCCeEECCCCCC
Confidence 13456777777773 22 1232 234667777777777766544 56677777777777776
Q ss_pred c
Q 002939 639 K 639 (864)
Q Consensus 639 ~ 639 (864)
+
T Consensus 458 s 458 (788)
T PRK15387 458 S 458 (788)
T ss_pred C
Confidence 3
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.57 E-value=2.1e-14 Score=163.40 Aligned_cols=136 Identities=18% Similarity=0.274 Sum_probs=85.7
Q ss_pred cceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEecC
Q 002939 317 KCSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDG 396 (864)
Q Consensus 317 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~ 396 (864)
+...|.++++.++.+|..+. ++++.|++.+|... .+|..++ ++|++|++++|.++.+|..+. .+|+.|+|++
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip-~~L~~L~Ls~N~Lt--sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP-EQITTLILDNNELK--SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCcCCcccc-cCCcEEEecCCCCC--cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 45678888888887776542 46777777765443 4565543 467777777777777776543 3677777777
Q ss_pred cccccccc-ccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeeccccc
Q 002939 397 CKLEDIRI-IGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCC 468 (864)
Q Consensus 397 ~~l~~l~~-~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 468 (864)
|.++.++. + ..+|++|++++|+++.+|..+. ++|++|++++|. ++.+|.. + .++|+.|++++|.
T Consensus 251 N~L~~LP~~l--~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-l--p~sL~~L~Ls~N~ 315 (754)
T PRK15370 251 NRITELPERL--PSALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-L--PSGITHLNVQSNS 315 (754)
T ss_pred CccCcCChhH--hCCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-c--hhhHHHHHhcCCc
Confidence 77766632 2 2467777777777777666543 467777777774 6665543 1 1345555555544
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.53 E-value=4.2e-14 Score=161.00 Aligned_cols=225 Identities=19% Similarity=0.233 Sum_probs=103.4
Q ss_pred CCceEEEEeccccccCCcccccCCCccEEEecCccccccccccccCcccEEeCCCCCCccCchhhccccccceecccccc
Q 002939 364 PKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDIRIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCF 443 (864)
Q Consensus 364 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~ 443 (864)
+.|+.|+|++|.++.+|..+. .+|++|++++|.++.++. +-..+|+.|++++|++..+|..+. .+|+.|++++|.
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~-~l~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~ 273 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPA-TLPDTIQEMELSINRITELPERLP--SALQSLDLFHNK 273 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCCh-hhhccccEEECcCCccCcCChhHh--CCCCEEECcCCc
Confidence 345555555555555554332 355555555555554422 011245555555555555554432 345555555543
Q ss_pred cccccChhhhhcCcccceeeccccccccccc-cCCcchhhhcCCCCccCCCCccCcccceeccccccccccccccccccc
Q 002939 444 ELKVIAPNVLSNLSQLEELYMATCCIKWEIS-NCSLLEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGIHTLE 522 (864)
Q Consensus 444 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 522 (864)
+..+|.. + ..+|+.|++++|.+...-. -..+|+.|.++.|.+...+....++|+.|+++++. +..++.. -
T Consensus 274 -L~~LP~~-l--~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~-Lt~LP~~----l 344 (754)
T PRK15370 274 -ISCLPEN-L--PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA-LTSLPAS----L 344 (754)
T ss_pred -cCccccc-c--CCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCc-cccCChh----h
Confidence 4444432 1 1345555555554432100 01244555555554444333333445555444431 2222211 0
Q ss_pred CCCcceEEEeeCCCcccccccccccccccccCcccccCCCccccccchhhhcCCcceeecccccccccccccccCccccc
Q 002939 523 CPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHLLN 602 (864)
Q Consensus 523 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~~~ 602 (864)
.++|+.|++++|. +..+|.. ..++|+.|++++|. +. .+|.....
T Consensus 345 ~~sL~~L~Ls~N~-L~~LP~~-----------------------------lp~~L~~LdLs~N~-Lt-----~LP~~l~~ 388 (754)
T PRK15370 345 PPELQVLDVSKNQ-ITVLPET-----------------------------LPPTITTLDVSRNA-LT-----NLPENLPA 388 (754)
T ss_pred cCcccEEECCCCC-CCcCChh-----------------------------hcCCcCEEECCCCc-CC-----CCCHhHHH
Confidence 2355555555542 2222210 02456666666663 21 23333344
Q ss_pred CccEEEeecCCccccchh---HHHHcccccEEEEEcccc
Q 002939 603 KLKVLAIENDKSEVLAPD---LLERFHNLVNLELADGSY 638 (864)
Q Consensus 603 ~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~l 638 (864)
.|+.|++++|.+..+|.. ....++++..|++.+|.+
T Consensus 389 sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 389 ALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred HHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 566666666666655432 223346666777776666
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.48 E-value=5.9e-14 Score=162.34 Aligned_cols=135 Identities=33% Similarity=0.469 Sum_probs=102.9
Q ss_pred CccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccc--cccCCcc-cccCCCccEEEecCc-ccccc
Q 002939 327 NISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMR--LLSLPSS-IRLLTDLRTLCLDGC-KLEDI 402 (864)
Q Consensus 327 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~--i~~lp~~-~~~l~~L~~L~L~~~-~l~~l 402 (864)
...+.|........|.+.+..+... .++.. ..++.|++|-+.++. +..++.. |..++.|++|||++| .+..+
T Consensus 512 ~~~~~~~~~~~~~~rr~s~~~~~~~--~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L 587 (889)
T KOG4658|consen 512 GLSEIPQVKSWNSVRRMSLMNNKIE--HIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL 587 (889)
T ss_pred CccccccccchhheeEEEEeccchh--hccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC
Confidence 3445666666667777777764443 23332 246689999999986 5666544 788999999999988 67777
Q ss_pred -ccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeeccc
Q 002939 403 -RIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMAT 466 (864)
Q Consensus 403 -~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 466 (864)
..++.|.+||||+++++.+..+|..+.+|..|.+|++..+..+..+ ++....+++||+|.+..
T Consensus 588 P~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 588 PSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPR 651 (889)
T ss_pred ChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeec
Confidence 5689999999999999999999999999999999999988766665 55566689999998654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=1.7e-15 Score=131.69 Aligned_cols=151 Identities=25% Similarity=0.358 Sum_probs=125.6
Q ss_pred hhccceEEEeecCCccCCCCCC-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEE
Q 002939 314 LLKKCSTISLHGNNISEIPQGW-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTL 392 (864)
Q Consensus 314 ~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L 392 (864)
.++.+++|.++.|+++.+|+.+ .+.+|++|.+..+.. ..+|..+ +.++.||.|++.-|.+..+|..|+.++-|++|
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi--e~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI--EELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh--hhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhh
Confidence 4667888999999999998887 888999998886444 3677766 78999999999988888889999999999999
Q ss_pred EecCccccc--c-ccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecccccc
Q 002939 393 CLDGCKLED--I-RIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCI 469 (864)
Q Consensus 393 ~L~~~~l~~--l-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 469 (864)
||.+|++.. + ..|..+..|+.|+++.|.++-+|..++++++||.|.++.|. +-++|.. ++.++.|++|++.+|.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhccccee
Confidence 999887764 3 45777888889999999888888899999999999998886 6677655 88888899998888864
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=1.3e-14 Score=126.32 Aligned_cols=161 Identities=24% Similarity=0.337 Sum_probs=135.9
Q ss_pred ccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEecCcccccc-cccc
Q 002939 328 ISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDI-RIIG 406 (864)
Q Consensus 328 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l-~~~~ 406 (864)
+.+++..+.++++..|.++.+... .+|+++ ..+++|++|++++|+++++|.++..++.|+.|++.-|++..+ ..|+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~--~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLT--VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred HhhcccccchhhhhhhhcccCcee--ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 456777778888888888875544 577777 789999999999999999999999999999999999988776 6799
Q ss_pred ccCcccEEeCCCCCCc--cCchhhccccccceecccccccccccChhhhhcCcccceeecccccc---ccccccCCcchh
Q 002939 407 ELKELEILSLQGCDIE--HLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCI---KWEISNCSLLEE 481 (864)
Q Consensus 407 ~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~---~~~~~~~~~L~~ 481 (864)
.++.|+.||+.+|++. .+|..|..++.|+-|.+++|. ++.+|++ ++++++||.|.+..|.+ +.+++.++.|++
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll~lpkeig~lt~lre 177 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLLSLPKEIGDLTRLRE 177 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchhhCcHHHHHHHHHHH
Confidence 9999999999999876 789999999999999999996 8888877 89999999999988864 557888888888
Q ss_pred hhcCCCCccCCC
Q 002939 482 IVGKEGGVEADP 493 (864)
Q Consensus 482 L~~~~~~~~~~~ 493 (864)
|...+++.+..+
T Consensus 178 lhiqgnrl~vlp 189 (264)
T KOG0617|consen 178 LHIQGNRLTVLP 189 (264)
T ss_pred HhcccceeeecC
Confidence 888777655433
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.39 E-value=9.8e-15 Score=144.09 Aligned_cols=287 Identities=22% Similarity=0.269 Sum_probs=191.7
Q ss_pred hhhhhccceEEEeecCCccCCCCCC--cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEec-cccccCCcc-cccC
Q 002939 311 DKYLLKKCSTISLHGNNISEIPQGW--ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIR-MRLLSLPSS-IRLL 386 (864)
Q Consensus 311 ~~~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~i~~lp~~-~~~l 386 (864)
+...+.....+.|..|.++.+|+.. .+++||.|+++.|.+. .|.++.|.++++|..|-+.+ |.|+.+|.. |++|
T Consensus 62 P~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is--~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 62 PANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS--FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred cccCCCcceEEEeccCCcccCChhhccchhhhceecccccchh--hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 4456778899999999999999987 8999999999986655 57788899999999888777 899999864 8999
Q ss_pred CCccEEEecCcccccc--ccccccCcccEEeCCCCCCccCch-hhccccccceecccccccccccChhhhhcCcccceee
Q 002939 387 TDLRTLCLDGCKLEDI--RIIGELKELEILSLQGCDIEHLPR-EIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELY 463 (864)
Q Consensus 387 ~~L~~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 463 (864)
..||.|.+.-|.+..+ ..+..+++|..|.+..|.+..++. .+..+..++++++..|..+..- +++.|..-.
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC------nL~wla~~~ 213 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC------NLPWLADDL 213 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc------ccchhhhHH
Confidence 9999999999999887 679999999999999999998887 7889999999999887632211 111111100
Q ss_pred ccccccccccccCCcchhhhcCCCCccCCCCccCc-cccee--cccccccccccccccccccCCCcceEEEeeCCCcccc
Q 002939 464 MATCCIKWEISNCSLLEEIVGKEGGVEADPSFVFP-RLTIL--QLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCF 540 (864)
Q Consensus 464 l~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~-~L~~L--~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 540 (864)
. .+.+. ++.........+...++.......|. .++.+ .+..-.......+...+..+++|++++++++ +++.+
T Consensus 214 a-~~~ie--tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN-~i~~i 289 (498)
T KOG4237|consen 214 A-MNPIE--TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN-KITRI 289 (498)
T ss_pred h-hchhh--cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC-ccchh
Confidence 0 00000 11111111111111111111111110 11111 1111111222333333556788888888864 34333
Q ss_pred cccccccccccccCcccccCCCccccccchhhhcCCcceeecccccccccccccccCcccccCccEEEeecCCccccchh
Q 002939 541 SSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAPD 620 (864)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~~ 620 (864)
....+ .....+++|.+..| ++..+-.+.+.. +..|+.|++++|+++.+.+.
T Consensus 290 ~~~aF--------------------------e~~a~l~eL~L~~N-~l~~v~~~~f~~--ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 290 EDGAF--------------------------EGAAELQELYLTRN-KLEFVSSGMFQG--LSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred hhhhh--------------------------cchhhhhhhhcCcc-hHHHHHHHhhhc--cccceeeeecCCeeEEEecc
Confidence 22111 12678999999998 444433333332 77899999999999999999
Q ss_pred HHHHcccccEEEEEcccc
Q 002939 621 LLERFHNLVNLELADGSY 638 (864)
Q Consensus 621 ~~~~l~~L~~L~l~~~~l 638 (864)
.|..+.+|..|.+-.|.+
T Consensus 341 aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cccccceeeeeehccCcc
Confidence 999999999999997776
No 24
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.26 E-value=1.8e-10 Score=140.83 Aligned_cols=277 Identities=13% Similarity=0.176 Sum_probs=159.6
Q ss_pred HHHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC-CCChHHHHHHHHHHhCCccccchhh
Q 002939 4 LKNVQNALLD-PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE-TPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 4 ~~~i~~~l~~-~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
..+|.+.|.+ ...+++.|+|++|.||||++.++.+. ++.++|+++.. ..++..+...++..++.........
T Consensus 19 R~rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~ 92 (903)
T PRK04841 19 RERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSK 92 (903)
T ss_pred chHHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccch
Confidence 4567777765 45789999999999999999998853 22589999974 4567777788888775322210000
Q ss_pred hhccccccCCCChhhHHHHHHHHHhc-CCeEEEEEcCCCchhc--cc-cccCCCCCCCCCcEEEEEeCChHHHh--hc--
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQK-ENKILVILDNIWEDLD--LE-KVGVPSGNDWRGCKVLLTARDRHVLG--SI-- 153 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LlvlDdv~~~~~--~~-~l~~~~~~~~~gs~IivTtR~~~v~~--~~-- 153 (864)
...-....+..+.......+...+.. +.+++||+||+...++ .. .+...+.....+.++|||||...-.. ..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~ 172 (903)
T PRK04841 93 SEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRV 172 (903)
T ss_pred hhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHh
Confidence 00000000112333445555555554 6889999999965421 12 22222222234568889999842211 11
Q ss_pred CCceEEcC----CCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHHHHHhccCCC-hh--HH-------
Q 002939 154 GSKTFQID----VLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTLAKALRNKSC-VS--AW------- 219 (864)
Q Consensus 154 ~~~~~~l~----~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~~~~l~~~~~-~~--~w------- 219 (864)
.....++. +|+.+|+.++|....+... ......++.+.++|.|+++..++..+..... .. .|
T Consensus 173 ~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 248 (903)
T PRK04841 173 RDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARRLAGINA 248 (903)
T ss_pred cCcceecCHHhCCCCHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHhhcCCCc
Confidence 13345555 9999999999988765422 2345668999999999999988877654321 10 00
Q ss_pred ---HH-HHHHhcCCCCCCchHHHH--HhhhccchHHHH-----HHHHHhHHHHHHHhccccc-cc-CCceEEecHHHHHH
Q 002939 220 ---KD-ALRQLKRPSPGNFDGVLA--KTLEGIDTVEEA-----RDKVCTSVQELKDACLLLD-GE-NSDWFSMHDVVRDV 286 (864)
Q Consensus 220 ---~~-~l~~l~~~~~~~~~~~l~--~~~~~~~~~~~~-----~~~~~~~~~~L~~~~l~~~-~~-~~~~~~mh~li~~~ 286 (864)
.. +.+..-...+......+. ..++... .+-. .+...+.+++|.+.+++.. .+ ...+|++|++++++
T Consensus 249 ~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~~~-~~l~~~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~ 327 (903)
T PRK04841 249 SHLSDYLVEEVLDNVDLETRHFLLRCSVLRSMN-DALIVRVTGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASF 327 (903)
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcccccCC-HHHHHHHcCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHH
Confidence 00 011100011111111111 1111111 1111 1122457889999998753 22 34589999999999
Q ss_pred HHHHh
Q 002939 287 AISIA 291 (864)
Q Consensus 287 ~~~~~ 291 (864)
.+...
T Consensus 328 l~~~l 332 (903)
T PRK04841 328 LRHRC 332 (903)
T ss_pred HHHHH
Confidence 98875
No 25
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.24 E-value=2.2e-10 Score=125.70 Aligned_cols=284 Identities=18% Similarity=0.199 Sum_probs=175.9
Q ss_pred HHHHHHHhcCC-CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC-CChHHHHHHHHHHhCCccccchhh
Q 002939 4 LKNVQNALLDP-DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET-PDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 4 ~~~i~~~l~~~-~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
..++++.|.+. +.|.+.|..|+|.||||++.+.+..... -..+.|+++.+. .++..+..-++..++.-.+.....
T Consensus 24 R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~ 100 (894)
T COG2909 24 RPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDE 100 (894)
T ss_pred cHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHH
Confidence 46778888764 7899999999999999999999983332 245899999865 568888888888887544322111
Q ss_pred hhccccccCCCChhhHHHHHHHHHhc-CCeEEEEEcCCCchhc---cccccCCCCCCCCCcEEEEEeCChHHHhh--cC-
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQK-ENKILVILDNIWEDLD---LEKVGVPSGNDWRGCKVLLTARDRHVLGS--IG- 154 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LlvlDdv~~~~~---~~~l~~~~~~~~~gs~IivTtR~~~v~~~--~~- 154 (864)
-..-.......+...+...+...+.. .++..+|+||-.-..+ -+.+...+.....+-..|||||++.-... +.
T Consensus 101 a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRl 180 (894)
T COG2909 101 AQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRL 180 (894)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceee
Confidence 11111111234455666667666653 4678999999643321 22222333344557899999998854332 11
Q ss_pred -CceEEcC----CCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHHHHHhccCCChhH-----------
Q 002939 155 -SKTFQID----VLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTLAKALRNKSCVSA----------- 218 (864)
Q Consensus 155 -~~~~~l~----~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~~~~l~~~~~~~~----------- 218 (864)
....++. .|+.+|+.++|....+..-+ +.-.+.+.+...|-+-|+..++-.++.+.+.+.
T Consensus 181 r~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~ 256 (894)
T COG2909 181 RDELLEIGSEELRFDTEEAAAFLNDRGSLPLD----AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASH 256 (894)
T ss_pred hhhHHhcChHhhcCChHHHHHHHHHcCCCCCC----hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHH
Confidence 3333443 68999999999997644333 334568999999999999999988884433221
Q ss_pred -HHHHHHHhcCCCCCCchHHHH--Hhhhccc---hHH-HHHHHHHhHHHHHHHhcccc--cccCCceEEecHHHHHHHHH
Q 002939 219 -WKDALRQLKRPSPGNFDGVLA--KTLEGID---TVE-EARDKVCTSVQELKDACLLL--DGENSDWFSMHDVVRDVAIS 289 (864)
Q Consensus 219 -w~~~l~~l~~~~~~~~~~~l~--~~~~~~~---~~~-~~~~~~~~~~~~L~~~~l~~--~~~~~~~~~mh~li~~~~~~ 289 (864)
|.-..++.-...+.+....++ +.+.... ... .-.+.+...+++|.++++|. -++...+|+.|.++.+|.+.
T Consensus 257 l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~ 336 (894)
T COG2909 257 LSDYLVEEVLDRLPPELRDFLLQTSVLSRFNDELCNALTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQ 336 (894)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHh
Confidence 111111111111222222111 1111100 000 00223345689999999886 45677899999999999988
Q ss_pred Hhccc
Q 002939 290 IASRD 294 (864)
Q Consensus 290 ~~~~e 294 (864)
....+
T Consensus 337 r~~~~ 341 (894)
T COG2909 337 RLQRE 341 (894)
T ss_pred hhccc
Confidence 76653
No 26
>PF05729 NACHT: NACHT domain
Probab=99.23 E-value=1e-10 Score=110.98 Aligned_cols=142 Identities=22% Similarity=0.305 Sum_probs=92.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccC----CCeEEEEEccCCCChH---HHHHHHHHHhCCccccchhhhhcccccc
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDML----FDEVVFAEVSETPDIG---KIQGELADQLGMKFSQGEIADQRGMKFS 89 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~~v~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 89 (864)
|++.|+|.+|+||||++++++.+...... +..++|+..+...... .+...+..+......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------------- 67 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA------------- 67 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh-------------
Confidence 68999999999999999999999876543 3456777776544322 343344433321111
Q ss_pred CCCChhhHHHHHHHHHhcCCeEEEEEcCCCchhc---------cccccCCC-CC-CCCCcEEEEEeCChHHHh---hcC-
Q 002939 90 QESDVPGRARKLYARLQKENKILVILDNIWEDLD---------LEKVGVPS-GN-DWRGCKVLLTARDRHVLG---SIG- 154 (864)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~---------~~~l~~~~-~~-~~~gs~IivTtR~~~v~~---~~~- 154 (864)
.........+.+.+++++|+|++|+..+ +..+...+ .. ...+.+|+||+|...... ...
T Consensus 68 ------~~~~~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~ 141 (166)
T PF05729_consen 68 ------PIEELLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQ 141 (166)
T ss_pred ------hhHHHHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCC
Confidence 1111233334457999999999976643 11122111 11 245789999999876632 233
Q ss_pred CceEEcCCCCHHHHHHHHHHhhC
Q 002939 155 SKTFQIDVLNEEEAWTLFKKMTG 177 (864)
Q Consensus 155 ~~~~~l~~L~~~e~~~l~~~~~~ 177 (864)
...+++++|++++..+++++.+.
T Consensus 142 ~~~~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 142 AQILELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred CcEEEECCCCHHHHHHHHHHHhh
Confidence 55799999999999999988763
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.22 E-value=1.8e-09 Score=111.25 Aligned_cols=179 Identities=16% Similarity=0.190 Sum_probs=112.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCC
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESD 93 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 93 (864)
.+.+++.|+|++|+||||+++.+++..... .. .++|+. ....+..+++..++..++.+.. ...
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~--------------~~~ 103 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKLV-NTRVDAEDLLRMVAADFGLETE--------------GRD 103 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeeee-CCCCCHHHHHHHHHHHcCCCCC--------------CCC
Confidence 445689999999999999999999886532 11 123432 3345677888889888876432 111
Q ss_pred hhhHHHHH----HHHHhcCCeEEEEEcCCCchh--ccccccC---CCCCCCCCcEEEEEeCChHHHhh--------cC--
Q 002939 94 VPGRARKL----YARLQKENKILVILDNIWEDL--DLEKVGV---PSGNDWRGCKVLLTARDRHVLGS--------IG-- 154 (864)
Q Consensus 94 ~~~~~~~~----~~~l~~~~~~LlvlDdv~~~~--~~~~l~~---~~~~~~~gs~IivTtR~~~v~~~--------~~-- 154 (864)
.......+ ......+++.++|+||++... .++.+.. .-........|++|.... .... ..
T Consensus 104 ~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r 182 (269)
T TIGR03015 104 KAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQR 182 (269)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhh
Confidence 22222233 333345788999999998653 3443321 111112223455665432 2111 11
Q ss_pred -CceEEcCCCCHHHHHHHHHHhhCCCC---CCCcchHHHHHHHHhcCCcchHHHHHHHHh
Q 002939 155 -SKTFQIDVLNEEEAWTLFKKMTGDCA---EKGELNFVAIDITKECGGLPIAIVTLAKAL 210 (864)
Q Consensus 155 -~~~~~l~~L~~~e~~~l~~~~~~~~~---~~~~~~~~~~~i~~~~~g~Pla~~~~~~~l 210 (864)
...+++++++.+|..+++...+.... ...-.++....|++.++|.|..+..++..+
T Consensus 183 ~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 183 IIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred eeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 34678999999999999998772211 122335778899999999999998888665
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.16 E-value=9.9e-12 Score=132.14 Aligned_cols=112 Identities=21% Similarity=0.198 Sum_probs=67.6
Q ss_pred hhhcCCCCceEEEEeccccc-----cCCcccccCCCccEEEecCccccc-------c-ccccccCcccEEeCCCCCCc-c
Q 002939 358 NIFMGMPKLKVLLFIRMRLL-----SLPSSIRLLTDLRTLCLDGCKLED-------I-RIIGELKELEILSLQGCDIE-H 423 (864)
Q Consensus 358 ~~~~~l~~Lr~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~l~~-------l-~~~~~l~~L~~L~l~~~~i~-~ 423 (864)
..|..+..|++|+++++.+. .++..+...++|+.|+++++.+.. + ..+..+++|++|++++|.+. .
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 34456666777777777763 345556666677777777765552 1 34556677777777777665 3
Q ss_pred Cchhhccccc---cceecccccccccccC----hhhhhcC-cccceeeccccccc
Q 002939 424 LPREIGQLTQ---LKLLDLSYCFELKVIA----PNVLSNL-SQLEELYMATCCIK 470 (864)
Q Consensus 424 lp~~~~~l~~---L~~L~l~~~~~l~~~~----~~~l~~l-~~L~~L~l~~~~~~ 470 (864)
.+..+..+.+ |++|++++|. +.... ...+..+ ++|++|++++|.+.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 4444444444 7777777775 43111 1224445 67777777777654
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.13 E-value=1.5e-11 Score=130.82 Aligned_cols=102 Identities=24% Similarity=0.182 Sum_probs=72.7
Q ss_pred EEEEeccccc--cCCcccccCCCccEEEecCccccc-----c-ccccccCcccEEeCCCCCCcc-------Cchhhcccc
Q 002939 368 VLLFIRMRLL--SLPSSIRLLTDLRTLCLDGCKLED-----I-RIIGELKELEILSLQGCDIEH-------LPREIGQLT 432 (864)
Q Consensus 368 ~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~l~~-----l-~~~~~l~~L~~L~l~~~~i~~-------lp~~~~~l~ 432 (864)
.|+|.++.++ ..+..+..+.+|+.|++++|.++. + ..+...+.|++|+++++.+.. ++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3566666654 335556777889999999998854 2 346677889999999986652 345567788
Q ss_pred ccceecccccccccccChhhhhcCcc---cceeeccccccc
Q 002939 433 QLKLLDLSYCFELKVIAPNVLSNLSQ---LEELYMATCCIK 470 (864)
Q Consensus 433 ~L~~L~l~~~~~l~~~~~~~l~~l~~---L~~L~l~~~~~~ 470 (864)
+|+.|++++|. +....+..+..+.+ |++|++++|.+.
T Consensus 82 ~L~~L~l~~~~-~~~~~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 82 GLQELDLSDNA-LGPDGCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred ceeEEEccCCC-CChhHHHHHHHHhccCcccEEEeeCCccc
Confidence 99999999997 54333334555555 999999888754
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.12 E-value=2.4e-12 Score=128.68 Aligned_cols=288 Identities=16% Similarity=0.161 Sum_probs=183.0
Q ss_pred cCcccceecccccccccccccccccccCCCcceEEEeeCCCcccccccccccccccccCcccccCCCccccccchhhhcC
Q 002939 496 VFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLP 575 (864)
Q Consensus 496 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 575 (864)
..|+++.|.+.+|.+++..........|++|+++.+..|..+++.... .....|+
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk-------------------------~la~gC~ 216 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK-------------------------YLAEGCR 216 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH-------------------------HHHHhhh
Confidence 346677777777776665555445566888888888888877765332 1123489
Q ss_pred CcceeecccccccccccccccCc-ccccCccEEEeecCCccccch--hHHHHcccccEEEEE-ccccccccccccchhhh
Q 002939 576 NLEELRLSNKKDITKIWQGQFPD-HLLNKLKVLAIENDKSEVLAP--DLLERFHNLVNLELA-DGSYKELFSNEGQVEKL 651 (864)
Q Consensus 576 ~L~~L~l~~~~~~~~~~~~~~p~-~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~-~~~l~~~~~~~~~l~~~ 651 (864)
+|++|++++|+.+.. .+..+. .....++.+...+|.-.+.-. ..-..++-+..+++. |+.+++. .+-..
T Consensus 217 kL~~lNlSwc~qi~~--~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~-----~~~~i 289 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISG--NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE-----DLWLI 289 (483)
T ss_pred hHHHhhhccCchhhc--CcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch-----HHHHH
Confidence 999999999987654 111111 013446666666654332211 111245566677766 6666532 22223
Q ss_pred cccccccceeecCCCcCccccccccccccccccccCccEEEeeccccccccc--CCccccCCccEEEEecCcCceeeech
Q 002939 652 VGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKNLL--PSSASFRCLTKLSVWCCEQLINLVTS 729 (864)
Q Consensus 652 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~~L~~L~l~~c~~l~~~~~~ 729 (864)
-..+..|+.|..++|..+.....|.- ....++|+.|.++.|..++..- .-..+.+.|+.+++..|...++..-.
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~~l~aL----g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~ 365 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDEVLWAL----GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA 365 (483)
T ss_pred hhhhhHhhhhcccCCCCCchHHHHHH----hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh
Confidence 34578889999999988776644432 2456899999999998776542 22357788999999988766554223
Q ss_pred hhhhhhccccEEEecCccchHHhhhccccccCcceeeccccCeeecCccccccccccCCceeecCccceeecccCCCccc
Q 002939 730 SAAKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFCSANYTFKFPSLCYLSVSACPKMKI 809 (864)
Q Consensus 730 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~ 809 (864)
+...+++.|+.|.+++|..+++.....+. ...-....|..+.+.+||.+++-.. +....++.||.+++.+|..+++
T Consensus 366 sls~~C~~lr~lslshce~itD~gi~~l~---~~~c~~~~l~~lEL~n~p~i~d~~L-e~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 366 SLSRNCPRLRVLSLSHCELITDEGIRHLS---SSSCSLEGLEVLELDNCPLITDATL-EHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred hhccCCchhccCChhhhhhhhhhhhhhhh---hccccccccceeeecCCCCchHHHH-HHHhhCcccceeeeechhhhhh
Confidence 44457888999999999887776221111 0111366888899999998887654 3566788999999999988876
Q ss_pred cccC--cccCCccceE
Q 002939 810 FCRG--VLSAPRLEKV 823 (864)
Q Consensus 810 lp~~--~~~~~~L~~l 823 (864)
-|-. -.++|+++..
T Consensus 442 ~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 442 EAISRFATHLPNIKVH 457 (483)
T ss_pred hhhHHHHhhCccceeh
Confidence 5422 2234555444
No 31
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.09 E-value=5.4e-12 Score=126.20 Aligned_cols=313 Identities=19% Similarity=0.168 Sum_probs=203.7
Q ss_pred ccceecccccccccccccccccccCCCcceEEEeeCCCcccccccccccccccccCcccccCCCccccccchhhhcCCcc
Q 002939 499 RLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLE 578 (864)
Q Consensus 499 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 578 (864)
.|+.|.+.+|.....-+.......+|++++|.+.+|.++++... ......|++|+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~-------------------------~sla~~C~~l~ 193 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSL-------------------------LSLARYCRKLR 193 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHH-------------------------HHHHHhcchhh
Confidence 56777888887766666666677889999999999987765422 22334588999
Q ss_pred eeecccccccccccccccCcccccCccEEEeecCCc-cc-cchhHHHHcccccEEEEEccccccccccccchhhhccccc
Q 002939 579 ELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKS-EV-LAPDLLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLA 656 (864)
Q Consensus 579 ~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~-~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~ 656 (864)
.|++..|..+++..-..+. ..+++|++|+++.|.. .. .......++..++.+..+++.-.+ ...+...-..++
T Consensus 194 ~l~L~~c~~iT~~~Lk~la-~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~----le~l~~~~~~~~ 268 (483)
T KOG4341|consen 194 HLNLHSCSSITDVSLKYLA-EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE----LEALLKAAAYCL 268 (483)
T ss_pred hhhhcccchhHHHHHHHHH-HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc----HHHHHHHhccCh
Confidence 9999888766543222111 1267888888866533 22 112223456666666665322110 122222334456
Q ss_pred ccceeecCCCcCccccccccccccccccccCccEEEeecccccccccCC--ccccCCccEEEEecCcCceeeechhhhhh
Q 002939 657 RIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKNLLPS--SASFRCLTKLSVWCCEQLINLVTSSAAKN 734 (864)
Q Consensus 657 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 734 (864)
-+.++++..|..++....| .....+..|+.|+.++|..+.+.+-. ..+.++|+.|.++.|..+.+..-...-.+
T Consensus 269 ~i~~lnl~~c~~lTD~~~~----~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn 344 (483)
T KOG4341|consen 269 EILKLNLQHCNQLTDEDLW----LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRN 344 (483)
T ss_pred HhhccchhhhccccchHHH----HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcC
Confidence 6777777788777765222 22345778999999999887654322 25779999999999998877744444457
Q ss_pred hccccEEEecCccchHHhhhccccccCcceeeccccCeeecCcccccccccc---CCceeecCccceeecccCCCccccc
Q 002939 735 LVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFCS---ANYTFKFPSLCYLSVSACPKMKIFC 811 (864)
Q Consensus 735 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~---~~~~~~~~~L~~L~i~~C~~l~~lp 811 (864)
++.|+.+++.+|-...+....... ..+|.|++|.+++|..+++... +....+...|+.+.+.+||.++.--
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls------~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~ 418 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLS------RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT 418 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhc------cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH
Confidence 889999999998876665322222 2589999999999999988621 1123456789999999999986532
Q ss_pred -cCcccCCccceEeeCCcccccccHHHHHHHHHhh-ccceee
Q 002939 812 -RGVLSAPRLEKVRLNDQNYWDADLNTIIQQSYYE-TNALNF 851 (864)
Q Consensus 812 -~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~~-~~~~~~ 851 (864)
+.+...++|+.+++.+.-.......+.+++..+. ++.-+|
T Consensus 419 Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 419 LEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred HHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 3345678999999986655444334455555554 344454
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=4.1e-11 Score=114.28 Aligned_cols=126 Identities=21% Similarity=0.249 Sum_probs=111.1
Q ss_pred CCCceEEEEeccccccCCcccccCCCccEEEecCccccccccccccCcccEEeCCCCCCccCchhhccccccceeccccc
Q 002939 363 MPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDIRIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYC 442 (864)
Q Consensus 363 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~ 442 (864)
-+.|..|||++|.|+.+.+++.-.+.+|+|++++|.++.+.++..+++|+.||+++|.++++-.+-.++-|.++|.+++|
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 46789999999999999999999999999999999999998899999999999999999888777778999999999999
Q ss_pred ccccccChhhhhcCcccceeecccccccc-----ccccCCcchhhhcCCCCccC
Q 002939 443 FELKVIAPNVLSNLSQLEELYMATCCIKW-----EISNCSLLEEIVGKEGGVEA 491 (864)
Q Consensus 443 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~L~~L~~~~~~~~~ 491 (864)
. +..+.. ++++-+|..|++++|.+.. .+++++.|+.+.+.+|.+..
T Consensus 363 ~-iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 363 K-IETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred h-Hhhhhh--hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 6 777733 8899999999999998753 68888888888877775544
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=8.8e-11 Score=108.47 Aligned_cols=107 Identities=21% Similarity=0.233 Sum_probs=31.1
Q ss_pred CCCCceEEEEeccccccCCcccc-cCCCccEEEecCccccccccccccCcccEEeCCCCCCccCchhh-ccccccceecc
Q 002939 362 GMPKLKVLLFIRMRLLSLPSSIR-LLTDLRTLCLDGCKLEDIRIIGELKELEILSLQGCDIEHLPREI-GQLTQLKLLDL 439 (864)
Q Consensus 362 ~l~~Lr~L~L~~~~i~~lp~~~~-~l~~L~~L~L~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l 439 (864)
+..++|.|+|+++.|+.+. .++ .+.+|+.|++++|.|+.++.+..+++|++|++++|+|+.++..+ ..+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 3445666666666666553 233 45666666666666666666666666666666666666665444 24666666666
Q ss_pred cccccccccCh-hhhhcCcccceeeccccccc
Q 002939 440 SYCFELKVIAP-NVLSNLSQLEELYMATCCIK 470 (864)
Q Consensus 440 ~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~ 470 (864)
++|. +..+.. ..++.+++|+.|++.+|++.
T Consensus 96 ~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 96 SNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cCCc-CCChHHhHHHHcCCCcceeeccCCccc
Confidence 6664 433221 22555666666666666653
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=1.4e-10 Score=107.18 Aligned_cols=98 Identities=30% Similarity=0.394 Sum_probs=31.2
Q ss_pred EeccccccCCcccccCCCccEEEecCcccccccccc-ccCcccEEeCCCCCCccCchhhccccccceecccccccccccC
Q 002939 371 FIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDIRIIG-ELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIA 449 (864)
Q Consensus 371 L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l~~~~-~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~ 449 (864)
|..+.|...|. +.+..+++.|+|.+|.|+.++.++ .+.+|+.|++++|.|+.++ .+..+++|++|++++|. ++.+.
T Consensus 4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~ 80 (175)
T PF14580_consen 4 LTANMIEQIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSIS 80 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-C
T ss_pred ccccccccccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccc
Confidence 33444555554 567778999999999999998887 6899999999999999886 67889999999999997 88886
Q ss_pred hhhhhcCcccceeecccccccc
Q 002939 450 PNVLSNLSQLEELYMATCCIKW 471 (864)
Q Consensus 450 ~~~l~~l~~L~~L~l~~~~~~~ 471 (864)
+.....+++|++|++++|.+..
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~ 102 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISD 102 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---S
T ss_pred cchHHhCCcCCEEECcCCcCCC
Confidence 5433579999999999998753
No 35
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.96 E-value=8.2e-10 Score=111.52 Aligned_cols=197 Identities=18% Similarity=0.262 Sum_probs=102.9
Q ss_pred chHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHH----------HHHh
Q 002939 2 STLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGEL----------ADQL 71 (864)
Q Consensus 2 ~~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i----------~~~l 71 (864)
.++++|.+++.++..+.+.|+|+.|+|||+|++++.+...... + .++|+......... ....+ .+.+
T Consensus 6 ~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~ 82 (234)
T PF01637_consen 6 KELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNES-SLRSFIEETSLADELSEAL 82 (234)
T ss_dssp HHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHHH-HHHHHHHHHHHHCHCHHHH
T ss_pred HHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhhh-HHHHHHHHHHHHHHHHHHH
Confidence 4678888888877778999999999999999999999875431 1 35555554443222 22222 1111
Q ss_pred CCccccchhhhhccccccCCCChhhHHHHHHHHHhc-CCeEEEEEcCCCchh-ccc---c----c---cCCCCCCCCCcE
Q 002939 72 GMKFSQGEIADQRGMKFSQESDVPGRARKLYARLQK-ENKILVILDNIWEDL-DLE---K----V---GVPSGNDWRGCK 139 (864)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LlvlDdv~~~~-~~~---~----l---~~~~~~~~~gs~ 139 (864)
.......... ................+.+.+.+ +++++||+||++... ..+ . + ....... ....
T Consensus 83 ~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 158 (234)
T PF01637_consen 83 GISIPSITLE---KISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQ-QNVS 158 (234)
T ss_dssp HHHCCTSTTE---EEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTEE
T ss_pred hhhcccccch---hhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcccc-CCce
Confidence 1110000000 00001112234445566666654 456999999997665 111 1 1 1111112 2334
Q ss_pred EEEEeCChHHHhh--------cC-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHH
Q 002939 140 VLLTARDRHVLGS--------IG-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVT 205 (864)
Q Consensus 140 IivTtR~~~v~~~--------~~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~ 205 (864)
+|++..+...... .+ ...+.+++|+.+++++++...+.....-+.-++..++|+..++|+|..+..
T Consensus 159 ~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 159 IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 5555555544432 22 445999999999999999997743311122355668999999999988754
No 36
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.92 E-value=5.7e-08 Score=106.17 Aligned_cols=194 Identities=20% Similarity=0.122 Sum_probs=120.1
Q ss_pred chHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCcccc
Q 002939 2 STLKNVQNALL----DPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQ 77 (864)
Q Consensus 2 ~~~~~i~~~l~----~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~ 77 (864)
+++++|..++. +...+.+.|+|++|+|||++++.++++.......-.++|+++....+...++..+..++......
T Consensus 37 ~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~ 116 (394)
T PRK00411 37 EQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPP 116 (394)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCC
Confidence 35667766663 34556789999999999999999999876553234578888888888889999999998642110
Q ss_pred chhhhhccccccCCCChhhHHHHHHHHHhc-CCeEEEEEcCCCchh------ccccccCCCCCCCCCc--EEEEEeCChH
Q 002939 78 GEIADQRGMKFSQESDVPGRARKLYARLQK-ENKILVILDNIWEDL------DLEKVGVPSGNDWRGC--KVLLTARDRH 148 (864)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LlvlDdv~~~~------~~~~l~~~~~~~~~gs--~IivTtR~~~ 148 (864)
....+..+..+.+.+.+.. ++..+||+|+++... .+..+...... ..++ .||.++....
T Consensus 117 -----------~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 117 -----------SSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLT 184 (394)
T ss_pred -----------CCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcc
Confidence 0022345566677777753 466899999998653 12222221111 1222 3566665543
Q ss_pred HHh--------hcCCceEEcCCCCHHHHHHHHHHhhCCCC-CCCcchHHHHHHHHhc----CCcchHHHHHH
Q 002939 149 VLG--------SIGSKTFQIDVLNEEEAWTLFKKMTGDCA-EKGELNFVAIDITKEC----GGLPIAIVTLA 207 (864)
Q Consensus 149 v~~--------~~~~~~~~l~~L~~~e~~~l~~~~~~~~~-~~~~~~~~~~~i~~~~----~g~Pla~~~~~ 207 (864)
+.. ..+...+.+++.+.++..+++..++.... ...-.++....+++.+ +..+.|+.++-
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~ 256 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLR 256 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 322 12235679999999999999998872211 1111233344454444 44666665543
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.9e-10 Score=113.75 Aligned_cols=214 Identities=19% Similarity=0.248 Sum_probs=142.0
Q ss_pred hhcCCcceeecccccccccccccccCcccccCccEEEeecCCccccc--hhHHHHcccccEEEEEccccccccccccchh
Q 002939 572 KVLPNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLA--PDLLERFHNLVNLELADGSYKELFSNEGQVE 649 (864)
Q Consensus 572 ~~l~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~ 649 (864)
..+.+|++..+.+++ ....... --...+++++.|+++.|.+.... ..+..++|+|+.|+++.|.+..- . + .
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~-~-~---s 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIE-EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF-I-S---S 190 (505)
T ss_pred hhHHhhhheeecCcc-ccccchh-hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC-c-c---c
Confidence 347889999998884 2211111 11234889999999999887654 34567999999999999888421 1 0 1
Q ss_pred hhcccccccceeecCCCcCccccccccccccccccccCccEEEeecccccccccCCccccCCccEEEEecCcCceeeech
Q 002939 650 KLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKNLLPSSASFRCLTKLSVWCCEQLINLVTS 729 (864)
Q Consensus 650 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 729 (864)
..-..+++|++|.|++|. +. |..-......||+|+.|.+..++.+.........+..|++|+|++. ++.+....
T Consensus 191 ~~~~~l~~lK~L~l~~CG-ls----~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N-~li~~~~~ 264 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCG-LS----WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN-NLIDFDQG 264 (505)
T ss_pred cchhhhhhhheEEeccCC-CC----HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC-cccccccc
Confidence 112257889999999974 32 2233444567999999999985444333334456788999999974 55555444
Q ss_pred hhhhhhccccEEEecCccchHHhhhccccccCcceeeccccCeeecCccccccccccCCceeecCccceeec
Q 002939 730 SAAKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFCSANYTFKFPSLCYLSV 801 (864)
Q Consensus 730 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i 801 (864)
.....++.|..|+++.|. +.++.. .-.+.......||+|+.|++.. +++.+++.-+..+.+++|+.|.+
T Consensus 265 ~~~~~l~~L~~Lnls~tg-i~si~~-~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTG-IASIAE-PDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred cccccccchhhhhccccC-cchhcC-CCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhc
Confidence 566788889999888863 333321 1111112334689999999998 78887776566667778888876
No 38
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.85 E-value=1.2e-07 Score=95.79 Aligned_cols=153 Identities=16% Similarity=0.203 Sum_probs=95.6
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC-CChHHHHHHHHHHhCCccccchhhhhcc
Q 002939 7 VQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET-PDIGKIQGELADQLGMKFSQGEIADQRG 85 (864)
Q Consensus 7 i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 85 (864)
|..++....+.-..+|||+|+||||||+.++...... |. .++.. ..+++
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~--f~-----~~sAv~~gvkd----------------------- 88 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA--FE-----ALSAVTSGVKD----------------------- 88 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc--eE-----EeccccccHHH-----------------------
Confidence 4456667788899999999999999999999976544 32 22221 11222
Q ss_pred ccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEE--EeCChHHH--hh-cC-Cce
Q 002939 86 MKFSQESDVPGRARKLYARLQKENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLL--TARDRHVL--GS-IG-SKT 157 (864)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv--TtR~~~v~--~~-~~-~~~ 157 (864)
.....++-++....+++.+|++|.|... .+=+.|.+. -.+|.-|+| ||-++... .. .+ ..+
T Consensus 89 --------lr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~---vE~G~iilIGATTENPsF~ln~ALlSR~~v 157 (436)
T COG2256 89 --------LREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPH---VENGTIILIGATTENPSFELNPALLSRARV 157 (436)
T ss_pred --------HHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhh---hcCCeEEEEeccCCCCCeeecHHHhhhhhe
Confidence 2233333434444589999999999654 344444433 344777777 55555322 11 22 789
Q ss_pred EEcCCCCHHHHHHHHHHhhCCC----C-CCCcc-hHHHHHHHHhcCCcc
Q 002939 158 FQIDVLNEEEAWTLFKKMTGDC----A-EKGEL-NFVAIDITKECGGLP 200 (864)
Q Consensus 158 ~~l~~L~~~e~~~l~~~~~~~~----~-~~~~~-~~~~~~i~~~~~g~P 200 (864)
+++++|+.++..+++.+.+.+. . ....+ ++.-..+++.++|=-
T Consensus 158 f~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 158 FELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred eeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 9999999999999999854111 1 11112 335556777777743
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.83 E-value=2e-10 Score=119.52 Aligned_cols=172 Identities=24% Similarity=0.332 Sum_probs=95.1
Q ss_pred hccceEEEeecCCccCCCCCC-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEE
Q 002939 315 LKKCSTISLHGNNISEIPQGW-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLC 393 (864)
Q Consensus 315 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~ 393 (864)
+......+++.|.+..+|..+ .+..|+.+.+..|.++. +|..+ .++..|.+|+|+.|+++.+|..++.|+ |++|-
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~--ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRT--IPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhcccee--cchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEE
Confidence 344445566666666666655 45555555555544442 33333 455666666666666666665555443 56666
Q ss_pred ecCcccccc-ccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecccccc---
Q 002939 394 LDGCKLEDI-RIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCI--- 469 (864)
Q Consensus 394 L~~~~l~~l-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~--- 469 (864)
+++|+++.+ +.++.+..|..||.+.|.+..+|..++.+..|+.|.++.|. +..+|+. +..| .|..||++.|++
T Consensus 150 ~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis~i 226 (722)
T KOG0532|consen 150 VSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKISYL 226 (722)
T ss_pred EecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCceeec
Confidence 666666555 34555566666666666666666666666666666666654 5555544 3322 455566665553
Q ss_pred ccccccCCcchhhhcCCCCccCCC
Q 002939 470 KWEISNCSLLEEIVGKEGGVEADP 493 (864)
Q Consensus 470 ~~~~~~~~~L~~L~~~~~~~~~~~ 493 (864)
+-.|.+|+.|+.|-+..|.+.+.+
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred chhhhhhhhheeeeeccCCCCCCh
Confidence 234555555555555555544433
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.82 E-value=5.5e-10 Score=106.70 Aligned_cols=131 Identities=24% Similarity=0.262 Sum_probs=98.4
Q ss_pred hhccceEEEeecCCccCCCCCC-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEE
Q 002939 314 LLKKCSTISLHGNNISEIPQGW-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTL 392 (864)
Q Consensus 314 ~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L 392 (864)
.++.+..+++++|.++.+.... -.|.+|.|+++.|.... +.. +..+++|..|||++|.+.++..+-..+-|.+.|
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~--v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT--VQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceee--ehh--hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 3567888888888888887777 56788888888755442 322 467888888888888888777666677788888
Q ss_pred EecCccccccccccccCcccEEeCCCCCCccCc--hhhccccccceecccccccccccC
Q 002939 393 CLDGCKLEDIRIIGELKELEILSLQGCDIEHLP--REIGQLTQLKLLDLSYCFELKVIA 449 (864)
Q Consensus 393 ~L~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~~~ 449 (864)
.|++|.+++++.++++.+|.+||+++|+|..+. ..|++++-|++|.+.+|. +..++
T Consensus 358 ~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 358 KLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred ehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence 888888888888888888888888888877553 457778888888887776 55444
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.2e-09 Score=110.21 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=21.7
Q ss_pred ccCccEEEeecCCccccch-hHHHHcccccEEEEEccccc
Q 002939 601 LNKLKVLAIENDKSEVLAP-DLLERFHNLVNLELADGSYK 639 (864)
Q Consensus 601 ~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~ 639 (864)
+++|+.|++..|++...+. ..+..+++|+.|.+.+|.++
T Consensus 300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 4555555555555543332 12345667777777776664
No 42
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.79 E-value=4.7e-07 Score=97.88 Aligned_cols=189 Identities=17% Similarity=0.212 Sum_probs=115.4
Q ss_pred chHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhhhccC-C---CeEEEEEccCCCChHHHHHHHHHHhC-
Q 002939 2 STLKNVQNALL----DPDISIIGMYGMGGVGKTTLVKEVARRAKKDML-F---DEVVFAEVSETPDIGKIQGELADQLG- 72 (864)
Q Consensus 2 ~~~~~i~~~l~----~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~-f---~~~~~v~~~~~~~~~~~~~~i~~~l~- 72 (864)
+++++|..++. +...+.+.|+|++|+|||++++.++++...... . -.++|+++....+..+++..++.++.
T Consensus 22 ~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~ 101 (365)
T TIGR02928 22 EQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRG 101 (365)
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46777777775 344578999999999999999999987643211 1 14678999888888899999999983
Q ss_pred --CccccchhhhhccccccCCCChhhHHHHHHHHHhc-CCeEEEEEcCCCchh-c----cccccCC--CCC-CCCCcEEE
Q 002939 73 --MKFSQGEIADQRGMKFSQESDVPGRARKLYARLQK-ENKILVILDNIWEDL-D----LEKVGVP--SGN-DWRGCKVL 141 (864)
Q Consensus 73 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LlvlDdv~~~~-~----~~~l~~~--~~~-~~~gs~Ii 141 (864)
.... ....+..+....+.+.+.. +++++||+|+++... . +..+... ... ......+|
T Consensus 102 ~~~~~~------------~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 102 SGEEVP------------TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred cCCCCC------------CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEE
Confidence 2211 0012334455666666643 568899999998762 1 1122111 011 11223455
Q ss_pred EEeCChHHHhh--------cCCceEEcCCCCHHHHHHHHHHhhCCC-C---CCCcchHHHHHHHHhcCCcchH
Q 002939 142 LTARDRHVLGS--------IGSKTFQIDVLNEEEAWTLFKKMTGDC-A---EKGELNFVAIDITKECGGLPIA 202 (864)
Q Consensus 142 vTtR~~~v~~~--------~~~~~~~l~~L~~~e~~~l~~~~~~~~-~---~~~~~~~~~~~i~~~~~g~Pla 202 (864)
.++........ +....+.+++.+.++..+++..++... . -.++..+...+++....|.|-.
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~ 242 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARK 242 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHH
Confidence 55544432221 113568999999999999999887311 1 1112222334556666787753
No 43
>PRK06893 DNA replication initiation factor; Validated
Probab=98.74 E-value=8e-08 Score=95.21 Aligned_cols=149 Identities=16% Similarity=0.143 Sum_probs=91.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
..+.+.+||++|+|||+|++.+++....+ ...+.|+++.....
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~~----------------------------------- 80 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQY----------------------------------- 80 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhhh-----------------------------------
Confidence 34678999999999999999999997654 33567777532100
Q ss_pred hhHHHHHHHHHhcCCeEEEEEcCCCch---hcccc-ccCCCCCC-CCCcEEEE-EeCC---------hHHHhhcC-CceE
Q 002939 95 PGRARKLYARLQKENKILVILDNIWED---LDLEK-VGVPSGND-WRGCKVLL-TARD---------RHVLGSIG-SKTF 158 (864)
Q Consensus 95 ~~~~~~~~~~l~~~~~~LlvlDdv~~~---~~~~~-l~~~~~~~-~~gs~Iiv-TtR~---------~~v~~~~~-~~~~ 158 (864)
....+.+.+ .+.-+||+||++.. .+|+. +...+... ..|+.+|| |++. +.+..++. ...+
T Consensus 81 --~~~~~~~~~--~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~ 156 (229)
T PRK06893 81 --FSPAVLENL--EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIY 156 (229)
T ss_pred --hhHHHHhhc--ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCee
Confidence 000112222 23358999999864 33432 22212111 13555654 4543 23444444 5789
Q ss_pred EcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHH
Q 002939 159 QIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVT 205 (864)
Q Consensus 159 ~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~ 205 (864)
+++++++++.++++++.+.... -.--++...-|++++.|-.-.+..
T Consensus 157 ~l~~pd~e~~~~iL~~~a~~~~-l~l~~~v~~~L~~~~~~d~r~l~~ 202 (229)
T PRK06893 157 QLNDLTDEQKIIVLQRNAYQRG-IELSDEVANFLLKRLDRDMHTLFD 202 (229)
T ss_pred eCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHH
Confidence 9999999999999998873221 222356677888888876655443
No 44
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.67 E-value=8e-08 Score=86.68 Aligned_cols=117 Identities=21% Similarity=0.270 Sum_probs=80.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcc---CCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDM---LFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQE 91 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~---~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 91 (864)
+.+.+.|+|++|+|||+++++++.+..... .-..++|+.+....+...+...++.+++..... .
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------------~ 69 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-------------R 69 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------T
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------c
Confidence 347899999999999999999999865321 023477999988889999999999999876551 2
Q ss_pred CChhhHHHHHHHHHhcCCeEEEEEcCCCch-h--ccccccCCCCCCCCCcEEEEEeCC
Q 002939 92 SDVPGRARKLYARLQKENKILVILDNIWED-L--DLEKVGVPSGNDWRGCKVLLTARD 146 (864)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~-~--~~~~l~~~~~~~~~gs~IivTtR~ 146 (864)
.+.....+.+.+.+.+.+..+||+|+++.. . .++.+... .. ..+.+||+..+.
T Consensus 70 ~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l-~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 70 QTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSL-LN-ESNIKVVLVGTP 125 (131)
T ss_dssp S-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHH-TC-SCBEEEEEEESS
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHH-Hh-CCCCeEEEEECh
Confidence 345666778888888777789999999765 2 23333221 11 446678877765
No 45
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.66 E-value=1.9e-07 Score=93.35 Aligned_cols=162 Identities=15% Similarity=0.166 Sum_probs=99.8
Q ss_pred hHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhh
Q 002939 3 TLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIAD 82 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 82 (864)
.++++..++.....+.+.|+|++|+|||++|+.+++..... ....+|++++..... .
T Consensus 25 ~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~~------~--------------- 81 (226)
T TIGR03420 25 LLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQA------D--------------- 81 (226)
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHHh------H---------------
Confidence 45677777666667899999999999999999999886543 345677776543210 0
Q ss_pred hccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchh---cc-ccccCCCCC-CCCCcEEEEEeCChH---------
Q 002939 83 QRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDL---DL-EKVGVPSGN-DWRGCKVLLTARDRH--------- 148 (864)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~---~~-~~l~~~~~~-~~~gs~IivTtR~~~--------- 148 (864)
..+...+. +.-+||+||++... .| +.+...+.. ...+.+||+||+...
T Consensus 82 ----------------~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~ 143 (226)
T TIGR03420 82 ----------------PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPD 143 (226)
T ss_pred ----------------HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHH
Confidence 01111122 22389999997653 22 223222111 112347899888532
Q ss_pred HHhhcC-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHH
Q 002939 149 VLGSIG-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTL 206 (864)
Q Consensus 149 v~~~~~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~ 206 (864)
+...+. ...+++++++.++...++...+.... ..--++....+++.+.|.|..+..+
T Consensus 144 L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~l~~L~~~~~gn~r~L~~~ 201 (226)
T TIGR03420 144 LRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG-LQLPDEVADYLLRHGSRDMGSLMAL 201 (226)
T ss_pred HHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHH
Confidence 122232 46789999999999999887652111 1122455667788888888766544
No 46
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=1.6e-06 Score=98.31 Aligned_cols=191 Identities=16% Similarity=0.107 Sum_probs=101.8
Q ss_pred hHHHHHHHhcCCCccE-EEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPDISI-IGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~v-i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.++.|.+++..+++.- +.++|+.|+||||+|+.+++.............-.| .-...+........ .+.
T Consensus 24 Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C-------~sC~~i~~g~~~Dv--iEi- 93 (944)
T PRK14949 24 VLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC-------SSCVEIAQGRFVDL--IEV- 93 (944)
T ss_pred HHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc-------hHHHHHhcCCCceE--EEe-
Confidence 3456667777777765 479999999999999999988654311110000000 00000110000000 000
Q ss_pred hhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEeCCh-HHHhhcC--Cc
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTARDR-HVLGSIG--SK 156 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~-~v~~~~~--~~ 156 (864)
+ .......+...++.+.+...-..+++-++|||+++.. ...+.++..+.......++|++|.+. .+..... ..
T Consensus 94 d--Aas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq 171 (944)
T PRK14949 94 D--AASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCL 171 (944)
T ss_pred c--cccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhhe
Confidence 0 0000000111122222221112367789999999765 34555544444333355666666543 3433222 68
Q ss_pred eEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHH
Q 002939 157 TFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTL 206 (864)
Q Consensus 157 ~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~ 206 (864)
.+++++++.++..+++.+.+... .....++....|++.++|.|-.+..+
T Consensus 172 ~f~fkpLs~eEI~~~L~~il~~E-gI~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 172 QFNLKSLTQDEIGTQLNHILTQE-QLPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 89999999999999999877321 11222456678999999988644333
No 47
>PF13173 AAA_14: AAA domain
Probab=98.63 E-value=5.6e-08 Score=86.70 Aligned_cols=118 Identities=23% Similarity=0.256 Sum_probs=80.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPG 96 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (864)
+++.|.|+.|+||||++++++.+.. ....++|+++......... ..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~------------------------------~~~ 49 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA------------------------------DPD 49 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh------------------------------hhh
Confidence 6899999999999999999998876 2355788876654321100 000
Q ss_pred HHHHHHHHHhcCCeEEEEEcCCCchhccccccCCCCCCCCCcEEEEEeCChHHHhh-----c-C-CceEEcCCCCHHHH
Q 002939 97 RARKLYARLQKENKILVILDNIWEDLDLEKVGVPSGNDWRGCKVLLTARDRHVLGS-----I-G-SKTFQIDVLNEEEA 168 (864)
Q Consensus 97 ~~~~~~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~~~-----~-~-~~~~~l~~L~~~e~ 168 (864)
..+.+.+.. ..++.++++|++....+|......+.+.....+|++|+.+...... . + ...+++.||+-.|.
T Consensus 50 ~~~~~~~~~-~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 50 LLEYFLELI-KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hHHHHHHhh-ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 122233332 2477889999999888888776666655556799999988765532 1 2 45679999987764
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.2e-09 Score=102.71 Aligned_cols=109 Identities=19% Similarity=0.218 Sum_probs=56.5
Q ss_pred CccEEEeecCCcccc-chhHHHHcccccEEEEEccccccccccccchhhhcccccccceeecCCCcCccccccccccccc
Q 002939 603 KLKVLAIENDKSEVL-APDLLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKL 681 (864)
Q Consensus 603 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 681 (864)
.|+.|++++..++.. .-.++..|..|+.|.+.++.+ +..+-..+..-.+|+.|+|+.|.+++.. .....
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L------dD~I~~~iAkN~~L~~lnlsm~sG~t~n----~~~ll 255 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL------DDPIVNTIAKNSNLVRLNLSMCSGFTEN----ALQLL 255 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc------CcHHHHHHhccccceeeccccccccchh----HHHHH
Confidence 455555555444332 223355677777777777776 3444445555566777777777666553 11222
Q ss_pred cccccCccEEEeecccccccccCCc--cccCCccEEEEecCc
Q 002939 682 NMIFQNLETLDISFCRNLKNLLPSS--ASFRCLTKLSVWCCE 721 (864)
Q Consensus 682 ~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~~L~~L~l~~c~ 721 (864)
..++..|..|+++.|...+...... .--++|+.|++++|.
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 3445566666666664333221110 123445555555543
No 49
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=2e-06 Score=95.51 Aligned_cols=188 Identities=13% Similarity=0.085 Sum_probs=103.9
Q ss_pred hHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPDI-SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.++.|.+++..+++ ..+.++|+.|+||||+|+.+.+....+..++. ..|.. -...+.|.. +......++.
T Consensus 24 Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~---~PCG~----C~sCr~I~~--G~h~DviEID 94 (830)
T PRK07003 24 VVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS---QPCGV----CRACREIDE--GRFVDYVEMD 94 (830)
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC---CCCcc----cHHHHHHhc--CCCceEEEec
Confidence 45667777777665 45689999999999999999987654321111 00100 000111110 0000000000
Q ss_pred hhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCChHH-HhhcC
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARDRHV-LGSIG 154 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~~v-~~~~~ 154 (864)
.. .....+.++.+.+... .++.-++|||+++... .++.+...+.......++|+||++... .....
T Consensus 95 Aa-------s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIr 167 (830)
T PRK07003 95 AA-------SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVL 167 (830)
T ss_pred cc-------ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhh
Confidence 00 0001111222222221 2455689999998664 366665544444446688888877543 22222
Q ss_pred --CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcch-HHHHHH
Q 002939 155 --SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPI-AIVTLA 207 (864)
Q Consensus 155 --~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-a~~~~~ 207 (864)
...++++.++.++..+.+.+.+.... ....++....|++.++|.+- ++..+-
T Consensus 168 SRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg-I~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 168 SRCLQFNLKQMPAGHIVSHLERILGEER-IAFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred hheEEEecCCcCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 68899999999999999998773211 11224556788999988654 555433
No 50
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.59 E-value=3.7e-06 Score=91.52 Aligned_cols=160 Identities=16% Similarity=0.198 Sum_probs=96.6
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccc
Q 002939 7 VQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGM 86 (864)
Q Consensus 7 i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 86 (864)
+..++.......+.++|++|+||||+|+.+++..... | +.++.... ...+
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~--~---~~l~a~~~-~~~~------------------------ 76 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP--F---EALSAVTS-GVKD------------------------ 76 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E---EEEecccc-cHHH------------------------
Confidence 6677777777889999999999999999999875432 2 22222211 1111
Q ss_pred cccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEE--eCChH--HHhh-cC-CceE
Q 002939 87 KFSQESDVPGRARKLYARLQKENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLT--ARDRH--VLGS-IG-SKTF 158 (864)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivT--tR~~~--v~~~-~~-~~~~ 158 (864)
.....+........+++.+|++|+++.. .+.+.+...+.. |..+++. |.+.. +... .+ ...+
T Consensus 77 -------ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR~~~~ 146 (413)
T PRK13342 77 -------LREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSRAQVF 146 (413)
T ss_pred -------HHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhccceee
Confidence 1111222222222468889999999865 334444433332 4445553 33332 1111 12 5788
Q ss_pred EcCCCCHHHHHHHHHHhhCCCC-CC-CcchHHHHHHHHhcCCcchHHHHH
Q 002939 159 QIDVLNEEEAWTLFKKMTGDCA-EK-GELNFVAIDITKECGGLPIAIVTL 206 (864)
Q Consensus 159 ~l~~L~~~e~~~l~~~~~~~~~-~~-~~~~~~~~~i~~~~~g~Pla~~~~ 206 (864)
++.+++.++..+++.+.+.... .. .-.++....+++.++|.+..+..+
T Consensus 147 ~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 147 ELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred EeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999998763211 11 233556778899999998765443
No 51
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=4e-06 Score=89.66 Aligned_cols=191 Identities=14% Similarity=0.080 Sum_probs=104.1
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.++.|..++..+++. .+.++|+.|+||||+|+.++............ .+.....- +.+........- ++.
