Query 002939
Match_columns 864
No_of_seqs 426 out of 4595
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 07:18:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vq2_A TLR4, TOLL-like recepto 100.0 6.3E-36 2.2E-40 346.9 27.4 476 313-833 29-561 (606)
2 3t6q_A CD180 antigen; protein- 100.0 1.8E-34 6E-39 334.8 31.2 482 312-834 29-564 (606)
3 3rgz_A Protein brassinosteroid 100.0 7.8E-35 2.7E-39 344.9 26.6 454 315-827 177-713 (768)
4 3rgz_A Protein brassinosteroid 100.0 2.6E-34 8.7E-39 340.5 24.3 449 316-826 77-546 (768)
5 3t6q_A CD180 antigen; protein- 100.0 8.9E-34 3.1E-38 328.8 26.3 188 318-509 14-213 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-33 5.4E-38 326.8 28.1 470 318-829 13-532 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-32 5.2E-37 322.9 35.1 490 314-826 23-592 (680)
8 2z63_A TOLL-like receptor 4, v 100.0 1E-32 3.5E-37 317.8 29.7 449 313-828 25-528 (570)
9 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-32 5.6E-37 314.3 30.1 471 316-845 26-525 (549)
10 1ziw_A TOLL-like receptor 3; i 100.0 5.7E-32 2E-36 318.0 30.6 480 319-826 7-568 (680)
11 3j0a_A TOLL-like receptor 5; m 100.0 4E-32 1.4E-36 325.1 27.5 479 314-833 22-563 (844)
12 2a5y_B CED-4; apoptosis; HET: 100.0 4.9E-33 1.7E-37 314.3 17.7 278 2-295 135-472 (549)
13 2z7x_B TOLL-like receptor 1, v 100.0 4.8E-31 1.7E-35 299.6 32.0 457 319-845 3-496 (520)
14 3j0a_A TOLL-like receptor 5; m 100.0 3E-31 1E-35 317.5 27.8 464 319-827 7-535 (844)
15 2z63_A TOLL-like receptor 4, v 100.0 7.3E-31 2.5E-35 302.4 26.4 467 318-828 9-504 (570)
16 4ecn_A Leucine-rich repeat pro 100.0 6.7E-31 2.3E-35 307.7 24.5 394 316-785 323-843 (876)
17 4eco_A Uncharacterized protein 100.0 6.4E-31 2.2E-35 303.8 24.1 383 355-808 198-633 (636)
18 2z81_A CD282 antigen, TOLL-lik 100.0 8E-31 2.7E-35 300.3 22.4 436 313-811 47-514 (549)
19 4g8a_A TOLL-like receptor 4; l 100.0 3.4E-29 1.2E-33 292.8 29.7 490 312-843 48-592 (635)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.6E-29 2.6E-33 283.8 31.2 448 316-835 31-515 (562)
21 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-29 4.2E-34 288.1 21.3 427 341-828 3-454 (520)
22 4eco_A Uncharacterized protein 100.0 2.3E-29 7.9E-34 290.9 19.9 401 338-828 81-597 (636)
23 4ecn_A Leucine-rich repeat pro 100.0 5E-29 1.7E-33 291.8 19.1 297 398-745 436-785 (876)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5E-28 1.7E-32 276.9 19.0 433 336-828 29-483 (562)
25 4g8a_A TOLL-like receptor 4; l 100.0 7.1E-27 2.4E-31 273.2 28.9 474 319-828 34-552 (635)
26 1o6v_A Internalin A; bacterial 100.0 4.5E-27 1.5E-31 262.2 24.6 347 336-785 44-391 (466)
27 1o6v_A Internalin A; bacterial 99.9 7.9E-27 2.7E-31 260.2 24.9 343 313-748 43-387 (466)
28 1vt4_I APAF-1 related killer D 99.9 1.3E-27 4.5E-32 271.0 16.1 268 3-287 136-436 (1221)
29 3v47_A TOLL-like receptor 5B a 99.9 2.5E-26 8.5E-31 256.3 23.1 133 601-748 274-407 (455)
30 3v47_A TOLL-like receptor 5B a 99.9 9.3E-27 3.2E-31 259.8 18.7 364 314-721 28-406 (455)
31 3sfz_A APAF-1, apoptotic pepti 99.9 2.9E-26 9.9E-31 289.4 21.4 273 2-294 131-452 (1249)
32 3o6n_A APL1; leucine-rich repe 99.9 7.8E-26 2.7E-30 246.3 21.0 307 334-748 41-351 (390)
33 3bz5_A Internalin-J, INLJ; leu 99.9 3.3E-26 1.1E-30 252.5 17.9 140 336-488 40-181 (457)
34 1jl5_A Outer protein YOPM; leu 99.9 2.5E-26 8.7E-31 253.2 15.6 343 315-746 10-367 (454)
35 1jl5_A Outer protein YOPM; leu 99.9 4.1E-26 1.4E-30 251.6 16.6 161 333-507 6-182 (454)
36 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-25 4.7E-30 247.6 19.9 311 312-746 38-349 (457)
37 3oja_B Anopheles plasmodium-re 99.9 2.6E-25 8.9E-30 255.6 20.9 309 334-750 47-359 (597)
38 4fmz_A Internalin; leucine ric 99.9 6.4E-25 2.2E-29 235.2 22.1 150 312-469 40-189 (347)
39 4fmz_A Internalin; leucine ric 99.9 1.9E-24 6.6E-29 231.5 25.7 308 328-697 34-344 (347)
40 2id5_A Lingo-1, leucine rich r 99.9 5.5E-25 1.9E-29 246.7 20.3 308 319-720 14-330 (477)
41 1z6t_A APAF-1, apoptotic prote 99.9 3.4E-24 1.1E-28 246.6 23.4 270 2-292 131-450 (591)
42 3o6n_A APL1; leucine-rich repe 99.9 4.4E-24 1.5E-28 232.4 22.1 187 314-507 43-235 (390)
43 2id5_A Lingo-1, leucine rich r 99.9 1E-23 3.5E-28 236.4 20.4 155 313-470 29-189 (477)
44 3oja_B Anopheles plasmodium-re 99.9 2.3E-23 7.8E-28 239.4 22.1 210 314-534 49-264 (597)
45 3ogk_B Coronatine-insensitive 99.9 3.5E-24 1.2E-28 247.6 12.0 417 336-826 71-546 (592)
46 1xku_A Decorin; proteoglycan, 99.9 1.2E-21 4.1E-26 207.9 21.9 103 364-469 52-157 (330)
47 2ft3_A Biglycan; proteoglycan, 99.9 7.1E-22 2.4E-26 209.7 19.4 289 339-697 34-331 (332)
48 3ogk_B Coronatine-insensitive 99.9 8.2E-23 2.8E-27 236.1 11.9 423 314-804 71-548 (592)
49 2ft3_A Biglycan; proteoglycan, 99.9 8.1E-22 2.8E-26 209.3 16.9 101 364-470 33-136 (332)
50 1xku_A Decorin; proteoglycan, 99.9 9.5E-21 3.3E-25 200.9 23.7 148 316-469 31-183 (330)
51 2p1m_B Transport inhibitor res 99.9 1.8E-22 6E-27 233.5 8.3 417 315-803 65-540 (594)
52 1z7x_W Ribonuclease inhibitor; 99.9 5.8E-23 2E-27 229.6 2.1 213 603-827 200-436 (461)
53 1ogq_A PGIP-2, polygalacturona 99.8 5E-21 1.7E-25 200.7 15.2 245 339-669 51-304 (313)
54 2p1m_B Transport inhibitor res 99.8 1E-22 3.5E-27 235.5 2.5 424 354-826 56-539 (594)
55 4fcg_A Uncharacterized protein 99.8 1.8E-20 6E-25 197.7 18.0 89 362-450 79-168 (328)
56 3g06_A SSPH2 (leucine-rich rep 99.8 1E-19 3.6E-24 206.3 22.8 171 316-507 40-210 (622)
57 1z7x_W Ribonuclease inhibitor; 99.8 8.9E-22 3E-26 219.9 5.4 391 338-807 3-440 (461)
58 1ogq_A PGIP-2, polygalacturona 99.8 1.2E-20 4E-25 197.9 12.9 106 364-470 50-162 (313)
59 4fcg_A Uncharacterized protein 99.8 8.4E-20 2.9E-24 192.5 18.6 220 315-585 80-311 (328)
60 2z80_A TOLL-like receptor 2, v 99.8 1.8E-20 6.1E-25 200.8 13.5 150 318-470 33-187 (353)
61 3g06_A SSPH2 (leucine-rich rep 99.8 1.5E-19 5.2E-24 205.0 20.7 112 339-468 41-152 (622)
62 3zyj_A Leucine-rich repeat-con 99.8 7.1E-20 2.4E-24 202.3 16.4 150 318-470 45-198 (440)
63 3zyi_A Leucine-rich repeat-con 99.8 7.8E-20 2.7E-24 202.7 16.3 150 318-470 56-209 (452)
64 2z80_A TOLL-like receptor 2, v 99.8 2E-19 6.9E-24 192.6 18.8 65 574-641 173-237 (353)
65 2z66_A Variable lymphocyte rec 99.8 8.6E-20 2.9E-24 191.3 15.4 145 320-468 11-161 (306)
66 3o53_A Protein LRIM1, AGAP0063 99.8 6.7E-21 2.3E-25 200.4 3.6 275 356-725 26-301 (317)
67 3zyi_A Leucine-rich repeat-con 99.8 5.6E-19 1.9E-23 195.9 17.9 102 364-466 75-180 (452)
68 3zyj_A Leucine-rich repeat-con 99.8 7.2E-19 2.5E-23 194.3 17.8 110 354-467 57-170 (440)
69 3o53_A Protein LRIM1, AGAP0063 99.8 1.4E-19 4.7E-24 190.4 9.5 159 602-785 120-279 (317)
70 2z66_A Variable lymphocyte rec 99.8 1.9E-18 6.6E-23 181.0 15.0 103 364-467 28-136 (306)
71 1ozn_A Reticulon 4 receptor; N 99.8 3.7E-18 1.3E-22 176.7 16.9 147 319-469 14-165 (285)
72 3oja_A Leucine-rich immune mol 99.7 1.7E-18 5.7E-23 192.8 9.7 61 685-749 190-250 (487)
73 1ozn_A Reticulon 4 receptor; N 99.7 7.2E-18 2.5E-22 174.6 13.4 193 312-507 28-234 (285)
74 3oja_A Leucine-rich immune mol 99.7 1.2E-18 4.1E-23 194.0 6.3 214 364-667 34-248 (487)
75 2xwt_C Thyrotropin receptor; s 99.7 2.3E-17 8E-22 165.7 13.0 192 314-508 29-236 (239)
76 1wwl_A Monocyte differentiatio 99.7 8.3E-19 2.8E-23 183.9 1.2 124 339-469 44-185 (312)
77 1h6u_A Internalin H; cell adhe 99.7 9.1E-17 3.1E-21 167.7 15.2 190 312-535 37-228 (308)
78 2o6q_A Variable lymphocyte rec 99.7 2E-16 6.9E-21 162.0 16.5 170 317-490 17-194 (270)
79 1h6u_A Internalin H; cell adhe 99.7 7.9E-17 2.7E-21 168.1 13.6 123 336-467 39-161 (308)
80 2z62_A TOLL-like receptor 4, v 99.7 1.7E-16 5.8E-21 163.3 14.9 210 353-639 20-237 (276)
81 1wwl_A Monocyte differentiatio 99.7 1.9E-17 6.5E-22 173.5 7.0 213 317-535 64-307 (312)
82 1p9a_G Platelet glycoprotein I 99.7 2.2E-16 7.5E-21 162.9 14.8 171 315-490 9-185 (290)
83 1p9a_G Platelet glycoprotein I 99.7 1.8E-16 6.3E-21 163.5 14.1 124 338-467 10-134 (290)
84 2z62_A TOLL-like receptor 4, v 99.7 2.2E-16 7.5E-21 162.5 14.1 154 314-470 26-190 (276)
85 2o6q_A Variable lymphocyte rec 99.7 3.7E-16 1.3E-20 160.0 14.9 173 313-488 34-216 (270)
86 2xwt_C Thyrotropin receptor; s 99.7 3.6E-16 1.2E-20 157.0 13.5 207 596-830 26-238 (239)
87 3rfs_A Internalin B, repeat mo 99.7 5.6E-16 1.9E-20 158.8 14.9 154 312-470 37-194 (272)
88 3rfs_A Internalin B, repeat mo 99.7 5.1E-16 1.7E-20 159.1 13.8 179 307-491 54-236 (272)
89 1h6t_A Internalin B; cell adhe 99.7 6.9E-16 2.4E-20 159.4 14.3 169 312-489 42-212 (291)
90 3m19_A Variable lymphocyte rec 99.6 1.2E-15 3.9E-20 154.4 15.0 168 317-488 15-190 (251)
91 4ay9_X Follicle-stimulating ho 99.6 2.3E-15 7.9E-20 160.4 15.7 101 367-469 12-116 (350)
92 2ca6_A RAN GTPase-activating p 99.6 2.5E-16 8.7E-21 170.7 6.4 83 361-443 29-133 (386)
93 2ast_B S-phase kinase-associat 99.6 1.3E-16 4.6E-21 169.6 4.0 247 339-639 48-306 (336)
94 3m19_A Variable lymphocyte rec 99.6 3.9E-15 1.3E-19 150.5 13.9 156 313-471 32-193 (251)
95 2o6s_A Variable lymphocyte rec 99.6 5.1E-15 1.8E-19 144.9 14.4 168 319-493 10-181 (208)
96 1m9s_A Internalin B; cell inva 99.6 3.3E-15 1.1E-19 169.3 14.6 181 312-501 39-221 (605)
97 3e6j_A Variable lymphocyte rec 99.6 4.9E-15 1.7E-19 147.1 13.9 150 317-470 20-172 (229)
98 2ast_B S-phase kinase-associat 99.6 5.7E-16 2E-20 164.7 6.7 225 575-826 70-301 (336)
99 4ezg_A Putative uncharacterize 99.6 1.4E-14 4.6E-19 140.4 14.7 150 313-470 41-194 (197)
100 2v9t_B SLIT homolog 2 protein 99.6 9.6E-15 3.3E-19 143.9 12.8 148 319-470 14-165 (220)
101 4glp_A Monocyte differentiatio 99.6 4.2E-15 1.4E-19 155.6 9.5 170 361-535 114-305 (310)
102 3goz_A Leucine-rich repeat-con 99.6 4.2E-15 1.4E-19 159.3 9.2 246 357-666 15-294 (362)
103 2ca6_A RAN GTPase-activating p 99.6 9.2E-16 3.2E-20 166.3 4.0 107 363-470 8-135 (386)
104 2v70_A SLIT-2, SLIT homolog 2 99.6 1.7E-14 5.9E-19 142.1 12.7 148 319-470 14-166 (220)
105 1h6t_A Internalin B; cell adhe 99.6 4.4E-15 1.5E-19 153.4 8.4 185 317-535 25-211 (291)
106 1xeu_A Internalin C; cellular 99.5 3.3E-15 1.1E-19 151.7 6.8 144 315-468 40-183 (263)
107 4ay9_X Follicle-stimulating ho 99.5 4.2E-14 1.5E-18 150.6 14.1 215 313-533 27-255 (350)
108 4glp_A Monocyte differentiatio 99.5 2.5E-14 8.5E-19 149.7 11.9 191 315-508 90-304 (310)
109 4ezg_A Putative uncharacterize 99.5 3.4E-14 1.2E-18 137.5 10.5 127 336-469 42-171 (197)
110 3goz_A Leucine-rich repeat-con 99.5 7.6E-15 2.6E-19 157.2 6.0 100 369-469 3-121 (362)
111 1xeu_A Internalin C; cellular 99.5 1.1E-13 3.7E-18 140.5 14.0 175 314-498 17-193 (263)
112 1m9s_A Internalin B; cell inva 99.5 1.3E-14 4.6E-19 164.3 7.7 185 315-508 20-207 (605)
113 3cvr_A Invasion plasmid antige 99.5 6E-14 2.1E-18 157.0 12.6 92 365-468 60-151 (571)
114 2xot_A Amphoterin-induced prot 99.5 7.8E-14 2.7E-18 149.1 10.9 146 320-469 22-175 (361)
115 2xot_A Amphoterin-induced prot 99.5 1.3E-13 4.4E-18 147.5 11.9 155 313-470 36-202 (361)
116 3cvr_A Invasion plasmid antige 99.4 5.2E-13 1.8E-17 149.4 15.2 193 316-546 59-252 (571)
117 2o6s_A Variable lymphocyte rec 99.4 3E-13 1E-17 132.2 10.9 149 313-471 25-179 (208)
118 2ell_A Acidic leucine-rich nuc 99.4 5.1E-13 1.7E-17 125.6 10.8 125 315-443 23-158 (168)
119 2v9t_B SLIT homolog 2 protein 99.4 5.7E-13 1.9E-17 131.1 11.0 141 341-487 14-162 (220)
120 2ell_A Acidic leucine-rich nuc 99.4 5.4E-13 1.8E-17 125.4 10.2 129 338-469 24-159 (168)
121 2je0_A Acidic leucine-rich nuc 99.4 6.2E-13 2.1E-17 122.2 9.1 103 361-465 39-148 (149)
122 2v70_A SLIT-2, SLIT homolog 2 99.4 1E-12 3.6E-17 129.3 11.1 142 341-488 14-164 (220)
123 1a9n_A U2A', U2A'; complex (nu 99.4 6.1E-13 2.1E-17 126.0 7.7 130 335-469 16-152 (176)
124 2je0_A Acidic leucine-rich nuc 99.4 1.4E-12 4.8E-17 119.8 9.6 123 315-441 16-149 (149)
125 2qen_A Walker-type ATPase; unk 99.4 1E-11 3.6E-16 132.5 17.2 196 3-210 20-249 (350)
126 3e6j_A Variable lymphocyte rec 99.4 3.2E-12 1.1E-16 126.7 12.2 129 313-443 37-170 (229)
127 4b8c_D Glucose-repressible alc 99.3 5.6E-13 1.9E-17 155.2 7.2 187 316-507 173-368 (727)
128 2wfh_A SLIT homolog 2 protein 99.3 3.9E-12 1.3E-16 122.1 11.5 106 364-470 31-139 (193)
129 1a9n_A U2A', U2A'; complex (nu 99.3 1.8E-12 6.2E-17 122.7 8.4 109 360-470 15-126 (176)
130 2fna_A Conserved hypothetical 99.3 1.8E-11 6E-16 131.2 17.1 196 2-211 20-254 (357)
131 4b8c_D Glucose-repressible alc 99.3 6.6E-13 2.2E-17 154.6 5.9 157 325-487 210-369 (727)
132 1w8a_A SLIT protein; signaling 99.3 7.6E-12 2.6E-16 120.2 11.6 122 319-443 11-137 (192)
133 2wfh_A SLIT homolog 2 protein 99.3 1.9E-11 6.3E-16 117.3 12.0 121 319-443 13-137 (193)
134 1w8a_A SLIT protein; signaling 99.3 1.6E-11 5.6E-16 117.8 11.0 124 341-470 11-139 (192)
135 1ds9_A Outer arm dynein; leuci 99.2 5E-13 1.7E-17 129.4 -0.6 109 359-470 43-153 (198)
136 2o6r_A Variable lymphocyte rec 99.2 6.2E-11 2.1E-15 112.3 12.2 106 364-470 28-137 (177)
137 1ds9_A Outer arm dynein; leuci 99.2 5.7E-13 1.9E-17 129.0 -2.2 141 318-463 25-180 (198)
138 1dce_A Protein (RAB geranylger 99.2 3.8E-11 1.3E-15 135.2 11.6 104 365-471 442-547 (567)
139 1dce_A Protein (RAB geranylger 99.2 4.3E-11 1.5E-15 134.8 11.5 178 314-494 347-550 (567)
140 3sb4_A Hypothetical leucine ri 99.2 3.4E-11 1.2E-15 126.9 9.9 101 601-716 225-327 (329)
141 2o6r_A Variable lymphocyte rec 99.2 8.2E-11 2.8E-15 111.5 11.6 126 318-447 9-138 (177)
142 3sb4_A Hypothetical leucine ri 99.2 4.5E-11 1.5E-15 125.9 10.7 287 363-742 24-327 (329)
143 1w5s_A Origin recognition comp 99.2 1.8E-10 6.2E-15 125.9 15.6 194 2-207 29-266 (412)
144 2r9u_A Variable lymphocyte rec 99.1 9.5E-11 3.2E-15 110.2 9.1 101 367-470 15-118 (174)
145 3g39_A Variable lymphocyte rec 99.1 1.3E-10 4.3E-15 109.0 9.0 102 366-470 11-115 (170)
146 2qby_B CDC6 homolog 3, cell di 99.1 3.5E-09 1.2E-13 114.3 18.7 206 3-226 28-270 (384)
147 2v1u_A Cell division control p 99.0 3E-09 1E-13 115.1 16.2 187 3-201 27-243 (387)
148 2r9u_A Variable lymphocyte rec 99.0 9.3E-10 3.2E-14 103.3 10.3 84 364-448 33-120 (174)
149 2qby_A CDC6 homolog 1, cell di 99.0 1.4E-09 4.7E-14 117.7 12.4 189 3-203 28-241 (386)
150 1njg_A DNA polymerase III subu 99.0 1.8E-09 6.2E-14 108.7 12.2 191 3-210 31-231 (250)
151 4fdw_A Leucine rich hypothetic 99.0 1.6E-08 5.5E-13 108.6 19.7 119 338-465 113-234 (401)
152 2chg_A Replication factor C sm 99.0 3.1E-09 1.1E-13 105.1 13.2 175 3-207 25-204 (226)
153 3g39_A Variable lymphocyte rec 99.0 1.6E-09 5.4E-14 101.4 10.0 80 364-443 30-113 (170)
154 1fnn_A CDC6P, cell division co 98.9 2.7E-08 9.4E-13 107.5 17.6 189 3-204 25-244 (389)
155 4fs7_A Uncharacterized protein 98.8 7.7E-08 2.6E-12 103.9 16.8 106 354-465 61-170 (394)
156 1sxj_B Activator 1 37 kDa subu 98.8 2.1E-08 7.2E-13 105.3 11.2 177 2-207 28-210 (323)
157 4fs7_A Uncharacterized protein 98.8 2.4E-07 8.3E-12 99.9 19.2 325 328-741 59-393 (394)
158 4fdw_A Leucine rich hypothetic 98.7 9.9E-08 3.4E-12 102.4 15.2 204 317-534 136-355 (401)
159 2ifg_A High affinity nerve gro 98.7 1.7E-08 5.8E-13 107.2 8.5 99 369-470 13-116 (347)
160 3te6_A Regulatory protein SIR3 98.7 1.6E-07 5.6E-12 95.6 14.9 161 2-176 27-211 (318)
161 1iqp_A RFCS; clamp loader, ext 98.6 7.9E-08 2.7E-12 101.1 11.0 176 3-210 33-215 (327)
162 3un9_A NLR family member X1; l 98.6 4.3E-09 1.5E-13 111.9 -0.7 156 313-470 69-252 (372)
163 3un9_A NLR family member X1; l 98.6 1.1E-08 3.8E-13 108.7 1.5 151 337-488 71-250 (372)
164 3e4g_A ATP synthase subunit S, 98.5 4.1E-08 1.4E-12 90.0 4.0 40 769-809 115-154 (176)
165 2ifg_A High affinity nerve gro 98.5 1.6E-07 5.4E-12 99.6 8.4 88 354-443 23-114 (347)
166 2chq_A Replication factor C sm 98.5 7.8E-07 2.7E-11 93.0 13.5 172 3-206 25-203 (319)
167 3e4g_A ATP synthase subunit S, 98.5 1.1E-07 3.8E-12 87.1 5.3 89 687-784 62-155 (176)
168 1jr3_A DNA polymerase III subu 98.4 2.8E-06 9.7E-11 90.9 15.1 188 3-207 24-221 (373)
169 3bos_A Putative DNA replicatio 98.4 3.7E-07 1.3E-11 91.1 7.1 161 4-206 40-216 (242)
170 1d2n_A N-ethylmaleimide-sensit 98.4 7.9E-06 2.7E-10 82.9 16.9 177 13-229 61-264 (272)
171 3h4m_A Proteasome-activating n 98.4 3.2E-06 1.1E-10 86.6 13.5 155 14-204 49-228 (285)
172 2qz4_A Paraplegin; AAA+, SPG7, 98.3 8.1E-06 2.8E-10 82.4 15.4 157 16-206 39-221 (262)
173 1a5t_A Delta prime, HOLB; zinc 98.3 5E-06 1.7E-10 86.9 13.9 183 3-204 10-202 (334)
174 2ra8_A Uncharacterized protein 98.3 1.8E-06 6.3E-11 90.6 10.4 169 622-805 135-318 (362)
175 2z4s_A Chromosomal replication 98.3 3.9E-06 1.3E-10 91.0 12.8 169 6-204 119-303 (440)
176 1xwi_A SKD1 protein; VPS4B, AA 98.2 2.8E-05 9.5E-10 80.6 17.8 156 16-206 45-222 (322)
177 1sxj_D Activator 1 41 kDa subu 98.2 4.6E-06 1.6E-10 88.5 11.4 185 2-206 44-234 (353)
178 1hqc_A RUVB; extended AAA-ATPa 98.2 3.3E-06 1.1E-10 88.4 9.8 165 4-210 21-214 (324)
179 4gt6_A Cell surface protein; l 98.2 4.3E-05 1.5E-09 82.2 18.6 107 621-746 260-367 (394)
180 2ra8_A Uncharacterized protein 98.2 2.5E-06 8.6E-11 89.6 8.4 57 359-417 167-227 (362)
181 3eie_A Vacuolar protein sortin 98.2 2.6E-05 8.9E-10 81.0 15.9 155 16-206 51-227 (322)
182 1jbk_A CLPB protein; beta barr 98.2 9.8E-07 3.4E-11 84.5 4.5 142 2-172 29-194 (195)
183 3d8b_A Fidgetin-like protein 1 98.1 2.5E-05 8.7E-10 82.3 14.5 158 15-207 116-295 (357)
184 1io0_A Tropomodulin; LRR prote 98.1 1.2E-06 4.2E-11 82.8 3.9 112 358-470 30-164 (185)
185 1sxj_A Activator 1 95 kDa subu 98.1 7.8E-06 2.7E-10 90.9 10.7 179 3-207 47-253 (516)
186 2qp9_X Vacuolar protein sortin 98.1 5.3E-05 1.8E-09 79.7 16.3 154 17-206 85-260 (355)
187 3pvs_A Replication-associated 98.1 1.8E-05 6.3E-10 85.5 12.6 162 5-205 39-213 (447)
188 4b4t_J 26S protease regulatory 98.0 7.7E-05 2.6E-09 77.8 15.8 150 15-200 181-354 (405)
189 3u61_B DNA polymerase accessor 98.0 2E-05 6.9E-10 82.2 11.7 164 3-204 34-213 (324)
190 3vfd_A Spastin; ATPase, microt 98.0 6.4E-05 2.2E-09 80.5 15.3 156 16-206 148-325 (389)
191 1l8q_A Chromosomal replication 98.0 3E-05 1E-09 80.9 12.2 161 6-201 25-202 (324)
192 1sxj_C Activator 1 40 kDa subu 98.0 2.4E-05 8.1E-10 82.2 11.5 169 3-203 33-208 (340)
193 4gt6_A Cell surface protein; l 98.0 0.00011 3.6E-09 79.1 16.9 307 329-695 52-387 (394)
194 3syl_A Protein CBBX; photosynt 98.0 2.5E-05 8.5E-10 81.0 11.0 129 15-176 66-217 (309)
195 3b9p_A CG5977-PA, isoform A; A 98.0 0.00019 6.5E-09 73.7 17.5 155 16-206 54-232 (297)
196 2zan_A Vacuolar protein sortin 98.0 0.00014 4.7E-09 79.0 16.9 157 16-206 167-344 (444)
197 3rw6_A Nuclear RNA export fact 98.0 2.3E-06 7.9E-11 84.9 2.4 79 384-463 167-257 (267)
198 3cf0_A Transitional endoplasmi 98.0 5.5E-05 1.9E-09 77.7 12.9 152 15-202 48-223 (301)
199 4b4t_L 26S protease subunit RP 97.9 0.00013 4.5E-09 77.5 15.6 150 15-200 214-387 (437)
200 2gno_A DNA polymerase III, gam 97.9 3.8E-05 1.3E-09 78.4 10.7 143 2-176 4-152 (305)
201 1sxj_E Activator 1 40 kDa subu 97.9 1.9E-05 6.4E-10 83.7 8.7 99 108-207 133-237 (354)
202 3rw6_A Nuclear RNA export fact 97.9 1.4E-05 4.6E-10 79.4 6.0 79 361-439 167-258 (267)
203 3pfi_A Holliday junction ATP-d 97.9 0.00027 9.1E-09 74.2 16.4 160 4-206 38-226 (338)
204 4b4t_H 26S protease regulatory 97.9 0.00018 6E-09 76.2 14.6 150 14-199 241-414 (467)
205 4b4t_I 26S protease regulatory 97.8 0.00022 7.6E-09 74.6 14.9 149 15-199 215-387 (437)
206 4b4t_K 26S protease regulatory 97.8 0.00022 7.6E-09 75.6 14.7 149 15-199 205-378 (428)
207 1lv7_A FTSH; alpha/beta domain 97.8 0.00013 4.4E-09 73.1 11.9 153 16-204 45-222 (257)
208 4b4t_M 26S protease regulatory 97.8 0.00014 4.8E-09 77.2 12.0 149 15-199 214-386 (434)