T Consensus 26 iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~---pCg~C~sC----~~i~~g~~~dvi--EId 96 (484)
T PRK14956 26 AIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNE---PCNECTSC----LEITKGISSDVL--EID 96 (484)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcc---ccCCCcHH----HHHHccCCccce--eec
Confidence 345677777777765 58999999999999999999976543211111 11111111 112111111000 000
Q ss_pred hhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEeCC-hHHHhhcC--Cc
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTARD-RHVLGSIG--SK 156 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~-~~v~~~~~--~~ 156 (864)
.... .+.++..+..+.+...-..++.-++|+|+++.. ..++++...+........+|++|.. ..+..... ..
T Consensus 97 aas~---~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq 173 (484)
T PRK14956 97 AASN---RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQ 173 (484)
T ss_pred hhhc---ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhh
Confidence 0000 001111222222222222356679999999765 3466665555433334555555544 44433222 57
Q ss_pred eEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcch-HHHHH
Q 002939 157 TFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPI-AIVTL 206 (864)
Q Consensus 157 ~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-a~~~~ 206 (864)
.|.+.+++.++..+++.+.+.... ..-.++....|++.++|-+. |+..+
T Consensus 174 ~~~f~~ls~~~i~~~L~~i~~~Eg-i~~e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 174 DFIFKKVPLSVLQDYSEKLCKIEN-VQYDQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred eeeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCChHHHHHHHH
Confidence 899999999999999988763211 11224566789999999886 44443
No 52
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=4.1e-06 Score=87.75 Aligned_cols=166 Identities=15% Similarity=0.215 Sum_probs=105.3
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhh----ccCCCeEEEEEc-cCCCChHHHHHHHHHHhCCccc
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKK----DMLFDEVVFAEV-SETPDIGKIQGELADQLGMKFS 76 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~----~~~f~~~~~v~~-~~~~~~~~~~~~i~~~l~~~~~ 76 (864)
.++++..++..++.+ ...++|+.|+||||+|+.++...-. ..|+|...|... .....+++ .+++.+.+...
T Consensus 12 ~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~~~~~~-- 88 (313)
T PRK05564 12 IKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIEEVNKK-- 88 (313)
T ss_pred HHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHHHHhcC--
Confidence 356677788776654 6689999999999999999986532 345565555432 12222222 22333322110
Q ss_pred cchhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCc--hhccccccCCCCCCCCCcEEEEEeCChHHH-hhc
Q 002939 77 QGEIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWE--DLDLEKVGVPSGNDWRGCKVLLTARDRHVL-GSI 153 (864)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~IivTtR~~~v~-~~~ 153 (864)
-. .+++-++|+|+++. ...++.+...+.....++.+|++|.+.... ...
T Consensus 89 ---------------------------p~-~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI 140 (313)
T PRK05564 89 ---------------------------PY-EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI 140 (313)
T ss_pred ---------------------------cc-cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 01 24555677777654 455777777777666788888888766432 222
Q ss_pred C--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHH
Q 002939 154 G--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIV 204 (864)
Q Consensus 154 ~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~ 204 (864)
. ...+++.+++.++....+.+.... ..++.+..++..++|.|..+.
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISYKYND-----IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHHhcC-----CCHHHHHHHHHHcCCCHHHHH
Confidence 2 688999999999998888776431 112345678899999887543
No 53
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.54 E-value=2.5e-06 Score=82.14 Aligned_cols=154 Identities=18% Similarity=0.127 Sum_probs=96.1
Q ss_pred HHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcc--------------------CCCeEEEEEccC-CCChHH
Q 002939 5 KNVQNALLDPDI-SIIGMYGMGGVGKTTLVKEVARRAKKDM--------------------LFDEVVFAEVSE-TPDIGK 62 (864)
Q Consensus 5 ~~i~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~~~v~~~~-~~~~~~ 62 (864)
+.+.+.+..++. ..+.++|+.|+||||+|+.+........ +.|.. ++.... ...
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~-~~~~~~~~~~--- 77 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLH-RLEPEGQSIK--- 77 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEE-EeccccCcCC---
Confidence 356677777666 5789999999999999999998865431 11111 111110 111
Q ss_pred HHHHHHHHhCCccccchhhhhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCchh--ccccccCCCCCCCC
Q 002939 63 IQGELADQLGMKFSQGEIADQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWEDL--DLEKVGVPSGNDWR 136 (864)
Q Consensus 63 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~ 136 (864)
.+.+..+.+.+. .+++-++|+||++... ..+.+...+.....
T Consensus 78 --------------------------------~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~ 125 (188)
T TIGR00678 78 --------------------------------VDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPP 125 (188)
T ss_pred --------------------------------HHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCC
Confidence 111222222222 2567789999997653 35555555544444
Q ss_pred CcEEEEEeCCh-HHHhhcC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcch
Q 002939 137 GCKVLLTARDR-HVLGSIG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPI 201 (864)
Q Consensus 137 gs~IivTtR~~-~v~~~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 201 (864)
.+.+|++|++. .+..... ...+++.+++.++..+++.+. + ..++.+..+++.++|.|.
T Consensus 126 ~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g------i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 126 NTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G------ISEEAAELLLALAGGSPG 186 (188)
T ss_pred CeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C------CCHHHHHHHHHHcCCCcc
Confidence 56677777654 3333222 578999999999999998886 2 124567789999999885
No 54
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=9.5e-06 Score=86.58 Aligned_cols=183 Identities=16% Similarity=0.160 Sum_probs=99.1
Q ss_pred HHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhh
Q 002939 4 LKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIAD 82 (864)
Q Consensus 4 ~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 82 (864)
++.+.+.+..++++ .+.++|+.|+||||+|+.+++.......... .....-...+++......... +. +
T Consensus 25 ~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-------~pc~~c~~c~~~~~~~~~d~~--~~-~ 94 (363)
T PRK14961 25 VTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-------NPCRKCIICKEIEKGLCLDLI--EI-D 94 (363)
T ss_pred HHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCCCHHHHHHhcCCCCceE--Ee-c
Confidence 45566666665554 5789999999999999999988653211100 000000001111111000000 00 0
Q ss_pred hccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCCh-HHHhhcC-
Q 002939 83 QRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARDR-HVLGSIG- 154 (864)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~-~v~~~~~- 154 (864)
. ......+..+.+.+.+. .+++-++|+|+++... .++.+...+.......++|++|.+. .+.....
T Consensus 95 ~------~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~S 168 (363)
T PRK14961 95 A------ASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILS 168 (363)
T ss_pred c------cccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHh
Confidence 0 00011112223333322 2456699999998664 3555555444444456677766554 3333222
Q ss_pred -CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHH
Q 002939 155 -SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAI 203 (864)
Q Consensus 155 -~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~ 203 (864)
...+++++++.++..+++.+.+.... ..-.++.+..|++.++|.|-.+
T Consensus 169 Rc~~~~~~~l~~~el~~~L~~~~~~~g-~~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 169 RCLQFKLKIISEEKIFNFLKYILIKES-IDTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hceEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 57899999999999999888762211 1122345667899999988643
No 55
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.53 E-value=6.7e-09 Score=108.37 Aligned_cols=133 Identities=25% Similarity=0.336 Sum_probs=84.9
Q ss_pred hhccceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEE
Q 002939 314 LLKKCSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLC 393 (864)
Q Consensus 314 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~ 393 (864)
.+..+..++++.|+++.+|..+..--|++|.+..|+.. .+|..+ +....|..||.+.|.+..+|+.++++..|+.|.
T Consensus 119 ~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~--~lp~~i-g~~~tl~~ld~s~nei~slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLT--SLPEEI-GLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLN 195 (722)
T ss_pred hhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccc--cCCccc-ccchhHHHhhhhhhhhhhchHHhhhHHHHHHHH
Confidence 45566666777777777776664445666666654433 355554 456667777777777777777777777777777
Q ss_pred ecCcccccc-ccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChh
Q 002939 394 LDGCKLEDI-RIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPN 451 (864)
Q Consensus 394 L~~~~l~~l-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~ 451 (864)
++.|.+..+ +.++. -.|..||+++|++..+|-.|.+|++|++|-|.+|. +.+-|..
T Consensus 196 vrRn~l~~lp~El~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAq 252 (722)
T KOG0532|consen 196 VRRNHLEDLPEELCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQ 252 (722)
T ss_pred HhhhhhhhCCHHHhC-CceeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHH
Confidence 777766665 33443 34666777777777777777777777777777665 5554443
No 56
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=5.3e-09 Score=100.16 Aligned_cols=186 Identities=21% Similarity=0.158 Sum_probs=123.1
Q ss_pred CCcceeecccccccccccccccCcccccCccEEEeecCCccccchhHHHHcccccEEEEE-ccccccccccccchhhhcc
Q 002939 575 PNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELA-DGSYKELFSNEGQVEKLVG 653 (864)
Q Consensus 575 ~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~-~~~l~~~~~~~~~l~~~~~ 653 (864)
+.|+.|++++...-..-+.+.+. .+.+|+.|.+.++.+..-....+..=.+|+.|+++ ++.++ .....-.+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs--~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t-----~n~~~ll~~ 257 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILS--QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT-----ENALQLLLS 257 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHH--HHHhhhhccccccccCcHHHHHHhccccceeeccccccccc-----hhHHHHHHH
Confidence 35888888876321122222222 27889999999998888776667788899999999 77776 344555678
Q ss_pred cccccceeecCCCcCccccccccccccccccccCccEEEeeccccccc---ccCCccccCCccEEEEecCcCceeeechh
Q 002939 654 KLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKN---LLPSSASFRCLTKLSVWCCEQLINLVTSS 730 (864)
Q Consensus 654 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~---~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 730 (864)
+|..|..|+|+.|.-.+.. ........-++|..|++++|.+--. +.--...+|+|..||+++|..++. ....
T Consensus 258 scs~L~~LNlsWc~l~~~~----Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~ 332 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEK----VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQ 332 (419)
T ss_pred hhhhHhhcCchHhhccchh----hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHH
Confidence 8999999999998654433 1122233467899999999854211 111125788888888888877766 3345
Q ss_pred hhhhhccccEEEecCccchHHhhhccccccCcceeeccccCeeecCccc
Q 002939 731 AAKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRLQ 779 (864)
Q Consensus 731 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 779 (864)
.+..++.|++|.++.|..+..-..-.+ ...|+|.+|++.+|-
T Consensus 333 ~~~kf~~L~~lSlsRCY~i~p~~~~~l-------~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 333 EFFKFNYLQHLSLSRCYDIIPETLLEL-------NSKPSLVYLDVFGCV 374 (419)
T ss_pred HHHhcchheeeehhhhcCCChHHeeee-------ccCcceEEEEecccc
Confidence 566777888888888875432221111 135777777777763
No 57
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.51 E-value=2.6e-06 Score=89.38 Aligned_cols=183 Identities=15% Similarity=0.154 Sum_probs=102.2
Q ss_pred hHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccc-
Q 002939 3 TLKNVQNALL-----DPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFS- 76 (864)
Q Consensus 3 ~~~~i~~~l~-----~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~- 76 (864)
+++++..++. ....+.+.++|++|+|||++|+.+++..... + ..+.........++ ...+..++...-
T Consensus 12 ~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~l-~~~l~~~~~~~vl 85 (305)
T TIGR00635 12 VKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGDL-AAILTNLEEGDVL 85 (305)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchhH-HHHHHhcccCCEE
Confidence 4555666665 2345678999999999999999999987542 1 22222222222222 222223321110
Q ss_pred -cchhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchhccccccCCCCCCCCCcEEEEEeCChHHHhhcC-
Q 002939 77 -QGEIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDLDLEKVGVPSGNDWRGCKVLLTARDRHVLGSIG- 154 (864)
Q Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~~~~~- 154 (864)
.++.. .- .....+.+...+. +.+..+|+|+..+...+.... + +..-|..|++...+.....
T Consensus 86 ~iDEi~---------~l-~~~~~e~l~~~~~-~~~~~~v~~~~~~~~~~~~~~---~---~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 86 FIDEIH---------RL-SPAVEELLYPAME-DFRLDIVIGKGPSARSVRLDL---P---PFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred EEehHh---------hh-CHHHHHHhhHHHh-hhheeeeeccCccccceeecC---C---CeEEEEecCCccccCHHHHh
Confidence 00000 00 0112233444443 455667777765555543221 1 1345666777644333211
Q ss_pred --CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHHHHH
Q 002939 155 --SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTLAKA 209 (864)
Q Consensus 155 --~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~~~~ 209 (864)
...+++++++.++..+++.+.++.. ...-.++....|++.|+|.|-.+..++..
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~-~~~~~~~al~~ia~~~~G~pR~~~~ll~~ 204 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLL-NVEIEPEAALEIARRSRGTPRIANRLLRR 204 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHhCCCcchHHHHHHH
Confidence 3678999999999999999887422 12223456678999999999866544433
No 58
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.51 E-value=1e-07 Score=104.36 Aligned_cols=102 Identities=35% Similarity=0.416 Sum_probs=49.5
Q ss_pred CceEEEEeccccccCCcccccCCCccEEEecCcccccccccc-ccCcccEEeCCCCCCccCchhhccccccceecccccc
Q 002939 365 KLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDIRIIG-ELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCF 443 (864)
Q Consensus 365 ~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l~~~~-~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~ 443 (864)
+|+.|++++|.+..+|..++++++|+.|++++|++..++... .++.|+.|++++|.+..+|..+..+.+|++|.+++|.
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc
Confidence 455555555555555444555555555555555555553322 5555555555555555555444444445555555553
Q ss_pred cccccChhhhhcCcccceeeccccc
Q 002939 444 ELKVIAPNVLSNLSQLEELYMATCC 468 (864)
Q Consensus 444 ~l~~~~~~~l~~l~~L~~L~l~~~~ 468 (864)
....+.. +.++.++..+.+.++.
T Consensus 221 -~~~~~~~-~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 221 -IIELLSS-LSNLKNLSGLELSNNK 243 (394)
T ss_pred -ceecchh-hhhcccccccccCCce
Confidence 1122111 4444555555444444
No 59
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.50 E-value=1.5e-06 Score=86.00 Aligned_cols=158 Identities=18% Similarity=0.211 Sum_probs=101.0
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccc
Q 002939 7 VQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGM 86 (864)
Q Consensus 7 i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 86 (864)
|.+.++.++++-+.+||++|+||||||+.+....+... +.+|..|....-..-.++|.++-..
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~------------- 215 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN------------- 215 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH-------------
Confidence 44556678889999999999999999999998876542 6677777654433333444443210
Q ss_pred cccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEE--EeCChHHH---hhcC-CceE
Q 002939 87 KFSQESDVPGRARKLYARLQKENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLL--TARDRHVL---GSIG-SKTF 158 (864)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv--TtR~~~v~---~~~~-~~~~ 158 (864)
...+ ..+|.+|++|.|... .|-+.|. +.-.+|..++| ||-++.+- .... ..++
T Consensus 216 ---------------~~~l-~krkTilFiDEiHRFNksQQD~fL---P~VE~G~I~lIGATTENPSFqln~aLlSRC~Vf 276 (554)
T KOG2028|consen 216 ---------------EKSL-TKRKTILFIDEIHRFNKSQQDTFL---PHVENGDITLIGATTENPSFQLNAALLSRCRVF 276 (554)
T ss_pred ---------------HHhh-hcceeEEEeHHhhhhhhhhhhccc---ceeccCceEEEecccCCCccchhHHHHhcccee
Confidence 1122 378899999999644 3444443 33445776666 56555432 1222 6889
Q ss_pred EcCCCCHHHHHHHHHHhh---CCC------CCCC---cchHHHHHHHHhcCCcc
Q 002939 159 QIDVLNEEEAWTLFKKMT---GDC------AEKG---ELNFVAIDITKECGGLP 200 (864)
Q Consensus 159 ~l~~L~~~e~~~l~~~~~---~~~------~~~~---~~~~~~~~i~~~~~g~P 200 (864)
-+++|..++-..++.+.. ++. .+.+ ..+.+..-++..|.|-.
T Consensus 277 vLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 277 VLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred EeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 999999999999988843 221 1121 12345566777777743
No 60
>PLN03025 replication factor C subunit; Provisional
Probab=98.49 E-value=5.6e-06 Score=86.90 Aligned_cols=171 Identities=15% Similarity=0.075 Sum_probs=98.1
Q ss_pred hHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCC-eEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFD-EVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~-~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.++.|..++..++.+.+.++|++|+||||+|+.+++...... |. .++-++.+....... .+++.+.......
T Consensus 21 ~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~eln~sd~~~~~~-vr~~i~~~~~~~~----- 93 (319)
T PLN03025 21 AVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN-YKEAVLELNASDDRGIDV-VRNKIKMFAQKKV----- 93 (319)
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhccc-CccceeeecccccccHHH-HHHHHHHHHhccc-----
Confidence 355666667777777889999999999999999999875432 22 223333333322221 1222211100000
Q ss_pred hhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCCh-HHHhhcC--Cc
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARDR-HVLGSIG--SK 156 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~-~v~~~~~--~~ 156 (864)
....++.-++|+|+++... .-+.+...+......+++|+++... .+..... ..
T Consensus 94 ----------------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 94 ----------------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred ----------------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 0011456799999997653 2223322222223356777777543 2222111 46
Q ss_pred eEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHH
Q 002939 157 TFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAI 203 (864)
Q Consensus 157 ~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~ 203 (864)
.++++++++++....+...+....- .-.++....+++.++|-.-.+
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi-~i~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKV-PYVPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 8999999999999999887732111 112456678899998876533
No 61
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.49 E-value=2e-07 Score=92.22 Aligned_cols=107 Identities=12% Similarity=0.063 Sum_probs=68.0
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC--CChHHHHHHHHHHhCCccccchhhhh
Q 002939 7 VQNALLD-PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET--PDIGKIQGELADQLGMKFSQGEIADQ 83 (864)
Q Consensus 7 i~~~l~~-~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~ 83 (864)
.++.+.- .+...++|+|++|+|||||+++++++.... +|+.++|+.+... +++.++++.+...+-......+
T Consensus 6 ~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~---- 80 (249)
T cd01128 6 VVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEP---- 80 (249)
T ss_pred heeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCC----
Confidence 3444432 345799999999999999999999988765 8999999997666 7899998888333211111000
Q ss_pred ccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCch
Q 002939 84 RGMKFSQESDVPGRARKLYARLQKENKILVILDNIWED 121 (864)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 121 (864)
. ...................+++++++++|++...
T Consensus 81 ~---~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 81 P---ERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred H---HHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHh
Confidence 0 0000001112222333334589999999999654
No 62
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=1.2e-05 Score=88.41 Aligned_cols=183 Identities=15% Similarity=0.056 Sum_probs=102.2
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.++.|..++..++.. .+.++|++|+||||+|+.+++.....+.+...+|.+.+- +.+.. +......+..
T Consensus 22 v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc--------~~i~~--~~h~dv~el~ 91 (504)
T PRK14963 22 VKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC--------LAVRR--GAHPDVLEID 91 (504)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh--------HHHhc--CCCCceEEec
Confidence 355666777776665 559999999999999999999876433332222322110 00100 0000000000
Q ss_pred hhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEeCCh-HHHhhcC
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTARDR-HVLGSIG 154 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~-~v~~~~~ 154 (864)
.. .....+..+.+.+.+. .+++-++|+|+++.. ..++.+...+........+|+++... .+.....
T Consensus 92 ~~-------~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 92 AA-------SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred cc-------ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 00 0001112223333332 246679999999755 33555655554443445555555443 3333222
Q ss_pred --CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHH
Q 002939 155 --SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAI 203 (864)
Q Consensus 155 --~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~ 203 (864)
...+++.+++.++..+++.+.+..... ...++....|++.++|.+--+
T Consensus 165 SRc~~~~f~~ls~~el~~~L~~i~~~egi-~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 165 SRTQHFRFRRLTEEEIAGKLRRLLEAEGR-EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred cceEEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 578999999999999999987732111 112456678999999988644
No 63
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.47 E-value=1e-07 Score=104.31 Aligned_cols=169 Identities=26% Similarity=0.307 Sum_probs=135.1
Q ss_pred ccceEEEeecCCccCCCCCCcCC--CceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEE
Q 002939 316 KKCSTISLHGNNISEIPQGWECP--QLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLC 393 (864)
Q Consensus 316 ~~l~~L~l~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~ 393 (864)
..+..+.+.+|.+.+++...... +|+.|++..+... .++.. ...++.|+.|++++|.+..+|...+.+..|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~--~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE--SLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh--hhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 57899999999999999988554 8999999986555 34333 3789999999999999999998777999999999
Q ss_pred ecCccccccccc-cccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecccccccc-
Q 002939 394 LDGCKLEDIRII-GELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW- 471 (864)
Q Consensus 394 L~~~~l~~l~~~-~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~- 471 (864)
+++|+++.++.. ..+..|++|.+++|++...+..+..+.++..|.+.++. +..++ ..++++++|+.|++++|.+..
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~-~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLP-ESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeecc-chhccccccceecccccccccc
Confidence 999999999664 57777999999999877788888999999999988886 55543 337888999999999887653
Q ss_pred -ccccCCcchhhhcCCCCc
Q 002939 472 -EISNCSLLEEIVGKEGGV 489 (864)
Q Consensus 472 -~~~~~~~L~~L~~~~~~~ 489 (864)
.++...+++.|+++++.+
T Consensus 271 ~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 271 SSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred ccccccCccCEEeccCccc
Confidence 255555555555555443
No 64
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=9.7e-06 Score=89.06 Aligned_cols=189 Identities=12% Similarity=0.086 Sum_probs=101.6
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccCC--CeEEEEEccCCCChHHHHHHHHHHhCCccccch
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDMLF--DEVVFAEVSETPDIGKIQGELADQLGMKFSQGE 79 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~ 79 (864)
.++.|.+++..+++. .+.++|+.|+||||+|+.+.+.....+.- .... +.....-...+.|.. +.....-+
T Consensus 24 vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~I~a--G~hpDviE 97 (700)
T PRK12323 24 VVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTEIDA--GRFVDYIE 97 (700)
T ss_pred HHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHHHHc--CCCCcceE
Confidence 456677778777765 56889999999999999999876542110 0000 000000001111110 00000000
Q ss_pred hhhhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEeCC-hHHHhh
Q 002939 80 IADQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTARD-RHVLGS 152 (864)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~-~~v~~~ 152 (864)
+... .....+.++.+.+.+. .++.-++|+|+++.. ...+.+...+.....+.++|++|.+ ..+...
T Consensus 98 IdAa-------s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 98 MDAA-------SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred eccc-------ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence 0000 0001122222333322 356679999999765 3455555555443345565555554 444432
Q ss_pred cC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHH
Q 002939 153 IG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVT 205 (864)
Q Consensus 153 ~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~ 205 (864)
.. ...++++.++.++..+.+.+.+.... ....++....|++.++|.|.....
T Consensus 171 IrSRCq~f~f~~ls~eei~~~L~~Il~~Eg-i~~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 171 VLSRCLQFNLKQMPPGHIVSHLDAILGEEG-IAHEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 22 68899999999999999888763211 111234456789999999874433
No 65
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.44 E-value=2.2e-07 Score=70.35 Aligned_cols=56 Identities=29% Similarity=0.387 Sum_probs=32.0
Q ss_pred CceEEEEeccccccCC-cccccCCCccEEEecCcccccc--ccccccCcccEEeCCCCC
Q 002939 365 KLKVLLFIRMRLLSLP-SSIRLLTDLRTLCLDGCKLEDI--RIIGELKELEILSLQGCD 420 (864)
Q Consensus 365 ~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~ 420 (864)
+|++|++++|.+..+| ..|.++++|++|++++|.++.+ ..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4556666666666554 3455566666666666655555 235555555555555554
No 66
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.8e-05 Score=83.25 Aligned_cols=162 Identities=22% Similarity=0.251 Sum_probs=109.0
Q ss_pred chHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCcccc
Q 002939 2 STLKNVQNALL----DPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQ 77 (864)
Q Consensus 2 ~~~~~i~~~l~----~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~ 77 (864)
++++++...|. +....-+.|+|.+|+|||+.++.++........-..++||+|....+..+++..|+.+++....
T Consensus 24 ~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~- 102 (366)
T COG1474 24 EEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPL- 102 (366)
T ss_pred HHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCC-
Confidence 45666665554 3444559999999999999999999998765333338999999999999999999999962211
Q ss_pred chhhhhccccccCCCChhhHHHHHHHHHhc-CCeEEEEEcCCCchhcc--ccccCCCCCCC-CCcEEE--EEeCChHHHh
Q 002939 78 GEIADQRGMKFSQESDVPGRARKLYARLQK-ENKILVILDNIWEDLDL--EKVGVPSGNDW-RGCKVL--LTARDRHVLG 151 (864)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LlvlDdv~~~~~~--~~l~~~~~~~~-~gs~Ii--vTtR~~~v~~ 151 (864)
......+....+.+.+.+ ++.+++|+|+++....- +.+...+.... ..++|+ ..+-+.....
T Consensus 103 ------------~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~ 170 (366)
T COG1474 103 ------------TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLD 170 (366)
T ss_pred ------------CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHH
Confidence 134455666777777764 68899999999765332 22221111111 134333 3333333222
Q ss_pred --------hcCCceEEcCCCCHHHHHHHHHHhh
Q 002939 152 --------SIGSKTFQIDVLNEEEAWTLFKKMT 176 (864)
Q Consensus 152 --------~~~~~~~~l~~L~~~e~~~l~~~~~ 176 (864)
..+...+..++-+.+|-.+++..++
T Consensus 171 ~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~ 203 (366)
T COG1474 171 YLDPRVKSSLGPSEIVFPPYTAEELYDILRERV 203 (366)
T ss_pred HhhhhhhhccCcceeeeCCCCHHHHHHHHHHHH
Confidence 2233347889999999999999988
No 67
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.44 E-value=2.2e-06 Score=85.22 Aligned_cols=158 Identities=15% Similarity=0.082 Sum_probs=95.0
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhc
Q 002939 5 KNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQR 84 (864)
Q Consensus 5 ~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 84 (864)
..+..+......+.+.|+|++|+|||+|++.+++..... -..+.|+++.....
T Consensus 34 ~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~------------------------- 86 (235)
T PRK08084 34 AALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW------------------------- 86 (235)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh-------------------------
Confidence 344444445555789999999999999999999986643 34567777643100
Q ss_pred cccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCch---hcccccc-CCCCCC-CCC-cEEEEEeCChHH---------
Q 002939 85 GMKFSQESDVPGRARKLYARLQKENKILVILDNIWED---LDLEKVG-VPSGND-WRG-CKVLLTARDRHV--------- 149 (864)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~---~~~~~l~-~~~~~~-~~g-s~IivTtR~~~v--------- 149 (864)
. ...+.+.+. +.-+|++||+... .+|+... ..+... ..| .++|+||+....
T Consensus 87 --------~----~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L 152 (235)
T PRK08084 87 --------F----VPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDL 152 (235)
T ss_pred --------h----hHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHH
Confidence 0 001122221 1248899999654 2333211 111110 123 379999985522
Q ss_pred HhhcC-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHH
Q 002939 150 LGSIG-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIV 204 (864)
Q Consensus 150 ~~~~~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~ 204 (864)
..++. ..+++++++++++-.+++.+++.... -.--++...-|++.+.|-.-.+.
T Consensus 153 ~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 153 ASRLDWGQIYKLQPLSDEEKLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred HHHHhCCceeeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHH
Confidence 22333 57899999999999999988663221 22335667778888887655443
No 68
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.44 E-value=5.9e-06 Score=92.41 Aligned_cols=164 Identities=17% Similarity=0.110 Sum_probs=100.4
Q ss_pred chHHHHHHHhcC----CC-ccEEEEEcCCCCcHHHHHHHHHHHhhhc---cCCC--eEEEEEccCCCChHHHHHHHHHHh
Q 002939 2 STLKNVQNALLD----PD-ISIIGMYGMGGVGKTTLVKEVARRAKKD---MLFD--EVVFAEVSETPDIGKIQGELADQL 71 (864)
Q Consensus 2 ~~~~~i~~~l~~----~~-~~vi~i~G~~G~GKTtLa~~~~~~~~~~---~~f~--~~~~v~~~~~~~~~~~~~~i~~~l 71 (864)
+++++|..+|.. .+ ..++.|+|++|+|||++++.|.++.... .... .+++|++....+...++..|+++|
T Consensus 762 eEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL 841 (1164)
T PTZ00112 762 KEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQL 841 (1164)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHH
Confidence 466777776652 23 3578899999999999999999876432 1122 367999988888999999999988
Q ss_pred CCccccchhhhhccccccCCCChhhHHHHHHHHHhc--CCeEEEEEcCCCchhc--cccccCCCC-CCCCCcEEEE--Ee
Q 002939 72 GMKFSQGEIADQRGMKFSQESDVPGRARKLYARLQK--ENKILVILDNIWEDLD--LEKVGVPSG-NDWRGCKVLL--TA 144 (864)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~LlvlDdv~~~~~--~~~l~~~~~-~~~~gs~Iiv--Tt 144 (864)
...... .........+++...+.. ....+||||+|+.... =+.+...+. ....+++|+| +|
T Consensus 842 ~g~~P~------------~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 842 FNKKPP------------NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred cCCCCC------------ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEec
Confidence 432220 012233455666666532 2346999999975531 011111110 0112445444 33
Q ss_pred CChH--------HHhhcCCceEEcCCCCHHHHHHHHHHhhC
Q 002939 145 RDRH--------VLGSIGSKTFQIDVLNEEEAWTLFKKMTG 177 (864)
Q Consensus 145 R~~~--------v~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 177 (864)
.+.. +...++...+..++.+.++..+++..++.
T Consensus 910 NdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 910 NTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred CchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHH
Confidence 3221 11122233467799999999999999884
No 69
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=1.8e-05 Score=87.32 Aligned_cols=184 Identities=14% Similarity=0.097 Sum_probs=100.6
Q ss_pred hHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPDI-SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.++.|.+++..++. ..+.++|+.|+||||+|+.+++........+.. ....-...+.+.. +......+..
T Consensus 23 vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~-------pCg~C~sC~~I~~--g~hpDviEID 93 (702)
T PRK14960 23 VSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTST-------PCEVCATCKAVNE--GRFIDLIEID 93 (702)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCC-------CCccCHHHHHHhc--CCCCceEEec
Confidence 35667777777664 477999999999999999999886542111110 0000000011110 0000000000
Q ss_pred hhccccccCCCChhhHHHHHHHHH----hcCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCChH-HHhh-c
Q 002939 82 DQRGMKFSQESDVPGRARKLYARL----QKENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARDRH-VLGS-I 153 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~~-v~~~-~ 153 (864)
.. .....+..+++.... ..+++-++|+|+++... ..+.+...+.....+.++|++|.+.. +... .
T Consensus 94 AA-------s~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIl 166 (702)
T PRK14960 94 AA-------SRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVI 166 (702)
T ss_pred cc-------ccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHH
Confidence 00 000111122222222 12566799999997653 34555544444334567887776643 2221 1
Q ss_pred C-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHH
Q 002939 154 G-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAI 203 (864)
Q Consensus 154 ~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~ 203 (864)
. ...+++++++.++..+.+.+.+.... ....++....|++.++|-+..+
T Consensus 167 SRCq~feFkpLs~eEI~k~L~~Il~kEg-I~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 167 SRCLQFTLRPLAVDEITKHLGAILEKEQ-IAADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred HhhheeeccCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 2 68899999999999999988773211 1222445668999999977644
No 70
>PRK08727 hypothetical protein; Validated
Probab=98.42 E-value=3.6e-06 Score=83.64 Aligned_cols=149 Identities=15% Similarity=0.109 Sum_probs=90.0
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCC
Q 002939 13 DPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQES 92 (864)
Q Consensus 13 ~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 92 (864)
+.....+.|+|++|+|||+|++.+++....+ ...+.|+++.+ ....
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~-------------------------- 83 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGR-------------------------- 83 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhh--------------------------
Confidence 3334579999999999999999999986654 23566776432 1000
Q ss_pred ChhhHHHHHHHHHhcCCeEEEEEcCCCchh---cccc-ccCCCCC-CCCCcEEEEEeCChH---------HHhhcC-Cce
Q 002939 93 DVPGRARKLYARLQKENKILVILDNIWEDL---DLEK-VGVPSGN-DWRGCKVLLTARDRH---------VLGSIG-SKT 157 (864)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~---~~~~-l~~~~~~-~~~gs~IivTtR~~~---------v~~~~~-~~~ 157 (864)
.....+.+ .+.-+||+||++... .|.. +...+.. ..+|..||+|++... +..+.. ...
T Consensus 84 -----~~~~~~~l--~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~ 156 (233)
T PRK08727 84 -----LRDALEAL--EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIR 156 (233)
T ss_pred -----HHHHHHHH--hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCce
Confidence 11122233 244599999997442 2221 2111111 123567999998532 112222 468
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHH
Q 002939 158 FQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAI 203 (864)
Q Consensus 158 ~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~ 203 (864)
++++++++++..+++++++... .-.-.++....|++.+.|-.-.+
T Consensus 157 ~~l~~~~~e~~~~iL~~~a~~~-~l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 157 IGLPVLDDVARAAVLRERAQRR-GLALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred EEecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhCCCCHHHH
Confidence 8999999999999999877321 12223456667888887655433
No 71
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.41 E-value=1.7e-07 Score=70.90 Aligned_cols=58 Identities=33% Similarity=0.469 Sum_probs=34.6
Q ss_pred cccEEeCCCCCCccCc-hhhccccccceecccccccccccChhhhhcCcccceeeccccc
Q 002939 410 ELEILSLQGCDIEHLP-REIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCC 468 (864)
Q Consensus 410 ~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 468 (864)
+|++|++++|+++.+| ..+..+++|++|++++|. ++.+++..|..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 4556666666666554 345556666666666654 566666556666666666666554
No 72
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.40 E-value=3.3e-06 Score=82.73 Aligned_cols=157 Identities=18% Similarity=0.201 Sum_probs=93.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
...+.|+|+.|+|||.|.+++++.......-..++|++ ..++...+...+..
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~---------------------- 85 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRD---------------------- 85 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHT----------------------
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHc----------------------
Confidence 45789999999999999999999987643334577876 34455555555521
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCchhc---ccc-ccCCCCC-CCCCcEEEEEeCChH---------HHhhcC-CceEEc
Q 002939 96 GRARKLYARLQKENKILVILDNIWEDLD---LEK-VGVPSGN-DWRGCKVLLTARDRH---------VLGSIG-SKTFQI 160 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~~~~---~~~-l~~~~~~-~~~gs~IivTtR~~~---------v~~~~~-~~~~~l 160 (864)
.....+.+.+. .-=+|++||++.... |+. +...+.. ...|.+||+|++... ...+.. ...+++
T Consensus 86 ~~~~~~~~~~~--~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l 163 (219)
T PF00308_consen 86 GEIEEFKDRLR--SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVEL 163 (219)
T ss_dssp TSHHHHHHHHC--TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE
T ss_pred ccchhhhhhhh--cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhc
Confidence 12334555553 556899999975522 222 1111110 123668999996431 222233 578999
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHH
Q 002939 161 DVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAI 203 (864)
Q Consensus 161 ~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~ 203 (864)
++.++++..+++.+.+....- .-.++++.-|++.+.+..-.+
T Consensus 164 ~~pd~~~r~~il~~~a~~~~~-~l~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 164 QPPDDEDRRRILQKKAKERGI-ELPEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp ----HHHHHHHHHHHHHHTT---S-HHHHHHHHHHTTSSHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHhhcCCHHHH
Confidence 999999999999998832111 123456667777776554444
No 73
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.38 E-value=7.4e-07 Score=92.75 Aligned_cols=139 Identities=17% Similarity=0.221 Sum_probs=87.0
Q ss_pred HHHcccccEEEEEccccccccccccchhhhcccccccceeecCCCcCccccccccccccccccccCccEEEeeccccccc
Q 002939 622 LERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKN 701 (864)
Q Consensus 622 ~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 701 (864)
+..+.+++.|++++|.++.+|. ..++|+.|.+++|..++.++. ...++|++|++++|..+..
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~----------LP~sLtsL~Lsnc~nLtsLP~--------~LP~nLe~L~Ls~Cs~L~s 109 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV----------LPNELTEITIENCNNLTTLPG--------SIPEGLEKLTVCHCPEISG 109 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC----------CCCCCcEEEccCCCCcccCCc--------hhhhhhhheEccCcccccc
Confidence 4457899999999888865431 124689999999988877621 1246899999999887776
Q ss_pred ccCCccccCCccEEEEecCcCceeeechhhhhhh-ccccEEEecCccchHHhhhccccccCcceeec-cccCeeecCccc
Q 002939 702 LLPSSASFRCLTKLSVWCCEQLINLVTSSAAKNL-VQLVTMKVDGCSKITELVVAIEADEANEEIFF-PKLESLDLNRLQ 779 (864)
Q Consensus 702 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~ 779 (864)
+| ++|+.|++. |.....+ ..+ ++|++|.+.++....... ... .+ ++|+.|.+++|.
T Consensus 110 LP------~sLe~L~L~-~n~~~~L------~~LPssLk~L~I~~~n~~~~~~---lp~------~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 110 LP------ESVRSLEIK-GSATDSI------KNVPNGLTSLSINSYNPENQAR---IDN------LISPSLKTLSLTGCS 167 (426)
T ss_pred cc------cccceEEeC-CCCCccc------ccCcchHhheeccccccccccc---ccc------ccCCcccEEEecCCC
Confidence 64 347777776 3333322 122 357788775533211110 000 13 589999999987
Q ss_pred cccccccCCceeecCccceeecccCC
Q 002939 780 SLTTFCSANYTFKFPSLCYLSVSACP 805 (864)
Q Consensus 780 ~L~~l~~~~~~~~~~~L~~L~i~~C~ 805 (864)
.+. +|. ... .+|+.|.+..+.
T Consensus 168 ~i~-LP~-~LP---~SLk~L~ls~n~ 188 (426)
T PRK15386 168 NII-LPE-KLP---ESLQSITLHIEQ 188 (426)
T ss_pred ccc-Ccc-ccc---ccCcEEEecccc
Confidence 653 332 111 588888887654
No 74
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=2.1e-05 Score=88.10 Aligned_cols=184 Identities=14% Similarity=0.076 Sum_probs=99.4
Q ss_pred HHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhh
Q 002939 4 LKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIAD 82 (864)
Q Consensus 4 ~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 82 (864)
++.|.+.+..+++. .+.++|+.|+||||+|+.+++.......+.. .....- ..++++......+
T Consensus 25 v~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-------~pCg~C----~~C~~i~~g~~~D---- 89 (647)
T PRK07994 25 LTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-------TPCGEC----DNCREIEQGRFVD---- 89 (647)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC-------CCCCCC----HHHHHHHcCCCCC----
Confidence 45566666666654 4679999999999999999987654321110 000000 2222221111000
Q ss_pred hccccccCC-CChhhHHHHHHHHHh----cCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEeCCh-HHHhhcC
Q 002939 83 QRGMKFSQE-SDVPGRARKLYARLQ----KENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTARDR-HVLGSIG 154 (864)
Q Consensus 83 ~~~~~~~~~-~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~-~v~~~~~ 154 (864)
.... ... ....+..+.+.+.+. .+++-++|+|+++.. ...+.+...+.......++|++|.+. .+.....
T Consensus 90 ~iei--daas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~ 167 (647)
T PRK07994 90 LIEI--DAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (647)
T ss_pred ceee--cccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHH
Confidence 0000 000 001111222222222 356779999999755 33555544333333345566555543 3433222
Q ss_pred --CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHH
Q 002939 155 --SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVT 205 (864)
Q Consensus 155 --~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~ 205 (864)
...+++++++.++..+++.+.+.... ....+.....|++.++|.+-.+..
T Consensus 168 SRC~~~~f~~Ls~~ei~~~L~~il~~e~-i~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 168 SRCLQFHLKALDVEQIRQQLEHILQAEQ-IPFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred hhheEeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 68899999999999999988762111 112234556899999998874433
No 75
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.38 E-value=4.3e-06 Score=89.38 Aligned_cols=192 Identities=15% Similarity=0.105 Sum_probs=102.7
Q ss_pred hHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhh
Q 002939 3 TLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIAD 82 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 82 (864)
.++.+..++..++.+.+.++|++|+||||+|+.+++.......-...++++++.-.+ .....+..... ...
T Consensus 23 ~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~---~~~ 93 (337)
T PRK12402 23 VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFD------QGKKYLVEDPR---FAH 93 (337)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhh------cchhhhhcCcc---hhh
Confidence 456677777777767899999999999999999998875432112345666543210 00001100000 000
Q ss_pred hccccccCCCChhhHHHHHHHHHhc-----CCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCChH-HHhhcC
Q 002939 83 QRGMKFSQESDVPGRARKLYARLQK-----ENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARDRH-VLGSIG 154 (864)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~~-v~~~~~ 154 (864)
..+..-.......+....+.+.... +.+-+||+||++... ..+.+...+......+++|+|+.... +.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~ 173 (337)
T PRK12402 94 FLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIR 173 (337)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhc
Confidence 0000000000111222222222211 344589999997553 22233322222233467887775432 222222
Q ss_pred --CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHH
Q 002939 155 --SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIV 204 (864)
Q Consensus 155 --~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~ 204 (864)
...+++.+++.++..+++...+..... .-.++....+++.++|.+-.+.
T Consensus 174 sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-~~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 174 SRCLPLFFRAPTDDELVDVLESIAEAEGV-DYDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred CCceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 467899999999999999887632111 1235567788999988776543
No 76
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.37 E-value=9e-06 Score=85.83 Aligned_cols=171 Identities=15% Similarity=0.127 Sum_probs=94.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccC-CC
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQ-ES 92 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~~ 92 (864)
...+.+.|+|++|+||||+|+.+++..... ..++......... .+..+...+.... +.+-+ .+
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~-----~~~~~~~~~~~~~-~l~~~l~~l~~~~----------vl~IDEi~ 112 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMGVN-----IRITSGPALEKPG-DLAAILTNLEEGD----------VLFIDEIH 112 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhCCC-----eEEEecccccChH-HHHHHHHhcccCC----------EEEEecHh
Confidence 345689999999999999999999987643 2223322221221 2223333332110 00000 00
Q ss_pred Ch-hhHHHHHHHHHhcCCeEEEEEcCCCchhccccccCCCCCCCCCcEEEEEeCChHHHhhcC---CceEEcCCCCHHHH
Q 002939 93 DV-PGRARKLYARLQKENKILVILDNIWEDLDLEKVGVPSGNDWRGCKVLLTARDRHVLGSIG---SKTFQIDVLNEEEA 168 (864)
Q Consensus 93 ~~-~~~~~~~~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~~~~~---~~~~~l~~L~~~e~ 168 (864)
.. ....+.+...+. ..+..+|+|+......+... ++ +.+-|..|+|...+..... ...+++++++.++.
T Consensus 113 ~l~~~~~e~l~~~~e-~~~~~~~l~~~~~~~~~~~~---l~---~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~ 185 (328)
T PRK00080 113 RLSPVVEEILYPAME-DFRLDIMIGKGPAARSIRLD---LP---PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEEL 185 (328)
T ss_pred hcchHHHHHHHHHHH-hcceeeeeccCccccceeec---CC---CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHH
Confidence 00 112222333332 45666777765544333211 11 1345666766543332211 36789999999999
Q ss_pred HHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHHHH
Q 002939 169 WTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTLAK 208 (864)
Q Consensus 169 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~~~ 208 (864)
.+++.+.++.. ...-.++....|++.|+|.|-.+..+..
T Consensus 186 ~~il~~~~~~~-~~~~~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 186 EKIVKRSARIL-GVEIDEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred HHHHHHHHHHc-CCCcCHHHHHHHHHHcCCCchHHHHHHH
Confidence 99999887432 2223345678999999999975554443
No 77
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.36 E-value=1.1e-06 Score=90.55 Aligned_cols=99 Identities=11% Similarity=0.078 Sum_probs=63.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC--ChHHHHHHHHHHhCCccccchhhhhccccccCCC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP--DIGKIQGELADQLGMKFSQGEIADQRGMKFSQES 92 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 92 (864)
+.+...|+|++|+||||||+++|+..... +|+.++||.+...+ .+.++++.+...+-....... .... ..
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~--~~~~-----~~ 239 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEP--AERH-----VQ 239 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCC--HHHH-----HH
Confidence 34688999999999999999999998875 89999999998887 677777777632211111000 0000 00
Q ss_pred ChhhHHHHHHHHHhcCCeEEEEEcCCCch
Q 002939 93 DVPGRARKLYARLQKENKILVILDNIWED 121 (864)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 121 (864)
......+........+++++|++|++...
T Consensus 240 ~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 240 VAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 00111222222223589999999999654
No 78
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=3.5e-05 Score=84.14 Aligned_cols=171 Identities=16% Similarity=0.127 Sum_probs=97.7
Q ss_pred HHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhccCCC-------------------eEEEEEccCCCChHHH
Q 002939 4 LKNVQNALLDPDI-SIIGMYGMGGVGKTTLVKEVARRAKKDMLFD-------------------EVVFAEVSETPDIGKI 63 (864)
Q Consensus 4 ~~~i~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~-------------------~~~~v~~~~~~~~~~~ 63 (864)
++.|...+.+++. ..+.++|++|+||||+|+.+++......... .++.++.+....+
T Consensus 23 ~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gi--- 99 (472)
T PRK14962 23 KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGI--- 99 (472)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCH---
Confidence 4455666666666 4589999999999999999998764321100 1111121111111
Q ss_pred HHHHHHHhCCccccchhhhhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCch--hccccccCCCCCCCCC
Q 002939 64 QGELADQLGMKFSQGEIADQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWED--LDLEKVGVPSGNDWRG 137 (864)
Q Consensus 64 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~g 137 (864)
+..+.+.+... .+++-++|+|+++.. ...+.+...+......
T Consensus 100 --------------------------------d~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~ 147 (472)
T PRK14962 100 --------------------------------DEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSH 147 (472)
T ss_pred --------------------------------HHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCc
Confidence 11222222221 246679999999755 2344454444333233
Q ss_pred cEEEEEeCC-hHHHhhcC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCC-cchHHHHHHHHh
Q 002939 138 CKVLLTARD-RHVLGSIG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGG-LPIAIVTLAKAL 210 (864)
Q Consensus 138 s~IivTtR~-~~v~~~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pla~~~~~~~l 210 (864)
..+|++|.+ ..+..... ...+++.+++.++....+...+.... ..-.++....|++.++| .+.++..+..+.
T Consensus 148 vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg-i~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 148 VVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG-IEIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444445444 33433322 67899999999999999888773211 11224456678887765 556766665543
No 79
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.32 E-value=4e-06 Score=77.54 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=42.0
Q ss_pred chHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC
Q 002939 2 STLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP 58 (864)
Q Consensus 2 ~~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~ 58 (864)
.+++.+...+.....+.+.|+|++|+||||+++.+++..... -..++++++....
T Consensus 5 ~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~ 59 (151)
T cd00009 5 EAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLL 59 (151)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhh
Confidence 356667777777667899999999999999999999987532 2447777766543
No 80
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.32 E-value=7.1e-05 Score=80.61 Aligned_cols=168 Identities=14% Similarity=0.155 Sum_probs=100.0
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhcc--------------------CCCeEEEEEccCCCChH
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDM--------------------LFDEVVFAEVSETPDIG 61 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~~~v~~~~~~~~~ 61 (864)
.++.+.+++...+.+ .+.++|++|+||||+|+.++....... +++. ++++.......
T Consensus 22 ~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~~~~~~~~- 99 (355)
T TIGR02397 22 IVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEIDAASNNGV- 99 (355)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEeeccccCCH-
Confidence 466777777766554 678899999999999999998864321 1111 22222111111
Q ss_pred HHHHHHHHHhCCccccchhhhhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCch--hccccccCCCCCCC
Q 002939 62 KIQGELADQLGMKFSQGEIADQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWED--LDLEKVGVPSGNDW 135 (864)
Q Consensus 62 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~ 135 (864)
+....+.+.+. .+++-++|+|+++.. ...+.+...+....
T Consensus 100 ----------------------------------~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~ 145 (355)
T TIGR02397 100 ----------------------------------DDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPP 145 (355)
T ss_pred ----------------------------------HHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCc
Confidence 11122222221 145568999998755 33445544443333
Q ss_pred CCcEEEEEeCChH-HHhhcC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHHH
Q 002939 136 RGCKVLLTARDRH-VLGSIG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTLA 207 (864)
Q Consensus 136 ~gs~IivTtR~~~-v~~~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~~ 207 (864)
....+|++|.+.. +..... ...+++.+++.++..+++..++..... .-.++.+..+++.++|.|..+....
T Consensus 146 ~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 146 EHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred cceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 4566667765543 333222 567899999999999999887732111 1124567788999999887554443
No 81
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=1.4e-05 Score=87.62 Aligned_cols=186 Identities=13% Similarity=0.103 Sum_probs=99.7
Q ss_pred HHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCe-EEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 4 LKNVQNALLDPDI-SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDE-VVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 4 ~~~i~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
++.+...+..++. ..+.++|+.|+||||+|+.+++.......... -.+..|... .....+..... ....++.
T Consensus 30 v~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i~~~~h--~Dv~eid 103 (507)
T PRK06645 30 VKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISFNNHNH--PDIIEID 103 (507)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHHhcCCC--CcEEEee
Confidence 4445555555554 58889999999999999999998654321100 000001100 00011111000 0000000
Q ss_pred hhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEe-CChHHHhhcC
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTA-RDRHVLGSIG 154 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTt-R~~~v~~~~~ 154 (864)
. ......+.++.+.+... .+++-++|+|+++.. ..++.+...+.......++|++| +...+.....
T Consensus 104 a-------as~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~ 176 (507)
T PRK06645 104 A-------ASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATII 176 (507)
T ss_pred c-------cCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHH
Confidence 0 00011112222222222 256779999999865 34666665555444455665544 4444444332
Q ss_pred --CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHH
Q 002939 155 --SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAI 203 (864)
Q Consensus 155 --~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~ 203 (864)
...+++++++.++..+++.+.+..... .-.++....|++.++|.+-.+
T Consensus 177 SRc~~~ef~~ls~~el~~~L~~i~~~egi-~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 177 SRCQRYDLRRLSFEEIFKLLEYITKQENL-KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hcceEEEccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 578999999999999999988832211 112345567999999977643
No 82
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.31 E-value=1.3e-07 Score=93.23 Aligned_cols=83 Identities=20% Similarity=0.200 Sum_probs=47.1
Q ss_pred cCCCCceEEEEeccccc-----cCCcccccCCCccEEEecCcc---cc-cc--------ccccccCcccEEeCCCCCCc-
Q 002939 361 MGMPKLKVLLFIRMRLL-----SLPSSIRLLTDLRTLCLDGCK---LE-DI--------RIIGELKELEILSLQGCDIE- 422 (864)
Q Consensus 361 ~~l~~Lr~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~---l~-~l--------~~~~~l~~L~~L~l~~~~i~- 422 (864)
..+..+..++|+||.+. .+...+.+.++|+..++++-- +. .+ +.+-..++|++||||.|-+-
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 34566666666666654 233345555666666666431 11 01 23344557777777777543
Q ss_pred ----cCchhhccccccceecccccc
Q 002939 423 ----HLPREIGQLTQLKLLDLSYCF 443 (864)
Q Consensus 423 ----~lp~~~~~l~~L~~L~l~~~~ 443 (864)
.+-.-+..++.|++|.|.+|+
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCC
Confidence 223345567778888888776
No 83
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.31 E-value=1.5e-08 Score=108.62 Aligned_cols=169 Identities=21% Similarity=0.178 Sum_probs=120.1
Q ss_pred hccceEEEeecCCccCCCCCC-cCCCceEEEecCCC--------CCCCCCCchhhcCCCCceEEEEeccccccCCccccc
Q 002939 315 LKKCSTISLHGNNISEIPQGW-ECPQLEFFYIFAPE--------DSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRL 385 (864)
Q Consensus 315 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~--------~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~ 385 (864)
+..+|+|-+.++++..+.... -...|+.|..+..- ...+.+.+.. .-..|.+.+++.|.+..+..++.-
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~SLql 185 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDESLQL 185 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHHHHH
Confidence 568999999988877643332 12345555443310 0011111111 123577788888888888888888
Q ss_pred CCCccEEEecCccccccccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecc
Q 002939 386 LTDLRTLCLDGCKLEDIRIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMA 465 (864)
Q Consensus 386 l~~L~~L~L~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 465 (864)
++.|+.|+|++|++++...+..+++|++|||++|.+..+|..-..-.+|+.|.+++|. ++.+-. +.+|.+|+.||++
T Consensus 186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~-l~tL~g--ie~LksL~~LDls 262 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA-LTTLRG--IENLKSLYGLDLS 262 (1096)
T ss_pred HHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccH-HHhhhh--HHhhhhhhccchh
Confidence 9999999999999999989999999999999999988887533333459999999996 887743 8899999999999
Q ss_pred cccccc-----ccccCCcchhhhcCCCC
Q 002939 466 TCCIKW-----EISNCSLLEEIVGKEGG 488 (864)
Q Consensus 466 ~~~~~~-----~~~~~~~L~~L~~~~~~ 488 (864)
.|-+.. .+..+..|..|.+.+|.
T Consensus 263 yNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 263 YNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 887654 24556667777777763
No 84
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=2.3e-05 Score=87.30 Aligned_cols=185 Identities=14% Similarity=0.091 Sum_probs=98.5
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.++.|.+++..+++. .+.++|+.|+||||+|+.++.......... +..|.... ..+.+.. +......++.
T Consensus 24 vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~~pCg~C~----sCr~i~~--g~~~DvlEid 94 (709)
T PRK08691 24 VVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---GEPCGVCQ----SCTQIDA--GRYVDLLEID 94 (709)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---CCCCcccH----HHHHHhc--cCccceEEEe
Confidence 456677778777654 679999999999999999998754332111 00111000 0000000 0000000000
Q ss_pred hhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCchhc--cccccCCCCCCCCCcEEEEEeCCh-HHHhhc-
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWEDLD--LEKVGVPSGNDWRGCKVLLTARDR-HVLGSI- 153 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~IivTtR~~-~v~~~~- 153 (864)
.. .....+.++.+.+... .+++-++|+|+++.... .+.+...+.......++|++|.+. .+....
T Consensus 95 aA-------s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIr 167 (709)
T PRK08691 95 AA-------SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVL 167 (709)
T ss_pred cc-------ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHH
Confidence 00 0001112222222211 25667999999976532 333443333323345677766544 222221
Q ss_pred C-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHH
Q 002939 154 G-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIV 204 (864)
Q Consensus 154 ~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~ 204 (864)
+ ...+++++++.++....+.+.+.... ..-.+.....|++.++|.+.-+.
T Consensus 168 SRC~~f~f~~Ls~eeI~~~L~~Il~kEg-i~id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 168 SRCLQFVLRNMTAQQVADHLAHVLDSEK-IAYEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred HHHhhhhcCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHhCCCHHHHH
Confidence 2 46788999999999999988773211 11224456789999999886443
No 85
>PRK09087 hypothetical protein; Validated
Probab=98.30 E-value=7.6e-06 Score=80.47 Aligned_cols=139 Identities=15% Similarity=0.086 Sum_probs=84.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
.+.+.|||++|+|||+|++.++.... +.|++.. .+..+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~----------------------------- 81 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSD----------------------------- 81 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchH-----------------------------
Confidence 46799999999999999998887642 2244432 01001
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCchh-ccccccCCCCC-CCCCcEEEEEeCCh---------HHHhhcC-CceEEcCCC
Q 002939 96 GRARKLYARLQKENKILVILDNIWEDL-DLEKVGVPSGN-DWRGCKVLLTARDR---------HVLGSIG-SKTFQIDVL 163 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~~~-~~~~l~~~~~~-~~~gs~IivTtR~~---------~v~~~~~-~~~~~l~~L 163 (864)
+...+. + -+|++||++... +-+.+...+.. ...|..||+|++.. ....++. ...++++++
T Consensus 82 -----~~~~~~-~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~p 153 (226)
T PRK09087 82 -----AANAAA-E--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEP 153 (226)
T ss_pred -----HHHhhh-c--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCC
Confidence 111121 1 278889996431 11112211111 12366899998742 2222333 578999999
Q ss_pred CHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHH
Q 002939 164 NEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVT 205 (864)
Q Consensus 164 ~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~ 205 (864)
++++-.+++++.+.... -.--++...-|++++.|..-++..
T Consensus 154 d~e~~~~iL~~~~~~~~-~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 154 DDALLSQVIFKLFADRQ-LYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred CHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999884321 122356677888888887766553
No 86
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.9e-05 Score=87.05 Aligned_cols=173 Identities=13% Similarity=0.086 Sum_probs=99.3
Q ss_pred HHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhccC-------------------CCeEEEEEccCCCChHHH
Q 002939 4 LKNVQNALLDPDI-SIIGMYGMGGVGKTTLVKEVARRAKKDML-------------------FDEVVFAEVSETPDIGKI 63 (864)
Q Consensus 4 ~~~i~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~-------------------f~~~~~v~~~~~~~~~~~ 63 (864)
++.+..++..+++ ..+.++|+.|+||||+|+.+++....... |..+++++......+.
T Consensus 25 v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd-- 102 (546)
T PRK14957 25 LNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVE-- 102 (546)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHH--
Confidence 4566777776655 45789999999999999999987543211 1111222211111111
Q ss_pred HHHHHHHhCCccccchhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEE
Q 002939 64 QGELADQLGMKFSQGEIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVL 141 (864)
Q Consensus 64 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~Ii 141 (864)
+..+..+.+...-..+++-++|+|+++... ..+.+...+.......++|
T Consensus 103 -----------------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fI 153 (546)
T PRK14957 103 -----------------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFI 153 (546)
T ss_pred -----------------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEE
Confidence 111222222211123567799999997553 3555555454443455555
Q ss_pred E-EeCChHHHhhcC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcch-HHHHHHH
Q 002939 142 L-TARDRHVLGSIG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPI-AIVTLAK 208 (864)
Q Consensus 142 v-TtR~~~v~~~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-a~~~~~~ 208 (864)
+ ||....+..... ...+++++++.++....+.+.+.... ....+.....|++.++|-+- |+..+-.
T Consensus 154 L~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 154 LATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-INSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4 544444443322 68899999999999888888662211 12224455678899999665 5544433
No 87
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=4.9e-05 Score=84.34 Aligned_cols=190 Identities=14% Similarity=0.089 Sum_probs=101.0
Q ss_pred HHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhh
Q 002939 4 LKNVQNALLDPD-ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIAD 82 (864)
Q Consensus 4 ~~~i~~~l~~~~-~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 82 (864)
++.|.+++..++ ...+.++|+.|+||||+|+.+++........+.. .+..-...+.+...- .....++.
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~-------pCg~C~sC~~i~~g~--hpDv~eId- 94 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE-------PCNTCEQCRKVTQGM--HVDVVEID- 94 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC-------CCcccHHHHHHhcCC--CCceEEEe-
Confidence 455666666665 3678889999999999999999886542111110 000001111111100 00000000
Q ss_pred hccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEeCC-hHHHhhcC-
Q 002939 83 QRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTARD-RHVLGSIG- 154 (864)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~-~~v~~~~~- 154 (864)
+. .....+.++.+.+.+. .+++-++|+|+++.. ...+.+...+........+|++|.. ..+.....
T Consensus 95 --~a----~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~S 168 (624)
T PRK14959 95 --GA----SNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVS 168 (624)
T ss_pred --cc----cccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHh
Confidence 00 0000111222222221 356679999999765 3345555444332234556665654 33433222
Q ss_pred -CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcc-hHHHHHHHHh
Q 002939 155 -SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLP-IAIVTLAKAL 210 (864)
Q Consensus 155 -~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-la~~~~~~~l 210 (864)
...+++++++.++....+...+.... ..-..+.+..|++.++|.+ .|+..+..++
T Consensus 169 Rcq~i~F~pLs~~eL~~~L~~il~~eg-i~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 169 RCQHFTFTRLSEAGLEAHLTKVLGREG-VDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhccccCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 57889999999999999888662211 1122456678889999865 5666665444
No 88
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=3.4e-05 Score=85.26 Aligned_cols=166 Identities=13% Similarity=0.123 Sum_probs=98.8
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccCCC-------------------eEEEEEccCCCChHH
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDMLFD-------------------EVVFAEVSETPDIGK 62 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~-------------------~~~~v~~~~~~~~~~ 62 (864)
.++.|.+++..+++. .+.++|+.|+||||+|+.++.........+ -++.++......+++
T Consensus 24 v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~ 103 (509)
T PRK14958 24 VVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVED 103 (509)
T ss_pred HHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHH
Confidence 456777888777665 468999999999999999998765432211 122222221111111
Q ss_pred HHHHHHHHhCCccccchhhhhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCch--hccccccCCCCCCCC
Q 002939 63 IQGELADQLGMKFSQGEIADQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWED--LDLEKVGVPSGNDWR 136 (864)
Q Consensus 63 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~ 136 (864)
.+.+.+... .++.-++|+|+++.. ...+.+...+.....
T Consensus 104 -----------------------------------iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~ 148 (509)
T PRK14958 104 -----------------------------------TRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPS 148 (509)
T ss_pred -----------------------------------HHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCC
Confidence 122222221 245668999999765 345555444444334
Q ss_pred CcEEEEEeCCh-HHHhhcC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHH
Q 002939 137 GCKVLLTARDR-HVLGSIG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIV 204 (864)
Q Consensus 137 gs~IivTtR~~-~v~~~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~ 204 (864)
..++|++|.+. .+..... ...+++++++.++....+.+.+..... ...+.....|++.++|-+..+.
T Consensus 149 ~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi-~~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 149 HVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV-EFENAALDLLARAANGSVRDAL 218 (509)
T ss_pred CeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHH
Confidence 56666665543 3332222 578899999999988887777632111 1123445678899999886443
No 89
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=7.6e-05 Score=83.19 Aligned_cols=187 Identities=14% Similarity=0.096 Sum_probs=98.3
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.++.+.+++..++.. .+.++|+.|+||||+|+.++........... -.+... .....+.. +.....-+
T Consensus 24 v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~---~pcg~C----~~C~~i~~--~~~~d~~e-- 92 (527)
T PRK14969 24 VVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTA---TPCGVC----SACLEIDS--GRFVDLIE-- 92 (527)
T ss_pred HHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCCCC----HHHHHHhc--CCCCceeE--
Confidence 355667777776665 4679999999999999999987643211000 000000 00000000 00000000
Q ss_pred hhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCCh-HHHhhcC
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARDR-HVLGSIG 154 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~-~v~~~~~ 154 (864)
..- ......+..+.+.+... .+++-++|+|+++... ..+.+...+........+|++|.+. .+.....
T Consensus 93 ----i~~-~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~ 167 (527)
T PRK14969 93 ----VDA-ASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVL 167 (527)
T ss_pred ----eec-cccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHH
Confidence 000 00001111222322222 2566799999998653 2444544444433455666655443 3332211
Q ss_pred --CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcch-HHHHH
Q 002939 155 --SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPI-AIVTL 206 (864)
Q Consensus 155 --~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-a~~~~ 206 (864)
...+++++++.++..+.+.+.+.... ....+.....|++.++|.+- |+..+
T Consensus 168 SRc~~~~f~~l~~~~i~~~L~~il~~eg-i~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 168 SRCLQFNLKQMPPPLIVSHLQHILEQEN-IPFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 57899999999999988888762211 11223455678999999776 44443
No 90
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.26 E-value=1.7e-05 Score=84.05 Aligned_cols=171 Identities=12% Similarity=0.089 Sum_probs=97.5
Q ss_pred hHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhh
Q 002939 3 TLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIAD 82 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 82 (864)
.++.+.+++.....+.+.++|+.|+||||+|+.+++.......-...+-++.+.......+ ++.+.++....+
T Consensus 25 ~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~-~~~i~~~~~~~~------ 97 (319)
T PRK00440 25 IVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVI-RNKIKEFARTAP------ 97 (319)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHH-HHHHHHHHhcCC------
Confidence 4667777777776777899999999999999999998654321111222222222221111 111111100000
Q ss_pred hccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCCh-HHHhhc-C-Cce
Q 002939 83 QRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARDR-HVLGSI-G-SKT 157 (864)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~-~v~~~~-~-~~~ 157 (864)
.....+-++|+|+++... ..+.+...+......+++|+++... .+.... . ...
T Consensus 98 ----------------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 98 ----------------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred ----------------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 001345689999987542 2333333333333345777776433 222211 1 467
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHH
Q 002939 158 FQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAI 203 (864)
Q Consensus 158 ~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~ 203 (864)
+++++++.++...++...+.... ..-.++....+++.++|.+..+
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~-~~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEG-IEITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 89999999999999888773211 1122456778899999987753
No 91
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=8.5e-05 Score=83.18 Aligned_cols=189 Identities=12% Similarity=0.094 Sum_probs=101.2
Q ss_pred hHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhccCC--CeEEEEEccCCCChHHHHHHHHHHhCCccccch
Q 002939 3 TLKNVQNALLDPDI-SIIGMYGMGGVGKTTLVKEVARRAKKDMLF--DEVVFAEVSETPDIGKIQGELADQLGMKFSQGE 79 (864)
Q Consensus 3 ~~~~i~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~ 79 (864)
.++.|.+++..++. ..+.++|+.|+||||+|+.+++........ .+...- ....-...+.|.. +......+
T Consensus 24 vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~----pCg~C~~C~~i~~--g~h~D~~e 97 (618)
T PRK14951 24 VVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT----PCGVCQACRDIDS--GRFVDYTE 97 (618)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC----CCCccHHHHHHHc--CCCCceee
Confidence 45667777777666 456899999999999999998876432110 110000 0111111111110 00000000
Q ss_pred hhhhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEeCC-hHHHhh
Q 002939 80 IADQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTARD-RHVLGS 152 (864)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~-~~v~~~ 152 (864)
... . .....+..+.+.+... .++.-++|+|+++.. ..++.+...+.......++|++|.+ ..+...
T Consensus 98 lda---a----s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 98 LDA---A----SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred cCc---c----cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHH
Confidence 000 0 0011112223333322 245568999999865 3455555555443445566665543 344332
Q ss_pred c-C-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHH
Q 002939 153 I-G-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVT 205 (864)
Q Consensus 153 ~-~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~ 205 (864)
. . ...+++++++.++..+.+.+.+.... ....++....|++.++|-+..+..
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~eg-i~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAEN-VPAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 2 2 68899999999999999988773211 112234567888999997764433
No 92
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=2.3e-05 Score=83.37 Aligned_cols=92 Identities=12% Similarity=-0.010 Sum_probs=59.1
Q ss_pred CCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCCh-HHHhhcC--CceEEcCCCCHHHHHHHHHHhhCCCCCC
Q 002939 108 ENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARDR-HVLGSIG--SKTFQIDVLNEEEAWTLFKKMTGDCAEK 182 (864)
Q Consensus 108 ~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~-~v~~~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~ 182 (864)
+++-++|+|+++... ..+.+...+.....+..+|++|.+. .+..... ...+.+.+++.++..+++.+..+
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~----- 190 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG----- 190 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----
Confidence 455688889997653 2344444443334456666666654 3333322 68899999999999988875432
Q ss_pred CcchHHHHHHHHhcCCcchHHHH
Q 002939 183 GELNFVAIDITKECGGLPIAIVT 205 (864)
Q Consensus 183 ~~~~~~~~~i~~~~~g~Pla~~~ 205 (864)
...+.+..+++.++|.|.....
T Consensus 191 -~~~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 191 -VDPETARRAARASQGHIGRARR 212 (394)
T ss_pred -CCHHHHHHHHHHcCCCHHHHHH
Confidence 1134566889999999975433
No 93
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=5.4e-05 Score=81.87 Aligned_cols=191 Identities=14% Similarity=0.108 Sum_probs=103.4
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE-ccCCCChHHHHHHHHHHhCCccccchh
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAE-VSETPDIGKIQGELADQLGMKFSQGEI 80 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~-~~~~~~~~~~~~~i~~~l~~~~~~~~~ 80 (864)
.++.|..++.+++++ .+.++|+.|+||||+|+.+++.......++..-|.. .......-...+.+.... +.+..+.
T Consensus 24 ~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~--~~n~~~~ 101 (397)
T PRK14955 24 ITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGT--SLNISEF 101 (397)
T ss_pred HHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCC--CCCeEee
Confidence 345666777777665 488999999999999999998875532221111111 001111101111111110 0000000
Q ss_pred hhhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEe-CChHHHhhc
Q 002939 81 ADQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTA-RDRHVLGSI 153 (864)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTt-R~~~v~~~~ 153 (864)
.+. .....+.+..+.+.+. .+++-++|+|+++... .++.+...+......+.+|++| +...+....
T Consensus 102 ---~~~----~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl 174 (397)
T PRK14955 102 ---DAA----SNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (397)
T ss_pred ---ccc----ccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHH
Confidence 000 0011122223333342 2466789999997553 4666655555444456666555 434444332
Q ss_pred C--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHH
Q 002939 154 G--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAI 203 (864)
Q Consensus 154 ~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~ 203 (864)
. ...+++++++.++..+.+...+.... ..-.++.+..+++.++|.+--+
T Consensus 175 ~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 175 ASRCQRFNFKRIPLEEIQQQLQGICEAEG-ISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 2 56789999999999988888763211 1122456778999999977644
No 94
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=9.8e-05 Score=85.88 Aligned_cols=186 Identities=16% Similarity=0.085 Sum_probs=99.2
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.++.|..++.++++. .+.++|+.|+||||+|+.+++........... .|.... -.+.|...-.......++.
T Consensus 23 v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C~----sC~~~~~g~~~~~dv~eid 95 (824)
T PRK07764 23 VTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGECD----SCVALAPGGPGSLDVTEID 95 (824)
T ss_pred HHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCcccH----HHHHHHcCCCCCCcEEEec
Confidence 356677777777765 47899999999999999999887543211000 000000 0011110000000000000
Q ss_pred hhccccccCCCChhhHHHHHHHHH----hcCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEeCC-hHHHhhcC
Q 002939 82 DQRGMKFSQESDVPGRARKLYARL----QKENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTARD-RHVLGSIG 154 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~-~~v~~~~~ 154 (864)
.. .....+.++.+.+.+ ..++.-++|||+++.. ...+.|+..+..-...+.+|++|.+ ..+...+.
T Consensus 96 ---aa----s~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIr 168 (824)
T PRK07764 96 ---AA----SHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIR 168 (824)
T ss_pred ---cc----ccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHH
Confidence 00 000011112222222 1245568999999765 3355555555544445566655543 34444333
Q ss_pred --CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHH
Q 002939 155 --SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAI 203 (864)
Q Consensus 155 --~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~ 203 (864)
...|++..++.++..+++.+.+.... ....+.....+++.++|.+..+
T Consensus 169 SRc~~v~F~~l~~~~l~~~L~~il~~EG-v~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 169 SRTHHYPFRLVPPEVMRGYLERICAQEG-VPVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hheeEEEeeCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 68899999999999988888762211 1122344567889999977533
No 95
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=7.5e-05 Score=82.45 Aligned_cols=189 Identities=13% Similarity=0.105 Sum_probs=99.4
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.++.+.+++..++++ .+.++|+.|+||||+|+.+++......+.+. . ....-...+.+........ .+..
T Consensus 24 iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~------~-~Cg~C~sCr~i~~~~h~Di--ieId 94 (605)
T PRK05896 24 IKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDG------D-CCNSCSVCESINTNQSVDI--VELD 94 (605)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------C-CCcccHHHHHHHcCCCCce--EEec
Confidence 345666777665554 6889999999999999999988754322111 0 0111111111111110000 0000
Q ss_pred hhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEeCC-hHHHhhcC
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTARD-RHVLGSIG 154 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~-~~v~~~~~ 154 (864)
+. .....+..+.+.+... .+++-++|+|+++.. ..++.+...+........+|++|.. ..+.....
T Consensus 95 ---aa----s~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~ 167 (605)
T PRK05896 95 ---AA----SNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTII 167 (605)
T ss_pred ---cc----cccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHH
Confidence 00 0001111222222222 134447999999754 3455555444433334555555543 33433222
Q ss_pred --CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcch-HHHHHHH
Q 002939 155 --SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPI-AIVTLAK 208 (864)
Q Consensus 155 --~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-a~~~~~~ 208 (864)
...+++.+++.++....+...+.... ..-..+.+..+++.++|.+. |+..+-.
T Consensus 168 SRcq~ieF~~Ls~~eL~~~L~~il~keg-i~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 168 SRCQRYNFKKLNNSELQELLKSIAKKEK-IKIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hhhhhcccCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 67899999999999999888763211 11124456788999999665 4444443
No 96
>PLN03150 hypothetical protein; Provisional
Probab=98.22 E-value=2e-06 Score=98.59 Aligned_cols=103 Identities=23% Similarity=0.340 Sum_probs=76.4
Q ss_pred CceEEEEeccccc-cCCcccccCCCccEEEecCccccc-c-ccccccCcccEEeCCCCCCc-cCchhhccccccceeccc
Q 002939 365 KLKVLLFIRMRLL-SLPSSIRLLTDLRTLCLDGCKLED-I-RIIGELKELEILSLQGCDIE-HLPREIGQLTQLKLLDLS 440 (864)
Q Consensus 365 ~Lr~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~l~~-l-~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~ 440 (864)
.++.|+|+++.+. .+|..++++++|+.|+|++|.+.+ + ..++.+++|++|+|++|++. .+|..++.+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677888888877 668888888888888888888874 3 45888888888888888887 678888888888888888
Q ss_pred ccccccccChhhhhc-Ccccceeeccccc
Q 002939 441 YCFELKVIAPNVLSN-LSQLEELYMATCC 468 (864)
Q Consensus 441 ~~~~l~~~~~~~l~~-l~~L~~L~l~~~~ 468 (864)
+|.....+|.. +.. +.++..+++.+|.
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCc
Confidence 88733455543 444 3455666666553
No 97
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.22 E-value=1.7e-05 Score=86.49 Aligned_cols=163 Identities=14% Similarity=0.091 Sum_probs=102.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPG 96 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (864)
..+.|+|..|+|||+|++++++.......-..++|+++ .++...+...++.. .+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~--------------------~~ 195 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKT--------------------HK 195 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHh--------------------hh
Confidence 56899999999999999999997654333345677664 34556666655310 01
Q ss_pred HHHHHHHHHhcCCeEEEEEcCCCchh---cc-ccccCCCCC-CCCCcEEEEEeCCh-HHH--------hhcC-CceEEcC
Q 002939 97 RARKLYARLQKENKILVILDNIWEDL---DL-EKVGVPSGN-DWRGCKVLLTARDR-HVL--------GSIG-SKTFQID 161 (864)
Q Consensus 97 ~~~~~~~~l~~~~~~LlvlDdv~~~~---~~-~~l~~~~~~-~~~gs~IivTtR~~-~v~--------~~~~-~~~~~l~ 161 (864)
..+.+.+.+. +.-+||+||+.... .+ +.+...+.. ...|..||+|+... ... .++. .-+++++
T Consensus 196 ~~~~~~~~~~--~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~ 273 (450)
T PRK14087 196 EIEQFKNEIC--QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQ 273 (450)
T ss_pred HHHHHHHHhc--cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccC
Confidence 2334444443 44589999996442 11 222221211 12355788887643 222 2233 5678899
Q ss_pred CCCHHHHHHHHHHhhCCCCC-CCcchHHHHHHHHhcCCcchHHHHHH
Q 002939 162 VLNEEEAWTLFKKMTGDCAE-KGELNFVAIDITKECGGLPIAIVTLA 207 (864)
Q Consensus 162 ~L~~~e~~~l~~~~~~~~~~-~~~~~~~~~~i~~~~~g~Pla~~~~~ 207 (864)
+++.++..+++.+.+....- ..-.++...-|++.+.|.|-.+.-+.
T Consensus 274 ~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 274 KLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred CcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 99999999999998833221 12336778889999999998775444
No 98
>PRK04195 replication factor C large subunit; Provisional
Probab=98.21 E-value=4.4e-05 Score=84.94 Aligned_cols=165 Identities=16% Similarity=0.149 Sum_probs=97.6
Q ss_pred hHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccc
Q 002939 3 TLKNVQNALLD----PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQG 78 (864)
Q Consensus 3 ~~~~i~~~l~~----~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~ 78 (864)
.++++.+|+.. ...+.+.|+|++|+||||+|+.++++.. ++ ++-++++...+...+ ..++.......
T Consensus 22 ~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~~i-~~~i~~~~~~~--- 92 (482)
T PRK04195 22 AKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTADVI-ERVAGEAATSG--- 92 (482)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHHHH-HHHHHHhhccC---
Confidence 45667777753 2268999999999999999999999874 22 444555543333222 22222211000
Q ss_pred hhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchhc------cccccCCCCCCCCCcEEEEEeCChH-HHh
Q 002939 79 EIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDLD------LEKVGVPSGNDWRGCKVLLTARDRH-VLG 151 (864)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~------~~~l~~~~~~~~~gs~IivTtR~~~-v~~ 151 (864)
.+...++-+||+|+++.... +..+...+.. .+..||+|+.+.. ...
T Consensus 93 -------------------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 93 -------------------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSL 145 (482)
T ss_pred -------------------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccch
Confidence 01112677999999976532 3333322221 2345666664432 111
Q ss_pred -hcC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHH
Q 002939 152 -SIG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIV 204 (864)
Q Consensus 152 -~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~ 204 (864)
... ...+++.+++.++....+...+....- .-..+....|++.++|-.-.+.
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi-~i~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRICRKEGI-ECDDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 112 578899999999999988887722111 1224567789999988766443
No 99
>PRK05642 DNA replication initiation factor; Validated
Probab=98.20 E-value=1.6e-05 Score=78.98 Aligned_cols=146 Identities=21% Similarity=0.217 Sum_probs=88.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPG 96 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (864)
+.+.|+|..|+|||.|++.+++....+ -..++|++..+ +...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~------------------------------ 87 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR------------------------------ 87 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh------------------------------
Confidence 678999999999999999999876543 24577877532 1100
Q ss_pred HHHHHHHHHhcCCeEEEEEcCCCch---hcccc-ccCCCCC-CCCCcEEEEEeCChHH-Hh--------hcC-CceEEcC
Q 002939 97 RARKLYARLQKENKILVILDNIWED---LDLEK-VGVPSGN-DWRGCKVLLTARDRHV-LG--------SIG-SKTFQID 161 (864)
Q Consensus 97 ~~~~~~~~l~~~~~~LlvlDdv~~~---~~~~~-l~~~~~~-~~~gs~IivTtR~~~v-~~--------~~~-~~~~~l~ 161 (864)
...+.+.+. +- =+||+||+... .+|+. +...+.. ..+|.+||+|++...- .. ++. ..+++++
T Consensus 88 -~~~~~~~~~-~~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~ 164 (234)
T PRK05642 88 -GPELLDNLE-QY-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMR 164 (234)
T ss_pred -hHHHHHhhh-hC-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecC
Confidence 012333343 22 26889999633 23433 2222211 1236689998875321 11 222 4678999
Q ss_pred CCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHH
Q 002939 162 VLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIV 204 (864)
Q Consensus 162 ~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~ 204 (864)
++++++..++++.++.... -.-.++...-|++++.|-.-.+.
T Consensus 165 ~~~~e~~~~il~~ka~~~~-~~l~~ev~~~L~~~~~~d~r~l~ 206 (234)
T PRK05642 165 GLSDEDKLRALQLRASRRG-LHLTDEVGHFILTRGTRSMSALF 206 (234)
T ss_pred CCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCHHHHH
Confidence 9999999999986662211 11225667778888877655443
No 100
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=4.3e-05 Score=82.97 Aligned_cols=164 Identities=12% Similarity=0.107 Sum_probs=98.9
Q ss_pred HHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhcc-------------------CCCeEEEEEccCCCChHHH
Q 002939 4 LKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDM-------------------LFDEVVFAEVSETPDIGKI 63 (864)
Q Consensus 4 ~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~~v~~~~~~~~~~~ 63 (864)
++.+.+.+..+++. .+.++|+.|+||||+|+.++....... .+.-++.++.++...+.+
T Consensus 22 v~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vdd- 100 (491)
T PRK14964 22 VRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDD- 100 (491)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHH-
Confidence 45555666666665 799999999999999999987543211 111123333332222222
Q ss_pred HHHHHHHhCCccccchhhhhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCch--hccccccCCCCCCCCC
Q 002939 64 QGELADQLGMKFSQGEIADQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWED--LDLEKVGVPSGNDWRG 137 (864)
Q Consensus 64 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~g 137 (864)
.+.+.+... .+++-++|+|+++.. ...+.+...+......
T Consensus 101 ----------------------------------IR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~ 146 (491)
T PRK14964 101 ----------------------------------IKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPH 146 (491)
T ss_pred ----------------------------------HHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCC
Confidence 112222221 245668999999755 3355555555444446
Q ss_pred cEEEEEeCC-hHHHhhcC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHH
Q 002939 138 CKVLLTARD-RHVLGSIG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAI 203 (864)
Q Consensus 138 s~IivTtR~-~~v~~~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~ 203 (864)
.++|++|.+ ..+..... ...+++++++.++..+.+.+.+.... ..-.++....|++.++|.+..+
T Consensus 147 v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Eg-i~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 147 VKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKEN-IEHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred eEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 667766644 34443322 68899999999999999988773211 1122445668899999987643
No 101
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.17 E-value=1.9e-06 Score=59.30 Aligned_cols=42 Identities=26% Similarity=0.372 Sum_probs=24.7
Q ss_pred CCceEEEEeccccccCCcccccCCCccEEEecCccccccccc
Q 002939 364 PKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDIRII 405 (864)
Q Consensus 364 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l~~~ 405 (864)
++|++|++++|.++.+|..+++|++|++|++++|.+++++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcCC
Confidence 356666666666666665566666666666666666555433
No 102
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.17 E-value=5.5e-07 Score=98.52 Aligned_cols=105 Identities=30% Similarity=0.359 Sum_probs=48.4
Q ss_pred CCCCceEEEEeccccccCCcccccCCCccEEEecCccccccccccccCcccEEeCCCCCCccCchhhccccccceecccc
Q 002939 362 GMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDIRIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSY 441 (864)
Q Consensus 362 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~ 441 (864)
.+++|..|++.+|.|..+...+..+++|++|++++|.|+.+..+..++.|+.|++++|.|..++ .+..+++|+.+++++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSY 171 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCCc
Confidence 3444455555555544444334444555555555555555544444444555555555444433 223344555555555
Q ss_pred cccccccCh-hhhhcCcccceeecccccc
Q 002939 442 CFELKVIAP-NVLSNLSQLEELYMATCCI 469 (864)
Q Consensus 442 ~~~l~~~~~-~~l~~l~~L~~L~l~~~~~ 469 (864)
|. +..+.. . ...+.+|+.+.+.+|.+
T Consensus 172 n~-i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 172 NR-IVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred ch-hhhhhhhh-hhhccchHHHhccCCch
Confidence 43 333322 1 23444444454444443
No 103
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.17 E-value=6.3e-05 Score=74.94 Aligned_cols=185 Identities=16% Similarity=0.150 Sum_probs=111.8
Q ss_pred HHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCC----eEEEEEccCCCChHHHHHHHHHHhCCcccc
Q 002939 5 KNVQNALLD---PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFD----EVVFAEVSETPDIGKIQGELADQLGMKFSQ 77 (864)
Q Consensus 5 ~~i~~~l~~---~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~----~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~ 77 (864)
+++.+.+.. .+++-+.|+|.+|.|||++++++.........-+ -|+.|.+....+...++..|+.+++.+...
T Consensus 47 ~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~ 126 (302)
T PF05621_consen 47 DRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP 126 (302)
T ss_pred HHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC
Confidence 344444443 4568899999999999999999998754321112 377888899999999999999999987652
Q ss_pred chhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCch---------hccccccCCCCCCCCCcEEEEEeCChH
Q 002939 78 GEIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWED---------LDLEKVGVPSGNDWRGCKVLLTARDRH 148 (864)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~---------~~~~~l~~~~~~~~~gs~IivTtR~~~ 148 (864)
..........+.+.++.-+--+||+|++.+. +-.+.+ ..+.....=+-|.|-|+..-
T Consensus 127 -------------~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L-K~L~NeL~ipiV~vGt~~A~ 192 (302)
T PF05621_consen 127 -------------RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNAL-KFLGNELQIPIVGVGTREAY 192 (302)
T ss_pred -------------CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHH-HHHhhccCCCeEEeccHHHH
Confidence 2333333444455565556679999998654 112222 22222222345666665432
Q ss_pred HHhhcC------CceEEcCCCCHH-HHHHHHHHhh----CCCCCCCcchHHHHHHHHhcCCcchHH
Q 002939 149 VLGSIG------SKTFQIDVLNEE-EAWTLFKKMT----GDCAEKGELNFVAIDITKECGGLPIAI 203 (864)
Q Consensus 149 v~~~~~------~~~~~l~~L~~~-e~~~l~~~~~----~~~~~~~~~~~~~~~i~~~~~g~Pla~ 203 (864)
-+-..+ ...+.++....+ +...|+.... -.....-...+.+..|...++|+.=.+
T Consensus 193 ~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 193 RALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 221111 345566655533 4455544433 111222334678899999999986544
No 104
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.15 E-value=2.2e-05 Score=89.95 Aligned_cols=156 Identities=17% Similarity=0.241 Sum_probs=91.4
Q ss_pred HHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhcc
Q 002939 6 NVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRG 85 (864)
Q Consensus 6 ~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 85 (864)
.+...+..++.+.+.++|++|+||||+|+.+++..... | +.+++.. ..+.+
T Consensus 42 ~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~--f---~~lna~~-~~i~d----------------------- 92 (725)
T PRK13341 42 LLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAH--F---SSLNAVL-AGVKD----------------------- 92 (725)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCc--c---eeehhhh-hhhHH-----------------------
Confidence 45566777777889999999999999999999875432 3 1122110 00100
Q ss_pred ccccCCCChhhHHHHHHHHHh-cCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEE--eCChH--HHhhc-C-Cc
Q 002939 86 MKFSQESDVPGRARKLYARLQ-KENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLT--ARDRH--VLGSI-G-SK 156 (864)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~-~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivT--tR~~~--v~~~~-~-~~ 156 (864)
..+......+.+. .+++.++|+||++.. .+.+.+...+. .|..++++ |.+.. +.... . ..
T Consensus 93 --------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~ 161 (725)
T PRK13341 93 --------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSR 161 (725)
T ss_pred --------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhcccc
Confidence 1111122222221 146789999999754 34555543332 25555553 33321 22211 1 56
Q ss_pred eEEcCCCCHHHHHHHHHHhhCC------CCCCCcchHHHHHHHHhcCCcch
Q 002939 157 TFQIDVLNEEEAWTLFKKMTGD------CAEKGELNFVAIDITKECGGLPI 201 (864)
Q Consensus 157 ~~~l~~L~~~e~~~l~~~~~~~------~~~~~~~~~~~~~i~~~~~g~Pl 201 (864)
.+++++++.++...++.+.+.+ .....-.++....|++.+.|..-
T Consensus 162 v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 162 LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 8999999999999999887631 11122234566788888888654
No 105
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=0.00038 Score=77.77 Aligned_cols=193 Identities=15% Similarity=0.087 Sum_probs=102.3
Q ss_pred hHHHHHHHhcCCCccE-EEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPDISI-IGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~v-i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.++.|.+++..+++.- +.++|+.|+||||+|+.++.........+. -.|..- ...+.+...-+.....-++
T Consensus 21 i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~---~pCg~C----~~C~~i~~~~~~~~dviei- 92 (584)
T PRK14952 21 VTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTA---TPCGVC----ESCVALAPNGPGSIDVVEL- 92 (584)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC---Cccccc----HHHHHhhcccCCCceEEEe-
Confidence 4566777787777665 689999999999999999987654221110 011110 0111111100000000000
Q ss_pred hhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEe-CChHHHhhcC
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTA-RDRHVLGSIG 154 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTt-R~~~v~~~~~ 154 (864)
.+. .....+..+.+.+... .+++-++|+|+++.. ...+.+...+........+|++| ....+.....
T Consensus 93 --daa----s~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~ 166 (584)
T PRK14952 93 --DAA----SHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIR 166 (584)
T ss_pred --ccc----cccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHH
Confidence 000 0001122222322222 246669999999754 33555544444433355555555 4444443322
Q ss_pred --CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcch-HHHHHHHHh
Q 002939 155 --SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPI-AIVTLAKAL 210 (864)
Q Consensus 155 --~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-a~~~~~~~l 210 (864)
...+++..++.++..+++.+.+.... ....++....|++.++|-+- ++..+-.++
T Consensus 167 SRc~~~~F~~l~~~~i~~~L~~i~~~eg-i~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 167 SRTHHYPFRLLPPRTMRALIARICEQEG-VVVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred HhceEEEeeCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 68899999999999988888763211 11223455678889999775 444444433
No 106
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=7.1e-05 Score=79.07 Aligned_cols=198 Identities=13% Similarity=0.036 Sum_probs=102.8
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEE-E--EEccCCCChHHHHHHHHHHhCCccc-c
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVV-F--AEVSETPDIGKIQGELADQLGMKFS-Q 77 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~-~--v~~~~~~~~~~~~~~i~~~l~~~~~-~ 77 (864)
.++.+.+.+..+++. .+.++|+.|+||+|+|..+++..-.+....... - .........-...+.+...-.-+.. .
T Consensus 27 ~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i 106 (365)
T PRK07471 27 AEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTL 106 (365)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEE
Confidence 345666777777665 588999999999999999998875432211000 0 0000000000111111111000000 0
Q ss_pred chhhhhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCChH-HH
Q 002939 78 GEIADQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARDRH-VL 150 (864)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~~-v~ 150 (864)
....+..+......-. .+.++.+.+.+. .+++.++|+|+++..+ ..+.+...+.....+..+|++|.+.. +.
T Consensus 107 ~~~~~~~~~~~~~~I~-VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~ll 185 (365)
T PRK07471 107 ERSWNEKGKRLRTVIT-VDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLL 185 (365)
T ss_pred eccccccccccccccc-HHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhch
Confidence 0000000000000011 122334444443 2566799999997553 34445444443334556777776653 33
Q ss_pred hhcC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHH
Q 002939 151 GSIG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTL 206 (864)
Q Consensus 151 ~~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~ 206 (864)
.... ...+.+.+++.++..+++.+...... +.....+++.++|.|.....+
T Consensus 186 pti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-----~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 186 PTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-----DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred HHhhccceEEECCCCCHHHHHHHHHHhcccCC-----HHHHHHHHHHcCCCHHHHHHH
Confidence 3222 68899999999999999988643211 112257899999999855444
No 107
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=7.2e-05 Score=78.52 Aligned_cols=196 Identities=13% Similarity=0.115 Sum_probs=102.4
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccC--CCeEEEEEccCCCChHHHHHHHHHHhCCccc-c-
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDML--FDEVVFAEVSETPDIGKIQGELADQLGMKFS-Q- 77 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~-~- 77 (864)
..+.+...+...+.. .+.|+|+.|+||||+|..+++..-.... +... .......-....+.+...-..+.. .
T Consensus 31 a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~hPdl~~l~ 107 (351)
T PRK09112 31 AEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGAHPNLLHIT 107 (351)
T ss_pred HHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCCCCCEEEee
Confidence 345666666666543 6889999999999999999998754211 1111 000011111122222222110000 0
Q ss_pred chhhhhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCchh--ccccccCCCCCCCCCcE-EEEEeCChHHH
Q 002939 78 GEIADQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWEDL--DLEKVGVPSGNDWRGCK-VLLTARDRHVL 150 (864)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~-IivTtR~~~v~ 150 (864)
.......+ +....-. .+.+..+.+.+. .+++-++|+|+++... ..+.+...+.....+.. |++|++...+.
T Consensus 108 ~~~~~~~~-~~~~~I~-vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~ll 185 (351)
T PRK09112 108 RPFDEKTG-KFKTAIT-VDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLL 185 (351)
T ss_pred cccccccc-cccccCC-HHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhcc
Confidence 00000000 0000111 122334444444 3567799999997653 23344333332222344 44554443343
Q ss_pred hhcC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHH
Q 002939 151 GSIG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTL 206 (864)
Q Consensus 151 ~~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~ 206 (864)
.... ...+++.+++.++..+++.+.... .. ..++....+++.++|.|.....+
T Consensus 186 ptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~~--~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 186 PTIRSRCQPISLKPLDDDELKKALSHLGSS-QG--SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred HHHHhhccEEEecCCCHHHHHHHHHHhhcc-cC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3222 678999999999999999885421 11 22445678999999999855433
No 108
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.12 E-value=1.2e-05 Score=83.35 Aligned_cols=99 Identities=10% Similarity=0.076 Sum_probs=65.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC--CChHHHHHHHHHHhCCccccchhhhhccccccCCC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET--PDIGKIQGELADQLGMKFSQGEIADQRGMKFSQES 92 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 92 (864)
+...++|+|++|+|||||++.+++....+ +|+..+|+.+... .++.++++.+...+-....... ......
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p-------~~~~~~ 238 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEP-------ASRHVQ 238 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCC-------hHHHHH
Confidence 34689999999999999999999998765 7999999998865 6888888888543322111000 000000
Q ss_pred ChhhHHHHHHHHHhcCCeEEEEEcCCCch
Q 002939 93 DVPGRARKLYARLQKENKILVILDNIWED 121 (864)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 121 (864)
......+...+...++++++|++|++...
T Consensus 239 va~~v~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 239 VAEMVIEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEChhHH
Confidence 01112222333334689999999999654
No 109
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.11 E-value=3.6e-06 Score=86.03 Aligned_cols=178 Identities=25% Similarity=0.311 Sum_probs=121.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCC-CeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLF-DEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESD 93 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 93 (864)
..+.+.++|.|||||||++-++.. .... | +.+.++++....+...+.-.+...++.... +
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~--~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~----------------~ 73 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASE--YADGVAFVDLAPITDPALVFPTLAGALGLHVQ----------------P 73 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhhh--cccceeeeeccccCchhHhHHHHHhhcccccc----------------c
Confidence 357999999999999999999999 4443 5 668888888888888887777777765433 1
Q ss_pred hhhHHHHHHHHHhcCCeEEEEEcCCCchh-ccccccCCCCCCCCCcEEEEEeCChHHHhhcCCceEEcCCCCHH-HHHHH
Q 002939 94 VPGRARKLYARLQKENKILVILDNIWEDL-DLEKVGVPSGNDWRGCKVLLTARDRHVLGSIGSKTFQIDVLNEE-EAWTL 171 (864)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~LlvlDdv~~~~-~~~~l~~~~~~~~~gs~IivTtR~~~v~~~~~~~~~~l~~L~~~-e~~~l 171 (864)
.......+...+. .+|.++|+||....- +-..+...+..++..-.|+.|+|.... ..+...+.++.++.- ++.++
T Consensus 74 g~~~~~~~~~~~~-~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l--~~ge~~~~~~~L~~~d~a~~l 150 (414)
T COG3903 74 GDSAVDTLVRRIG-DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL--VAGEVHRRVPSLSLFDEAIEL 150 (414)
T ss_pred chHHHHHHHHHHh-hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc--ccccccccCCccccCCchhHH
Confidence 1122334444554 789999999986552 222233333334445578888886532 122466677777755 68888
Q ss_pred HHHhhC----CCCCCCcchHHHHHHHHhcCCcchHHHHHHHHhccCC
Q 002939 172 FKKMTG----DCAEKGELNFVAIDITKECGGLPIAIVTLAKALRNKS 214 (864)
Q Consensus 172 ~~~~~~----~~~~~~~~~~~~~~i~~~~~g~Pla~~~~~~~l~~~~ 214 (864)
|...+. ...-...-.....+|.++.+|.|+++...++..+...
T Consensus 151 f~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~ 197 (414)
T COG3903 151 FVCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS 197 (414)
T ss_pred HHHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC
Confidence 877661 1111222345667999999999999999998888763
No 110
>PLN03150 hypothetical protein; Provisional
Probab=98.10 E-value=6e-06 Score=94.66 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=89.2
Q ss_pred CceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccc-cCCcccccCCCccEEEecCcccccc--ccccccCcccEEe
Q 002939 339 QLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLL-SLPSSIRLLTDLRTLCLDGCKLEDI--RIIGELKELEILS 415 (864)
Q Consensus 339 ~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~l~~l--~~~~~l~~L~~L~ 415 (864)
.++.|++..+.. ...+|.. +..+++|+.|+|++|.+. .+|..++++++|+.|+|++|.+... ..++++++|++|+
T Consensus 419 ~v~~L~L~~n~L-~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGL-RGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCc-cccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 367788877443 3456665 488999999999999998 7899999999999999999999864 5699999999999
Q ss_pred CCCCCCc-cCchhhccc-cccceeccccccccccc
Q 002939 416 LQGCDIE-HLPREIGQL-TQLKLLDLSYCFELKVI 448 (864)
Q Consensus 416 l~~~~i~-~lp~~~~~l-~~L~~L~l~~~~~l~~~ 448 (864)
|++|++. .+|..++.+ .++..+++.+|..+...
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCccccCC
Confidence 9999988 889888764 57788999888755544
No 111
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.10 E-value=1.1e-06 Score=96.31 Aligned_cols=169 Identities=23% Similarity=0.259 Sum_probs=111.4
Q ss_pred hccceEEEeecCCccCCCC-CCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEE
Q 002939 315 LKKCSTISLHGNNISEIPQ-GWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLC 393 (864)
Q Consensus 315 ~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~ 393 (864)
+..+..++++.|.+..+-. .-.+.++..|++..+.... +... +..+++|++|++++|.|.++.. +..+..|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~--i~~~-l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK--IENL-LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhh--cccc-hhhhhcchheeccccccccccc-hhhccchhhhe
Confidence 3455556677776666333 3366788888887755442 3221 3568888888888888887753 66777788888
Q ss_pred ecCccccccccccccCcccEEeCCCCCCccCchh-hccccccceecccccccccccChhhhhcCcccceeecccccccc-
Q 002939 394 LDGCKLEDIRIIGELKELEILSLQGCDIEHLPRE-IGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW- 471 (864)
Q Consensus 394 L~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~- 471 (864)
+.+|.++.+..+..++.|+.+++++|.+..+... ...+.+|+.+.+.+|. +..+.. +..+..+..+++..|.+..
T Consensus 147 l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 147 LSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred eccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhcccccceec
Confidence 8888888888888888888888888888877643 5678888888888886 554432 4445555555666665432
Q ss_pred -ccccCCc--chhhhcCCCCcc
Q 002939 472 -EISNCSL--LEEIVGKEGGVE 490 (864)
Q Consensus 472 -~~~~~~~--L~~L~~~~~~~~ 490 (864)
.+..+.. |+.+.+.++++.
T Consensus 224 ~~l~~~~~~~L~~l~l~~n~i~ 245 (414)
T KOG0531|consen 224 EGLNELVMLHLRELYLSGNRIS 245 (414)
T ss_pred cCcccchhHHHHHHhcccCccc
Confidence 2222222 555555555443
No 112
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=0.00029 Score=79.63 Aligned_cols=184 Identities=16% Similarity=0.111 Sum_probs=98.4
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.++.+..++..+++. .+.++|+.|+||||+|+.++...-.....+ .+-.|.. .... .+.....-+.
T Consensus 26 ~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~~pC~~-------C~~~---~~~~~Dviei- 92 (725)
T PRK07133 26 IVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LLEPCQE-------CIEN---VNNSLDIIEM- 92 (725)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CCCchhH-------HHHh---hcCCCcEEEE-
Confidence 356677777776654 567899999999999999988754321100 0000000 0000 1110000000
Q ss_pred hhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEE-EeCChHHHhhcC
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLL-TARDRHVLGSIG 154 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv-TtR~~~v~~~~~ 154 (864)
+ +. .....+.++.+.+... .+++-++|+|+++.. ..++.+...+........+|+ |++...+.....
T Consensus 93 d--aa----sn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~ 166 (725)
T PRK07133 93 D--AA----SNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTIL 166 (725)
T ss_pred e--cc----ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHH
Confidence 0 00 0001122233333332 256679999999754 345555544443333445454 444444443222
Q ss_pred --CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcch-HHHHH
Q 002939 155 --SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPI-AIVTL 206 (864)
Q Consensus 155 --~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-a~~~~ 206 (864)
...+++.+++.++..+.+...+.... .....+.+..+++.++|-+. |+..+
T Consensus 167 SRcq~ieF~~L~~eeI~~~L~~il~keg-I~id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 167 SRVQRFNFRRISEDEIVSRLEFILEKEN-ISYEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred hhceeEEccCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 57899999999999998888662211 11123456688999999765 44433
No 113
>PF14516 AAA_35: AAA-like domain
Probab=98.09 E-value=9.2e-05 Score=77.78 Aligned_cols=198 Identities=12% Similarity=0.197 Sum_probs=115.2
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC-----CChHHHHHHHHHHhCCccccch
Q 002939 5 KNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET-----PDIGKIQGELADQLGMKFSQGE 79 (864)
Q Consensus 5 ~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-----~~~~~~~~~i~~~l~~~~~~~~ 79 (864)
+++.+.+.+. ...+.|.|+-.+|||+|..++.+..... -..++++++... .+....++.++..+........
T Consensus 21 ~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~--~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~ 97 (331)
T PF14516_consen 21 QECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ--GYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDE 97 (331)
T ss_pred HHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC--CCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCCh
Confidence 4455666553 3799999999999999999999988765 235678887652 3466666666665544332211
Q ss_pred -hhhhccccccCCCChhhHHHHHHHHHh-c-CCeEEEEEcCCCchhccc----cccC---------CCCCCCCCcEEEE-
Q 002939 80 -IADQRGMKFSQESDVPGRARKLYARLQ-K-ENKILVILDNIWEDLDLE----KVGV---------PSGNDWRGCKVLL- 142 (864)
Q Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~LlvlDdv~~~~~~~----~l~~---------~~~~~~~gs~Iiv- 142 (864)
..+.+.... .........+.+.+. + .++.+|++|+++..-+.. .+.. .....+..-++++
T Consensus 98 ~l~~~w~~~~---~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~ 174 (331)
T PF14516_consen 98 KLDEYWDEEI---GSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILA 174 (331)
T ss_pred hHHHHHHHhc---CChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEe
Confidence 111111111 122222333333332 2 689999999997552211 1111 0000111112222
Q ss_pred EeCChHH-Hh----hcC-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHHHHHhccC
Q 002939 143 TARDRHV-LG----SIG-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTLAKALRNK 213 (864)
Q Consensus 143 TtR~~~v-~~----~~~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~~~~l~~~ 213 (864)
.+..... .. .+. ...++|++|+.+|..+|+.++-.. . -....+++...++|+|..+..++..+...
T Consensus 175 ~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-~----~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 175 GSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-F----SQEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred cCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-C----CHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 2211111 11 111 467899999999999998887422 1 12237789999999999999999888664
No 114
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=0.0003 Score=79.22 Aligned_cols=189 Identities=15% Similarity=0.139 Sum_probs=99.6
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE-ccCCCChHHHHHHHHHHhCCccccchh
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAE-VSETPDIGKIQGELADQLGMKFSQGEI 80 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~-~~~~~~~~~~~~~i~~~l~~~~~~~~~ 80 (864)
.++.|.+++.++++. .+.++|+.|+||||+|+.+++........+.-.|.. +......-...+.+.. +.+.+..+.
T Consensus 24 i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~--g~~~n~~~~ 101 (620)
T PRK14954 24 ITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDA--GTSLNISEF 101 (620)
T ss_pred HHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhc--cCCCCeEEe
Confidence 345566677666665 488999999999999999998875432221111111 0011111111111111 011010000
Q ss_pred hhhccccccCCCChhhHHHHHHHHH----hcCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEe-CChHHHhhc
Q 002939 81 ADQRGMKFSQESDVPGRARKLYARL----QKENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTA-RDRHVLGSI 153 (864)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTt-R~~~v~~~~ 153 (864)
.+. .....+.+..+.+.+ ..+++-++|+|+++... ..+.+...+......+.+|++| +...+....
T Consensus 102 ---d~~----s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI 174 (620)
T PRK14954 102 ---DAA----SNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (620)
T ss_pred ---ccc----ccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 000 001112222333333 12456689999997653 3555555554433445555555 434444332
Q ss_pred C--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcch
Q 002939 154 G--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPI 201 (864)
Q Consensus 154 ~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 201 (864)
. ...+++.+++.++....+.+.+.... ..-.++.+..+++.++|.+-
T Consensus 175 ~SRc~~vef~~l~~~ei~~~L~~i~~~eg-i~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 175 ASRCQRFNFKRIPLDEIQSQLQMICRAEG-IQIDADALQLIARKAQGSMR 223 (620)
T ss_pred HhhceEEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCHH
Confidence 2 68899999999999888887662111 11224566788999999665
No 115
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=0.00032 Score=76.68 Aligned_cols=187 Identities=14% Similarity=0.120 Sum_probs=96.9
Q ss_pred hHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhccCC-CeEEEEEccCCCChHHHHHHHHHHhCCccccchh
Q 002939 3 TLKNVQNALLDPDI-SIIGMYGMGGVGKTTLVKEVARRAKKDMLF-DEVVFAEVSETPDIGKIQGELADQLGMKFSQGEI 80 (864)
Q Consensus 3 ~~~~i~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 80 (864)
.++.+.+++..++. ..+.++|+.|+||||+|+.+++.......- +...+-.+ ...+.+......+ .
T Consensus 25 ~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c-----------~~C~~i~~~~~~d-~ 92 (451)
T PRK06305 25 VVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC-----------ASCKEISSGTSLD-V 92 (451)
T ss_pred HHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc-----------HHHHHHhcCCCCc-e
Confidence 45666777776665 467899999999999999999876432110 00000000 0000000000000 0
Q ss_pred hhhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCC-hHHHhhc
Q 002939 81 ADQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARD-RHVLGSI 153 (864)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~-~~v~~~~ 153 (864)
....+. .....+.++.+.+.+. .+++-++|+|+++... ..+.+...+.....+..+|++|.. ..+....
T Consensus 93 ~~i~g~----~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI 168 (451)
T PRK06305 93 LEIDGA----SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTI 168 (451)
T ss_pred EEeecc----ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHH
Confidence 000000 0000011112222221 2566789999987552 344444444433335566666643 3333322
Q ss_pred C--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcch-HHHHH
Q 002939 154 G--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPI-AIVTL 206 (864)
Q Consensus 154 ~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-a~~~~ 206 (864)
. ...+++++++.++....+...+.... ..-.++.+..+++.++|.+- |+..+
T Consensus 169 ~sRc~~v~f~~l~~~el~~~L~~~~~~eg-~~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 169 LSRCQKMHLKRIPEETIIDKLALIAKQEG-IETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred HHhceEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 57899999999999988888763211 11224566788999999765 44333
No 116
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.00053 Score=77.14 Aligned_cols=188 Identities=12% Similarity=0.096 Sum_probs=102.6
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccCCC--eEEEEEccCCCChHHHHHHHHHHhCCccccch
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDMLFD--EVVFAEVSETPDIGKIQGELADQLGMKFSQGE 79 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~--~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~ 79 (864)
.++.|.+++..++.. .+.++|+.|+||||+|+.+++......... ...+-.+.. -.-.+.|...-..+.. +
T Consensus 32 ~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~----c~~C~~i~~g~h~Dv~--e 105 (598)
T PRK09111 32 MVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV----GEHCQAIMEGRHVDVL--E 105 (598)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc----cHHHHHHhcCCCCceE--E
Confidence 456677777776654 689999999999999999998765432111 000101110 0111111111110000 0
Q ss_pred hhhhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEe-CChHHHhh
Q 002939 80 IADQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTA-RDRHVLGS 152 (864)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTt-R~~~v~~~ 152 (864)
+... .....+.++.+.+.+. .+++-++|+|+++... ..+.+...+.....++++|++| ....+...
T Consensus 106 ~~a~-------s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~t 178 (598)
T PRK09111 106 MDAA-------SHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVT 178 (598)
T ss_pred eccc-------ccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHH
Confidence 0000 0011122233333332 2455689999997553 3555555554444456666655 33344332
Q ss_pred cC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHH
Q 002939 153 IG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIV 204 (864)
Q Consensus 153 ~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~ 204 (864)
.. ...++++.++.++....+.+.+.... ..-..+....|++.++|.+..+.
T Consensus 179 I~SRcq~~~f~~l~~~el~~~L~~i~~keg-i~i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 179 VLSRCQRFDLRRIEADVLAAHLSRIAAKEG-VEVEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 22 67899999999999999988773211 11123566788999999887543
No 117
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.00051 Score=76.90 Aligned_cols=185 Identities=13% Similarity=0.109 Sum_probs=100.5
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.++++..++.+++.+ .+.++|+.|+||||+|+.+++........... .|..-.+- +.+... ......++
T Consensus 24 iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~---pC~~C~~C----~~i~~~--~~~dv~~i- 93 (563)
T PRK06647 24 VVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPM---PCGECSSC----KSIDND--NSLDVIEI- 93 (563)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCC---CCccchHH----HHHHcC--CCCCeEEe-
Confidence 456777788776655 57899999999999999999886532111100 00000000 111100 00000000
Q ss_pred hhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCC-hHHHhhcC
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARD-RHVLGSIG 154 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~-~~v~~~~~ 154 (864)
.+ ......+.+..+.+.+. .+++-++|+|+++... .++.+...+........+|++|.. ..+.....
T Consensus 94 --dg----as~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~ 167 (563)
T PRK06647 94 --DG----ASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIK 167 (563)
T ss_pred --cC----cccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHH
Confidence 00 00011111222222211 2566689999997553 456666555544445666666544 33433222
Q ss_pred --CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHH
Q 002939 155 --SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIV 204 (864)
Q Consensus 155 --~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~ 204 (864)
...++..+++.++..+.+...+.... ..-.++.+..|++.++|.+..+.
T Consensus 168 SRc~~~~f~~l~~~el~~~L~~i~~~eg-i~id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 168 SRCQHFNFRLLSLEKIYNMLKKVCLEDQ-IKYEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HhceEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 56789999999999988888762211 12224566678999999876443
No 118
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=2e-06 Score=82.86 Aligned_cols=60 Identities=23% Similarity=0.372 Sum_probs=41.8
Q ss_pred eccccCeeecCccccccccccCCceeecCccceeecccCCCccccccC------cccCCccceEeeC
Q 002939 766 FFPKLESLDLNRLQSLTTFCSANYTFKFPSLCYLSVSACPKMKIFCRG------VLSAPRLEKVRLN 826 (864)
Q Consensus 766 ~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~lp~~------~~~~~~L~~l~l~ 826 (864)
.+|.+--|.+.. +++.++..-+.+..||+|.-|.+.+.|....+-.+ ...+++++.|+-+
T Consensus 222 ~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 222 PFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 467777777777 67777766666778888888888888876665322 2346777777665
No 119
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00033 Score=79.34 Aligned_cols=164 Identities=12% Similarity=0.105 Sum_probs=98.5
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhcc---------------------CCCeEEEEEccCCCCh
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDM---------------------LFDEVVFAEVSETPDI 60 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~---------------------~f~~~~~v~~~~~~~~ 60 (864)
.++.|..++..++.. .+.++|+.|+||||+|+.++....... +|+. ..++......+
T Consensus 25 ~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~ld~~~~~~v 103 (614)
T PRK14971 25 LTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HELDAASNNSV 103 (614)
T ss_pred HHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEecccccCCH
Confidence 456677777777665 478999999999999999888764221 1221 12222211111
Q ss_pred HHHHHHHHHHhCCccccchhhhhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCchh--ccccccCCCCCC
Q 002939 61 GKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWEDL--DLEKVGVPSGND 134 (864)
Q Consensus 61 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~ 134 (864)
. .++.+.+.+. .+++-++|+|+++... ..+.+...+...
T Consensus 104 d-----------------------------------~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep 148 (614)
T PRK14971 104 D-----------------------------------DIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP 148 (614)
T ss_pred H-----------------------------------HHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC
Confidence 1 1112222221 1456688999987653 355565555444
Q ss_pred CCCcEEEEEe-CChHHHhhcC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHH
Q 002939 135 WRGCKVLLTA-RDRHVLGSIG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAI 203 (864)
Q Consensus 135 ~~gs~IivTt-R~~~v~~~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~ 203 (864)
..++.+|++| +...+..... ...+++++++.++....+...+.... .....+.+..|++.++|-+--+
T Consensus 149 p~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg-i~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 149 PSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG-ITAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 4456665555 4444544332 68899999999999999988763211 1122345678899999976533
No 120
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00039 Score=74.96 Aligned_cols=167 Identities=14% Similarity=0.135 Sum_probs=93.0
Q ss_pred hHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcc------CCCe-EEEEEccCCCChHHHHHHHHHHhCCc
Q 002939 3 TLKNVQNALLDPDI-SIIGMYGMGGVGKTTLVKEVARRAKKDM------LFDE-VVFAEVSETPDIGKIQGELADQLGMK 74 (864)
Q Consensus 3 ~~~~i~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~------~f~~-~~~v~~~~~~~~~~~~~~i~~~l~~~ 74 (864)
.++.+.+++.+.+. +.+.++|++|+||||+|+.+++...... .|.. ++.++......+.++ +.+.+++..
T Consensus 25 ~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i-~~l~~~~~~- 102 (367)
T PRK14970 25 ITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI-RNLIDQVRI- 102 (367)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-HHHHHHHhh-
Confidence 45667777776655 4888999999999999999988754321 1111 111111111111111 111111100
Q ss_pred cccchhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCC-hHHHh
Q 002939 75 FSQGEIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARD-RHVLG 151 (864)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~-~~v~~ 151 (864)
... .+++-++|+|+++... .++.+...+........+|+++.. ..+..
T Consensus 103 ----------------------------~p~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 103 ----------------------------PPQ-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred ----------------------------ccc-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 001 1455689999987543 255554333332334556655533 33322
Q ss_pred hcC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcch
Q 002939 152 SIG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPI 201 (864)
Q Consensus 152 ~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 201 (864)
... ...++.++++.++....+...+.... ..-.++.+..+++.++|-+-
T Consensus 154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g-~~i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEG-IKFEDDALHIIAQKADGALR 204 (367)
T ss_pred HHHhcceeEecCCccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhCCCCHH
Confidence 221 56889999999999998888763211 11224566788888888665
No 121
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.0004 Score=78.69 Aligned_cols=188 Identities=14% Similarity=0.071 Sum_probs=100.8
Q ss_pred hHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPDI-SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.++.|..++..++. ..+.++|+.|+||||+|+.++........... .. .....-+..+.+......+.. +..
T Consensus 24 i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-~~----~~Cg~C~~C~~i~~g~h~D~~--ei~ 96 (620)
T PRK14948 24 IATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-TP----EPCGKCELCRAIAAGNALDVI--EID 96 (620)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-CC----CCCcccHHHHHHhcCCCccEE--EEe
Confidence 34566666666554 57889999999999999999998754321110 00 011111222222222111110 000
Q ss_pred hhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEeCC-hHHHhhcC
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTARD-RHVLGSIG 154 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~-~~v~~~~~ 154 (864)
. ......+.++.+.+.+. .+++-++|+|+++.. ...+.+...+........+|++|.+ ..+.....
T Consensus 97 ~-------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 97 A-------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred c-------cccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHH
Confidence 0 00011122333333332 245668999999865 3355555444433334555555544 33333222
Q ss_pred --CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHH
Q 002939 155 --SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVT 205 (864)
Q Consensus 155 --~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~ 205 (864)
...+++..++.++....+...+...... -..+.+..+++.++|.+..+..
T Consensus 170 SRc~~~~f~~l~~~ei~~~L~~ia~kegi~-is~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 170 SRCQRFDFRRIPLEAMVQHLSEIAEKESIE-IEPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred hheeEEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 5778999999999888887766321111 1134567889999998764433
No 122
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.04 E-value=3.1e-07 Score=98.84 Aligned_cols=119 Identities=23% Similarity=0.239 Sum_probs=95.7
Q ss_pred CccEEEecCcccccc-ccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeeccc
Q 002939 388 DLRTLCLDGCKLEDI-RIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMAT 466 (864)
Q Consensus 388 ~L~~L~L~~~~l~~l-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 466 (864)
.|.+.+.++|.+..+ .++.-++.|+.|||++|+++... .+..|++|++|||++|. +..+|.-....+. |+.|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecc
Confidence 466666777777766 66788899999999999999776 78899999999999997 8888764333444 99999999
Q ss_pred ccccc--ccccCCcchhhhcCCCCccC----CCCccCcccceecccccc
Q 002939 467 CCIKW--EISNCSLLEEIVGKEGGVEA----DPSFVFPRLTILQLCYLP 509 (864)
Q Consensus 467 ~~~~~--~~~~~~~L~~L~~~~~~~~~----~~~~~~~~L~~L~l~~~~ 509 (864)
|.+.. ++.++++|+.|+++.|-+.+ .+.+.+..|+.|.|.+.+
T Consensus 242 N~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 242 NALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred cHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 99875 78999999999999986655 345566788888887755
No 123
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00075 Score=74.34 Aligned_cols=187 Identities=12% Similarity=0.018 Sum_probs=96.1
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.++.+.+++..+++. .+.++|+.|+||||+|+.++........-+ .-.|.... -...+......
T Consensus 24 i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~---~~pc~~c~--------nc~~i~~g~~~---- 88 (486)
T PRK14953 24 VVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQE---GEPCGKCE--------NCVEIDKGSFP---- 88 (486)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCC---CCCCCccH--------HHHHHhcCCCC----
Confidence 345666777766655 456899999999999999998754211000 00000000 00000000000
Q ss_pred hhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEe-CChHHHhhcC
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTA-RDRHVLGSIG 154 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTt-R~~~v~~~~~ 154 (864)
+...... ......+..+.+.+... .+++-++|+|+++.. ...+.+...+........+|++| +...+.....
T Consensus 89 d~~eida-as~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~ 167 (486)
T PRK14953 89 DLIEIDA-ASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTIL 167 (486)
T ss_pred cEEEEeC-ccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHH
Confidence 0000000 00001111222333222 256679999999754 23444444443333344555554 4333433222
Q ss_pred --CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHH
Q 002939 155 --SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTL 206 (864)
Q Consensus 155 --~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~ 206 (864)
...+++.+++.++....+..++.... .....+.+..+++.++|.+..+...
T Consensus 168 SRc~~i~f~~ls~~el~~~L~~i~k~eg-i~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 168 SRCQRFIFSKPTKEQIKEYLKRICNEEK-IEYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred HhceEEEcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 57899999999999999888773211 1222345667888999977644433
No 124
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.01 E-value=9.2e-06 Score=84.77 Aligned_cols=136 Identities=22% Similarity=0.312 Sum_probs=96.3
Q ss_pred cccccccceeecCCCcCccccccccccccccccccCccEEEeecccccccccCCccccCCccEEEEecCcCceeeechhh
Q 002939 652 VGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKNLLPSSASFRCLTKLSVWCCEQLINLVTSSA 731 (864)
Q Consensus 652 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 731 (864)
+..+.+++.|++++| .+++++ ...++|++|.+++|+.++.+|..+ .++|++|++++|.++..++
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP---------~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP---- 111 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLP---------VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP---- 111 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccC---------CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc----
Confidence 445789999999998 777762 235679999999999998876443 5789999999998876653
Q ss_pred hhhhccccEEEecC--ccchHHhhhccccccCcceeeccccCeeecCccccccccccCCceeec-CccceeecccCCCcc
Q 002939 732 AKNLVQLVTMKVDG--CSKITELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFCSANYTFKF-PSLCYLSVSACPKMK 808 (864)
Q Consensus 732 ~~~l~~L~~L~l~~--c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~-~~L~~L~i~~C~~l~ 808 (864)
++|+.|++.+ |..+..+| ++|+.|.+.+++....... ...+ ++|++|.|.+|+.+.
T Consensus 112 ----~sLe~L~L~~n~~~~L~~LP--------------ssLk~L~I~~~n~~~~~~l---p~~LPsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 112 ----ESVRSLEIKGSATDSIKNVP--------------NGLTSLSINSYNPENQARI---DNLISPSLKTLSLTGCSNII 170 (426)
T ss_pred ----cccceEEeCCCCCcccccCc--------------chHhheecccccccccccc---ccccCCcccEEEecCCCccc
Confidence 3577888764 22233333 5899998865432221111 1123 589999999999664
Q ss_pred ccccCcccCCccceEeeCC
Q 002939 809 IFCRGVLSAPRLEKVRLND 827 (864)
Q Consensus 809 ~lp~~~~~~~~L~~l~l~~ 827 (864)
+|..+ +.+|+.|+++.
T Consensus 171 -LP~~L--P~SLk~L~ls~ 186 (426)
T PRK15386 171 -LPEKL--PESLQSITLHI 186 (426)
T ss_pred -Ccccc--cccCcEEEecc
Confidence 66654 58999999873
No 125
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.01 E-value=5.9e-05 Score=75.18 Aligned_cols=160 Identities=11% Similarity=0.079 Sum_probs=91.4
Q ss_pred HHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhh
Q 002939 5 KNVQNALLD-PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQ 83 (864)
Q Consensus 5 ~~i~~~l~~-~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 83 (864)
+.+.++... ...+.+.|+|+.|+|||+||+.+++.....+ ..+.++++..... .+
T Consensus 30 ~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~--~~~~~i~~~~~~~----------~~------------ 85 (227)
T PRK08903 30 ARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG--RNARYLDAASPLL----------AF------------ 85 (227)
T ss_pred HHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEehHHhHH----------HH------------
Confidence 334444442 3446899999999999999999999864331 2355666443110 00
Q ss_pred ccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchhcc--ccccCCCCC-CCCCc-EEEEEeCChHHHh--------
Q 002939 84 RGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDLDL--EKVGVPSGN-DWRGC-KVLLTARDRHVLG-------- 151 (864)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~~--~~l~~~~~~-~~~gs-~IivTtR~~~v~~-------- 151 (864)
... .+.-+||+||++....+ +.+...+.. ...+. .||+|++......
T Consensus 86 -------------------~~~--~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s 144 (227)
T PRK08903 86 -------------------DFD--PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT 144 (227)
T ss_pred -------------------hhc--ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH
Confidence 011 23347888999654321 122222211 11233 4666766432111
Q ss_pred hcC-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHHHHHh
Q 002939 152 SIG-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTLAKAL 210 (864)
Q Consensus 152 ~~~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~~~~l 210 (864)
.+. ...++++++++++-..++.+.+.... ..-.++....+++...|.+..+..+...+
T Consensus 145 r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~-v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 145 RLGWGLVYELKPLSDADKIAALKAAAAERG-LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHhcCeEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 222 46889999999887777776542111 12224566778888899888776555443
No 126
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.00 E-value=6.8e-05 Score=79.16 Aligned_cols=135 Identities=16% Similarity=0.228 Sum_probs=76.3
Q ss_pred hHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPDI-SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.++.+.+++.+.+. .++.++|++|+||||+|+.+++.... .+.+++++. .....+ ++.+...
T Consensus 29 ~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~~~i-~~~l~~~---------- 91 (316)
T PHA02544 29 DKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRIDFV-RNRLTRF---------- 91 (316)
T ss_pred HHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-ccHHHH-HHHHHHH----------
Confidence 45677778776655 46666999999999999999987532 234555544 222111 1111110
Q ss_pred hhccccccCCCChhhHHHHHHHHH-hcCCeEEEEEcCCCch--h-ccccccCCCCCCCCCcEEEEEeCChHHH-hhc-C-
Q 002939 82 DQRGMKFSQESDVPGRARKLYARL-QKENKILVILDNIWED--L-DLEKVGVPSGNDWRGCKVLLTARDRHVL-GSI-G- 154 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~LlvlDdv~~~--~-~~~~l~~~~~~~~~gs~IivTtR~~~v~-~~~-~- 154 (864)
.... ..+.+-++|+||++.. . ..+.+...+.....+.++|+||...... ... +
T Consensus 92 --------------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 92 --------------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred --------------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 0000 0134557899999755 1 1222222222233467888888754322 211 1
Q ss_pred CceEEcCCCCHHHHHHHHHH
Q 002939 155 SKTFQIDVLNEEEAWTLFKK 174 (864)
Q Consensus 155 ~~~~~l~~L~~~e~~~l~~~ 174 (864)
...+.++..+.++..+++..
T Consensus 152 ~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHH
Confidence 45678878888887766554
No 127
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.99 E-value=7.1e-05 Score=80.50 Aligned_cols=149 Identities=17% Similarity=0.232 Sum_probs=83.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
..+.|.++|++|+|||++|+++++..... .+.+.++. +.... ....
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~-----~i~v~~~~----------l~~~~-------------------~g~~ 209 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNAT-----FIRVVGSE----------LVQKF-------------------IGEG 209 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCC-----EEEeehHH----------HhHhh-------------------ccch
Confidence 35679999999999999999999876532 22222211 11110 0011
Q ss_pred hhHHHHHHHHHhcCCeEEEEEcCCCchh------------c----cccccCCCCC--CCCCcEEEEEeCChHHHh----h
Q 002939 95 PGRARKLYARLQKENKILVILDNIWEDL------------D----LEKVGVPSGN--DWRGCKVLLTARDRHVLG----S 152 (864)
Q Consensus 95 ~~~~~~~~~~l~~~~~~LlvlDdv~~~~------------~----~~~l~~~~~~--~~~gs~IivTtR~~~v~~----~ 152 (864)
......+.+........+|++||++... + +..+...... ...+.+||.||....... .