209 3uk6_A RUVB-like 2; hexameric 97.7 0.00031 1.1E-08 74.7 14.9 192 6-204 58-300 (368)
210 1io0_A Tropomodulin; LRR prote 97.7 1.1E-05 3.9E-10 76.0 3.1 110 336-446 34-164 (185)
211 2ce7_A Cell division protein F 97.7 0.00023 7.8E-09 77.0 13.3 148 17-200 50-221 (476)
212 3ec2_A DNA replication protein 97.7 1.5E-05 5.2E-10 75.0 3.2 37 5-41 24-63 (180)
213 4h09_A Hypothetical leucine ri 97.7 0.0011 3.7E-08 70.8 17.7 120 336-465 44-166 (379)
214 4h09_A Hypothetical leucine ri 97.6 0.0012 4.2E-08 70.3 17.6 78 360-441 42-122 (379)
215 2p65_A Hypothetical protein PF 97.6 0.00015 5.3E-09 68.4 9.5 40 3-42 30-69 (187)
216 3pxg_A Negative regulator of g 97.6 0.00024 8.4E-09 77.6 11.3 139 2-176 187-338 (468)
217 2w58_A DNAI, primosome compone 97.5 0.00021 7.3E-09 68.5 8.8 50 4-55 38-91 (202)
218 1qvr_A CLPB protein; coiled co 97.5 0.00017 5.9E-09 85.5 9.6 146 2-176 177-345 (854)
219 3hu3_A Transitional endoplasmi 97.5 0.00077 2.6E-08 73.6 13.4 157 14-206 236-414 (489)
220 3t15_A Ribulose bisphosphate c 97.4 0.00032 1.1E-08 71.5 8.4 28 15-42 35-62 (293)
221 4fcw_A Chaperone protein CLPB; 97.4 0.00019 6.6E-09 74.2 6.8 41 17-59 48-88 (311)
222 2r62_A Cell division protease 97.4 9.6E-05 3.3E-09 74.6 4.0 149 17-201 45-219 (268)
223 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0013 4.6E-08 77.0 13.4 146 2-176 193-362 (758)
224 3cf2_A TER ATPase, transitiona 97.3 0.00045 1.6E-08 79.2 8.6 150 15-200 237-407 (806)
225 1ofh_A ATP-dependent HSL prote 97.2 0.0017 5.8E-08 67.0 11.9 36 16-56 50-85 (310)
226 3pxi_A Negative regulator of g 97.2 0.0011 3.9E-08 77.5 11.3 139 2-176 187-338 (758)
227 3n70_A Transport activator; si 97.1 0.00016 5.5E-09 64.9 2.0 37 4-40 10-48 (145)
228 2bjv_A PSP operon transcriptio 97.1 0.0005 1.7E-08 69.2 5.7 39 17-57 30-68 (265)
229 2x8a_A Nuclear valosin-contain 97.1 0.0036 1.2E-07 62.8 11.9 127 17-177 45-192 (274)
230 1ixz_A ATP-dependent metallopr 97.0 0.0041 1.4E-07 61.8 11.4 147 18-200 51-221 (254)
231 3pxi_A Negative regulator of g 96.9 0.0015 5.3E-08 76.4 8.9 123 18-176 523-675 (758)
232 2dhr_A FTSH; AAA+ protein, hex 96.9 0.0058 2E-07 66.4 12.6 145 17-200 65-236 (499)
233 3m6a_A ATP-dependent protease 96.9 0.0027 9.1E-08 70.7 9.9 27 15-41 107-133 (543)
234 3hr8_A Protein RECA; alpha and 96.9 0.0043 1.5E-07 64.1 10.7 90 16-120 61-150 (356)
235 3io5_A Recombination and repai 96.9 0.0043 1.5E-07 62.0 10.1 91 18-121 30-123 (333)
236 1iy2_A ATP-dependent metallopr 96.8 0.01 3.5E-07 59.8 12.7 147 18-200 75-245 (278)
237 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.0015 5E-08 65.7 5.9 71 17-121 124-194 (331)
238 1in4_A RUVB, holliday junction 96.7 0.0079 2.7E-07 62.5 11.3 48 156-204 173-220 (334)
239 1ojl_A Transcriptional regulat 96.6 0.0032 1.1E-07 64.3 7.6 52 4-57 11-64 (304)
240 2qgz_A Helicase loader, putati 96.6 0.0027 9.3E-08 64.9 6.7 49 5-55 138-190 (308)
241 1n0w_A DNA repair protein RAD5 96.6 0.014 4.7E-07 57.5 11.8 100 16-120 24-130 (243)
242 2cvh_A DNA repair and recombin 96.6 0.012 4.1E-07 56.9 11.1 52 15-72 19-70 (220)
243 2zr9_A Protein RECA, recombina 96.5 0.0094 3.2E-07 61.9 10.4 89 16-119 61-149 (349)
244 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0045 1.6E-07 60.6 7.7 47 16-66 23-69 (235)
245 1xp8_A RECA protein, recombina 96.5 0.011 3.7E-07 61.7 10.7 89 16-119 74-162 (366)
246 1u94_A RECA protein, recombina 96.5 0.01 3.4E-07 61.7 10.1 89 16-119 63-151 (356)
247 1v5w_A DMC1, meiotic recombina 96.4 0.015 5.1E-07 60.4 11.3 101 15-120 121-230 (343)
248 2z43_A DNA repair and recombin 96.4 0.014 4.9E-07 60.1 10.9 101 16-121 107-215 (324)
249 1jr3_D DNA polymerase III, del 96.4 0.026 8.8E-07 58.9 12.8 163 6-205 8-183 (343)
250 1um8_A ATP-dependent CLP prote 96.3 0.018 6.1E-07 61.1 11.1 24 17-40 73-96 (376)
251 2i1q_A DNA repair and recombin 96.3 0.014 4.7E-07 60.3 9.9 100 16-120 98-215 (322)
252 3ice_A Transcription terminati 96.3 0.0064 2.2E-07 62.4 7.0 51 7-58 164-216 (422)
253 3lda_A DNA repair protein RAD5 96.1 0.015 5E-07 61.4 9.3 99 16-119 178-283 (400)
254 1r6b_X CLPA protein; AAA+, N-t 96.0 0.0083 2.9E-07 70.3 7.7 36 17-57 489-524 (758)
255 1qvr_A CLPB protein; coiled co 96.0 0.0054 1.8E-07 72.7 6.0 39 17-57 589-627 (854)
256 4a74_A DNA repair and recombin 96.0 0.025 8.5E-07 55.1 10.0 56 16-72 25-84 (231)
257 1sky_E F1-ATPase, F1-ATP synth 96.0 0.029 9.9E-07 59.7 10.9 51 17-68 152-203 (473)
258 1pzn_A RAD51, DNA repair and r 95.9 0.019 6.6E-07 59.7 9.1 57 15-72 130-190 (349)
259 1ex7_A Guanylate kinase; subst 95.9 0.0048 1.6E-07 57.3 3.6 25 17-41 2-26 (186)
260 2ck3_D ATP synthase subunit be 95.9 0.019 6.5E-07 60.9 8.6 55 15-70 152-207 (482)
261 1ypw_A Transitional endoplasmi 95.8 0.018 6E-07 67.3 8.9 149 15-200 237-407 (806)
262 2c9o_A RUVB-like 1; hexameric 95.8 0.013 4.5E-07 63.7 7.4 48 6-56 51-100 (456)
263 2dr3_A UPF0273 protein PH0284; 95.8 0.031 1.1E-06 55.1 9.6 53 16-73 23-75 (247)
264 2kjq_A DNAA-related protein; s 95.7 0.012 4.1E-07 52.7 5.7 48 7-56 27-74 (149)
265 3dm5_A SRP54, signal recogniti 95.7 0.065 2.2E-06 56.9 11.9 39 15-55 99-137 (443)
266 1fx0_B ATP synthase beta chain 95.6 0.033 1.1E-06 59.4 9.2 104 15-121 164-278 (498)
267 3bh0_A DNAB-like replicative h 95.6 0.062 2.1E-06 55.0 11.2 52 16-71 68-119 (315)
268 2b8t_A Thymidine kinase; deoxy 95.5 0.0059 2E-07 58.6 2.7 113 15-146 11-125 (223)
269 1odf_A YGR205W, hypothetical 3 95.5 0.016 5.5E-07 58.4 6.0 54 14-67 29-83 (290)
270 3kb2_A SPBC2 prophage-derived 95.5 0.0084 2.9E-07 55.4 3.7 25 17-41 2-26 (173)
271 3c8u_A Fructokinase; YP_612366 95.4 0.011 3.9E-07 56.5 4.5 50 4-55 8-59 (208)
272 1qhx_A CPT, protein (chloramph 95.3 0.0095 3.2E-07 55.4 3.7 25 17-41 4-28 (178)
273 1pgv_A TMD-1, tropomodulin TMD 95.3 0.012 4.2E-07 54.8 4.1 109 360-468 37-168 (197)
274 1g5t_A COB(I)alamin adenosyltr 95.3 0.015 5.1E-07 53.9 4.6 121 17-147 29-163 (196)
275 3cmu_A Protein RECA, recombina 95.2 0.043 1.5E-06 68.9 9.8 90 15-119 1426-1515(2050)
276 3vaa_A Shikimate kinase, SK; s 95.2 0.012 4.2E-07 55.8 4.0 27 15-41 24-50 (199)
277 1tue_A Replication protein E1; 95.2 0.016 5.6E-07 53.8 4.6 37 5-41 46-83 (212)
278 3kl4_A SRP54, signal recogniti 95.2 0.076 2.6E-06 56.3 10.3 38 16-55 97-134 (433)
279 1rz3_A Hypothetical protein rb 95.2 0.016 5.6E-07 55.0 4.7 39 4-42 7-48 (201)
280 2xxa_A Signal recognition part 95.1 0.16 5.4E-06 54.2 12.6 52 4-56 79-139 (433)
281 3l0o_A Transcription terminati 95.1 0.014 4.9E-07 59.7 4.2 51 6-57 164-216 (427)
282 1vma_A Cell division protein F 95.0 0.095 3.3E-06 53.0 10.2 39 15-55 103-141 (306)
283 3trf_A Shikimate kinase, SK; a 94.9 0.015 5E-07 54.5 3.7 26 16-41 5-30 (185)
284 2px0_A Flagellar biosynthesis 94.9 0.075 2.6E-06 53.7 9.1 41 15-56 104-144 (296)
285 4eun_A Thermoresistant glucoki 94.9 0.017 5.9E-07 54.8 4.0 27 14-40 27-53 (200)
286 2ehv_A Hypothetical protein PH 94.9 0.066 2.3E-06 52.8 8.5 38 16-55 30-68 (251)
287 1kgd_A CASK, peripheral plasma 94.9 0.015 5.2E-07 54.0 3.5 26 16-41 5-30 (180)
288 1zuh_A Shikimate kinase; alpha 94.8 0.017 5.7E-07 53.1 3.7 27 15-41 6-32 (168)
289 3lw7_A Adenylate kinase relate 94.8 0.014 4.7E-07 54.1 3.2 20 17-36 2-21 (179)
290 3mfy_A V-type ATP synthase alp 94.8 0.13 4.3E-06 55.4 10.7 56 7-66 217-274 (588)
291 3uie_A Adenylyl-sulfate kinase 94.8 0.019 6.4E-07 54.5 4.1 28 14-41 23-50 (200)
292 3e70_C DPA, signal recognition 94.8 0.23 7.8E-06 50.8 12.4 57 15-73 128-185 (328)
293 3rfe_A Platelet glycoprotein I 94.8 0.029 1E-06 48.6 4.9 54 413-469 12-67 (130)
294 1xjc_A MOBB protein homolog; s 94.8 0.021 7.3E-07 51.8 4.1 29 15-43 3-31 (169)
295 1zp6_A Hypothetical protein AT 94.8 0.017 5.7E-07 54.4 3.6 25 15-39 8-32 (191)
296 1kag_A SKI, shikimate kinase I 94.8 0.015 5E-07 53.7 3.1 25 17-41 5-29 (173)
297 1ly1_A Polynucleotide kinase; 94.7 0.017 5.7E-07 53.8 3.5 22 17-38 3-24 (181)
298 1nks_A Adenylate kinase; therm 94.7 0.019 6.4E-07 54.2 3.8 26 17-42 2-27 (194)
299 1cr0_A DNA primase/helicase; R 94.7 0.19 6.6E-06 50.9 11.6 53 15-70 34-86 (296)
300 3t61_A Gluconokinase; PSI-biol 94.6 0.016 5.4E-07 55.2 3.1 25 16-40 18-42 (202)
301 3iij_A Coilin-interacting nucl 94.6 0.018 6.2E-07 53.5 3.4 26 16-41 11-36 (180)
302 3tau_A Guanylate kinase, GMP k 94.6 0.021 7.1E-07 54.6 3.8 27 15-41 7-33 (208)
303 1j8m_F SRP54, signal recogniti 94.5 0.19 6.6E-06 50.6 11.0 39 16-56 98-136 (297)
304 2rhm_A Putative kinase; P-loop 94.5 0.023 8E-07 53.5 4.0 25 16-40 5-29 (193)
305 3rfe_A Platelet glycoprotein I 94.5 0.049 1.7E-06 47.2 5.7 51 368-420 12-66 (130)
306 2qor_A Guanylate kinase; phosp 94.5 0.019 6.6E-07 54.6 3.4 27 15-41 11-37 (204)
307 1y63_A LMAJ004144AAA protein; 94.5 0.024 8.2E-07 52.9 4.0 25 15-39 9-33 (184)
308 4a1f_A DNAB helicase, replicat 94.5 0.21 7.3E-06 51.0 11.3 52 16-71 46-97 (338)
309 1kht_A Adenylate kinase; phosp 94.5 0.024 8.1E-07 53.4 3.9 26 17-42 4-29 (192)
310 1via_A Shikimate kinase; struc 94.5 0.02 6.7E-07 53.0 3.2 25 17-41 5-29 (175)
311 2yvu_A Probable adenylyl-sulfa 94.5 0.044 1.5E-06 51.2 5.7 29 15-43 12-40 (186)
312 3umf_A Adenylate kinase; rossm 94.4 0.026 9E-07 53.8 4.0 27 15-41 28-54 (217)
313 2ze6_A Isopentenyl transferase 94.4 0.023 8E-07 56.1 3.8 25 17-41 2-26 (253)
314 2c95_A Adenylate kinase 1; tra 94.4 0.026 9E-07 53.3 4.0 26 15-40 8-33 (196)
315 1ukz_A Uridylate kinase; trans 94.4 0.026 9E-07 53.7 4.0 27 14-40 13-39 (203)
316 3vr4_D V-type sodium ATPase su 94.4 0.035 1.2E-06 58.5 5.1 98 16-121 151-260 (465)
317 3a00_A Guanylate kinase, GMP k 94.4 0.019 6.6E-07 53.7 3.0 25 17-41 2-26 (186)
318 1knq_A Gluconate kinase; ALFA/ 94.4 0.027 9.4E-07 52.0 4.0 25 16-40 8-32 (175)
319 3ney_A 55 kDa erythrocyte memb 94.3 0.027 9.2E-07 52.6 3.8 27 15-41 18-44 (197)
320 3tr0_A Guanylate kinase, GMP k 94.3 0.026 8.8E-07 53.8 3.8 25 16-40 7-31 (205)
321 3jvv_A Twitching mobility prot 94.3 0.012 4E-07 61.2 1.4 113 16-151 123-235 (356)
322 2hf9_A Probable hydrogenase ni 94.3 0.03 1E-06 54.3 4.3 37 6-42 28-64 (226)
323 3co5_A Putative two-component 94.2 0.012 4E-07 52.4 1.1 24 17-40 28-51 (143)
324 1gvn_B Zeta; postsegregational 94.2 0.035 1.2E-06 55.9 4.7 26 15-40 32-57 (287)
325 2iyv_A Shikimate kinase, SK; t 94.2 0.023 7.9E-07 53.0 3.0 25 17-41 3-27 (184)
326 2bdt_A BH3686; alpha-beta prot 94.1 0.028 9.5E-07 52.7 3.5 22 17-38 3-24 (189)
327 1ls1_A Signal recognition part 94.1 0.19 6.4E-06 50.7 9.8 39 16-56 98-136 (295)
328 1tev_A UMP-CMP kinase; ploop, 94.1 0.031 1.1E-06 52.7 3.8 25 16-40 3-27 (196)
329 2j41_A Guanylate kinase; GMP, 94.1 0.032 1.1E-06 53.3 3.9 25 16-40 6-30 (207)
330 1ye8_A Protein THEP1, hypothet 94.1 0.034 1.2E-06 51.3 3.9 25 18-42 2-26 (178)
331 1e6c_A Shikimate kinase; phosp 94.1 0.026 8.8E-07 52.0 3.1 25 17-41 3-27 (173)
332 1uf9_A TT1252 protein; P-loop, 94.1 0.031 1.1E-06 53.1 3.8 26 14-39 6-31 (203)
333 2wsm_A Hydrogenase expression/ 94.1 0.029 9.8E-07 54.2 3.6 37 5-41 19-55 (221)
334 2if2_A Dephospho-COA kinase; a 94.0 0.029 9.8E-07 53.4 3.5 22 17-38 2-23 (204)
335 2yhs_A FTSY, cell division pro 94.0 0.38 1.3E-05 51.5 12.3 42 15-59 292-333 (503)
336 2jaq_A Deoxyguanosine kinase; 94.0 0.032 1.1E-06 53.1 3.8 24 18-41 2-25 (205)
337 3cm0_A Adenylate kinase; ATP-b 94.0 0.035 1.2E-06 51.9 4.0 25 16-40 4-28 (186)
338 3asz_A Uridine kinase; cytidin 94.0 0.031 1E-06 53.6 3.6 27 15-41 5-31 (211)
339 2vli_A Antibiotic resistance p 94.0 0.022 7.4E-07 53.2 2.5 26 16-41 5-30 (183)
340 3a4m_A L-seryl-tRNA(SEC) kinas 94.0 0.032 1.1E-06 55.4 3.8 26 16-41 4-29 (260)
341 2grj_A Dephospho-COA kinase; T 94.0 0.033 1.1E-06 52.1 3.7 26 15-40 11-36 (192)
342 2bwj_A Adenylate kinase 5; pho 94.0 0.034 1.1E-06 52.7 3.8 26 16-41 12-37 (199)
343 2zts_A Putative uncharacterize 93.9 0.14 5E-06 50.3 8.6 49 16-67 30-78 (251)
344 1cke_A CK, MSSA, protein (cyti 93.9 0.034 1.2E-06 54.0 3.8 24 17-40 6-29 (227)
345 2z0h_A DTMP kinase, thymidylat 93.9 0.1 3.5E-06 49.2 7.0 25 18-42 2-26 (197)
346 1lvg_A Guanylate kinase, GMP k 93.9 0.027 9.3E-07 53.2 2.9 26 16-41 4-29 (198)
347 2ga8_A Hypothetical 39.9 kDa p 93.9 0.052 1.8E-06 55.5 5.1 30 13-42 21-50 (359)
348 2pt5_A Shikimate kinase, SK; a 93.9 0.038 1.3E-06 50.6 3.8 24 18-41 2-25 (168)
349 2plr_A DTMP kinase, probable t 93.8 0.039 1.3E-06 52.9 4.0 27 17-43 5-31 (213)
350 2f1r_A Molybdopterin-guanine d 93.8 0.034 1.2E-06 50.8 3.3 39 16-54 2-40 (171)
351 1qf9_A UMP/CMP kinase, protein 93.8 0.036 1.2E-06 52.1 3.7 26 16-41 6-31 (194)
352 3vr4_A V-type sodium ATPase ca 93.8 0.2 6.9E-06 54.1 9.6 56 7-66 222-279 (600)
353 2bbw_A Adenylate kinase 4, AK4 93.8 0.039 1.3E-06 54.3 4.0 27 15-41 26-52 (246)
354 1aky_A Adenylate kinase; ATP:A 93.8 0.04 1.4E-06 53.2 4.0 27 15-41 3-29 (220)
355 2qt1_A Nicotinamide riboside k 93.8 0.036 1.2E-06 52.9 3.6 25 15-39 20-44 (207)
356 2cdn_A Adenylate kinase; phosp 93.8 0.038 1.3E-06 52.4 3.8 26 16-41 20-45 (201)
357 2j37_W Signal recognition part 93.8 0.48 1.7E-05 51.4 12.8 39 15-55 100-138 (504)
358 3cmw_A Protein RECA, recombina 93.7 0.16 5.6E-06 63.0 9.9 90 16-120 383-472 (1706)
359 4gp7_A Metallophosphoesterase; 93.7 0.03 1E-06 51.4 2.8 22 16-37 9-30 (171)
360 1zd8_A GTP:AMP phosphotransfer 93.7 0.039 1.3E-06 53.6 3.7 25 16-40 7-31 (227)
361 3fwy_A Light-independent proto 93.6 0.084 2.9E-06 53.7 6.2 41 14-56 46-86 (314)
362 2pbr_A DTMP kinase, thymidylat 93.6 0.042 1.4E-06 51.7 3.8 25 18-42 2-26 (195)
363 1jjv_A Dephospho-COA kinase; P 93.6 0.036 1.2E-06 52.8 3.4 22 17-38 3-24 (206)
364 2wwf_A Thymidilate kinase, put 93.6 0.045 1.5E-06 52.4 4.0 32 16-48 10-41 (212)
365 1nn5_A Similar to deoxythymidy 93.6 0.047 1.6E-06 52.4 4.2 32 16-48 9-40 (215)
366 3gqb_B V-type ATP synthase bet 93.6 0.054 1.9E-06 57.0 4.8 97 16-120 147-262 (464)
367 3fb4_A Adenylate kinase; psych 93.6 0.042 1.4E-06 52.8 3.8 23 18-40 2-24 (216)
368 2c61_A A-type ATP synthase non 93.6 0.048 1.7E-06 57.8 4.5 98 16-121 152-261 (469)
369 3cf2_A TER ATPase, transitiona 93.6 0.032 1.1E-06 64.0 3.3 128 16-177 511-662 (806)
370 3cmw_A Protein RECA, recombina 93.5 0.18 6.1E-06 62.6 9.9 90 15-119 1430-1519(1706)
371 1zak_A Adenylate kinase; ATP:A 93.5 0.04 1.4E-06 53.2 3.5 27 15-41 4-30 (222)
372 2p5t_B PEZT; postsegregational 93.5 0.047 1.6E-06 53.9 4.0 27 15-41 31-57 (253)
373 2ffh_A Protein (FFH); SRP54, s 93.5 0.3 1E-05 51.7 10.3 38 16-55 98-135 (425)
374 1htw_A HI0065; nucleotide-bind 93.5 0.049 1.7E-06 49.1 3.7 27 14-40 31-57 (158)
375 3aez_A Pantothenate kinase; tr 93.4 0.099 3.4E-06 53.2 6.4 43 14-56 88-130 (312)
376 1pgv_A TMD-1, tropomodulin TMD 93.4 0.02 6.9E-07 53.3 1.1 85 359-443 65-168 (197)
377 1znw_A Guanylate kinase, GMP k 93.4 0.046 1.6E-06 52.1 3.7 27 15-41 19-45 (207)
378 1uj2_A Uridine-cytidine kinase 93.4 0.045 1.5E-06 54.1 3.7 28 14-41 20-47 (252)
379 2jeo_A Uridine-cytidine kinase 93.4 0.048 1.6E-06 53.6 3.8 26 15-40 24-49 (245)
380 3dl0_A Adenylate kinase; phosp 93.4 0.047 1.6E-06 52.5 3.7 23 18-40 2-24 (216)
381 1s96_A Guanylate kinase, GMP k 93.4 0.049 1.7E-06 52.3 3.7 27 15-41 15-41 (219)
382 3cmu_A Protein RECA, recombina 93.4 0.18 6.3E-06 63.4 9.6 89 16-119 383-471 (2050)
383 1z6g_A Guanylate kinase; struc 93.4 0.04 1.4E-06 53.0 3.1 26 15-40 22-47 (218)
384 4e22_A Cytidylate kinase; P-lo 93.3 0.051 1.8E-06 53.6 4.0 25 16-40 27-51 (252)
385 3tlx_A Adenylate kinase 2; str 93.3 0.054 1.8E-06 53.1 4.1 26 15-40 28-53 (243)
386 1rj9_A FTSY, signal recognitio 93.3 0.08 2.7E-06 53.6 5.4 28 15-42 101-128 (304)
387 3zvl_A Bifunctional polynucleo 93.3 0.13 4.5E-06 54.9 7.3 26 15-40 257-282 (416)
388 2v54_A DTMP kinase, thymidylat 93.2 0.052 1.8E-06 51.5 3.7 25 16-40 4-28 (204)
389 3oaa_A ATP synthase subunit al 93.2 0.11 3.9E-06 55.2 6.4 51 15-69 161-214 (513)
390 2q6t_A DNAB replication FORK h 93.1 0.44 1.5E-05 51.3 11.3 52 16-70 200-251 (444)
391 1gtv_A TMK, thymidylate kinase 93.1 0.035 1.2E-06 53.2 2.4 25 18-42 2-26 (214)
392 1np6_A Molybdopterin-guanine d 93.1 0.099 3.4E-06 47.9 5.1 28 15-42 5-32 (174)
393 2pez_A Bifunctional 3'-phospho 93.0 0.058 2E-06 50.0 3.7 27 16-42 5-31 (179)
394 3io3_A DEHA2D07832P; chaperone 93.0 0.13 4.5E-06 53.1 6.6 48 9-58 11-60 (348)
395 3sr0_A Adenylate kinase; phosp 93.0 0.062 2.1E-06 50.9 3.8 24 18-41 2-25 (206)
396 1zu4_A FTSY; GTPase, signal re 93.0 0.11 3.7E-06 53.1 5.8 39 16-56 105-143 (320)
397 2i3b_A HCR-ntpase, human cance 93.0 0.056 1.9E-06 50.4 3.4 25 17-41 2-26 (189)
398 1m7g_A Adenylylsulfate kinase; 92.9 0.077 2.6E-06 50.7 4.5 28 14-41 23-50 (211)
399 3r20_A Cytidylate kinase; stru 92.9 0.064 2.2E-06 51.7 3.8 26 16-41 9-34 (233)
400 3tqc_A Pantothenate kinase; bi 92.9 0.12 4.2E-06 52.4 6.0 42 15-56 91-132 (321)
401 2f6r_A COA synthase, bifunctio 92.9 0.057 2E-06 54.2 3.6 23 15-37 74-96 (281)
402 3be4_A Adenylate kinase; malar 92.8 0.055 1.9E-06 52.0 3.2 26 16-41 5-30 (217)
403 2ck3_A ATP synthase subunit al 92.8 0.14 4.8E-06 54.7 6.5 99 15-121 161-274 (510)
404 1q57_A DNA primase/helicase; d 92.8 0.41 1.4E-05 52.6 10.7 52 16-70 242-293 (503)
405 1vht_A Dephospho-COA kinase; s 92.8 0.068 2.3E-06 51.4 3.8 23 16-38 4-26 (218)
406 3nwj_A ATSK2; P loop, shikimat 92.7 0.056 1.9E-06 52.9 3.1 26 16-41 48-73 (250)
407 2qe7_A ATP synthase subunit al 92.7 0.12 4.2E-06 55.1 5.9 95 15-121 161-266 (502)
408 1ak2_A Adenylate kinase isoenz 92.7 0.076 2.6E-06 51.7 4.1 26 16-41 16-41 (233)
409 3b9q_A Chloroplast SRP recepto 92.7 0.12 4.1E-06 52.3 5.7 27 16-42 100-126 (302)
410 2r9v_A ATP synthase subunit al 92.7 0.11 3.6E-06 55.6 5.4 95 15-121 174-279 (515)
411 3ake_A Cytidylate kinase; CMP 92.7 0.071 2.4E-06 50.8 3.8 25 17-41 3-27 (208)
412 3iqw_A Tail-anchored protein t 92.7 0.089 3.1E-06 54.0 4.7 50 9-60 9-58 (334)
413 3bgw_A DNAB-like replicative h 92.7 0.53 1.8E-05 50.5 10.9 51 16-70 197-247 (444)
414 1e4v_A Adenylate kinase; trans 92.6 0.071 2.4E-06 51.1 3.8 23 18-40 2-24 (214)
415 2xb4_A Adenylate kinase; ATP-b 92.6 0.073 2.5E-06 51.4 3.8 23 18-40 2-24 (223)
416 3d3q_A TRNA delta(2)-isopenten 92.6 0.069 2.4E-06 54.5 3.7 25 17-41 8-32 (340)
417 3end_A Light-independent proto 92.6 0.16 5.4E-06 51.9 6.6 44 14-59 39-82 (307)
418 1u0j_A DNA replication protein 92.6 0.13 4.3E-06 50.4 5.4 36 5-40 91-128 (267)
419 3lnc_A Guanylate kinase, GMP k 92.5 0.047 1.6E-06 53.1 2.3 25 16-40 27-52 (231)
420 2r6a_A DNAB helicase, replicat 92.5 0.47 1.6E-05 51.3 10.4 50 16-68 203-252 (454)
421 3p32_A Probable GTPase RV1496/ 92.5 0.21 7.3E-06 52.0 7.4 37 6-42 67-105 (355)
422 3crm_A TRNA delta(2)-isopenten 92.4 0.075 2.6E-06 53.8 3.7 25 17-41 6-30 (323)
423 3exa_A TRNA delta(2)-isopenten 92.4 0.078 2.7E-06 53.0 3.7 25 16-40 3-27 (322)
424 2onk_A Molybdate/tungstate ABC 92.4 0.077 2.6E-06 51.6 3.6 26 14-40 23-48 (240)
425 1a7j_A Phosphoribulokinase; tr 92.3 0.041 1.4E-06 55.4 1.6 42 15-58 4-45 (290)
426 4eaq_A DTMP kinase, thymidylat 92.3 0.15 5E-06 49.3 5.5 28 15-42 25-52 (229)
427 2r44_A Uncharacterized protein 92.2 0.14 4.9E-06 52.9 5.8 25 17-41 47-71 (331)
428 3hws_A ATP-dependent CLP prote 92.2 0.11 3.8E-06 54.5 4.9 26 16-41 51-76 (363)
429 2eyu_A Twitching motility prot 92.1 0.19 6.6E-06 49.6 6.2 112 15-150 24-136 (261)
430 2r8r_A Sensor protein; KDPD, P 92.1 0.23 7.9E-06 47.1 6.4 40 18-59 8-47 (228)
431 3lv8_A DTMP kinase, thymidylat 92.1 0.29 9.8E-06 47.3 7.3 36 16-52 27-62 (236)
432 1sq5_A Pantothenate kinase; P- 92.1 0.086 2.9E-06 53.8 3.8 44 14-57 78-121 (308)
433 3foz_A TRNA delta(2)-isopenten 92.0 0.11 3.7E-06 52.0 4.2 27 15-41 9-35 (316)
434 3upu_A ATP-dependent DNA helic 91.9 0.22 7.4E-06 54.1 6.9 40 3-43 33-72 (459)
435 3tif_A Uncharacterized ABC tra 91.9 0.081 2.8E-06 51.4 3.2 27 15-41 30-56 (235)
436 3a8t_A Adenylate isopentenyltr 91.9 0.08 2.7E-06 53.7 3.2 24 17-40 41-64 (339)
437 2og2_A Putative signal recogni 91.8 0.15 5.2E-06 52.7 5.2 27 16-42 157-183 (359)
438 4tmk_A Protein (thymidylate ki 91.8 0.34 1.2E-05 46.0 7.2 27 17-43 4-30 (213)
439 2pcj_A ABC transporter, lipopr 91.7 0.079 2.7E-06 51.1 2.8 25 16-40 30-54 (224)
440 2orw_A Thymidine kinase; TMTK, 91.7 0.21 7.2E-06 46.3 5.6 27 17-43 4-30 (184)
441 3gqb_A V-type ATP synthase alp 91.6 0.2 6.9E-06 53.9 5.9 39 15-57 220-258 (578)
442 3b85_A Phosphate starvation-in 91.5 0.074 2.5E-06 50.5 2.3 23 17-39 23-45 (208)
443 2cbz_A Multidrug resistance-as 91.5 0.097 3.3E-06 50.9 3.2 25 16-40 31-55 (237)
444 3ld9_A DTMP kinase, thymidylat 91.4 0.29 1E-05 46.7 6.3 29 14-42 19-47 (223)
445 1b0u_A Histidine permease; ABC 91.3 0.1 3.4E-06 51.7 3.1 26 15-40 31-56 (262)
446 4edh_A DTMP kinase, thymidylat 91.3 0.39 1.3E-05 45.7 7.1 32 16-48 6-37 (213)
447 1ypw_A Transitional endoplasmi 91.3 0.028 9.4E-07 65.7 -1.1 26 16-41 511-536 (806)
448 1fx0_A ATP synthase alpha chai 91.3 0.1 3.5E-06 55.7 3.3 48 16-67 163-213 (507)
449 1q3t_A Cytidylate kinase; nucl 91.3 0.14 4.8E-06 49.8 4.1 26 15-40 15-40 (236)
450 1ltq_A Polynucleotide kinase; 91.2 0.11 3.9E-06 52.8 3.5 23 17-39 3-25 (301)
451 2afh_E Nitrogenase iron protei 91.2 0.26 8.7E-06 49.8 6.1 41 16-58 2-42 (289)
452 2zu0_C Probable ATP-dependent 91.2 0.12 4.3E-06 51.2 3.7 24 16-39 46-69 (267)
453 2v9p_A Replication protein E1; 91.2 0.13 4.5E-06 51.8 3.8 27 14-40 124-150 (305)
454 3gfo_A Cobalt import ATP-bindi 91.1 0.097 3.3E-06 52.1 2.8 24 16-39 34-57 (275)
455 2olj_A Amino acid ABC transpor 91.1 0.11 3.7E-06 51.3 3.1 26 15-40 49-74 (263)
456 2d2e_A SUFC protein; ABC-ATPas 91.1 0.12 4E-06 50.8 3.4 24 16-39 29-52 (250)
457 1oix_A RAS-related protein RAB 91.1 0.13 4.3E-06 48.2 3.5 25 16-40 29-53 (191)
458 2qmh_A HPR kinase/phosphorylas 91.1 0.085 2.9E-06 48.8 2.1 25 16-40 34-58 (205)
459 1sgw_A Putative ABC transporte 91.0 0.087 3E-06 50.2 2.3 25 16-40 35-59 (214)
460 2ocp_A DGK, deoxyguanosine kin 91.0 0.14 4.7E-06 50.1 3.8 26 16-41 2-27 (241)
461 1svm_A Large T antigen; AAA+ f 91.0 0.13 4.6E-06 53.5 3.8 27 14-40 167-193 (377)
462 1cp2_A CP2, nitrogenase iron p 91.0 0.26 9E-06 49.0 5.9 40 17-58 2-41 (269)
463 2v3c_C SRP54, signal recogniti 90.9 0.15 5.3E-06 54.3 4.3 38 16-55 99-136 (432)
464 1ji0_A ABC transporter; ATP bi 90.9 0.11 3.7E-06 50.7 2.9 25 16-40 32-56 (240)
465 1m2o_B GTP-binding protein SAR 90.9 0.14 4.6E-06 48.0 3.5 25 15-39 22-46 (190)
466 2pze_A Cystic fibrosis transme 90.9 0.11 3.7E-06 50.3 2.8 25 16-40 34-58 (229)
467 4g1u_C Hemin import ATP-bindin 90.9 0.11 3.7E-06 51.6 2.8 25 16-40 37-61 (266)
468 1vpl_A ABC transporter, ATP-bi 90.9 0.12 4.1E-06 50.8 3.1 25 15-39 40-64 (256)
469 1g6h_A High-affinity branched- 90.8 0.11 3.7E-06 51.3 2.9 25 16-40 33-57 (257)
470 2ff7_A Alpha-hemolysin translo 90.8 0.11 3.8E-06 50.8 2.9 25 16-40 35-59 (247)
471 2dyk_A GTP-binding protein; GT 90.8 0.15 5.1E-06 46.0 3.5 23 17-39 2-24 (161)
472 1mv5_A LMRA, multidrug resista 90.7 0.12 4.2E-06 50.4 3.1 25 15-39 27-51 (243)
473 3eph_A TRNA isopentenyltransfe 90.7 0.15 5E-06 53.1 3.7 25 17-41 3-27 (409)
474 2yv5_A YJEQ protein; hydrolase 90.7 0.21 7.2E-06 50.6 4.9 33 4-40 156-188 (302)
475 3hjn_A DTMP kinase, thymidylat 90.7 0.5 1.7E-05 44.3 7.1 26 18-43 2-27 (197)
476 2ghi_A Transport protein; mult 90.6 0.13 4.4E-06 50.8 3.2 24 16-39 46-69 (260)
477 1g8p_A Magnesium-chelatase 38 90.6 0.1 3.4E-06 54.6 2.5 26 16-41 45-70 (350)
478 4dzz_A Plasmid partitioning pr 90.6 0.29 9.9E-06 46.3 5.6 42 17-60 2-44 (206)
479 1yrb_A ATP(GTP)binding protein 90.6 0.27 9.3E-06 48.7 5.6 38 15-55 13-50 (262)
480 1tq4_A IIGP1, interferon-induc 90.6 0.13 4.4E-06 54.3 3.3 35 5-39 56-92 (413)
481 2ixe_A Antigen peptide transpo 90.6 0.13 4.5E-06 51.1 3.2 25 16-40 45-69 (271)
482 1nlf_A Regulatory protein REPA 90.6 0.13 4.6E-06 51.5 3.3 41 16-56 30-78 (279)
483 2qi9_C Vitamin B12 import ATP- 90.5 0.12 4.2E-06 50.5 2.8 25 16-40 26-50 (249)
484 2f9l_A RAB11B, member RAS onco 90.5 0.16 5.3E-06 48.0 3.5 23 17-39 6-28 (199)
485 2yz2_A Putative ABC transporte 90.4 0.14 4.7E-06 50.8 3.2 25 15-39 32-56 (266)
486 2nq2_C Hypothetical ABC transp 90.3 0.13 4.5E-06 50.5 2.8 25 16-40 31-55 (253)
487 3sop_A Neuronal-specific septi 90.3 0.16 5.5E-06 50.5 3.5 24 18-41 4-27 (270)
488 2wji_A Ferrous iron transport 90.2 0.17 5.7E-06 46.0 3.4 23 17-39 4-26 (165)
489 2ihy_A ABC transporter, ATP-bi 90.1 0.13 4.6E-06 51.2 2.8 26 16-41 47-72 (279)
490 2ged_A SR-beta, signal recogni 90.1 0.27 9.2E-06 45.9 4.8 26 15-40 47-72 (193)
491 1zj6_A ADP-ribosylation factor 89.9 0.28 9.5E-06 45.6 4.7 35 4-39 5-39 (187)
492 3fvq_A Fe(3+) IONS import ATP- 89.9 0.18 6.2E-06 52.0 3.6 26 16-41 30-55 (359)
493 1g8f_A Sulfate adenylyltransfe 89.9 0.19 6.6E-06 54.5 4.0 28 15-42 394-421 (511)
494 3zq6_A Putative arsenical pump 89.9 0.3 1E-05 50.0 5.4 44 16-61 14-57 (324)
495 1moz_A ARL1, ADP-ribosylation 89.9 0.18 6.1E-06 46.6 3.4 35 4-38 5-40 (183)
496 3fkq_A NTRC-like two-domain pr 89.8 0.48 1.6E-05 49.7 7.0 40 14-55 141-181 (373)
497 2zej_A Dardarin, leucine-rich 89.7 0.14 4.9E-06 47.5 2.6 22 18-39 4-25 (184)
498 1tf7_A KAIC; homohexamer, hexa 89.7 0.58 2E-05 51.7 7.8 97 17-118 40-147 (525)
499 3kta_A Chromosome segregation 89.7 0.19 6.3E-06 46.6 3.3 24 17-40 27-50 (182)
500 2vp4_A Deoxynucleoside kinase; 89.7 0.13 4.4E-06 49.9 2.2 25 15-39 19-43 (230)
No 1
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.3e-36 Score=346.89 Aligned_cols=476 Identities=18% Similarity=0.166 Sum_probs=336.7
Q ss_pred hhhccceEEEeecCCccCCCCC-C-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC-CcccccCCCc
Q 002939 313 YLLKKCSTISLHGNNISEIPQG-W-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDL 389 (864)
Q Consensus 313 ~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L 389 (864)
+.++++++|++++|.++.++.. + .+++|++|+++++... .+++..|.++++|++|++++|.+..+ |..|+++++|
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE--TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc--ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence 4567999999999999988763 3 8999999999985443 56677789999999999999999987 8889999999
Q ss_pred cEEEecCcccccc--ccccccCcccEEeCCCCCCc--cCchhhccccccceecccccccccccChhhhhcCcccc----e
Q 002939 390 RTLCLDGCKLEDI--RIIGELKELEILSLQGCDIE--HLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLE----E 461 (864)
Q Consensus 390 ~~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~----~ 461 (864)
++|++++|.++.+ ..++++++|++|++++|.++ .+|..++++++|++|++++|. +..+++..++.+.+|+ .
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~ 185 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLS 185 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCE
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccce
Confidence 9999999999887 46999999999999999988 579999999999999999996 7888777677777665 6
Q ss_pred eecccccccc---ccccCCcchhhhcCCCCccCC----CCccCcc--------------------------------cce
Q 002939 462 LYMATCCIKW---EISNCSLLEEIVGKEGGVEAD----PSFVFPR--------------------------------LTI 502 (864)
Q Consensus 462 L~l~~~~~~~---~~~~~~~L~~L~~~~~~~~~~----~~~~~~~--------------------------------L~~ 502 (864)
|++++|.+.. ......+|+.|+++++.+... ....+++ ++.
T Consensus 186 L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 265 (606)
T 3vq2_A 186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265 (606)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEE
T ss_pred eeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhh
Confidence 8888887643 223333677777766644210 0001111 111
Q ss_pred ecccccccccccccccccccCCCcceEEEeeCCCcccccccccccc---cccccCcccccCCCccccccchhhhcCCcce
Q 002939 503 LQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLH---ENNEEGQLIDVPVPAQQSLFLVEKVLPNLEE 579 (864)
Q Consensus 503 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 579 (864)
+.+...+.+.+..+. ...+++|+.|++.++.. ..++ .+.... .+...++-. ..++ .. .+++|++
T Consensus 266 l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~-~~l~-~l~~~~~L~~L~l~~n~l-~~lp------~~--~l~~L~~ 332 (606)
T 3vq2_A 266 FRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSI-KYLE-DVPKHFKWQSLSIIRCQL-KQFP------TL--DLPFLKS 332 (606)
T ss_dssp EEECCCTTCCGGGGS--CGGGTTCSEEEEESCCC-CCCC-CCCTTCCCSEEEEESCCC-SSCC------CC--CCSSCCE
T ss_pred eeccccccccccccc--cccCCCCCEEEecCccc-hhhh-hccccccCCEEEcccccC-cccc------cC--CCCccce
Confidence 222122222222221 33455666666665432 2232 111111 111111000 0011 11 3789999
Q ss_pred eecccccccccccccccCcccccCccEEEeecCCccccc--hhHHHHcccccEEEEEccccccccccccchhhhcccccc
Q 002939 580 LRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLA--PDLLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLAR 657 (864)
Q Consensus 580 L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~ 657 (864)
|++++|.... ..+...+++|++|++++|.+.... +..+..+++|++|++++|.+..+ |..+..+++
T Consensus 333 L~l~~n~~~~-----~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-------~~~~~~l~~ 400 (606)
T 3vq2_A 333 LTLTMNKGSI-----SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-------SANFMGLEE 400 (606)
T ss_dssp EEEESCSSCE-----ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-------CCCCTTCTT
T ss_pred eeccCCcCcc-----chhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-------hhhccCCCC
Confidence 9999995332 223345889999999999988774 56688999999999999998543 456778999
Q ss_pred cceeecCCCcCccccccccccccccccccCccEEEeecccccccccCCccccCCccEEEEecCcCceeeechhhhhhhcc
Q 002939 658 IKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKNLLPSSASFRCLTKLSVWCCEQLINLVTSSAAKNLVQ 737 (864)
Q Consensus 658 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 737 (864)
|+.|++++| .+..+ ........+++|++|++++|.-....+..+..+++|++|++++| .+.....+..+..+++
T Consensus 401 L~~L~l~~n-~l~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 401 LQHLDFQHS-TLKRV----TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTN 474 (606)
T ss_dssp CCEEECTTS-EEEST----TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTT
T ss_pred CCeeECCCC-ccCCc----cChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCC
Confidence 999999995 34333 11133457899999999996544445556788999999999986 4554223456788999
Q ss_pred ccEEEecCccchHHhhhccccccCcceeeccccCeeecCccccccccccCCceeecCccceeecccCCCccccccCcccC
Q 002939 738 LVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFCSANYTFKFPSLCYLSVSACPKMKIFCRGVLSA 817 (864)
Q Consensus 738 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~lp~~~~~~ 817 (864)
|++|++++|. ++.+++..+.+ +++|+.|++++| .++.+.+ ..+.++++|++|++++|+ ++.+|..+..+
T Consensus 475 L~~L~Ls~n~-l~~~~~~~~~~-------l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l 543 (606)
T 3vq2_A 475 LTFLDLSKCQ-LEQISWGVFDT-------LHRLQLLNMSHN-NLLFLDS-SHYNQLYSLSTLDCSFNR-IETSKGILQHF 543 (606)
T ss_dssp CCEEECTTSC-CCEECTTTTTT-------CTTCCEEECCSS-CCSCEEG-GGTTTCTTCCEEECTTSC-CCCEESCGGGS
T ss_pred CCEEECCCCc-CCccChhhhcc-------cccCCEEECCCC-cCCCcCH-HHccCCCcCCEEECCCCc-CcccCHhHhhh
Confidence 9999999974 44444344444 899999999995 7777644 346789999999999987 78999988888
Q ss_pred C-ccceEeeCC-cccccc
Q 002939 818 P-RLEKVRLND-QNYWDA 833 (864)
Q Consensus 818 ~-~L~~l~l~~-~~~~~~ 833 (864)
+ +|++|++++ .|..+.
T Consensus 544 ~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 544 PKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp CTTCCEEECCSCCCCCSS
T ss_pred cccCcEEEccCCCcccCC
Confidence 7 599999994 444433
No 2
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-34 Score=334.75 Aligned_cols=482 Identities=15% Similarity=0.126 Sum_probs=328.9
Q ss_pred hhhhccceEEEeecCCccCCCC-CC-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC-CcccccCCC
Q 002939 312 KYLLKKCSTISLHGNNISEIPQ-GW-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTD 388 (864)
Q Consensus 312 ~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~ 388 (864)
...+..+++|++++|.++.+++ .+ .+++|++|+++++... .+.+..|.++++|++|++++|.+..+ |..|+++++
T Consensus 29 ~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 29 GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY--WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp TTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred CCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccc--eeChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence 3456689999999999998854 34 8999999999986543 46667789999999999999999866 778999999
Q ss_pred ccEEEecCcccccc--ccccccCcccEEeCCCCCCccCc-hhhccccccceecccccccccccChhhhhcCcccc--eee
Q 002939 389 LRTLCLDGCKLEDI--RIIGELKELEILSLQGCDIEHLP-REIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLE--ELY 463 (864)
Q Consensus 389 L~~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~--~L~ 463 (864)
|++|++++|.++.+ ..++++++|++|++++|.++.++ ..+..+++|++|++++|. +..+++..++.+++|+ .|+
T Consensus 107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~ 185 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLN 185 (606)
T ss_dssp CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEE
T ss_pred ccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEe
Confidence 99999999999987 56899999999999999998762 344459999999999996 8888888899999999 888
Q ss_pred cccccccc---ccccCCcchhhhcCCCCc--------------------------cCCCCccC-----cccceecccccc
Q 002939 464 MATCCIKW---EISNCSLLEEIVGKEGGV--------------------------EADPSFVF-----PRLTILQLCYLP 509 (864)
Q Consensus 464 l~~~~~~~---~~~~~~~L~~L~~~~~~~--------------------------~~~~~~~~-----~~L~~L~l~~~~ 509 (864)
+++|.+.. .......|+.+.++++.. .......| .+++.|+++++
T Consensus 186 l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n- 264 (606)
T 3t6q_A 186 LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH- 264 (606)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC-
T ss_pred cCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC-
Confidence 88887643 222233444443333210 00000001 13444444442
Q ss_pred cccccccccccccCCCcceEEEeeCCCccccccccccccccc---ccCcccccCCCccccccchhhhcCCcceeeccccc
Q 002939 510 ELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENN---EEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKK 586 (864)
Q Consensus 510 ~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 586 (864)
.+..+... ....+++|+.|++++|. +..+|..+..+..+. ..++- + ..........+++|++|++++|.
T Consensus 265 ~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~----l--~~~~~~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 265 YFFNISSN-TFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANK----F--ENLCQISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp CCSSCCTT-TTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCC----C--SBGGGGCGGGCTTCSEEECCSCS
T ss_pred ccCccCHH-HhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCC----c--CcCchhhhhccCcCCEEECCCCC
Confidence 22222221 12345556666665542 333433322211111 00000 0 00001122347889999999885
Q ss_pred ccccccccccCcc---cccCccEEEeecCCccccc--hhHHHHcccccEEEEEccccccccccccchhhhccccccccee
Q 002939 587 DITKIWQGQFPDH---LLNKLKVLAIENDKSEVLA--PDLLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCL 661 (864)
Q Consensus 587 ~~~~~~~~~~p~~---~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L 661 (864)
..+.+|.. .+++|++|++++|.+.... +..+..+++|++|++++|.+.. ..|..+..+++|+.|
T Consensus 337 -----~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L 405 (606)
T 3t6q_A 337 -----KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS------LKTEAFKECPQLELL 405 (606)
T ss_dssp -----SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE------ECTTTTTTCTTCSEE
T ss_pred -----cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc------CCHHHhcCCccCCeE
Confidence 22222221 2788999999999888776 5557889999999999988853 345667888999999
Q ss_pred ecCCCcCccccccccccccccccccCccEEEeecccccccc-cCCccccCCccEEEEecCcCcee--eechhhhhhhccc
Q 002939 662 QLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKNL-LPSSASFRCLTKLSVWCCEQLIN--LVTSSAAKNLVQL 738 (864)
Q Consensus 662 ~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~l~~L 738 (864)
+++++ .++.. ........+++|++|++++| .+... +..+..+++|++|++++|. +.. ++....+..+++|
T Consensus 406 ~l~~n-~l~~~----~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L 478 (606)
T 3t6q_A 406 DLAFT-RLKVK----DAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRL 478 (606)
T ss_dssp ECTTC-CEECC----TTCCTTTTCTTCCEEECTTC-CCBTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTC
T ss_pred ECCCC-cCCCc----ccchhhhCcccCCEEECCCC-ccCCcCHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCc
Confidence 99985 34332 11222456899999999995 45444 4446789999999999864 443 2233567889999
Q ss_pred cEEEecCccchHHhhhccccccCcceeeccccCeeecCccccccccccCCceeecCccceeecccCCCccccccCcccCC
Q 002939 739 VTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFCSANYTFKFPSLCYLSVSACPKMKIFCRGVLSAP 818 (864)
Q Consensus 739 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~lp~~~~~~~ 818 (864)
++|++++|. ++.+++..+.+ +++|+.|++++ +.++.++.. .+.++++| .|++++|.-....|..+..++
T Consensus 479 ~~L~Ls~n~-l~~~~~~~~~~-------l~~L~~L~Ls~-N~l~~~~~~-~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~ 547 (606)
T 3t6q_A 479 EILVLSFCD-LSSIDQHAFTS-------LKMMNHVDLSH-NRLTSSSIE-ALSHLKGI-YLNLASNHISIILPSLLPILS 547 (606)
T ss_dssp CEEECTTSC-CCEECTTTTTT-------CTTCCEEECCS-SCCCGGGGG-GGTTCCSC-EEECCSSCCCCCCGGGHHHHH
T ss_pred cEEECCCCc-cCccChhhhcc-------ccCCCEEECCC-CccCcCChh-HhCccccc-EEECcCCcccccCHhhcccCC
Confidence 999999974 44444344443 89999999999 577776553 46688999 999999876555556667789
Q ss_pred ccceEeeCC-ccccccc
Q 002939 819 RLEKVRLND-QNYWDAD 834 (864)
Q Consensus 819 ~L~~l~l~~-~~~~~~~ 834 (864)
+|++|++++ .|..+.+
T Consensus 548 ~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 548 QQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TSSEEECTTCCEECSGG
T ss_pred CCCEEeCCCCCccccCC
Confidence 999999994 4554443
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.8e-35 Score=344.93 Aligned_cols=454 Identities=18% Similarity=0.121 Sum_probs=274.6
Q ss_pred hccceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccc-cCCcccccCCCccEEE
Q 002939 315 LKKCSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLL-SLPSSIRLLTDLRTLC 393 (864)
Q Consensus 315 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~~~~l~~L~~L~ 393 (864)
++++++|++++|.+....+...+++|++|++.++.... .+|. |.++++|++|++++|.+. .+|..++++++|++|+
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 253 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFST-GIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCS-CCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEE
T ss_pred CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCC-CCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEE
Confidence 45666666666666644444566677777776644332 2333 566777777777777766 4466677777777777
Q ss_pred ecCccccccccccccCcccEEeCCCCCCc-cCchhhccc-cccceecccccccccccChhhhhcCcccceeecccccccc
Q 002939 394 LDGCKLEDIRIIGELKELEILSLQGCDIE-HLPREIGQL-TQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW 471 (864)
Q Consensus 394 L~~~~l~~l~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 471 (864)
+++|.++.......+++|++|++++|.++ .+|..+..+ ++|++|++++|. +....+..++++++|++|++++|.+..