T Consensus 210 ~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allR 289 (389)
T PRK03992 210 ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILR 289 (389)
T ss_pred HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcC
Confidence 2223344444444567899999997541 0 1111111111 123457777776543322 1
Q ss_pred cC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCc
Q 002939 153 IG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGL 199 (864)
Q Consensus 153 ~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 199 (864)
.+ ...++++..+.++..++|+.+.....-..+. ....+++.+.|+
T Consensus 290 pgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~ 336 (389)
T PRK03992 290 PGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGA 336 (389)
T ss_pred CccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCC
Confidence 12 5679999999999999999887432222111 134566666664
No 128
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00063 Score=77.38 Aligned_cols=187 Identities=13% Similarity=0.101 Sum_probs=101.7
Q ss_pred hHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPDI-SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.++.|..++..+++ ..+.++|+.|+||||+|+.++........... ....+.-...+.+......... ++.
T Consensus 24 ~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~------~~~c~~c~~c~~i~~~~~~d~~--~i~ 95 (585)
T PRK14950 24 VVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK------GRPCGTCEMCRAIAEGSAVDVI--EMD 95 (585)
T ss_pred HHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCCccCHHHHHHhcCCCCeEE--EEe
Confidence 35566667766655 45689999999999999999988653211100 0011111222233221111100 000
Q ss_pred hhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEeCCh-HHHhhcC
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTARDR-HVLGSIG 154 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~-~v~~~~~ 154 (864)
. . .....+.+..+.+.+. .+++-++|+|+++.. ...+.+...+........+|+++.+. .+.....
T Consensus 96 -~--~----~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~ 168 (585)
T PRK14950 96 -A--A----SHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATIL 168 (585)
T ss_pred -c--c----ccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHH
Confidence 0 0 0011112233333332 246679999999755 33555554444333455666666443 3333222
Q ss_pred --CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHH
Q 002939 155 --SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVT 205 (864)
Q Consensus 155 --~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~ 205 (864)
...++++.++.++....+...+..... .-.++.+..+++.++|.+..+..
T Consensus 169 SR~~~i~f~~l~~~el~~~L~~~a~~egl-~i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 169 SRCQRFDFHRHSVADMAAHLRKIAAAEGI-NLEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred hccceeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 577899999999999888887632111 12245677899999998875443
No 129
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.00018 Score=79.10 Aligned_cols=187 Identities=13% Similarity=0.089 Sum_probs=98.7
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.++.+..++..++.. +..++|+.|+||||+|+.+++........+.. ....-.-.+.+........- +..
T Consensus 22 v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~-------pC~~C~~C~~~~~~~h~dv~--eld 92 (535)
T PRK08451 22 VSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSST-------PCDTCIQCQSALENRHIDII--EMD 92 (535)
T ss_pred HHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCC-------CCcccHHHHHHhhcCCCeEE--Eec
Confidence 356677777777665 55899999999999999998876432111100 00000000000000000000 000
Q ss_pred hhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCCh-HHHhhcC
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARDR-HVLGSIG 154 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~-~v~~~~~ 154 (864)
+. .....++ ++.+.+... .+++-++|+|+++... ..+.+...+......+++|++|.+. .+.....
T Consensus 93 ---aa---s~~gId~-IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~ 165 (535)
T PRK08451 93 ---AA---SNRGIDD-IRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATIL 165 (535)
T ss_pred ---cc---cccCHHH-HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHH
Confidence 00 0000111 111111111 1456799999997653 3444444443333456777777654 2222122
Q ss_pred --CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHH
Q 002939 155 --SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTL 206 (864)
Q Consensus 155 --~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~ 206 (864)
...+++.+++.++..+.+.+.+..... .-.++.+..|++.++|-+..+...
T Consensus 166 SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi-~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 166 SRTQHFRFKQIPQNSIISHLKTILEKEGV-SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hhceeEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 578999999999999998887732111 122456678999999988644433
No 130
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.98 E-value=0.00016 Score=79.02 Aligned_cols=158 Identities=12% Similarity=0.132 Sum_probs=94.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
..-+.|+|++|+|||+|++++++.......-..++|+++. ++..++...+... .
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~------~f~~~~~~~~~~~------------------~-- 183 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDSMKEG------------------K-- 183 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHhcc------------------c--
Confidence 3569999999999999999999987654222357787653 4455555554211 1
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCchh---cc-ccccCCCCC-CCCCcEEEEEeC-ChHHHh--------hcC-CceEEc
Q 002939 96 GRARKLYARLQKENKILVILDNIWEDL---DL-EKVGVPSGN-DWRGCKVLLTAR-DRHVLG--------SIG-SKTFQI 160 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~~~---~~-~~l~~~~~~-~~~gs~IivTtR-~~~v~~--------~~~-~~~~~l 160 (864)
...+.+... .+.-+||+||++... .+ +.+...+.. ...|..||+||. .+.-.. ++. ...+++
T Consensus 184 --~~~f~~~~~-~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i 260 (440)
T PRK14088 184 --LNEFREKYR-KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKL 260 (440)
T ss_pred --HHHHHHHHH-hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEee
Confidence 122333332 244589999997431 11 122111111 112457888884 332221 222 457899
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHH
Q 002939 161 DVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAI 203 (864)
Q Consensus 161 ~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~ 203 (864)
++.+.+.-.+++++.+... ...-.++....|++.+.|..-.+
T Consensus 261 ~~pd~e~r~~IL~~~~~~~-~~~l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 261 EPPDEETRKKIARKMLEIE-HGELPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred CCCCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHhccccCHHHH
Confidence 9999999999999887421 11223567778888887754443
No 131
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.97 E-value=2.7e-06 Score=96.87 Aligned_cols=126 Identities=19% Similarity=0.217 Sum_probs=70.8
Q ss_pred ccceEEEeecCCcc--CCCCCC--cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccE
Q 002939 316 KKCSTISLHGNNIS--EIPQGW--ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRT 391 (864)
Q Consensus 316 ~~l~~L~l~~~~~~--~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~ 391 (864)
.++++|++++...- ..+..+ .+|.|++|.+.+....... -..++.++++|++||+|+++++.+ ..+++|++||+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 47788888774322 222222 5677777777652222111 123445677777777777777766 44667777777
Q ss_pred EEecCccccc---cccccccCcccEEeCCCCCCccCchh-------hccccccceecccccc
Q 002939 392 LCLDGCKLED---IRIIGELKELEILSLQGCDIEHLPRE-------IGQLTQLKLLDLSYCF 443 (864)
Q Consensus 392 L~L~~~~l~~---l~~~~~l~~L~~L~l~~~~i~~lp~~-------~~~l~~L~~L~l~~~~ 443 (864)
|.+.+-.+.. +..+.+|++|+.||+|......-+.- -..||+|+.||.+++.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 7776665554 24566677777777776543322211 1235666666666554
No 132
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.97 E-value=2.3e-05 Score=84.00 Aligned_cols=149 Identities=17% Similarity=0.222 Sum_probs=84.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
.+.+.++|++|+|||++|+++++..... | +.+.. .++... .++ ...
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~--~-----~~v~~----~~l~~~---~~g--------------------~~~ 201 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNAT--F-----IRVVG----SELVRK---YIG--------------------EGA 201 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCC--E-----Eecch----HHHHHH---hhh--------------------HHH
Confidence 4579999999999999999999976532 2 22111 111110 010 011
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCchh----------------ccccccCCCC--CCCCCcEEEEEeCChHHHh-----h
Q 002939 96 GRARKLYARLQKENKILVILDNIWEDL----------------DLEKVGVPSG--NDWRGCKVLLTARDRHVLG-----S 152 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~~~----------------~~~~l~~~~~--~~~~gs~IivTtR~~~v~~-----~ 152 (864)
.....+.+........+|++|+++... .+..+...+. ....+.+||.||....... .
T Consensus 202 ~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~ 281 (364)
T TIGR01242 202 RLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRP 281 (364)
T ss_pred HHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCc
Confidence 222333444434567899999987541 0111111111 1123567888887543222 1
Q ss_pred cC-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcc
Q 002939 153 IG-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLP 200 (864)
Q Consensus 153 ~~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 200 (864)
.+ ...+.++..+.++..++|..++.......+. ....+++.+.|+.
T Consensus 282 grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 282 GRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred ccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 12 5678999999999999999887332212111 1346777777764
No 133
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=0.0011 Score=69.13 Aligned_cols=94 Identities=13% Similarity=0.143 Sum_probs=60.1
Q ss_pred CCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEeCChH-HHhhcC--CceEEcCCCCHHHHHHHHHHhhCCCCCC
Q 002939 108 ENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTARDRH-VLGSIG--SKTFQIDVLNEEEAWTLFKKMTGDCAEK 182 (864)
Q Consensus 108 ~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~~-v~~~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~ 182 (864)
+++-++|+|+++.. ...+.+...+.....++.+|+||.+.. +..... ...+.+.+++.+++.+.+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~---- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE---- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc----
Confidence 44556678999765 334444444433334667777777654 333222 678999999999999998875421
Q ss_pred CcchHHHHHHHHhcCCcchHHHHH
Q 002939 183 GELNFVAIDITKECGGLPIAIVTL 206 (864)
Q Consensus 183 ~~~~~~~~~i~~~~~g~Pla~~~~ 206 (864)
..++.+..++..++|.|.....+
T Consensus 181 -~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 -SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -CChHHHHHHHHHcCCCHHHHHHH
Confidence 11334457789999999755433
No 134
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.93 E-value=0.00025 Score=80.67 Aligned_cols=202 Identities=19% Similarity=0.112 Sum_probs=101.9
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCC---e--EEEEEccCC-CChHHHHHHHH---------
Q 002939 4 LKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFD---E--VVFAEVSET-PDIGKIQGELA--------- 68 (864)
Q Consensus 4 ~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~---~--~~~v~~~~~-~~~~~~~~~i~--------- 68 (864)
++.+.+.+.......+.|+|++|+||||+|+.+++.......+. . .+.+++... .+...+...++
T Consensus 163 ~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~ 242 (615)
T TIGR02903 163 IKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQ 242 (615)
T ss_pred HHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHH
Confidence 44566666656667899999999999999999988765432221 1 233333321 12222211111
Q ss_pred ------HHhCCccccchh-hh-hccccccCC-CC-hhhHHHHHHHHHhcCCeEEEEEcCCCch--hccccccCCCCCCCC
Q 002939 69 ------DQLGMKFSQGEI-AD-QRGMKFSQE-SD-VPGRARKLYARLQKENKILVILDNIWED--LDLEKVGVPSGNDWR 136 (864)
Q Consensus 69 ------~~l~~~~~~~~~-~~-~~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~ 136 (864)
+..+........ .. ..+..+.++ .. .......+.+.+. .+++.++-|+.|.. ..|+.+...+..+.+
T Consensus 243 ~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~ 321 (615)
T TIGR02903 243 GARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE-DKRVEFSSSYYDPDDPNVPKYIKKLFEEGAP 321 (615)
T ss_pred HHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh-hCeEEeecceeccCCcccchhhhhhcccCcc
Confidence 111110000000 00 001111111 11 1223455666664 67888887766543 346666555555444
Q ss_pred CcEEEE--EeCChHH-HhhcC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHHH
Q 002939 137 GCKVLL--TARDRHV-LGSIG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTLA 207 (864)
Q Consensus 137 gs~Iiv--TtR~~~v-~~~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~~ 207 (864)
...|++ ||++... ..... ...+.+.+++.++.++++.+.+..... .-.++....|+++...-+.++..++
T Consensus 322 ~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~ls~eal~~L~~ys~~gRraln~L~ 396 (615)
T TIGR02903 322 ADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HLAAGVEELIARYTIEGRKAVNILA 396 (615)
T ss_pred ceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHCCCcHHHHHHHHH
Confidence 545555 5664432 11111 356789999999999999998742111 1113334444454443344554443
No 135
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.92 E-value=0.00016 Score=78.84 Aligned_cols=157 Identities=16% Similarity=0.168 Sum_probs=93.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
...+.|+|+.|+|||+|++++++....+..-..++|+++. ++...+...+...
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------------------- 188 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE------KFTNDFVNALRNN--------------------- 188 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH------HHHHHHHHHHHcC---------------------
Confidence 3578999999999999999999987654222346777643 3334444444211
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCchhc---c-ccccCCCCC-CCCCcEEEEEeCCh-HHH--------hhcC-CceEEc
Q 002939 96 GRARKLYARLQKENKILVILDNIWEDLD---L-EKVGVPSGN-DWRGCKVLLTARDR-HVL--------GSIG-SKTFQI 160 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~~~~---~-~~l~~~~~~-~~~gs~IivTtR~~-~v~--------~~~~-~~~~~l 160 (864)
....+.+.+. +.-+||+||++.... + +.+...+.. ...|..||+|+... ... .++. ...+++
T Consensus 189 -~~~~~~~~~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i 265 (405)
T TIGR00362 189 -KMEEFKEKYR--SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDI 265 (405)
T ss_pred -CHHHHHHHHH--hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEe
Confidence 1223334443 234889999975421 1 112111111 01345688888642 211 1222 357899
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHH
Q 002939 161 DVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAI 203 (864)
Q Consensus 161 ~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~ 203 (864)
++.+.++..+++.+.+.... ..-.++....|++.+.|.+-.+
T Consensus 266 ~~pd~~~r~~il~~~~~~~~-~~l~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 266 EPPDLETRLAILQKKAEEEG-LELPDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred CCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCHHHH
Confidence 99999999999999884321 2223566778888888766543
No 136
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.91 E-value=0.0001 Score=74.99 Aligned_cols=132 Identities=11% Similarity=0.175 Sum_probs=69.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
....+.++|++|+||||+|+.+++.....+.-....++.++.. ++ .... . ...
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l----~~~~---~---------------g~~- 93 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DL----VGEY---I---------------GHT- 93 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hh----hhhh---c---------------cch-
Confidence 3457889999999999999999987543211111112222211 11 1110 0 000
Q ss_pred hhHHHHHHHHHhcCCeEEEEEcCCCchh----------ccccccCCCCCCCCCcEEEEEeCChHH----------HhhcC
Q 002939 95 PGRARKLYARLQKENKILVILDNIWEDL----------DLEKVGVPSGNDWRGCKVLLTARDRHV----------LGSIG 154 (864)
Q Consensus 95 ~~~~~~~~~~l~~~~~~LlvlDdv~~~~----------~~~~l~~~~~~~~~gs~IivTtR~~~v----------~~~~~ 154 (864)
......+.+.. ..-+|++|+++... ..+.+..........-.+|+++...+. ..++
T Consensus 94 ~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf- 169 (261)
T TIGR02881 94 AQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRF- 169 (261)
T ss_pred HHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhcc-
Confidence 11112222222 22488999997532 233333333222223355556544322 1111
Q ss_pred CceEEcCCCCHHHHHHHHHHhhC
Q 002939 155 SKTFQIDVLNEEEAWTLFKKMTG 177 (864)
Q Consensus 155 ~~~~~l~~L~~~e~~~l~~~~~~ 177 (864)
...+++++++.++..+++.+.+.
T Consensus 170 ~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 170 PISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred ceEEEECCCCHHHHHHHHHHHHH
Confidence 35689999999999999998873
No 137
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=2.7e-06 Score=82.04 Aligned_cols=212 Identities=17% Similarity=0.116 Sum_probs=115.5
Q ss_pred hhcCCcceeecccccccccccccccCcccccCccEEEeecCCccccchhHHHHcccccEEEEEccccccccccccchhhh
Q 002939 572 KVLPNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSYKELFSNEGQVEKL 651 (864)
Q Consensus 572 ~~l~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~ 651 (864)
..+..++.+++.+| .+++|-.-.--...+|.|+.|++++|.+.......-....+|+.|-+.+..+. -....+.
T Consensus 68 ~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~-----w~~~~s~ 141 (418)
T KOG2982|consen 68 SSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS-----WTQSTSS 141 (418)
T ss_pred HHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC-----hhhhhhh
Confidence 34677888888888 44443211111123788888888888776543321124568888888776662 1233455
Q ss_pred cccccccceeecCCCcCccccccccccccccccccCccEEEeecccccccc--cCCccccCCccEEEEecCcCceeeech
Q 002939 652 VGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKNL--LPSSASFRCLTKLSVWCCEQLINLVTS 729 (864)
Q Consensus 652 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~--~~~~~~~~~L~~L~l~~c~~l~~~~~~ 729 (864)
+..+|.++.|+++. ++++.+..-.... ...-+.+++|+...|...... -.....||++..+.+..|| +++....
T Consensus 142 l~~lP~vtelHmS~-N~~rq~n~Dd~c~--e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~e 217 (418)
T KOG2982|consen 142 LDDLPKVTELHMSD-NSLRQLNLDDNCI--EDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSE 217 (418)
T ss_pred hhcchhhhhhhhcc-chhhhhccccccc--cccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhc
Confidence 67788888888887 4444432222221 123346666777666543321 1112467888888887765 3333222
Q ss_pred hhhhhhccccEEEecCccchHHhhhccccccCcceeeccccCeeecCccccccccccCC----ceeecCccceee
Q 002939 730 SAAKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFCSAN----YTFKFPSLCYLS 800 (864)
Q Consensus 730 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~----~~~~~~~L~~L~ 800 (864)
.....+|.+--|+++. .++.+... ..+...||+|+.|.+++.|-...+..++ ....++.+|.|+
T Consensus 218 k~se~~p~~~~LnL~~-~~idswas------vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 218 KGSEPFPSLSCLNLGA-NNIDSWAS------VDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred ccCCCCCcchhhhhcc-cccccHHH------HHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 3334445555555555 33333321 1112247888888888766666554322 233455555553
No 138
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.87 E-value=3.4e-06 Score=96.04 Aligned_cols=135 Identities=21% Similarity=0.225 Sum_probs=104.2
Q ss_pred CCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccc--cCCcccccCCCccEEEecCccccccccccccCcccEE
Q 002939 337 CPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLL--SLPSSIRLLTDLRTLCLDGCKLEDIRIIGELKELEIL 414 (864)
Q Consensus 337 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~l~~l~~~~~l~~L~~L 414 (864)
-.+|+.|++.|........+..+...+|.||.|.+.+-.+. .+..-..++++|+.||+++++++.+..+++|++|+.|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 35899999988665555666677778999999999997664 3344467899999999999999999999999999999
Q ss_pred eCCCCCCccCc--hhhccccccceeccccccccccc--Ch---hhhhcCcccceeecccccccc
Q 002939 415 SLQGCDIEHLP--REIGQLTQLKLLDLSYCFELKVI--AP---NVLSNLSQLEELYMATCCIKW 471 (864)
Q Consensus 415 ~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~~--~~---~~l~~l~~L~~L~l~~~~~~~ 471 (864)
.+++=.+..-. ..+..|++|++||+|........ .. ..-..|++|+.||.+++.+..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 99987776432 35678999999999987533221 11 112348999999999887654
No 139
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.9e-05 Score=54.32 Aligned_cols=37 Identities=27% Similarity=0.437 Sum_probs=17.3
Q ss_pred CccEEEecCcccccccc-ccccCcccEEeCCCCCCccC
Q 002939 388 DLRTLCLDGCKLEDIRI-IGELKELEILSLQGCDIEHL 424 (864)
Q Consensus 388 ~L~~L~L~~~~l~~l~~-~~~l~~L~~L~l~~~~i~~l 424 (864)
+|++|++++|+|++++. +++|++|++|++++|+++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 44555555555555433 55555555555555544433
No 140
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.87 E-value=3.3e-05 Score=69.61 Aligned_cols=69 Identities=23% Similarity=0.267 Sum_probs=44.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhhHH
Q 002939 19 IGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPGRA 98 (864)
Q Consensus 19 i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (864)
|.|+|++|+||||+|+.++++.... ++.++.+...+. . ..+....+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~-----~~~i~~~~~~~~---------------~--------------~~~~~~~i 46 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP-----FIEIDGSELISS---------------Y--------------AGDSEQKI 46 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE-----EEEEETTHHHTS---------------S--------------TTHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc-----cccccccccccc---------------c--------------cccccccc
Confidence 6799999999999999999997532 456655432100 0 11223334
Q ss_pred HHHHHHHhcCC-eEEEEEcCCCch
Q 002939 99 RKLYARLQKEN-KILVILDNIWED 121 (864)
Q Consensus 99 ~~~~~~l~~~~-~~LlvlDdv~~~ 121 (864)
..+.+...+.. +.+|++||++..
T Consensus 47 ~~~~~~~~~~~~~~vl~iDe~d~l 70 (132)
T PF00004_consen 47 RDFFKKAKKSAKPCVLFIDEIDKL 70 (132)
T ss_dssp HHHHHHHHHTSTSEEEEEETGGGT
T ss_pred ccccccccccccceeeeeccchhc
Confidence 44444444344 899999999754
No 141
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.87 E-value=0.0022 Score=66.33 Aligned_cols=179 Identities=11% Similarity=0.060 Sum_probs=97.4
Q ss_pred HHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhh
Q 002939 4 LKNVQNALLDPDI-SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIAD 82 (864)
Q Consensus 4 ~~~i~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 82 (864)
-+++...+..+++ ....++|+.|+||+++|+.++.-.-..+..... .|..- ..-+.+.. +..........
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~---~Cg~C----~sC~~~~~--g~HPD~~~i~p 81 (325)
T PRK06871 11 YQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQ---PCGQC----HSCHLFQA--GNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCCC----HHHHHHhc--CCCCCEEEEcc
Confidence 4567777777665 466689999999999999999876543211100 01000 00011110 00000000000
Q ss_pred hccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCCh-HHHhhcC-
Q 002939 83 QRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARDR-HVLGSIG- 154 (864)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~-~v~~~~~- 154 (864)
..+ ..-..+.++.+.+.+. .+++=++|+|+++... ..+.+...+-....+..+|++|.+. .+.....
T Consensus 82 ~~~-----~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 82 IDN-----KDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred ccC-----CCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 000 0001122223333332 3566788999998653 3444444444444466777777665 3443322
Q ss_pred -CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchH
Q 002939 155 -SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIA 202 (864)
Q Consensus 155 -~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 202 (864)
...+.+.+++.++..+.+...... . ...+...++.++|.|..
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~~~--~----~~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQSSA--E----ISEILTALRINYGRPLL 199 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHhcc--C----hHHHHHHHHHcCCCHHH
Confidence 688999999999999988876421 1 11245667889999963
No 142
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.86 E-value=0.00026 Score=78.27 Aligned_cols=157 Identities=16% Similarity=0.142 Sum_probs=95.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
...+.|+|++|+|||+|++.+++....+..-..++|+++. ++...+...+...
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------------------- 200 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN--------------------- 200 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC---------------------
Confidence 3679999999999999999999997654222346777654 2333444444210
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCchhc----cccccCCCCC-CCCCcEEEEEeCChH--H-------HhhcC-CceEEc
Q 002939 96 GRARKLYARLQKENKILVILDNIWEDLD----LEKVGVPSGN-DWRGCKVLLTARDRH--V-------LGSIG-SKTFQI 160 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~~~~----~~~l~~~~~~-~~~gs~IivTtR~~~--v-------~~~~~-~~~~~l 160 (864)
....+.+.+. +.-+||+||++.... -+.+...+.. ...|..||+||.... + ..++. ...+++
T Consensus 201 -~~~~~~~~~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i 277 (450)
T PRK00149 201 -TMEEFKEKYR--SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDI 277 (450)
T ss_pred -cHHHHHHHHh--cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEe
Confidence 1123344443 344899999964311 1122211111 112456888886532 1 12233 467899
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHH
Q 002939 161 DVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAI 203 (864)
Q Consensus 161 ~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~ 203 (864)
++.+.++..+++++.+... ...-.++....|++.+.|..-.+
T Consensus 278 ~~pd~~~r~~il~~~~~~~-~~~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 278 EPPDLETRIAILKKKAEEE-GIDLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred cCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHcCcCCCHHHH
Confidence 9999999999999988432 12223567778888888876643
No 143
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.86 E-value=2.3e-05 Score=75.52 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=34.1
Q ss_pred chHHHHHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC
Q 002939 2 STLKNVQNALL---DPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET 57 (864)
Q Consensus 2 ~~~~~i~~~l~---~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~ 57 (864)
++++++...+. ....+.+.|+|++|+|||+++++++........+ ++.+.+...
T Consensus 7 ~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~--~~~~~~~~~ 63 (185)
T PF13191_consen 7 EEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY--VISINCDDS 63 (185)
T ss_dssp HHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT----EEEEEEETT
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE--EEEEEEecc
Confidence 46778888882 3456899999999999999999999998876333 444444433
No 144
>CHL00176 ftsH cell division protein; Validated
Probab=97.86 E-value=0.00015 Score=82.21 Aligned_cols=161 Identities=18% Similarity=0.206 Sum_probs=91.9
Q ss_pred hHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCC
Q 002939 3 TLKNVQNALLDP---------DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGM 73 (864)
Q Consensus 3 ~~~~i~~~l~~~---------~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 73 (864)
+++++++++.+. ..+-|.++|++|+|||++|+.++...... .+.++++. +... ..+
T Consensus 194 ~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~is~s~------f~~~---~~g- 258 (638)
T CHL00176 194 EFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFSISGSE------FVEM---FVG- 258 (638)
T ss_pred HHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eeeccHHH------HHHH---hhh-
Confidence 455666666542 23579999999999999999999876432 22222221 1000 000
Q ss_pred ccccchhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchh------------c----cccccCCCCC--CC
Q 002939 74 KFSQGEIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDL------------D----LEKVGVPSGN--DW 135 (864)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~------------~----~~~l~~~~~~--~~ 135 (864)
........+.+........+|++||++... . +..+...... ..
T Consensus 259 -------------------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 259 -------------------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred -------------------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 011223344444545778999999996431 0 1222222111 22
Q ss_pred CCcEEEEEeCChHHHh----hc-C-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCc
Q 002939 136 RGCKVLLTARDRHVLG----SI-G-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGL 199 (864)
Q Consensus 136 ~gs~IivTtR~~~v~~----~~-~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 199 (864)
.+-.||.||....... +. + ...+.++..+.++-.++++.++...... .+.....+++.+.|+
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~--~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS--PDVSLELIARRTPGF 387 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc--hhHHHHHHHhcCCCC
Confidence 3556666776644333 11 2 5778899999999999999887442211 123345778887773
No 145
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.85 E-value=0.00056 Score=65.02 Aligned_cols=156 Identities=18% Similarity=0.222 Sum_probs=80.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCC
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESD 93 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 93 (864)
+...-+.+|||+|+||||||.-++++.... | .+++........++
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~---~~~sg~~i~k~~dl------------------------------ 92 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLARIIANELGVN--F---KITSGPAIEKAGDL------------------------------ 92 (233)
T ss_dssp S---EEEEESSTTSSHHHHHHHHHHHCT----E---EEEECCC--SCHHH------------------------------
T ss_pred CCcceEEEECCCccchhHHHHHHHhccCCC--e---EeccchhhhhHHHH------------------------------
Confidence 456789999999999999999999998765 2 23333221112222
Q ss_pred hhhHHHHHHHHHhcCCeEEEEEcCCCchh--c-------cccccC--CCCCCC----------CCcEEEEEeCChHHHhh
Q 002939 94 VPGRARKLYARLQKENKILVILDNIWEDL--D-------LEKVGV--PSGNDW----------RGCKVLLTARDRHVLGS 152 (864)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~-------~~~l~~--~~~~~~----------~gs~IivTtR~~~v~~~ 152 (864)
..+...+ +++-+|++|++.... + .+.... ....+. +=+-|=-|||...+...
T Consensus 93 -----~~il~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~p 165 (233)
T PF05496_consen 93 -----AAILTNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSP 165 (233)
T ss_dssp -----HHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHC
T ss_pred -----HHHHHhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchh
Confidence 1112222 234456667765431 1 111100 001110 11234457776544443
Q ss_pred cC---CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHHHHHhcc
Q 002939 153 IG---SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTLAKALRN 212 (864)
Q Consensus 153 ~~---~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~~~~l~~ 212 (864)
.. .-..+++..+.+|-.++..+.+.- -...-.++.+.+|++++.|-|--..-+-..++.
T Consensus 166 LrdRFgi~~~l~~Y~~~el~~Iv~r~a~~-l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvrD 227 (233)
T PF05496_consen 166 LRDRFGIVLRLEFYSEEELAKIVKRSARI-LNIEIDEDAAEEIARRSRGTPRIANRLLRRVRD 227 (233)
T ss_dssp CCTTSSEEEE----THHHHHHHHHHCCHC-TT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHCC
T ss_pred HHhhcceecchhcCCHHHHHHHHHHHHHH-hCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 33 345689999999999999886621 222334677889999999999866555444443
No 146
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.84 E-value=7.9e-06 Score=81.02 Aligned_cols=172 Identities=20% Similarity=0.243 Sum_probs=107.0
Q ss_pred cceEEEeecCCcc-CCCCCC-----cCCCceEEEecCCCCCCC--CC---------CchhhcCCCCceEEEEeccccccC
Q 002939 317 KCSTISLHGNNIS-EIPQGW-----ECPQLEFFYIFAPEDSPL--KI---------PDNIFMGMPKLKVLLFIRMRLLSL 379 (864)
Q Consensus 317 ~l~~L~l~~~~~~-~~~~~~-----~~~~L~~L~l~~~~~~~~--~~---------~~~~~~~l~~Lr~L~L~~~~i~~l 379 (864)
+++.++||.|.+. .-+..+ .+..|+.|++..+..... .. -......-+.||++...+|++..-
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 6777888877665 222221 567777777776433221 00 011124567788888888877644
Q ss_pred C-----cccccCCCccEEEecCcccccc------ccccccCcccEEeCCCCCCc-----cCchhhccccccceecccccc
Q 002939 380 P-----SSIRLLTDLRTLCLDGCKLEDI------RIIGELKELEILSLQGCDIE-----HLPREIGQLTQLKLLDLSYCF 443 (864)
Q Consensus 380 p-----~~~~~l~~L~~L~L~~~~l~~l------~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~ 443 (864)
+ ..|...+.|+.+.++.|.|..- ..+..+++|+.|||+.|-++ .+...+..+++|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 3 3456677888888888876531 45777888888888888665 344556677788888888885
Q ss_pred cccccCh-----hhhhcCcccceeecccccccc--------ccccCCcchhhhcCCCCc
Q 002939 444 ELKVIAP-----NVLSNLSQLEELYMATCCIKW--------EISNCSLLEEIVGKEGGV 489 (864)
Q Consensus 444 ~l~~~~~-----~~l~~l~~L~~L~l~~~~~~~--------~~~~~~~L~~L~~~~~~~ 489 (864)
++.--. ..-...++|+.|.+.+|.+.. .+...+.|..|++++|.+
T Consensus 253 -l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 -LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred -cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 443221 111235788888888887653 244455566666665544
No 147
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.84 E-value=0.00021 Score=79.01 Aligned_cols=156 Identities=12% Similarity=0.114 Sum_probs=92.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPG 96 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (864)
..+.|+|..|+|||.|++++++.......-..++|+++ .++..++...+.. .
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~----------------------~ 366 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRD----------------------G 366 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHh----------------------c
Confidence 46999999999999999999998764322245678764 3333444443311 0
Q ss_pred HHHHHHHHHhcCCeEEEEEcCCCchh---ccc-cccCCCCC-CCCCcEEEEEeCCh---------HHHhhcC-CceEEcC
Q 002939 97 RARKLYARLQKENKILVILDNIWEDL---DLE-KVGVPSGN-DWRGCKVLLTARDR---------HVLGSIG-SKTFQID 161 (864)
Q Consensus 97 ~~~~~~~~l~~~~~~LlvlDdv~~~~---~~~-~l~~~~~~-~~~gs~IivTtR~~---------~v~~~~~-~~~~~l~ 161 (864)
..+.+.+++. +-=+|||||++... .|+ .+...+.. ...|..|||||+.. .+..++. .-+++++
T Consensus 367 ~~~~f~~~y~--~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~ 444 (617)
T PRK14086 367 KGDSFRRRYR--EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQ 444 (617)
T ss_pred cHHHHHHHhh--cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcC
Confidence 1223334442 33588899996442 121 12111111 12355788888753 1222333 6778999
Q ss_pred CCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHH
Q 002939 162 VLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAI 203 (864)
Q Consensus 162 ~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~ 203 (864)
..+.+.-.+++.+.+.... -.--++++.-|++.+.+..-.+
T Consensus 445 ~PD~EtR~aIL~kka~~r~-l~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 445 PPELETRIAILRKKAVQEQ-LNAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred CCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHhccCCHHHH
Confidence 9999999999999884321 1222556667777766554433
No 148
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.84 E-value=0.00021 Score=84.40 Aligned_cols=169 Identities=11% Similarity=0.135 Sum_probs=94.4
Q ss_pred chHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccC----CCe-EEEEEccCCCChHHHHHHHHHHhCCccc
Q 002939 2 STLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDML----FDE-VVFAEVSETPDIGKIQGELADQLGMKFS 76 (864)
Q Consensus 2 ~~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~----f~~-~~~v~~~~~~~~~~~~~~i~~~l~~~~~ 76 (864)
.+++++++.|......-+.++|++|+||||+|+.++.+...... .+. ++.++++.-.. +.. .
T Consensus 194 ~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a------------g~~-~ 260 (852)
T TIGR03345 194 DEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA------------GAS-V 260 (852)
T ss_pred HHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc------------ccc-c
Confidence 35788888888777778889999999999999999998753311 112 22333221100 000 0
Q ss_pred cchhhhhccccccCCCChhhHHHHHHHHHh-cCCeEEEEEcCCCchh-------ccc---cccCCCCCCCCCcEEEEEeC
Q 002939 77 QGEIADQRGMKFSQESDVPGRARKLYARLQ-KENKILVILDNIWEDL-------DLE---KVGVPSGNDWRGCKVLLTAR 145 (864)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LlvlDdv~~~~-------~~~---~l~~~~~~~~~gs~IivTtR 145 (864)
.......+..+.+.+. .+++.+|++|++.... +-+ .+.+.+..+ .-++|-||.
T Consensus 261 --------------~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~IgaTT 324 (852)
T TIGR03345 261 --------------KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAATT 324 (852)
T ss_pred --------------chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEecC
Confidence 1112233334444443 2578999999986442 111 133333322 246666666
Q ss_pred ChHHHh-------hcC-CceEEcCCCCHHHHHHHHHHhhC---CCCCCCcchHHHHHHHHhcCCc
Q 002939 146 DRHVLG-------SIG-SKTFQIDVLNEEEAWTLFKKMTG---DCAEKGELNFVAIDITKECGGL 199 (864)
Q Consensus 146 ~~~v~~-------~~~-~~~~~l~~L~~~e~~~l~~~~~~---~~~~~~~~~~~~~~i~~~~~g~ 199 (864)
..+... ..+ ...+.+++++.++..++++.... ......-.++....+++.+.++
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 543211 111 46899999999999999765442 1111112234445566666543
No 149
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.0009 Score=75.71 Aligned_cols=187 Identities=14% Similarity=0.139 Sum_probs=98.4
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.++.|.+++..+++. .+.++|+.|+||||+|+.++.........+. .....-...+.|.. +......+..
T Consensus 24 v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~--g~~~d~~eid 94 (576)
T PRK14965 24 VSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITE--GRSVDVFEID 94 (576)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhc--CCCCCeeeee
Confidence 356677777777665 5689999999999999999988653221110 00000001111110 0000000000
Q ss_pred hhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeC-ChHHHhhcC
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTAR-DRHVLGSIG 154 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR-~~~v~~~~~ 154 (864)
+ ......+.++.+.+.+. .+++-++|+|+++... ..+.+...+........+|++|. ...+.....
T Consensus 95 ---~----~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~ 167 (576)
T PRK14965 95 ---G----ASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITIL 167 (576)
T ss_pred ---c----cCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHH
Confidence 0 00011112233333332 2455689999997553 34445444433333555665554 444444322
Q ss_pred --CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcch-HHHHH
Q 002939 155 --SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPI-AIVTL 206 (864)
Q Consensus 155 --~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-a~~~~ 206 (864)
...+++++++.++....+...+.... ..-.++....+++.++|..- |+..+
T Consensus 168 SRc~~~~f~~l~~~~i~~~L~~i~~~eg-i~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 168 SRCQRFDFRRIPLQKIVDRLRYIADQEG-ISISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HhhhhhhcCCCCHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 57889999999999888887663211 11224456678899988664 44444
No 150
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.0019 Score=72.70 Aligned_cols=184 Identities=15% Similarity=0.077 Sum_probs=97.6
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.++.+.+++..++.. .+.++|+.|+||||+|+.++........-+. ...+.-...+.+...... ...++.
T Consensus 24 v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-------~pC~~C~~C~~i~~g~~~--dv~eid 94 (559)
T PRK05563 24 ITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-------EPCNECEICKAITNGSLM--DVIEID 94 (559)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccHHHHHHhcCCCC--CeEEee
Confidence 355667777766554 5677999999999999999887653321111 001111111111111000 000000
Q ss_pred hhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEe-CChHHHhhcC
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTA-RDRHVLGSIG 154 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTt-R~~~v~~~~~ 154 (864)
. ......+.++.+.+... .++.-++|+|+++.. ..++.+...+........+|++| ....+.....
T Consensus 95 a-------as~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~ 167 (559)
T PRK05563 95 A-------ASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATIL 167 (559)
T ss_pred c-------cccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHH
Confidence 0 00011122333333332 256678999999755 33555554444333344555544 4333333222
Q ss_pred --CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHH
Q 002939 155 --SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAI 203 (864)
Q Consensus 155 --~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~ 203 (864)
...++..+++.++....+...+....- .-..+.+..|++.++|-+..+
T Consensus 168 SRc~~~~f~~~~~~ei~~~L~~i~~~egi-~i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 168 SRCQRFDFKRISVEDIVERLKYILDKEGI-EYEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred hHheEEecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 577899999999999988887632111 112345668888998877643
No 151
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.82 E-value=0.0016 Score=67.92 Aligned_cols=185 Identities=11% Similarity=0.084 Sum_probs=115.1
Q ss_pred chHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCcccc
Q 002939 2 STLKNVQNALL----DPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQ 77 (864)
Q Consensus 2 ~~~~~i~~~l~----~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~ 77 (864)
.+.+.+.+|+. .+..+-+.|.|-+|.|||.+...++.+......=-.++++++.+-....+++..|...+-....
T Consensus 157 ~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~- 235 (529)
T KOG2227|consen 157 LEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLV- 235 (529)
T ss_pred HHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhc-
Confidence 34555666664 3566899999999999999999999987754322356899999888888888888887721111
Q ss_pred chhhhhccccccCCCChhhHHHHHHHHHhcCC-eEEEEEcCCCchh--ccccccCCCCCC-CCCcEEEEEeCChH-----
Q 002939 78 GEIADQRGMKFSQESDVPGRARKLYARLQKEN-KILVILDNIWEDL--DLEKVGVPSGND-WRGCKVLLTARDRH----- 148 (864)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~LlvlDdv~~~~--~~~~l~~~~~~~-~~gs~IivTtR~~~----- 148 (864)
......+..+.+.++..+.+ -+|+|+|.+|... .-..+...|.+. .+++|+|+.---..
T Consensus 236 ------------s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 236 ------------SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred ------------CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 01223556667777776555 6899999987652 111222222221 23555555432111
Q ss_pred -HHhh----cC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCc
Q 002939 149 -VLGS----IG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGL 199 (864)
Q Consensus 149 -v~~~----~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 199 (864)
.+.. .. ...+..++-+.++..+++..+.......+.....++-+++++.|.
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~ 361 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAP 361 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccC
Confidence 1111 11 456788899999999999998854343333333444555555443
No 152
>PRK06620 hypothetical protein; Validated
Probab=97.80 E-value=9.7e-05 Score=72.01 Aligned_cols=132 Identities=14% Similarity=-0.039 Sum_probs=77.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPG 96 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (864)
+.+.|||++|+|||+|++.+++.... .++. ..+ . ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~---------------------------------~-~~- 80 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIF---------------------------------F-NE- 80 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhh---------------------------------h-ch-
Confidence 67999999999999999987765421 1211 000 0 00
Q ss_pred HHHHHHHHHhcCCeEEEEEcCCCchhccccccCCCCC-CCCCcEEEEEeCChHH-------HhhcC-CceEEcCCCCHHH
Q 002939 97 RARKLYARLQKENKILVILDNIWEDLDLEKVGVPSGN-DWRGCKVLLTARDRHV-------LGSIG-SKTFQIDVLNEEE 167 (864)
Q Consensus 97 ~~~~~~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~-~~~gs~IivTtR~~~v-------~~~~~-~~~~~l~~L~~~e 167 (864)
+.. +..-++++||++...+. .+...+.. ...|..||+|++.... ..++. ..+++++++++++
T Consensus 81 ------~~~--~~~d~lliDdi~~~~~~-~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~ 151 (214)
T PRK06620 81 ------EIL--EKYNAFIIEDIENWQEP-ALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDEL 151 (214)
T ss_pred ------hHH--hcCCEEEEeccccchHH-HHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHH
Confidence 011 12347888999743221 12111110 1246689999985422 12233 5589999999999
Q ss_pred HHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchH
Q 002939 168 AWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIA 202 (864)
Q Consensus 168 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 202 (864)
...++.+.+.... -.-.++...-|++++.|-.-.
T Consensus 152 ~~~~l~k~~~~~~-l~l~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 152 IKILIFKHFSISS-VTISRQIIDFLLVNLPREYSK 185 (214)
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHHccCCHHH
Confidence 9989888773211 122255666777777765443
No 153
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.00068 Score=69.87 Aligned_cols=183 Identities=14% Similarity=0.078 Sum_probs=98.0
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchh-
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEI- 80 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~- 80 (864)
..+++...+..++++ .+.++|+.|+||+++|..++...-.++....- ++ . . .....+-..+ .....
T Consensus 12 ~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~---~c----~---~-c~~~~~g~HP-D~~~i~ 79 (319)
T PRK08769 12 AYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAA---AQ----R---T-RQLIAAGTHP-DLQLVS 79 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCC---cc----h---H-HHHHhcCCCC-CEEEEe
Confidence 356677777777765 58899999999999999999876543211100 00 0 0 0011110000 00000
Q ss_pred --hhhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCCh-HHHh
Q 002939 81 --ADQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARDR-HVLG 151 (864)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~-~v~~ 151 (864)
.+..+.+.. ..-..+.++++.+.+. .+++-++|+|+++... .-+.+...+.....++.+|++|.+. .+..
T Consensus 80 ~~p~~~~~k~~-~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLp 158 (319)
T PRK08769 80 FIPNRTGDKLR-TEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPA 158 (319)
T ss_pred cCCCccccccc-ccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCch
Confidence 000000000 0001122233333333 2466799999998653 2333333333333356666666654 4444
Q ss_pred hcC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHH
Q 002939 152 SIG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVT 205 (864)
Q Consensus 152 ~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~ 205 (864)
... ...+.+.+.+.+++.+.+... + . ....+..++..++|.|.....
T Consensus 159 TIrSRCq~i~~~~~~~~~~~~~L~~~-~--~----~~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 159 TIRSRCQRLEFKLPPAHEALAWLLAQ-G--V----SERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred HHHhhheEeeCCCcCHHHHHHHHHHc-C--C----ChHHHHHHHHHcCCCHHHHHH
Confidence 332 688999999999999888763 1 1 122355789999999985543
No 154
>CHL00181 cbbX CbbX; Provisional
Probab=97.80 E-value=0.00037 Score=71.32 Aligned_cols=129 Identities=16% Similarity=0.130 Sum_probs=71.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPG 96 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (864)
..+.++|++|+||||+|+.+++.....+.-...-|+.++. .+ +...... .....
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g------------------~~~~~ 113 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIG------------------HTAPK 113 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhc------------------cchHH
Confidence 3588999999999999999988754322111111333331 11 2221100 01111
Q ss_pred HHHHHHHHHhcCCeEEEEEcCCCch-----------hccccccCCCCCCCCCcEEEEEeCChHHH----------hhcCC
Q 002939 97 RARKLYARLQKENKILVILDNIWED-----------LDLEKVGVPSGNDWRGCKVLLTARDRHVL----------GSIGS 155 (864)
Q Consensus 97 ~~~~~~~~l~~~~~~LlvlDdv~~~-----------~~~~~l~~~~~~~~~gs~IivTtR~~~v~----------~~~~~ 155 (864)
...+.+.. ..-+|++|+++.. +..+.+.........+.+||+++....+. .++ .
T Consensus 114 -~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~-~ 188 (287)
T CHL00181 114 -TKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRI-A 188 (287)
T ss_pred -HHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhC-C
Confidence 11222222 2248999999643 11222333333333455777777543332 112 4
Q ss_pred ceEEcCCCCHHHHHHHHHHhh
Q 002939 156 KTFQIDVLNEEEAWTLFKKMT 176 (864)
Q Consensus 156 ~~~~l~~L~~~e~~~l~~~~~ 176 (864)
..+.+++++.+|..+++...+
T Consensus 189 ~~i~F~~~t~~el~~I~~~~l 209 (287)
T CHL00181 189 NHVDFPDYTPEELLQIAKIML 209 (287)
T ss_pred ceEEcCCcCHHHHHHHHHHHH
Confidence 679999999999999999887
No 155
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.79 E-value=0.00026 Score=72.57 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=70.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhhH
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPGR 97 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (864)
-+.++|++|+||||+|+.++............-++.++. .+ +...+.. .... .
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g------------------~~~~-~ 112 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIG------------------HTAP-K 112 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcc------------------cchH-H
Confidence 688999999999999998888765432221112333321 11 2211110 0111 1
Q ss_pred HHHHHHHHhcCCeEEEEEcCCCch-----------hccccccCCCCCCCCCcEEEEEeCChHHHhhc--------C-Cce
Q 002939 98 ARKLYARLQKENKILVILDNIWED-----------LDLEKVGVPSGNDWRGCKVLLTARDRHVLGSI--------G-SKT 157 (864)
Q Consensus 98 ~~~~~~~l~~~~~~LlvlDdv~~~-----------~~~~~l~~~~~~~~~gs~IivTtR~~~v~~~~--------~-~~~ 157 (864)
...+.+.. ..-+|++|+++.. +..+.+...+.....+.+||.++.....-... . ...
T Consensus 113 ~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~ 189 (284)
T TIGR02880 113 TKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHH 189 (284)
T ss_pred HHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcE
Confidence 12222222 2358889999632 11233333333333455677766543221110 1 467
Q ss_pred EEcCCCCHHHHHHHHHHhhC
Q 002939 158 FQIDVLNEEEAWTLFKKMTG 177 (864)
Q Consensus 158 ~~l~~L~~~e~~~l~~~~~~ 177 (864)
+++++++.+|..+++.+.+.
T Consensus 190 i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 190 VDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred EEeCCcCHHHHHHHHHHHHH
Confidence 89999999999999998873
No 156
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.77 E-value=0.00036 Score=75.92 Aligned_cols=150 Identities=9% Similarity=0.091 Sum_probs=87.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPG 96 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (864)
..+.|+|+.|+|||+|++++++..... ...++|++. .++...+...+...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~---------------------- 191 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSG---------------------- 191 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcc----------------------
Confidence 578999999999999999999987643 234677763 23334444444210
Q ss_pred HHHHHHHHHhcCCeEEEEEcCCCchhcc----ccccCCCCC-CCCCcEEEEEeCCh-HH--------HhhcC-CceEEcC
Q 002939 97 RARKLYARLQKENKILVILDNIWEDLDL----EKVGVPSGN-DWRGCKVLLTARDR-HV--------LGSIG-SKTFQID 161 (864)
Q Consensus 97 ~~~~~~~~l~~~~~~LlvlDdv~~~~~~----~~l~~~~~~-~~~gs~IivTtR~~-~v--------~~~~~-~~~~~l~ 161 (864)
..+...+.. .+.-+|++||+...... +.+...+.. ...|..||+||... .. ..++. ...++++
T Consensus 192 ~~~~f~~~~--~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~ 269 (445)
T PRK12422 192 EMQRFRQFY--RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLH 269 (445)
T ss_pred hHHHHHHHc--ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecC
Confidence 112223323 24458889998654221 112111110 01355788888642 21 11222 4688999
Q ss_pred CCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCc
Q 002939 162 VLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGL 199 (864)
Q Consensus 162 ~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 199 (864)
+++.++..+++++.+.... ..-.++...-|++.+.+.
T Consensus 270 ~pd~e~r~~iL~~k~~~~~-~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 270 PLTKEGLRSFLERKAEALS-IRIEETALDFLIEALSSN 306 (445)
T ss_pred CCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCC
Confidence 9999999999998873221 112245555677766654
No 157
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.76 E-value=0.0015 Score=62.83 Aligned_cols=177 Identities=18% Similarity=0.212 Sum_probs=100.9
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCC
Q 002939 13 DPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQES 92 (864)
Q Consensus 13 ~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 92 (864)
.++.+++.|+|.-|.|||++.+......... +.++-+.-....+...+...++.++.... ..
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d---~~~~v~i~~~~~s~~~~~~ai~~~l~~~p---------------~~ 109 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNED---QVAVVVIDKPTLSDATLLEAIVADLESQP---------------KV 109 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCC---ceEEEEecCcchhHHHHHHHHHHHhccCc---------------cc
Confidence 3455799999999999999999555444322 22221222334566777788888876521 11
Q ss_pred ChhhHH----HHHHHHHhcCCe-EEEEEcCCCch--hcccccc--CCCCCC-CCCcEEEEEeCCh-------HHHhhcC-
Q 002939 93 DVPGRA----RKLYARLQKENK-ILVILDNIWED--LDLEKVG--VPSGND-WRGCKVLLTARDR-------HVLGSIG- 154 (864)
Q Consensus 93 ~~~~~~----~~~~~~l~~~~~-~LlvlDdv~~~--~~~~~l~--~~~~~~-~~gs~IivTtR~~-------~v~~~~~- 154 (864)
...... +.+..-..+++| ..+++|+..+. +..+.++ ..+... ..--+|+..-..+ .+....+
T Consensus 110 ~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~ 189 (269)
T COG3267 110 NVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQ 189 (269)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhh
Confidence 222222 333344446778 99999998544 2222221 111111 0011233333211 1111222
Q ss_pred -Cce-EEcCCCCHHHHHHHHHHhhCCCCCC-Ccc-hHHHHHHHHhcCCcchHHHHHH
Q 002939 155 -SKT-FQIDVLNEEEAWTLFKKMTGDCAEK-GEL-NFVAIDITKECGGLPIAIVTLA 207 (864)
Q Consensus 155 -~~~-~~l~~L~~~e~~~l~~~~~~~~~~~-~~~-~~~~~~i~~~~~g~Pla~~~~~ 207 (864)
... |++.|++.++...|++++.+..... +-+ ++....|.....|+|.++..++
T Consensus 190 R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 190 RIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred eEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 334 8999999999999999988322222 212 3455678899999999997665
No 158
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.74 E-value=0.00081 Score=66.06 Aligned_cols=179 Identities=18% Similarity=0.135 Sum_probs=106.0
Q ss_pred hHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeE-EEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEV-VFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~-~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.+.-+.+.+.....++..++||+|.|||+-|+.++...-..+.|..+ .=.++|.+..+.-+-..
T Consensus 44 vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~K--------------- 108 (346)
T KOG0989|consen 44 VVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREK--------------- 108 (346)
T ss_pred HHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhh---------------
Confidence 34455566666678999999999999999999999987766666443 34555554433210000
Q ss_pred hhccccccCCCChhhHHHHHHHHHh-cCCe-EEEEEcCCCch--hccccccCCCCCCCCCcEEEEEeCChHH-Hhhc-C-
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQ-KENK-ILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTARDRHV-LGSI-G- 154 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~~v-~~~~-~- 154 (864)
..+.........+... ..+. -.+|||+++.. +.|.++..........++.|+.+-+-+. .... .
T Consensus 109 ---------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SR 179 (346)
T KOG0989|consen 109 ---------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSR 179 (346)
T ss_pred ---------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhh
Confidence 0011111100000010 1233 48999999865 5688887666555555666655554332 2211 1
Q ss_pred CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcch-HHHHH
Q 002939 155 SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPI-AIVTL 206 (864)
Q Consensus 155 ~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-a~~~~ 206 (864)
...+..++|.+++...-++..+.... -.-.++..+.|++.++|--- |+.++
T Consensus 180 C~KfrFk~L~d~~iv~rL~~Ia~~E~-v~~d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 180 CQKFRFKKLKDEDIVDRLEKIASKEG-VDIDDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 56789999999999988888873211 11224456688898888544 44333
No 159
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.73 E-value=0.0004 Score=75.88 Aligned_cols=140 Identities=17% Similarity=0.227 Sum_probs=76.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcc---CCCeEEEEEccCCCChHHHHHHHHHHh-CCccccchhhhhccccccC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDM---LFDEVVFAEVSETPDIGKIQGELADQL-GMKFSQGEIADQRGMKFSQ 90 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~---~f~~~~~v~~~~~~~~~~~~~~i~~~l-~~~~~~~~~~~~~~~~~~~ 90 (864)
..+-+.++|++|+|||++|+++++...... ......|+.++... ++... +..
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e--------Ll~kyvGet---------------- 270 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE--------LLNKYVGET---------------- 270 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh--------hcccccchH----------------
Confidence 346799999999999999999999865321 11234455544321 00000 000
Q ss_pred CCChhhHHHHHHHHHhcCCeEEEEEcCCCchh---------c-----cccccCCCCC--CCCCcEEEEEeCChHHHh---
Q 002939 91 ESDVPGRARKLYARLQKENKILVILDNIWEDL---------D-----LEKVGVPSGN--DWRGCKVLLTARDRHVLG--- 151 (864)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~---------~-----~~~l~~~~~~--~~~gs~IivTtR~~~v~~--- 151 (864)
........+........+++.+|+||+++... + ...+...+.. ...+..||.||.......
T Consensus 271 e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpAL 350 (512)
T TIGR03689 271 ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAI 350 (512)
T ss_pred HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhh
Confidence 00011112222222223578999999997431 1 1122222221 112445555665443322
Q ss_pred -hc-C-CceEEcCCCCHHHHHHHHHHhhCC
Q 002939 152 -SI-G-SKTFQIDVLNEEEAWTLFKKMTGD 178 (864)
Q Consensus 152 -~~-~-~~~~~l~~L~~~e~~~l~~~~~~~ 178 (864)
+. + ...++++..+.++..++|..+..+
T Consensus 351 lRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 351 LRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 11 2 567899999999999999998743
No 160
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.73 E-value=0.00022 Score=74.82 Aligned_cols=130 Identities=16% Similarity=0.204 Sum_probs=81.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
...+.|||..|.|||.|++++++.......-..++|++ .++...+++.++..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~------se~f~~~~v~a~~~---------------------- 164 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT------SEDFTNDFVKALRD---------------------- 164 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc------HHHHHHHHHHHHHh----------------------
Confidence 57999999999999999999999987664434566754 33334444444421
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCchhc---cc-cccCCCCC-CCCCcEEEEEeCChH---------HHhhcC-CceEEc
Q 002939 96 GRARKLYARLQKENKILVILDNIWEDLD---LE-KVGVPSGN-DWRGCKVLLTARDRH---------VLGSIG-SKTFQI 160 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~~~~---~~-~l~~~~~~-~~~gs~IivTtR~~~---------v~~~~~-~~~~~l 160 (864)
+..++.++.. .-=++++||++-... |+ .+...+.. ...|..||+|++... +..++. .-++++
T Consensus 165 ~~~~~Fk~~y---~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I 241 (408)
T COG0593 165 NEMEKFKEKY---SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEI 241 (408)
T ss_pred hhHHHHHHhh---ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEee
Confidence 1122333322 233899999864321 11 11111111 112448999996432 222334 678999
Q ss_pred CCCCHHHHHHHHHHhh
Q 002939 161 DVLNEEEAWTLFKKMT 176 (864)
Q Consensus 161 ~~L~~~e~~~l~~~~~ 176 (864)
.+.+++....++.+.+
T Consensus 242 ~~Pd~e~r~aiL~kka 257 (408)
T COG0593 242 EPPDDETRLAILRKKA 257 (408)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999999977
No 161
>PTZ00202 tuzin; Provisional
Probab=97.73 E-value=0.00035 Score=72.71 Aligned_cols=150 Identities=15% Similarity=0.161 Sum_probs=90.1
Q ss_pred hHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccch
Q 002939 3 TLKNVQNALLD---PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGE 79 (864)
Q Consensus 3 ~~~~i~~~l~~---~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~ 79 (864)
+.+++...|.+ +..+++.|+|++|+|||||++.+..... ....+++.. +..++++.++.+||....
T Consensus 270 Ela~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~-----~~qL~vNpr---g~eElLr~LL~ALGV~p~--- 338 (550)
T PTZ00202 270 EESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG-----MPAVFVDVR---GTEDTLRSVVKALGVPNV--- 338 (550)
T ss_pred HHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC-----ceEEEECCC---CHHHHHHHHHHHcCCCCc---
Confidence 44555555643 3346999999999999999999996543 124444444 679999999999996322
Q ss_pred hhhhccccccCCCChhhHHHHHHHHHh----c-CCeEEEEEcCCCc--hh-ccccccCCCCCCCCCcEEEEEeCChHHHh
Q 002939 80 IADQRGMKFSQESDVPGRARKLYARLQ----K-ENKILVILDNIWE--DL-DLEKVGVPSGNDWRGCKVLLTARDRHVLG 151 (864)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~----~-~~~~LlvlDdv~~--~~-~~~~l~~~~~~~~~gs~IivTtR~~~v~~ 151 (864)
....+....|.+.+. . +++.+||+-=-.. .. -+.+. ..+.....-|.|++----+.+..
T Consensus 339 ------------~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 339 ------------EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred ------------ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcch
Confidence 122233333333333 3 6778888763211 10 11111 12222333456666554333222
Q ss_pred hc----CCceEEcCCCCHHHHHHHHHHhh
Q 002939 152 SI----GSKTFQIDVLNEEEAWTLFKKMT 176 (864)
Q Consensus 152 ~~----~~~~~~l~~L~~~e~~~l~~~~~ 176 (864)
.. .-..|-+++|+.++|.++..+..
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 11 14678999999999999988754
No 162
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.73 E-value=0.00024 Score=77.78 Aligned_cols=151 Identities=16% Similarity=0.128 Sum_probs=82.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
.+-|.++|++|+|||.+|+.+++..... .+-++++.-+ ... - .. ..
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~-----~~~l~~~~l~----------~~~----v--------------Ge-se 304 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLP-----LLRLDVGKLF----------GGI----V--------------GE-SE 304 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEEhHHhc----------ccc----c--------------Ch-HH
Confidence 4679999999999999999999987542 2233322110 000 0 01 12
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCchhc--------------cccccCCCCCCCCCcEEEEEeCChHHHh----h-cC-C
Q 002939 96 GRARKLYARLQKENKILVILDNIWEDLD--------------LEKVGVPSGNDWRGCKVLLTARDRHVLG----S-IG-S 155 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~~~~--------------~~~l~~~~~~~~~gs~IivTtR~~~v~~----~-~~-~ 155 (864)
.....+.+......+++|++|+++.... ...+...+.....+.-||.||......+ + .+ .
T Consensus 305 ~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD 384 (489)
T CHL00195 305 SRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFD 384 (489)
T ss_pred HHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCC
Confidence 2233444444446789999999974311 0011111111222334555775543222 1 12 5
Q ss_pred ceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcc
Q 002939 156 KTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLP 200 (864)
Q Consensus 156 ~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 200 (864)
..+.++.-+.++-.++|+.+..........+.....+++.+.|+-
T Consensus 385 ~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 385 EIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred eEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 778888889999999999887432211111112346677776653
No 163
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.72 E-value=6.1e-05 Score=79.72 Aligned_cols=60 Identities=18% Similarity=0.176 Sum_probs=47.9
Q ss_pred hHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHH
Q 002939 3 TLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQ 64 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 64 (864)
..+.+...|... +.|.++|++|+|||++|+++++.......|+.+.||.++..++..++.
T Consensus 183 ~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI 242 (459)
T PRK11331 183 TIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFI 242 (459)
T ss_pred HHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHh
Confidence 345566666543 588889999999999999999988766678889999999888776653
No 164
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.72 E-value=0.0011 Score=69.21 Aligned_cols=204 Identities=17% Similarity=0.168 Sum_probs=124.6
Q ss_pred chHHHHHHHhcCCCccEEEEEcCCCCcHHHHH-HHHHHHhhhccCCCeEEEEEccCC---CChHHHHHHHHHHhCCcccc
Q 002939 2 STLKNVQNALLDPDISIIGMYGMGGVGKTTLV-KEVARRAKKDMLFDEVVFAEVSET---PDIGKIQGELADQLGMKFSQ 77 (864)
Q Consensus 2 ~~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa-~~~~~~~~~~~~f~~~~~v~~~~~---~~~~~~~~~i~~~l~~~~~~ 77 (864)
+.+++|..||.+..-..|+|.||-|.||+.|+ .++.++.+ .+.+++|.+. .+-..+...++.++|-..-.
T Consensus 3 e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~PvF 76 (431)
T PF10443_consen 3 EAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFPVF 76 (431)
T ss_pred hHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCcch
Confidence 56889999999988899999999999999999 77776643 3888998753 45667777888887653210
Q ss_pred ------c---hhhh--hccccccCCCChhhHH--------HHHHH-------------------HHh--cCCeEEEEEcC
Q 002939 78 ------G---EIAD--QRGMKFSQESDVPGRA--------RKLYA-------------------RLQ--KENKILVILDN 117 (864)
Q Consensus 78 ------~---~~~~--~~~~~~~~~~~~~~~~--------~~~~~-------------------~l~--~~~~~LlvlDd 117 (864)
. +... -.|.+.+=..+.+.-+ ..+++ +|. ..++-+||+||
T Consensus 77 sw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVIdn 156 (431)
T PF10443_consen 77 SWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVIDN 156 (431)
T ss_pred HHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEEcc
Confidence 0 0000 0111111011111111 11111 111 12367999999
Q ss_pred CCch-----------hccccccCCCCCCCCCcEEEEEeCChHHHh----hcC---CceEEcCCCCHHHHHHHHHHhhCCC
Q 002939 118 IWED-----------LDLEKVGVPSGNDWRGCKVLLTARDRHVLG----SIG---SKTFQIDVLNEEEAWTLFKKMTGDC 179 (864)
Q Consensus 118 v~~~-----------~~~~~l~~~~~~~~~gs~IivTtR~~~v~~----~~~---~~~~~l~~L~~~e~~~l~~~~~~~~ 179 (864)
.... .+|..... . .+=..||++|-+..... ... .+.+.|...+.+.|..|...+....
T Consensus 157 F~~k~~~~~~iy~~laeWAa~Lv---~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 157 FLHKAEENDFIYDKLAEWAASLV---Q-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred hhccCcccchHHHHHHHHHHHHH---h-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 7432 23433221 1 12347888887654433 332 4667899999999999999887332
Q ss_pred CCC-------------------CcchHHHHHHHHhcCCcchHHHHHHHHhccCCC
Q 002939 180 AEK-------------------GELNFVAIDITKECGGLPIAIVTLAKALRNKSC 215 (864)
Q Consensus 180 ~~~-------------------~~~~~~~~~i~~~~~g~Pla~~~~~~~l~~~~~ 215 (864)
... ..........++..||=-.-+..+++.++...+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~ 287 (431)
T PF10443_consen 233 TEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGES 287 (431)
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCC
Confidence 100 123344557788889998889888888887544
No 165
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.71 E-value=0.00075 Score=70.88 Aligned_cols=158 Identities=15% Similarity=0.080 Sum_probs=83.6
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.++.+...+..++++ ...++|+.|+||||+|+.+++..-........ .+... ...+.+......
T Consensus 14 ~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C--------~~c~~~~~~~hp---- 78 (329)
T PRK08058 14 VVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTC--------TNCKRIDSGNHP---- 78 (329)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcC--------HHHHHHhcCCCC----
Confidence 355666666666655 56899999999999999998876433211110 00000 000111000000
Q ss_pred hhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCChH-HHhhcC
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARDRH-VLGSIG 154 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~~-v~~~~~ 154 (864)
+.......+..-..+.++.+.+.+. .+++-++|+|+++... ..+.+...+.....++.+|++|.+.. +.....
T Consensus 79 D~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIr 158 (329)
T PRK08058 79 DVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTIL 158 (329)
T ss_pred CEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHH
Confidence 0000000000001122222333332 2456689999987553 34455555544445667777776643 333222
Q ss_pred --CceEEcCCCCHHHHHHHHHHh
Q 002939 155 --SKTFQIDVLNEEEAWTLFKKM 175 (864)
Q Consensus 155 --~~~~~l~~L~~~e~~~l~~~~ 175 (864)
...+++.+++.++..+.+...
T Consensus 159 SRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 159 SRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred hhceeeeCCCCCHHHHHHHHHHc
Confidence 688999999999998888753
No 166
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.70 E-value=0.00035 Score=81.95 Aligned_cols=146 Identities=14% Similarity=0.208 Sum_probs=85.3
Q ss_pred chHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccC---C-CeEEE-EEccCCCChHHHHHHHHHHhCCccc
Q 002939 2 STLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDML---F-DEVVF-AEVSETPDIGKIQGELADQLGMKFS 76 (864)
Q Consensus 2 ~~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~---f-~~~~~-v~~~~~~~~~~~~~~i~~~l~~~~~ 76 (864)
.+++++++.|......-+.++|++|+|||++|+.+++......- + +..+| ++++ .+ ... .. -
T Consensus 189 ~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~------~l----~a~--~~-~ 255 (731)
T TIGR02639 189 DELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG------SL----LAG--TK-Y 255 (731)
T ss_pred HHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH------HH----hhh--cc-c
Confidence 35677888887776777889999999999999999998743211 1 23333 3211 11 100 00 0
Q ss_pred cchhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchh----------c-cccccCCCCCCCCCcEEEEEeC
Q 002939 77 QGEIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDL----------D-LEKVGVPSGNDWRGCKVLLTAR 145 (864)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~----------~-~~~l~~~~~~~~~gs~IivTtR 145 (864)
.......+..+.+.+...++.+|++|+++... + -+.+...+..+ .-++|-+|.
T Consensus 256 --------------~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt 319 (731)
T TIGR02639 256 --------------RGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTT 319 (731)
T ss_pred --------------cchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecC
Confidence 11233445555555554568899999986432 1 11222222221 235555555
Q ss_pred ChHHHh-------hc-CCceEEcCCCCHHHHHHHHHHhh
Q 002939 146 DRHVLG-------SI-GSKTFQIDVLNEEEAWTLFKKMT 176 (864)
Q Consensus 146 ~~~v~~-------~~-~~~~~~l~~L~~~e~~~l~~~~~ 176 (864)
..+... .. +-..++++..+.++..++++...
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 432211 11 14578999999999999998755
No 167
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.69 E-value=1.2e-05 Score=90.97 Aligned_cols=216 Identities=21% Similarity=0.196 Sum_probs=103.2
Q ss_pred cCCcceeecccccccccccccccCc-ccccCccEEEeecC-Cc-cccc---hhHHHHcccccEEEEEccc-ccccccccc
Q 002939 574 LPNLEELRLSNKKDITKIWQGQFPD-HLLNKLKVLAIEND-KS-EVLA---PDLLERFHNLVNLELADGS-YKELFSNEG 646 (864)
Q Consensus 574 l~~L~~L~l~~~~~~~~~~~~~~p~-~~~~~L~~L~l~~~-~~-~~~~---~~~~~~l~~L~~L~l~~~~-l~~~~~~~~ 646 (864)
+++|+.|.+.++..+.+.. ..+. ...++|+.|+++++ .. ...+ ......+++|+.|+++.+. ++ +.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is-----d~ 259 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT-----DI 259 (482)
T ss_pred CchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC-----ch
Confidence 6888888888886444311 0111 12567777777652 11 1111 1233456777777777443 43 22
Q ss_pred chhhhcccccccceeecCCCcCccccccccccccccccccCccEEEeeccccccc--ccCCccccCCccEEEEecCc---
Q 002939 647 QVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKN--LLPSSASFRCLTKLSVWCCE--- 721 (864)
Q Consensus 647 ~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~~L~~L~l~~c~--- 721 (864)
.+......+++|+.|.+.+|..++.- .-......+++|++|++++|..+++ +......+++|+.|.+..+.
T Consensus 260 ~l~~l~~~c~~L~~L~l~~c~~lt~~----gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~ 335 (482)
T KOG1947|consen 260 GLSALASRCPNLETLSLSNCSNLTDE----GLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCP 335 (482)
T ss_pred hHHHHHhhCCCcceEccCCCCccchh----HHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCc
Confidence 22333334667777776666654332 1112233466677777777666532 11112335555554433332
Q ss_pred Cceeeechhhhhhh-ccccEEEecCccchHHhhhccccccCcceeeccccC-eeecCccccccccccCCceeecCcccee
Q 002939 722 QLINLVTSSAAKNL-VQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLE-SLDLNRLQSLTTFCSANYTFKFPSLCYL 799 (864)
Q Consensus 722 ~l~~~~~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~c~~L~~l~~~~~~~~~~~L~~L 799 (864)
.++........... ..+..+.+.+|+++++......+ ..... .+.+.+|+.++ .........+.+++.|
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~--------~~~~~~~~~l~gc~~l~-~~l~~~~~~~~~l~~L 406 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG--------ISDLGLELSLRGCPNLT-ESLELRLCRSDSLRVL 406 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh--------ccCcchHHHhcCCcccc-hHHHHHhccCCccceE
Confidence 33333111111111 14556666666666555432221 11222 45566666663 2211122233346777
Q ss_pred ecccCCCccc
Q 002939 800 SVSACPKMKI 809 (864)
Q Consensus 800 ~i~~C~~l~~ 809 (864)
++..|...+.
T Consensus 407 ~l~~~~~~t~ 416 (482)
T KOG1947|consen 407 NLSDCRLVTD 416 (482)
T ss_pred ecccCccccc
Confidence 7777776554
No 168
>PRK08116 hypothetical protein; Validated
Probab=97.68 E-value=0.00011 Score=74.24 Aligned_cols=102 Identities=18% Similarity=0.204 Sum_probs=59.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPG 96 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (864)
..+.++|.+|+|||.||.++++....+ ...++|+++ .+++..+....... ...
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~~------~~ll~~i~~~~~~~-------------------~~~ 167 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNF------PQLLNRIKSTYKSS-------------------GKE 167 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEH------HHHHHHHHHHHhcc-------------------ccc
Confidence 468999999999999999999998754 344677763 33444444443211 011
Q ss_pred HHHHHHHHHhcCCeEEEEEcCCCc--hhcccc--ccCCCCC-CCCCcEEEEEeCCh
Q 002939 97 RARKLYARLQKENKILVILDNIWE--DLDLEK--VGVPSGN-DWRGCKVLLTARDR 147 (864)
Q Consensus 97 ~~~~~~~~l~~~~~~LlvlDdv~~--~~~~~~--l~~~~~~-~~~gs~IivTtR~~ 147 (864)
....+.+.+. +-. ||||||+.. ..+|.. +...+.. ..+|..+|+||...
T Consensus 168 ~~~~~~~~l~-~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 168 DENEIIRSLV-NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred cHHHHHHHhc-CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 1223444554 233 899999942 233322 2111111 12356789999743
No 169
>PHA00729 NTP-binding motif containing protein
Probab=97.67 E-value=0.00056 Score=65.82 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 4 LKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 4 ~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.+++++.+...+...|.|+|.+|+||||||..+++...
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35677777777777899999999999999999998753
No 170
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.66 E-value=6.8e-05 Score=68.66 Aligned_cols=100 Identities=22% Similarity=0.364 Sum_probs=53.0
Q ss_pred CCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccc-cCCCccEEEecCcccccc---ccccccCcccE
Q 002939 338 PQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIR-LLTDLRTLCLDGCKLEDI---RIIGELKELEI 413 (864)
Q Consensus 338 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~-~l~~L~~L~L~~~~l~~l---~~~~~l~~L~~ 413 (864)
.+...++++.|.... ++ .|..+++|.+|.|..|+|..+.+.+. -+++|+.|.|.+|+|..+ ..+..+++|++
T Consensus 42 d~~d~iDLtdNdl~~--l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccchhh--cc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 344555555433321 22 14566666666666666666643333 234566666666655544 44555666666
Q ss_pred EeCCCCCCccCc----hhhccccccceecccc
Q 002939 414 LSLQGCDIEHLP----REIGQLTQLKLLDLSY 441 (864)
Q Consensus 414 L~l~~~~i~~lp----~~~~~l~~L~~L~l~~ 441 (864)
|.+-+|.++.-. ..+..+++|++||..+
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 666666555332 1234455555555544
No 171
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.66 E-value=0.00011 Score=74.25 Aligned_cols=163 Identities=17% Similarity=0.220 Sum_probs=98.9
Q ss_pred chHHHHHHHhcCCC---ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccc
Q 002939 2 STLKNVQNALLDPD---ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQG 78 (864)
Q Consensus 2 ~~~~~i~~~l~~~~---~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~ 78 (864)
++++.+...+-+.. +..|.|+|.+|.|||.+.+++.+....+ .+|+++-+.++.+.+...|+.+++....+.
T Consensus 13 ~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~-----~vw~n~~ecft~~~lle~IL~~~~~~d~dg 87 (438)
T KOG2543|consen 13 SQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE-----NVWLNCVECFTYAILLEKILNKSQLADKDG 87 (438)
T ss_pred HHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc-----ceeeehHHhccHHHHHHHHHHHhccCCCch
Confidence 45666666665533 3466899999999999999999988443 689999999999999999999986221110
Q ss_pred hhhhhccccccCCCChhhHHHHHHHH--Hh-cCCeEEEEEcCCCchhccccccCCC------CCCCCCcEEEEEeCChH-
Q 002939 79 EIADQRGMKFSQESDVPGRARKLYAR--LQ-KENKILVILDNIWEDLDLEKVGVPS------GNDWRGCKVLLTARDRH- 148 (864)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~--l~-~~~~~LlvlDdv~~~~~~~~l~~~~------~~~~~gs~IivTtR~~~- 148 (864)
. .... ..+...+.+..+.++ .. .++.++||+|+++...|.++..-+. ....+ .-+|+++-...
T Consensus 88 ~---~~~~---~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~-~i~iils~~~~e 160 (438)
T KOG2543|consen 88 D---KVEG---DAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEP-TIVIILSAPSCE 160 (438)
T ss_pred h---hhhh---HHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCC-ceEEEEeccccH
Confidence 0 0000 001122223333331 11 1468999999998776655432100 00112 23444443321
Q ss_pred -HHh-hcC---CceEEcCCCCHHHHHHHHHHhh
Q 002939 149 -VLG-SIG---SKTFQIDVLNEEEAWTLFKKMT 176 (864)
Q Consensus 149 -v~~-~~~---~~~~~l~~L~~~e~~~l~~~~~ 176 (864)
.-. .++ ..++..+.-+.+|...++.+-.
T Consensus 161 ~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 161 KQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred HHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 111 234 3456788889999999887743
No 172
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.64 E-value=8.8e-06 Score=92.15 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=37.0
Q ss_pred EEEecCccchH-HhhhccccccCcceeeccccCeeecCccccccccccCCceeecCccceeecccCCCcccc
Q 002939 740 TMKVDGCSKIT-ELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFCSANYTFKFPSLCYLSVSACPKMKIF 810 (864)
Q Consensus 740 ~L~l~~c~~l~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~l 810 (864)
.+.+.+|+.++ .+. .... .+.+++.|.++.|...+.-........+..++.+.+.+|+.+..-
T Consensus 380 ~~~l~gc~~l~~~l~--~~~~------~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 380 ELSLRGCPNLTESLE--LRLC------RSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred HHHhcCCcccchHHH--HHhc------cCCccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 45667777773 322 1111 234488888888877776433211111667788888888877654
No 173
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.64 E-value=0.0005 Score=73.53 Aligned_cols=149 Identities=17% Similarity=0.235 Sum_probs=83.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
..+.|.++|++|+|||++|+.+++..... | +.+..+ .+.. ..++ ..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~--f---i~i~~s------~l~~---k~~g--------------------e~ 223 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTAT--F---IRVVGS------EFVQ---KYLG--------------------EG 223 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCC--E---EEEehH------HHHH---Hhcc--------------------hh
Confidence 35789999999999999999999876432 2 222211 1100 0111 11
Q ss_pred hhHHHHHHHHHhcCCeEEEEEcCCCchh------------c----cccccCCCCC--CCCCcEEEEEeCChHHHh----h
Q 002939 95 PGRARKLYARLQKENKILVILDNIWEDL------------D----LEKVGVPSGN--DWRGCKVLLTARDRHVLG----S 152 (864)
Q Consensus 95 ~~~~~~~~~~l~~~~~~LlvlDdv~~~~------------~----~~~l~~~~~~--~~~gs~IivTtR~~~v~~----~ 152 (864)
......+........+.+|++|+++... . +..+...+.. ...+..||.||....... .
T Consensus 224 ~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR 303 (398)
T PTZ00454 224 PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLR 303 (398)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcC
Confidence 1223444455545678899999986431 0 1111111111 123557888887654332 1
Q ss_pred c-C-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCc
Q 002939 153 I-G-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGL 199 (864)
Q Consensus 153 ~-~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 199 (864)
. . ...++++..+.++..++|..+.....-.++. ...++++...|+
T Consensus 304 ~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~ 350 (398)
T PTZ00454 304 PGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKI 350 (398)
T ss_pred CCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCC
Confidence 1 2 5678999999999999998776332222211 133566666664
No 174
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.63 E-value=0.00052 Score=81.54 Aligned_cols=145 Identities=16% Similarity=0.271 Sum_probs=85.8
Q ss_pred chHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccC---C-CeEEE-EEccCCCChHHHHHHHHHHhCCccc
Q 002939 2 STLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDML---F-DEVVF-AEVSETPDIGKIQGELADQLGMKFS 76 (864)
Q Consensus 2 ~~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~---f-~~~~~-v~~~~~~~~~~~~~~i~~~l~~~~~ 76 (864)
.++++++++|.....+-+.++|++|+|||++|+.++.......- . +..+| +++ ..+ +...
T Consensus 186 ~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~------~~l-------~ag~-- 250 (821)
T CHL00095 186 KEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI------GLL-------LAGT-- 250 (821)
T ss_pred HHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH------HHH-------hccC--
Confidence 47888999998777677889999999999999999998653211 1 23344 221 111 1000
Q ss_pred cchhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchh---------cccccc-CCCCCCCCCcEEEEEeCC
Q 002939 77 QGEIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDL---------DLEKVG-VPSGNDWRGCKVLLTARD 146 (864)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~---------~~~~l~-~~~~~~~~gs~IivTtR~ 146 (864)
.+ .....+.+..+.+.+...++.+|++|++.... +...+. ..+..+ .-++|-+|..
T Consensus 251 ----------~~--~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~ 316 (821)
T CHL00095 251 ----------KY--RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTL 316 (821)
T ss_pred ----------CC--ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCH
Confidence 00 12233445555555555678999999985331 111222 222211 2366666665
Q ss_pred hHHHh------hc-C-CceEEcCCCCHHHHHHHHHHh
Q 002939 147 RHVLG------SI-G-SKTFQIDVLNEEEAWTLFKKM 175 (864)
Q Consensus 147 ~~v~~------~~-~-~~~~~l~~L~~~e~~~l~~~~ 175 (864)
.+... .. . ...+.++..+.++..++++..
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 54321 11 1 456788999999988887754
No 175
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.63 E-value=0.00019 Score=65.69 Aligned_cols=91 Identities=26% Similarity=0.164 Sum_probs=53.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
.+.+.|+|++|+||||+|+.++....... ..+++++.+........... ......... .....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------------~~~~~ 64 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKA--------------SGSGE 64 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCC--------------CCCHH
Confidence 36899999999999999999999876542 34777777654433222211 000100000 11222
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCchhc
Q 002939 96 GRARKLYARLQKENKILVILDNIWEDLD 123 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~~~~ 123 (864)
...+.+.......+..++++|+++....
T Consensus 65 ~~~~~~~~~~~~~~~~viiiDei~~~~~ 92 (148)
T smart00382 65 LRLRLALALARKLKPDVLILDEITSLLD 92 (148)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 2334444555433449999999976643
No 176
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0013 Score=66.14 Aligned_cols=159 Identities=19% Similarity=0.276 Sum_probs=93.7
Q ss_pred chHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHH
Q 002939 2 STLKNVQNALLD-------------PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELA 68 (864)
Q Consensus 2 ~~~~~i~~~l~~-------------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~ 68 (864)
+.+++|.+.+.- +..+-|.+||++|.|||-||++|++..... |+.+... +++
T Consensus 158 ~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-------FIrvvgS--------ElV 222 (406)
T COG1222 158 EQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-------FIRVVGS--------ELV 222 (406)
T ss_pred HHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-------EEEeccH--------HHH
Confidence 346666666641 356889999999999999999999987654 2332221 122
Q ss_pred H-HhCCccccchhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchh------------c----cccccCCC
Q 002939 69 D-QLGMKFSQGEIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDL------------D----LEKVGVPS 131 (864)
Q Consensus 69 ~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~------------~----~~~l~~~~ 131 (864)
+ .+| .......++++--+......|++|.+|... + .-.+..-+
T Consensus 223 qKYiG--------------------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql 282 (406)
T COG1222 223 QKYIG--------------------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL 282 (406)
T ss_pred HHHhc--------------------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhc
Confidence 2 222 123345566666666788999999886431 0 11111112
Q ss_pred CCC--CCCcEEEEEeCChHHHh----hcC--CceEEcCCCCHHHHHHHHHHhhCCC--CCCCcchHHHHHHHHhcCCc
Q 002939 132 GND--WRGCKVLLTARDRHVLG----SIG--SKTFQIDVLNEEEAWTLFKKMTGDC--AEKGELNFVAIDITKECGGL 199 (864)
Q Consensus 132 ~~~--~~gs~IivTtR~~~v~~----~~~--~~~~~l~~L~~~e~~~l~~~~~~~~--~~~~~~~~~~~~i~~~~~g~ 199 (864)
..+ ...-|||..|-...+.. +.+ .+.++++.-+.+.-.++|+-++..- .+.-+++ .+++.+.|.
T Consensus 283 DGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~ 356 (406)
T COG1222 283 DGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGF 356 (406)
T ss_pred cCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCC
Confidence 211 12358888887655544 223 7788888666666678888777322 2223333 566666665
No 177
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.59 E-value=0.00074 Score=75.61 Aligned_cols=149 Identities=18% Similarity=0.187 Sum_probs=82.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
.+-+.++|++|+|||++|+.++...... | +.++.+ ++ ..... .. ..
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~--~---~~i~~~------~~----~~~~~------------------g~-~~ 133 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVP--F---FSISGS------DF----VEMFV------------------GV-GA 133 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCC--e---eeccHH------HH----HHHHh------------------cc-cH
Confidence 3569999999999999999999875432 1 222211 11 11110 00 11
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCchhc----------------cccccCCCC--CCCCCcEEEEEeCChHHHh----hc
Q 002939 96 GRARKLYARLQKENKILVILDNIWEDLD----------------LEKVGVPSG--NDWRGCKVLLTARDRHVLG----SI 153 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs~IivTtR~~~v~~----~~ 153 (864)
.....+.+........+|++||++.... ...+...+. ....+-.||.||......+ +.
T Consensus 134 ~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~ 213 (495)
T TIGR01241 134 SRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRP 213 (495)
T ss_pred HHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcC
Confidence 2233444444445678999999965311 111111111 1123445666665543222 11
Q ss_pred -C-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcc
Q 002939 154 -G-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLP 200 (864)
Q Consensus 154 -~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 200 (864)
+ ...+.++..+.++-.++++.+........ +....++++.+.|+-
T Consensus 214 gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~--~~~l~~la~~t~G~s 260 (495)
T TIGR01241 214 GRFDRQVVVDLPDIKGREEILKVHAKNKKLAP--DVDLKAVARRTPGFS 260 (495)
T ss_pred CcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc--chhHHHHHHhCCCCC
Confidence 2 57789999999999999988874322211 122347788887743
No 178
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.57 E-value=0.00054 Score=73.82 Aligned_cols=129 Identities=21% Similarity=0.252 Sum_probs=74.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
..+.+.++|++|+|||++|+.+++..... | +.+..+. + .... ....
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~--f---i~V~~se------L----~~k~-------------------~Ge~ 261 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSAT--F---LRVVGSE------L----IQKY-------------------LGDG 261 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCC--E---EEEecch------h----hhhh-------------------cchH
Confidence 34678899999999999999999976432 2 2222111 1 1100 0001
Q ss_pred hhHHHHHHHHHhcCCeEEEEEcCCCchhc----------------cccccCCCCC--CCCCcEEEEEeCChHHHhh----
Q 002939 95 PGRARKLYARLQKENKILVILDNIWEDLD----------------LEKVGVPSGN--DWRGCKVLLTARDRHVLGS---- 152 (864)
Q Consensus 95 ~~~~~~~~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~~--~~~gs~IivTtR~~~v~~~---- 152 (864)
......+.+....+.+.+|+||+++.... +..+...+.. ...+.+||.||........
T Consensus 262 ~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlR 341 (438)
T PTZ00361 262 PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIR 341 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhcc
Confidence 12233344444446778899998753310 0011111110 1235578888876554432
Q ss_pred cC--CceEEcCCCCHHHHHHHHHHhhC
Q 002939 153 IG--SKTFQIDVLNEEEAWTLFKKMTG 177 (864)
Q Consensus 153 ~~--~~~~~l~~L~~~e~~~l~~~~~~ 177 (864)
.+ ...+++...+.++..++|..+..
T Consensus 342 pGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 342 PGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred CCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 12 56789999999999999998773
No 179
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00054 Score=76.82 Aligned_cols=167 Identities=20% Similarity=0.173 Sum_probs=102.0
Q ss_pred chHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhC
Q 002939 2 STLKNVQNALLDP---------DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLG 72 (864)
Q Consensus 2 ~~~~~i~~~l~~~---------~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 72 (864)
.++++++++|.++ -++-+.++|++|+|||-||++++-+..+- |+.++.. ++.+-+.
T Consensus 321 ~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS--------EFvE~~~ 385 (774)
T KOG0731|consen 321 EELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS--------EFVEMFV 385 (774)
T ss_pred HHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH--------HHHHHhc
Confidence 3677888888863 25789999999999999999999987764 3444432 1111111
Q ss_pred CccccchhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchhc-----------------cccccCCCCCCC
Q 002939 73 MKFSQGEIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDLD-----------------LEKVGVPSGNDW 135 (864)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~-----------------~~~l~~~~~~~~ 135 (864)
. .-....+.+....+......+.+|+++...- ++.+........
T Consensus 386 g-------------------~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 386 G-------------------VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred c-------------------cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 0 0123445566666667788999998764311 222222222222
Q ss_pred C-CcEEEE-EeCChHHHh----hcC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHH
Q 002939 136 R-GCKVLL-TARDRHVLG----SIG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAI 203 (864)
Q Consensus 136 ~-gs~Iiv-TtR~~~v~~----~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~ 203 (864)
. +..|++ +|....+.. +.+ +..+.++.-+.....++|..++....-..+..++++ ++....|++=|-
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 1 223444 444334433 223 678888888899999999998854333344455565 888888887543
No 180
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.55 E-value=7.6e-05 Score=68.38 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=34.3
Q ss_pred CceEEEEeccccccCCcccccCCCccEEEecCcccccc-cccc-ccCcccEEeCCCCCCccCc--hhhccccccceeccc
Q 002939 365 KLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDI-RIIG-ELKELEILSLQGCDIEHLP--REIGQLTQLKLLDLS 440 (864)
Q Consensus 365 ~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l-~~~~-~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~ 440 (864)
....+||++|.+..++ .|..+..|.+|.|..|+|+.+ +.+. .+++|..|.+.+|+|..+. ..+..++.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 3444555555554443 244445555555555555544 2222 2334555555555444331 123344444444444
Q ss_pred cc
Q 002939 441 YC 442 (864)
Q Consensus 441 ~~ 442 (864)
+|
T Consensus 122 ~N 123 (233)
T KOG1644|consen 122 GN 123 (233)
T ss_pred CC
Confidence 44
No 181
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.55 E-value=0.00062 Score=73.23 Aligned_cols=116 Identities=26% Similarity=0.295 Sum_probs=76.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC-CChHHHHHHHHHHhCCccccchhhhhccccccCCCChhh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET-PDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPG 96 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (864)
++.|.|+-++||||+++.+....... .+++..-+. .+...+ .+.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l-~d~----------------------------- 83 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIEL-LDL----------------------------- 83 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhH-HHH-----------------------------
Confidence 99999999999999996666554432 455443222 111111 111
Q ss_pred HHHHHHHHHhcCCeEEEEEcCCCchhccccccCCCCCCCCCcEEEEEeCChHHHh-----h-cC-CceEEcCCCCHHHHH
Q 002939 97 RARKLYARLQKENKILVILDNIWEDLDLEKVGVPSGNDWRGCKVLLTARDRHVLG-----S-IG-SKTFQIDVLNEEEAW 169 (864)
Q Consensus 97 ~~~~~~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~~-----~-~~-~~~~~l~~L~~~e~~ 169 (864)
...... +...++..+++|.|....+|......+.+.++. +|++|+-+..... . .+ ...+++-||+-.|..
T Consensus 84 -~~~~~~-~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl 160 (398)
T COG1373 84 -LRAYIE-LKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFL 160 (398)
T ss_pred -HHHHHH-hhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHH
Confidence 111111 111277899999999999999888777776555 7888887765443 1 22 677899999988887
Q ss_pred HH
Q 002939 170 TL 171 (864)
Q Consensus 170 ~l 171 (864)
.+
T Consensus 161 ~~ 162 (398)
T COG1373 161 KL 162 (398)
T ss_pred hh
Confidence 65
No 182
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.52 E-value=0.0034 Score=60.70 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=30.3
Q ss_pred HHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 8 QNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 8 ~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
..++......-+.+||..|+|||++++++.+....+
T Consensus 44 ~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 44 EQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred HHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 455556667789999999999999999999988765
No 183
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00041 Score=76.10 Aligned_cols=147 Identities=17% Similarity=0.206 Sum_probs=82.2
Q ss_pred chHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCcc
Q 002939 2 STLKNVQNALL------DPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKF 75 (864)
Q Consensus 2 ~~~~~i~~~l~------~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~ 75 (864)
..+|+|+++|. +-+.++++++||+|+|||.|++.+++-...+ | +-+.+..-.|..++
T Consensus 330 kVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEI------------ 392 (782)
T COG0466 330 KVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEI------------ 392 (782)
T ss_pred hHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHh------------
Confidence 46889999996 2345899999999999999999999987644 3 23333333332222
Q ss_pred ccchhhhhccccccCCCChhhHHHHHHHHHh--cCCeEEEEEcCCCchh------ccccccCCCCC-------------C
Q 002939 76 SQGEIADQRGMKFSQESDVPGRARKLYARLQ--KENKILVILDNIWEDL------DLEKVGVPSGN-------------D 134 (864)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~LlvlDdv~~~~------~~~~l~~~~~~-------------~ 134 (864)
.+.+- .+.+... . ++.+.+. +-+.-+++||.+|... .-.++...+.. .
T Consensus 393 -----RGHRR-TYIGamP-G----rIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~ 461 (782)
T COG0466 393 -----RGHRR-TYIGAMP-G----KIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVP 461 (782)
T ss_pred -----ccccc-cccccCC-h----HHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCc
Confidence 11000 0000111 1 2333333 2577899999987541 11111111110 0
Q ss_pred CCCcEEE-EEeCC-hH-HHh-hcC-CceEEcCCCCHHHHHHHHHHhh
Q 002939 135 WRGCKVL-LTARD-RH-VLG-SIG-SKTFQIDVLNEEEAWTLFKKMT 176 (864)
Q Consensus 135 ~~gs~Ii-vTtR~-~~-v~~-~~~-~~~~~l~~L~~~e~~~l~~~~~ 176 (864)
..=|.|+ |||-+ -+ +.. ..+ ..++++.+-+++|-.++-+++.
T Consensus 462 yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 462 YDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred cchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 1123333 44433 22 222 222 5899999999999998888776
No 184
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0026 Score=66.53 Aligned_cols=181 Identities=10% Similarity=0.050 Sum_probs=96.8
Q ss_pred HHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhh
Q 002939 4 LKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIAD 82 (864)
Q Consensus 4 ~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 82 (864)
-+++...+..+++. .+.++|+.|+||+++|..++.-.-..+..+.. .|..-.+ -+.+. . +..........
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~---~Cg~C~s----C~~~~-~-g~HPD~~~i~p 81 (334)
T PRK07993 11 YEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHK---SCGHCRG----CQLMQ-A-GTHPDYYTLTP 81 (334)
T ss_pred HHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCCCHH----HHHHH-c-CCCCCEEEEec
Confidence 46677777776654 66689999999999999998876432111100 0110000 00000 0 00000000000
Q ss_pred hccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCCh-HHHhhcC-
Q 002939 83 QRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARDR-HVLGSIG- 154 (864)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~-~v~~~~~- 154 (864)
..+.. .- ..+.++.+.+.+. .+++=++|+|+++... .-+.+...+.....++.+|++|.+. .+.....
T Consensus 82 ~~~~~---~I-~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 82 EKGKS---SL-GVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred ccccc---cC-CHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 00000 00 0112223333332 3577799999997653 3444444444334456666666654 3444322
Q ss_pred -CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHH
Q 002939 155 -SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAI 203 (864)
Q Consensus 155 -~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~ 203 (864)
...+.+.+++.+++.+.+....+ ...+.+..+++.++|.|...
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~~------~~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 158 RCRLHYLAPPPEQYALTWLSREVT------MSQDALLAALRLSAGAPGAA 201 (334)
T ss_pred ccccccCCCCCHHHHHHHHHHccC------CCHHHHHHHHHHcCCCHHHH
Confidence 67889999999999988866422 11233567889999999644
No 185
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0026 Score=67.05 Aligned_cols=144 Identities=22% Similarity=0.312 Sum_probs=87.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
+...+.+.|++|.|||+||.+++..-. |..+=.+.. +++ +| .++
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiSp------e~m-------iG-------------------~sE 580 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSD----FPFVKIISP------EDM-------IG-------------------LSE 580 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEeCh------HHc-------cC-------------------ccH
Confidence 346788899999999999999987643 655543321 111 11 111
Q ss_pred hh---HHHHHHHHHhcCCeEEEEEcCCCchhccccccCCCCC-------------CCCCcEE--EEEeCChHHHhhcC--
Q 002939 95 PG---RARKLYARLQKENKILVILDNIWEDLDLEKVGVPSGN-------------DWRGCKV--LLTARDRHVLGSIG-- 154 (864)
Q Consensus 95 ~~---~~~~~~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~-------------~~~gs~I--ivTtR~~~v~~~~~-- 154 (864)
.. .+..+.+.-.++.--.||+||+....+|-.+.+-+.. ...|-|. +-||..+.+...++
T Consensus 581 saKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~ 660 (744)
T KOG0741|consen 581 SAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGIL 660 (744)
T ss_pred HHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHH
Confidence 11 2223333333466689999999988888776543322 1234444 44666678888776
Q ss_pred ---CceEEcCCCCH-HHHHHHHHHhhCCCCCCCcchHHHHHHHHhc
Q 002939 155 ---SKTFQIDVLNE-EEAWTLFKKMTGDCAEKGELNFVAIDITKEC 196 (864)
Q Consensus 155 ---~~~~~l~~L~~-~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 196 (864)
...|.++.++. ++..+.+...- .....+.+..+++...++
T Consensus 661 ~~F~~~i~Vpnl~~~~~~~~vl~~~n--~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 661 DCFSSTIHVPNLTTGEQLLEVLEELN--IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred HhhhheeecCccCchHHHHHHHHHcc--CCCcchhHHHHHHHhccc
Confidence 56789999987 67777776642 122333444555555555
No 186
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.0037 Score=64.47 Aligned_cols=180 Identities=14% Similarity=0.072 Sum_probs=97.3
Q ss_pred HHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhh
Q 002939 4 LKNVQNALLDPDI-SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIAD 82 (864)
Q Consensus 4 ~~~i~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 82 (864)
.+++...+..+++ ..+.++|+.|+||+++|+.++.-.-..+.-+. .|..-. .-+.+.. +..........
T Consensus 12 ~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~----~Cg~C~----sC~~~~~--g~HPD~~~i~p 81 (319)
T PRK06090 12 WQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE----ACGFCH----SCELMQS--GNHPDLHVIKP 81 (319)
T ss_pred HHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCCH----HHHHHHc--CCCCCEEEEec
Confidence 4567777776665 47889999999999999999887543321000 011100 0000000 00000000000
Q ss_pred hccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCCh-HHHhhcC-
Q 002939 83 QRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARDR-HVLGSIG- 154 (864)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~-~v~~~~~- 154 (864)
.... ..-. .+.++.+.+.+. .+++=++|+|+++... ..+.+...+.....++.+|++|.+. .+.....
T Consensus 82 ~~~~---~~I~-vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 82 EKEG---KSIT-VEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred CcCC---CcCC-HHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 0000 0001 112233333332 2456689999997653 3555544444444456666666554 4544333
Q ss_pred -CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHH
Q 002939 155 -SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTL 206 (864)
Q Consensus 155 -~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~ 206 (864)
...+.+.+++.+++.+.+.....+ .+..+++.++|.|.....+
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~~~---------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 158 RCQQWVVTPPSTAQAMQWLKGQGIT---------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred cceeEeCCCCCHHHHHHHHHHcCCc---------hHHHHHHHcCCCHHHHHHH
Confidence 688999999999999988764211 1346788999999865433
No 187
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.47 E-value=0.0009 Score=69.36 Aligned_cols=108 Identities=11% Similarity=0.103 Sum_probs=67.2
Q ss_pred HHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCe-EEEEEccCC-CChHHHHHHHHHHhCCccccchhh
Q 002939 5 KNVQNALLD-PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDE-VVFAEVSET-PDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 5 ~~i~~~l~~-~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~~v~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.++++.+.- .+.+.+.|+|++|+|||||++++++..... +-+. ++|+-+.+. ..+.++++.+...+..........
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 455666652 344678999999999999999999987653 2344 467666654 568888888887665433210000
Q ss_pred hhccccccCCCChhhHHHHHHHHH-hcCCeEEEEEcCCCch
Q 002939 82 DQRGMKFSQESDVPGRARKLYARL-QKENKILVILDNIWED 121 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~LlvlDdv~~~ 121 (864)
. ..........+.+++ .++++++||+|++...
T Consensus 200 --~------~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 200 --E------HIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred --H------HHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 0 000111222333333 3589999999999654
No 188
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.023 Score=59.28 Aligned_cols=90 Identities=20% Similarity=0.178 Sum_probs=57.7
Q ss_pred CCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEeCC-hHHHhhcC--CceEEcCCCCHHHHHHHHHHhhCCCCCC
Q 002939 108 ENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTARD-RHVLGSIG--SKTFQIDVLNEEEAWTLFKKMTGDCAEK 182 (864)
Q Consensus 108 ~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~-~~v~~~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~ 182 (864)
+++-++|+|+++.. ...+.+...+.....++.+|++|.+ ..+..... ...+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~-~---- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG-V---- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC-C----
Confidence 45568899999765 3455555555444456666666555 44443322 6889999999999999987752 1
Q ss_pred CcchHHHHHHHHhcCCcchHHHHH
Q 002939 183 GELNFVAIDITKECGGLPIAIVTL 206 (864)
Q Consensus 183 ~~~~~~~~~i~~~~~g~Pla~~~~ 206 (864)
++ ....+..++|.|.....+
T Consensus 206 ~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred Ch----HHHHHHHcCCCHHHHHHH
Confidence 11 123577889999754433
No 189
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.001 Score=68.90 Aligned_cols=185 Identities=15% Similarity=0.124 Sum_probs=99.9
Q ss_pred hHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcc--------------CCCeEEEEEccCCCChHHHHHHH
Q 002939 3 TLKNVQNALLDPDI-SIIGMYGMGGVGKTTLVKEVARRAKKDM--------------LFDEVVFAEVSETPDIGKIQGEL 67 (864)
Q Consensus 3 ~~~~i~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~--------------~f~~~~~v~~~~~~~~~~~~~~i 67 (864)
.++.+...+.++++ ....++|+.|+||+++|..+++..-... |-|. .|+.-....+-..+-.+-
T Consensus 12 ~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl-~~i~p~~~~~g~~~~~~~ 90 (314)
T PRK07399 12 AIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDL-LWVEPTYQHQGKLITASE 90 (314)
T ss_pred HHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCE-EEEeccccccccccchhh
Confidence 45666777777765 7899999999999999999988764332 1222 232211000000000000
Q ss_pred HHHhCCccccchhhhhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEE
Q 002939 68 ADQLGMKFSQGEIADQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVL 141 (864)
Q Consensus 68 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~Ii 141 (864)
++..+.... .. ..-..+..+.+.+.+. .+++-++|+|+++... ..+++...+....++ .+|
T Consensus 91 ~~~~~~~~~-----------~~-~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~-~fI 157 (314)
T PRK07399 91 AEEAGLKRK-----------AP-PQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNG-TLI 157 (314)
T ss_pred hhhcccccc-----------cc-ccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCC-eEE
Confidence 011100000 00 0001122344544444 2567799999997653 344444433332333 455
Q ss_pred EEe-CChHHHhhcC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHH
Q 002939 142 LTA-RDRHVLGSIG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVT 205 (864)
Q Consensus 142 vTt-R~~~v~~~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~ 205 (864)
++| +...+..... ...+++.++++++..+.+.+...... .+.....++..++|.|..+..
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~----~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI----LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc----chhHHHHHHHHcCCCHHHHHH
Confidence 554 4444444332 68999999999999999998752111 111134788999999975543
No 190
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.46 E-value=0.00099 Score=63.52 Aligned_cols=158 Identities=18% Similarity=0.248 Sum_probs=93.9
Q ss_pred HHHHHhcCC------CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccch
Q 002939 6 NVQNALLDP------DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGE 79 (864)
Q Consensus 6 ~i~~~l~~~------~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~ 79 (864)
-|+++|.+. ..+-|..+|++|.|||.+|+++++...+- ++.+... .-|.+.+|
T Consensus 135 li~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp-------~l~vkat-------~liGehVG------- 193 (368)
T COG1223 135 LIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP-------LLLVKAT-------ELIGEHVG------- 193 (368)
T ss_pred HHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc-------eEEechH-------HHHHHHhh-------
Confidence 467778763 35799999999999999999999988764 2222211 11222221
Q ss_pred hhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCch--------------hccccccCCCC--CCCCCcEEEEE
Q 002939 80 IADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWED--------------LDLEKVGVPSG--NDWRGCKVLLT 143 (864)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~--------------~~~~~l~~~~~--~~~~gs~IivT 143 (864)
+....+.+++++-.+...+.+.+|.++-. +-.+++...+. ..+.|...|-.
T Consensus 194 -------------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 194 -------------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred -------------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 22334556666666678899999987643 11233332222 12346566666
Q ss_pred eCChHHHhhc---C-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCc
Q 002939 144 ARDRHVLGSI---G-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGL 199 (864)
Q Consensus 144 tR~~~v~~~~---~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 199 (864)
|...+.+... + ..-++..--+++|-.++++.++...+-.-+. ..+.++++.+|+
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~--~~~~~~~~t~g~ 318 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDA--DLRYLAAKTKGM 318 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcccc--CHHHHHHHhCCC
Confidence 6666555421 1 4566777778899999999888432211111 133556666554
No 191
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00098 Score=70.15 Aligned_cols=140 Identities=19% Similarity=0.184 Sum_probs=81.4
Q ss_pred hHHHHHHHhcCC--------C-ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCC
Q 002939 3 TLKNVQNALLDP--------D-ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGM 73 (864)
Q Consensus 3 ~~~~i~~~l~~~--------~-~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 73 (864)
|+|+|+++|.+. + .+-|.++|++|.|||-||++++-+..+- | |.....+|+.. .
T Consensus 315 ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFdEm------~----- 377 (752)
T KOG0734|consen 315 ELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFDEM------F----- 377 (752)
T ss_pred HHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchhhh------h-----
Confidence 689999999873 1 4689999999999999999999887764 2 22333333211 0
Q ss_pred ccccchhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchh----c---------cccccCCCCCCC-CCcE
Q 002939 74 KFSQGEIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDL----D---------LEKVGVPSGNDW-RGCK 139 (864)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~----~---------~~~l~~~~~~~~-~gs~ 139 (864)
........+.++..-+..-.+.|++|.+|... . ++.+......+. +...
T Consensus 378 -----------------VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGi 440 (752)
T KOG0734|consen 378 -----------------VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGI 440 (752)
T ss_pred -----------------hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCce
Confidence 01112344555666666788999999987541 1 222333333222 2234
Q ss_pred EEE-EeCChHHHh----hcC--CceEEcCCCCHHHHHHHHHHhh
Q 002939 140 VLL-TARDRHVLG----SIG--SKTFQIDVLNEEEAWTLFKKMT 176 (864)
Q Consensus 140 Iiv-TtR~~~v~~----~~~--~~~~~l~~L~~~e~~~l~~~~~ 176 (864)
|+| .|..++..+ +.+ +..+.++.-+..--.+++..+.
T Consensus 441 IvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 441 IVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred EEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 444 444444433 223 4555555555555556666655
No 192
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0096 Score=62.05 Aligned_cols=86 Identities=13% Similarity=0.083 Sum_probs=48.0
Q ss_pred CCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCChH-HHhhcC--CceEEcCCCCHHHHHHHHHHhhCCCCCC
Q 002939 108 ENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARDRH-VLGSIG--SKTFQIDVLNEEEAWTLFKKMTGDCAEK 182 (864)
Q Consensus 108 ~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~~-v~~~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~ 182 (864)
+++-++|+|+++..+ .-+.+...+.....+..+|++|.+.. +..... ...+.+.+++.+++.+.+... +. .
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~-~~---~ 187 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER-GV---A 187 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc-CC---C
Confidence 344455678886543 22222222222223455777777654 443322 688999999999999888764 11 1
Q ss_pred CcchHHHHHHHHhcCCcchH
Q 002939 183 GELNFVAIDITKECGGLPIA 202 (864)
Q Consensus 183 ~~~~~~~~~i~~~~~g~Pla 202 (864)
. . . ..+..++|-|+.
T Consensus 188 ~--~-~--~~l~~~~g~p~~ 202 (325)
T PRK08699 188 E--P-E--ERLAFHSGAPLF 202 (325)
T ss_pred c--H-H--HHHHHhCCChhh
Confidence 1 1 1 123567898854
No 193
>PRK08181 transposase; Validated
Probab=97.42 E-value=0.00033 Score=70.37 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=31.2
Q ss_pred HHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEc
Q 002939 9 NALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEV 54 (864)
Q Consensus 9 ~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~ 54 (864)
+|+.. ..-+.++|++|+|||.||..+++....+ ...++|+++
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~ 142 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRT 142 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeH
Confidence 45543 3569999999999999999999877543 234566653
No 194
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.002 Score=69.19 Aligned_cols=149 Identities=18% Similarity=0.246 Sum_probs=83.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
..+-|.++|++|+|||.||++++.+..+- | +.++.+ +|+... ....
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~vP--f-----~~isAp--------eivSGv-------------------SGES 267 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELGVP--F-----LSISAP--------EIVSGV-------------------SGES 267 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcCCc--e-----Eeecch--------hhhccc-------------------Cccc
Confidence 45789999999999999999999998764 2 222222 122222 1123
Q ss_pred hhHHHHHHHHHhcCCeEEEEEcCCCchhc-------------cccc---cCCCCCC-CCCcEEEE---EeCChHHHh---
Q 002939 95 PGRARKLYARLQKENKILVILDNIWEDLD-------------LEKV---GVPSGND-WRGCKVLL---TARDRHVLG--- 151 (864)
Q Consensus 95 ~~~~~~~~~~l~~~~~~LlvlDdv~~~~~-------------~~~l---~~~~~~~-~~gs~Iiv---TtR~~~v~~--- 151 (864)
...++++++.-.....+++++|+++-... ...+ +.-+... ..|-.|+| |+|...+-.
T Consensus 268 EkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLR 347 (802)
T KOG0733|consen 268 EKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALR 347 (802)
T ss_pred HHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHh
Confidence 44566777777677899999999874410 1111 1111111 12333333 444333222
Q ss_pred hcC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCc
Q 002939 152 SIG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGL 199 (864)
Q Consensus 152 ~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 199 (864)
+.+ .+-+.+.--++++-.++++..+..-.-...+ ...+|++...|+
T Consensus 348 RaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~--d~~qlA~lTPGf 395 (802)
T KOG0733|consen 348 RAGRFDREICLGVPSETAREEILRIICRGLRLSGDF--DFKQLAKLTPGF 395 (802)
T ss_pred ccccccceeeecCCchHHHHHHHHHHHhhCCCCCCc--CHHHHHhcCCCc
Confidence 223 5667777667777777777766211111111 123677777665
No 195
>PRK10536 hypothetical protein; Provisional
Probab=97.42 E-value=0.00065 Score=66.48 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=32.8
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEE
Q 002939 5 KNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVF 51 (864)
Q Consensus 5 ~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~ 51 (864)
..++.++.+. .+|.+.|++|+|||+||.+++.+.-..+.|+.++.
T Consensus 65 ~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 65 AHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred HHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 4456666654 59999999999999999999987543334555444
No 196
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.39 E-value=0.001 Score=74.80 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=30.4
Q ss_pred hHHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 3 TLKNVQNALLD-----PDISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 3 ~~~~i~~~l~~-----~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.++++..|+.+ ...+++.|+|++|+||||+++.++....
T Consensus 92 ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 92 KIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35566777764 2346799999999999999999998754
No 197
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.37 E-value=0.0013 Score=77.83 Aligned_cols=207 Identities=16% Similarity=0.163 Sum_probs=112.0
Q ss_pred hHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE---ccCCC---ChHHHHHHHHHHhCC
Q 002939 3 TLKNVQNALLD---PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAE---VSETP---DIGKIQGELADQLGM 73 (864)
Q Consensus 3 ~~~~i~~~l~~---~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~---~~~~~---~~~~~~~~i~~~l~~ 73 (864)
+++.|...+.+ ....++.|.|.+|||||+|+++|......+ +...+--. ..... ...+..++++.++..
T Consensus 8 ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~--~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~~ll~ 85 (849)
T COG3899 8 ELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ--RGYFIKGKFDQFERNIPLSPLVQAFRDLMGQLLS 85 (849)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc--ceeeeHhhcccccCCCchHHHHHHHHHHHHHHhh
Confidence 56666666653 456799999999999999999999987654 11111111 11111 233455555555522
Q ss_pred cccc-------------------c-hhhhhccccccC--------CCChhh-----HHHHHHHHHhcCCeEEEEEcCC-C
Q 002939 74 KFSQ-------------------G-EIADQRGMKFSQ--------ESDVPG-----RARKLYARLQKENKILVILDNI-W 119 (864)
Q Consensus 74 ~~~~-------------------~-~~~~~~~~~~~~--------~~~~~~-----~~~~~~~~l~~~~~~LlvlDdv-~ 119 (864)
.... . +........... ....+. ....+.....+.++.++|+||+ |
T Consensus 86 ~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~leDlhW 165 (849)
T COG3899 86 ESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLEDLHW 165 (849)
T ss_pred ccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEecccc
Confidence 1110 0 000000000000 001111 1223344444567999999999 3
Q ss_pred chhc----cccccCCCC---CCCCCcEEEEEeCCh--HHHhhcC-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHH
Q 002939 120 EDLD----LEKVGVPSG---NDWRGCKVLLTARDR--HVLGSIG-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVA 189 (864)
Q Consensus 120 ~~~~----~~~l~~~~~---~~~~gs~IivTtR~~--~v~~~~~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~ 189 (864)
-+.. ++.+..... ...+..-.+.|.+.. .+..... ...+.|.||+..+.-.+.....+.... ...+..
T Consensus 166 aD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~--~~~p~~ 243 (849)
T COG3899 166 ADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL--LPAPLL 243 (849)
T ss_pred cChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc--ccchHH
Confidence 2211 222221111 000111222333332 1111222 578999999999999999988754222 224567
Q ss_pred HHHHHhcCCcchHHHHHHHHhccC
Q 002939 190 IDITKECGGLPIAIVTLAKALRNK 213 (864)
Q Consensus 190 ~~i~~~~~g~Pla~~~~~~~l~~~ 213 (864)
..|+++..|+|+.+.-+-..+...
T Consensus 244 ~~i~~kt~GnPfFi~e~lk~l~~~ 267 (849)
T COG3899 244 ELIFEKTKGNPFFIEEFLKALYEE 267 (849)
T ss_pred HHHHHHhcCCCccHHHHHHHHHhC
Confidence 799999999999999888887664
No 198
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.36 E-value=0.0053 Score=57.67 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=43.0
Q ss_pred hHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChH
Q 002939 3 TLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIG 61 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 61 (864)
.++++.-+..+.+++-+.|.||+|+||||-+..+++..-....-+++.-+++|.+..+.
T Consensus 35 tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGID 93 (333)
T KOG0991|consen 35 TVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGID 93 (333)
T ss_pred HHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccH
Confidence 44555555567889999999999999999999999887654333556666666655443
No 199
>PRK08118 topology modulation protein; Reviewed
Probab=97.36 E-value=0.00012 Score=68.45 Aligned_cols=35 Identities=26% Similarity=0.482 Sum_probs=29.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhc-cCCCeEEE
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKD-MLFDEVVF 51 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~~ 51 (864)
+.|.|+|++|+||||+|+++++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999987653 35777776
No 200
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.34 E-value=0.0028 Score=75.65 Aligned_cols=146 Identities=13% Similarity=0.192 Sum_probs=83.7
Q ss_pred chHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCC----Ce-EEEEEccCCCChHHHHHHHHHHhCCccc
Q 002939 2 STLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLF----DE-VVFAEVSETPDIGKIQGELADQLGMKFS 76 (864)
Q Consensus 2 ~~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f----~~-~~~v~~~~~~~~~~~~~~i~~~l~~~~~ 76 (864)
.++++++..|......-+.++|++|+|||++|+.++.+....... .. ++.++++. + .. +...
T Consensus 180 ~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~------l----~a--~~~~- 246 (852)
T TIGR03346 180 EEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA------L----IA--GAKY- 246 (852)
T ss_pred HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH------H----hh--cchh-
Confidence 467888888877766788899999999999999999986432111 12 33333211 1 00 0000
Q ss_pred cchhhhhccccccCCCChhhHHHHHHHHHhc-CCeEEEEEcCCCchhc----------cccccCCCCCCCCCcEEEEEeC
Q 002939 77 QGEIADQRGMKFSQESDVPGRARKLYARLQK-ENKILVILDNIWEDLD----------LEKVGVPSGNDWRGCKVLLTAR 145 (864)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LlvlDdv~~~~~----------~~~l~~~~~~~~~gs~IivTtR 145 (864)
.......+..+.+.+.. +++.+|++|++..... -+.+...+.. + .-++|-+|.
T Consensus 247 --------------~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g-~i~~IgaTt 310 (852)
T TIGR03346 247 --------------RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-G-ELHCIGATT 310 (852)
T ss_pred --------------hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-C-ceEEEEeCc
Confidence 11223334444555532 4689999999864421 1222222221 1 235555555
Q ss_pred ChHHHh-------hcC-CceEEcCCCCHHHHHHHHHHhh
Q 002939 146 DRHVLG-------SIG-SKTFQIDVLNEEEAWTLFKKMT 176 (864)
Q Consensus 146 ~~~v~~-------~~~-~~~~~l~~L~~~e~~~l~~~~~ 176 (864)
..+.-. ..+ -..+.++..+.++..++++...
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 443311 111 4567899999999999888764
No 201
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00071 Score=73.86 Aligned_cols=147 Identities=18% Similarity=0.211 Sum_probs=82.5
Q ss_pred chHHHHHHHhcC------CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCcc
Q 002939 2 STLKNVQNALLD------PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKF 75 (864)
Q Consensus 2 ~~~~~i~~~l~~------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~ 75 (864)
+.+++|++++.- -+.++++++||+|+|||.+|+.++.-..-+ .+-+.+....|..++.-.=-
T Consensus 418 dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk-----FfRfSvGG~tDvAeIkGHRR------- 485 (906)
T KOG2004|consen 418 DVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK-----FFRFSVGGMTDVAEIKGHRR------- 485 (906)
T ss_pred HHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc-----eEEEeccccccHHhhcccce-------
Confidence 467899999962 355899999999999999999999876543 23344554444433211000
Q ss_pred ccchhhhhccccccCCCChhhHHHHHHHHHh--cCCeEEEEEcCCCchh------ccccccCCCCC-------------C
Q 002939 76 SQGEIADQRGMKFSQESDVPGRARKLYARLQ--KENKILVILDNIWEDL------DLEKVGVPSGN-------------D 134 (864)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~LlvlDdv~~~~------~~~~l~~~~~~-------------~ 134 (864)
.+.+.+ .. ++.+-|+ +-..-|+.+|.||... .-.++...+.. .
T Consensus 486 -----------TYVGAM--PG---kiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp 549 (906)
T KOG2004|consen 486 -----------TYVGAM--PG---KIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVP 549 (906)
T ss_pred -----------eeeccC--Ch---HHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccc
Confidence 000111 11 2333333 2466799999987551 11111111110 0
Q ss_pred CCCcEEEEEeCChHHH---h-hcC-CceEEcCCCCHHHHHHHHHHhh
Q 002939 135 WRGCKVLLTARDRHVL---G-SIG-SKTFQIDVLNEEEAWTLFKKMT 176 (864)
Q Consensus 135 ~~gs~IivTtR~~~v~---~-~~~-~~~~~l~~L~~~e~~~l~~~~~ 176 (864)
-.=|+|++...-..+. . ..+ ..++++.+-..+|-.++-+++.
T Consensus 550 ~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 550 VDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred cchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 1125665533322111 1 111 5789999999999888877765
No 202
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.30 E-value=0.0039 Score=74.10 Aligned_cols=146 Identities=13% Similarity=0.170 Sum_probs=84.0
Q ss_pred chHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccC-----CCeEEEEEccCCCChHHHHHHHHHHhCCccc
Q 002939 2 STLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDML-----FDEVVFAEVSETPDIGKIQGELADQLGMKFS 76 (864)
Q Consensus 2 ~~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~-----f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~ 76 (864)
.+++++++.|......-+.++|++|+|||++|+.++........ -..+++++++... . +.. .
T Consensus 185 ~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~----------a--g~~-~ 251 (857)
T PRK10865 185 EEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV----------A--GAK-Y 251 (857)
T ss_pred HHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhh----------h--ccc-h
Confidence 36788888888777778889999999999999999998643211 1123343333210 0 000 0
Q ss_pred cchhhhhccccccCCCChhhHHHHHHHHHh-cCCeEEEEEcCCCchh---------cccc-ccCCCCCCCCCcEEEEEeC
Q 002939 77 QGEIADQRGMKFSQESDVPGRARKLYARLQ-KENKILVILDNIWEDL---------DLEK-VGVPSGNDWRGCKVLLTAR 145 (864)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LlvlDdv~~~~---------~~~~-l~~~~~~~~~gs~IivTtR 145 (864)
.......+..+.+.+. .+++.+|++|++.... +... +.+.+..+ .-++|-+|.
T Consensus 252 --------------~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g--~l~~IgaTt 315 (857)
T PRK10865 252 --------------RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--ELHCVGATT 315 (857)
T ss_pred --------------hhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC--CCeEEEcCC
Confidence 1122333444444443 2578999999986542 1122 22333222 336666666
Q ss_pred ChHHHh-------hcC-CceEEcCCCCHHHHHHHHHHhh
Q 002939 146 DRHVLG-------SIG-SKTFQIDVLNEEEAWTLFKKMT 176 (864)
Q Consensus 146 ~~~v~~-------~~~-~~~~~l~~L~~~e~~~l~~~~~ 176 (864)
..+... ..+ -..+.+..-+.++...+++...
T Consensus 316 ~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 316 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 554311 111 3456677778899999887654
No 203
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.26 E-value=0.0021 Score=74.41 Aligned_cols=148 Identities=19% Similarity=0.253 Sum_probs=84.9
Q ss_pred chHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcc-CC---CeEEEEEccCCCChHHHHHHHHHHhCCcccc
Q 002939 2 STLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDM-LF---DEVVFAEVSETPDIGKIQGELADQLGMKFSQ 77 (864)
Q Consensus 2 ~~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~-~f---~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~ 77 (864)
.+++++++.|......-+.++|++|+|||++|+.++....... .+ +..+|.. +...+ .. +...
T Consensus 193 ~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la--G~~~-- 259 (758)
T PRK11034 193 KELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA--GTKY-- 259 (758)
T ss_pred HHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc--ccch--
Confidence 4677888888776556778999999999999999998754322 11 3334411 11111 00 0000
Q ss_pred chhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCch----------hccccccCCCCCCCCCcEEEEEeCCh
Q 002939 78 GEIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWED----------LDLEKVGVPSGNDWRGCKVLLTARDR 147 (864)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~----------~~~~~l~~~~~~~~~gs~IivTtR~~ 147 (864)
..+.......+.+.+.+.+..+|++|+++.. .+...+..++... ..-+||-+|...
T Consensus 260 -------------~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~ 325 (758)
T PRK11034 260 -------------RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_pred -------------hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChH
Confidence 1123344455555565556789999998643 1121122222211 123555555544
Q ss_pred HHHh-------hcC-CceEEcCCCCHHHHHHHHHHhh
Q 002939 148 HVLG-------SIG-SKTFQIDVLNEEEAWTLFKKMT 176 (864)
Q Consensus 148 ~v~~-------~~~-~~~~~l~~L~~~e~~~l~~~~~ 176 (864)
+... ..+ -..++++..+.++..++++...
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 3211 111 4579999999999999998764
No 204
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.24 E-value=0.00021 Score=67.40 Aligned_cols=38 Identities=29% Similarity=0.375 Sum_probs=27.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEc
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEV 54 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~ 54 (864)
+..-+.++|+.|+|||.||..+++....++ ..+.|+++
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g--~~v~f~~~ 83 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKG--YSVLFITA 83 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCC--cceeEeec
Confidence 346899999999999999999999876542 34667654
No 205
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.22 E-value=0.0013 Score=61.11 Aligned_cols=130 Identities=14% Similarity=0.137 Sum_probs=70.6
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhccCCC------------------eEEEEEccCCCChHHH
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKKDMLFD------------------EVVFAEVSETPDIGKI 63 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~------------------~~~~v~~~~~~~~~~~ 63 (864)
+++.+.+.+..++.+ .+.++|+.|+||+++|..+++..-...... -+.|+.-.....
T Consensus 5 ~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~---- 80 (162)
T PF13177_consen 5 IIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK---- 80 (162)
T ss_dssp HHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS----
T ss_pred HHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc----
Confidence 456667777777765 689999999999999999998765433221 122222221100
Q ss_pred HHHHHHHhCCccccchhhhhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCch--hccccccCCCCCCCCC
Q 002939 64 QGELADQLGMKFSQGEIADQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWED--LDLEKVGVPSGNDWRG 137 (864)
Q Consensus 64 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~g 137 (864)
.-..+..+.+.+++. .+++=++|+||++.. +..+++...+.....+
T Consensus 81 ----------------------------~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~ 132 (162)
T PF13177_consen 81 ----------------------------SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPEN 132 (162)
T ss_dssp ----------------------------SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTT
T ss_pred ----------------------------hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCC
Confidence 001122223333332 245678999999865 3355555444444457
Q ss_pred cEEEEEeCChH-HHhhc-C-CceEEcCCCC
Q 002939 138 CKVLLTARDRH-VLGSI-G-SKTFQIDVLN 164 (864)
Q Consensus 138 s~IivTtR~~~-v~~~~-~-~~~~~l~~L~ 164 (864)
+++|++|++.. +.... . ...+.++++|
T Consensus 133 ~~fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEEEEEECChHHChHHHHhhceEEecCCCC
Confidence 88888888765 33322 2 5667776654
No 206
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.18 E-value=0.0036 Score=73.83 Aligned_cols=149 Identities=15% Similarity=0.220 Sum_probs=84.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
.+-|.++|++|+|||++|+++++..... | +.+..++ +.... .....
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~--f---i~v~~~~----------l~~~~-------------------vGese 532 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGAN--F---IAVRGPE----------ILSKW-------------------VGESE 532 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCC--E---EEEehHH----------Hhhcc-------------------cCcHH
Confidence 4568999999999999999999986532 2 2222211 11110 01112
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCchhc--------------cccccCCCCC--CCCCcEEEEEeCChHHHh----hc-C
Q 002939 96 GRARKLYARLQKENKILVILDNIWEDLD--------------LEKVGVPSGN--DWRGCKVLLTARDRHVLG----SI-G 154 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~~~~--------------~~~l~~~~~~--~~~gs~IivTtR~~~v~~----~~-~ 154 (864)
..+..+.+........+|++|+++.... ...+...+.. ...+..||.||....... +. +
T Consensus 533 ~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgR 612 (733)
T TIGR01243 533 KAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGR 612 (733)
T ss_pred HHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCc
Confidence 2345555555556789999999864311 1112111111 122345555665544332 11 2
Q ss_pred -CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcc
Q 002939 155 -SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLP 200 (864)
Q Consensus 155 -~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 200 (864)
...+.++..+.++..++|+.+.......++. ....+++.+.|+-
T Consensus 613 fd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 613 FDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred cceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 5778899999999999998776332222211 1346777777754
No 207
>PRK06526 transposase; Provisional
Probab=97.16 E-value=0.00049 Score=68.88 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=24.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
...+.++|++|+|||+||..+......+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 4579999999999999999999886543
No 208
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.16 E-value=0.00018 Score=69.11 Aligned_cols=84 Identities=24% Similarity=0.320 Sum_probs=52.9
Q ss_pred ccCCCccEEEecCccccccccccccCcccEEeCCCC--CCc-cCchhhccccccceeccccccc--ccccChhhhhcCcc
Q 002939 384 RLLTDLRTLCLDGCKLEDIRIIGELKELEILSLQGC--DIE-HLPREIGQLTQLKLLDLSYCFE--LKVIAPNVLSNLSQ 458 (864)
Q Consensus 384 ~~l~~L~~L~L~~~~l~~l~~~~~l~~L~~L~l~~~--~i~-~lp~~~~~l~~L~~L~l~~~~~--l~~~~~~~l~~l~~ 458 (864)
..+..|+.|++.++.++.+..+-.|++|++|.++.| ++. .++.....+++|++|++++|.. ++.+.+ +.++.+
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcc
Confidence 344566666666667776666777777777777777 444 4555555667777777777751 233434 556666
Q ss_pred cceeecccccc
Q 002939 459 LEELYMATCCI 469 (864)
Q Consensus 459 L~~L~l~~~~~ 469 (864)
|..|++.+|..