T Consensus 254 Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~ 332 (768)
T 3rgz_A 254 ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH-FYGAVPPFFGSCSLLESLALSSNNFSG 332 (768)
T ss_dssp CCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE-EEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred CCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc-CCCccchHHhcCCCccEEECCCCcccC
Confidence 77776654422226677777777777666 666666554 777777777775 444444446777777777777776542
Q ss_pred -----ccccCCcchhhhcCCCCccCCCCc---cCc-ccceecccccccccccccccccccCCCcceEEEeeCCCcccccc
Q 002939 472 -----EISNCSLLEEIVGKEGGVEADPSF---VFP-RLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSS 542 (864)
Q Consensus 472 -----~~~~~~~L~~L~~~~~~~~~~~~~---~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 542 (864)
.+..+++|+.|+++.+.+.+.... .++ +|+.|+++++.-....+.......+++|+.|++++|.....+|.
T Consensus 333 ~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 412 (768)
T 3rgz_A 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412 (768)
T ss_dssp ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG
T ss_pred cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH
Confidence 256677777777777665532222 223 66777776653322222222222255677777766644433333
Q ss_pred cccccccccccCcccccCCCccccccchhhhcCCcceeecccccccccccccccCccc--ccCccEEEeecCCccccchh
Q 002939 543 ELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHL--LNKLKVLAIENDKSEVLAPD 620 (864)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~--~~~L~~L~l~~~~~~~~~~~ 620 (864)
.+. .+++|++|++++|. +.+..|... +++|+.|++++|.+....+.
T Consensus 413 ~l~---------------------------~l~~L~~L~Ls~N~-----l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 460 (768)
T 3rgz_A 413 TLS---------------------------NCSELVSLHLSFNY-----LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460 (768)
T ss_dssp GGG---------------------------GCTTCCEEECCSSE-----EESCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred HHh---------------------------cCCCCCEEECcCCc-----ccCcccHHHhcCCCCCEEECCCCcccCcCCH
Confidence 222 25667777777664 233333322 56677777766666655555
Q ss_pred HHHHcccccEEEEEccccccccccccchhhhcccccccceeecCCCcCccccccccccccccccccCccEEEeecccccc
Q 002939 621 LLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLK 700 (864)
Q Consensus 621 ~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 700 (864)
.+..+++|+.|++++|.++ +.+|..+..+++|+.|++++|.-...+ +.....+++|++|++++|.-..
T Consensus 461 ~~~~l~~L~~L~L~~N~l~------~~~p~~l~~l~~L~~L~L~~N~l~~~~------p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 461 ELMYVKTLETLILDFNDLT------GEIPSGLSNCTNLNWISLSNNRLTGEI------PKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp GGGGCTTCCEEECCSSCCC------SCCCGGGGGCTTCCEEECCSSCCCSCC------CGGGGGCTTCCEEECCSSCCEE
T ss_pred HHcCCCCceEEEecCCccc------CcCCHHHhcCCCCCEEEccCCccCCcC------ChHHhcCCCCCEEECCCCcccC
Confidence 5666677777777766663 445556666677777777664322122 2223446667777777643333
Q ss_pred cccCCccccCCccEEEEecCcCceeeec----------------------------------------------------
Q 002939 701 NLLPSSASFRCLTKLSVWCCEQLINLVT---------------------------------------------------- 728 (864)
Q Consensus 701 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~---------------------------------------------------- 728 (864)
.+|..+..+++|+.|++++|+-...++.
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 4555556666777777665421111110
Q ss_pred ----------------hhhhhhhccccEEEecCccchHHhhhccccccCcceeeccccCeeecCcccccc-ccccCCcee
Q 002939 729 ----------------SSAAKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRLQSLT-TFCSANYTF 791 (864)
Q Consensus 729 ----------------~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~-~l~~~~~~~ 791 (864)
+..+..+++|+.|++++|.....+| ..++ .+++|+.|++++ +.++ .+| +.+.
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip-~~l~-------~l~~L~~L~Ls~-N~l~g~ip--~~l~ 677 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP-KEIG-------SMPYLFILNLGH-NDISGSIP--DEVG 677 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC-GGGG-------GCTTCCEEECCS-SCCCSCCC--GGGG
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCC-HHHh-------ccccCCEEeCcC-CccCCCCC--hHHh
Confidence 1123345778888888875544555 3333 378899999998 5666 555 3467
Q ss_pred ecCccceeecccCCCccccccCcccCCccceEeeCC
Q 002939 792 KFPSLCYLSVSACPKMKIFCRGVLSAPRLEKVRLND 827 (864)
Q Consensus 792 ~~~~L~~L~i~~C~~l~~lp~~~~~~~~L~~l~l~~ 827 (864)
++++|+.|++++|.-...+|..+..+++|++|++++
T Consensus 678 ~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcC
Confidence 889999999999887778888888889999999984
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.6e-34 Score=340.50 Aligned_cols=449 Identities=19% Similarity=0.152 Sum_probs=248.4
Q ss_pred ccceEEEeecCCccCCCCCC-cCCCceEEEecCCCCCCCCCCc-hhhcCCCCceEEEEeccccc-cCCccc-ccCCCccE
Q 002939 316 KKCSTISLHGNNISEIPQGW-ECPQLEFFYIFAPEDSPLKIPD-NIFMGMPKLKVLLFIRMRLL-SLPSSI-RLLTDLRT 391 (864)
Q Consensus 316 ~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~i~-~lp~~~-~~l~~L~~ 391 (864)
+.++.++++.+.+..+|..+ .+++|++|+++++... ..+|. ..+.++++|++|++++|.+. .+|..+ .++++|++
T Consensus 77 ~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 155 (768)
T 3rgz_A 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLS-GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155 (768)
T ss_dssp TTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEE-EEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred CcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCC-CcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCE
Confidence 34444444444443443443 5555555555553322 12222 12355555555555555554 223332 45555555
Q ss_pred EEecCcccccc--cc---ccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeeccc
Q 002939 392 LCLDGCKLEDI--RI---IGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMAT 466 (864)
Q Consensus 392 L~L~~~~l~~l--~~---~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 466 (864)
|++++|.+++. .. +.++++|++|++++|.+..... +..+++|++|++++|. +...++. ++++++|++|++++
T Consensus 156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~-l~~l~~L~~L~Ls~ 232 (768)
T 3rgz_A 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNN-FSTGIPF-LGDCSALQHLDISG 232 (768)
T ss_dssp EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSC-CCSCCCB-CTTCCSCCEEECCS
T ss_pred EECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCc-CCCCCcc-cccCCCCCEEECcC
Confidence 66555555543 11 4555556666665555542221 2455566666666654 3333333 55566666666665
Q ss_pred cccc----cccccCCcchhhhcCCCCccC-CCCccCcccceecccccccccccccccccccCCCcceEEEeeCCCccccc
Q 002939 467 CCIK----WEISNCSLLEEIVGKEGGVEA-DPSFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFS 541 (864)
Q Consensus 467 ~~~~----~~~~~~~~L~~L~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 541 (864)
|.+. ..+..+++|+.|+++.+.+.+ .+...+++|+.|+++++.-...++ ......+++|++|++++|......|
T Consensus 233 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip-~~~~~~~~~L~~L~Ls~n~l~~~~p 311 (768)
T 3rgz_A 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYGAVP 311 (768)
T ss_dssp SCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCC-CCSCTTCTTCSEEECCSSEEEECCC
T ss_pred CcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccC-HHHHhhcCcCCEEECcCCcCCCccc
Confidence 5543 245556666666665555443 222245556666665543211221 1112223556666665554322222
Q ss_pred ccccccccccccCcccccCCCccccccchhhhcCCcceeecccccccccccccccCcc---cccCccEEEeecCCccccc
Q 002939 542 SELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDH---LLNKLKVLAIENDKSEVLA 618 (864)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~---~~~~L~~L~l~~~~~~~~~ 618 (864)
..+ ..+++|++|++++|. ..+.+|.. .+++|++|++++|.+....
T Consensus 312 ~~~---------------------------~~l~~L~~L~L~~n~-----l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~ 359 (768)
T 3rgz_A 312 PFF---------------------------GSCSLLESLALSSNN-----FSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359 (768)
T ss_dssp GGG---------------------------GGCTTCCEEECCSSE-----EEEECCHHHHTTCTTCCEEECCSSEEEECC
T ss_pred hHH---------------------------hcCCCccEEECCCCc-----ccCcCCHHHHhcCCCCCEEeCcCCccCccc
Confidence 222 236777777777774 33344432 2567777777777776444
Q ss_pred hhHHHHcc-cccEEEEEccccccccccccchhhhccc--ccccceeecCCCcCccccccccccccccccccCccEEEeec
Q 002939 619 PDLLERFH-NLVNLELADGSYKELFSNEGQVEKLVGK--LARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISF 695 (864)
Q Consensus 619 ~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~l~~~~~~--l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~ 695 (864)
+..+..++ +|+.|++++|.+. +.+|..+.. +++|+.|++++|. ++.. .+.....+++|++|++++
T Consensus 360 p~~l~~l~~~L~~L~Ls~N~l~------~~~~~~~~~~~~~~L~~L~L~~n~-l~~~-----~p~~l~~l~~L~~L~Ls~ 427 (768)
T 3rgz_A 360 PESLTNLSASLLTLDLSSNNFS------GPILPNLCQNPKNTLQELYLQNNG-FTGK-----IPPTLSNCSELVSLHLSF 427 (768)
T ss_dssp CTTHHHHTTTCSEEECCSSEEE------EECCTTTTCSTTCCCCEEECCSSE-EEEE-----CCGGGGGCTTCCEEECCS
T ss_pred cHHHHhhhcCCcEEEccCCCcC------CCcChhhhhcccCCccEEECCCCc-cccc-----cCHHHhcCCCCCEEECcC
Confidence 44456665 7777777777763 334444444 6677777777753 2211 123345577788888887
Q ss_pred ccccccccCCccccCCccEEEEecCcCceeeechhhhhhhccccEEEecCccchHHhhhccccccCcceeeccccCeeec
Q 002939 696 CRNLKNLLPSSASFRCLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDL 775 (864)
Q Consensus 696 c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 775 (864)
|.--..++..+..+++|+.|++++| .+.... +..+..+++|++|++++|.....+| ..+. .+++|+.|++
T Consensus 428 N~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~-------~l~~L~~L~L 497 (768)
T 3rgz_A 428 NYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEI-PQELMYVKTLETLILDFNDLTGEIP-SGLS-------NCTNLNWISL 497 (768)
T ss_dssp SEEESCCCGGGGGCTTCCEEECCSS-CCCSCC-CGGGGGCTTCCEEECCSSCCCSCCC-GGGG-------GCTTCCEEEC
T ss_pred CcccCcccHHHhcCCCCCEEECCCC-cccCcC-CHHHcCCCCceEEEecCCcccCcCC-HHHh-------cCCCCCEEEc
Confidence 4322344455667778888888775 344332 3456677788888888765443443 3333 2678888888
Q ss_pred Ccccccc-ccccCCceeecCccceeecccCCCccccccCcccCCccceEeeC
Q 002939 776 NRLQSLT-TFCSANYTFKFPSLCYLSVSACPKMKIFCRGVLSAPRLEKVRLN 826 (864)
Q Consensus 776 ~~c~~L~-~l~~~~~~~~~~~L~~L~i~~C~~l~~lp~~~~~~~~L~~l~l~ 826 (864)
++| .++ .+| .++..+++|++|++++|+....+|..+..+++|+.|+++
T Consensus 498 ~~N-~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 498 SNN-RLTGEIP--KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp CSS-CCCSCCC--GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred cCC-ccCCcCC--hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 884 444 444 346677888888888887666778777778888888887
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.9e-34 Score=328.83 Aligned_cols=188 Identities=15% Similarity=0.103 Sum_probs=156.4
Q ss_pred ceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC-CcccccCCCccEEEecC
Q 002939 318 CSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDG 396 (864)
Q Consensus 318 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~ 396 (864)
-++++.++..++.+|..+. +.++.|+++++... .+++..|.++++|++|++++|.+..+ |..|+++++|++|+|++
T Consensus 14 ~~~~~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLP-NSTECLEFSFNVLP--TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTCCCS--EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEECCCCCcccCcCCCC-CcCcEEEccCCccC--cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 3467888888999998774 47999999986554 56667789999999999999999876 78899999999999999
Q ss_pred cccccc--ccccccCcccEEeCCCCCCccC-chhhccccccceecccccccccccChhhhhcCcccceeecccccccc--
Q 002939 397 CKLEDI--RIIGELKELEILSLQGCDIEHL-PREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW-- 471 (864)
Q Consensus 397 ~~l~~l--~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-- 471 (864)
|.++.+ ..++++++|++|++++|+++.+ |..++.+++|++|++++|. +..++...+..+++|++|++++|.+..
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 169 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccC
Confidence 999887 4699999999999999999987 6778999999999999997 777643335669999999999998753
Q ss_pred --ccccCCcch--hhhcCCCCccCCCCccC--cccceecccccc
Q 002939 472 --EISNCSLLE--EIVGKEGGVEADPSFVF--PRLTILQLCYLP 509 (864)
Q Consensus 472 --~~~~~~~L~--~L~~~~~~~~~~~~~~~--~~L~~L~l~~~~ 509 (864)
.++.+++|+ .|+++.+.+...+...| .+|+.|++.++.
T Consensus 170 ~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~ 213 (606)
T 3t6q_A 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213 (606)
T ss_dssp HHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS
T ss_pred hhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCch
Confidence 478888888 78888888776554433 468888887765
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-33 Score=326.77 Aligned_cols=470 Identities=17% Similarity=0.104 Sum_probs=324.2
Q ss_pred ceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC-CcccccCCCccEEEecC
Q 002939 318 CSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDG 396 (864)
Q Consensus 318 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~ 396 (864)
-++++.+++.++.+|..+. ++++.|+++++... .++...|.++++|++|++++|.+..+ |..|.++++|++|+|++
T Consensus 13 ~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLK--ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCceEccCCCcccCCCCCC-CCcCEEECCCCCcC--EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 3578889999999998775 79999999986554 57777789999999999999999987 66799999999999999
Q ss_pred cccccc--ccccccCcccEEeCCCCCCccCc-hhhccccccceecccccccccc--cChhhhhcCcccceeecccccccc
Q 002939 397 CKLEDI--RIIGELKELEILSLQGCDIEHLP-REIGQLTQLKLLDLSYCFELKV--IAPNVLSNLSQLEELYMATCCIKW 471 (864)
Q Consensus 397 ~~l~~l--~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~~~~ 471 (864)
|.++.+ ..++++++|++|++++|.++.+| ..++.+++|++|++++|. +.. +| ..++++++|++|++++|.+..
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp-~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLP-AYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCC-GGGGTCTTCCEEECCSSCCCE
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceech-HhHhhcCCCCEEEccCCccee
Confidence 999987 56999999999999999999776 679999999999999997 664 44 459999999999999998754
Q ss_pred ----ccccCCcch----hhhcCCCCccCCCCccC--cccceecccccccccccccccccccCCCcceEE-----------
Q 002939 472 ----EISNCSLLE----EIVGKEGGVEADPSFVF--PRLTILQLCYLPELRAFYPGIHTLECPMLTKLK----------- 530 (864)
Q Consensus 472 ----~~~~~~~L~----~L~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~----------- 530 (864)
.++.+.+|+ .++++.+.+...+...+ .+|+.|+++++...... .......++.++.+.
T Consensus 168 ~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 168 ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNI-MKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHH-HHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred cChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhH-HHHHhccccccccccccccccccCCc
Confidence 355566555 68888888776554443 37888888875321110 001112233333333
Q ss_pred ---------------------EeeCCCcccccccccccccccccCcccccCCCccccccchhhhcCCcceeecccccccc
Q 002939 531 ---------------------VSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDIT 589 (864)
Q Consensus 531 ---------------------l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 589 (864)
+..+..+......+..+..+.... +..... .... ....+++|++|++++|. +
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~-l~~~~~---~~l~-~l~~~~~L~~L~l~~n~-l- 319 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS-LAGVSI---KYLE-DVPKHFKWQSLSIIRCQ-L- 319 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEE-EESCCC---CCCC-CCCTTCCCSEEEEESCC-C-
T ss_pred ccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEE-ecCccc---hhhh-hccccccCCEEEccccc-C-
Confidence 222222222111111111110000 000000 0000 12235667777777774 1
Q ss_pred cccccccCcccccCccEEEeecCCccccchhHHHHcccccEEEEEccccccccccccchhhhcccccccceeecCCCcCc
Q 002939 590 KIWQGQFPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDL 669 (864)
Q Consensus 590 ~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l 669 (864)
+.+|...+++|++|++++|...... .+..+++|++|++++|.++.+ +.++..+..+++|+.|++++| .+
T Consensus 320 ----~~lp~~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~----~~~~~~~~~~~~L~~L~L~~n-~l 388 (606)
T 3vq2_A 320 ----KQFPTLDLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFS----GCCSYSDLGTNSLRHLDLSFN-GA 388 (606)
T ss_dssp ----SSCCCCCCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEE----EECCHHHHCCSCCCEEECCSC-SE
T ss_pred ----cccccCCCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCC----cchhhhhccCCcccEeECCCC-cc
Confidence 2233224667777777776433322 145677777777777777432 123556777888888888885 35
Q ss_pred cccccccccccccccccCccEEEeecccccccccC--CccccCCccEEEEecCcCceeeechhhhhhhccccEEEecCcc
Q 002939 670 KHLWLWEENSKLNMIFQNLETLDISFCRNLKNLLP--SSASFRCLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDGCS 747 (864)
Q Consensus 670 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 747 (864)
+.++ .....+++|++|++++| .+...++ .+..+++|+.|++++| .+.... +..+..+++|++|++++|.
T Consensus 389 ~~~~------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 389 IIMS------ANFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYT-NTKIDF-DGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp EEEC------CCCTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTS-CCEECC-TTTTTTCTTCCEEECTTCE
T ss_pred ccch------hhccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCC-CCCccc-hhhhcCCCCCCEEECCCCc
Confidence 5541 33456889999999994 5555543 5678899999999986 455543 4567889999999999986
Q ss_pred chHHhhhccccccCcceeeccccCeeecCccccccccccCCceeecCccceeecccCCCccccccCcccCCccceEeeCC
Q 002939 748 KITELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFCSANYTFKFPSLCYLSVSACPKMKIFCRGVLSAPRLEKVRLND 827 (864)
Q Consensus 748 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~lp~~~~~~~~L~~l~l~~ 827 (864)
......+..+.. +++|+.|++++| .++.++.. .+.++++|++|++++|+-....|..+..+++|++|++++
T Consensus 460 l~~~~~~~~~~~-------l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 530 (606)
T 3vq2_A 460 FKDNTLSNVFAN-------TTNLTFLDLSKC-QLEQISWG-VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530 (606)
T ss_dssp EGGGEECSCCTT-------CTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTT
T ss_pred CCCcchHHhhcc-------CCCCCEEECCCC-cCCccChh-hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCC
Confidence 554333344443 899999999995 77777653 467899999999999976666688888899999999995
Q ss_pred cc
Q 002939 828 QN 829 (864)
Q Consensus 828 ~~ 829 (864)
+.
T Consensus 531 N~ 532 (606)
T 3vq2_A 531 NR 532 (606)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-32 Score=322.90 Aligned_cols=490 Identities=18% Similarity=0.154 Sum_probs=273.2
Q ss_pred hhccceEEEeecCCccCCCCC-C-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCc-ccccCCCcc
Q 002939 314 LLKKCSTISLHGNNISEIPQG-W-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPS-SIRLLTDLR 390 (864)
Q Consensus 314 ~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~ 390 (864)
.++++++|++++|.++.++.. + .+++|++|+++++... .+++..|.++++|++|++++|.+..+|. .|+++++|+
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC--CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC--ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence 456888899998888887764 3 7888888888875443 4556667888888888888888888876 588888888
Q ss_pred EEEecCcccccc--ccccccCcccEEeCCCCCCccC-chhhccccccceecccccccccccChhhhh--cCcccceeecc
Q 002939 391 TLCLDGCKLEDI--RIIGELKELEILSLQGCDIEHL-PREIGQLTQLKLLDLSYCFELKVIAPNVLS--NLSQLEELYMA 465 (864)
Q Consensus 391 ~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~l~--~l~~L~~L~l~ 465 (864)
+|++++|.++.+ ..++++++|++|++++|.++.. |..+..+++|++|++++|. ++.+++..+. .+++|++|+++
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECT
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECC
Confidence 888888888877 3588888888888888887744 5567788888888888886 6776665444 45788888888
Q ss_pred cccccc----ccccC---------------------------CcchhhhcCCCCccCCCCccC-----cccceecccccc
Q 002939 466 TCCIKW----EISNC---------------------------SLLEEIVGKEGGVEADPSFVF-----PRLTILQLCYLP 509 (864)
Q Consensus 466 ~~~~~~----~~~~~---------------------------~~L~~L~~~~~~~~~~~~~~~-----~~L~~L~l~~~~ 509 (864)
+|.+.. .+..+ ++|+.|.++.+.+.......| ++|+.|+++++.
T Consensus 180 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp TCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred CCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence 776532 23333 344555555555544332222 237777777643
Q ss_pred cccccccccccccCCCcceEEEeeCCCccccccccccccccc---ccCc------------------------ccccCCC
Q 002939 510 ELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENN---EEGQ------------------------LIDVPVP 562 (864)
Q Consensus 510 ~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~---~~~~------------------------~~~~~~~ 562 (864)
+...... ....+++|+.|++++|......+..+..+..+. .... +..+.+.
T Consensus 260 -l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~ 337 (680)
T 1ziw_A 260 -LNVVGND-SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337 (680)
T ss_dssp -CCEECTT-TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECC
T ss_pred -cCccCcc-cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECC
Confidence 3333221 234567777777776644333332222211111 1100 0000000
Q ss_pred cc--c-cccchhhhcCCcceeecccccc-cccccccccCcccccCccEEEeecCCccccchhHHHHcccccEEEEEcccc
Q 002939 563 AQ--Q-SLFLVEKVLPNLEELRLSNKKD-ITKIWQGQFPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSY 638 (864)
Q Consensus 563 ~~--~-~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 638 (864)
.. . ........+++|++|++++|.. ........+.....++|+.|++++|.+...++..+..+++|+.|++++|.+
T Consensus 338 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 417 (680)
T 1ziw_A 338 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417 (680)
T ss_dssp SCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcC
Confidence 00 0 0011122355556666555521 000000111111124677777777777777776677788888888888777
Q ss_pred ccccccccchh-hhcccccccceeecCCCcCccccccccccccccccccCccEEEeecccc--cccccCCccccCCccEE
Q 002939 639 KELFSNEGQVE-KLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRN--LKNLLPSSASFRCLTKL 715 (864)
Q Consensus 639 ~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~--l~~~~~~~~~~~~L~~L 715 (864)
. +.+| ..+..+++|+.|++++|. +..+ .......+++|+.|++++|.- +...+..+..+++|+.|
T Consensus 418 ~------~~~~~~~~~~l~~L~~L~Ls~n~-l~~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 418 G------QELTGQEWRGLENIFEIYLSYNK-YLQL-----TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp E------EECCSGGGTTCTTCCEEECCSCS-EEEC-----CTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred c------cccCcccccCcccccEEecCCCC-ccee-----ChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence 4 2222 346677777777777743 3332 112233455666666665321 12333444555666666
Q ss_pred EEecCcCceeeechhhhhhhccccEEEecCccchHHhhhccccc-cCcceeeccccCeeecCccccccccccCCceeecC
Q 002939 716 SVWCCEQLINLVTSSAAKNLVQLVTMKVDGCSKITELVVAIEAD-EANEEIFFPKLESLDLNRLQSLTTFCSANYTFKFP 794 (864)
Q Consensus 716 ~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~ 794 (864)
++++| ++..++ +..+..+++|++|++++|. ++.++.....+ .......+++|+.|++++ +.++.+|.. .+.+++
T Consensus 486 ~Ls~N-~l~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~-~~~~l~ 560 (680)
T 1ziw_A 486 DLSNN-NIANIN-DDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVE-VFKDLF 560 (680)
T ss_dssp ECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCCCCTT-TTTTCT
T ss_pred ECCCC-CCCcCC-hhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCC-CCCCCCCHH-Hccccc
Confidence 66653 444442 3344555666666666642 33322111000 000011245555555555 345555432 234455
Q ss_pred ccceeecccCCCccccccC-cccCCccceEeeC
Q 002939 795 SLCYLSVSACPKMKIFCRG-VLSAPRLEKVRLN 826 (864)
Q Consensus 795 ~L~~L~i~~C~~l~~lp~~-~~~~~~L~~l~l~ 826 (864)
+|++|+++++ .++.+|.. +..+++|+.|+++
T Consensus 561 ~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~ 592 (680)
T 1ziw_A 561 ELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQ 592 (680)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred CcceeECCCC-CCCcCCHhHhCCCCCCCEEECC
Confidence 5555555443 34444433 2344555555555
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=317.80 Aligned_cols=449 Identities=20% Similarity=0.184 Sum_probs=325.8
Q ss_pred hhhccceEEEeecCCccCCCCC--CcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCC-cccccCCCc
Q 002939 313 YLLKKCSTISLHGNNISEIPQG--WECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLP-SSIRLLTDL 389 (864)
Q Consensus 313 ~~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L 389 (864)
..+.++++|++++|.++.++.. ..+++|++|+++++... .++...|.++++|++|++++|.+..+| ..|+++++|
T Consensus 25 ~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~--~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC--ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 3557899999999999987653 38999999999986443 577778899999999999999999775 679999999
Q ss_pred cEEEecCccccccc--cccccCcccEEeCCCCCCcc--CchhhccccccceecccccccccccChhhhhcCccc----ce
Q 002939 390 RTLCLDGCKLEDIR--IIGELKELEILSLQGCDIEH--LPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQL----EE 461 (864)
Q Consensus 390 ~~L~L~~~~l~~l~--~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L----~~ 461 (864)
++|++++|.++.++ .++++++|++|++++|.++. +|..++++++|++|++++|. +..+++..++.+++| +.
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLS 181 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCE
T ss_pred ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhh
Confidence 99999999999884 49999999999999999885 79999999999999999996 888877778888888 88
Q ss_pred eecccccccc----ccccCCcchhhhcCCCCccC-------------------------------CCCccCcc-----cc
Q 002939 462 LYMATCCIKW----EISNCSLLEEIVGKEGGVEA-------------------------------DPSFVFPR-----LT 501 (864)
Q Consensus 462 L~l~~~~~~~----~~~~~~~L~~L~~~~~~~~~-------------------------------~~~~~~~~-----L~ 501 (864)
|++++|.+.. .+..+ +|+.|.++.+.... .....+.. ++
T Consensus 182 L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 182 LDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp EECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred cccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence 9999887643 23333 67777665542111 00111111 12
Q ss_pred eecccccccccccccccccccCCCcceEEEeeCCCcccccccccccccccccCcccccCCCccccccchhhhcCCcceee
Q 002939 502 ILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELR 581 (864)
Q Consensus 502 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 581 (864)
.+++.++..+..... .....+++|+.|++++|. +..+|..+ ..+ +|++|+
T Consensus 261 ~l~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~-l~~l~~~~---------------------------~~~-~L~~L~ 310 (570)
T 2z63_A 261 EFRLAYLDYYLDDII-DLFNCLTNVSSFSLVSVT-IERVKDFS---------------------------YNF-GWQHLE 310 (570)
T ss_dssp EEEEEETTEEESCST-TTTGGGTTCSEEEEESCE-ECSCCBCC---------------------------SCC-CCSEEE
T ss_pred hhhhhcchhhhhhch-hhhcCcCcccEEEecCcc-chhhhhhh---------------------------ccC-CccEEe
Confidence 222222211111111 112345667777776653 22222211 125 889999
Q ss_pred cccccccccccccccCcccccCccEEEeecCCccccchhHHHHcccccEEEEEccccccccccccchhhhccccccccee
Q 002939 582 LSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCL 661 (864)
Q Consensus 582 l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L 661 (864)
+++|. + ..+|...+++|++|++++|......+. ..+++|++|++++|.++.. +..+..+..+++|+.|
T Consensus 311 l~~n~-~-----~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~~~L~~L 378 (570)
T 2z63_A 311 LVNCK-F-----GQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFK----GCCSQSDFGTTSLKYL 378 (570)
T ss_dssp EESCB-C-----SSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEE----EEEEHHHHTCSCCCEE
T ss_pred eccCc-c-----cccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcc----ccccccccccCccCEE
Confidence 99884 2 245555688999999999887766554 6789999999999988543 2235667789999999
Q ss_pred ecCCCcCccccccccccccccccccCccEEEeecccccccccC--CccccCCccEEEEecCcCceeeechhhhhhhcccc
Q 002939 662 QLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKNLLP--SSASFRCLTKLSVWCCEQLINLVTSSAAKNLVQLV 739 (864)
Q Consensus 662 ~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 739 (864)
++++| .+..++ .....+++|++|++++| .+...++ .+..+++|++|++++| .+.... +..+..+++|+
T Consensus 379 ~l~~n-~l~~~~------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~ 448 (570)
T 2z63_A 379 DLSFN-GVITMS------SNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAF-NGIFNGLSSLE 448 (570)
T ss_dssp ECCSC-SEEEEE------EEEETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTS-CCEECC-TTTTTTCTTCC
T ss_pred ECCCC-cccccc------ccccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCC-cccccc-hhhhhcCCcCc
Confidence 99995 454441 11456899999999995 5555543 4578999999999987 455543 46678899999
Q ss_pred EEEecCccchH-HhhhccccccCcceeeccccCeeecCccccccccccCCceeecCccceeecccCCCccccc-cCcccC
Q 002939 740 TMKVDGCSKIT-ELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFCSANYTFKFPSLCYLSVSACPKMKIFC-RGVLSA 817 (864)
Q Consensus 740 ~L~l~~c~~l~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~lp-~~~~~~ 817 (864)
+|++++|.... .+| ..+.+ +++|+.|++++| .++.+++. .+.++++|++|++++|. ++.+| ..+..+
T Consensus 449 ~L~l~~n~l~~~~~p-~~~~~-------l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 517 (570)
T 2z63_A 449 VLKMAGNSFQENFLP-DIFTE-------LRNLTFLDLSQC-QLEQLSPT-AFNSLSSLQVLNMASNQ-LKSVPDGIFDRL 517 (570)
T ss_dssp EEECTTCEEGGGEEC-SCCTT-------CTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSC-CSCCCTTTTTTC
T ss_pred EEECcCCcCccccch-hhhhc-------ccCCCEEECCCC-ccccCChh-hhhcccCCCEEeCCCCc-CCCCCHHHhhcc
Confidence 99999987542 333 44443 899999999995 67777543 46689999999999986 55555 456789
Q ss_pred CccceEeeCCc
Q 002939 818 PRLEKVRLNDQ 828 (864)
Q Consensus 818 ~~L~~l~l~~~ 828 (864)
++|++|+++++
T Consensus 518 ~~L~~L~l~~N 528 (570)
T 2z63_A 518 TSLQKIWLHTN 528 (570)
T ss_dssp TTCCEEECCSS
T ss_pred cCCcEEEecCC
Confidence 99999999943
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.6e-32 Score=314.33 Aligned_cols=471 Identities=17% Similarity=0.165 Sum_probs=287.7
Q ss_pred ccceEEEeecCCccCCCC-CC-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcc-cccCCCccEE
Q 002939 316 KKCSTISLHGNNISEIPQ-GW-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSS-IRLLTDLRTL 392 (864)
Q Consensus 316 ~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-~~~l~~L~~L 392 (864)
+++++|++++|.++.+++ .+ .+++|++|+++++... .++...|.++++|++|++++|.+..+|.. |+++++|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN--TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC--ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 456666666666654432 22 5566666666654332 34444455666666666666666655443 5666666666
Q ss_pred EecCcccccc---ccccccCcccEEeCCCCC-CccCc-hhhccccccceecccccccccccChhhhhcCcccceeecccc
Q 002939 393 CLDGCKLEDI---RIIGELKELEILSLQGCD-IEHLP-REIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATC 467 (864)
Q Consensus 393 ~L~~~~l~~l---~~~~~l~~L~~L~l~~~~-i~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 467 (864)
++++|.++.+ ..++++++|++|++++|. +..+| ..+..+++|++|++++|. +....+..++++++|++|++++|
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECS
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccccChhhhhccccCceEecccC
Confidence 6666665543 345566666666666664 44443 345566666666666664 44444444556666666666555
Q ss_pred cccc----ccccCCcchhhhcCCCCccCCC------CccCcccceeccccccccccccc---ccccccCCCcceEEEeeC
Q 002939 468 CIKW----EISNCSLLEEIVGKEGGVEADP------SFVFPRLTILQLCYLPELRAFYP---GIHTLECPMLTKLKVSCC 534 (864)
Q Consensus 468 ~~~~----~~~~~~~L~~L~~~~~~~~~~~------~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~~~~L~~L~l~~c 534 (864)
.+.. .+..+++|+.|+++.+.+.+.+ ...+++|+.|++.++. +.+... ......+++|+.+++.+|
T Consensus 183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV-LTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE-EEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc-cchhHHHHHHHHhhhhccccccccccc
Confidence 4321 1234556666666655554421 1123455555555432 111000 001123455666666655
Q ss_pred CCcccccccccccccccccCcccccCCCccccccchhhhcCCcceeecccccccccc-cccccCc--ccccCccEEEeec
Q 002939 535 DKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKI-WQGQFPD--HLLNKLKVLAIEN 611 (864)
Q Consensus 535 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~p~--~~~~~L~~L~l~~ 611 (864)
......... . ........+++|+.|.+.++. +... ....++. ...++|++|++++
T Consensus 262 ~~~~~~~~~--------------~-------~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~l~~~~~~~~~L~~L~l~~ 319 (549)
T 2z81_A 262 TLNGLGDFN--------------P-------SESDVVSELGKVETVTIRRLH-IPQFYLFYDLSTVYSLLEKVKRITVEN 319 (549)
T ss_dssp EEECCSCCC--------------C-------CTTTCCCCCTTCCEEEEESCB-CSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred ccccccccc--------------c-------cchhhhhhhcccccccccccc-cchhhhcccchhhhhhcccceEEEecc
Confidence 321110000 0 000011236788888888774 2211 0111111 1257899999999
Q ss_pred CCccccchhHHHHcccccEEEEEccccccccccccchh---hhcccccccceeecCCCcCccccccccccccccccccCc
Q 002939 612 DKSEVLAPDLLERFHNLVNLELADGSYKELFSNEGQVE---KLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNL 688 (864)
Q Consensus 612 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~---~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L 688 (864)
|.+..+|...++.+++|+.|++++|.+. +.+| ..++.+++|+.|++++| .++.++.. ......+++|
T Consensus 320 n~l~~ip~~~~~~l~~L~~L~Ls~N~l~------~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~---~~~~~~l~~L 389 (549)
T 2z81_A 320 SKVFLVPCSFSQHLKSLEFLDLSENLMV------EEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKT---GEILLTLKNL 389 (549)
T ss_dssp SCCCCCCHHHHHHCTTCCEEECCSSCCC------HHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHH---HHHGGGCTTC
T ss_pred CccccCCHHHHhcCccccEEEccCCccc------cccccchhhhhccccCcEEEccCC-cccccccc---hhhhhcCCCC
Confidence 9999999887789999999999999995 3332 33678999999999994 56554110 1224568999
Q ss_pred cEEEeecccccccccCCccccCCccEEEEecCcCceeeechhhhhhhccccEEEecCccchHHhhhccccccCcceeecc
Q 002939 689 ETLDISFCRNLKNLLPSSASFRCLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFFP 768 (864)
Q Consensus 689 ~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~ 768 (864)
++|++++| .++.+|.....+++|++|++++| .+..++. ...++|++|++++|. ++.++ . .++
T Consensus 390 ~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N-~l~~l~~----~~~~~L~~L~Ls~N~-l~~~~----~-------~l~ 451 (549)
T 2z81_A 390 TSLDISRN-TFHPMPDSCQWPEKMRFLNLSST-GIRVVKT----CIPQTLEVLDVSNNN-LDSFS----L-------FLP 451 (549)
T ss_dssp CEEECTTC-CCCCCCSCCCCCTTCCEEECTTS-CCSCCCT----TSCTTCSEEECCSSC-CSCCC----C-------CCT
T ss_pred CEEECCCC-CCccCChhhcccccccEEECCCC-Ccccccc----hhcCCceEEECCCCC-hhhhc----c-------cCC
Confidence 99999994 78888888888999999999986 5666532 113689999999974 33332 1 489
Q ss_pred ccCeeecCccccccccccCCceeecCccceeecccCCCccccc-cCcccCCccceEeeCC-cccccccHHHHHHHHHhh
Q 002939 769 KLESLDLNRLQSLTTFCSANYTFKFPSLCYLSVSACPKMKIFC-RGVLSAPRLEKVRLND-QNYWDADLNTIIQQSYYE 845 (864)
Q Consensus 769 ~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~lp-~~~~~~~~L~~l~l~~-~~~~~~~~~~~l~~~~~~ 845 (864)
+|+.|++++ ++++.+|. ...+++|++|++++|. ++.+| ..+..+++|++|++++ .|..+......++++...
T Consensus 452 ~L~~L~Ls~-N~l~~ip~---~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~ 525 (549)
T 2z81_A 452 RLQELYISR-NKLKTLPD---ASLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 525 (549)
T ss_dssp TCCEEECCS-SCCSSCCC---GGGCTTCCEEECCSSC-CCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred hhcEEECCC-CccCcCCC---cccCccCCEEecCCCc-cCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHh
Confidence 999999999 58998884 2468999999999986 55554 4577899999999994 455444334455555444
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.7e-32 Score=317.99 Aligned_cols=480 Identities=18% Similarity=0.144 Sum_probs=308.4
Q ss_pred eEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC-CcccccCCCccEEEecCc
Q 002939 319 STISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDGC 397 (864)
Q Consensus 319 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~ 397 (864)
+.++.+++.++.+|..+. ++++.|+++++... .++...|.++++|++|++++|.+..+ |..|+++++|++|++++|
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQLR--RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCCC--CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCCCC--CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 468888999999998765 79999999986544 57777789999999999999999977 777999999999999999
Q ss_pred cccccc--cccccCcccEEeCCCCCCccCc-hhhccccccceecccccccccccChhhhhcCcccceeecccccccc---
Q 002939 398 KLEDIR--IIGELKELEILSLQGCDIEHLP-REIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW--- 471 (864)
Q Consensus 398 ~l~~l~--~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~--- 471 (864)
.++.++ .++++++|++|++++|+++.+| ..++.+++|++|++++|. +...++..++++++|++|++++|.+..
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccCH
Confidence 999984 4999999999999999999876 679999999999999997 777777778999999999999998654
Q ss_pred -c--cccCCcchhhhcCCCCccCCCCcc---Ccccceecccccc--------------------------cccccccccc
Q 002939 472 -E--ISNCSLLEEIVGKEGGVEADPSFV---FPRLTILQLCYLP--------------------------ELRAFYPGIH 519 (864)
Q Consensus 472 -~--~~~~~~L~~L~~~~~~~~~~~~~~---~~~L~~L~l~~~~--------------------------~l~~~~~~~~ 519 (864)
. ...+++|+.|+++.+.+...+... +++|+.|.+.++. .+....+. .
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~-~ 241 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT-T 241 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT-T
T ss_pred HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh-H
Confidence 1 335689999999999877654432 3444444443321 11111111 1
Q ss_pred cccC--CCcceEEEeeCCCcccccccccccccc---cccCcccccCCCccccccchhhhcCCcceeeccccccccccccc
Q 002939 520 TLEC--PMLTKLKVSCCDKLKCFSSELYSLHEN---NEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQG 594 (864)
Q Consensus 520 ~~~~--~~L~~L~l~~c~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 594 (864)
...+ ++|+.|++++|..-...+..+..+..+ ...+.-. ..........+++|+.|++++|.........
T Consensus 242 ~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ 315 (680)
T 1ziw_A 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI------QHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315 (680)
T ss_dssp TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB------SEECTTTTTTCTTCCEEECTTCBCCC-----
T ss_pred hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc------CccChhhhcCCCCccEEeccchhhhcccccc
Confidence 1112 347777776664332222222221111 1111000 0000112223556666666554211000000
Q ss_pred ccC------cccccCccEEEeecCCccccchhHHHHcccccEEEEEccccc--ccccc--------------------cc
Q 002939 595 QFP------DHLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSYK--ELFSN--------------------EG 646 (864)
Q Consensus 595 ~~p------~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~~~~~--------------------~~ 646 (864)
.+| ...+++|++|++++|.+...++..+..+++|++|++++|.+. .++.. .+
T Consensus 316 ~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~ 395 (680)
T 1ziw_A 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395 (680)
T ss_dssp -CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCE
T ss_pred cccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCe
Confidence 111 112567777888777777777766777777777777765421 11100 11
Q ss_pred chhhhcccccccceeecCCCcCccccccccccccccccccCccEEEeeccccccccc-CCccccCCccEEEEecCcCcee
Q 002939 647 QVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKNLL-PSSASFRCLTKLSVWCCEQLIN 725 (864)
Q Consensus 647 ~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~ 725 (864)
..|..+..+++|+.|+++++.--..+ .......+++|++|++++|. +..+. ..+..+++|+.|++++|. +..
T Consensus 396 ~~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~-l~~ 468 (680)
T 1ziw_A 396 IESDAFSWLGHLEVLDLGLNEIGQEL-----TGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVA-LKN 468 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCEEEC-----CSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSC-CBC
T ss_pred EChhhhhCCCCCCEEeCCCCcCcccc-----CcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhcccc-ccc
Confidence 12334555666666666663211111 11223446667777777643 33332 234556777777776642 221
Q ss_pred e-echhhhhhhccccEEEecCccchHHhhhccccccCcceeeccccCeeecCccccccccccCC-------ceeecCccc
Q 002939 726 L-VTSSAAKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFCSAN-------YTFKFPSLC 797 (864)
Q Consensus 726 ~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~-------~~~~~~~L~ 797 (864)
+ ..+..+..+++|+.|++++| .++.++...+.+ +++|+.|++++ +.++.++... .+.++++|+
T Consensus 469 ~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~-------l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~~~~l~~L~ 539 (680)
T 1ziw_A 469 VDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEG-------LEKLEILDLQH-NNLARLWKHANPGGPIYFLKGLSHLH 539 (680)
T ss_dssp TTCSSCTTTTCTTCCEEECCSS-CCCCCCTTTTTT-------CTTCCEEECCS-SCCGGGGSTTSTTSCCCTTTTCTTCC
T ss_pred cccCCcccccCCCCCEEECCCC-CCCcCChhhhcc-------ccccCEEeCCC-CCccccchhhccCCcchhhcCCCCCC
Confidence 1 12345677888888888885 455555444443 78999999999 6777764321 256789999
Q ss_pred eeecccCCCccccccC-cccCCccceEeeC
Q 002939 798 YLSVSACPKMKIFCRG-VLSAPRLEKVRLN 826 (864)
Q Consensus 798 ~L~i~~C~~l~~lp~~-~~~~~~L~~l~l~ 826 (864)
+|++++|. ++.+|.. +..+++|++|+++
T Consensus 540 ~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls 568 (680)
T 1ziw_A 540 ILNLESNG-FDEIPVEVFKDLFELKIIDLG 568 (680)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred EEECCCCC-CCCCCHHHcccccCcceeECC
Confidence 99998875 6678764 6779999999998
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4e-32 Score=325.11 Aligned_cols=479 Identities=19% Similarity=0.185 Sum_probs=291.7
Q ss_pred hhccceEEEeecCCccCCCC-CC-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC-CcccccCCCcc
Q 002939 314 LLKKCSTISLHGNNISEIPQ-GW-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLR 390 (864)
Q Consensus 314 ~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~ 390 (864)
.++++++|++++|.++.+++ .+ .+++|++|+++++.. ...+++..|.++++|++|+|++|.+..+ |..|+++++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~-~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC-ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 67899999999999997654 33 899999999998533 4467677789999999999999999976 88999999999
Q ss_pred EEEecCccccc--ccc--ccccCcccEEeCCCCCCccC--chhhccccccceecccccccccccChhhhhcC--ccccee
Q 002939 391 TLCLDGCKLED--IRI--IGELKELEILSLQGCDIEHL--PREIGQLTQLKLLDLSYCFELKVIAPNVLSNL--SQLEEL 462 (864)
Q Consensus 391 ~L~L~~~~l~~--l~~--~~~l~~L~~L~l~~~~i~~l--p~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l--~~L~~L 462 (864)
+|+|++|.+++ +.. ++++++|++|++++|.++.+ +..++++++|++|++++|. +....+..+..+ ++|+.|
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGGGHHHHHCSSCCC
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHHHcccccCCccceE
Confidence 99999999986 333 89999999999999999865 4579999999999999997 766666667777 899999
Q ss_pred ecccccccc----ccccCCc------chhhhcCCCCccCCCCccC------cccceecccccc--------ccccccccc
Q 002939 463 YMATCCIKW----EISNCSL------LEEIVGKEGGVEADPSFVF------PRLTILQLCYLP--------ELRAFYPGI 518 (864)
Q Consensus 463 ~l~~~~~~~----~~~~~~~------L~~L~~~~~~~~~~~~~~~------~~L~~L~l~~~~--------~l~~~~~~~ 518 (864)
++++|.+.. .+..|.+ |+.|+++.+.+.......+ .++..+.+.... .+.......
T Consensus 180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~ 259 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259 (844)
T ss_dssp EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence 999988654 3455554 8888888886554322211 123333332100 000000000
Q ss_pred -ccccCCCcceEEEeeCCCccccccccccccccc---ccCc-ccccCCCccccccchhhhcCCcceeecccccccccccc
Q 002939 519 -HTLECPMLTKLKVSCCDKLKCFSSELYSLHENN---EEGQ-LIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQ 593 (864)
Q Consensus 519 -~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 593 (864)
.....++|+.|++++|......+..+..+..+. ...+ +.. ........+++|++|++++|. +.....
T Consensus 260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-------~~~~~~~~l~~L~~L~Ls~N~-l~~~~~ 331 (844)
T 3j0a_A 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-------IADEAFYGLDNLQVLNLSYNL-LGELYS 331 (844)
T ss_dssp TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE-------ECTTTTTTCSSCCEEEEESCC-CSCCCS
T ss_pred hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC-------CChHHhcCCCCCCEEECCCCC-CCccCH
Confidence 000123455555544432222111111111000 0000 000 000111235666666666663 221111
Q ss_pred cccCcccccCccEEEeecCCccccchhHHHHcccccEEEEEccccccccccccchhhhcccccccceeecCCCcCccccc
Q 002939 594 GQFPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLW 673 (864)
Q Consensus 594 ~~~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~ 673 (864)
..+. .+++|+.|++++|.+...++..+..+++|+.|++++|.++.++ .+++|+.|++++ +.++.++
T Consensus 332 ~~~~--~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----------~~~~L~~L~l~~-N~l~~l~ 397 (844)
T 3j0a_A 332 SNFY--GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----------FIPSIPDIFLSG-NKLVTLP 397 (844)
T ss_dssp CSCS--SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----------SCCSCSEEEEES-CCCCCCC
T ss_pred HHhc--CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-----------CCCCcchhccCC-CCccccc
Confidence 1111 1556666666666666666555566666666666666664321 144455555444 2222221
Q ss_pred ccc----------------ccccccccccCccEEEeecccccccccCC--ccccCCccEEEEecCcCceeee----chhh
Q 002939 674 LWE----------------ENSKLNMIFQNLETLDISFCRNLKNLLPS--SASFRCLTKLSVWCCEQLINLV----TSSA 731 (864)
Q Consensus 674 ~~~----------------~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~~L~~L~l~~c~~l~~~~----~~~~ 731 (864)
... ........+++|+.|++++ +.++..++. ...+++|+.|+++++ .+.... .+..
T Consensus 398 ~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~ 475 (844)
T 3j0a_A 398 KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ-NRFSSCSGDQTPSENPSLEQLFLGEN-MLQLAWETELCWDV 475 (844)
T ss_dssp CCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEES-CCCCCCCSSSSSCSCTTCCBCEEESC-CCSSSCCSCCCSSC
T ss_pred ccccccceeecccCccccCchhhhhhcCCccceeeCCC-CcccccccccccccCCccccccCCCC-ccccccccccchhh
Confidence 100 0011122567778888877 455544332 345677888888764 343221 1234
Q ss_pred hhhhccccEEEecCccchHHhhhccccccCcceeeccccCeeecCccccccccccCCceeecCccceeecccCCCccccc
Q 002939 732 AKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFCSANYTFKFPSLCYLSVSACPKMKIFC 811 (864)
Q Consensus 732 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~lp 811 (864)
+..+++|++|++++| .++.+++..+.+ +++|+.|+|++ ++++.++...+. ++|+.|+++++.-....|
T Consensus 476 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~-------l~~L~~L~Ls~-N~l~~l~~~~~~---~~L~~L~Ls~N~l~~~~~ 543 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHN-YLNSLPPGVFSH-------LTALRGLSLNS-NRLTVLSHNDLP---ANLEILDISRNQLLAPNP 543 (844)
T ss_dssp SSCBCCEECCCCCHH-HHTTCCTTSSSS-------CCSCSEEEEES-CCCSSCCCCCCC---SCCCEEEEEEECCCCCCS
T ss_pred hcCcccccEEECCCC-cccccChhHccc-------hhhhheeECCC-CCCCccChhhhh---ccccEEECCCCcCCCCCh
Confidence 566788888888885 566666554443 78888888888 678888765332 788888888876444344
Q ss_pred cCcccCCccceEeeCC-cccccc
Q 002939 812 RGVLSAPRLEKVRLND-QNYWDA 833 (864)
Q Consensus 812 ~~~~~~~~L~~l~l~~-~~~~~~ 833 (864)
.. +++|+.|++++ .|.++.
T Consensus 544 ~~---~~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 544 DV---FVSLSVLDITHNKFICEC 563 (844)
T ss_dssp CC---CSSCCEEEEEEECCCCSS
T ss_pred hH---hCCcCEEEecCCCccccc
Confidence 32 45788888883 454444
No 12
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.9e-33 Score=314.33 Aligned_cols=278 Identities=13% Similarity=0.126 Sum_probs=200.5
Q ss_pred chHHHHHHHhcCC---CccEEEEEcCCCCcHHHHHHHHHH--HhhhccCCCeEEEEEccCCC--ChHHHHHHHHHHhCCc
Q 002939 2 STLKNVQNALLDP---DISIIGMYGMGGVGKTTLVKEVAR--RAKKDMLFDEVVFAEVSETP--DIGKIQGELADQLGMK 74 (864)
Q Consensus 2 ~~~~~i~~~l~~~---~~~vi~i~G~~G~GKTtLa~~~~~--~~~~~~~f~~~~~v~~~~~~--~~~~~~~~i~~~l~~~ 74 (864)
.++++|.++|.++ +.++|+|+||||+||||||+++|+ +..++.+|+.++||+++..+ ++..+++.|+.+++..
T Consensus 135 ~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~ 214 (549)
T 2a5y_B 135 YHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSE 214 (549)
T ss_dssp HHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcC
Confidence 4678889998643 679999999999999999999999 56777889999999999875 7999999999999754
Q ss_pred cccchhhhhccccccCCCChhhHHHHHHHHHhcCC-eEEEEEcCCCchhccccccCCCCCCCCCcEEEEEeCChHHHhhc
Q 002939 75 FSQGEIADQRGMKFSQESDVPGRARKLYARLQKEN-KILVILDNIWEDLDLEKVGVPSGNDWRGCKVLLTARDRHVLGSI 153 (864)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~~~~ 153 (864)
..... .......+.......+.+.|. ++ |+||||||||+.+++ .+.. .+||+||||||++.++..+
T Consensus 215 ~~~~~------~~~~~~~~~~~l~~~l~~~L~-~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 215 DDLLN------FPSVEHVTSVVLKRMICNALI-DRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp SCCTT------CCCCTTCCHHHHHHHHHHHHT-TSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred ccccc------ccccccccHHHHHHHHHHHHc-CCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 21000 000012234456778888886 64 999999999998765 2211 1589999999999998877
Q ss_pred C--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHHHHHhccCCChhHHHHHHHH-hcC--
Q 002939 154 G--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTLAKALRNKSCVSAWKDALRQ-LKR-- 228 (864)
Q Consensus 154 ~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~~~~l~~~~~~~~w~~~l~~-l~~-- 228 (864)
+ ...|++++|+.++||+||.+++......++..+++.+|+++|+|+|||++++|+.++.+ .. .|...+.. +..
T Consensus 282 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~l~~~~ 359 (549)
T 2a5y_B 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNKLESRG 359 (549)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHHHHHHC
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHHhhccc
Confidence 5 36799999999999999999985443346778899999999999999999999998776 22 23222222 111
Q ss_pred -C--------CCCCch----HHHH-------------Hhhhccch------HHH-------------HHHHHHhHHHHHH
Q 002939 229 -P--------SPGNFD----GVLA-------------KTLEGIDT------VEE-------------ARDKVCTSVQELK 263 (864)
Q Consensus 229 -~--------~~~~~~----~~l~-------------~~~~~~~~------~~~-------------~~~~~~~~~~~L~ 263 (864)
. ....+. .+|+ +.|++... ..+ .++.+ +++++|+
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~~~~~~~~~~-~~l~~L~ 438 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVA-DRLKRLS 438 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC-------CCCTHHHH-HHHHHTT
T ss_pred HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCCCCCCHHHHH-HHHHHHH
Confidence 0 011111 1322 33322111 000 12333 3999999
Q ss_pred Hhccccccc--CCceEEecHHHHHHHHHHhcccc
Q 002939 264 DACLLLDGE--NSDWFSMHDVVRDVAISIASRDR 295 (864)
Q Consensus 264 ~~~l~~~~~--~~~~~~mh~li~~~~~~~~~~e~ 295 (864)
++||++... ...+|+|||++|++|+.++.+++
T Consensus 439 ~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 439 KRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 999998654 34589999999999999887764
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.8e-31 Score=299.64 Aligned_cols=457 Identities=16% Similarity=0.148 Sum_probs=329.8
Q ss_pred eEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC-CcccccCCCccEEEecCc
Q 002939 319 STISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDGC 397 (864)
Q Consensus 319 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~ 397 (864)
+++++++|.++.+|..+. ++++.|+++++... .++...|.++++|++|++++|.+..+ |..|+++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYIS--ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCC--CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCccc--ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 578999999999998776 89999999986544 56777789999999999999999987 788999999999999999
Q ss_pred cccccccccccCcccEEeCCCCCCcc--CchhhccccccceecccccccccccChhhhhcCccc--ceeecccccc--c-
Q 002939 398 KLEDIRIIGELKELEILSLQGCDIEH--LPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQL--EELYMATCCI--K- 470 (864)
Q Consensus 398 ~l~~l~~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L--~~L~l~~~~~--~- 470 (864)
.++.++.. .+++|++|++++|.++. +|..++.+++|++|++++|. +.. ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 80 KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred ceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccccccc
Confidence 99988666 89999999999999985 57899999999999999997 655 236778888 9999999987 2
Q ss_pred ---cccccCCc-chhhhcCCCCccC----CCCccCcccceecccccc------cccccccccccccCCCcceEEEeeCCC
Q 002939 471 ---WEISNCSL-LEEIVGKEGGVEA----DPSFVFPRLTILQLCYLP------ELRAFYPGIHTLECPMLTKLKVSCCDK 536 (864)
Q Consensus 471 ---~~~~~~~~-L~~L~~~~~~~~~----~~~~~~~~L~~L~l~~~~------~l~~~~~~~~~~~~~~L~~L~l~~c~~ 536 (864)
..+..+.. .-.+.+..+.+.. .....+++|+.|+++++. .+.+..+ ....+++|+.|++.+|..