T Consensus 118 L~~Ldl~n~~~ 128 (260)
T KOG2739|consen 118 LKSLDLFNCSV 128 (260)
T ss_pred hhhhhcccCCc
Confidence 77777666654
No 209
>PRK12377 putative replication protein; Provisional
Probab=97.16 E-value=0.0024 Score=63.35 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=30.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEcc
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVS 55 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~ 55 (864)
+...+.++|++|+|||+||.++++....+ ...++|+++.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~ 138 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP 138 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH
Confidence 34689999999999999999999988754 3346777653
No 210
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.15 E-value=0.0022 Score=64.32 Aligned_cols=99 Identities=23% Similarity=0.304 Sum_probs=58.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcc----CCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDM----LFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQE 91 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 91 (864)
..++.|+|++|+|||++|.+++....... ....++|++....++...+ .++++..+.... +..+. ......
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~--~~~~~--i~~~~~ 93 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPE--EVLDN--IYVARA 93 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChH--hHhcC--EEEEec
Confidence 47999999999999999999986533221 1257999998887776554 334444433211 11111 111111
Q ss_pred CC---hhhHHHHHHHHHhcC-CeEEEEEcCCC
Q 002939 92 SD---VPGRARKLYARLQKE-NKILVILDNIW 119 (864)
Q Consensus 92 ~~---~~~~~~~~~~~l~~~-~~~LlvlDdv~ 119 (864)
.+ .......+.+.+.+. +--+||+|.+.
T Consensus 94 ~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 94 YNSDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 11 223344555556555 66799999875
No 211
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.15 E-value=0.022 Score=60.48 Aligned_cols=70 Identities=24% Similarity=0.305 Sum_probs=47.4
Q ss_pred HHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhhhcc-CCCeEEEEEccCCCC----hHHHHHHHHHHhCC
Q 002939 4 LKNVQNALLD---PDISIIGMYGMGGVGKTTLVKEVARRAKKDM-LFDEVVFAEVSETPD----IGKIQGELADQLGM 73 (864)
Q Consensus 4 ~~~i~~~l~~---~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~-~f~~~~~v~~~~~~~----~~~~~~~i~~~l~~ 73 (864)
.+.|.+.+.+ +...+|+|.|.=|+||||+.+++.+...... .--.++|++.-.-.+ ...++.+|..++..
T Consensus 5 a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~~ 82 (325)
T PF07693_consen 5 AKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLEK 82 (325)
T ss_pred HHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHHH
Confidence 4667777775 4567999999999999999999999887651 112344555433322 45556666666644
No 212
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0038 Score=67.08 Aligned_cols=129 Identities=22% Similarity=0.335 Sum_probs=80.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
...-|.+||++|+|||-||++|+++.... |+.+.... + +-..+| ..
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGPE----L---lNkYVG--------------------ES 589 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGPE----L---LNKYVG--------------------ES 589 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCHH----H---HHHHhh--------------------hH
Confidence 35689999999999999999999997754 45554431 1 111111 11
Q ss_pred hhHHHHHHHHHhcCCeEEEEEcCCCchh-------------ccccccCCCCC--CCCCcEEEEEeCChHHHh----hcC-
Q 002939 95 PGRARKLYARLQKENKILVILDNIWEDL-------------DLEKVGVPSGN--DWRGCKVLLTARDRHVLG----SIG- 154 (864)
Q Consensus 95 ~~~~~~~~~~l~~~~~~LlvlDdv~~~~-------------~~~~l~~~~~~--~~~gs~IivTtR~~~v~~----~~~- 154 (864)
....+.++++-+....++|+||.++... -.+.+...+.. ...|.-||-.|-.+.+.. +.+
T Consensus 590 ErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGR 669 (802)
T KOG0733|consen 590 ERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGR 669 (802)
T ss_pred HHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCc
Confidence 2234556666666889999999986441 12233333322 234555665554444333 222
Q ss_pred -CceEEcCCCCHHHHHHHHHHhhC
Q 002939 155 -SKTFQIDVLNEEEAWTLFKKMTG 177 (864)
Q Consensus 155 -~~~~~l~~L~~~e~~~l~~~~~~ 177 (864)
.+..-+..-..+|-.++++....
T Consensus 670 lDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 670 LDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred cCceeeecCCCHHHHHHHHHHHhc
Confidence 56677777788888999988874
No 213
>PRK09183 transposase/IS protein; Provisional
Probab=97.14 E-value=0.0014 Score=66.02 Aligned_cols=36 Identities=31% Similarity=0.296 Sum_probs=26.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAE 53 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~ 53 (864)
...+.|+|++|+|||+||..++...... -..+.|++
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~--G~~v~~~~ 137 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRA--GIKVRFTT 137 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 3578899999999999999998875443 22344554
No 214
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0034 Score=68.67 Aligned_cols=157 Identities=18% Similarity=0.096 Sum_probs=88.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC--ChHHHHHHHHHHhCCccccchhhhhccccccCCCC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP--DIGKIQGELADQLGMKFSQGEIADQRGMKFSQESD 93 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 93 (864)
..-|.|.|+.|+|||+||+++++... +.....+.+++|+.-. ..+.+++.+..
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~------------------------ 485 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNN------------------------ 485 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHH------------------------
Confidence 35899999999999999999999988 4556678889988643 23322222221
Q ss_pred hhhHHHHHHHHHhcCCeEEEEEcCCCchh--------ccccc----cCCC----C-CCCCCcE--EEEEeCChHHHh---
Q 002939 94 VPGRARKLYARLQKENKILVILDNIWEDL--------DLEKV----GVPS----G-NDWRGCK--VLLTARDRHVLG--- 151 (864)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--------~~~~l----~~~~----~-~~~~gs~--IivTtR~~~v~~--- 151 (864)
.+.+.+ ....-+|||||++-.. +|... ...+ . ....+.+ +|-|.....-..
T Consensus 486 ------vfse~~-~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L 558 (952)
T KOG0735|consen 486 ------VFSEAL-WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLL 558 (952)
T ss_pred ------HHHHHH-hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhh
Confidence 122223 3678899999986331 12111 0000 0 0122334 444444432222
Q ss_pred -hcC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCc-chHHHH
Q 002939 152 -SIG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGL-PIAIVT 205 (864)
Q Consensus 152 -~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pla~~~ 205 (864)
... .....++.+...+-.++++............+++ .-++.+|.|+ |..+++
T Consensus 559 ~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dL-d~ls~~TEGy~~~DL~i 615 (952)
T KOG0735|consen 559 VSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDL-DFLSVKTEGYLATDLVI 615 (952)
T ss_pred cCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHH-HHHHHhcCCccchhHHH
Confidence 111 4567899999998888888776432222122222 2377888775 334433
No 215
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.12 E-value=0.011 Score=59.99 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHH
Q 002939 4 LKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQ 64 (864)
Q Consensus 4 ~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 64 (864)
++++..++..+ +-|.++|++|+|||++|+.++.... ...+.+++....+..+++
T Consensus 11 ~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 11 TSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHh
Confidence 34555555543 4677999999999999999987432 225566777665555443
No 216
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.09 E-value=0.00011 Score=62.66 Aligned_cols=90 Identities=19% Similarity=0.210 Sum_probs=58.2
Q ss_pred cCCCCceEEEEeccccccCCcccccC-CCccEEEecCcccccc-ccccccCcccEEeCCCCCCccCchhhccccccceec
Q 002939 361 MGMPKLKVLLFIRMRLLSLPSSIRLL-TDLRTLCLDGCKLEDI-RIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLD 438 (864)
Q Consensus 361 ~~l~~Lr~L~L~~~~i~~lp~~~~~l-~~L~~L~L~~~~l~~l-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~ 438 (864)
....+|...+|++|.++++|..|... +.+..|++++|.+.++ ..+..++.|+.|+++.|.+...|..+..|.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 45566666777777777777665433 3666677777766665 336666677777777777766676666667777777
Q ss_pred ccccccccccChh
Q 002939 439 LSYCFELKVIAPN 451 (864)
Q Consensus 439 l~~~~~l~~~~~~ 451 (864)
..++. ...++.+
T Consensus 130 s~~na-~~eid~d 141 (177)
T KOG4579|consen 130 SPENA-RAEIDVD 141 (177)
T ss_pred CCCCc-cccCcHH
Confidence 66665 4445443
No 217
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.06 E-value=0.0019 Score=66.55 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=60.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
..+-+.++|..|+|||.||.++++....+ -..+.|+++. ++..++...... ..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~--g~~v~~~~~~------~l~~~lk~~~~~------------------~~- 207 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKK--GVSSTLLHFP------EFIRELKNSISD------------------GS- 207 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEEEHH------HHHHHHHHHHhc------------------Cc-
Confidence 45689999999999999999999998743 2335666553 344455444321 11
Q ss_pred hhHHHHHHHHHhcCCeEEEEEcCCCch--hcccc--ccCCC-CCC-CCCcEEEEEeCC
Q 002939 95 PGRARKLYARLQKENKILVILDNIWED--LDLEK--VGVPS-GND-WRGCKVLLTARD 146 (864)
Q Consensus 95 ~~~~~~~~~~l~~~~~~LlvlDdv~~~--~~~~~--l~~~~-~~~-~~gs~IivTtR~ 146 (864)
.....+.+ .+-=||||||+... .+|.. +...+ ... ..+..+|+||--
T Consensus 208 ---~~~~l~~l--~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 208 ---VKEKIDAV--KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred ---HHHHHHHh--cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 12333444 35669999999533 34542 32222 222 234578888864
No 218
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.04 E-value=0.0032 Score=63.11 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=39.1
Q ss_pred HHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHh
Q 002939 6 NVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQL 71 (864)
Q Consensus 6 ~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l 71 (864)
.+.+++. +..-+.++|.+|+|||.||.++.++.. +.. -.+.+++ ..++..++....
T Consensus 97 ~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g-~sv~f~~------~~el~~~Lk~~~ 152 (254)
T COG1484 97 SLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-KAG-ISVLFIT------APDLLSKLKAAF 152 (254)
T ss_pred HHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-HcC-CeEEEEE------HHHHHHHHHHHH
Confidence 3444555 567899999999999999999999988 322 3455655 344555555554
No 219
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.04 E-value=0.0042 Score=73.01 Aligned_cols=35 Identities=31% Similarity=0.315 Sum_probs=27.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE 56 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 56 (864)
.++.++|++|+|||++|+.++.... ...+.+++++
T Consensus 485 ~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se 519 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSE 519 (731)
T ss_pred eeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCch
Confidence 4688999999999999999998763 3356677665
No 220
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.03 E-value=0.0049 Score=70.93 Aligned_cols=147 Identities=20% Similarity=0.243 Sum_probs=80.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPG 96 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (864)
+-|.++|++|+|||++|+.++...... | +.++.+.. .. + ..+ . ...
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~--f---~~is~~~~------~~-~--~~g-------------------~-~~~ 231 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVP--F---FTISGSDF------VE-M--FVG-------------------V-GAS 231 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCC--E---EEEehHHh------HH-h--hhc-------------------c-cHH
Confidence 459999999999999999998876543 2 33333211 00 0 000 0 011
Q ss_pred HHHHHHHHHhcCCeEEEEEcCCCchhc----------------cccccCCCCC--CCCCcEEEEEeCChHHHh----hcC
Q 002939 97 RARKLYARLQKENKILVILDNIWEDLD----------------LEKVGVPSGN--DWRGCKVLLTARDRHVLG----SIG 154 (864)
Q Consensus 97 ~~~~~~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~~--~~~gs~IivTtR~~~v~~----~~~ 154 (864)
....+..........+|++|+++.... ...+...+.. ...+.-||.||...+... ..+
T Consensus 232 ~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~Rpg 311 (644)
T PRK10733 232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPG 311 (644)
T ss_pred HHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCc
Confidence 222333334445778999999865411 1112111111 123445555776655433 112
Q ss_pred --CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCc
Q 002939 155 --SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGL 199 (864)
Q Consensus 155 --~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 199 (864)
...+.+..-+.++..++++.+.....-.++.+ ...+++.+.|+
T Consensus 312 Rfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d--~~~la~~t~G~ 356 (644)
T PRK10733 312 RFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID--AAIIARGTPGF 356 (644)
T ss_pred ccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCC--HHHHHhhCCCC
Confidence 57788888888888999888874332222221 22466666653
No 221
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.03 E-value=0.0031 Score=61.88 Aligned_cols=47 Identities=23% Similarity=0.329 Sum_probs=37.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHH
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQG 65 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~ 65 (864)
.+++.|+|++|+|||+++.+++...... ...++|++... ++...+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHH
Confidence 4799999999999999999988876543 46799999876 66655543
No 222
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.02 E-value=0.0046 Score=59.29 Aligned_cols=58 Identities=28% Similarity=0.333 Sum_probs=43.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC-CChHHHHHHHHHHhCCcc
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET-PDIGKIQGELADQLGMKF 75 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~~ 75 (864)
+++|.++|+.|+||||.+.+++.....+ -..+..++...- ....+.++..++.++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~ 59 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPF 59 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhcccc
Confidence 3689999999999999999999888765 345667776532 346667788888888664
No 223
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0046 Score=67.40 Aligned_cols=131 Identities=18% Similarity=0.251 Sum_probs=72.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCC
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESD 93 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 93 (864)
...+-|.++|++|+|||++|+.+++..... | +.++.. ++.... ..+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvkgp--------EL~sk~-------------------vGe 511 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVKGP--------ELFSKY-------------------VGE 511 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCC--e-----eeccCH--------HHHHHh-------------------cCc
Confidence 456899999999999999999999987654 3 233221 011000 011
Q ss_pred hhhHHHHHHHHHhcCCeEEEEEcCCCchhc-------------cccccCCCCCCCC-CcEEEEEeCCh-HHHh----hcC
Q 002939 94 VPGRARKLYARLQKENKILVILDNIWEDLD-------------LEKVGVPSGNDWR-GCKVLLTARDR-HVLG----SIG 154 (864)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~~~~~-gs~IivTtR~~-~v~~----~~~ 154 (864)
.+..+..++++-++-...++.||.+|.... +..+......... ...+|+...++ ...+ +.+
T Consensus 512 SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPG 591 (693)
T KOG0730|consen 512 SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPG 591 (693)
T ss_pred hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCc
Confidence 233445555555555668888887764311 1112121211111 22344433333 1111 222
Q ss_pred --CceEEcCCCCHHHHHHHHHHhhCC
Q 002939 155 --SKTFQIDVLNEEEAWTLFKKMTGD 178 (864)
Q Consensus 155 --~~~~~l~~L~~~e~~~l~~~~~~~ 178 (864)
++.+.++.=+.+...++|+.++..
T Consensus 592 RlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 592 RLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred ccceeEeecCccHHHHHHHHHHHHhc
Confidence 566777777777779999999843
No 224
>PRK06921 hypothetical protein; Provisional
Probab=97.00 E-value=0.0024 Score=64.60 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=30.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEc
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEV 54 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~ 54 (864)
....+.++|..|+|||+||.++++....+. ...++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH
Confidence 457899999999999999999999876431 244677764
No 225
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.00 E-value=0.0033 Score=73.52 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=32.4
Q ss_pred chHHHHHHHhcC------CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 2 STLKNVQNALLD------PDISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 2 ~~~~~i~~~l~~------~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
..+++|++++.. .+..++.++|++|+||||+|+.++....
T Consensus 329 ~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~ 374 (784)
T PRK10787 329 RVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG 374 (784)
T ss_pred HHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 357788888862 3456899999999999999999998654
No 226
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.99 E-value=0.0079 Score=59.91 Aligned_cols=56 Identities=25% Similarity=0.271 Sum_probs=39.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcc----CCCeEEEEEccCCCChHHHHHHHHHHh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDM----LFDEVVFAEVSETPDIGKIQGELADQL 71 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~~i~~~l 71 (864)
...++.|+|++|+|||++|.+++....... .-..++|++....++...+ ..+++..
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~~ 77 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERL-VQLAVRF 77 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHH-HHHHHHh
Confidence 347999999999999999999987754321 0156899998877776554 3344443
No 227
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.98 E-value=0.0064 Score=64.57 Aligned_cols=136 Identities=19% Similarity=0.178 Sum_probs=77.9
Q ss_pred hHHHHHHHhcC-CCccE-EEEEcCCCCcHHHHHHHHHHHhhhccC-------------------CCeEEEEEccCCCC--
Q 002939 3 TLKNVQNALLD-PDISI-IGMYGMGGVGKTTLVKEVARRAKKDML-------------------FDEVVFAEVSETPD-- 59 (864)
Q Consensus 3 ~~~~i~~~l~~-~~~~v-i~i~G~~G~GKTtLa~~~~~~~~~~~~-------------------f~~~~~v~~~~~~~-- 59 (864)
.+.++..+..+ .+.+. +.++|++|+||||+|..+++....... ...+..++.+....
T Consensus 9 ~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~ 88 (325)
T COG0470 9 AVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID 88 (325)
T ss_pred HHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc
Confidence 45666777763 44555 999999999999999999998764331 12334444444333
Q ss_pred -hHHHHHHHHHHhCCccccchhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchhc--cccccCCCCCCCC
Q 002939 60 -IGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDLD--LEKVGVPSGNDWR 136 (864)
Q Consensus 60 -~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~ 136 (864)
..+..+++.+....... .++.-++|+|+++.... -.++.........
T Consensus 89 i~~~~vr~~~~~~~~~~~------------------------------~~~~kviiidead~mt~~A~nallk~lEep~~ 138 (325)
T COG0470 89 IIVEQVRELAEFLSESPL------------------------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPK 138 (325)
T ss_pred chHHHHHHHHHHhccCCC------------------------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCC
Confidence 22333333332211100 25678999999986632 3333333333344
Q ss_pred CcEEEEEeCCh-HHHhhcC--CceEEcCCCCHHHH
Q 002939 137 GCKVLLTARDR-HVLGSIG--SKTFQIDVLNEEEA 168 (864)
Q Consensus 137 gs~IivTtR~~-~v~~~~~--~~~~~l~~L~~~e~ 168 (864)
..++|++|.+. .+..... ...+++.+.+..+.
T Consensus 139 ~~~~il~~n~~~~il~tI~SRc~~i~f~~~~~~~~ 173 (325)
T COG0470 139 NTRFILITNDPSKILPTIRSRCQRIRFKPPSRLEA 173 (325)
T ss_pred CeEEEEEcCChhhccchhhhcceeeecCCchHHHH
Confidence 56788888744 3333222 56777777444333
No 228
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.97 E-value=0.0015 Score=71.73 Aligned_cols=74 Identities=22% Similarity=0.291 Sum_probs=56.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
.-++..++|++|+||||||+-++++.. ..++=|++|...+...+-..|...+....-
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG-----YsVvEINASDeRt~~~v~~kI~~avq~~s~------------------ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG-----YSVVEINASDERTAPMVKEKIENAVQNHSV------------------ 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC-----ceEEEecccccccHHHHHHHHHHHHhhccc------------------
Confidence 347999999999999999999998754 247889999999988887777777643221
Q ss_pred hhHHHHHHHHH-hcCCeEEEEEcCCCch
Q 002939 95 PGRARKLYARL-QKENKILVILDNIWED 121 (864)
Q Consensus 95 ~~~~~~~~~~l-~~~~~~LlvlDdv~~~ 121 (864)
+ ..++..-||+|.++..
T Consensus 382 ----------l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 382 ----------LDADSRPVCLVIDEIDGA 399 (877)
T ss_pred ----------cccCCCcceEEEecccCC
Confidence 1 1267788899998765
No 229
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.97 E-value=7.9e-05 Score=63.62 Aligned_cols=110 Identities=16% Similarity=0.192 Sum_probs=83.9
Q ss_pred ceEEEeecCCccCCCCCC----cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEE
Q 002939 318 CSTISLHGNNISEIPQGW----ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLC 393 (864)
Q Consensus 318 l~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~ 393 (864)
+..++++++.+..++... ...+|...++++|. ..++|..+-...+.++.|++++|.+..+|..+..++.||.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~--fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG--FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccch--hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 444566666555444332 34456666776533 335777766677789999999999999999999999999999
Q ss_pred ecCcccccc-ccccccCcccEEeCCCCCCccCchhhc
Q 002939 394 LDGCKLEDI-RIIGELKELEILSLQGCDIEHLPREIG 429 (864)
Q Consensus 394 L~~~~l~~l-~~~~~l~~L~~L~l~~~~i~~lp~~~~ 429 (864)
++.|.+... ..+..|.+|-+|+..++.+..+|..+-
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~ 143 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLF 143 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCcHHHh
Confidence 999988776 567779999999999998888887643
No 230
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.96 E-value=0.0018 Score=63.11 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEc
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEV 54 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~ 54 (864)
.++|.|..|.||||++..+....... |+.+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~--f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHK--FDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhccc--CCEEEEEec
Confidence 68899999999999999999886654 877777654
No 231
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.96 E-value=0.0025 Score=63.49 Aligned_cols=98 Identities=22% Similarity=0.309 Sum_probs=58.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC-ChHHHHHHHHHHhCCccccchhhhhccccccC-CC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP-DIGKIQGELADQLGMKFSQGEIADQRGMKFSQ-ES 92 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~~ 92 (864)
+-+.++|.|.+|+|||||++++++....+ +-+.++++-+.+.. .+.++.+++...-.... .-+.... ++
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~--------tvvv~~t~d~ 138 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSK--------TALVYGQMNE 138 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcce--------eEEEEECCCC
Confidence 34689999999999999999999998764 23557777777654 34555555443211000 0000000 11
Q ss_pred Ch------hhHHHHHHHHHh-c-CCeEEEEEcCCCch
Q 002939 93 DV------PGRARKLYARLQ-K-ENKILVILDNIWED 121 (864)
Q Consensus 93 ~~------~~~~~~~~~~l~-~-~~~~LlvlDdv~~~ 121 (864)
.. ....-.+.++++ + ++.+|+|+||+...
T Consensus 139 ~~~~r~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 139 PPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 11 112234455554 3 89999999998654
No 232
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.95 E-value=0.003 Score=64.92 Aligned_cols=90 Identities=21% Similarity=0.235 Sum_probs=57.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
.-+++-|+|++|+||||||.+++...... -..++|++..+.++.. .+++++.... ..........
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~--------~l~v~~p~~~ 118 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDID--------NLLVSQPDTG 118 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHH--------HeEEecCCCH
Confidence 34799999999999999999988776543 3558899887665543 4566654322 1111222334
Q ss_pred hhHHHHHHHHHhcCCeEEEEEcCCC
Q 002939 95 PGRARKLYARLQKENKILVILDNIW 119 (864)
Q Consensus 95 ~~~~~~~~~~l~~~~~~LlvlDdv~ 119 (864)
++....+......+..-+||+|.+.
T Consensus 119 eq~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 119 EQALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHHHHHHHHhhccCCcEEEEcchh
Confidence 4444444444444566799999875
No 233
>PRK07261 topology modulation protein; Provisional
Probab=96.95 E-value=0.0036 Score=58.83 Aligned_cols=34 Identities=26% Similarity=0.518 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhc-cCCCeEEE
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKKD-MLFDEVVF 51 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~~ 51 (864)
.|.|+|++|+||||+|+++....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 58999999999999999998775321 13455555
No 234
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.95 E-value=0.03 Score=57.43 Aligned_cols=159 Identities=11% Similarity=0.071 Sum_probs=91.8
Q ss_pred hHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhh--------hccCCCeEEEEEccC-CCChHHHHHHHHHHhC
Q 002939 3 TLKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAK--------KDMLFDEVVFAEVSE-TPDIGKIQGELADQLG 72 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~--------~~~~f~~~~~v~~~~-~~~~~~~~~~i~~~l~ 72 (864)
.++.+.+.+..++.. +..++|..|.||+++|..+.+..- ...+-+.+.+++..+ ...++++ +++.+.+.
T Consensus 4 ~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~ 82 (299)
T PRK07132 4 WIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLY 82 (299)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhc
Confidence 456667777776665 555899999999999999998862 222222344443211 1222222 23333332
Q ss_pred CccccchhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchhc--cccccCCCCCCCCCcEEEEEeCC-hHH
Q 002939 73 MKFSQGEIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDLD--LEKVGVPSGNDWRGCKVLLTARD-RHV 149 (864)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~IivTtR~-~~v 149 (864)
... ..++++=++|+|+++...+ .+.+...+.....++.+|++|.+ ..+
T Consensus 83 ~~~-----------------------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kl 133 (299)
T PRK07132 83 FSS-----------------------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKV 133 (299)
T ss_pred cCC-----------------------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhC
Confidence 110 0024777888999865532 44455445444456666665544 444
Q ss_pred HhhcC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCC
Q 002939 150 LGSIG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGG 198 (864)
Q Consensus 150 ~~~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g 198 (864)
..... +..+++.++++++..+.+... + . .++.+..++...+|
T Consensus 134 l~TI~SRc~~~~f~~l~~~~l~~~l~~~-~--~----~~~~a~~~a~~~~~ 177 (299)
T PRK07132 134 LPTIVSRCQVFNVKEPDQQKILAKLLSK-N--K----EKEYNWFYAYIFSN 177 (299)
T ss_pred hHHHHhCeEEEECCCCCHHHHHHHHHHc-C--C----ChhHHHHHHHHcCC
Confidence 44322 688999999999998887764 1 1 12334455555665
No 235
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.01 Score=57.94 Aligned_cols=147 Identities=25% Similarity=0.291 Sum_probs=77.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHH-HhCCccccchhhhhccccccCCCCh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELAD-QLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~-~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
.+-|.++|++|.||+-||++|+.+.... |+.+|+. +++. .+|. .
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAnST-------FFSvSSS--------DLvSKWmGE--------------------S 210 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEANST-------FFSVSSS--------DLVSKWMGE--------------------S 210 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcCCc-------eEEeehH--------HHHHHHhcc--------------------H
Confidence 5899999999999999999999987632 3344432 1222 2221 1
Q ss_pred hhHHHHHHHHHhcCCeEEEEEcCCCchh---------cccccc-------CCCCCCCCCcEEEEEeCChHHHhhc---C-
Q 002939 95 PGRARKLYARLQKENKILVILDNIWEDL---------DLEKVG-------VPSGNDWRGCKVLLTARDRHVLGSI---G- 154 (864)
Q Consensus 95 ~~~~~~~~~~l~~~~~~LlvlDdv~~~~---------~~~~l~-------~~~~~~~~gs~IivTtR~~~v~~~~---~- 154 (864)
..+...+++--++++.-.|++|.|+... .-..+. .-......|.-|+-.|.-+-++... +
T Consensus 211 EkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRF 290 (439)
T KOG0739|consen 211 EKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRF 290 (439)
T ss_pred HHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHh
Confidence 2233444444556788899999886331 111111 1122223344444455544333321 1
Q ss_pred CceEEcCCCCHHH-HHHHHHHhhCCCCCCCcchHHHHHHHHhcCCc
Q 002939 155 SKTFQIDVLNEEE-AWTLFKKMTGDCAEKGELNFVAIDITKECGGL 199 (864)
Q Consensus 155 ~~~~~l~~L~~~e-~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 199 (864)
.+.+-+ +|.+.. -..+|+-+.++.+.. -.+.-.++++++..|+
T Consensus 291 ekRIYI-PLPe~~AR~~MF~lhlG~tp~~-LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 291 EKRIYI-PLPEAHARARMFKLHLGDTPHV-LTEQDFKELARKTEGY 334 (439)
T ss_pred hcceec-cCCcHHHhhhhheeccCCCccc-cchhhHHHHHhhcCCC
Confidence 233333 333344 456777777653322 2233445677776665
No 236
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.94 E-value=0.0059 Score=60.49 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=29.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEc
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEV 54 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~ 54 (864)
...+.++|.+|+|||+||.++++....+ -..++++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it~ 135 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIITV 135 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEH
Confidence 4589999999999999999999987654 245667653
No 237
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.94 E-value=0.0056 Score=55.95 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=37.9
Q ss_pred HHHHHHHhcCCeEEEEEcC----CCchhccccccCCCCCCCCCcEEEEEeCChHHHhhcCCceEE
Q 002939 99 RKLYARLQKENKILVILDN----IWEDLDLEKVGVPSGNDWRGCKVLLTARDRHVLGSIGSKTFQ 159 (864)
Q Consensus 99 ~~~~~~l~~~~~~LlvlDd----v~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~~~~~~~~~~ 159 (864)
..|.+.+. ++.-+++-|. +|....|+-+...-.-+..|..|+++|.+..+...+...++.
T Consensus 146 vaIARAiV-~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~ 209 (223)
T COG2884 146 VAIARAIV-NQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLA 209 (223)
T ss_pred HHHHHHHc-cCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEE
Confidence 34556665 7888999995 343334544322112234588999999999988877644433
No 238
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=7.1e-05 Score=71.82 Aligned_cols=100 Identities=22% Similarity=0.151 Sum_probs=68.6
Q ss_pred CCCceEEEEeccccccCCcccccCCCccEEEecCccccccccccccCcccEEeCCCCCCccCch--hhccccccceeccc
Q 002939 363 MPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDIRIIGELKELEILSLQGCDIEHLPR--EIGQLTQLKLLDLS 440 (864)
Q Consensus 363 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~ 440 (864)
+.+.+.|++.|+++..+. ....++.|++|.|+-|+|+.+..+..+++|++|+|+.|.|..+.+ -+.++++|+.|-|.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 445566777777776553 245677888888888888888888888888888888887776643 35677788888777
Q ss_pred ccccccccC----hhhhhcCcccceee
Q 002939 441 YCFELKVIA----PNVLSNLSQLEELY 463 (864)
Q Consensus 441 ~~~~l~~~~----~~~l~~l~~L~~L~ 463 (864)
.|.-...-+ ...+.-|++|++||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 765332222 23356677777776
No 239
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.91 E-value=0.0025 Score=66.25 Aligned_cols=37 Identities=24% Similarity=0.348 Sum_probs=30.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEcc
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVS 55 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~ 55 (864)
..+.++|+.|+|||+||.++++....+ -..++|+++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~--g~~V~y~t~~ 220 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRTAD 220 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEEHH
Confidence 789999999999999999999988654 2357777653
No 240
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.88 E-value=0.0037 Score=64.30 Aligned_cols=89 Identities=24% Similarity=0.253 Sum_probs=57.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
-+++-|+|++|+||||||.+++...... -..++|++..+.+++. .++.++.... ........+.+
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~--------~l~v~~p~~~e 119 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLD--------NLLISQPDTGE 119 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHH--------HheecCCCCHH
Confidence 4799999999999999999988776543 3568899987766643 4555654321 11122223344
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCC
Q 002939 96 GRARKLYARLQKENKILVILDNIW 119 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~ 119 (864)
+..+.+......+.--+||+|.|.
T Consensus 120 q~l~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 120 QALEIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHHHHHHHhccCCCEEEEcchH
Confidence 444444443444566799999874
No 241
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.00017 Score=66.32 Aligned_cols=90 Identities=13% Similarity=0.195 Sum_probs=67.6
Q ss_pred ccEEEEecCcCceeeechhhhhhhccccEEEecCccchHHhhhccccccCcceeeccccCeeecCccccccccccCCcee
Q 002939 712 LTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFCSANYTF 791 (864)
Q Consensus 712 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~ 791 (864)
++.++-++| .+... ....+..+++++.|.+.+|..+.+.....+++ .+|+|+.|+|++|+.+|+-.. .++.
T Consensus 103 IeaVDAsds-~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~------~~~~L~~L~lsgC~rIT~~GL-~~L~ 173 (221)
T KOG3864|consen 103 IEAVDASDS-SIMYE-GLEHLRDLRSIKSLSLANCKYFDDWCLERLGG------LAPSLQDLDLSGCPRITDGGL-ACLL 173 (221)
T ss_pred EEEEecCCc-hHHHH-HHHHHhccchhhhheeccccchhhHHHHHhcc------cccchheeeccCCCeechhHH-HHHH
Confidence 555555554 23222 24566778889999999999998887766665 689999999999999998765 3677
Q ss_pred ecCccceeecccCCCcccc
Q 002939 792 KFPSLCYLSVSACPKMKIF 810 (864)
Q Consensus 792 ~~~~L~~L~i~~C~~l~~l 810 (864)
.+++|+.|.+.+-|.+...
T Consensus 174 ~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 174 KLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred HhhhhHHHHhcCchhhhch
Confidence 8999999999887766543
No 242
>PRK04132 replication factor C small subunit; Provisional
Probab=96.86 E-value=0.02 Score=66.70 Aligned_cols=155 Identities=14% Similarity=0.043 Sum_probs=96.0
Q ss_pred Ec--CCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhhHHH
Q 002939 22 YG--MGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPGRAR 99 (864)
Q Consensus 22 ~G--~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (864)
.| |.++||||+|..++++.-.++.-..++-++++....+..+ +++++.......
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~----------------------- 625 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVI-REKVKEFARTKP----------------------- 625 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCC-----------------------
Confidence 37 8899999999999999754322234778888876665544 333332211000
Q ss_pred HHHHHHhcCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCChH-HHhhcC--CceEEcCCCCHHHHHHHHHH
Q 002939 100 KLYARLQKENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARDRH-VLGSIG--SKTFQIDVLNEEEAWTLFKK 174 (864)
Q Consensus 100 ~~~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~~-v~~~~~--~~~~~l~~L~~~e~~~l~~~ 174 (864)
+...+.-++|+|+++... ..+.+...+.......++|+++.+.. +..... +..+++.++++++....+..
T Consensus 626 -----~~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 626 -----IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred -----cCCCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHH
Confidence 011245799999998763 44555444433333557777666543 333322 68899999999999988887
Q ss_pred hhCCCCCCCcchHHHHHHHHhcCCcch-HHHHH
Q 002939 175 MTGDCAEKGELNFVAIDITKECGGLPI-AIVTL 206 (864)
Q Consensus 175 ~~~~~~~~~~~~~~~~~i~~~~~g~Pl-a~~~~ 206 (864)
.+.... -.-.++....|++.++|-+. |+..+
T Consensus 701 I~~~Eg-i~i~~e~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 701 IAENEG-LELTEEGLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred HHHhcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 662111 11124567789999999886 44333
No 243
>PRK09354 recA recombinase A; Provisional
Probab=96.85 E-value=0.0042 Score=64.36 Aligned_cols=89 Identities=21% Similarity=0.249 Sum_probs=59.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
-+++-|+|++|+||||||.+++...... -..++||+.-+.++. ..++.++.+... ......+...
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~-----~~a~~lGvdld~--------lli~qp~~~E 124 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP-----VYAKKLGVDIDN--------LLVSQPDTGE 124 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHH-----HHHHHcCCCHHH--------eEEecCCCHH
Confidence 4799999999999999999988776544 356899998877665 345666654221 1111223344
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCC
Q 002939 96 GRARKLYARLQKENKILVILDNIW 119 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~ 119 (864)
+..+.+...+..++--+||+|.|.
T Consensus 125 q~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 125 QALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHHHHHHhhcCCCCEEEEeChh
Confidence 444444444444566799999875
No 244
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.85 E-value=0.0068 Score=60.98 Aligned_cols=99 Identities=25% Similarity=0.308 Sum_probs=59.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhc----cCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKD----MLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQE 91 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 91 (864)
..+.=|+|++|+|||+|+.+++-..... +.-..++|++-...|..+.+. +|++..+... ++..+. +.....
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~--~~~l~~--I~v~~~ 112 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDP--EEILDN--IFVIRV 112 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-H--HHHHHT--EEEEE-
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcccccc--chhhhc--eeeeec
Confidence 3699999999999999999887664322 122459999999999888774 5666554321 111111 111122
Q ss_pred CChhh---HHHHHHHHHhcCCeEEEEEcCCC
Q 002939 92 SDVPG---RARKLYARLQKENKILVILDNIW 119 (864)
Q Consensus 92 ~~~~~---~~~~~~~~l~~~~~~LlvlDdv~ 119 (864)
.+..+ .+..+...+.+.+--|||+|.+.
T Consensus 113 ~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 113 FDLEELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred CCHHHHHHHHHHHHhhccccceEEEEecchH
Confidence 23332 33344444444566799999885
No 245
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.82 E-value=0.0039 Score=63.99 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=25.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
..+.++|||++|+|||.+|+.++.+....
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 45799999999999999999999998654
No 246
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.81 E-value=0.0011 Score=58.49 Aligned_cols=23 Identities=48% Similarity=0.641 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
+|+|.|++|+||||+|+++++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 247
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.78 E-value=0.0097 Score=70.43 Aligned_cols=40 Identities=28% Similarity=0.338 Sum_probs=30.9
Q ss_pred hHHHHHHHhcC------CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 3 TLKNVQNALLD------PDISIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 3 ~~~~i~~~l~~------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
.+++|.+++.. .+.+++.++|++|+|||++|+.+++....
T Consensus 328 ~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~ 373 (775)
T TIGR00763 328 VKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR 373 (775)
T ss_pred HHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45666666541 23468999999999999999999998753
No 248
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.011 Score=65.53 Aligned_cols=72 Identities=26% Similarity=0.339 Sum_probs=50.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
.+-|.+||++|.|||-+|++|+.+..-. |+.|..+.- +-..+| . .+
T Consensus 705 RSGILLYGPPGTGKTLlAKAVATEcsL~-------FlSVKGPEL-------LNMYVG-------------------q-SE 750 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVATECSLN-------FLSVKGPEL-------LNMYVG-------------------Q-SE 750 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHhhceee-------EEeecCHHH-------HHHHhc-------------------c-hH
Confidence 5689999999999999999999986643 556555421 111222 1 22
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCch
Q 002939 96 GRARKLYARLQKENKILVILDNIWED 121 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~~ 121 (864)
+-.++++++-+..+.++|+||.+|..
T Consensus 751 ~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 751 ENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHHHHHHhhccCCeEEEecccccc
Confidence 33456667777789999999998755
No 249
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.78 E-value=0.015 Score=69.51 Aligned_cols=40 Identities=38% Similarity=0.380 Sum_probs=30.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET 57 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~ 57 (864)
..++.++|+.|+|||++|+.++...... -...+.++++.-
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~ 634 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEY 634 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhh
Confidence 3578899999999999999999876432 234566776653
No 250
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.77 E-value=0.0097 Score=59.17 Aligned_cols=45 Identities=24% Similarity=0.377 Sum_probs=35.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHH
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKI 63 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 63 (864)
..++.|+|++|+|||++|.+++...... ...++|++.. .++...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH
Confidence 4699999999999999999998876543 4678999987 5555443
No 251
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.02 Score=54.47 Aligned_cols=128 Identities=21% Similarity=0.292 Sum_probs=71.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCC
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESD 93 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 93 (864)
.+.+-+.++|++|.|||-||+++++.-. +.|+.+|... +.+. .+|.
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht~-------c~firvsgse----lvqk---~ige-------------------- 224 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGSE----LVQK---YIGE-------------------- 224 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhhcc-------eEEEEechHH----HHHH---Hhhh--------------------
Confidence 4668899999999999999999998754 4566666531 1111 1110
Q ss_pred hhhHHHHHHHHHhcCCeEEEEEcCCCchhc-----------------cccccCCCCC--CCCCcEEEEEeCChHHHh---
Q 002939 94 VPGRARKLYARLQKENKILVILDNIWEDLD-----------------LEKVGVPSGN--DWRGCKVLLTARDRHVLG--- 151 (864)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~-----------------~~~l~~~~~~--~~~gs~IivTtR~~~v~~--- 151 (864)
.....++++--.+....-.+++|.++.... ++ +...+.. ..+.-+||..|..-.+..
T Consensus 225 gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmle-llnqldgfeatknikvimatnridild~al 303 (404)
T KOG0728|consen 225 GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLE-LLNQLDGFEATKNIKVIMATNRIDILDPAL 303 (404)
T ss_pred hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHH-HHHhccccccccceEEEEeccccccccHhh
Confidence 111222333223335566777777654310 11 1111111 123447787776544443
Q ss_pred -hcC--CceEEcCCCCHHHHHHHHHHhh
Q 002939 152 -SIG--SKTFQIDVLNEEEAWTLFKKMT 176 (864)
Q Consensus 152 -~~~--~~~~~l~~L~~~e~~~l~~~~~ 176 (864)
..+ ++.++.++-+.+.-.++++-+.
T Consensus 304 lrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 304 LRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 222 6778888888777778776654
No 252
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.73 E-value=0.013 Score=69.85 Aligned_cols=38 Identities=34% Similarity=0.343 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE 56 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 56 (864)
.++.++|+.|+|||++|+.+++..... -...+.++++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se 636 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSE 636 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHH
Confidence 478899999999999999999765422 23356666654
No 253
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.73 E-value=0.038 Score=60.99 Aligned_cols=185 Identities=17% Similarity=0.143 Sum_probs=105.5
Q ss_pred hHHHHHHHhc----C-CCccEEEEEcCCCCcHHHHHHHHHHHhhh---c---cCCCeEEEEEccCCCChHHHHHHHHHHh
Q 002939 3 TLKNVQNALL----D-PDISIIGMYGMGGVGKTTLVKEVARRAKK---D---MLFDEVVFAEVSETPDIGKIQGELADQL 71 (864)
Q Consensus 3 ~~~~i~~~l~----~-~~~~vi~i~G~~G~GKTtLa~~~~~~~~~---~---~~f~~~~~v~~~~~~~~~~~~~~i~~~l 71 (864)
+..+|-+++. + ...+.+.|.|.+|.|||..+..|+..... + ..|++ +.|+.-.-..+.+++..|..++
T Consensus 404 E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~~Y~~I~~~l 482 (767)
T KOG1514|consen 404 EFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPREIYEKIWEAL 482 (767)
T ss_pred HHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHHHHHHHHHhc
Confidence 4455555554 3 33469999999999999999999996541 1 13433 3556666677999999999998
Q ss_pred CCccccchhhhhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCchhc--cccccCCCCC-CCCCcEEEEEe
Q 002939 72 GMKFSQGEIADQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWEDLD--LEKVGVPSGN-DWRGCKVLLTA 144 (864)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~~--~~~l~~~~~~-~~~gs~IivTt 144 (864)
.... ......++.+..+.. +.+..+|++|+++..-. -+.+...|.+ ..++||++|-+
T Consensus 483 sg~~----------------~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 483 SGER----------------VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred ccCc----------------ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 6532 223333444444443 24668999999864411 0111111111 12356655543
Q ss_pred C-Ch----------HHHhhcCCceEEcCCCCHHHHHHHHHHhhCCC--CCCCcchHHHHHHHHhcCCcchHHH
Q 002939 145 R-DR----------HVLGSIGSKTFQIDVLNEEEAWTLFKKMTGDC--AEKGELNFVAIDITKECGGLPIAIV 204 (864)
Q Consensus 145 R-~~----------~v~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~--~~~~~~~~~~~~i~~~~~g~Pla~~ 204 (864)
= +. .+....+-..+...+-+.++-.++...+..+. ......+-++++++...|..-.|+.
T Consensus 547 IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRrald 619 (767)
T KOG1514|consen 547 IANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALD 619 (767)
T ss_pred ecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHH
Confidence 2 11 12223335667888889888888888877322 2233333444444444444444433
No 254
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.72 E-value=0.0093 Score=65.97 Aligned_cols=48 Identities=27% Similarity=0.351 Sum_probs=37.9
Q ss_pred HHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEcc
Q 002939 4 LKNVQNALLD-----PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVS 55 (864)
Q Consensus 4 ~~~i~~~l~~-----~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~ 55 (864)
++++..||.+ ...+++.++||+|+||||.++.++++.. |+.+-|.+-.
T Consensus 28 v~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~np~ 80 (519)
T PF03215_consen 28 VEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWINPV 80 (519)
T ss_pred HHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecCCC
Confidence 5677888864 2357999999999999999999998864 6677786543
No 255
>PRK04296 thymidine kinase; Provisional
Probab=96.70 E-value=0.0023 Score=61.41 Aligned_cols=112 Identities=15% Similarity=0.050 Sum_probs=60.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPG 96 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (864)
.++.++|+.|.||||+|..++.+...+ ...++++. ..++.+.....++..++...... ......+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~-----------~~~~~~~ 67 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAI-----------PVSSDTD 67 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccce-----------EeCChHH
Confidence 478899999999999999999987654 23344442 11111111223445554322210 0112233
Q ss_pred HHHHHHHHHhcCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEeCCh
Q 002939 97 RARKLYARLQKENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTARDR 147 (864)
Q Consensus 97 ~~~~~~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~ 147 (864)
....+.+ ..++.-+||+|.+.-. ++...+...+. ..|..||+|.++.
T Consensus 68 ~~~~~~~--~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 68 IFELIEE--EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred HHHHHHh--hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 3333333 2245569999998543 22333322211 2467899999874
No 256
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.0096 Score=62.60 Aligned_cols=60 Identities=20% Similarity=0.190 Sum_probs=40.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC-CChHHHHHHHHHHhCCcc
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET-PDIGKIQGELADQLGMKF 75 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~~ 75 (864)
.+++.++|+.|+||||++.+++.....+.....+.+++.... ....+.++..++.++.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~ 197 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPV 197 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCce
Confidence 479999999999999999999988654311235666665432 234455566666666543
No 257
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.68 E-value=0.013 Score=58.50 Aligned_cols=54 Identities=13% Similarity=0.263 Sum_probs=38.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGM 73 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 73 (864)
..+++.|.|++|+|||++|.++......+ -..++|++..+ ++.++.+.+ ++++.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~~-~~~g~ 73 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRNM-AQFGW 73 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHHH-HHhCC
Confidence 45799999999999999999887765433 45688988754 455655553 34443
No 258
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.66 E-value=0.011 Score=55.33 Aligned_cols=39 Identities=31% Similarity=0.454 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP 58 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~ 58 (864)
++.|+|++|+||||++..++...... -..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcch
Confidence 47899999999999999999887542 3557888876554
No 259
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.65 E-value=0.0093 Score=61.73 Aligned_cols=99 Identities=21% Similarity=0.292 Sum_probs=58.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhc----cCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKD----MLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQE 91 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 91 (864)
.+++-|+|++|+|||+++.+++-..... ..-..++||+..+.|+++++. ++++.++.+.. +..+ .......
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~--~~l~--~i~~~~~ 170 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPD--AVLD--NILYARA 170 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChH--HhcC--cEEEecC
Confidence 4689999999999999998877543211 112468999999988888874 46677654322 1111 1111112
Q ss_pred CChhhH---HHHHHHHHhcCCeEEEEEcCCC
Q 002939 92 SDVPGR---ARKLYARLQKENKILVILDNIW 119 (864)
Q Consensus 92 ~~~~~~---~~~~~~~l~~~~~~LlvlDdv~ 119 (864)
.+..+. +..+...+.+.+--|||+|.+.
T Consensus 171 ~~~e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 171 YTSEHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred CCHHHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 222222 2333334444445588999874
No 260
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.62 E-value=0.034 Score=60.71 Aligned_cols=181 Identities=15% Similarity=0.105 Sum_probs=101.9
Q ss_pred HHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCc--cccchh
Q 002939 4 LKNVQNALLDPDI-SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMK--FSQGEI 80 (864)
Q Consensus 4 ~~~i~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~--~~~~~~ 80 (864)
++.|.+.+..++. .--.+.|+-|+||||+|+-++.-.-..+.-+. ++... ....+.+... ...-++
T Consensus 25 ~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~-------ePC~~----C~~Ck~I~~g~~~DviEi 93 (515)
T COG2812 25 VKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTA-------EPCGK----CISCKEINEGSLIDVIEI 93 (515)
T ss_pred HHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCC-------Ccchh----hhhhHhhhcCCcccchhh
Confidence 4455566666554 45567999999999999999987654321000 01110 1111222111 111111
Q ss_pred hhhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEeCChH-HHh-h
Q 002939 81 ADQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTARDRH-VLG-S 152 (864)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~~-v~~-~ 152 (864)
... ....-+..+.|.+... +++-=+.|+|+|.-. ..|+++...+-......+.|+.|++.. +.. .
T Consensus 94 DaA-------Sn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 94 DAA-------SNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred hhh-------hccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhh
Confidence 100 1112233445555554 234458999998633 457777665555445667777777653 322 2
Q ss_pred cC-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHH
Q 002939 153 IG-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAI 203 (864)
Q Consensus 153 ~~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~ 203 (864)
.+ .+.|.++.++.++....+...+.... -...++...-|++...|.....
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~-I~~e~~aL~~ia~~a~Gs~RDa 217 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEG-INIEEDALSLIARAAEGSLRDA 217 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcC-CccCHHHHHHHHHHcCCChhhH
Confidence 22 68999999999999999988873211 1222445557788888866633
No 261
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.60 E-value=0.019 Score=59.98 Aligned_cols=99 Identities=19% Similarity=0.252 Sum_probs=58.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh----ccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKK----DMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQE 91 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~----~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 91 (864)
.++.-|+|++|+|||+++.+++-.... ...-..++||+....|+++++. ++++.++.+.. +..+ .+.+...
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~d~~--~~l~--~I~~~~~ 200 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGMDAD--AVLD--NIIYARA 200 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCCChh--hhcC--eEEEecC
Confidence 468889999999999999988644321 1112468999999999988874 46666665422 1111 1122222
Q ss_pred CChhhH---HHHHHHHHhcCCeEEEEEcCCC
Q 002939 92 SDVPGR---ARKLYARLQKENKILVILDNIW 119 (864)
Q Consensus 92 ~~~~~~---~~~~~~~l~~~~~~LlvlDdv~ 119 (864)
.+..+. +..+...+.+.+--|||+|.+.
T Consensus 201 ~~~e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 201 YTYEHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 233322 2233333433444578888774
No 262
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.59 E-value=0.02 Score=67.68 Aligned_cols=150 Identities=16% Similarity=0.178 Sum_probs=80.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
.+.|.++|++|+|||++|+.+++..... .+.++.... .... .....
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~~~-----~i~i~~~~i----------~~~~-------------------~g~~~ 257 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAGAY-----FISINGPEI----------MSKY-------------------YGESE 257 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhCCe-----EEEEecHHH----------hccc-------------------ccHHH
Confidence 4678999999999999999999876432 233332211 0000 00112
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCchhc-------------cccccCCCCC-CCCCcEEEE-EeCChHHHh----hc-C-
Q 002939 96 GRARKLYARLQKENKILVILDNIWEDLD-------------LEKVGVPSGN-DWRGCKVLL-TARDRHVLG----SI-G- 154 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~~-~~~gs~Iiv-TtR~~~v~~----~~-~- 154 (864)
.....+.+........+|++|+++.... ...+...+.. ...+..+++ ||....-.. .. +
T Consensus 258 ~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRf 337 (733)
T TIGR01243 258 ERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRF 337 (733)
T ss_pred HHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhc
Confidence 2334444444445668999999864310 1112111111 112334444 444332111 11 1
Q ss_pred CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcch
Q 002939 155 SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPI 201 (864)
Q Consensus 155 ~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 201 (864)
...+.+...+.++..+++........... +.....+++.+.|+--
T Consensus 338 d~~i~i~~P~~~~R~~Il~~~~~~~~l~~--d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 338 DREIVIRVPDKRARKEILKVHTRNMPLAE--DVDLDKLAEVTHGFVG 382 (733)
T ss_pred cEEEEeCCcCHHHHHHHHHHHhcCCCCcc--ccCHHHHHHhCCCCCH
Confidence 45678888888988888887653322111 1124567888887653
No 263
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.54 E-value=0.0056 Score=54.68 Aligned_cols=105 Identities=20% Similarity=0.354 Sum_probs=51.0
Q ss_pred CCchhhcCCCCceEEEEeccccccC-CcccccCCCccEEEecCcccccc--ccccccCcccEEeCCCCCCccCch-hhcc
Q 002939 355 IPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDGCKLEDI--RIIGELKELEILSLQGCDIEHLPR-EIGQ 430 (864)
Q Consensus 355 ~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~i~~lp~-~~~~ 430 (864)
++..+|.++++|+.+.+.. .+..+ ...|.++.+|+.+.+..+ +..+ ..+..++.|+++.+.. .+..++. .+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4455566677777777664 45555 334666666777776653 5554 3466666677777754 4444432 3445
Q ss_pred ccccceecccccccccccChhhhhcCcccceeecc
Q 002939 431 LTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMA 465 (864)
Q Consensus 431 l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 465 (864)
+++|+.+++..+ +..++...+.+. +|+.+.+.
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 677777776543 455555556665 66666654
No 264
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.53 E-value=0.011 Score=68.69 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=27.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE 56 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 56 (864)
...+.++|++|+|||++|+.++..... ..+.+++++
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~id~se 523 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSE 523 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCC-----CcEEeechh
Confidence 357899999999999999999887732 244556554
No 265
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.52 E-value=0.054 Score=56.25 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=33.7
Q ss_pred eEEcCCCCHHHHHHHHHHhhC-CCCCC-CcchHHHHHHHHhcCCcchHH
Q 002939 157 TFQIDVLNEEEAWTLFKKMTG-DCAEK-GELNFVAIDITKECGGLPIAI 203 (864)
Q Consensus 157 ~~~l~~L~~~e~~~l~~~~~~-~~~~~-~~~~~~~~~i~~~~~g~Pla~ 203 (864)
.+++++++.+|+..++..+.. ..... ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988772 21222 334556667777779998654
No 266
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.49 E-value=0.0018 Score=62.51 Aligned_cols=83 Identities=31% Similarity=0.396 Sum_probs=50.9
Q ss_pred cCCCCceEEEEecc--ccc-cCCcccccCCCccEEEecCcccccc---ccccccCcccEEeCCCCCCccCc----hhhcc
Q 002939 361 MGMPKLKVLLFIRM--RLL-SLPSSIRLLTDLRTLCLDGCKLEDI---RIIGELKELEILSLQGCDIEHLP----REIGQ 430 (864)
Q Consensus 361 ~~l~~Lr~L~L~~~--~i~-~lp~~~~~l~~L~~L~L~~~~l~~l---~~~~~l~~L~~L~l~~~~i~~lp----~~~~~ 430 (864)
..+++|+.|+++.| ++. .++-....+++|++|++++|++..+ +....+.+|..|++..|..+.+- ..+..
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 45667777777777 333 3343445557777777777766544 45666677777777777655441 23455
Q ss_pred ccccceecccccc
Q 002939 431 LTQLKLLDLSYCF 443 (864)
Q Consensus 431 l~~L~~L~l~~~~ 443 (864)
+++|.+||-....
T Consensus 142 l~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 142 LPSLKYLDGCDVD 154 (260)
T ss_pred hhhhccccccccC
Confidence 6777777665543
No 267
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.47 E-value=0.02 Score=58.76 Aligned_cols=93 Identities=20% Similarity=0.219 Sum_probs=55.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
.+++-|+|+.|+||||||..++...... -..++||++....++. .++.+|.+... ......+..+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~-----~a~~lGvdl~r--------llv~~P~~~E 117 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPE-----YAESLGVDLDR--------LLVVQPDTGE 117 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HH-----HHHHTT--GGG--------EEEEE-SSHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhh-----HHHhcCccccc--------eEEecCCcHH
Confidence 4799999999999999999988876544 4568999998877653 45666655431 1111123344
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCchhc
Q 002939 96 GRARKLYARLQKENKILVILDNIWEDLD 123 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~~~~ 123 (864)
+....+.+-++.+..-++|+|-|.....
T Consensus 118 ~al~~~e~lirsg~~~lVVvDSv~al~p 145 (322)
T PF00154_consen 118 QALWIAEQLIRSGAVDLVVVDSVAALVP 145 (322)
T ss_dssp HHHHHHHHHHHTTSESEEEEE-CTT-B-
T ss_pred HHHHHHHHHhhcccccEEEEecCcccCC
Confidence 4444444444455666999999865533
No 268
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.024 Score=62.74 Aligned_cols=164 Identities=19% Similarity=0.253 Sum_probs=89.2
Q ss_pred chHHHHHHHhcCCC---------ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhC
Q 002939 2 STLKNVQNALLDPD---------ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLG 72 (864)
Q Consensus 2 ~~~~~i~~~l~~~~---------~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 72 (864)
++..+++++|.+.. ++-|.++|++|.|||.||++++.+..+- | +..|... .++..
T Consensus 160 eel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~--------FVemf- 223 (596)
T COG0465 160 EELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSD--------FVEMF- 223 (596)
T ss_pred HHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchh--------hhhhh-
Confidence 35677888888632 4689999999999999999999998875 2 1222111 01110
Q ss_pred CccccchhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchhc----------------cccccCCCCCCC-
Q 002939 73 MKFSQGEIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDLD----------------LEKVGVPSGNDW- 135 (864)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~~~~- 135 (864)
........+.+..+-+++.++.+++|.++.... +..+...-..+.
T Consensus 224 ------------------VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~ 285 (596)
T COG0465 224 ------------------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG 285 (596)
T ss_pred ------------------cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence 011122344455555456678999998764311 122222212121
Q ss_pred CCcEEEEEeCCh-HHHh----hcC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcch
Q 002939 136 RGCKVLLTARDR-HVLG----SIG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPI 201 (864)
Q Consensus 136 ~gs~IivTtR~~-~v~~----~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 201 (864)
+...|+++..++ .|.. +.+ .+.+.++.-+-..-.++++.++....-.++.+ .. .|++.+-|.--
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vd-l~-~iAr~tpGfsG 356 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVD-LK-KIARGTPGFSG 356 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCC-HH-HHhhhCCCccc
Confidence 223455544333 3332 223 66777777776777777776663322222222 11 37777777543
No 269
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.44 E-value=0.022 Score=59.76 Aligned_cols=57 Identities=28% Similarity=0.419 Sum_probs=42.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcc----CCCeEEEEEccCCCChHHHHHHHHHHhCC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDM----LFDEVVFAEVSETPDIGKIQGELADQLGM 73 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 73 (864)
..++-|+|++|+|||+++.+++....... .-..++||+..+.+++.++. ++++.++.
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~ 162 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGL 162 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCC
Confidence 57999999999999999999987643211 11479999999888887764 44555543
No 270
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.44 E-value=0.017 Score=59.24 Aligned_cols=42 Identities=26% Similarity=0.304 Sum_probs=31.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE 56 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 56 (864)
+.++|.|+|++|+||||++.+++.....+..-..+..|+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 346999999999999999999998876431113466777654
No 271
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.43 E-value=0.06 Score=54.08 Aligned_cols=163 Identities=16% Similarity=0.188 Sum_probs=93.8
Q ss_pred chHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCC-CeEEEEEccCCCCh-HHHHHHHHHHhCCcc
Q 002939 2 STLKNVQNALLD----PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLF-DEVVFAEVSETPDI-GKIQGELADQLGMKF 75 (864)
Q Consensus 2 ~~~~~i~~~l~~----~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~~v~~~~~~~~-~~~~~~i~~~l~~~~ 75 (864)
.+-.++-.|+.. ....-|.++||.|.|||+|...+..+.+. + +...-|........ +-.++.|.+++....
T Consensus 31 ~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~---~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~ 107 (408)
T KOG2228|consen 31 DEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQE---NGENFLLVRLNGELQTDKIALKGITRQLALEL 107 (408)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHh---cCCeEEEEEECccchhhHHHHHHHHHHHHHHH
Confidence 344556666642 33457889999999999999988888322 3 33444445443322 234566666653222
Q ss_pred ccchhhhhccccccCCCChhhHHHHHHHHHhc-----CCeEEEEEcCCCchhc-------cccccCCCCCCCCCcEEEEE
Q 002939 76 SQGEIADQRGMKFSQESDVPGRARKLYARLQK-----ENKILVILDNIWEDLD-------LEKVGVPSGNDWRGCKVLLT 143 (864)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~LlvlDdv~~~~~-------~~~l~~~~~~~~~gs~IivT 143 (864)
... .....+..+....+...|.. +.++.+|+|.+|-... ++-+-..-....+=+-|-+|
T Consensus 108 ~~~---------~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 108 NRI---------VKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred hhh---------heeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 100 01123344556666666653 2458999998864422 11111111122334577789
Q ss_pred eCChH-------HHhhcC-CceEEcCCCCHHHHHHHHHHhh
Q 002939 144 ARDRH-------VLGSIG-SKTFQIDVLNEEEAWTLFKKMT 176 (864)
Q Consensus 144 tR~~~-------v~~~~~-~~~~~l~~L~~~e~~~l~~~~~ 176 (864)
||-.. |-.++. ..++-++.+.-++..++++...
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 99642 223344 4567778888899999998877
No 272
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.43 E-value=0.0013 Score=63.11 Aligned_cols=172 Identities=19% Similarity=0.169 Sum_probs=81.1
Q ss_pred CCCceEEEEeccccc-----cCCcccccCCCccEEEecCcccc---c--------c-ccccccCcccEEeCCCCCCc-cC
Q 002939 363 MPKLKVLLFIRMRLL-----SLPSSIRLLTDLRTLCLDGCKLE---D--------I-RIIGELKELEILSLQGCDIE-HL 424 (864)
Q Consensus 363 l~~Lr~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~l~---~--------l-~~~~~l~~L~~L~l~~~~i~-~l 424 (864)
+..+..++||||.|. .+...+.+-++|+..+++.-... + + +.+-++++|+..+|+.|.+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 555666666666554 23334455556666665543111 0 0 34455666666666666543 33
Q ss_pred ch----hhccccccceecccccccccccChhh-------------hhcCcccceeecccccccc--------ccccCCcc
Q 002939 425 PR----EIGQLTQLKLLDLSYCFELKVIAPNV-------------LSNLSQLEELYMATCCIKW--------EISNCSLL 479 (864)
Q Consensus 425 p~----~~~~l~~L~~L~l~~~~~l~~~~~~~-------------l~~l~~L~~L~l~~~~~~~--------~~~~~~~L 479 (864)
|. -+.+-+.|.||.+++|+ +.-+...- .++-+.|+...+..|.+.. .+..-..|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 32 24455666666666664 33322111 2234556666665555432 12222344
Q ss_pred hhhhcCCCCccCCC--------CccCcccceeccccccc--ccccccccccccCCCcceEEEeeCC
Q 002939 480 EEIVGKEGGVEADP--------SFVFPRLTILQLCYLPE--LRAFYPGIHTLECPMLTKLKVSCCD 535 (864)
Q Consensus 480 ~~L~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~--l~~~~~~~~~~~~~~L~~L~l~~c~ 535 (864)
+.+.+..|++.... .+...+|+.|++.+..- ..+.........++.|+.|.+..|-
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 44444445444321 11234555555554221 1111112223345667777777663
No 273
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.43 E-value=0.016 Score=60.23 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=40.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh---cc-CCCeEEEEEccCCCChHHHHHHHHHHhCC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKK---DM-LFDEVVFAEVSETPDIGKIQGELADQLGM 73 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~---~~-~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 73 (864)
..++.|+|++|+||||++..++..... .. .-..++|++..+.+....+ ..+++.++.