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEEEEEE
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhcccccccc
Confidence 23333331 1123444444332 222346777777777643 1111111 244577888888877542
Q ss_pred cccccccccccccccccCcccccCCCccccccchhhhcCCcceeecccccccccccccccCc-------ccccCccEEEe
Q 002939 537 LKCFSSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPD-------HLLNKLKVLAI 609 (864)
Q Consensus 537 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~-------~~~~~L~~L~l 609 (864)
-........ ....+++|++|++++|. ..+.+|. ..+++|+.+++
T Consensus 233 ~~~~~~~~~------------------------~~~~~~~L~~L~l~~n~-----l~~~~p~~~~~~~~~~l~~L~~l~l 283 (520)
T 2z7x_B 233 TWNSFIRIL------------------------QLVWHTTVWYFSISNVK-----LQGQLDFRDFDYSGTSLKALSIHQV 283 (520)
T ss_dssp EHHHHHHHH------------------------HHHHTSSCSEEEEEEEE-----EESCCCCCCCCCCSCCCCEEEEEEE
T ss_pred CHHHHHHHH------------------------HHhhhCcccEEEeeccc-----ccCccccchhhcccccCceeEeccc
Confidence 211100000 00114689999999995 3333443 23778999999
Q ss_pred ecCCccccchhHHHHc---ccccEEEEEccccccccccccchhhhcccccccceeecCCCcCcccccccccccccccccc
Q 002939 610 ENDKSEVLAPDLLERF---HNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQ 686 (864)
Q Consensus 610 ~~~~~~~~~~~~~~~l---~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 686 (864)
++|.+ .+|...+..+ .+|+.|++++|.+...+ ....+++|+.|++++| .++.. .+.....++
T Consensus 284 ~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--------~~~~l~~L~~L~Ls~n-~l~~~-----~~~~~~~l~ 348 (520)
T 2z7x_B 284 VSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--------CPSKISPFLHLDFSNN-LLTDT-----VFENCGHLT 348 (520)
T ss_dssp EECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--------CCSSCCCCCEEECCSS-CCCTT-----TTTTCCCCS
T ss_pred cccce-ecchhhhhcccccCceeEEEcCCCcccccc--------chhhCCcccEEEeECC-ccChh-----hhhhhccCC
Confidence 99988 7775555555 67999999999885432 1257899999999995 44442 223346789
Q ss_pred CccEEEeeccccccc---ccCCccccCCccEEEEecCcCceeeechhhhhhhccccEEEecCccchHHhhhccccccCcc
Q 002939 687 NLETLDISFCRNLKN---LLPSSASFRCLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDGCSKITELVVAIEADEANE 763 (864)
Q Consensus 687 ~L~~L~l~~c~~l~~---~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 763 (864)
+|++|++++| .+++ ++..+..+++|++|++++| .+....+...+..+++|++|++++|......+. .
T Consensus 349 ~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~------- 418 (520)
T 2z7x_B 349 ELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-C------- 418 (520)
T ss_dssp SCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG-S-------
T ss_pred CCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCC-cCCcccccchhccCccCCEEECcCCCCCcchhh-h-------
Confidence 9999999994 5654 3344678999999999985 566522344567789999999999865444441 1
Q ss_pred eeeccccCeeecCccccccccccCCceeecCccceeecccCCCccccccC-cccCCccceEeeCC-cccccccHHHHHHH
Q 002939 764 EIFFPKLESLDLNRLQSLTTFCSANYTFKFPSLCYLSVSACPKMKIFCRG-VLSAPRLEKVRLND-QNYWDADLNTIIQQ 841 (864)
Q Consensus 764 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~lp~~-~~~~~~L~~l~l~~-~~~~~~~~~~~l~~ 841 (864)
..++|+.|++++ +.++.+|.. ...+++|++|++++|+ ++.+|.. +..+++|++|++++ .|..+.++...++.
T Consensus 419 --l~~~L~~L~Ls~-N~l~~ip~~--~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~ 492 (520)
T 2z7x_B 419 --LPPRIKVLDLHS-NKIKSIPKQ--VVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 492 (520)
T ss_dssp --CCTTCCEEECCS-SCCCCCCGG--GGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHH
T ss_pred --hcccCCEEECCC-Ccccccchh--hhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECcCCCCcccCCchHHHHH
Confidence 126999999999 589988853 4589999999999985 7789987 77899999999994 44554443322244
Q ss_pred HHhh
Q 002939 842 SYYE 845 (864)
Q Consensus 842 ~~~~ 845 (864)
+..+
T Consensus 493 ~~~~ 496 (520)
T 2z7x_B 493 WLNK 496 (520)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4433
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=3e-31 Score=317.54 Aligned_cols=464 Identities=16% Similarity=0.121 Sum_probs=278.6
Q ss_pred eEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccc-cccC-CcccccCCCccEEEecC
Q 002939 319 STISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMR-LLSL-PSSIRLLTDLRTLCLDG 396 (864)
Q Consensus 319 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~l-p~~~~~l~~L~~L~L~~ 396 (864)
+..+.+++.++.+|. -.++++.|+++++... .++...|.++++|++|+|++|. +..+ |..|.++++|++|+|++
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~--~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIR--TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCC--EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCC--ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 457788889999998 4579999999986554 4555668999999999999995 4466 78899999999999999
Q ss_pred cccccc--ccccccCcccEEeCCCCCCcc-Cchh--hccccccceecccccccccccC-hhhhhcCcccceeeccccccc
Q 002939 397 CKLEDI--RIIGELKELEILSLQGCDIEH-LPRE--IGQLTQLKLLDLSYCFELKVIA-PNVLSNLSQLEELYMATCCIK 470 (864)
Q Consensus 397 ~~l~~l--~~~~~l~~L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~ 470 (864)
|.++.+ ..++++++|++|++++|.++. +|.. +..+++|++|++++|. +..++ +..++++++|++|++++|.+.
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCC
Confidence 999987 569999999999999999984 5655 8999999999999997 65553 356899999999999999864
Q ss_pred c----ccccC--CcchhhhcCCCCccCCCCcc---Cc------ccceeccccccccccccccc-ccccCCCcceEEEeeC
Q 002939 471 W----EISNC--SLLEEIVGKEGGVEADPSFV---FP------RLTILQLCYLPELRAFYPGI-HTLECPMLTKLKVSCC 534 (864)
Q Consensus 471 ~----~~~~~--~~L~~L~~~~~~~~~~~~~~---~~------~L~~L~l~~~~~l~~~~~~~-~~~~~~~L~~L~l~~c 534 (864)
. .+..+ ++|+.|.++.+.+....... ++ .|+.|+++++.--...+... .......+..+.+..+
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 3 45555 78888888888776533221 22 37888887753211111110 0112245566665522
Q ss_pred CCcccccccccccccccccCcccccCCCccccccchhhhcCCcceeecccccccccccccccCcccccCccEEEeecCCc
Q 002939 535 DKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKS 614 (864)
Q Consensus 535 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~ 614 (864)
..-..... ..+. .. ..........++|+.|++++|. +.......+ ..+++|+.|++++|.+
T Consensus 242 ~~~~~~~~--~~l~---------~~-----~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~--~~l~~L~~L~L~~n~i 302 (844)
T 3j0a_A 242 IMGAGFGF--HNIK---------DP-----DQNTFAGLARSSVRHLDLSHGF-VFSLNSRVF--ETLKDLKVLNLAYNKI 302 (844)
T ss_dssp CCBCSSSC--SSST---------TG-----GGTTTTTTTTSCCCEEECTTCC-CCEECSCCS--SSCCCCCEEEEESCCC
T ss_pred cccccccc--cccC---------CC-----ChhhhhccccCCccEEECCCCc-ccccChhhh--hcCCCCCEEECCCCcC
Confidence 11110000 0000 00 0000000113566777776663 221111111 1256667777777666
Q ss_pred cccchhHHHHcccccEEEEEccccccccccccchhhhcccccccceeecCCCcCccccccccccccccccccCccEEEee
Q 002939 615 EVLAPDLLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDIS 694 (864)
Q Consensus 615 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~ 694 (864)
...++..+..+++|++|++++|.++.+ .|..+..+++|+.|+++++ .++.+ .......+++|++|+++
T Consensus 303 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~L~~N-~i~~~-----~~~~~~~l~~L~~L~Ls 370 (844)
T 3j0a_A 303 NKIADEAFYGLDNLQVLNLSYNLLGEL------YSSNFYGLPKVAYIDLQKN-HIAII-----QDQTFKFLEKLQTLDLR 370 (844)
T ss_dssp CEECTTTTTTCSSCCEEEEESCCCSCC------CSCSCSSCTTCCEEECCSC-CCCCC-----CSSCSCSCCCCCEEEEE
T ss_pred CCCChHHhcCCCCCCEEECCCCCCCcc------CHHHhcCCCCCCEEECCCC-CCCcc-----ChhhhcCCCCCCEEECC
Confidence 666665566667777777776666322 2344556666666666663 34333 11123345555555555
Q ss_pred ccccccccc-------------------CC----------------------ccccCCccEEEEecCcCceeeechhhhh
Q 002939 695 FCRNLKNLL-------------------PS----------------------SASFRCLTKLSVWCCEQLINLVTSSAAK 733 (864)
Q Consensus 695 ~c~~l~~~~-------------------~~----------------------~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 733 (864)
+ +.++.++ .. ...+++|+.|+++++ ++........+.
T Consensus 371 ~-N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 448 (844)
T 3j0a_A 371 D-NALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPS 448 (844)
T ss_dssp T-CCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSC
T ss_pred C-CCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCC-cccccccccccc
Confidence 5 2333321 11 012334444444432 232222111222
Q ss_pred hhccccEEEecCccchHHhhhccccccCcceeeccccCeeecCccccccccccCCceeecCccceeecccCCCccccccC
Q 002939 734 NLVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFCSANYTFKFPSLCYLSVSACPKMKIFCRG 813 (864)
Q Consensus 734 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~lp~~ 813 (864)
.+++|++|++++|. ++..+.... .......+++|+.|++++ +.++.++.. .+.++++|++|+++++ .++.+|..
T Consensus 449 ~~~~L~~L~Ls~N~-l~~~~~~~~--~~~~~~~l~~L~~L~Ls~-N~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~l~~~ 522 (844)
T 3j0a_A 449 ENPSLEQLFLGENM-LQLAWETEL--CWDVFEGLSHLQVLYLNH-NYLNSLPPG-VFSHLTALRGLSLNSN-RLTVLSHN 522 (844)
T ss_dssp SCTTCCBCEEESCC-CSSSCCSCC--CSSCSSCBCCEECCCCCH-HHHTTCCTT-SSSSCCSCSEEEEESC-CCSSCCCC
T ss_pred cCCccccccCCCCc-ccccccccc--chhhhcCcccccEEECCC-CcccccChh-HccchhhhheeECCCC-CCCccChh
Confidence 33444444444432 111100000 000112367888888888 578887764 4567889999999887 47777765
Q ss_pred cccCCccceEeeCC
Q 002939 814 VLSAPRLEKVRLND 827 (864)
Q Consensus 814 ~~~~~~L~~l~l~~ 827 (864)
.. .++|+.|++++
T Consensus 523 ~~-~~~L~~L~Ls~ 535 (844)
T 3j0a_A 523 DL-PANLEILDISR 535 (844)
T ss_dssp CC-CSCCCEEEEEE
T ss_pred hh-hccccEEECCC
Confidence 54 38899999883
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=7.3e-31 Score=302.37 Aligned_cols=467 Identities=18% Similarity=0.189 Sum_probs=327.2
Q ss_pred ceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC-CcccccCCCccEEEecC
Q 002939 318 CSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDG 396 (864)
Q Consensus 318 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~ 396 (864)
.+.++.++..++.+|..+. ++++.|+++++... .++...|.++++|++|++++|.+..+ |..|+++++|++|++++
T Consensus 9 ~~~~~c~~~~l~~ip~~l~-~~l~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNLP-FSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TTEEECCSSCCSSCCSSSC-SSCCEEECCSCCCC--EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEeCCCCccccCCCcc-ccccEEEccCCccC--ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 4457777788889998653 58999999986544 56666789999999999999999988 56799999999999999
Q ss_pred cccccc--ccccccCcccEEeCCCCCCccCch-hhccccccceecccccccccccC-hhhhhcCcccceeecccccccc-
Q 002939 397 CKLEDI--RIIGELKELEILSLQGCDIEHLPR-EIGQLTQLKLLDLSYCFELKVIA-PNVLSNLSQLEELYMATCCIKW- 471 (864)
Q Consensus 397 ~~l~~l--~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~- 471 (864)
|.++.+ ..++++++|++|++++|+++.+|. .++.+++|++|++++|. +..+. +..++++++|++|++++|.+..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCcccee
Confidence 999887 469999999999999999998875 68999999999999997 66532 4458999999999999998753
Q ss_pred ---ccccCCcc----hhhhcCCCCccCCCCccCc--ccceecccccccccccccccccccCCCcceEEEe--eCCC---c
Q 002939 472 ---EISNCSLL----EEIVGKEGGVEADPSFVFP--RLTILQLCYLPELRAFYPGIHTLECPMLTKLKVS--CCDK---L 537 (864)
Q Consensus 472 ---~~~~~~~L----~~L~~~~~~~~~~~~~~~~--~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~--~c~~---l 537 (864)
.++.+++| ..++++.+.+...+...|. +|+.|++.+...-... .......++.++.+.+. .... +
T Consensus 165 ~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~l~~l~~~~l~~~~~~~~~~l 243 (570)
T 2z63_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNV-MKTCIQGLAGLEVHRLVLGEFRNEGNL 243 (570)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTH-HHHHHHTTTTCEEEEEEEEECCCCSSC
T ss_pred cHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccc-hhhhhcCccccceeeeccccccCchhh
Confidence 46667777 6778888877665444443 5777777653210000 00011122333322221 1111 1
Q ss_pred cccccc-ccccccccccCcccccCCCc----cccccchhhhcCCcceeecccccccccccccccCccc--ccCccEEEee
Q 002939 538 KCFSSE-LYSLHENNEEGQLIDVPVPA----QQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHL--LNKLKVLAIE 610 (864)
Q Consensus 538 ~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~--~~~L~~L~l~ 610 (864)
..++.. +..+.... +..+.... ..........+++|+.|++++|. +. .+|... + +|++|+++
T Consensus 244 ~~~~~~~~~~l~~l~----l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~-----~l~~~~~~~-~L~~L~l~ 312 (570)
T 2z63_A 244 EKFDKSALEGLCNLT----IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IE-----RVKDFSYNF-GWQHLELV 312 (570)
T ss_dssp EECCTTTTGGGGGSE----EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-EC-----SCCBCCSCC-CCSEEEEE
T ss_pred hhcchhhhccccccc----hhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-ch-----hhhhhhccC-CccEEeec
Confidence 111000 00000000 00000000 00011123347899999999984 32 233222 4 89999999
Q ss_pred cCCccccchhHHHHcccccEEEEEccccccccccccchhhhcccccccceeecCCCcCccccccccccccccccccCccE
Q 002939 611 NDKSEVLAPDLLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLET 690 (864)
Q Consensus 611 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~ 690 (864)
+|.+..+|. ..+++|+.|++++|.+...+ +. ..+++|+.|+++++ .++.+. ........+++|++
T Consensus 313 ~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~------~~--~~~~~L~~L~l~~n-~l~~~~---~~~~~~~~~~~L~~ 377 (570)
T 2z63_A 313 NCKFGQFPT---LKLKSLKRLTFTSNKGGNAF------SE--VDLPSLEFLDLSRN-GLSFKG---CCSQSDFGTTSLKY 377 (570)
T ss_dssp SCBCSSCCB---CBCSSCCEEEEESCBSCCBC------CC--CBCTTCCEEECCSS-CCBEEE---EEEHHHHTCSCCCE
T ss_pred cCcccccCc---ccccccCEEeCcCCcccccc------cc--ccCCCCCEEeCcCC-ccCccc---cccccccccCccCE
Confidence 999988776 47899999999988875322 22 57899999999995 444331 01223456899999
Q ss_pred EEeecccccccccCCccccCCccEEEEecCcCceeeechhhhhhhccccEEEecCccchHHhhhccccccCcceeecccc
Q 002939 691 LDISFCRNLKNLLPSSASFRCLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKL 770 (864)
Q Consensus 691 L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L 770 (864)
|++++| .+..+++.+..+++|++|++++| .+....+...+..+++|++|++++|......+ ..+.+ +++|
T Consensus 378 L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~-------l~~L 447 (570)
T 2z63_A 378 LDLSFN-GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNG-------LSSL 447 (570)
T ss_dssp EECCSC-SEEEEEEEEETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSCCEECCT-TTTTT-------CTTC
T ss_pred EECCCC-ccccccccccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCcccccch-hhhhc-------CCcC
Confidence 999994 67777666788999999999985 56665444567889999999999986443333 44443 8999
Q ss_pred CeeecCcccccc--ccccCCceeecCccceeecccCCCccccccCcccCCccceEeeCCc
Q 002939 771 ESLDLNRLQSLT--TFCSANYTFKFPSLCYLSVSACPKMKIFCRGVLSAPRLEKVRLNDQ 828 (864)
Q Consensus 771 ~~L~l~~c~~L~--~l~~~~~~~~~~~L~~L~i~~C~~l~~lp~~~~~~~~L~~l~l~~~ 828 (864)
+.|++++| .++ .+| ..+..+++|++|++++|......|..+..+++|++|+++++
T Consensus 448 ~~L~l~~n-~l~~~~~p--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 448 EVLKMAGN-SFQENFLP--DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp CEEECTTC-EEGGGEEC--SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEECcCC-cCccccch--hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 99999996 454 455 45778999999999999866555888888999999999854
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=6.7e-31 Score=307.65 Aligned_cols=394 Identities=13% Similarity=0.148 Sum_probs=257.6
Q ss_pred ccceEEEeecCCcc-CCCCCC-cCCCceEEEe-cCCCCC-----------------------------------------
Q 002939 316 KKCSTISLHGNNIS-EIPQGW-ECPQLEFFYI-FAPEDS----------------------------------------- 351 (864)
Q Consensus 316 ~~l~~L~l~~~~~~-~~~~~~-~~~~L~~L~l-~~~~~~----------------------------------------- 351 (864)
.++..|+|+++.+. .+|+.+ .+++|+.|++ +.|...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 47889999999988 777776 8999999999 433100
Q ss_pred ----------------------------------CCCCCchhhcCCCCceEEEEecccccc------------------C
Q 002939 352 ----------------------------------PLKIPDNIFMGMPKLKVLLFIRMRLLS------------------L 379 (864)
Q Consensus 352 ----------------------------------~~~~~~~~~~~l~~Lr~L~L~~~~i~~------------------l 379 (864)
...+|.. |.++++|++|+|++|.+.. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0004443 4667777777777777776 7
Q ss_pred Ccccc--cCCCccEEEecCcccccc--ccccccCcccEEeCCCCC-Ccc--Cchhhcccc-------ccceecccccccc
Q 002939 380 PSSIR--LLTDLRTLCLDGCKLEDI--RIIGELKELEILSLQGCD-IEH--LPREIGQLT-------QLKLLDLSYCFEL 445 (864)
Q Consensus 380 p~~~~--~l~~L~~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~-i~~--lp~~~~~l~-------~L~~L~l~~~~~l 445 (864)
|..++ ++++|++|+|++|.+... ..++++++|++|++++|+ ++. +|..++.++ +|++|++++|. +
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-L 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-C
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-C
Confidence 77766 777777777777765442 457777777777777776 663 676666665 77777777775 5
Q ss_pred cccCh-hhhhcCcccceeeccccccccccccCCcchhhhcCCCCccCCCCccCcccceecccccccccccccccccccCC
Q 002939 446 KVIAP-NVLSNLSQLEELYMATCCIKWEISNCSLLEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGIHTLECP 524 (864)
Q Consensus 446 ~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 524 (864)
..+|. ..++++++|++|++++|.+. .+. ....+++|+.|+++++. +..++.. ...++
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp------------------~~~~L~~L~~L~Ls~N~-l~~lp~~--l~~l~ 618 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVR-HLE------------------AFGTNVKLTDLKLDYNQ-IEEIPED--FCAFT 618 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCC-BCC------------------CCCTTSEESEEECCSSC-CSCCCTT--SCEEC
T ss_pred CccCChhhhhcCCCCCEEECCCCCcc-cch------------------hhcCCCcceEEECcCCc-cccchHH--Hhhcc
Confidence 56655 24677777777777776543 111 11234566666666543 2333322 34566
Q ss_pred C-cceEEEeeCCCcccccccccccccccccCcccccCCCccccccchhhhcCCcceeecccccccccccccccCc---c-
Q 002939 525 M-LTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPD---H- 599 (864)
Q Consensus 525 ~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~---~- 599 (864)
+ |+.|++++|. +..+|..+... ..++|+.|++++|. +.+..|. .
T Consensus 619 ~~L~~L~Ls~N~-L~~lp~~~~~~-------------------------~~~~L~~L~Ls~N~-----l~g~ip~l~~~l 667 (876)
T 4ecn_A 619 DQVEGLGFSHNK-LKYIPNIFNAK-------------------------SVYVMGSVDFSYNK-----IGSEGRNISCSM 667 (876)
T ss_dssp TTCCEEECCSSC-CCSCCSCCCTT-------------------------CSSCEEEEECCSSC-----TTTTSSSCSSCT
T ss_pred ccCCEEECcCCC-CCcCchhhhcc-------------------------ccCCCCEEECcCCc-----CCCccccchhhh
Confidence 6 8888888765 33444322110 13569999999985 2222221 1
Q ss_pred ---cccCccEEEeecCCccccchhHHHHcccccEEEEEccccccccccccch-hhhcccccccceeecCCCcCccccccc
Q 002939 600 ---LLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSYKELFSNEGQV-EKLVGKLARIKCLQLSGLNDLKHLWLW 675 (864)
Q Consensus 600 ---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~~ 675 (864)
.+++|+.|++++|.+..+|...+..+++|+.|++++|.+..++...... +..+.++++|+.|+|++| .++.++
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp-- 744 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLS-- 744 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCC--
T ss_pred ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC-CCccch--
Confidence 1458999999999999999988889999999999999997665432211 112345668999999985 566552
Q ss_pred ccccccc--ccccCccEEEeecccccccccCCccccCCccEEEEecCc-----CceeeechhhhhhhccccEEEecCccc
Q 002939 676 EENSKLN--MIFQNLETLDISFCRNLKNLLPSSASFRCLTKLSVWCCE-----QLINLVTSSAAKNLVQLVTMKVDGCSK 748 (864)
Q Consensus 676 ~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~-----~l~~~~~~~~~~~l~~L~~L~l~~c~~ 748 (864)
... ..+++|+.|++++ +.++++|..+..+++|+.|++++++ ++... .+..+..+++|++|++++|..
T Consensus 745 ----~~l~~~~l~~L~~L~Ls~-N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~-ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 745 ----DDFRATTLPYLSNMDVSY-NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ-WPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp ----GGGSTTTCTTCCEEECCS-SCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSSCC
T ss_pred ----HHhhhccCCCcCEEEeCC-CCCCccchhhhcCCCCCEEECCCCCCccccccccc-ChHHHhcCCCCCEEECCCCCC
Confidence 122 2678999999998 5677787777888999999997632 33333 235667778888888888654
Q ss_pred hHHhhhccccccCcceeeccccCeeecCccccccccc
Q 002939 749 ITELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFC 785 (864)
Q Consensus 749 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 785 (864)
+.+|.. .+++|+.|+|++|+ +..+.
T Consensus 819 -~~Ip~~----------l~~~L~~LdLs~N~-l~~i~ 843 (876)
T 4ecn_A 819 -RKVDEK----------LTPQLYILDIADNP-NISID 843 (876)
T ss_dssp -CBCCSC----------CCSSSCEEECCSCT-TCEEE
T ss_pred -CccCHh----------hcCCCCEEECCCCC-CCccC
Confidence 555521 13678888888743 44443
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=6.4e-31 Score=303.85 Aligned_cols=383 Identities=12% Similarity=0.151 Sum_probs=248.7
Q ss_pred CCchhhcCCCCceEEEEecccccc------------------CCcccc--cCCCccEEEecCcccccc--ccccccCccc
Q 002939 355 IPDNIFMGMPKLKVLLFIRMRLLS------------------LPSSIR--LLTDLRTLCLDGCKLEDI--RIIGELKELE 412 (864)
Q Consensus 355 ~~~~~~~~l~~Lr~L~L~~~~i~~------------------lp~~~~--~l~~L~~L~L~~~~l~~l--~~~~~l~~L~ 412 (864)
+|.. |.++++|++|+|++|.+.. +|..++ ++++|++|++++|.+... ..++++++|+
T Consensus 198 ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 4443 5778888888888888876 888877 888888888888876553 4578888888
Q ss_pred EEeCCCCC-Cc--cCchhhccc------cccceecccccccccccCh-hhhhcCcccceeeccccccccccccCCcchhh
Q 002939 413 ILSLQGCD-IE--HLPREIGQL------TQLKLLDLSYCFELKVIAP-NVLSNLSQLEELYMATCCIKWEISNCSLLEEI 482 (864)
Q Consensus 413 ~L~l~~~~-i~--~lp~~~~~l------~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L 482 (864)
+|++++|+ ++ .+|..++.+ ++|++|++++|. +..+|. ..++++++|++|++++|.+.+.+.
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-------- 347 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-------- 347 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC--------
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh--------
Confidence 88888887 76 377777776 788888888886 667765 247788888888888776553221
Q ss_pred hcCCCCccCCCCccCcccceecccccccccccccccccccCCC-cceEEEeeCCCcccccccccccccccccCcccccCC
Q 002939 483 VGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPM-LTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPV 561 (864)
Q Consensus 483 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~ 561 (864)
....+++|+.|+++++. +..++.. ...+++ |+.|++++|. +..+|..+..
T Consensus 348 ----------~~~~l~~L~~L~L~~N~-l~~lp~~--l~~l~~~L~~L~Ls~N~-l~~lp~~~~~--------------- 398 (636)
T 4eco_A 348 ----------AFGSEIKLASLNLAYNQ-ITEIPAN--FCGFTEQVENLSFAHNK-LKYIPNIFDA--------------- 398 (636)
T ss_dssp ----------CCEEEEEESEEECCSSE-EEECCTT--SEEECTTCCEEECCSSC-CSSCCSCCCT---------------
T ss_pred ----------hhCCCCCCCEEECCCCc-cccccHh--hhhhcccCcEEEccCCc-Ccccchhhhh---------------
Confidence 11123556666666532 3333322 445666 8888888765 3344432211
Q ss_pred CccccccchhhhcCCcceeecccccccccccccccC-cc----cccCccEEEeecCCccccchhHHHHcccccEEEEEcc
Q 002939 562 PAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFP-DH----LLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADG 636 (864)
Q Consensus 562 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p-~~----~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 636 (864)
..+++|++|++++|. +.......++ .. .+++|++|++++|.+..+|+..+..+++|+.|++++|
T Consensus 399 ----------~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 399 ----------KSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp ----------TCSSCEEEEECCSSC-TTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS
T ss_pred ----------cccCccCEEECcCCc-CCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC
Confidence 014589999999985 2221111121 00 2468999999999999999888888999999999999
Q ss_pred ccccccccccc-hhhhcccccccceeecCCCcCcccccccccccccc--ccccCccEEEeecccccccccCCccccCCcc
Q 002939 637 SYKELFSNEGQ-VEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLN--MIFQNLETLDISFCRNLKNLLPSSASFRCLT 713 (864)
Q Consensus 637 ~l~~~~~~~~~-l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~ 713 (864)
.++.++..... .+..+.++++|+.|++++| .++.++ ... ..+++|++|++++ +.++++|..+..+++|+
T Consensus 468 ~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp------~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~~l~~L~ 539 (636)
T 4eco_A 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLS------DDFRATTLPYLVGIDLSY-NSFSKFPTQPLNSSTLK 539 (636)
T ss_dssp CCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCC------GGGSTTTCTTCCEEECCS-SCCSSCCCGGGGCSSCC
T ss_pred CCCCcCHHHhccccccccccCCccEEECcCC-cCCccC------hhhhhccCCCcCEEECCC-CCCCCcChhhhcCCCCC
Confidence 99766542221 1112334558999999984 566552 122 2678899999998 56777777778888999
Q ss_pred EEEEecC-----cCceeeechhhhhhhccccEEEecCccchHHhhhccccccCcceeeccccCeeecCccccccccccCC
Q 002939 714 KLSVWCC-----EQLINLVTSSAAKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFCSAN 788 (864)
Q Consensus 714 ~L~l~~c-----~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 788 (864)
.|+++++ +++.... +..+..+++|++|++++|.. +.+|.. .+++|+.|+|++| .++.+....
T Consensus 540 ~L~Ls~N~~ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l-~~ip~~----------~~~~L~~L~Ls~N-~l~~~~~~~ 606 (636)
T 4eco_A 540 GFGIRNQRDAQGNRTLREW-PEGITLCPSLTQLQIGSNDI-RKVNEK----------ITPNISVLDIKDN-PNISIDLSY 606 (636)
T ss_dssp EEECCSCBCTTCCBCCCCC-CTTGGGCSSCCEEECCSSCC-CBCCSC----------CCTTCCEEECCSC-TTCEEECTT
T ss_pred EEECCCCcccccCcccccC-hHHHhcCCCCCEEECCCCcC-CccCHh----------HhCcCCEEECcCC-CCccccHHh
Confidence 9998643 2333322 35667788888888888654 555521 1378888888884 444443221
Q ss_pred c-------eeecCccceeecccCCCcc
Q 002939 789 Y-------TFKFPSLCYLSVSACPKMK 808 (864)
Q Consensus 789 ~-------~~~~~~L~~L~i~~C~~l~ 808 (864)
. ...+...+..+|.+|+.+.
T Consensus 607 ~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 607 VCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp THHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred cchhhhcccceeecCCccccCCCcccc
Confidence 1 1122233445667777654
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=8e-31 Score=300.28 Aligned_cols=436 Identities=14% Similarity=0.128 Sum_probs=327.5
Q ss_pred hhhccceEEEeecCCccCCCCC-C-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEecccccc--CCcccccCCC
Q 002939 313 YLLKKCSTISLHGNNISEIPQG-W-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLS--LPSSIRLLTD 388 (864)
Q Consensus 313 ~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~--lp~~~~~l~~ 388 (864)
..++++++|++++|.+..+++. + .+++|++|+++++... .++...|.++++|++|++++|.+.. +|..++++++
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS--SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC--SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC--ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 3568999999999999987753 3 8899999999986544 5777878999999999999999985 4778999999
Q ss_pred ccEEEecCcc-cccc--ccccccCcccEEeCCCCCCc-cCchhhccccccceecccccccccccChhhhhcCcccceeec
Q 002939 389 LRTLCLDGCK-LEDI--RIIGELKELEILSLQGCDIE-HLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYM 464 (864)
Q Consensus 389 L~~L~L~~~~-l~~l--~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 464 (864)
|++|++++|. +..+ ..++++++|++|++++|+++ ..|..++.+++|++|+++.|. ...++...+..+++|++|++
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L 203 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLEL 203 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEE
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHhhcccccEEEc
Confidence 9999999997 6666 46999999999999999998 478899999999999999996 77777665678999999999
Q ss_pred cccccccc-------cccCCcchhhhcCCCCccCC-------CCccCcccceeccccccccc--cccc--ccccccCCCc
Q 002939 465 ATCCIKWE-------ISNCSLLEEIVGKEGGVEAD-------PSFVFPRLTILQLCYLPELR--AFYP--GIHTLECPML 526 (864)
Q Consensus 465 ~~~~~~~~-------~~~~~~L~~L~~~~~~~~~~-------~~~~~~~L~~L~l~~~~~l~--~~~~--~~~~~~~~~L 526 (864)
++|.+... ...+++|+.|.+..+.+... ....+++|+.++++++.... .+.. ......++++
T Consensus 204 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L 283 (549)
T 2z81_A 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283 (549)
T ss_dssp ESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTC
T ss_pred cCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccc
Confidence 99987641 24577888888888765432 12345788889888764321 1110 1123456788
Q ss_pred ceEEEeeCCCcccccccccccccccccCcccccCCCccccccchhhhcCCcceeecccccccccccccccCccc---ccC
Q 002939 527 TKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHL---LNK 603 (864)
Q Consensus 527 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~---~~~ 603 (864)
+.+.+.++..-.... . ..........++|+.|++++|. + ..+|... +++
T Consensus 284 ~~L~l~~~~i~~~~~--~--------------------~~l~~~~~~~~~L~~L~l~~n~-l-----~~ip~~~~~~l~~ 335 (549)
T 2z81_A 284 ETVTIRRLHIPQFYL--F--------------------YDLSTVYSLLEKVKRITVENSK-V-----FLVPCSFSQHLKS 335 (549)
T ss_dssp CEEEEESCBCSCGGG--S--------------------CCCCHHHHHSTTCCEEEEESSC-C-----CCCCHHHHHHCTT
T ss_pred ccccccccccchhhh--c--------------------ccchhhhhhcccceEEEeccCc-c-----ccCCHHHHhcCcc
Confidence 888887653211100 0 0011122336789999999984 2 2445432 789
Q ss_pred ccEEEeecCCccccchh---HHHHcccccEEEEEccccccccccccchhhhcccccccceeecCCCcCcccccccccccc
Q 002939 604 LKVLAIENDKSEVLAPD---LLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSK 680 (864)
Q Consensus 604 L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 680 (864)
|++|++++|.+....+. .++.+++|+.|++++|.++.++. .+..+..+++|+.|++++| .++.++ .
T Consensus 336 L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~~~l~~L~~L~Ls~N-~l~~lp------~ 404 (549)
T 2z81_A 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK----TGEILLTLKNLTSLDISRN-TFHPMP------D 404 (549)
T ss_dssp CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH----HHHHGGGCTTCCEEECTTC-CCCCCC------S
T ss_pred ccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc----chhhhhcCCCCCEEECCCC-CCccCC------h
Confidence 99999999998875432 25678999999999999964421 1235778999999999995 666652 2
Q ss_pred ccccccCccEEEeecccccccccCCccccCCccEEEEecCcCceeeechhhhhhhccccEEEecCccchHHhhhcccccc
Q 002939 681 LNMIFQNLETLDISFCRNLKNLLPSSASFRCLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDGCSKITELVVAIEADE 760 (864)
Q Consensus 681 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 760 (864)
....+++|++|++++| .++.++... +++|+.|++++| +++..+ ..+++|++|++++| .++.+|. . .
T Consensus 405 ~~~~~~~L~~L~Ls~N-~l~~l~~~~--~~~L~~L~Ls~N-~l~~~~-----~~l~~L~~L~Ls~N-~l~~ip~-~-~-- 470 (549)
T 2z81_A 405 SCQWPEKMRFLNLSST-GIRVVKTCI--PQTLEVLDVSNN-NLDSFS-----LFLPRLQELYISRN-KLKTLPD-A-S-- 470 (549)
T ss_dssp CCCCCTTCCEEECTTS-CCSCCCTTS--CTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSSCCC-G-G--
T ss_pred hhcccccccEEECCCC-Ccccccchh--cCCceEEECCCC-Chhhhc-----ccCChhcEEECCCC-ccCcCCC-c-c--
Confidence 3346789999999994 577765443 479999999986 666652 57889999999997 5556652 1 1
Q ss_pred CcceeeccccCeeecCccccccccccCCceeecCccceeecccCCCccccc
Q 002939 761 ANEEIFFPKLESLDLNRLQSLTTFCSANYTFKFPSLCYLSVSACPKMKIFC 811 (864)
Q Consensus 761 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~lp 811 (864)
.+++|+.|++++ +.++.++.. .+.++++|+.|++++|+-....|
T Consensus 471 -----~l~~L~~L~Ls~-N~l~~~~~~-~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 471 -----LFPVLLVMKISR-NQLKSVPDG-IFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp -----GCTTCCEEECCS-SCCCCCCTT-GGGGCTTCCEEECCSSCBCCCHH
T ss_pred -----cCccCCEEecCC-CccCCcCHH-HHhcCcccCEEEecCCCccCCCc
Confidence 389999999999 688888764 56789999999999999655444
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=3.4e-29 Score=292.80 Aligned_cols=490 Identities=16% Similarity=0.103 Sum_probs=313.7
Q ss_pred hhhhccceEEEeecCCccCCCCC-C-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCc-ccccCCC
Q 002939 312 KYLLKKCSTISLHGNNISEIPQG-W-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPS-SIRLLTD 388 (864)
Q Consensus 312 ~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~ 388 (864)
.+.+.++++|++++|.++.+++. + .+++|++|++++|... .+++..|.++++|++|+|++|.++.+|. .|.++++
T Consensus 48 ~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~--~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 48 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp SSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC--CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 34567899999999999988864 3 8899999999885544 6788888999999999999999998864 5899999
Q ss_pred ccEEEecCccccccc--cccccCcccEEeCCCCCCcc--CchhhccccccceecccccccccccChhhhhcCcccc----
Q 002939 389 LRTLCLDGCKLEDIR--IIGELKELEILSLQGCDIEH--LPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLE---- 460 (864)
Q Consensus 389 L~~L~L~~~~l~~l~--~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~---- 460 (864)
|++|+|++|+++.++ .|+++++|++|++++|.++. +|..++.+++|++|++++|. ++.+++..+..+.+++
T Consensus 126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNL 204 (635)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCC
T ss_pred CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhhhhhhh
Confidence 999999999999884 48999999999999998874 57888899999999999996 8887777677666554
Q ss_pred eeecccccccc---ccccCCcchhhhcCCCC-------------------------------ccCCCCccCc---cccee
Q 002939 461 ELYMATCCIKW---EISNCSLLEEIVGKEGG-------------------------------VEADPSFVFP---RLTIL 503 (864)
Q Consensus 461 ~L~l~~~~~~~---~~~~~~~L~~L~~~~~~-------------------------------~~~~~~~~~~---~L~~L 503 (864)
.++++.|.+.. .......+..+.+..+. ........+. .+...
T Consensus 205 ~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 284 (635)
T 4g8a_A 205 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 284 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEE
T ss_pred hhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhh
Confidence 35555554321 11111111122111110 0000011111 11111
Q ss_pred ccccccccccc-ccccccccCCCcceEEEeeCCCcccccccc-cccccccccCcccccCCCccccccchhhhcCCcceee
Q 002939 504 QLCYLPELRAF-YPGIHTLECPMLTKLKVSCCDKLKCFSSEL-YSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELR 581 (864)
Q Consensus 504 ~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 581 (864)
.+.....-... ...........++.+.+..+......+... ..+..+..... .........++.|+.+.
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~---------~~~~~~~~~l~~L~~l~ 355 (635)
T 4g8a_A 285 EFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC---------KFGQFPTLKLKSLKRLT 355 (635)
T ss_dssp EEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESC---------EESSCCCCBCTTCCEEE
T ss_pred hhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccc---------cccCcCcccchhhhhcc
Confidence 11110000000 000111223455555554432211111000 00000000000 00000011256677777
Q ss_pred cccccccccccccccCcccccCccEEEeecCCccc--cchhHHHHcccccEEEEEccccccccccccchhhhcccccccc
Q 002939 582 LSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEV--LAPDLLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIK 659 (864)
Q Consensus 582 l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~ 659 (864)
+..+. .....+...+++|+.|++++|.+.. ..+..+..+.+|+.|++..+.... .+..+..+++|+
T Consensus 356 l~~n~-----~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-------~~~~~~~l~~L~ 423 (635)
T 4g8a_A 356 FTSNK-----GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-------MSSNFLGLEQLE 423 (635)
T ss_dssp EESCC-----SCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-------ECSCCTTCTTCC
T ss_pred ccccc-----CCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-------cccccccccccc
Confidence 76664 2222222336788888888877653 234445678888888888776632 234466788999
Q ss_pred eeecCCCcCccccccccccccccccccCccEEEeeccccccccc-CCccccCCccEEEEecCcCceeeechhhhhhhccc
Q 002939 660 CLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKNLL-PSSASFRCLTKLSVWCCEQLINLVTSSAAKNLVQL 738 (864)
Q Consensus 660 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L 738 (864)
.+++..+...... .......+++++.+++++ +.+.... .....+++|+.|+++++.....+ .+..+..+++|
T Consensus 424 ~l~l~~~~~~~~~-----~~~~~~~l~~l~~l~ls~-n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~-~~~~~~~l~~L 496 (635)
T 4g8a_A 424 HLDFQHSNLKQMS-----EFSVFLSLRNLIYLDISH-THTRVAFNGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNL 496 (635)
T ss_dssp EEECTTSEEESTT-----SSCTTTTCTTCCEEECTT-SCCEECCTTTTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTC
T ss_pred chhhhhccccccc-----cccccccccccccccccc-cccccccccccccchhhhhhhhhhccccccc-Cchhhhhcccc
Confidence 9999886544332 233455688999999998 4555543 34567899999999987655544 34677889999
Q ss_pred cEEEecCccchHHhhhccccccCcceeeccccCeeecCccccccccccCCceeecCccceeecccCCCccccccCcccC-
Q 002939 739 VTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFCSANYTFKFPSLCYLSVSACPKMKIFCRGVLSA- 817 (864)
Q Consensus 739 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~lp~~~~~~- 817 (864)
++|++++| .++.+++..+.+ +++|+.|+|++ ++|+.++.. .+.++++|++|+++++.-....|..+..+
T Consensus 497 ~~L~Ls~N-~L~~l~~~~f~~-------l~~L~~L~Ls~-N~l~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 566 (635)
T 4g8a_A 497 TFLDLSQC-QLEQLSPTAFNS-------LSSLQVLNMSH-NNFFSLDTF-PYKCLNSLQVLDYSLNHIMTSKKQELQHFP 566 (635)
T ss_dssp CEEECTTS-CCCEECTTTTTT-------CTTCCEEECTT-SCCCBCCCG-GGTTCTTCCEEECTTSCCCBCCSSCTTCCC
T ss_pred CEEECCCC-ccCCcChHHHcC-------CCCCCEEECCC-CcCCCCChh-HHhCCCCCCEEECCCCcCCCCCHHHHHhhh
Confidence 99999997 566665566654 89999999999 689998764 46689999999999987555556667666
Q ss_pred CccceEeeC-CcccccccHHHHHHHHH
Q 002939 818 PRLEKVRLN-DQNYWDADLNTIIQQSY 843 (864)
Q Consensus 818 ~~L~~l~l~-~~~~~~~~~~~~l~~~~ 843 (864)
++|+.|+++ ..|.++.++ ..+.++.
T Consensus 567 ~~L~~L~L~~Np~~C~C~~-~~~~~wl 592 (635)
T 4g8a_A 567 SSLAFLNLTQNDFACTCEH-QSFLQWI 592 (635)
T ss_dssp TTCCEEECTTCCBCCSGGG-HHHHHHH
T ss_pred CcCCEEEeeCCCCcccCCc-HHHHHHH
Confidence 689999999 567777663 3344443
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=7.6e-29 Score=283.78 Aligned_cols=448 Identities=17% Similarity=0.171 Sum_probs=311.2
Q ss_pred ccceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC-CcccccCCCccEEEe
Q 002939 316 KKCSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCL 394 (864)
Q Consensus 316 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L 394 (864)
...++++++++.++.+|..+. ++++.|+++++... .++...|.++++|++|++++|.++.+ |..|.++++|++|+|
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSIS--ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCC--CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCCCccCCCCCC-CCcCEEECCCCCcc--ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 345899999999999998765 89999999986554 57777789999999999999999987 778999999999999
Q ss_pred cCccccccccccccCcccEEeCCCCCCccC--chhhccccccceecccccccccccChhhhhcCccc--ceeecccccc-
Q 002939 395 DGCKLEDIRIIGELKELEILSLQGCDIEHL--PREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQL--EELYMATCCI- 469 (864)
Q Consensus 395 ~~~~l~~l~~~~~l~~L~~L~l~~~~i~~l--p~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L--~~L~l~~~~~- 469 (864)
++|.++.++.. .+++|++|++++|+++.+ |..++.+++|++|++++|. +.... +..+++| ++|++++|.+
T Consensus 108 s~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 108 SHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp TTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSCC
T ss_pred CCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeeccccc
Confidence 99999988655 899999999999999876 4789999999999999996 65532 5556666 9999999877
Q ss_pred -c----cccccCC--cchhhhcCCCCccCCC----CccCcccceecccccc----cccccccccccccCCCcceEEEeeC
Q 002939 470 -K----WEISNCS--LLEEIVGKEGGVEADP----SFVFPRLTILQLCYLP----ELRAFYPGIHTLECPMLTKLKVSCC 534 (864)
Q Consensus 470 -~----~~~~~~~--~L~~L~~~~~~~~~~~----~~~~~~L~~L~l~~~~----~l~~~~~~~~~~~~~~L~~L~l~~c 534 (864)
. ..+..+. .+ .+.++.+.+.... ...+++|+.+++++.. .+..... .....+.|+.+.+.++
T Consensus 183 ~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~--~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 183 IKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS--ELTRGPTLLNVTLQHI 259 (562)
T ss_dssp CCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHH--HHHSCSSCEEEEEEEE
T ss_pred ccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHH--HHhccCcceEEEecCC
Confidence 2 2333322 11 2234444333211 1134556666665431 1111111 1233456666666654
Q ss_pred CCcccccccccccccccccCcccccCCCccccccchhhhcCCcceeecccccccccccccccCccc-------ccCccEE
Q 002939 535 DKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHL-------LNKLKVL 607 (864)
Q Consensus 535 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~-------~~~L~~L 607 (864)
..-..... . .. .....++|++|++++|. +.+.+|... ++.|+.+
T Consensus 260 ~l~~~~~~---~--------------------~~-~~~~~~~L~~L~l~~n~-----l~~~ip~~~~~~~~~~L~~L~~~ 310 (562)
T 3a79_B 260 ETTWKCSV---K--------------------LF-QFFWPRPVEYLNIYNLT-----ITERIDREEFTYSETALKSLMIE 310 (562)
T ss_dssp EECHHHHH---H--------------------HH-HHHTTSSEEEEEEEEEE-----ECSCCCCCCCCCCSCSCCEEEEE
T ss_pred cCcHHHHH---H--------------------HH-HhhhcccccEEEEeccE-----eeccccchhhhcccccchheehh
Confidence 21110000 0 00 00114589999999995 344444432 3344444
Q ss_pred EeecCCccccchhHHHHc---ccccEEEEEccccccccccccchhhhcccccccceeecCCCcCcccccccccccccccc
Q 002939 608 AIENDKSEVLAPDLLERF---HNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMI 684 (864)
Q Consensus 608 ~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 684 (864)
++..+.+ .+|...+..+ .+|+.|++++|.+.... ....+++|+.|+++++ .++.. .+.....
T Consensus 311 ~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--------~~~~l~~L~~L~l~~n-~l~~~-----~~~~~~~ 375 (562)
T 3a79_B 311 HVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMV--------CPPSPSSFTFLNFTQN-VFTDS-----VFQGCST 375 (562)
T ss_dssp EEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--------CCSSCCCCCEEECCSS-CCCTT-----TTTTCCS
T ss_pred hccccee-ecChhhhhhhhccCcceEEEccCCCccccc--------CccCCCCceEEECCCC-ccccc-----hhhhhcc
Confidence 5555665 5554444433 67999999999885321 1257899999999995 44442 2233467
Q ss_pred ccCccEEEeeccccccccc---CCccccCCccEEEEecCcCceeeechhhhhhhccccEEEecCccchHHhhhccccccC
Q 002939 685 FQNLETLDISFCRNLKNLL---PSSASFRCLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDGCSKITELVVAIEADEA 761 (864)
Q Consensus 685 ~~~L~~L~l~~c~~l~~~~---~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 761 (864)
+++|++|++++ +.+++++ ..+..+++|+.|++++| .+....+...+..+++|++|++++|..-...+ .
T Consensus 376 l~~L~~L~L~~-N~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~------ 446 (562)
T 3a79_B 376 LKRLQTLILQR-NGLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTGSVF-R------ 446 (562)
T ss_dssp CSSCCEEECCS-SCCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG-S------
T ss_pred cCCCCEEECCC-CCcCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCCCCcchh-h------
Confidence 89999999999 5677543 34678999999999985 56652334557788999999999986544333 1
Q ss_pred cceeec-cccCeeecCccccccccccCCceeecCccceeecccCCCccccccC-cccCCccceEeeC-CcccccccH
Q 002939 762 NEEIFF-PKLESLDLNRLQSLTTFCSANYTFKFPSLCYLSVSACPKMKIFCRG-VLSAPRLEKVRLN-DQNYWDADL 835 (864)
Q Consensus 762 ~~~~~~-~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~lp~~-~~~~~~L~~l~l~-~~~~~~~~~ 835 (864)
.+ ++|+.|++++ +.++.+|.. ..++++|++|++++|. ++.+|.. +..+++|+.|+++ ..|..+.++
T Consensus 447 ----~l~~~L~~L~L~~-N~l~~ip~~--~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 447 ----CLPPKVKVLDLHN-NRIMSIPKD--VTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp ----SCCTTCSEEECCS-SCCCCCCTT--TTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred ----hhcCcCCEEECCC-CcCcccChh--hcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 13 6999999999 589999864 3489999999999875 7789987 7789999999999 455554443
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=288.09 Aligned_cols=427 Identities=17% Similarity=0.152 Sum_probs=307.2
Q ss_pred eEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCC-cccccCCCccEEEecCcccccc--ccccccCcccEEeCC
Q 002939 341 EFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLP-SSIRLLTDLRTLCLDGCKLEDI--RIIGELKELEILSLQ 417 (864)
Q Consensus 341 ~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~l--~~~~~l~~L~~L~l~ 417 (864)
++++++++... .+|..++ ++|++|++++|.+..++ ..|.++++|++|++++|.++.+ ..++++++|++|+++
T Consensus 3 ~~l~ls~n~l~--~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLI--HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCS--SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCcc--ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 56788875544 6887663 89999999999999886 6799999999999999999987 469999999999999
Q ss_pred CCCCccCchhhccccccceecccccccccccC-hhhhhcCcccceeecccccccc-ccccCCcc--hhhhcCCCCc--cC
Q 002939 418 GCDIEHLPREIGQLTQLKLLDLSYCFELKVIA-PNVLSNLSQLEELYMATCCIKW-EISNCSLL--EEIVGKEGGV--EA 491 (864)
Q Consensus 418 ~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~L--~~L~~~~~~~--~~ 491 (864)
+|+++.+|.. .+++|++|++++|. +..++ +..++++++|++|++++|.+.. .+..+++| +.|.++.+.+ ..
T Consensus 78 ~N~l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 78 HNKLVKISCH--PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp SSCCCEEECC--CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred CCceeecCcc--ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccc
Confidence 9999999977 89999999999997 66642 3559999999999999998864 57778888 9999888877 55
Q ss_pred CCCccCcccc----eecccccccccccccccccccCCCcceEEEeeCCCcccccccccccccccccCcccccCCCccccc
Q 002939 492 DPSFVFPRLT----ILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSL 567 (864)
Q Consensus 492 ~~~~~~~~L~----~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (864)
.....++.++ .+++.+.... +.........+++|+.+++++|............