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 579999999999999999998764221 11 1236799999888777764 445555543
No 274
>PTZ00035 Rad51 protein; Provisional
Probab=96.42 E-value=0.022 Score=59.76 Aligned_cols=99 Identities=18% Similarity=0.272 Sum_probs=57.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh----ccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKK----DMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQE 91 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~----~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 91 (864)
..++.|+|++|+||||++..++-.... ...-..++|++....++.+++ ..+++.++.... ...+ ...+...
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~--~~l~--nI~~~~~ 192 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPE--DVLD--NIAYARA 192 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChH--hHhh--ceEEEcc
Confidence 479999999999999999988765431 111245789998887877764 445666544321 1111 1111122
Q ss_pred CChhhHHH---HHHHHHhcCCeEEEEEcCCC
Q 002939 92 SDVPGRAR---KLYARLQKENKILVILDNIW 119 (864)
Q Consensus 92 ~~~~~~~~---~~~~~l~~~~~~LlvlDdv~ 119 (864)
.+..+..+ .+.+.+...+--|||+|.+.
T Consensus 193 ~~~e~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 193 YNHEHQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred CCHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 22222222 23333333455688888774
No 275
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.39 E-value=0.0046 Score=54.82 Aligned_cols=30 Identities=37% Similarity=0.489 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCe
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKKDMLFDE 48 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~ 48 (864)
.|.|+|++|+||||+++++.+..+.++ |..
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g-~kv 36 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKG-YKV 36 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcC-cee
Confidence 689999999999999999999988764 433
No 276
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.022 Score=64.19 Aligned_cols=130 Identities=21% Similarity=0.222 Sum_probs=74.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
..+.+.++|++|.|||.||+++++..... |-.+.. + + +.... ....
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~--fi~v~~---~------~----l~sk~-------------------vGes 320 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSR--FISVKG---S------E----LLSKW-------------------VGES 320 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCe--EEEeeC---H------H----Hhccc-------------------cchH
Confidence 34689999999999999999999965543 322211 1 0 00000 0112
Q ss_pred hhHHHHHHHHHhcCCeEEEEEcCCCchhccc-------------cccCCCC--CCCCCcEEEEEeCChHHHh----hc-C
Q 002939 95 PGRARKLYARLQKENKILVILDNIWEDLDLE-------------KVGVPSG--NDWRGCKVLLTARDRHVLG----SI-G 154 (864)
Q Consensus 95 ~~~~~~~~~~l~~~~~~LlvlDdv~~~~~~~-------------~l~~~~~--~~~~gs~IivTtR~~~v~~----~~-~ 154 (864)
...+..+++.-.+.....|++|+++....+. .+..... ....+..||-||-.+.... .. +
T Consensus 321 ek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gR 400 (494)
T COG0464 321 EKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGR 400 (494)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCc
Confidence 2233444444445788999999986553222 1111221 1112323444444333322 11 2
Q ss_pred -CceEEcCCCCHHHHHHHHHHhhCC
Q 002939 155 -SKTFQIDVLNEEEAWTLFKKMTGD 178 (864)
Q Consensus 155 -~~~~~l~~L~~~e~~~l~~~~~~~ 178 (864)
...+.++.-+.++..+.|+.+..+
T Consensus 401 fd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 401 FDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred cceEeecCCCCHHHHHHHHHHHhcc
Confidence 578899999999999999999853
No 277
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.39 E-value=0.02 Score=54.24 Aligned_cols=37 Identities=32% Similarity=0.428 Sum_probs=28.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE 56 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 56 (864)
++.+.|++|+||||+++.++...... -..++.+++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~--g~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK--GKKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEEcCC
Confidence 68899999999999999999887654 22456666553
No 278
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.37 E-value=0.02 Score=52.65 Aligned_cols=25 Identities=40% Similarity=0.497 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
..+++|.||+|+|||||++++..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999999987
No 279
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.36 E-value=0.023 Score=61.45 Aligned_cols=58 Identities=28% Similarity=0.320 Sum_probs=39.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC-CChHHHHHHHHHHhCCc
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET-PDIGKIQGELADQLGMK 74 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~ 74 (864)
+..+|.++|.+|+||||.|..++.....++ ..+..+++... ....+.++.++++++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g--~kV~lV~~D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG--LKVGLVAADTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEecCCCCCHHHHHHHHHHHHHcCCc
Confidence 357999999999999999999998876542 24555655432 12345556666666543
No 280
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.34 E-value=0.014 Score=58.15 Aligned_cols=99 Identities=19% Similarity=0.186 Sum_probs=59.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh--ccCCCeEEEEEccCCC-ChHHHHHHHHHHhCCccccchhhhhccccccC-
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKK--DMLFDEVVFAEVSETP-DIGKIQGELADQLGMKFSQGEIADQRGMKFSQ- 90 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~--~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~- 90 (864)
+-+.++|.|-+|+|||+|+.++.++... +..-+.++|+-+.+.. ...++..++...=..... -.....
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~t--------v~v~~t~ 139 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERV--------VLFLNLA 139 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceE--------EEEEecC
Confidence 3468999999999999999998887541 2234778999888764 455555555443111100 000000
Q ss_pred CCCh------hhHHHHHHHHHhc--CCeEEEEEcCCCch
Q 002939 91 ESDV------PGRARKLYARLQK--ENKILVILDNIWED 121 (864)
Q Consensus 91 ~~~~------~~~~~~~~~~l~~--~~~~LlvlDdv~~~ 121 (864)
.+.. ....-.+.++++. ++++|+++||+...
T Consensus 140 ~~~~~~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 140 NDPTIERIITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 1111 1122344555552 69999999998655
No 281
>PRK06547 hypothetical protein; Provisional
Probab=96.33 E-value=0.0056 Score=57.30 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 4 LKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 4 ~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
++.+...+......+|+|.|++|+||||+|+.+.+...
T Consensus 3 ~~~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 3 VALIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34556667777888999999999999999999998743
No 282
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.32 E-value=0.1 Score=50.95 Aligned_cols=187 Identities=13% Similarity=0.142 Sum_probs=100.8
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhhhc----cCCCeEEEEEccCCC---------------------ChHHHHHHH
Q 002939 13 DPDISIIGMYGMGGVGKTTLVKEVARRAKKD----MLFDEVVFAEVSETP---------------------DIGKIQGEL 67 (864)
Q Consensus 13 ~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~~v~~~~~~---------------------~~~~~~~~i 67 (864)
..+.+-..++|++|.||-|.+-.+.++...- -.-+...|.+-+... .-+.+.+++
T Consensus 31 ~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQel 110 (351)
T KOG2035|consen 31 TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQEL 110 (351)
T ss_pred cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHH
Confidence 3568999999999999999998888875431 123445565544431 112222222
Q ss_pred HHHhCCccccchhhhhccccccCCCChhhHHHHHHHHHhcCCeE-EEEEcCCCch--hccccccCCCCCCCCCcEEEEEe
Q 002939 68 ADQLGMKFSQGEIADQRGMKFSQESDVPGRARKLYARLQKENKI-LVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTA 144 (864)
Q Consensus 68 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTt 144 (864)
+++...... +. ....+.| ++|+..++.. +.-.++......-.+.+|+|+..
T Consensus 111 lKevAQt~q------------------------ie--~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~c 164 (351)
T KOG2035|consen 111 LKEVAQTQQ------------------------IE--TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVC 164 (351)
T ss_pred HHHHHhhcc------------------------hh--hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEe
Confidence 222211100 00 0012333 6677766543 11111211111112345777654
Q ss_pred CCh--HHHhhcC-CceEEcCCCCHHHHHHHHHHhhC-CCCCCCcchHHHHHHHHhcCCcchHHHHHHHHhccCC------
Q 002939 145 RDR--HVLGSIG-SKTFQIDVLNEEEAWTLFKKMTG-DCAEKGELNFVAIDITKECGGLPIAIVTLAKALRNKS------ 214 (864)
Q Consensus 145 R~~--~v~~~~~-~~~~~l~~L~~~e~~~l~~~~~~-~~~~~~~~~~~~~~i~~~~~g~Pla~~~~~~~l~~~~------ 214 (864)
-+. -+.+.-. .-.+++...+++|....+...+. +.-.-| ++.+.+|+++++|.---...+-...+-+.
T Consensus 165 ns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~ 242 (351)
T KOG2035|consen 165 NSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTAN 242 (351)
T ss_pred cCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhcccccccc
Confidence 432 2222222 56789999999999999988772 222223 77899999999987653333333332211
Q ss_pred ----ChhHHHHHHHHhc
Q 002939 215 ----CVSAWKDALRQLK 227 (864)
Q Consensus 215 ----~~~~w~~~l~~l~ 227 (864)
..-+|+.++.+..
T Consensus 243 ~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 243 SQVIPKPDWEIYIQEIA 259 (351)
T ss_pred CCCCCCccHHHHHHHHH
Confidence 2346877776643
No 283
>PRK04328 hypothetical protein; Provisional
Probab=96.31 E-value=0.02 Score=57.58 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=38.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGM 73 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 73 (864)
..+++.|.|++|+|||++|.++......+ -..++|++..+ ++.++ .+.+++++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee--~~~~i-~~~~~~~g~ 75 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEE--HPVQV-RRNMRQFGW 75 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeC--CHHHH-HHHHHHcCC
Confidence 45799999999999999999987775433 35688988765 34444 334455554
No 284
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.02 Score=62.26 Aligned_cols=41 Identities=24% Similarity=0.346 Sum_probs=30.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEcc
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVS 55 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~ 55 (864)
..++|+|+|++|+||||++.+++.....+.....+..++..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD 389 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD 389 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc
Confidence 34799999999999999999998876543223446666654
No 285
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.28 E-value=0.0085 Score=54.30 Aligned_cols=40 Identities=28% Similarity=0.350 Sum_probs=32.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHH
Q 002939 19 IGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKI 63 (864)
Q Consensus 19 i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 63 (864)
|.++|++|+|||++|+.+++.... .+..+.++...+..++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl 41 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDL 41 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEeccccccccc
Confidence 679999999999999999998832 3566788887777765
No 286
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.28 E-value=0.035 Score=55.47 Aligned_cols=100 Identities=14% Similarity=0.081 Sum_probs=58.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccc-------c
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGM-------K 87 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-------~ 87 (864)
..+++.|+|.+|+|||++|.++......+ -..++|++..+. +.++.+++ .+++.............. .
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 45799999999999999999997665433 356889988653 45555553 444433221100000000 0
Q ss_pred ccCCCChhhHHHHHHHHHhcCCeEEEEEcCCC
Q 002939 88 FSQESDVPGRARKLYARLQKENKILVILDNIW 119 (864)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~ 119 (864)
........+....+.+.+.+.+.-++|+|.+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 00112234555666666654455689999874
No 287
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.27 E-value=0.025 Score=55.99 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=37.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGM 73 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 73 (864)
...++.|.|++|+||||+|.+++.....++ ..++|++... +..++.+.+ ++++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e~--~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQL--TTTEFIKQM-MSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCCC--CHHHHHHHH-HHhCC
Confidence 346999999999999999977776654332 4567777333 456666665 45554
No 288
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.26 E-value=0.029 Score=58.65 Aligned_cols=57 Identities=19% Similarity=0.251 Sum_probs=42.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh---c-cCCCeEEEEEccCCCChHHHHHHHHHHhCC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKK---D-MLFDEVVFAEVSETPDIGKIQGELADQLGM 73 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~---~-~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 73 (864)
..++-|+|++|+|||+++..++-.... . ..-..++||+..+.|.++++ .++++.++.
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 478899999999999999888754321 1 11236999999999988876 456666654
No 289
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.25 E-value=0.034 Score=54.99 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=37.9
Q ss_pred HHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q 002939 5 KNVQNALLD--PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPD 59 (864)
Q Consensus 5 ~~i~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~ 59 (864)
+.|=+.|.. ...+++.|+|.+|+||||+|.+++.....+ -..++|++....+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 344444432 235799999999999999999998876543 34688988765543
No 290
>PRK14974 cell division protein FtsY; Provisional
Probab=96.24 E-value=0.045 Score=57.05 Aligned_cols=58 Identities=33% Similarity=0.377 Sum_probs=37.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC-CChHHHHHHHHHHhCCc
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET-PDIGKIQGELADQLGMK 74 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~ 74 (864)
+..+|.++|+.|+||||.+.+++.....+ .+ .++.++.... ....+.++..+..++..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~ 197 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAGDTFRAGAIEQLEEHAERLGVK 197 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecCCcCcHHHHHHHHHHHHHcCCc
Confidence 35799999999999999999999876543 22 3445554321 12333445566666654
No 291
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.24 E-value=0.09 Score=53.23 Aligned_cols=39 Identities=15% Similarity=0.086 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 4 LKNVQNALLDPDIS-IIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 4 ~~~i~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
-+++...+..++++ ...++|+.|+||+++|..++...-.
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC 45 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILK 45 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhC
Confidence 46777888877765 5568999999999999999887643
No 292
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.23 E-value=0.0085 Score=54.30 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=30.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEcc
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVS 55 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~ 55 (864)
..+|+|+|.+|.||||||+++.+..... -..+.+++..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LDgD 39 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLDGD 39 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEEHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEecCc
Confidence 3589999999999999999999998866 3457777743
No 293
>PRK13695 putative NTPase; Provisional
Probab=96.22 E-value=0.0078 Score=56.99 Aligned_cols=35 Identities=40% Similarity=0.477 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAE 53 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~ 53 (864)
.|+|+|.+|+||||+++.+++..... .+..+-|+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~-G~~~~g~~~ 36 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEE-GYKVGGFYT 36 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEc
Confidence 47899999999999999999886542 244444543
No 294
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.22 E-value=0.0064 Score=72.09 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=28.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE 56 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 56 (864)
..++.++|++|+|||.+|+.++...... .+..+-+++++
T Consensus 596 ~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse 634 (852)
T TIGR03345 596 LGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSE 634 (852)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHH
Confidence 3578999999999999999998876432 23344555443
No 295
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.22 E-value=0.024 Score=53.27 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVAR 38 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~ 38 (864)
.-.+++|+|+.|+|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 346999999999999999998864
No 296
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.22 E-value=0.21 Score=49.22 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=46.8
Q ss_pred EEEeCChHHHhhcC---CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHHHHHhc
Q 002939 141 LLTARDRHVLGSIG---SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTLAKALR 211 (864)
Q Consensus 141 ivTtR~~~v~~~~~---~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~~~~l~ 211 (864)
=-|||.-.+....+ .-+.+++--+.+|-.++..+.+.- -.-.-.++.+.+|+++..|-|--...+-+.++
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~-l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI-LGIEIDEEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH-hCCCCChHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 34888655444332 367788999999999999887721 12223356778999999999975554444443
No 297
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.21 E-value=0.01 Score=54.12 Aligned_cols=122 Identities=25% Similarity=0.214 Sum_probs=63.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEc-cC--CCChHHHHHHHHHHhCCccccchhhhhccccccCCCC
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEV-SE--TPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESD 93 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~-~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 93 (864)
.+|-|++..|.||||+|...+-+...++ +. +.++-. .. ...... +++.++ ....... ..+......+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g-~~-v~~vQFlKg~~~~gE~~----~l~~l~-~v~~~~~--g~~~~~~~~~~ 73 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHG-YR-VGVVQFLKGGWKYGELK----ALERLP-NIEIHRM--GRGFFWTTEND 73 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-Ce-EEEEEEeCCCCccCHHH----HHHhCC-CcEEEEC--CCCCccCCCCh
Confidence 5788888899999999999998877652 33 333322 22 223332 333332 1110000 00000000111
Q ss_pred h------hhHHHHHHHHHhcCCeEEEEEcCCCch-----hccccccCCCCCCCCCcEEEEEeCCh
Q 002939 94 V------PGRARKLYARLQKENKILVILDNIWED-----LDLEKVGVPSGNDWRGCKVLLTARDR 147 (864)
Q Consensus 94 ~------~~~~~~~~~~l~~~~~~LlvlDdv~~~-----~~~~~l~~~~~~~~~gs~IivTtR~~ 147 (864)
. ....+...+.+..++-=|||||++-.. .+.+.+...+.....+.-||+|.|+.
T Consensus 74 ~~~~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 74 EEDIAAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1 112233344444344459999998433 33444444444455567899999985
No 298
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.00056 Score=65.86 Aligned_cols=82 Identities=30% Similarity=0.404 Sum_probs=67.1
Q ss_pred cCCCccEEEecCccccccccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccCh-hhhhcCcccceee
Q 002939 385 LLTDLRTLCLDGCKLEDIRIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAP-NVLSNLSQLEELY 463 (864)
Q Consensus 385 ~l~~L~~L~L~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~ 463 (864)
.+.+.+.|+.-||++.++..+.+++.|+.|.|+-|+|+++. .+..+++|++|.|+.|. +..+.. ..+.++++|+.|.
T Consensus 17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHh
Confidence 35677889999999999998999999999999999999885 47789999999999986 555432 3467888888888
Q ss_pred ccccc
Q 002939 464 MATCC 468 (864)
Q Consensus 464 l~~~~ 468 (864)
|..|.
T Consensus 95 L~ENP 99 (388)
T KOG2123|consen 95 LDENP 99 (388)
T ss_pred hccCC
Confidence 87664
No 299
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.19 E-value=0.014 Score=63.03 Aligned_cols=98 Identities=23% Similarity=0.304 Sum_probs=60.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC-ChHHHHHHHHHHhCCccccchhhhhccccccC-CC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP-DIGKIQGELADQLGMKFSQGEIADQRGMKFSQ-ES 92 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~~ 92 (864)
+-+.++|.|.+|+|||||+.++++..... +-+.++++-+.+.. .+.++..++...-..... -..... ++
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rs--------vvv~atsd~ 212 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKT--------VMVYGQMNE 212 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCccee--------EEEecCCCC
Confidence 34789999999999999999999887754 56888888777653 355555555432111100 000000 11
Q ss_pred Ch------hhHHHHHHHHHh-c-CCeEEEEEcCCCch
Q 002939 93 DV------PGRARKLYARLQ-K-ENKILVILDNIWED 121 (864)
Q Consensus 93 ~~------~~~~~~~~~~l~-~-~~~~LlvlDdv~~~ 121 (864)
+. ....-.+.++++ + ++++|+++|++...
T Consensus 213 ~~~~R~~a~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 213 PPGARMRVVLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 11 112334555554 2 79999999999654
No 300
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.16 E-value=0.014 Score=55.48 Aligned_cols=135 Identities=18% Similarity=0.213 Sum_probs=67.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC--CCChHHHHHH------HHHHhCCccccchhhhhccc
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE--TPDIGKIQGE------LADQLGMKFSQGEIADQRGM 86 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~--~~~~~~~~~~------i~~~l~~~~~~~~~~~~~~~ 86 (864)
+-.+++|.|+.|.|||||++.++..... ..+.++++-.. ..+....... +++.++.... ...
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~----~~~--- 93 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHL----ADR--- 93 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhH----hcC---
Confidence 3469999999999999999999876432 34445544221 1122222111 2333333211 000
Q ss_pred cccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCch---hccccccCCCCCC-CC-CcEEEEEeCChHHHhhcCCceEEc
Q 002939 87 KFSQESDVPGRARKLYARLQKENKILVILDNIWED---LDLEKVGVPSGND-WR-GCKVLLTARDRHVLGSIGSKTFQI 160 (864)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~---~~~~~l~~~~~~~-~~-gs~IivTtR~~~v~~~~~~~~~~l 160 (864)
........+.....+.+.+. .+.-++++|+.... ...+.+...+... .. |..||++|.+.........+.+.+
T Consensus 94 ~~~~LS~G~~qrl~laral~-~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l 171 (180)
T cd03214 94 PFNELSGGERQRVLLARALA-QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILL 171 (180)
T ss_pred CcccCCHHHHHHHHHHHHHh-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 00001111222334555565 57789999986432 1122222222111 11 567888888876654333344433
No 301
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.15 E-value=0.024 Score=54.49 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=35.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCC
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGM 73 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 73 (864)
++.|.|++|+|||++|.+++...... -..++|++..+ +..++.+. +++++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~-~~~~g~ 51 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIEN-AESLGW 51 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHH-HHHcCC
Confidence 36899999999999999998876543 24578887654 45555444 334443
No 302
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.15 E-value=0.015 Score=51.89 Aligned_cols=116 Identities=20% Similarity=0.316 Sum_probs=60.5
Q ss_pred cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCC-cccccCCCccEEEecCcccccc--ccccccCccc
Q 002939 336 ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLP-SSIRLLTDLRTLCLDGCKLEDI--RIIGELKELE 412 (864)
Q Consensus 336 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~l--~~~~~l~~L~ 412 (864)
.+.+|+.+.+.. ....+....|.+++.|+.+.+.++ +..++ ..|.++..|+.+.+.. .+..+ ..+..+++|+
T Consensus 10 ~~~~l~~i~~~~---~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 10 NCSNLESITFPN---TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T-TT--EEEETS---T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred CCCCCCEEEECC---CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 556777777653 233577777888888888888775 66653 4577887888888865 44444 4577788888
Q ss_pred EEeCCCCCCccCch-hhccccccceecccccccccccChhhhhcCcccc
Q 002939 413 ILSLQGCDIEHLPR-EIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLE 460 (864)
Q Consensus 413 ~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 460 (864)
.+++..+ +..++. .+... +|+.+.+.. .+..++...|.++++|+
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKLK 129 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG------
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccCC
Confidence 8888764 665543 45555 888887765 36666677677776664
No 303
>PRK06696 uridine kinase; Validated
Probab=96.13 E-value=0.019 Score=56.85 Aligned_cols=41 Identities=27% Similarity=0.366 Sum_probs=32.7
Q ss_pred hHHHHHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 3 TLKNVQNALL---DPDISIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 3 ~~~~i~~~l~---~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
.+++|.+.+. ..+..+|+|.|.+|+||||+|+++.......
T Consensus 6 ~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 6 LIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3566666664 3567899999999999999999999987543
No 304
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.13 E-value=0.026 Score=59.14 Aligned_cols=57 Identities=23% Similarity=0.348 Sum_probs=42.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcc----CCCeEEEEEccCCCChHHHHHHHHHHhCC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDM----LFDEVVFAEVSETPDIGKIQGELADQLGM 73 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 73 (864)
.+++-|+|++|+||||++.+++....... .-..++||+..+.++.+.+. ++++.++.
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 47899999999999999999987754210 11369999998888887764 44555543
No 305
>PRK05973 replicative DNA helicase; Provisional
Probab=96.13 E-value=0.04 Score=54.16 Aligned_cols=49 Identities=27% Similarity=0.170 Sum_probs=35.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHH
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGEL 67 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i 67 (864)
+..++.|.|.+|+|||++|.+++.....+ -..++|++..+. ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCC--HHHHHHHH
Confidence 34699999999999999999998876543 345777765543 55555554
No 306
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.12 E-value=0.0087 Score=61.99 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=33.6
Q ss_pred chHHHHHHHhcC------CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 2 STLKNVQNALLD------PDISIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 2 ~~~~~i~~~l~~------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
+.++++++++.. .+.++++++|++|+||||+|+.+++....
T Consensus 58 ~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 58 EAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 357778888853 34589999999999999999999998754
No 307
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.2 Score=52.84 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
|--.++||+|.|||+++.++++...
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN 260 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC
Confidence 6788999999999999999999865
No 308
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.10 E-value=0.013 Score=56.74 Aligned_cols=58 Identities=33% Similarity=0.510 Sum_probs=41.5
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC-CChHHHHHHHH
Q 002939 7 VQNALLD-PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET-PDIGKIQGELA 68 (864)
Q Consensus 7 i~~~l~~-~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~ 68 (864)
.++.+.- .+-..++|.|.+|+|||+|+.++.+.... +.++++.+.+. ..+.++.+++.
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~~----d~~V~~~iGer~~Ev~~~~~~~~ 64 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQDA----DVVVYALIGERGREVTEFIEELK 64 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCTT----TEEEEEEESECHHHHHHHHHHHH
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhcccc----cceeeeeccccchhHHHHHHHHh
Confidence 3455542 23468999999999999999999998853 45688888765 34555555553
No 309
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.09 E-value=0.011 Score=57.19 Aligned_cols=112 Identities=14% Similarity=0.152 Sum_probs=58.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPG 96 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (864)
.+|.|.|+.|.||||++..+....... ....++.--... +..... ...+ ..+ .+. ..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t~e~~~---E~~~~~-~~~~---i~q------~~v----g~~~~~ 62 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILTIEDPI---EFVHES-KRSL---INQ------REV----GLDTLS 62 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEEEcCCc---cccccC-ccce---eee------ccc----CCCccC
Confidence 479999999999999999988776532 233333221111 100000 0000 000 000 011223
Q ss_pred HHHHHHHHHhcCCeEEEEEcCCCchhccccccCCCCCCCCCcEEEEEeCChHHHh
Q 002939 97 RARKLYARLQKENKILVILDNIWEDLDLEKVGVPSGNDWRGCKVLLTARDRHVLG 151 (864)
Q Consensus 97 ~~~~~~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~~ 151 (864)
..+.+...++ ...=.+++|++.+.+.+....... ..|..++.|+-......
T Consensus 63 ~~~~i~~aLr-~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 63 FENALKAALR-QDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred HHHHHHHHhc-CCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 3455666665 345689999997666544432221 22556777776655443
No 310
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.09 E-value=0.025 Score=59.95 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=28.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE 56 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 56 (864)
.+++.++|++|+||||++.+++........ ..+..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G-~~V~Lit~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMG-KSVSLYTTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcC-CeEEEecccc
Confidence 468999999999999999999986533211 2344555443
No 311
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.09 E-value=0.0034 Score=63.29 Aligned_cols=42 Identities=26% Similarity=0.429 Sum_probs=32.5
Q ss_pred HHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHh-hhccCCCeE
Q 002939 8 QNALLDPDISIIGMYGMGGVGKTTLVKEVARRA-KKDMLFDEV 49 (864)
Q Consensus 8 ~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~-~~~~~f~~~ 49 (864)
++.|.++++..|.+.|.+|.|||.||-+..-.+ -++..|..+
T Consensus 237 LdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Ki 279 (436)
T COG1875 237 LDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKI 279 (436)
T ss_pred HHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceE
Confidence 678889999999999999999999997765543 233445553
No 312
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.044 Score=60.44 Aligned_cols=146 Identities=19% Similarity=0.265 Sum_probs=84.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPG 96 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (864)
.-|.++|++|+|||-||-+++.....+ +|.|..+. -+.+.+|. .++
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGPE-------lL~KyIGa--------------------SEq 747 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNLR-------FISVKGPE-------LLSKYIGA--------------------SEQ 747 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCHH-------HHHHHhcc--------------------cHH
Confidence 579999999999999999999876543 45665541 12223332 234
Q ss_pred HHHHHHHHHhcCCeEEEEEcCCCchh-------------ccccccCCCC--CCCCCcEEEE-EeCChHHHh---hcC--C
Q 002939 97 RARKLYARLQKENKILVILDNIWEDL-------------DLEKVGVPSG--NDWRGCKVLL-TARDRHVLG---SIG--S 155 (864)
Q Consensus 97 ~~~~~~~~l~~~~~~LlvlDdv~~~~-------------~~~~l~~~~~--~~~~gs~Iiv-TtR~~~v~~---~~~--~ 155 (864)
..+.++.+.+.-+.+.++||..+... -.+.+...+. .+-.|.-|+- |||..-+-. +.+ +
T Consensus 748 ~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD 827 (952)
T KOG0735|consen 748 NVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLD 827 (952)
T ss_pred HHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccc
Confidence 45666777766799999999886541 1222322222 1224544443 455332211 222 4
Q ss_pred ceEEcCCCCHHHHHHHHHHhhCC--CCCCCcchHHHHHHHHhcCCcc
Q 002939 156 KTFQIDVLNEEEAWTLFKKMTGD--CAEKGELNFVAIDITKECGGLP 200 (864)
Q Consensus 156 ~~~~l~~L~~~e~~~l~~~~~~~--~~~~~~~~~~~~~i~~~~~g~P 200 (864)
+.+.=+.-+..|-.+++...... ...+.++ +.++.+.+|+-
T Consensus 828 ~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl----~~~a~~T~g~t 870 (952)
T KOG0735|consen 828 KLVYCPLPDEPERLEILQVLSNSLLKDTDVDL----ECLAQKTDGFT 870 (952)
T ss_pred eeeeCCCCCcHHHHHHHHHHhhccCCccccch----HHHhhhcCCCc
Confidence 44444555677788888877632 2223333 35667777664
No 313
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.08 E-value=0.043 Score=55.75 Aligned_cols=56 Identities=30% Similarity=0.356 Sum_probs=37.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-hHHHHHHHHHHhC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPD-IGKIQGELADQLG 72 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i~~~l~ 72 (864)
+.++|.++|++|+||||.+.+++.....+ -..+.++++..-.. ..+-++..++..+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~~r~~a~~ql~~~~~~~~ 127 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDTFRAAAIEQLEEWAKRLG 127 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCCCCHHHHHHHHHHHHhCC
Confidence 45799999999999999999999877543 23566777654211 1233344455554
No 314
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.08 E-value=0.013 Score=57.07 Aligned_cols=56 Identities=21% Similarity=0.285 Sum_probs=38.6
Q ss_pred HHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q 002939 4 LKNVQNALLD--PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPD 59 (864)
Q Consensus 4 ~~~i~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~ 59 (864)
..++++.+.. .+..+|+|+|++|+|||||+.++......+++--.++=|+-|++++
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCC
Confidence 3455555543 3567999999999999999999999988765444466677676664
No 315
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.07 E-value=0.064 Score=46.22 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=28.3
Q ss_pred HHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 5 KNVQNALLD---PDISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 5 ~~i~~~l~~---~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
+.|.+++.+ ++.=|++++|++|+|||.+++.+++..-
T Consensus 39 ~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 39 NAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred HHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 444455544 3455999999999999999999999844
No 316
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.04 E-value=0.013 Score=51.19 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=26.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE 56 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 56 (864)
.+-|.|+|.+|+||||++.+++.... .-|++++.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~-------~~~i~isd 40 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG-------LEYIEISD 40 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC-------CceEehhh
Confidence 46789999999999999999995433 23666664
No 317
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=96.02 E-value=0.04 Score=56.64 Aligned_cols=49 Identities=18% Similarity=0.307 Sum_probs=37.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-hHHHHHHH
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPD-IGKIQGEL 67 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i 67 (864)
+-+.++|.|..|+|||+|++++++... -+.++|+-+.+..+ +.+++.++
T Consensus 156 kGqr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 156 KGGTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCCEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHH
Confidence 446899999999999999999988643 36788999887643 44555554
No 318
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.01 E-value=0.045 Score=57.23 Aligned_cols=40 Identities=28% Similarity=0.409 Sum_probs=30.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE 56 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 56 (864)
+.++|+++|++|+||||++..++.....++ ..+..+++..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~G--kkVglI~aDt 279 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDH 279 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcC--CcEEEEecCC
Confidence 457999999999999999999998765432 2455666543
No 319
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.01 E-value=0.031 Score=69.00 Aligned_cols=29 Identities=28% Similarity=0.212 Sum_probs=25.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
..+-|.++|++|+|||.||++++.+..+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~VP 1657 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVP 1657 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCCc
Confidence 35789999999999999999999997653
No 320
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.99 E-value=0.018 Score=53.07 Aligned_cols=123 Identities=22% Similarity=0.133 Sum_probs=65.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEE--EEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVV--FAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESD 93 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~--~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 93 (864)
...|-|++..|.||||.|..++-+....+ +...+ |+...........+.. ++....... .+......+.
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g-~~v~ivQFlKg~~~~GE~~~l~~----~~~~~~~~g----~g~~~~~~~~ 75 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHG-KKVGVIQFIKGAWPNGERAAFEP----HGVEFQVMG----TGFTWETQNR 75 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCC-CeEEEEEEecCCcccChHHHHHh----cCcEEEECC----CCCeecCCCc
Confidence 46888888899999999999998877653 33322 3332212233333322 222211100 1111111111
Q ss_pred ------hhhHHHHHHHHHhcCCeEEEEEcCCCch-----hccccccCCCCCCCCCcEEEEEeCCh
Q 002939 94 ------VPGRARKLYARLQKENKILVILDNIWED-----LDLEKVGVPSGNDWRGCKVLLTARDR 147 (864)
Q Consensus 94 ------~~~~~~~~~~~l~~~~~~LlvlDdv~~~-----~~~~~l~~~~~~~~~gs~IivTtR~~ 147 (864)
..+..+...+.+..++-=|||||.+-.. .+.+.+...+.....+.-||+|-|+.
T Consensus 76 ~~~~~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 76 EADTAIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1223334455555445559999998433 33334444444445567899999976
No 321
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.99 E-value=0.039 Score=55.65 Aligned_cols=135 Identities=16% Similarity=0.146 Sum_probs=71.8
Q ss_pred HHHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhh
Q 002939 4 LKNVQNALLD-PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIAD 82 (864)
Q Consensus 4 ~~~i~~~l~~-~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 82 (864)
.++++..+.+ .+..-++|.|+.|.||||+++.++...... .+.++++-..-... +-..+++..... ..+.....
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~-d~~~ei~~~~~~-~~q~~~~~ 172 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIV-DERSEIAGCVNG-VPQHDVGI 172 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecc-hhHHHHHHHhcc-cccccccc
Confidence 3455555543 445789999999999999999999876532 33344332211111 111233333211 11111000
Q ss_pred hccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchhccccccCCCCCCCCCcEEEEEeCChHHHh
Q 002939 83 QRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDLDLEKVGVPSGNDWRGCKVLLTARDRHVLG 151 (864)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~~ 151 (864)
...+ .+. -.....+...+.....=++|+|.+...+.+..+...+. .|..||+||-+..+..
T Consensus 173 r~~v----~~~-~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 173 RTDV----LDG-CPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred cccc----ccc-chHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 0000 001 11122333344435778999999977766666554433 3678999998765533
No 322
>PF13245 AAA_19: Part of AAA domain
Probab=95.96 E-value=0.021 Score=44.88 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=18.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
+-+++.|.|++|.|||+++.......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44688999999999995554444443
No 323
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.94 E-value=0.042 Score=58.37 Aligned_cols=87 Identities=30% Similarity=0.379 Sum_probs=52.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
..++.|.|.+|+||||++.+++...... -..++|++..+ +..++. .-++.++..... .......
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EE--s~~qi~-~Ra~rlg~~~~~--------l~l~~e~--- 145 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEE--SPEQIK-LRADRLGISTEN--------LYLLAET--- 145 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCc--CHHHHH-HHHHHcCCCccc--------EEEEccC---
Confidence 4699999999999999999999877643 34688887643 334332 223445432210 0000111
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCC
Q 002939 96 GRARKLYARLQKENKILVILDNIW 119 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~ 119 (864)
..+.+.+.+...+.-+||+|.+.
T Consensus 146 -~le~I~~~i~~~~~~lVVIDSIq 168 (372)
T cd01121 146 -NLEDILASIEELKPDLVIIDSIQ 168 (372)
T ss_pred -cHHHHHHHHHhcCCcEEEEcchH
Confidence 23445555544566789999875
No 324
>PRK10867 signal recognition particle protein; Provisional
Probab=95.94 E-value=0.071 Score=57.59 Aligned_cols=58 Identities=26% Similarity=0.327 Sum_probs=37.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC-ChHHHHHHHHHHhCCc
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP-DIGKIQGELADQLGMK 74 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~ 74 (864)
..+|.++|++|+||||.+.+++.....+. -..+..|++.... ...+.++..++..+.+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~-G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~ 158 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKK-KKKVLLVAADVYRPAAIEQLKTLGEQIGVP 158 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhc-CCcEEEEEccccchHHHHHHHHHHhhcCCe
Confidence 57999999999999999999988765441 1235556654322 1223344455555543
No 325
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.93 E-value=0.0065 Score=54.23 Aligned_cols=22 Identities=55% Similarity=0.862 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 002939 19 IGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 19 i~i~G~~G~GKTtLa~~~~~~~ 40 (864)
|+|.|++|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999985
No 326
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.92 E-value=0.035 Score=53.65 Aligned_cols=101 Identities=21% Similarity=0.197 Sum_probs=53.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCC--------CeEEEEEccCCCChHHHHHHHHHHhCCccccch--hhhhccc
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLF--------DEVVFAEVSETPDIGKIQGELADQLGMKFSQGE--IADQRGM 86 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f--------~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~ 86 (864)
.++.|+|++|+||||++.+++........| ..++|++.... ..++.+.+............ .....+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHHHHhcccCCccceEEeecccc
Confidence 589999999999999999999887642222 35788876655 44555555544432211010 1000000
Q ss_pred -----c--ccCCCChhhHHHHHHHHHhc-CCeEEEEEcCCC
Q 002939 87 -----K--FSQESDVPGRARKLYARLQK-ENKILVILDNIW 119 (864)
Q Consensus 87 -----~--~~~~~~~~~~~~~~~~~l~~-~~~~LlvlDdv~ 119 (864)
. ...........+.+.+.+.+ .+.-+||+|.+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~ 151 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQ 151 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GG
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHH
Confidence 0 00011134456677777765 455699999764
No 327
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.91 E-value=0.016 Score=57.70 Aligned_cols=101 Identities=17% Similarity=0.213 Sum_probs=56.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhcccc---cc-C
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMK---FS-Q 90 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~---~~-~ 90 (864)
..+++.|.|++|+|||+++.++......+. -+.++|++..+. .+++.+.+. .++.+.......+..... .. .
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~-ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF-GEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-T--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc-CCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 347999999999999999998776653320 135889887554 444444433 555432211111001000 00 0
Q ss_pred ---CCChhhHHHHHHHHHhcCCeEEEEEcCCC
Q 002939 91 ---ESDVPGRARKLYARLQKENKILVILDNIW 119 (864)
Q Consensus 91 ---~~~~~~~~~~~~~~l~~~~~~LlvlDdv~ 119 (864)
..+.......+.+.+...+.-.+|+|.+.
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 23455566666666654455789999864
No 328
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.90 E-value=0.013 Score=55.69 Aligned_cols=37 Identities=30% Similarity=0.547 Sum_probs=30.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAE 53 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~ 53 (864)
+..+|++.|+.|+||||+|+.++...... +..+++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEe
Confidence 45699999999999999999999987654 55566664
No 329
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.90 E-value=0.059 Score=56.19 Aligned_cols=58 Identities=26% Similarity=0.286 Sum_probs=39.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-hHHHHHHHHHHhCCc
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPD-IGKIQGELADQLGMK 74 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i~~~l~~~ 74 (864)
+.+++.++|+.|+||||++..++.....+ -..+.++++..-.. ..+.++..++.++.+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvp 263 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVE 263 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCC
Confidence 45799999999999999999999876543 23567777754322 344455555555543
No 330
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.89 E-value=0.028 Score=67.14 Aligned_cols=38 Identities=32% Similarity=0.311 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE 56 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 56 (864)
..+.++|+.|+|||++|+.+++..-.. -+..+.+++++
T Consensus 540 ~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~ 577 (821)
T CHL00095 540 ASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSE 577 (821)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchh
Confidence 467799999999999999999876432 13455666654
No 331
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.88 E-value=0.076 Score=57.33 Aligned_cols=58 Identities=26% Similarity=0.249 Sum_probs=37.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC-ChHHHHHHHHHHhCCc
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP-DIGKIQGELADQLGMK 74 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~ 74 (864)
..++.++|++|+||||.|..++.....+. -..+..|++.... ...+.+...+...+.+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~-g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp 157 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQ-GKKVLLVACDLYRPAAIEQLKVLGQQVGVP 157 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhC-CCeEEEEeccccchHHHHHHHHHHHhcCCc
Confidence 56999999999999999999998864321 1245566655322 1233344455555443
No 332
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.86 E-value=0.0065 Score=51.92 Aligned_cols=25 Identities=48% Similarity=0.723 Sum_probs=22.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 19 IGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 19 i~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
|.|+|++|+|||++|+.++.+....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999987643
No 333
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.85 E-value=0.031 Score=54.91 Aligned_cols=128 Identities=17% Similarity=0.174 Sum_probs=69.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC-----CCChHHHHHHHHHHhCCccccchhhhhcccccc
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE-----TPDIGKIQGELADQLGMKFSQGEIADQRGMKFS 89 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~-----~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 89 (864)
+..+++|+|.+|+||||+++.+..-.... .+.+++.... .....+-..++++.++..... -..+.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~-------~~ryP 107 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEF-------LYRYP 107 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHH-------hhcCC
Confidence 34699999999999999999999876532 3344444322 222334456666666633210 01111
Q ss_pred CCCChhhHH-HHHHHHHhcCCeEEEEEcCCCch------hccccccCCCCCCCCCcEEEEEeCChHHHhhcC
Q 002939 90 QESDVPGRA-RKLYARLQKENKILVILDNIWED------LDLEKVGVPSGNDWRGCKVLLTARDRHVLGSIG 154 (864)
Q Consensus 90 ~~~~~~~~~-~~~~~~l~~~~~~LlvlDdv~~~------~~~~~l~~~~~~~~~gs~IivTtR~~~v~~~~~ 154 (864)
..-+..+.. ..|.+.|. -+.-++|.|..-.. .+.-.+...+. ...|-..+..|-+-.++..+.
T Consensus 108 helSGGQrQRi~IARALa-l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 108 HELSGGQRQRIGIARALA-LNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred cccCchhhhhHHHHHHHh-hCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhc
Confidence 112222222 23445554 68889999975332 12211211111 122456777777777776554
No 334
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.83 E-value=0.048 Score=57.99 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=39.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcc--CCCeEEEEEccCCC-ChHHHHHHHHHHhCCcc
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDM--LFDEVVFAEVSETP-DIGKIQGELADQLGMKF 75 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~--~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~ 75 (864)
+.++|.++|+.|+||||.+.+++....... .-..+..+++..-. .....++..++.++.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv 236 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV 236 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce
Confidence 357999999999999999999998765321 22346666665422 12233555566565543
No 335
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.83 E-value=0.047 Score=55.60 Aligned_cols=51 Identities=18% Similarity=0.284 Sum_probs=40.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHH
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELA 68 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~ 68 (864)
+..+++.|+|.+|+|||+++.++......+ ...++||+..+. ..++.+...
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCC--HHHHHHHHH
Confidence 456899999999999999999999987765 677999988764 444444443
No 336
>PRK07667 uridine kinase; Provisional
Probab=95.83 E-value=0.017 Score=55.66 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=31.4
Q ss_pred HHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 4 LKNVQNALLD--PDISIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 4 ~~~i~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
.++|.+.+.. .+..+|+|.|.+|.||||+|+.+......
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4566777754 34479999999999999999999988754
No 337
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.82 E-value=0.019 Score=54.83 Aligned_cols=38 Identities=29% Similarity=0.355 Sum_probs=30.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEcc
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVS 55 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~ 55 (864)
.++|+|+|+.|+|||||++++..+...+ |..++..+-+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~--~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDK--FGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTT--EEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccc--cccceeeccc
Confidence 4799999999999999999999987654 6555555544
No 338
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.80 E-value=0.02 Score=56.63 Aligned_cols=55 Identities=24% Similarity=0.321 Sum_probs=42.3
Q ss_pred HHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCCh
Q 002939 6 NVQNALLD--PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDI 60 (864)
Q Consensus 6 ~i~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~ 60 (864)
+++..+.- .+..+|+|+|.+|+||||+...+......+.+--.++=|+-|++++-
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TG 95 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTG 95 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCC
Confidence 44444442 44569999999999999999999999887766556777787887753
No 339
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.79 E-value=0.061 Score=59.99 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=64.3
Q ss_pred HHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhh
Q 002939 5 KNVQNALLD--PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIAD 82 (864)
Q Consensus 5 ~~i~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 82 (864)
+++-+.|.. .+-+++.|.|++|+|||||+.+++.....+ -..++|+..-+ +..++.+. ++.++.+........
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~-~~~lg~~~~~~~~~g 324 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRN-AYSWGIDFEEMEQQG 324 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHH-HHHcCCChHHHhhCC
Confidence 344444443 245799999999999999999999887554 34677866544 45566555 356654332111010
Q ss_pred hcccc--ccCCCChhhHHHHHHHHHhcCCeEEEEEcCCC
Q 002939 83 QRGMK--FSQESDVPGRARKLYARLQKENKILVILDNIW 119 (864)
Q Consensus 83 ~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~ 119 (864)
..... ........+.++.+.+.+...+.-.+|+|.+.
T Consensus 325 ~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 325 LLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred cEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 01000 01122335566677777765455678888774
No 340
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.79 E-value=0.0085 Score=46.29 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
+|+|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 341
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.78 E-value=0.02 Score=56.41 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
+.=+++++|++|+||.-+++.+++....
T Consensus 109 KPLvLSfHG~tGTGKN~Va~iiA~n~~~ 136 (344)
T KOG2170|consen 109 KPLVLSFHGWTGTGKNYVAEIIAENLYR 136 (344)
T ss_pred CCeEEEecCCCCCchhHHHHHHHHHHHh
Confidence 3459999999999999999999998653
No 342
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.77 E-value=0.051 Score=50.89 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.-.+++|.|+.|.|||||++.++....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346999999999999999999988643
No 343
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.75 E-value=0.012 Score=56.07 Aligned_cols=47 Identities=28% Similarity=0.375 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE
Q 002939 5 KNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAE 53 (864)
Q Consensus 5 ~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~ 53 (864)
+..++.|. ...++.+.|++|.|||.||.+.+-+.-..+.|+.++++.
T Consensus 10 ~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 10 KFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp HHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred HHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 34456666 456999999999999999999998876667898888764
No 344
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.75 E-value=0.029 Score=60.43 Aligned_cols=98 Identities=23% Similarity=0.339 Sum_probs=58.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC-ChHHHHHHHHHHhCCccccchhhhhccccccC-CC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP-DIGKIQGELADQLGMKFSQGEIADQRGMKFSQ-ES 92 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~~ 92 (864)
+-+.++|.|.+|+|||||+.+++....... -+.++++-+.+.. .+.+++.++...=.... .-+.... ++
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~r--------svvV~atsd~ 213 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDK--------TALVFGQMNE 213 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcce--------eEEEEECCCC
Confidence 347899999999999999999988876432 2567787776654 35555555544211110 0000000 11
Q ss_pred Ch------hhHHHHHHHHHh--cCCeEEEEEcCCCch
Q 002939 93 DV------PGRARKLYARLQ--KENKILVILDNIWED 121 (864)
Q Consensus 93 ~~------~~~~~~~~~~l~--~~~~~LlvlDdv~~~ 121 (864)
+. ....-.+.++++ +++++||++|++...
T Consensus 214 p~~~r~~a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 214 PPGARLRVALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 11 112233455553 489999999998654
No 345
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.74 E-value=0.014 Score=57.00 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 389999999999999999999854
No 346
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.72 E-value=0.031 Score=60.12 Aligned_cols=98 Identities=20% Similarity=0.291 Sum_probs=59.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC-ChHHHHHHHHHHhCCccccchhhhhccccccC-CC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP-DIGKIQGELADQLGMKFSQGEIADQRGMKFSQ-ES 92 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~~ 92 (864)
+-+.++|.|.+|+|||+|+.++....... +-+.++|+-+.+.. ...++.+++...=.... .-..... .+
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~~-~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~r--------tvvv~~ts~~ 207 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVGQ-HQGVSIFCGIGERCREGEELYREMKEAGVLDN--------TVMVFGQMNE 207 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHhhccccce--------EEEEEeCCCC
Confidence 34689999999999999999998886532 34788888887654 34555555443211110 0000000 11
Q ss_pred Ch------hhHHHHHHHHHh--cCCeEEEEEcCCCch
Q 002939 93 DV------PGRARKLYARLQ--KENKILVILDNIWED 121 (864)
Q Consensus 93 ~~------~~~~~~~~~~l~--~~~~~LlvlDdv~~~ 121 (864)
+. ....-.+.++++ +++++|+++||+...
T Consensus 208 ~~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 208 PPGARFRVGHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 11 122334556665 379999999998654
No 347
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.72 E-value=0.019 Score=53.92 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=25.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
..+|+|-||-|+||||||++++++....
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~ 31 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK 31 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc
Confidence 4699999999999999999999998743
No 348
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.71 E-value=0.056 Score=58.72 Aligned_cols=40 Identities=25% Similarity=0.294 Sum_probs=30.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh-hccCCCeEEEEEccC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK-KDMLFDEVVFAEVSE 56 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~-~~~~f~~~~~v~~~~ 56 (864)
.+++.++|++|+||||++.+++.... .+ .-..+..|+...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~-~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY-GKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEECCc
Confidence 46999999999999999999988765 22 134577777654
No 349
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.035 Score=53.37 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=24.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
+..+-|.++|++|.|||-+|++|+++-.
T Consensus 209 dppkgvllygppgtgktl~aravanrtd 236 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVANRTD 236 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhcccC
Confidence 4567899999999999999999998754
No 350
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.67 E-value=0.03 Score=56.50 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
+.|.|.|.+|.||||+|+++......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 67999999999999999999998776
No 351
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.66 E-value=0.097 Score=54.76 Aligned_cols=62 Identities=23% Similarity=0.221 Sum_probs=39.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC-CChHHHHHHHHHHhCCccc
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET-PDIGKIQGELADQLGMKFS 76 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~~~ 76 (864)
+.++|.++||.|+||||-..+++....-...-..+..|+...- -...+.++.-++-++.+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~ 264 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE 264 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE
Confidence 3689999999999999877666666552112345667766542 2344445555666666554
No 352
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.65 E-value=0.024 Score=51.49 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=27.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAE 53 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~ 53 (864)
.-.+++|.|+.|.|||||++.++..... ..+.+|++
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~ 60 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWG 60 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEEC
Confidence 3469999999999999999999876542 24445543
No 353
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.65 E-value=0.023 Score=52.95 Aligned_cols=125 Identities=18% Similarity=0.155 Sum_probs=63.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC--ChHHHHHHHHHHhCCccccchhhhhccccccCCC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP--DIGKIQGELADQLGMKFSQGEIADQRGMKFSQES 92 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 92 (864)
.-.+++|.|+.|.|||||.+.++..... ..+.++++-.... +..+. ..+.++.- .+ -.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~---~~~~i~~~-~q-------------LS 84 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKP---DSGEILVDGKEVSFASPRDA---RRAGIAMV-YQ-------------LS 84 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEECCcCCHHHH---HhcCeEEE-Ee-------------cC
Confidence 3469999999999999999999876432 3455555432211 11111 01111100 00 11
Q ss_pred ChhhHHHHHHHHHhcCCeEEEEEcCCCchhc---cccccCCCCC-CCCCcEEEEEeCChHHHhhcCCceEEc
Q 002939 93 DVPGRARKLYARLQKENKILVILDNIWEDLD---LEKVGVPSGN-DWRGCKVLLTARDRHVLGSIGSKTFQI 160 (864)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~---~~~l~~~~~~-~~~gs~IivTtR~~~v~~~~~~~~~~l 160 (864)
..+.....+.+.+. .+.-++++|+....-| .+.+...+.. ...|..||++|.+.........+.+.+
T Consensus 85 ~G~~qrl~laral~-~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l 155 (163)
T cd03216 85 VGERQMVEIARALA-RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVL 155 (163)
T ss_pred HHHHHHHHHHHHHh-cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 11222334455555 5677888998643211 1222111111 123567888998876554433344433
No 354
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.63 E-value=0.011 Score=56.96 Aligned_cols=26 Identities=50% Similarity=0.685 Sum_probs=23.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
||+|.|++|+||||+|+++.......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 79999999999999999999988753
No 355
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.62 E-value=0.07 Score=54.01 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=31.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE 56 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 56 (864)
..+++.|.|++|+|||++|.+++.....+ -..++|++..+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 34799999999999999999987765433 34688888764
No 356
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.61 E-value=0.047 Score=56.80 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 002939 19 IGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 19 i~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
+++.|++|+||||+++.+.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999998875
No 357
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.60 E-value=0.05 Score=62.63 Aligned_cols=89 Identities=19% Similarity=0.224 Sum_probs=59.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
.+++-|+|++|+|||||+.+++...... -..++|++..+.++. ..++.++.+... .........+
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~--------llv~~~~~~E 124 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDS--------LLVSQPDTGE 124 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhH--------eEEecCCCHH
Confidence 4789999999999999998877655433 356899998877764 367777765331 1122233344
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCC
Q 002939 96 GRARKLYARLQKENKILVILDNIW 119 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~ 119 (864)
+....+...+.+++--|||+|.+.
T Consensus 125 ~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 125 QALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHHHHHHHhhcCCCeEEEEcchh
Confidence 444444444544566799999875
No 358
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.59 E-value=0.069 Score=57.28 Aligned_cols=56 Identities=16% Similarity=0.096 Sum_probs=36.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC-ChHHHHHHHHHHhCC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP-DIGKIQGELADQLGM 73 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~ 73 (864)
.++|.++|+.|+||||.+.+++.....++ ..+..|++..-. ...+-++..++..+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G--~kV~lV~~D~~R~aA~eQLk~~a~~~~v 156 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKG--FKPCLVCADTFRAGAFDQLKQNATKARI 156 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEcCcccchhHHHHHHHHhhccCC
Confidence 57999999999999999999998776442 245566654321 222333444544443
No 359
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.58 E-value=0.098 Score=52.63 Aligned_cols=47 Identities=26% Similarity=0.317 Sum_probs=38.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHH
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKI 63 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 63 (864)
..+++=|+|+.|.||||+|.+++-..... -..++|++.-..++++.+
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~ 105 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERA 105 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHH
Confidence 34799999999999999998877665543 347999999998888766
No 360
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.58 E-value=0.019 Score=54.53 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=27.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAE 53 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~ 53 (864)
.-.+++|.|+.|.|||||++.++..... ..+.++++
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~ 60 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEP---DSGSILID 60 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEEC
Confidence 3469999999999999999999865432 34555553
No 361
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.57 E-value=0.15 Score=50.83 Aligned_cols=54 Identities=28% Similarity=0.370 Sum_probs=37.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGM 73 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 73 (864)
.-..+.|.|.+|+||||+|.+++.....+ -..++|++... +.+++.+. +++++.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~--~~~~i~~~-~~~~g~ 72 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEE--SRESIIRQ-AAQFGM 72 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccC--CHHHHHHH-HHHhCC
Confidence 45799999999999999999887654332 35688888743 34444433 445543
No 362
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.034 Score=63.46 Aligned_cols=147 Identities=14% Similarity=0.211 Sum_probs=87.7
Q ss_pred chHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccC-----CCeEEEEEccCCCChHHHHHHHHHHhCCccc
Q 002939 2 STLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDML-----FDEVVFAEVSETPDIGKIQGELADQLGMKFS 76 (864)
Q Consensus 2 ~~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~-----f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~ 76 (864)
.|+++.++.|....-.--.++|.+|+|||++|..++......+- ...++-++++ .-+
T Consensus 177 ~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g-------------~Lv----- 238 (786)
T COG0542 177 EEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG-------------SLV----- 238 (786)
T ss_pred HHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH-------------HHh-----
Confidence 57888999998655555678999999999999999988654321 1112222211 111
Q ss_pred cchhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchh----------cccc-ccCCCCCCCCCcEEEEEeC
Q 002939 77 QGEIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDL----------DLEK-VGVPSGNDWRGCKVLLTAR 145 (864)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~----------~~~~-l~~~~~~~~~gs~IivTtR 145 (864)
.|.++ ..+..+.+..+.+.+.+.++..+++|.+.... |... +.+++..+ .--.|=-||-
T Consensus 239 -------AGaky--RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-eL~~IGATT~ 308 (786)
T COG0542 239 -------AGAKY--RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-ELRCIGATTL 308 (786)
T ss_pred -------ccccc--cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-CeEEEEeccH
Confidence 11111 34556677777777776679999999875431 1112 22333322 1223444554
Q ss_pred ChH---HHh----hcCCceEEcCCCCHHHHHHHHHHhh
Q 002939 146 DRH---VLG----SIGSKTFQIDVLNEEEAWTLFKKMT 176 (864)
Q Consensus 146 ~~~---v~~----~~~~~~~~l~~L~~~e~~~l~~~~~ 176 (864)
++. +-. ..+-+.+.+..-+.+++..+++-..
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 331 111 1115778999999999999887654
No 363
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.54 E-value=0.074 Score=50.77 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=28.6
Q ss_pred HhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 10 ALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 10 ~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
++.+....-|.+||--|+|||.|++++.+....+
T Consensus 79 F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~ 112 (287)
T COG2607 79 FAEGLPANNVLLWGARGTGKSSLVKALLNEYADE 112 (287)
T ss_pred HHcCCcccceEEecCCCCChHHHHHHHHHHHHhc
Confidence 3444556789999999999999999999998865
No 364
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.54 E-value=0.044 Score=52.06 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.-.+++|.|+.|.|||||++.++....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999988654
No 365
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.50 E-value=0.0048 Score=35.08 Aligned_cols=19 Identities=32% Similarity=0.648 Sum_probs=9.7
Q ss_pred ccEEeCCCCCCccCchhhc
Q 002939 411 LEILSLQGCDIEHLPREIG 429 (864)
Q Consensus 411 L~~L~l~~~~i~~lp~~~~ 429 (864)
|++||+++|+++.+|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 366
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.038 Score=57.17 Aligned_cols=86 Identities=30% Similarity=0.350 Sum_probs=58.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
-.+|.|-|-+|+|||||.-+++.+...+. .+.||+.-+ +..++ +--++.|+.....- ..-.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l------------~l~aE 154 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEE--SLQQI-KLRADRLGLPTNNL------------YLLAE 154 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCc--CHHHH-HHHHHHhCCCccce------------EEehh
Confidence 37999999999999999999999988763 688876443 44443 34455565432200 01122
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCC
Q 002939 96 GRARKLYARLQKENKILVILDNIW 119 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~ 119 (864)
...+.|.+.+.+.+.-++|+|-+.
T Consensus 155 t~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 155 TNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred cCHHHHHHHHHhcCCCEEEEeccc
Confidence 345667777776788899999885
No 367
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.45 E-value=0.014 Score=53.27 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 688999999999999999987654
No 368
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.036 Score=54.81 Aligned_cols=28 Identities=32% Similarity=0.390 Sum_probs=25.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
+..++|||++|.|||-+|+.|+....+.
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~n 193 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVN 193 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCc
Confidence 4689999999999999999999988765
No 369
>PRK06762 hypothetical protein; Provisional
Probab=95.43 E-value=0.013 Score=54.95 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
.++|+|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999886
No 370
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.42 E-value=0.029 Score=52.98 Aligned_cols=35 Identities=31% Similarity=0.312 Sum_probs=27.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAE 53 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~ 53 (864)
-.+++|.|+.|.|||||++.++..... ..+.++++
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~ 60 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLKP---DSGEIKVL 60 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEEC
Confidence 469999999999999999999876432 34555554
No 371
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.41 E-value=0.037 Score=50.14 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=28.7
Q ss_pred HhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 10 ALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 10 ~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
.+..++..+|+++|.+|.||||+|.++......+
T Consensus 17 ~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 17 ALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred HHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 3344566799999999999999999999988765
No 372
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.40 E-value=0.038 Score=59.28 Aligned_cols=95 Identities=16% Similarity=0.224 Sum_probs=53.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-hHHHHHHHHHHhCCccccchhhhhccccccC-CC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPD-IGKIQGELADQLGMKFSQGEIADQRGMKFSQ-ES 92 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~~ 92 (864)
+...++|.|..|+|||||+++++.... .+.++++-+.+... +.++..+....-+... .-..... ++
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~r--------svvv~atsd~ 224 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLAR--------SVVVVATSDE 224 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCcee--------EEEEEECCCC
Confidence 447899999999999999999997654 24556666665433 3344433332211110 0000000 11
Q ss_pred Ch------hhHHHHHHHHHh-cCCeEEEEEcCCCch
Q 002939 93 DV------PGRARKLYARLQ-KENKILVILDNIWED 121 (864)
Q Consensus 93 ~~------~~~~~~~~~~l~-~~~~~LlvlDdv~~~ 121 (864)
.. ....-.+.++++ +++++|+++||+...
T Consensus 225 ~~~~r~~a~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 225 PALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 11 112233455553 589999999999654
No 373
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.40 E-value=0.045 Score=58.58 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=57.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh-----------ccCCCeEEEEEccCCCChHHHHHHHHHHhC-Cccccchhhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKK-----------DMLFDEVVFAEVSETPDIGKIQGELADQLG-MKFSQGEIAD 82 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~-----------~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~ 82 (864)
+-+.++|.|-+|+|||||+.++.+.... ++.-..+++.-+.+.....+.+.+.+..-+ ....
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rt------ 213 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERV------ 213 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceE------
Confidence 3468999999999999999999987652 001115677777776555554444444333 1110
Q ss_pred hccccccC-CCCh------hhHHHHHHHHHh--cCCeEEEEEcCCCch
Q 002939 83 QRGMKFSQ-ESDV------PGRARKLYARLQ--KENKILVILDNIWED 121 (864)
Q Consensus 83 ~~~~~~~~-~~~~------~~~~~~~~~~l~--~~~~~LlvlDdv~~~ 121 (864)
-..... ++.. ....-.+.++++ +++++|+++||+...
T Consensus 214 --vvv~atsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 214 --CLFLNLANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred --EEEEECCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 000000 1111 112234556666 489999999998544
No 374
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.39 E-value=0.083 Score=57.93 Aligned_cols=87 Identities=26% Similarity=0.392 Sum_probs=52.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
..++.|.|.+|+||||++.+++.....+ -..++|++..+ +..++... ++.++..... .......+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~--------l~~~~e~~-- 144 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEE--SASQIKLR-AERLGLPSDN--------LYLLAETN-- 144 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccc--cHHHHHHH-HHHcCCChhc--------EEEeCCCC--
Confidence 4699999999999999999999887633 24678888644 34444322 4555542210 11111112
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCC
Q 002939 96 GRARKLYARLQKENKILVILDNIW 119 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~ 119 (864)
.+.+.+.+.+.+.-++|+|.+.
T Consensus 145 --l~~i~~~i~~~~~~lVVIDSIq 166 (446)
T PRK11823 145 --LEAILATIEEEKPDLVVIDSIQ 166 (446)
T ss_pred --HHHHHHHHHhhCCCEEEEechh
Confidence 3344444544455689999874
No 375
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.38 E-value=0.065 Score=53.49 Aligned_cols=95 Identities=11% Similarity=0.182 Sum_probs=52.8
Q ss_pred CccEEEEEcCCCCcHHHHH-HHHHHHhhhccCCCeE-EEEEccCCC-ChHHHHHHHHHHhCCccccchhhhhccccccC-
Q 002939 15 DISIIGMYGMGGVGKTTLV-KEVARRAKKDMLFDEV-VFAEVSETP-DIGKIQGELADQLGMKFSQGEIADQRGMKFSQ- 90 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa-~~~~~~~~~~~~f~~~-~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~- 90 (864)
+-+.++|.|.+|+|||+|| .++.+... -+.+ +++-+.+.. ...++..++...-..... -.....
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~~----~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~t--------vvv~~t~ 135 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQKG----KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYT--------IVVAATA 135 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhcC----CCeEEEEEecccchHHHHHHHHHHHhcCcccee--------EEEEeCC
Confidence 3468999999999999996 55655421 3444 777776653 455555555532111100 000000
Q ss_pred CCChhh------HHHHHHHHHh-cCCeEEEEEcCCCch
Q 002939 91 ESDVPG------RARKLYARLQ-KENKILVILDNIWED 121 (864)
Q Consensus 91 ~~~~~~------~~~~~~~~l~-~~~~~LlvlDdv~~~ 121 (864)
++.... ..-.+.++++ +++.+|||+||+...
T Consensus 136 d~~~~~r~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 136 SDPAPLQYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 111111 1233444444 479999999999655
No 376
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.37 E-value=0.0064 Score=34.55 Aligned_cols=21 Identities=33% Similarity=0.314 Sum_probs=14.1
Q ss_pred CceEEEEeccccccCCccccc
Q 002939 365 KLKVLLFIRMRLLSLPSSIRL 385 (864)
Q Consensus 365 ~Lr~L~L~~~~i~~lp~~~~~ 385 (864)
+|++||+++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777666554
No 377
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=95.36 E-value=0.047 Score=55.44 Aligned_cols=104 Identities=23% Similarity=0.333 Sum_probs=62.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC-CChHHHHHHHHHHhCCcccc---chhhhhccccccC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET-PDIGKIQGELADQLGMKFSQ---GEIADQRGMKFSQ 90 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~ 90 (864)
+-.-|++.|-+|+|||.+.+.+.+....+ |-...+|..+.+. ..-.+++.++.+.-..+... .+++..-+....-
T Consensus 146 kGgKiGLFGGAGVGKTVl~~ELI~Nia~~-h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RV 224 (468)
T COG0055 146 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRV 224 (468)
T ss_pred cCceeeeeccCCccceeeHHHHHHHHHHH-cCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeee
Confidence 34689999999999999999999998753 4455678877664 45668888887763222111 1122222221111
Q ss_pred CCChhhHHHHHHHHHhcCCeEEEEEcCCCch
Q 002939 91 ESDVPGRARKLYARLQKENKILVILDNIWED 121 (864)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 121 (864)
....-..++..++. +++.+|+.+||+..-
T Consensus 225 altGlT~AEyfRD~--~gqdVLlFIDNIfRf 253 (468)
T COG0055 225 ALTGLTMAEYFRDE--EGQDVLLFIDNIFRF 253 (468)
T ss_pred hhhhhhHHHHhhcc--cCCeEEEEehhhhHH
Confidence 11112222222222 278999999999655
No 378
>PRK08233 hypothetical protein; Provisional
Probab=95.35 E-value=0.014 Score=55.76 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
..+|+|.|++|+||||+|+.++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 379
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.35 E-value=0.016 Score=55.25 Aligned_cols=29 Identities=38% Similarity=0.607 Sum_probs=26.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
++.+|+|.|.+|.||||+|+.++....+.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 45799999999999999999999998754
No 380
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.31 E-value=0.016 Score=55.71 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
++++|+|.|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999999999999765
No 381
>PTZ00301 uridine kinase; Provisional
Probab=95.31 E-value=0.029 Score=54.40 Aligned_cols=26 Identities=27% Similarity=0.567 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
..+|+|.|.+|.||||+|+.+.....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999988764
No 382
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.31 E-value=0.017 Score=56.66 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=24.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
.+..+|+|.|++|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999886
No 383
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.30 E-value=0.017 Score=63.13 Aligned_cols=41 Identities=15% Similarity=0.301 Sum_probs=34.6
Q ss_pred chHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 2 STLKNVQNALL------DPDISIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 2 ~~~~~i~~~l~------~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
..+++|+++|. +.+.+++.++||+|+||||||+.+++-...
T Consensus 83 e~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 83 EAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 46788898882 456689999999999999999999997654
No 384
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.30 E-value=0.096 Score=51.46 Aligned_cols=41 Identities=22% Similarity=0.171 Sum_probs=28.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP 58 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~ 58 (864)
+|+|.|+.|+||||+|+.+.........-..+..++...-+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 58999999999999999999876531111234555555443
No 385
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.28 E-value=0.036 Score=49.83 Aligned_cols=39 Identities=21% Similarity=0.381 Sum_probs=29.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE 56 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 56 (864)
++|.|+|+.|+|||||++.+.+....+ .+...++.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 489999999999999999999998764 355666777655
No 386
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.28 E-value=0.13 Score=55.11 Aligned_cols=60 Identities=23% Similarity=0.191 Sum_probs=37.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC-CChHHHHHHHHHHhCCc
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET-PDIGKIQGELADQLGMK 74 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~ 74 (864)
+..+|+++|+.|+||||++.+++.........+.+.++..... ....+.+...++.++.+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp 250 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVS 250 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCc
Confidence 3479999999999999999999886433222234444444331 22333345555555544
No 387
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.27 E-value=0.032 Score=59.58 Aligned_cols=95 Identities=18% Similarity=0.255 Sum_probs=53.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-hHHHHHHHHHHhCCccccchhhhhccccccC-CC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPD-IGKIQGELADQLGMKFSQGEIADQRGMKFSQ-ES 92 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~~ 92 (864)
+...++|.|..|+|||||++.++.... .+.+++.-+.+... +.++.+++...-+.... -..... ++
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rt--------vvv~atsd~ 228 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARS--------VVVAAPADT 228 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccE--------EEEEECCCC
Confidence 346899999999999999999986432 35666666665533 44454444322111100 000000 11
Q ss_pred Ch------hhHHHHHHHHHh-cCCeEEEEEcCCCch
Q 002939 93 DV------PGRARKLYARLQ-KENKILVILDNIWED 121 (864)
Q Consensus 93 ~~------~~~~~~~~~~l~-~~~~~LlvlDdv~~~ 121 (864)
.. ....-.+.++++ +++++|+++||+...
T Consensus 229 p~~~R~~a~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 229 SPLMRLKGCETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 11 112223445553 489999999998654
No 388
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.25 E-value=0.064 Score=57.67 Aligned_cols=98 Identities=22% Similarity=0.330 Sum_probs=58.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC-ChHHHHHHHHHHhCCccccchhhhhccccccC-CC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP-DIGKIQGELADQLGMKFSQGEIADQRGMKFSQ-ES 92 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~~ 92 (864)
+-+.++|.|.+|+|||||+.+++...... +-+.++++-+.+.. .+.+++.++...=.... .-..... ++
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~r--------tvvV~atsd~ 212 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDK--------TALVYGQMNE 212 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcce--------eEEEEECCCC
Confidence 34789999999999999999999876543 23567788776653 35556555543211100 0000000 11
Q ss_pred Ch------hhHHHHHHHHHh--cCCeEEEEEcCCCch
Q 002939 93 DV------PGRARKLYARLQ--KENKILVILDNIWED 121 (864)
Q Consensus 93 ~~------~~~~~~~~~~l~--~~~~~LlvlDdv~~~ 121 (864)
+. ....-.+.++++ +++++|+++||+...
T Consensus 213 p~~~R~~a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 213 PPGARMRVALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 11 112334556664 379999999999655
No 389
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.25 E-value=0.037 Score=60.35 Aligned_cols=98 Identities=16% Similarity=0.145 Sum_probs=52.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCe-EEEEEccCCC-ChHHHHHHHHHHhCCccccchhhhhccccccCCC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDE-VVFAEVSETP-DIGKIQGELADQLGMKFSQGEIADQRGMKFSQES 92 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 92 (864)
+-....|+|++|+|||||++++++..... +-+. ++++-+.+.. .+.++ .+.+....-.......... ..
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~n-~~~~~~ivvLIgERpeEVtdm----~rsVkgeVVasT~D~p~~~----~~ 485 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITTN-NPECHLMVVLVDERPEEVTDM----QRSVKGEVIASTFDRPPSD----HT 485 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEeCchhhHHHH----HHhccceEEEECCCCCHHH----HH
Confidence 34688999999999999999999876542 2233 3455555543 23333 3333111100000000000 00
Q ss_pred ChhhHHHHHHHHHh-cCCeEEEEEcCCCch
Q 002939 93 DVPGRARKLYARLQ-KENKILVILDNIWED 121 (864)
Q Consensus 93 ~~~~~~~~~~~~l~-~~~~~LlvlDdv~~~ 121 (864)
........+-+++. +++.+||++|++...
T Consensus 486 ~~a~~ai~~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 486 TVAELAIERAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeCchHH
Confidence 01222334455554 589999999999655
No 390
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.23 E-value=0.11 Score=56.71 Aligned_cols=59 Identities=20% Similarity=0.165 Sum_probs=38.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC-CChHHHHHHHHHHhCCc
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET-PDIGKIQGELADQLGMK 74 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~ 74 (864)
.+|++++|+.|+||||.+.+++.....+.....+..++.... ....+-++..++..+..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 479999999999999999999987654322224566665432 12334444555555543
No 391
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.22 E-value=0.048 Score=49.25 Aligned_cols=36 Identities=14% Similarity=-0.018 Sum_probs=28.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAE 53 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~ 53 (864)
.+.|+|+.|.|||+.+..++.+.........++|+.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 578999999999999999888876543455667764
No 392
>PRK08149 ATP synthase SpaL; Validated
Probab=95.22 E-value=0.048 Score=58.45 Aligned_cols=95 Identities=13% Similarity=0.220 Sum_probs=53.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC-CChHHHHHHHHHHhCCccccchhhhhccccccCC-C
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET-PDIGKIQGELADQLGMKFSQGEIADQRGMKFSQE-S 92 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~ 92 (864)
+...++|.|.+|+|||||+..++.... -+.+++..+... .++.++..+.......... ....... +
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~--------~vV~~~sd~ 217 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKC--------VLVYATSDF 217 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccce--------EEEEECCCC
Confidence 346899999999999999999887543 244444444433 3455555555443221100 0000001 1
Q ss_pred C------hhhHHHHHHHHHh-cCCeEEEEEcCCCch
Q 002939 93 D------VPGRARKLYARLQ-KENKILVILDNIWED 121 (864)
Q Consensus 93 ~------~~~~~~~~~~~l~-~~~~~LlvlDdv~~~ 121 (864)
. .......+.++++ +++++|+++||+...
T Consensus 218 p~~~r~~a~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 218 SSVDRCNAALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred CHHHHHhHHHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 1 1122334444553 489999999998654
No 393
>PRK03839 putative kinase; Provisional
Probab=95.20 E-value=0.017 Score=54.99 Aligned_cols=24 Identities=46% Similarity=0.619 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.|.|.|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999874
No 394
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.19 E-value=0.012 Score=50.72 Aligned_cols=25 Identities=44% Similarity=0.565 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 19 IGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 19 i~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
|.|+|.+|+||||+|+.++......
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~ 26 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS 26 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc
Confidence 6799999999999999999987654
No 395
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=0.0027 Score=58.67 Aligned_cols=39 Identities=26% Similarity=0.391 Sum_probs=19.6
Q ss_pred ccccEEEecCccchHHhhhccccccCcceeeccccCeeecCccccc
Q 002939 736 VQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRLQSL 781 (864)
Q Consensus 736 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L 781 (864)
++|++|+|++|+.+++-....+.. |++|+.|.|.+.+..
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~-------lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLK-------LKNLRRLHLYDLPYV 189 (221)
T ss_pred cchheeeccCCCeechhHHHHHHH-------hhhhHHHHhcCchhh
Confidence 455555555555555544333332 555555555554443
No 396
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.18 E-value=0.081 Score=57.38 Aligned_cols=99 Identities=18% Similarity=0.180 Sum_probs=58.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCC--CeEEEEEccCCC-ChHHHHHHHHHHhCCccccchhhhhccccccC-
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLF--DEVVFAEVSETP-DIGKIQGELADQLGMKFSQGEIADQRGMKFSQ- 90 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~- 90 (864)
+-+.++|.|.+|+|||||+.++++.....+.+ ..++++-+.+.. .+.++..++...=..... -.....
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rt--------vvv~ats 211 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERA--------VVFLNLA 211 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceE--------EEEEECC
Confidence 34689999999999999999999876532111 257788887654 355555555432111100 000000
Q ss_pred CCC------hhhHHHHHHHHHh--cCCeEEEEEcCCCch
Q 002939 91 ESD------VPGRARKLYARLQ--KENKILVILDNIWED 121 (864)
Q Consensus 91 ~~~------~~~~~~~~~~~l~--~~~~~LlvlDdv~~~ 121 (864)
++. .......+.++++ +++++|+++||+...
T Consensus 212 d~p~~~R~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 212 DDPAVERIVTPRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 111 1122334566666 589999999998654
No 397
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.18 E-value=0.018 Score=56.35 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
...+|+|.|++|+||||||+.++....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999999998754
No 398
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.17 E-value=0.14 Score=52.48 Aligned_cols=52 Identities=25% Similarity=0.165 Sum_probs=37.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHH
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQ 70 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~ 70 (864)
..++.|.|++|+||||++.+++.....+ +-..++|+++.. ...++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEccc--CHHHHHHHHHHH
Confidence 3689999999999999999998876433 124578887655 345555555444
No 399
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.16 E-value=0.029 Score=49.43 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=28.3
Q ss_pred HHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 5 KNVQNALLD--PDISIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 5 ~~i~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
+++.+.|.. ....+|.+.|.-|+||||+++.++.....
T Consensus 9 ~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 9 DKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 344444432 23469999999999999999999998653
No 400
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.16 E-value=0.042 Score=54.60 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=29.4
Q ss_pred HHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 6 NVQNALLD-PDISIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 6 ~i~~~l~~-~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
++..+... .+..+|+|.|+.|.|||||++.+.......
T Consensus 22 ~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 22 RLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred HHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 33333333 456799999999999999999999887654
No 401
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.14 E-value=0.034 Score=50.71 Aligned_cols=36 Identities=22% Similarity=0.422 Sum_probs=30.6
Q ss_pred chHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 2 STLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 2 ~~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
+.++++.+++.+ +++++.|..|+|||||+..+..+.
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 356778888876 699999999999999999998764
No 402
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.14 E-value=0.093 Score=56.65 Aligned_cols=45 Identities=9% Similarity=0.065 Sum_probs=33.2
Q ss_pred CccEEEEEcCCCCcHHHHH-HHHHHHhhh-----ccCCCeEEEEEccCCCC
Q 002939 15 DISIIGMYGMGGVGKTTLV-KEVARRAKK-----DMLFDEVVFAEVSETPD 59 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa-~~~~~~~~~-----~~~f~~~~~v~~~~~~~ 59 (864)
+-+.++|.|..|+|||+|| ..+.+.... ...-+.++|+-+.+..+
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~r 238 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCS 238 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchH
Confidence 3468999999999999997 666776532 12346788998887654
No 403
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.12 E-value=0.039 Score=59.24 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=50.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh-
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV- 94 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~- 94 (864)
...++|+|++|+|||||++.++..... ...++++..-+..++.++............ ..+..-.++..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rt--------I~vV~qsd~~~~ 233 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKA--------VAVVATSDESPM 233 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCe--------EEEEEcCCCCHH
Confidence 468999999999999999988764332 223444433233445544443333221000 00000001111
Q ss_pred -----hhHHHHHHHHHh-cCCeEEEEEcCCCch
Q 002939 95 -----PGRARKLYARLQ-KENKILVILDNIWED 121 (864)
Q Consensus 95 -----~~~~~~~~~~l~-~~~~~LlvlDdv~~~ 121 (864)
....-.+.++++ +++.+|+++||+...
T Consensus 234 ~r~~~~~~a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 234 MRRLAPLTATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEeccchHHH
Confidence 112233444444 489999999998654
No 404
>PRK04040 adenylate kinase; Provisional
Probab=95.12 E-value=0.019 Score=54.76 Aligned_cols=26 Identities=31% Similarity=0.593 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
..+|+|+|++|+||||+++.+.....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999999999874
No 405
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.12 E-value=0.23 Score=51.62 Aligned_cols=39 Identities=31% Similarity=0.394 Sum_probs=30.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEcc
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVS 55 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~ 55 (864)
+..+++++|++|+||||++..++.....+ -..+..+++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~--g~~V~Li~~D 151 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ--GKKVLLAAGD 151 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCeEEEEecC
Confidence 45799999999999999999999887644 2245555543
No 406
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.11 E-value=0.021 Score=58.03 Aligned_cols=54 Identities=20% Similarity=0.310 Sum_probs=33.1
Q ss_pred HHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHH
Q 002939 6 NVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGK 62 (864)
Q Consensus 6 ~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~ 62 (864)
.+++.+...+ +-+.++|+.|+|||++++.......... | .+.-++.+...+...
T Consensus 24 ~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~~-~-~~~~~~~s~~Tts~~ 77 (272)
T PF12775_consen 24 YLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSDK-Y-LVITINFSAQTTSNQ 77 (272)
T ss_dssp HHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTCC-E-EEEEEES-TTHHHHH
T ss_pred HHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCccc-c-ceeEeeccCCCCHHH
Confidence 3444554444 5669999999999999999886544321 1 234455555433433
No 407
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.08 E-value=0.68 Score=47.16 Aligned_cols=66 Identities=15% Similarity=0.152 Sum_probs=41.6
Q ss_pred CCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCCh-HHHhhcC--CceEEcCCCCHHHHHHHHHH
Q 002939 108 ENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARDR-HVLGSIG--SKTFQIDVLNEEEAWTLFKK 174 (864)
Q Consensus 108 ~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~-~v~~~~~--~~~~~l~~L~~~e~~~l~~~ 174 (864)
+++-++|+|+++... ..+.+...+-....++.+|++|.+. .+..... ...+.+.. +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 566799999998663 4555555554444456667766554 4444333 67778876 66666666654
No 408
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.06 E-value=0.032 Score=51.79 Aligned_cols=125 Identities=19% Similarity=0.207 Sum_probs=64.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
-.+++|.|..|.||||+++.++..... ..+.++++........ .......++.... .....
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~~~~~~~~~~~--~~~~~~~i~~~~q--------------lS~G~ 85 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDGKDIAKLP--LEELRRRIGYVPQ--------------LSGGQ 85 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccCC--HHHHHhceEEEee--------------CCHHH
Confidence 369999999999999999999876542 3555665543221110 0011111110000 00111
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCchh---ccccccCCCCC-CCCCcEEEEEeCChHHHhhcCCceEEc
Q 002939 96 GRARKLYARLQKENKILVILDNIWEDL---DLEKVGVPSGN-DWRGCKVLLTARDRHVLGSIGSKTFQI 160 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~~~---~~~~l~~~~~~-~~~gs~IivTtR~~~v~~~~~~~~~~l 160 (864)
.....+.+.+. .+.-++++|+....- ....+...+.. ...+..|+++|.+........++.+.+
T Consensus 86 ~~r~~l~~~l~-~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l 153 (157)
T cd00267 86 RQRVALARALL-LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVL 153 (157)
T ss_pred HHHHHHHHHHh-cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 22233455554 567889999875331 12222111111 112457888988887766543344444
No 409
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.05 E-value=0.16 Score=58.43 Aligned_cols=60 Identities=20% Similarity=0.194 Sum_probs=39.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC-ChHHHHHHHHHHhCCcc
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP-DIGKIQGELADQLGMKF 75 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~ 75 (864)
.++|.++|+.|+||||.+.+++...........+..++..... ...+.++...+.++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc
Confidence 4799999999999999999999876433222356666654321 24455566666666543
No 410
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.04 E-value=0.083 Score=50.45 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.+.|+|+|++|+||+||+..+.....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~ 27 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIP 27 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCC
Confidence 46899999999999999999998853
No 411
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.04 E-value=0.052 Score=48.78 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.|+|+|+.|+|||||++.+.....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999998754
No 412
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.03 E-value=0.02 Score=50.97 Aligned_cols=46 Identities=33% Similarity=0.540 Sum_probs=35.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccc
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFS 76 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~ 76 (864)
+|.|-|++|.||||+|+.++++..-+ ++ +.-.+++++++..|.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gmsl~ 47 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMSLE 47 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCCHH
Confidence 68999999999999999999997643 11 223467888888876543
No 413
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.00 E-value=0.057 Score=55.81 Aligned_cols=95 Identities=20% Similarity=0.295 Sum_probs=52.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC-CCChHHHHHHHHHHhCCccccchhhhhccccccC-CC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE-TPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQ-ES 92 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~~ 92 (864)
+...++|.|..|+|||||++.++..... +..++.-+.. ...+.++.......-+..... +.... ++
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtv--------vv~~t~d~ 135 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTTA----DVNVIALIGERGREVREFIEKDLGEEGLKRSV--------VVVATSDE 135 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCC----CEEEEEEEecCCccHHHHHHHHHhcCccceEE--------EEEcCCCC
Confidence 3468999999999999999998876442 3344444433 334555554444332211100 00000 11
Q ss_pred Ch------hhHHHHHHHHHh-cCCeEEEEEcCCCch
Q 002939 93 DV------PGRARKLYARLQ-KENKILVILDNIWED 121 (864)
Q Consensus 93 ~~------~~~~~~~~~~l~-~~~~~LlvlDdv~~~ 121 (864)
.. ....-.+.++++ +++.+|+++||+...
T Consensus 136 ~~~~r~~~~~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 136 SPLLRVKAAYTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 11 112233444443 489999999998654
No 414
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.056 Score=53.84 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhc--cCCCeEEEEE
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKD--MLFDEVVFAE 53 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~--~~f~~~~~v~ 53 (864)
|+|.++||+|.|||+|.+++++...++ +.|....-+.
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 799999999999999999999987654 3344444443
No 415
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.98 E-value=0.041 Score=52.12 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=28.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAE 53 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~ 53 (864)
+..+|+|.|++|+||||+|+.++......+ ..+.+++
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g--~~v~~id 39 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAG--YPVEVLD 39 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEc
Confidence 456999999999999999999999875432 2344554
No 416
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.93 E-value=0.18 Score=56.12 Aligned_cols=138 Identities=22% Similarity=0.234 Sum_probs=73.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhc------cCCCeEEEEEccCCC-Ch----------------HHHHHHHHHHhC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKD------MLFDEVVFAEVSETP-DI----------------GKIQGELADQLG 72 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~------~~f~~~~~v~~~~~~-~~----------------~~~~~~i~~~l~ 72 (864)
-..|+|+|+.|+|||||.+.+....... ..--.+.|++-.... .. +.-.+..+..++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 4689999999999999999997654321 111224555543311 11 222233333332
Q ss_pred CccccchhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchhc---cccccCCCCCCCCCcEEEEEeCChHH
Q 002939 73 MKFSQGEIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDLD---LEKVGVPSGNDWRGCKVLLTARDRHV 149 (864)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~---~~~l~~~~~~~~~gs~IivTtR~~~v 149 (864)
.+.... ......-+..+..+-..-.+.-.+.-++|||.-.+.-| .+.+..++.. ..| .||+.|-++..
T Consensus 428 F~~~~~-------~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~-f~G-tvl~VSHDr~F 498 (530)
T COG0488 428 FTGEDQ-------EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD-FEG-TVLLVSHDRYF 498 (530)
T ss_pred CChHHH-------hCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh-CCC-eEEEEeCCHHH
Confidence 221100 00000111222233333333346888999997655433 2333333322 234 68999999999
Q ss_pred HhhcCCceEEcCC
Q 002939 150 LGSIGSKTFQIDV 162 (864)
Q Consensus 150 ~~~~~~~~~~l~~ 162 (864)
......+++.+++
T Consensus 499 l~~va~~i~~~~~ 511 (530)
T COG0488 499 LDRVATRIWLVED 511 (530)
T ss_pred HHhhcceEEEEcC
Confidence 8877767777765
No 417
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.93 E-value=0.16 Score=48.25 Aligned_cols=124 Identities=19% Similarity=0.184 Sum_probs=68.8
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhc-cCC--CeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhh
Q 002939 7 VQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKD-MLF--DEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQ 83 (864)
Q Consensus 7 i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~-~~f--~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 83 (864)
++..|-..+..-..|.|++|+||||+.+.+++-.... +.| ..+.-|+-+++ |+..+ ...++.+....
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersE---------Iag~~-~gvpq~~~g~R 197 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSE---------IAGCL-NGVPQHGRGRR 197 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccch---------hhccc-cCCchhhhhhh
Confidence 4445555566668899999999999999999876543 123 33555554432 33321 11122211111
Q ss_pred ccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchhccccccCCCCCCCCCcEEEEEeCChH
Q 002939 84 RGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDLDLEKVGVPSGNDWRGCKVLLTARDRH 148 (864)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~ 148 (864)
.++. +.....+ -+.........=++|+|.+...++-.++..++.. |.+++.|..--.
T Consensus 198 ~dVl--d~cpk~~---gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~~~---GVkli~TaHG~~ 254 (308)
T COG3854 198 MDVL--DPCPKAE---GMMMAIRSMSPEVIIVDEIGTEEDALAILTALHA---GVKLITTAHGNG 254 (308)
T ss_pred hhhc--ccchHHH---HHHHHHHhcCCcEEEEeccccHHHHHHHHHHHhc---CcEEEEeecccc
Confidence 1111 0111112 2222233346678999999888877666655543 778887775433
No 418
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.92 E-value=0.06 Score=50.73 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=27.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAE 53 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~ 53 (864)
.-.+++|.|+.|.|||||++.++.-... ..+.++++
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~---~~G~i~~~ 62 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDP---TSGEILID 62 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEEC
Confidence 3469999999999999999999886542 34445443
No 419
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=94.90 E-value=0.17 Score=55.00 Aligned_cols=105 Identities=21% Similarity=0.270 Sum_probs=59.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC-ChHHHHHHHHHHhCCccccchhhhhccccccC-CC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP-DIGKIQGELADQLGMKFSQGEIADQRGMKFSQ-ES 92 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~~ 92 (864)
+-+.++|.|.+|+|||||+.++....... +-+.++++-+.+.. ...+++.++...-..... .......-..... .+
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~-~~~~~rsvvv~atsd~ 237 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQ-NIAESKVALVYGQMNE 237 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHhcCccccC-cccccceEEEEECCCC
Confidence 34789999999999999999999885432 13778888887764 355555555441100000 0000000000000 11
Q ss_pred Ch------hhHHHHHHHHHhc-C-CeEEEEEcCCCch
Q 002939 93 DV------PGRARKLYARLQK-E-NKILVILDNIWED 121 (864)
Q Consensus 93 ~~------~~~~~~~~~~l~~-~-~~~LlvlDdv~~~ 121 (864)
.. ....-.+.++++. + +++||++||+...
T Consensus 238 p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 238 PPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 11 1223446667753 4 4999999999654
No 420
>PRK00625 shikimate kinase; Provisional
Probab=94.90 E-value=0.022 Score=53.28 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.|.++||+|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988764
No 421
>PHA02774 E1; Provisional
Probab=94.89 E-value=0.048 Score=59.81 Aligned_cols=49 Identities=16% Similarity=0.300 Sum_probs=35.2
Q ss_pred HHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC
Q 002939 5 KNVQNALLD-PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET 57 (864)
Q Consensus 5 ~~i~~~l~~-~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~ 57 (864)
..+..|+.. .+..-+.|+|++|+|||.+|-.+++-... ..+.|++....
T Consensus 422 ~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G----~vi~fvN~~s~ 471 (613)
T PHA02774 422 TALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKG----KVISFVNSKSH 471 (613)
T ss_pred HHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC----CEEEEEECccc
Confidence 344555554 33468999999999999999999988642 34667775433
No 422
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.87 E-value=0.085 Score=53.74 Aligned_cols=44 Identities=18% Similarity=0.071 Sum_probs=29.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET 57 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~ 57 (864)
...-+|+|.|..|+||||+|+.+..-......-..+..++...-
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f 103 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGF 103 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccc
Confidence 34579999999999999999887665542110123445555443
No 423
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.87 E-value=0.064 Score=51.14 Aligned_cols=50 Identities=28% Similarity=0.414 Sum_probs=36.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCcc
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKF 75 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~ 75 (864)
.|+|+|-||+||||+|..+......++. ..+.-|++...++ +.++||...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~-~~VLvVDaDpd~n-------L~~~LGve~ 51 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGG-YNVLVVDADPDSN-------LPEALGVEE 51 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCC-ceEEEEeCCCCCC-------hHHhcCCCC
Confidence 5899999999999999997777666543 3466777777654 445666544
No 424
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.86 E-value=0.052 Score=58.23 Aligned_cols=95 Identities=18% Similarity=0.262 Sum_probs=54.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-hHHHHHHHHHHhCCccccchhhhhccccccC-CC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPD-IGKIQGELADQLGMKFSQGEIADQRGMKFSQ-ES 92 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~~ 92 (864)
+...++|.|..|+|||||.+.+++... .+.++++-+.+..+ +.++.... ++... ....-..... ++
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~---l~~~~-----l~rtvvv~atsd~ 228 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESD---LGEEG-----LRKAVLVVATSDR 228 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHH---hcccc-----cceeEEEEECCCC
Confidence 446899999999999999999988754 35678887776543 44433332 22110 0000000000 11
Q ss_pred Chh------hHHHHHHHHHh-cCCeEEEEEcCCCch
Q 002939 93 DVP------GRARKLYARLQ-KENKILVILDNIWED 121 (864)
Q Consensus 93 ~~~------~~~~~~~~~l~-~~~~~LlvlDdv~~~ 121 (864)
... ...-.+.++++ +++++|+++||+...
T Consensus 229 p~~~R~~a~~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 229 PSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 111 11223444443 589999999999654
No 425
>PTZ00494 tuzin-like protein; Provisional
Probab=94.86 E-value=0.23 Score=52.16 Aligned_cols=152 Identities=13% Similarity=0.139 Sum_probs=88.1
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhc
Q 002939 5 KNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQR 84 (864)
Q Consensus 5 ~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 84 (864)
++++..+.-..+++++++|.-|+||++|.+......... .++|+++...| -++.+.++++.+.-+.
T Consensus 384 RqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~p-----aV~VDVRg~ED---tLrsVVKALgV~nve~------ 449 (664)
T PTZ00494 384 RSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVA-----LVHVDVGGTED---TLRSVVRALGVSNVEV------ 449 (664)
T ss_pred HHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCC-----eEEEEecCCcc---hHHHHHHHhCCCChhh------
Confidence 344444455678999999999999999999988876543 77899887644 4578888998764310
Q ss_pred cccccCCCChhhHHHHHHHHH--hcCCeEEEEEcCC--Cchh-ccccccCCCCCCCCCcEEEEEeCChHHHhhc----CC
Q 002939 85 GMKFSQESDVPGRARKLYARL--QKENKILVILDNI--WEDL-DLEKVGVPSGNDWRGCKVLLTARDRHVLGSI----GS 155 (864)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l--~~~~~~LlvlDdv--~~~~-~~~~l~~~~~~~~~gs~IivTtR~~~v~~~~----~~ 155 (864)
+ .+-.+-..+.....- ..++.-+||+-=- .+.. -+.+. ..+.....-+.|++----+.+.... +-
T Consensus 450 ----C-GDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~~n~~LPRL 523 (664)
T PTZ00494 450 ----C-GDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTPLNVSSRRL 523 (664)
T ss_pred ----h-ccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhchhhccCccc
Confidence 0 111111122222111 1255566666421 1111 11111 1222223345666554433322211 14
Q ss_pred ceEEcCCCCHHHHHHHHHHhh
Q 002939 156 KTFQIDVLNEEEAWTLFKKMT 176 (864)
Q Consensus 156 ~~~~l~~L~~~e~~~l~~~~~ 176 (864)
..|-+++|+.++|.++.++..
T Consensus 524 DFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 524 DFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred eeEecCCcCHHHHHHHHhccc
Confidence 678999999999999988864
No 426
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.81 E-value=0.2 Score=56.52 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=58.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccc--cccCCCC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGM--KFSQESD 93 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~--~~~~~~~ 93 (864)
.+++.|.|.+|+|||++|.+++.+.... -..++|++..+. +.++.+.+ +.++.+............ .......
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~--g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~ 347 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRR--GERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPESYG 347 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCcccCC
Confidence 4799999999999999999998876544 357889876553 55554443 556543321111000000 0111122
Q ss_pred hhhHHHHHHHHHhcCCeEEEEEcCCC
Q 002939 94 VPGRARKLYARLQKENKILVILDNIW 119 (864)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~LlvlDdv~ 119 (864)
..+....+.+.+.+.+.-++|+|.+.
T Consensus 348 ~~~~~~~i~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 348 LEDHLIIIKREIEEFKPSRVAIDPLS 373 (509)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 34445556665554455588999874
No 427
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.77 E-value=0.16 Score=55.76 Aligned_cols=88 Identities=26% Similarity=0.343 Sum_probs=51.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
..++.|.|.+|+||||++.+++...... -..++|++..+ +..++.. -++.++.... ........+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EE--s~~qi~~-ra~rlg~~~~--------~l~~~~e~~-- 158 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVSGEE--SLQQIKM-RAIRLGLPEP--------NLYVLSETN-- 158 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECcC--CHHHHHH-HHHHcCCChH--------HeEEcCCCC--
Confidence 4799999999999999999998876543 23578887643 3444332 2334432211 000111112
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCc
Q 002939 96 GRARKLYARLQKENKILVILDNIWE 120 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~ 120 (864)
.+.+.+.+.+.+.-++|+|.+..
T Consensus 159 --~~~I~~~i~~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 159 --WEQICANIEEENPQACVIDSIQT 181 (454)
T ss_pred --HHHHHHHHHhcCCcEEEEecchh
Confidence 23444455444556789998753
No 428
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.76 E-value=0.029 Score=53.23 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
...|.|+|++|+||||+|+.++....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999864
No 429
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.70 E-value=0.21 Score=51.90 Aligned_cols=39 Identities=28% Similarity=0.500 Sum_probs=30.0
Q ss_pred HHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 5 KNVQNALL--DPDISIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 5 ~~i~~~l~--~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
.+|++.+. ..+..+|+|.|.+|+||||++..+......+
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444443 2456799999999999999999998887754
No 430
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.70 E-value=0.023 Score=54.36 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
+|.|.|++|+||||+|+.++....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999988763
No 431
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.68 E-value=0.031 Score=52.07 Aligned_cols=24 Identities=54% Similarity=0.634 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 19 IGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 19 i~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
|.|+|.+|+||||+++++++..+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 789999999999999999998754
No 432
>PRK05922 type III secretion system ATPase; Validated
Probab=94.68 E-value=0.08 Score=56.80 Aligned_cols=95 Identities=18% Similarity=0.239 Sum_probs=51.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC-ChHHHHHHHHHHhCCccccchhhhhccccccC-CC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP-DIGKIQGELADQLGMKFSQGEIADQRGMKFSQ-ES 92 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~~ 92 (864)
+...++|.|..|+|||||++.+..... .+..+++-+.+.. ...+.+.+.......... -..... ++
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rT--------Vlv~atsd~ 223 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRT--------IIIASPAHE 223 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccce--------EEEEECCCC
Confidence 446899999999999999999987543 2444444444432 333444333322211110 000000 11
Q ss_pred Ch------hhHHHHHHHHHh-cCCeEEEEEcCCCch
Q 002939 93 DV------PGRARKLYARLQ-KENKILVILDNIWED 121 (864)
Q Consensus 93 ~~------~~~~~~~~~~l~-~~~~~LlvlDdv~~~ 121 (864)
.. ....-.+.++++ +++++|+++||+...
T Consensus 224 ~~~~r~~a~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 224 TAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 11 112234455554 589999999999654
No 433
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.67 E-value=0.025 Score=51.17 Aligned_cols=20 Identities=45% Similarity=0.675 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 002939 18 IIGMYGMGGVGKTTLVKEVA 37 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~ 37 (864)
.|.|+|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999988
No 434
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.67 E-value=0.031 Score=59.02 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=25.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
..+-+.|||..|.|||.|+-.+|+...++
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~ 89 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIK 89 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcc
Confidence 46899999999999999999999987663
No 435
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.66 E-value=0.066 Score=57.72 Aligned_cols=95 Identities=19% Similarity=0.265 Sum_probs=51.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEcc-CCCChHHHHHHHHHHhCCccccchhhhhccccccC-CC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVS-ETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQ-ES 92 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~~ 92 (864)
+...++|.|..|+|||||++.++..... +..+++-+. +...+.++.+.+...-+.... -..... ++
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rt--------vvv~~tsd~ 229 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIALIGERGREVREFIELILGEDGMARS--------VVVCATSDR 229 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccChHHHHHHHHHHhhcCCcceE--------EEEEECCCC
Confidence 4579999999999999999999875442 233333333 333454444444332111100 000000 11
Q ss_pred C------hhhHHHHHHHHHh-cCCeEEEEEcCCCch
Q 002939 93 D------VPGRARKLYARLQ-KENKILVILDNIWED 121 (864)
Q Consensus 93 ~------~~~~~~~~~~~l~-~~~~~LlvlDdv~~~ 121 (864)
. .......+.++++ +++++|+++||+...
T Consensus 230 p~~~r~~a~~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 230 SSIERAKAAYVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1 1122233445554 589999999998654
No 436
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.66 E-value=0.15 Score=47.51 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=32.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHH
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELAD 69 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~ 69 (864)
++.|.|.+|.|||++|.++.... ...++|+.-.+.++.+ +.+.|.+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~e-m~~rI~~ 46 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDDE-MAERIAR 46 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCHH-HHHHHHH
Confidence 36799999999999999998651 2357788766666543 4444444
No 437
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.66 E-value=0.19 Score=49.55 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
..+++|+||.|.|||||.+.+..-
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 379999999999999999999873
No 438
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.66 E-value=0.18 Score=56.20 Aligned_cols=55 Identities=20% Similarity=0.141 Sum_probs=38.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGM 73 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 73 (864)
+-+++.|.|++|+||||+|.++...-..+ .=..++||+..+ +..++.+. ++.++-
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~-~ge~~lyvs~eE--~~~~l~~~-~~~~G~ 74 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH-FDEPGVFVTFEE--SPQDIIKN-ARSFGW 74 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEec--CHHHHHHH-HHHcCC
Confidence 45899999999999999999987664322 014688988753 45555444 445544
No 439
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.13 Score=49.07 Aligned_cols=30 Identities=33% Similarity=0.396 Sum_probs=26.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
+..+-|.++|++|+|||.||++++++-...
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a~ 216 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAA 216 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccchh
Confidence 456889999999999999999999986643
No 440
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.65 E-value=0.16 Score=50.31 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEcc
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVS 55 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~ 55 (864)
+|+|.|.+|+||||+|+++.+.....+ ..+..++..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g--~~v~vI~~D 36 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREG--IHPAVVEGD 36 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC--CceEEEecc
Confidence 589999999999999999998775432 224455543
No 441
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.069 Score=61.03 Aligned_cols=109 Identities=18% Similarity=0.205 Sum_probs=61.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
...++.+.||.|+|||-||++++...-.. =+..+-+++|+-... ..+.+-+|.+.. +.+.+..
T Consensus 520 PigsFlF~GPTGVGKTELAkaLA~~Lfg~--e~aliR~DMSEy~Ek----HsVSrLIGaPPG-----------YVGyeeG 582 (786)
T COG0542 520 PIGSFLFLGPTGVGKTELAKALAEALFGD--EQALIRIDMSEYMEK----HSVSRLIGAPPG-----------YVGYEEG 582 (786)
T ss_pred CceEEEeeCCCcccHHHHHHHHHHHhcCC--CccceeechHHHHHH----HHHHHHhCCCCC-----------Cceeccc
Confidence 34688889999999999999999886432 144566666653221 233334443321 1111122
Q ss_pred hhHHHHHHHHHhcCCeE-EEEEcCCCch--hccccccCCCCCCC-----------CCcEEEEEeC
Q 002939 95 PGRARKLYARLQKENKI-LVILDNIWED--LDLEKVGVPSGNDW-----------RGCKVLLTAR 145 (864)
Q Consensus 95 ~~~~~~~~~~l~~~~~~-LlvlDdv~~~--~~~~~l~~~~~~~~-----------~gs~IivTtR 145 (864)
.. +-+..+ .+.| +|.||+|... +-.+.|...+.++. ..+-||.||-
T Consensus 583 G~----LTEaVR-r~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN 642 (786)
T COG0542 583 GQ----LTEAVR-RKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSN 642 (786)
T ss_pred cc----hhHhhh-cCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecc
Confidence 22 233343 4555 9999999754 33455544444421 2356667775
No 442
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.64 E-value=0.03 Score=53.04 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 6899999999999999999988753
No 443
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.63 E-value=0.028 Score=53.49 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
++++|.|++|+||||+++.++....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 444
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.63 E-value=0.037 Score=51.33 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=25.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
..++++|+|+.|+|||||++.+......+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 46799999999999999999999887654
No 445
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.60 E-value=0.053 Score=54.34 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=23.2
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 5 KNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 5 ~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
+.+..++.... +..|+|++|.||||++..+....
T Consensus 8 ~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 8 EAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 33444444333 79999999999998888877776
No 446
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.57 E-value=0.072 Score=51.68 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
...+++|.|..|.|||||++.++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999876
No 447
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=94.55 E-value=0.12 Score=56.24 Aligned_cols=99 Identities=19% Similarity=0.164 Sum_probs=58.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcc--CCCeEEEEEccCCC-ChHHHHHHHHHHhCCccccchhhhhccccccC-
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDM--LFDEVVFAEVSETP-DIGKIQGELADQLGMKFSQGEIADQRGMKFSQ- 90 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~--~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~- 90 (864)
+-+.++|.|.+|+|||||+.++++.....+ .--.++++-+.+.. .+.++...+...=.... .-.....
T Consensus 142 ~GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~r--------tvvV~ats 213 (460)
T PRK04196 142 RGQKLPIFSGSGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALER--------SVVFLNLA 213 (460)
T ss_pred CCCEEEeeCCCCCCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcce--------EEEEEEcC
Confidence 346899999999999999999998865321 01157788887654 35555555544311110 0000000
Q ss_pred CCC------hhhHHHHHHHHHh--cCCeEEEEEcCCCch
Q 002939 91 ESD------VPGRARKLYARLQ--KENKILVILDNIWED 121 (864)
Q Consensus 91 ~~~------~~~~~~~~~~~l~--~~~~~LlvlDdv~~~ 121 (864)
.++ .......+.++.+ +++++|+++||+...
T Consensus 214 d~p~~~R~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 252 (460)
T PRK04196 214 DDPAIERILTPRMALTAAEYLAFEKGMHVLVILTDMTNY 252 (460)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEcChHHH
Confidence 111 1122345566665 589999999998654
No 448
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.55 E-value=0.07 Score=53.83 Aligned_cols=39 Identities=23% Similarity=0.310 Sum_probs=32.3
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 5 KNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 5 ~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
++..+++.+.++.+|.|.|.+|.|||||+..+.+.....
T Consensus 93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~ 131 (290)
T PRK10463 93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS 131 (290)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 345556666788999999999999999999999987644
No 449
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.54 E-value=0.28 Score=49.37 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=37.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHH
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQ 70 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~ 70 (864)
..++.|.|.+|+|||+++.+++.+..... -..++|++... +..++...+...
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeCCC--CHHHHHHHHHHH
Confidence 36999999999999999999888765431 23477776655 455565655433
No 450
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.54 E-value=0.1 Score=52.76 Aligned_cols=25 Identities=40% Similarity=0.698 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
.|.+.|.+|+||||+|+.+......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999988764
No 451
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.53 E-value=0.038 Score=53.96 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=28.8
Q ss_pred HHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 9 NALLDPDISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 9 ~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
+.+.+.++++|+++|..|+|||||..++.+...
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455667899999999999999999999988754
No 452
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.53 E-value=0.026 Score=54.79 Aligned_cols=23 Identities=43% Similarity=0.703 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
+|+|.|++|+||||+|+.+..-.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 453
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.50 E-value=0.029 Score=53.11 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999885
No 454
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.50 E-value=0.079 Score=56.74 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 4 LKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 4 ~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
.+.+++.+.+.....+.|.|+||+|||+|.+.+.+..+..
T Consensus 10 ~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~ 49 (364)
T PF05970_consen 10 FDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR 49 (364)
T ss_pred HHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc
Confidence 4556666666667899999999999999999999987654
No 455
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.49 E-value=0.047 Score=51.71 Aligned_cols=25 Identities=32% Similarity=0.655 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
+|+|.|.+|+||||+|+.+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988764
No 456
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.48 E-value=0.028 Score=51.67 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998873
No 457
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=94.48 E-value=0.11 Score=56.56 Aligned_cols=95 Identities=11% Similarity=0.213 Sum_probs=55.1
Q ss_pred CccEEEEEcCCCCcHHHHH-HHHHHHhhhccCCCe-EEEEEccCCC-ChHHHHHHHHHHhCCccccchhhhhccccccC-
Q 002939 15 DISIIGMYGMGGVGKTTLV-KEVARRAKKDMLFDE-VVFAEVSETP-DIGKIQGELADQLGMKFSQGEIADQRGMKFSQ- 90 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa-~~~~~~~~~~~~f~~-~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~- 90 (864)
+-+.++|.|.+|+|||||| .++.+... -+. ++|+-+.+.. .+.++...+...=..... -+....
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~q~~----~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~t--------vvV~ats 228 (497)
T TIGR03324 161 RGQRELILGDRQTGKTAIAIDTILNQKG----RNVLCIYCAIGQRASAVAKVVANLREHGAMDYT--------IVVVTEG 228 (497)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHHhcC----CCcEEEEEEeccCcHHHHHHHHHhhhcCCccee--------EEEEeCC
Confidence 3468999999999999996 57777532 354 7888887764 355555555443111110 000000
Q ss_pred CCCh-h-----hHHHHHHHHHh-cCCeEEEEEcCCCch
Q 002939 91 ESDV-P-----GRARKLYARLQ-KENKILVILDNIWED 121 (864)
Q Consensus 91 ~~~~-~-----~~~~~~~~~l~-~~~~~LlvlDdv~~~ 121 (864)
.+.. . ...-.+.++++ +++++|+|+||+...
T Consensus 229 d~p~~~r~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~ 266 (497)
T TIGR03324 229 NDPPGLQYIAPYAATSIGEHFMEQGRDVLIVYDDLTQH 266 (497)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcChhHH
Confidence 1111 1 11223444443 589999999998654
No 458
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=94.48 E-value=0.21 Score=49.97 Aligned_cols=101 Identities=22% Similarity=0.285 Sum_probs=55.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh-hhccCC-------CeEEEEEccCC-CChHHHHHHHHHHhCCccccchhhhh---cc
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRA-KKDMLF-------DEVVFAEVSET-PDIGKIQGELADQLGMKFSQGEIADQ---RG 85 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~-~~~~~f-------~~~~~v~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~---~~ 85 (864)
++.|+|.+|+||||++...+=.. ..++.| ..++||++-.. .++-.=++.+..+++.+...-...+. .|
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~G 170 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVSG 170 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheecccccc
Confidence 55667999999999997766442 223334 35788887543 35555567777888776543222222 12
Q ss_pred ccccCCCChhhHHHHHHHHHhcCCeEEEEEcCC
Q 002939 86 MKFSQESDVPGRARKLYARLQKENKILVILDNI 118 (864)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv 118 (864)
.....+.-......+....+.+-+.=++|+|-.
T Consensus 171 aa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~ 203 (402)
T COG3598 171 AADESDVLSPKLYRRFEKILEQKRPDFVVIDPF 203 (402)
T ss_pred CCCccccccHHHHHHHHHHHHHhCCCeEEEcch
Confidence 111111111123334444444334558999964
No 459
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.45 E-value=0.048 Score=52.82 Aligned_cols=36 Identities=28% Similarity=0.330 Sum_probs=28.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEE
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVV 50 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~ 50 (864)
+...|.++||+|.||||..++++.....+..-.+++
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYvi 53 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVI 53 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEE
Confidence 456888999999999999999998877654333343
No 460
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.45 E-value=0.078 Score=54.71 Aligned_cols=46 Identities=26% Similarity=0.449 Sum_probs=34.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHH
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKI 63 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 63 (864)
.+++.+.|.||+||||+|.+.+-.....+ ..+.-|......++.++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~ 47 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDV 47 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhh
Confidence 47899999999999999999888777653 44666666655555444
No 461
>COG3910 Predicted ATPase [General function prediction only]
Probab=94.44 E-value=0.34 Score=44.59 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
+.++-.|+|..|+|||||...++-.
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~~ 60 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAAG 60 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHhh
Confidence 5679999999999999999998864
No 462
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.41 E-value=0.057 Score=57.94 Aligned_cols=27 Identities=33% Similarity=0.561 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
+...++|.|..|+|||||++.++....
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~ 165 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD 165 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC
Confidence 346899999999999999998887643
No 463
>PRK06217 hypothetical protein; Validated
Probab=94.40 E-value=0.036 Score=52.87 Aligned_cols=25 Identities=36% Similarity=0.427 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
..|.|.|.+|.||||+|+++.....
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3599999999999999999998864
No 464
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.40 E-value=0.076 Score=54.98 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=31.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCCh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDI 60 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~ 60 (864)
.+++.+.|-||+||||+|.+.+-....++ ..+.-++.....++
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L 43 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSL 43 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccH
Confidence 37899999999999999999888876553 34666655544433
No 465
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.37 E-value=0.092 Score=56.90 Aligned_cols=28 Identities=32% Similarity=0.529 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.+..+++|.|..|+|||||++.+.....
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~~ 183 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNTS 183 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 3457999999999999999998887654
No 466
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.35 E-value=0.12 Score=52.29 Aligned_cols=65 Identities=23% Similarity=0.263 Sum_probs=44.1
Q ss_pred HHHHhcCCC--ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-----hHHHHHHHHHHhCCc
Q 002939 7 VQNALLDPD--ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPD-----IGKIQGELADQLGMK 74 (864)
Q Consensus 7 i~~~l~~~~--~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~-----~~~~~~~i~~~l~~~ 74 (864)
|++++...+ .+.|.++|++|.|||+||-.+.+..-..-+|.. +..++-++ .+.+.+++-+++|..
T Consensus 54 Iv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~---isgsEiYS~E~kKTE~L~qa~RraIGvr 125 (450)
T COG1224 54 IVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA---ISGSEIYSLEVKKTEALTQALRRAIGVR 125 (450)
T ss_pred HHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCcee---eccceeeeecccHHHHHHHHHHHhhceE
Confidence 556666543 479999999999999999999999877656633 23333332 344555555555543
No 467
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=94.34 E-value=0.11 Score=56.30 Aligned_cols=51 Identities=14% Similarity=0.226 Sum_probs=33.9
Q ss_pred CccEEEEEcCCCCcHHHHHH-HHHHHhhhccCCCe-EEEEEccCCC-ChHHHHHHHHH
Q 002939 15 DISIIGMYGMGGVGKTTLVK-EVARRAKKDMLFDE-VVFAEVSETP-DIGKIQGELAD 69 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~-~~~~~~~~~~~f~~-~~~v~~~~~~-~~~~~~~~i~~ 69 (864)
+-+.++|.|.+|+||||||. .+.+. .. -|. ++|+-+.+.. .+.++...+..
T Consensus 140 rGQR~~I~g~~g~GKt~Lal~~I~~q-~~---~dv~cV~~~IGer~rev~e~~~~l~~ 193 (485)
T CHL00059 140 RGQRELIIGDRQTGKTAVATDTILNQ-KG---QNVICVYVAIGQKASSVAQVVTTLQE 193 (485)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHhc-cc---CCeEEEEEEecCCchHHHHHHHHhhc
Confidence 34689999999999999964 45544 22 344 4888887654 45555555443
No 468
>PRK13949 shikimate kinase; Provisional
Probab=94.34 E-value=0.04 Score=51.61 Aligned_cols=25 Identities=44% Similarity=0.461 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
+.|.|+|+.|+||||+++.++....
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999999875
No 469
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.34 E-value=0.18 Score=49.25 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
+-.+++|.|+.|.|||||++.++.-.
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34699999999999999999998653
No 470
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.31 E-value=0.089 Score=50.69 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=28.3
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 7 VQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 7 i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
.+..+...+-+++.|.|++|+||||+++.+.......
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 3333433344799999999999999999998877765
No 471
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.27 E-value=0.041 Score=52.33 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
+.++|+|.|++|+|||||++++....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46799999999999999999998864
No 472
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.26 E-value=0.07 Score=51.65 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=25.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
.+..+|+|+|++|+||||+|+.+......
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45679999999999999999999987653
No 473
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.25 E-value=0.32 Score=48.23 Aligned_cols=48 Identities=23% Similarity=0.303 Sum_probs=35.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHH
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGE 66 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~ 66 (864)
..+++.|.|.+|+|||++|.+++.....+ -..++|++..+ .+.++.+.
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~--~~~~l~~~ 62 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEE--REERILGY 62 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC--CHHHHHHH
Confidence 35799999999999999999988775433 34688888766 34444443
No 474
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.24 E-value=0.041 Score=51.69 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.|.|.|++|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999944
No 475
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.24 E-value=0.1 Score=49.00 Aligned_cols=124 Identities=19% Similarity=0.153 Sum_probs=65.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC--CChHHHHHHHHHHhC-CccccchhhhhccccccCC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET--PDIGKIQGELADQLG-MKFSQGEIADQRGMKFSQE 91 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~--~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~~~~~ 91 (864)
....|.|+|..|-||||.|...+-+....+ +.+.+.--+... ...... ++.+. ..... . ..+......
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G-~~V~ivQFlKg~~~~GE~~~----l~~l~~v~~~~--~--g~~~~~~~~ 91 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHG-KKVGVVQFIKGAWSTGERNL----LEFGGGVEFHV--M--GTGFTWETQ 91 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCC-CeEEEEEEecCCCccCHHHH----HhcCCCcEEEE--C--CCCCcccCC
Confidence 346899999999999999999998877653 233222222222 222222 22221 11110 0 000000001
Q ss_pred CC------hhhHHHHHHHHHhcCCeEEEEEcCCCch-----hccccccCCCCCCCCCcEEEEEeCCh
Q 002939 92 SD------VPGRARKLYARLQKENKILVILDNIWED-----LDLEKVGVPSGNDWRGCKVLLTARDR 147 (864)
Q Consensus 92 ~~------~~~~~~~~~~~l~~~~~~LlvlDdv~~~-----~~~~~l~~~~~~~~~gs~IivTtR~~ 147 (864)
+. .....+...+.+..++-=+||||.+-.. .+.+.+...+.....+.-||+|-|+.
T Consensus 92 ~~~e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 92 DRERDIAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11 1222344455555445569999998433 33444444444445567999999975
No 476
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=94.23 E-value=0.085 Score=54.24 Aligned_cols=45 Identities=20% Similarity=0.266 Sum_probs=35.8
Q ss_pred HHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEcc
Q 002939 8 QNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVS 55 (864)
Q Consensus 8 ~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~ 55 (864)
.+++..+....+.|-|++|.||||+|-.+.+....+ ..+.|+.-+
T Consensus 2 ~~FF~~~~G~TLLIKG~PGTGKTtfaLelL~~l~~~---~~v~YISTR 46 (484)
T PF07088_consen 2 KRFFTQEPGQTLLIKGEPGTGKTTFALELLNSLKDH---GNVMYISTR 46 (484)
T ss_pred chhhcCCCCcEEEEecCCCCCceeeehhhHHHHhcc---CCeEEEEec
Confidence 456777777899999999999999999999998765 235666544
No 477
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.15 Score=52.21 Aligned_cols=28 Identities=36% Similarity=0.335 Sum_probs=24.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
..+-|.++|++|.|||-||++|+.+-..
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 4578999999999999999999998664
No 478
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.21 E-value=0.054 Score=63.50 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
+.++++|+|+.|.||||+.+.+.-.
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 3479999999999999999999876
No 479
>PRK05439 pantothenate kinase; Provisional
Probab=94.20 E-value=0.17 Score=52.01 Aligned_cols=44 Identities=20% Similarity=0.121 Sum_probs=29.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET 57 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~ 57 (864)
...-+|+|.|.+|+||||+|+.+.........-..+.-++...-
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 34569999999999999999999886543211123445555443
No 480
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.19 Score=49.27 Aligned_cols=42 Identities=26% Similarity=0.364 Sum_probs=32.3
Q ss_pred chHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 2 STLKNVQNALLD-------------PDISIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 2 ~~~~~i~~~l~~-------------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
+.+++|.+...- ...+-|.++|.+|.|||-||++|+|.-...
T Consensus 192 ~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT 246 (440)
T KOG0726|consen 192 SQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT 246 (440)
T ss_pred HHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh
Confidence 456677666641 235688899999999999999999987654
No 481
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.18 E-value=0.036 Score=52.85 Aligned_cols=24 Identities=42% Similarity=0.585 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
++|+|+|+.|+||||+|+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 589999999999999999999854
No 482
>PRK15453 phosphoribulokinase; Provisional
Probab=94.17 E-value=0.14 Score=51.27 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.+..+|+|.|.+|+||||+|+.+.+...
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999999997654
No 483
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.17 E-value=0.09 Score=56.50 Aligned_cols=27 Identities=41% Similarity=0.631 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
+...++|.|..|+|||||++.++....
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~~~ 162 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARNAK 162 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 447999999999999999998887543
No 484
>PRK13947 shikimate kinase; Provisional
Probab=94.16 E-value=0.043 Score=51.77 Aligned_cols=24 Identities=42% Similarity=0.452 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.|.|+|++|+||||+|+.+++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998864
No 485
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.15 E-value=0.038 Score=50.56 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
+|.|.|++|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 486
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.12 E-value=0.056 Score=48.50 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAE 53 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~ 53 (864)
--++++|++|+||||+.+.+|.++... .+.+||.
T Consensus 38 ECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~ 71 (235)
T COG4778 38 ECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVR 71 (235)
T ss_pred cEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEE
Confidence 478999999999999999999998764 4466654
No 487
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.10 E-value=0.082 Score=56.80 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=51.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC-CChHHHHHHHHHHhCCccccchhhhhccc-cccCCC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET-PDIGKIQGELADQLGMKFSQGEIADQRGM-KFSQES 92 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~~~ 92 (864)
+...++|.|..|+|||||++.++.... .+..++.-+.+. ..+.+...+... .... ..-..+ ...+..
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~---~~~~----~rtv~vv~tsd~p 222 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLS---EETR----KRCVIVVATSDRP 222 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhc---cCCc----ceEEEEEECCCCC
Confidence 446999999999999999998886543 445555555443 333344343321 1100 000000 000011
Q ss_pred Chh-----hHHHHHHHHHh-cCCeEEEEEcCCCch
Q 002939 93 DVP-----GRARKLYARLQ-KENKILVILDNIWED 121 (864)
Q Consensus 93 ~~~-----~~~~~~~~~l~-~~~~~LlvlDdv~~~ 121 (864)
... ...-.+.++++ +++++|+++||+...
T Consensus 223 ~~~r~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 223 ALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY 257 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCHHHH
Confidence 111 11233455554 489999999999654
No 488
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.10 E-value=0.11 Score=56.08 Aligned_cols=95 Identities=18% Similarity=0.288 Sum_probs=51.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC-ChHHHHHHHHHHhCCccccchhhhhccccccCC-C
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP-DIGKIQGELADQLGMKFSQGEIADQRGMKFSQE-S 92 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~ 92 (864)
+...++|.|..|+|||||++.+..... .+.+++..+.... ...++...+...-+..... ...... +
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsv--------vv~atsd~ 234 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSV--------VVASPADD 234 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEE--------EEEECCCC
Confidence 446899999999999999998876432 3444444444332 3444444443332211110 000001 1
Q ss_pred C-h-----hhHHHHHHHHHh-cCCeEEEEEcCCCch
Q 002939 93 D-V-----PGRARKLYARLQ-KENKILVILDNIWED 121 (864)
Q Consensus 93 ~-~-----~~~~~~~~~~l~-~~~~~LlvlDdv~~~ 121 (864)
. . ......+.++++ +++++|+++||+...
T Consensus 235 ~p~~r~~a~~~a~aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 235 APLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEecchhHH
Confidence 1 1 111223444443 589999999998654
No 489
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.08 E-value=0.05 Score=48.73 Aligned_cols=49 Identities=27% Similarity=0.380 Sum_probs=34.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccc
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFS 76 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~ 76 (864)
..+++|+|.+|+||||+.+.+-... +. +..+ +.-++..+++...|....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~--~~iv---------NyG~~Mle~A~k~glve~ 52 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-VK--HKIV---------NYGDLMLEIAKKKGLVEH 52 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-hh--ceee---------eHhHHHHHHHHHhCCccc
Confidence 5799999999999999998887776 21 1112 234566677777665544
No 490
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.07 E-value=0.049 Score=52.20 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
..+|.|.|.+|+||||+|+.++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999884
No 491
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.05 E-value=0.14 Score=50.30 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
+.+++.|+|+.|.||||+.+.+..-
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH
Confidence 4579999999999999999998854
No 492
>PRK14530 adenylate kinase; Provisional
Probab=94.04 E-value=0.048 Score=53.66 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
+.|.|.|++|+||||+|+.++....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988763
No 493
>PRK14529 adenylate kinase; Provisional
Probab=94.03 E-value=0.18 Score=49.15 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 19 IGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 19 i~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
|.|.|++|+||||+|+.++.....
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~ 26 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDL 26 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 788999999999999999988753
No 494
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.02 E-value=0.12 Score=50.27 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
.+++|+|+.|.||||+.+.+....
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHH
Confidence 699999999999999999998543
No 495
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.00 E-value=0.044 Score=52.65 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
...+++|+|++|+|||||++.++--.+
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 446999999999999999999986543
No 496
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=94.00 E-value=0.1 Score=56.06 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
+...++|.|..|+|||||++.+....
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhccc
Confidence 45789999999999999999988754
No 497
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=93.98 E-value=0.18 Score=53.01 Aligned_cols=39 Identities=10% Similarity=0.110 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET 57 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~ 57 (864)
.-|.|+|..|+||+++|+.++..-... -...+.|+|...
T Consensus 30 ~pVlI~GE~GtGK~~lA~~iH~~s~r~--~~pfv~v~c~~~ 68 (326)
T PRK11608 30 KPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAAL 68 (326)
T ss_pred CCEEEECCCCCcHHHHHHHHHHhCCcc--CCCeEEEeCCCC
Confidence 578899999999999999998643211 123566777764
No 498
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.96 E-value=0.056 Score=50.84 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.+.|+|+|+.|+||||+|+.++....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 35799999999999999999998753
No 499
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.95 E-value=0.37 Score=54.43 Aligned_cols=102 Identities=19% Similarity=0.132 Sum_probs=57.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhc----------
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQR---------- 84 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~---------- 84 (864)
..+++.|.|.+|+|||++|.++......+ +-..++|++..+ +.+++.+.+. .++.+...-...+..
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~-~ge~~lyis~ee--~~~~i~~~~~-~~g~d~~~~~~~g~l~~~~~~~~~~ 105 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGIKR-FDEPGVFVTFEE--SPEDIIRNVA-SFGWDLQKLIDEGKLFILDASPDPS 105 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCEEEEEccC--CHHHHHHHHH-HcCCCHHHHhhCCeEEEEecCcccc
Confidence 45799999999999999999987765433 124688987766 4555555543 344332210000000
Q ss_pred cccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCc
Q 002939 85 GMKFSQESDVPGRARKLYARLQKENKILVILDNIWE 120 (864)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~ 120 (864)
+.......+.......+.+...+.+.-.+|+|.+..
T Consensus 106 ~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~ 141 (509)
T PRK09302 106 EQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEA 141 (509)
T ss_pred cccccccccHHHHHHHHHHHHHhhCCCEEEECCHHH
Confidence 000001122344455555555444555699998753
No 500
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.91 E-value=0.053 Score=52.97 Aligned_cols=27 Identities=37% Similarity=0.470 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
...+|+|+|++|+||||||+.++....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 347999999999999999999998753
Done!