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--------------------- 212 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEF-HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI--------------------- 212 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCC-CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHH---------------------
T ss_pred cccccccccccceEEEEeccCcch-hhhhhhhhhcccceeeccccccccccccceeecc---------------------
Confidence 4445555544 3344443222 2223333456788888888886421111000000
Q ss_pred cchhhhcCCcceeecccccccccccccccCcccccCccEEEeecCCcc-ccchhHH----HHcccccEEEEEcccccccc
Q 002939 568 FLVEKVLPNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSE-VLAPDLL----ERFHNLVNLELADGSYKELF 642 (864)
Q Consensus 568 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~-~~~~~~~----~~l~~L~~L~l~~~~l~~~~ 642 (864)
......+++|+.|++++|.-......+..+....++|++|++++|.+. ..|...+ +.+++|+.++++.|.+ .++
T Consensus 213 ~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p 291 (520)
T 2z7x_B 213 LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFP 291 (520)
T ss_dssp HHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSC
T ss_pred hhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecc
Confidence 001123789999999988421111111111112468999999999888 4444322 7899999999998887 433
Q ss_pred ccccchhhhcccc---cccceeecCCCcCccccccccccccccccccCccEEEeeccccccc-ccCCccccCCccEEEEe
Q 002939 643 SNEGQVEKLVGKL---ARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKN-LLPSSASFRCLTKLSVW 718 (864)
Q Consensus 643 ~~~~~l~~~~~~l---~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~L~~L~l~ 718 (864)
. ..+..+ ++|+.|+++++. +..+ .....+++|++|++++| .+++ .+..+..+++|++|+++
T Consensus 292 ~------~~~~~~~~~~~L~~L~l~~n~-l~~~-------~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~ 356 (520)
T 2z7x_B 292 Q------SYIYEIFSNMNIKNFTVSGTR-MVHM-------LCPSKISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQ 356 (520)
T ss_dssp T------HHHHHHHHTCCCSEEEEESSC-CCCC-------CCCSSCCCCCEEECCSS-CCCTTTTTTCCCCSSCCEEECC
T ss_pred h------hhhhcccccCceeEEEcCCCc-cccc-------cchhhCCcccEEEeECC-ccChhhhhhhccCCCCCEEEcc
Confidence 1 122222 579999999953 4433 11246899999999995 5555 56667899999999999
Q ss_pred cCcCceeeec-hhhhhhhccccEEEecCccchHHhhhccccccCcceeeccccCeeecCccccccc-cccCCceeec-Cc
Q 002939 719 CCEQLINLVT-SSAAKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRLQSLTT-FCSANYTFKF-PS 795 (864)
Q Consensus 719 ~c~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~-l~~~~~~~~~-~~ 795 (864)
+| ++..++. +..+..+++|++|++++|.....++...+.. +++|+.|++++| .++. ++. .+ ++
T Consensus 357 ~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~-------l~~L~~L~Ls~N-~l~~~~~~-----~l~~~ 422 (520)
T 2z7x_B 357 MN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW-------TKSLLSLNMSSN-ILTDTIFR-----CLPPR 422 (520)
T ss_dssp SS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC-------CTTCCEEECCSS-CCCGGGGG-----SCCTT
T ss_pred CC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc-------CccCCEEECcCC-CCCcchhh-----hhccc
Confidence 86 5665421 3457889999999999976544366444443 799999999995 5543 332 22 79
Q ss_pred cceeecccCCCccccccCcccCCccceEeeCCc
Q 002939 796 LCYLSVSACPKMKIFCRGVLSAPRLEKVRLNDQ 828 (864)
Q Consensus 796 L~~L~i~~C~~l~~lp~~~~~~~~L~~l~l~~~ 828 (864)
|++|++++|. ++.+|..+..+++|++|+++++
T Consensus 423 L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 423 IKVLDLHSNK-IKSIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp CCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS
T ss_pred CCEEECCCCc-ccccchhhhcCCCCCEEECCCC
Confidence 9999999985 7799998889999999999954
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=2.3e-29 Score=290.86 Aligned_cols=401 Identities=13% Similarity=0.141 Sum_probs=194.0
Q ss_pred CCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccc---------------------------------
Q 002939 338 PQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIR--------------------------------- 384 (864)
Q Consensus 338 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~--------------------------------- 384 (864)
.+++.|++.++.. .+.+|.. ++++++|++|+|++|.+..-+..++
T Consensus 81 ~~V~~L~L~~~~l-~g~lp~~-l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~ 158 (636)
T 4eco_A 81 GRVTGLSLEGFGA-SGRVPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158 (636)
T ss_dssp CCEEEEECTTSCC-EEEECGG-GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEEEEecCccc-CCcCChH-HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhH
Confidence 4788888887544 3467754 4889999999999986521110000
Q ss_pred --------------------cCCCccEEEec--Ccccccc-ccccccCcccEEeCCCCCCcc------------------
Q 002939 385 --------------------LLTDLRTLCLD--GCKLEDI-RIIGELKELEILSLQGCDIEH------------------ 423 (864)
Q Consensus 385 --------------------~l~~L~~L~L~--~~~l~~l-~~~~~l~~L~~L~l~~~~i~~------------------ 423 (864)
....++.+.+. +|+++++ ..++++++|++|++++|.++.
T Consensus 159 ~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp CHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 00011111111 2344444 346666777777777776665
Q ss_pred Cchhhc--cccccceecccccccccccChhhhhcCcccceeeccccc-ccc-----ccccC------CcchhhhcCCCCc
Q 002939 424 LPREIG--QLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCC-IKW-----EISNC------SLLEEIVGKEGGV 489 (864)
Q Consensus 424 lp~~~~--~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~-----~~~~~------~~L~~L~~~~~~~ 489 (864)
+|..++ ++++|++|++++|.....+| ..++++++|++|++++|. +.. .++.+ ++|+.|+++.+.+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 666666 67777777777765344444 336667777777776665 332 22222 3444444444433
Q ss_pred cCCCCccCcccceecccccccccccccccccccCCCcceEEEeeCCCcccccccccccccccccCcccccCCCccccccc
Q 002939 490 EADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFL 569 (864)
Q Consensus 490 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (864)
...+. ......+++|+.|++++|..-..+| .+.
T Consensus 318 ~~ip~----------------------~~~l~~l~~L~~L~L~~N~l~g~ip-~~~------------------------ 350 (636)
T 4eco_A 318 KTFPV----------------------ETSLQKMKKLGMLECLYNQLEGKLP-AFG------------------------ 350 (636)
T ss_dssp SSCCC----------------------HHHHTTCTTCCEEECCSCCCEEECC-CCE------------------------
T ss_pred CccCc----------------------hhhhccCCCCCEEeCcCCcCccchh-hhC------------------------
Confidence 32221 0012233444444444433221222 111
Q ss_pred hhhhcCCcceeecccccccccccccccCccc--ccC-ccEEEeecCCccccchhHHHH--cccccEEEEEcccccccccc
Q 002939 570 VEKVLPNLEELRLSNKKDITKIWQGQFPDHL--LNK-LKVLAIENDKSEVLAPDLLER--FHNLVNLELADGSYKELFSN 644 (864)
Q Consensus 570 ~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~--~~~-L~~L~l~~~~~~~~~~~~~~~--l~~L~~L~l~~~~l~~~~~~ 644 (864)
.+++|++|++++|. +. .+|... +++ |++|++++|.+..+|.. +.. +++|+.|++++|.+.
T Consensus 351 ---~l~~L~~L~L~~N~-l~-----~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~-~~~~~l~~L~~L~Ls~N~l~----- 415 (636)
T 4eco_A 351 ---SEIKLASLNLAYNQ-IT-----EIPANFCGFTEQVENLSFAHNKLKYIPNI-FDAKSVSVMSAIDFSYNEIG----- 415 (636)
T ss_dssp ---EEEEESEEECCSSE-EE-----ECCTTSEEECTTCCEEECCSSCCSSCCSC-CCTTCSSCEEEEECCSSCTT-----
T ss_pred ---CCCCCCEEECCCCc-cc-----cccHhhhhhcccCcEEEccCCcCcccchh-hhhcccCccCEEECcCCcCC-----
Confidence 14455555555552 11 222211 344 55555555555544432 222 225555555555553
Q ss_pred ccchhhhcc-------cccccceeecCCCcCccccccccccccccccccCccEEEeecccccccccCCccc--------c
Q 002939 645 EGQVEKLVG-------KLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKNLLPSSAS--------F 709 (864)
Q Consensus 645 ~~~l~~~~~-------~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--------~ 709 (864)
+..|..+. .+++|+.|++++ +.++.+ .......+++|++|++++ +.++.++..... +
T Consensus 416 -~~~p~~l~~~~~~~~~~~~L~~L~Ls~-N~l~~l-----p~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~~~~~~~~l 487 (636)
T 4eco_A 416 -SVDGKNFDPLDPTPFKGINVSSINLSN-NQISKF-----PKELFSTGSPLSSINLMG-NMLTEIPKNSLKDENENFKNT 487 (636)
T ss_dssp -TTTTCSSCTTCSSCCCCCCEEEEECCS-SCCCSC-----CTHHHHTTCCCSEEECCS-SCCSBCCSSSSEETTEECTTG
T ss_pred -CcchhhhcccccccccCCCCCEEECcC-CccCcC-----CHHHHccCCCCCEEECCC-CCCCCcCHHHhcccccccccc
Confidence 22333333 445555566655 233333 111122345566666655 344444433221 1
Q ss_pred CCccEEEEecCcCceeeechhhhh--hhccccEEEecCccchHHhhhccccccCcceeeccccCeeecCcc------ccc
Q 002939 710 RCLTKLSVWCCEQLINLVTSSAAK--NLVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRL------QSL 781 (864)
Q Consensus 710 ~~L~~L~l~~c~~l~~~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c------~~L 781 (864)
++|++|++++| +++.++ ..+. .+++|++|++++|.. +.+| .... .+++|+.|+++++ .-.
T Consensus 488 ~~L~~L~Ls~N-~l~~lp--~~~~~~~l~~L~~L~Ls~N~l-~~ip-~~~~-------~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 488 YLLTSIDLRFN-KLTKLS--DDFRATTLPYLVGIDLSYNSF-SKFP-TQPL-------NSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp GGCCEEECCSS-CCCBCC--GGGSTTTCTTCCEEECCSSCC-SSCC-CGGG-------GCSSCCEEECCSCBCTTCCBCC
T ss_pred CCccEEECcCC-cCCccC--hhhhhccCCCcCEEECCCCCC-CCcC-hhhh-------cCCCCCEEECCCCcccccCccc
Confidence 15666666653 444432 2232 556666666666432 2233 2222 2556666666431 122
Q ss_pred cccccCCceeecCccceeecccCCCccccccCcccCCccceEeeCCc
Q 002939 782 TTFCSANYTFKFPSLCYLSVSACPKMKIFCRGVLSAPRLEKVRLNDQ 828 (864)
Q Consensus 782 ~~l~~~~~~~~~~~L~~L~i~~C~~l~~lp~~~~~~~~L~~l~l~~~ 828 (864)
..+| ..+.++++|++|++++|.. +.+|..+. ++|++|+++++
T Consensus 556 ~~~p--~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N 597 (636)
T 4eco_A 556 REWP--EGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDN 597 (636)
T ss_dssp CCCC--TTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSC
T ss_pred ccCh--HHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCC
Confidence 2333 2344566666666666553 66665543 56666666643
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=5e-29 Score=291.85 Aligned_cols=297 Identities=16% Similarity=0.180 Sum_probs=140.6
Q ss_pred ccccc-ccccccCcccEEeCCCCCCcc------------------Cchhhc--cccccceecccccccccccChhhhhcC
Q 002939 398 KLEDI-RIIGELKELEILSLQGCDIEH------------------LPREIG--QLTQLKLLDLSYCFELKVIAPNVLSNL 456 (864)
Q Consensus 398 ~l~~l-~~~~~l~~L~~L~l~~~~i~~------------------lp~~~~--~l~~L~~L~l~~~~~l~~~~~~~l~~l 456 (864)
.++.+ ..++++++|++|+|++|+++. +|..++ .+++|++|++++|.....+| ..++++
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L 514 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDL 514 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGC
T ss_pred cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHHhCC
Confidence 34434 346666666666666666665 666655 66666666666665444444 336666
Q ss_pred cccceeeccccc-cc-----cccccCC-------cchhhhcCCCCccCCCC----ccCcccceecccccccccccccccc
Q 002939 457 SQLEELYMATCC-IK-----WEISNCS-------LLEEIVGKEGGVEADPS----FVFPRLTILQLCYLPELRAFYPGIH 519 (864)
Q Consensus 457 ~~L~~L~l~~~~-~~-----~~~~~~~-------~L~~L~~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~~~~~ 519 (864)
++|++|++++|. +. ..++.++ +|+.|+++.+.+...+. ..+++|+.|+++++. +..++ .
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp---~ 590 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE---A 590 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC---C
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch---h
Confidence 666666666665 32 2222222 44444444444443322 234555555555532 22222 2
Q ss_pred cccCCCcceEEEeeCCCcccccccccccccccccCcccccCCCccccccchhhhcCC-cceeecccccccccccccccCc
Q 002939 520 TLECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPN-LEELRLSNKKDITKIWQGQFPD 598 (864)
Q Consensus 520 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~p~ 598 (864)
...+++|+.|++++|..- .+|..+. .+++ |+.|++++|. +. .+|.
T Consensus 591 ~~~L~~L~~L~Ls~N~l~-~lp~~l~---------------------------~l~~~L~~L~Ls~N~-L~-----~lp~ 636 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE-EIPEDFC---------------------------AFTDQVEGLGFSHNK-LK-----YIPN 636 (876)
T ss_dssp CCTTSEESEEECCSSCCS-CCCTTSC---------------------------EECTTCCEEECCSSC-CC-----SCCS
T ss_pred hcCCCcceEEECcCCccc-cchHHHh---------------------------hccccCCEEECcCCC-CC-----cCch
Confidence 344555666666554322 3322111 1445 6666666663 22 1222
Q ss_pred cc----ccCccEEEeecCCccccchhH---HH--HcccccEEEEEccccccccccccchhhh-cccccccceeecCCCcC
Q 002939 599 HL----LNKLKVLAIENDKSEVLAPDL---LE--RFHNLVNLELADGSYKELFSNEGQVEKL-VGKLARIKCLQLSGLND 668 (864)
Q Consensus 599 ~~----~~~L~~L~l~~~~~~~~~~~~---~~--~l~~L~~L~l~~~~l~~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~ 668 (864)
.. .++|+.|++++|.+...++.. +. .+++|+.|++++|.++.+ |.. +..+++|+.|+|++| .
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~l-------p~~~~~~l~~L~~L~Ls~N-~ 708 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF-------PTELFATGSPISTIILSNN-L 708 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSC-------CHHHHHTTCCCSEEECCSC-C
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCcc-------CHHHHccCCCCCEEECCCC-c
Confidence 11 223666666666554433211 11 223566666666655322 222 234556666666652 4
Q ss_pred cccccccccccc--ccccccCccEEEeecccccccccCCcc--ccCCccEEEEecCcCceeeechhhhhhhccccEEEec
Q 002939 669 LKHLWLWEENSK--LNMIFQNLETLDISFCRNLKNLLPSSA--SFRCLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVD 744 (864)
Q Consensus 669 l~~l~~~~~~~~--~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 744 (864)
++.++.+..... ....+++|++|++++| .++.++..+. .+++|+.|++++| .+..+ +..+..+++|+.|+++
T Consensus 709 L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~l--p~~l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSF--PTQPLNSSQLKAFGIR 784 (876)
T ss_dssp CSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSC--CCGGGGCTTCCEEECC
T ss_pred CCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCcc--chhhhcCCCCCEEECC
Confidence 444322111100 0112235555666553 4445544443 5555555555543 34443 2234455555555555
Q ss_pred C
Q 002939 745 G 745 (864)
Q Consensus 745 ~ 745 (864)
+
T Consensus 785 ~ 785 (876)
T 4ecn_A 785 H 785 (876)
T ss_dssp C
T ss_pred C
Confidence 4
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=5e-28 Score=276.93 Aligned_cols=433 Identities=15% Similarity=0.127 Sum_probs=292.6
Q ss_pred cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCC-cccccCCCccEEEecCcccccc--ccccccCccc
Q 002939 336 ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLP-SSIRLLTDLRTLCLDGCKLEDI--RIIGELKELE 412 (864)
Q Consensus 336 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~l--~~~~~l~~L~ 412 (864)
.+...++++++++... .+|..+ .++|++|++++|.+..+| ..|.++++|++|+|++|.++.+ ..++++++|+
T Consensus 29 ~~~~~~~l~ls~~~L~--~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 29 SNELESMVDYSNRNLT--HVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp ----CCEEECTTSCCC--SCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred ccCCCcEEEcCCCCCc--cCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence 4455688999875544 588766 389999999999999886 6899999999999999999987 4599999999
Q ss_pred EEeCCCCCCccCchhhccccccceecccccccccccC-hhhhhcCcccceeecccccccc-ccccCCcc--hhhhcCCCC
Q 002939 413 ILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIA-PNVLSNLSQLEELYMATCCIKW-EISNCSLL--EEIVGKEGG 488 (864)
Q Consensus 413 ~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~L--~~L~~~~~~ 488 (864)
+|++++|+++.+|.. .+++|++|++++|. +..++ +..++++++|++|++++|.+.. .+..+++| +.|+++.+.
T Consensus 104 ~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 104 YLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp EEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESS
T ss_pred EEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeeccc
Confidence 999999999999977 89999999999997 77765 3569999999999999998764 45666666 888888887
Q ss_pred c--cCCCCccCcccc--ee--cccccccccccccccccccCCCcceEEEeeCCC-cccccccccccccccccCcccccCC
Q 002939 489 V--EADPSFVFPRLT--IL--QLCYLPELRAFYPGIHTLECPMLTKLKVSCCDK-LKCFSSELYSLHENNEEGQLIDVPV 561 (864)
Q Consensus 489 ~--~~~~~~~~~~L~--~L--~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~-l~~~~~~~~~~~~~~~~~~~~~~~~ 561 (864)
+ .......++.+. .+ ++++.. +...........+++|+.++++++.. ...++..
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~------------------ 241 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNS-LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF------------------ 241 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSS-CCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH------------------
T ss_pred ccccccCcccccccCcceEEEEecCcc-chhhhhhhcccccceEEEecccccccccchHHHH------------------
Confidence 7 554444454433 22 222211 11112222233456677777776431 0111000
Q ss_pred CccccccchhhhcCCcceeecccccccccccccccCcccccCccEEEeecCCcc-ccchhHH----HHcccccEEEEEcc
Q 002939 562 PAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSE-VLAPDLL----ERFHNLVNLELADG 636 (864)
Q Consensus 562 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~-~~~~~~~----~~l~~L~~L~l~~~ 636 (864)
......+++|+.|++.++.-......+..+....++|++|++++|.+. .+|...+ ..++.|+.+++..+
T Consensus 242 ------~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~ 315 (562)
T 3a79_B 242 ------LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ 315 (562)
T ss_dssp ------HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEEC
T ss_pred ------HHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccc
Confidence 001123677777887776411111111111112458999999988887 4444322 34455555555545
Q ss_pred ccccccccccchhhhcccccccceeecCCCcCccccccccccccccccccCccEEEeeccccccc-ccCCccccCCccEE
Q 002939 637 SYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKN-LLPSSASFRCLTKL 715 (864)
Q Consensus 637 ~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~L~~L 715 (864)
.+ .++. .....+-...+|+.|+++++. +..+ .....+++|++|++++| .+++ .+..+..+++|++|
T Consensus 316 ~~-~~p~---~~~~~~~~~~~L~~L~l~~n~-~~~~-------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 382 (562)
T 3a79_B 316 VF-LFSK---EALYSVFAEMNIKMLSISDTP-FIHM-------VCPPSPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTL 382 (562)
T ss_dssp CC-SSCH---HHHHHHHHTCCCSEEEEESSC-CCCC-------CCCSSCCCCCEEECCSS-CCCTTTTTTCCSCSSCCEE
T ss_pred ee-ecCh---hhhhhhhccCcceEEEccCCC-cccc-------cCccCCCCceEEECCCC-ccccchhhhhcccCCCCEE
Confidence 44 2211 111111122579999999953 4332 11246899999999995 5555 55667889999999
Q ss_pred EEecCcCceeeec-hhhhhhhccccEEEecCccchHHhhhccccccCcceeeccccCeeecCccccccccccCCceeec-
Q 002939 716 SVWCCEQLINLVT-SSAAKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFCSANYTFKF- 793 (864)
Q Consensus 716 ~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~- 793 (864)
+++++ .++.+.. +..+..+++|++|++++|..-..++...+. .+++|+.|++++| .++.... ..+
T Consensus 383 ~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-------~l~~L~~L~l~~n-~l~~~~~----~~l~ 449 (562)
T 3a79_B 383 ILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA-------WAESILVLNLSSN-MLTGSVF----RCLP 449 (562)
T ss_dssp ECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC-------CCTTCCEEECCSS-CCCGGGG----SSCC
T ss_pred ECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc-------CcccCCEEECCCC-CCCcchh----hhhc
Confidence 99985 6776532 345788999999999997644335544344 3799999999995 5654322 233
Q ss_pred CccceeecccCCCccccccCcccCCccceEeeCCc
Q 002939 794 PSLCYLSVSACPKMKIFCRGVLSAPRLEKVRLNDQ 828 (864)
Q Consensus 794 ~~L~~L~i~~C~~l~~lp~~~~~~~~L~~l~l~~~ 828 (864)
++|++|++++| .++.+|.+...+++|++|+++++
T Consensus 450 ~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 450 PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN 483 (562)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS
T ss_pred CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC
Confidence 69999999998 68899998888999999999843
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=7.1e-27 Score=273.19 Aligned_cols=474 Identities=19% Similarity=0.135 Sum_probs=297.7
Q ss_pred eEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCC-cccccCCCccEEEecCc
Q 002939 319 STISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLP-SSIRLLTDLRTLCLDGC 397 (864)
Q Consensus 319 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~ 397 (864)
++.+.++..++.||..+. +.++.|++++|... .++...|.++++|++|+|++|.++.+| ..|.++++|++|+|++|
T Consensus 34 ~~~~c~~~~l~~vP~~lp-~~~~~LdLs~N~i~--~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP-FSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp TEEECTTSCCSSCCSSSC-TTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCCcCccCCCCC-cCCCEEEeeCCCCC--CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 455667778889998774 48999999986554 688888999999999999999999885 46999999999999999
Q ss_pred ccccc--ccccccCcccEEeCCCCCCccCch-hhccccccceecccccccccccC-hhhhhcCcccceeecccccccc--
Q 002939 398 KLEDI--RIIGELKELEILSLQGCDIEHLPR-EIGQLTQLKLLDLSYCFELKVIA-PNVLSNLSQLEELYMATCCIKW-- 471 (864)
Q Consensus 398 ~l~~l--~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~-- 471 (864)
+++.+ ..|.++++|++|++++|+++.+|. .++.+++|++|++++|. +..++ +..++.+++|++|++++|.+..
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccc
Confidence 99988 358999999999999999998875 58999999999999997 65542 4558899999999999998754
Q ss_pred --ccccCCcch----hhhcCCCCccCCCCccCc--ccceecccccccccccccccccccCCCcceEEEeeCC--Cccccc
Q 002939 472 --EISNCSLLE----EIVGKEGGVEADPSFVFP--RLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCD--KLKCFS 541 (864)
Q Consensus 472 --~~~~~~~L~----~L~~~~~~~~~~~~~~~~--~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~--~l~~~~ 541 (864)
.+..+.+++ .++++.+.+...+...+. .+..+.+.+....... .......+..++...+.... ....+.
T Consensus 190 ~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~-~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 268 (635)
T 4g8a_A 190 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNV-MKTCIQGLAGLEVHRLVLGEFRNEGNLE 268 (635)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHH-HHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred cccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccc-cchhhcCCcccccccccccccccccccc
Confidence 333333333 234555555443333333 2333443321110000 00011122333333222111 100000
Q ss_pred c----cccccccccccCcccccCCCccccccch----------------------hhhcCCcceeecccccccccccccc
Q 002939 542 S----ELYSLHENNEEGQLIDVPVPAQQSLFLV----------------------EKVLPNLEELRLSNKKDITKIWQGQ 595 (864)
Q Consensus 542 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~l~~L~~L~l~~~~~~~~~~~~~ 595 (864)
. .+.......................... ......|+.|++.+|. ...
T Consensus 269 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~~~ 342 (635)
T 4g8a_A 269 KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK------FGQ 342 (635)
T ss_dssp CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCE------ESS
T ss_pred cccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhccccc------ccC
Confidence 0 0000000000000000000000000001 1123445555555552 112
Q ss_pred cCcccccCccEEEeecCCccccchhHHHHcccccEEEEEccccccccccccchhhhcccccccceeecCCCcCccccccc
Q 002939 596 FPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLW 675 (864)
Q Consensus 596 ~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~ 675 (864)
++...++.|+.+.+.++.....+. ...+++|+.|+++.|.+... +..+.....+.+|+.|++..+. ...+
T Consensus 343 ~~~~~l~~L~~l~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~~----~~~~~~~~~~~~L~~L~~~~~~-~~~~--- 412 (635)
T 4g8a_A 343 FPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFK----GCCSQSDFGTISLKYLDLSFNG-VITM--- 412 (635)
T ss_dssp CCCCBCTTCCEEEEESCCSCCBCC--CCBCTTCCEEECCSSCCBEE----EECCHHHHSCSCCCEEECCSCS-EEEE---
T ss_pred cCcccchhhhhcccccccCCCCcc--cccccccccchhhccccccc----cccccchhhhhhhhhhhccccc-cccc---
Confidence 222235566666666655544433 23567777777776666432 2233444556677777777643 2222
Q ss_pred cccccccccccCccEEEeecccccccccC-CccccCCccEEEEecCcCceeeechhhhhhhccccEEEecCccchHHhhh
Q 002939 676 EENSKLNMIFQNLETLDISFCRNLKNLLP-SSASFRCLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDGCSKITELVV 754 (864)
Q Consensus 676 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 754 (864)
......+++|+.+++.+++.....+. .+..+++++.++++.+ .+.... +..+..+++|+.|++++|.....+.+
T Consensus 413 ---~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n-~l~~~~-~~~~~~~~~L~~L~Ls~N~~~~~~~~ 487 (635)
T 4g8a_A 413 ---SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLP 487 (635)
T ss_dssp ---CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS-CCEECC-TTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred ---cccccccccccchhhhhcccccccccccccccccccccccccc-cccccc-ccccccchhhhhhhhhhcccccccCc
Confidence 12234578889999888655444332 3467888999999864 555553 45677889999999999887776665
Q ss_pred ccccccCcceeeccccCeeecCccccccccccCCceeecCccceeecccCCCccccc-cCcccCCccceEeeCCc
Q 002939 755 AIEADEANEEIFFPKLESLDLNRLQSLTTFCSANYTFKFPSLCYLSVSACPKMKIFC-RGVLSAPRLEKVRLNDQ 828 (864)
Q Consensus 755 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~lp-~~~~~~~~L~~l~l~~~ 828 (864)
..+.. +++|+.|+|++ +.|+.+++. .+.++++|++|++++|. ++.++ ..+..+++|++|+++++
T Consensus 488 ~~~~~-------l~~L~~L~Ls~-N~L~~l~~~-~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 488 DIFTE-------LRNLTFLDLSQ-CQLEQLSPT-AFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLN 552 (635)
T ss_dssp SCCTT-------CTTCCEEECTT-SCCCEECTT-TTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTS
T ss_pred hhhhh-------ccccCEEECCC-CccCCcChH-HHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCC
Confidence 55554 89999999999 589988764 46789999999999975 66665 45777899999999943
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=4.5e-27 Score=262.18 Aligned_cols=347 Identities=21% Similarity=0.259 Sum_probs=202.8
Q ss_pred cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEecCccccccccccccCcccEEe
Q 002939 336 ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDIRIIGELKELEILS 415 (864)
Q Consensus 336 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l~~~~~l~~L~~L~ 415 (864)
.+++++.|.+.++... .++. +..+++|++|++++|.+..+|. +.++++|++|++++|.++.++.++++++|++|+
T Consensus 44 ~l~~l~~L~l~~~~i~--~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 118 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK--SIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLT 118 (466)
T ss_dssp HHHTCCEEECCSSCCC--CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred HhccccEEecCCCCCc--cCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEE
Confidence 3567888888765443 3443 5778889999999888888876 888888999999888888886688888899999
Q ss_pred CCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeeccccccc-cccccCCcchhhhcCCCCccCCCC
Q 002939 416 LQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIK-WEISNCSLLEEIVGKEGGVEADPS 494 (864)
Q Consensus 416 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~L~~L~~~~~~~~~~~~ 494 (864)
+++|.++.+|. +..+++|++|++++|. +..++. +.++++|++|+++++... ..+.+
T Consensus 119 L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~------------------- 175 (466)
T 1o6v_A 119 LFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGNQVTDLKPLAN------------------- 175 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEESCCCCGGGTT-------------------
T ss_pred CCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCCcccCchhhcc-------------------
Confidence 98888888775 7888888899888886 666653 788888888887532110 01223
Q ss_pred ccCcccceecccccccccccccccccccCCCcceEEEeeCCCcccccccccccccccccCcccccCCCccccccchhhhc
Q 002939 495 FVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVL 574 (864)
Q Consensus 495 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 574 (864)
+++|+.|+++++. +..+. ....+++|++|++++|..-...+ ...+
T Consensus 176 --l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n~l~~~~~-----------------------------~~~l 220 (466)
T 1o6v_A 176 --LTTLERLDISSNK-VSDIS---VLAKLTNLESLIATNNQISDITP-----------------------------LGIL 220 (466)
T ss_dssp --CTTCCEEECCSSC-CCCCG---GGGGCTTCSEEECCSSCCCCCGG-----------------------------GGGC
T ss_pred --CCCCCEEECcCCc-CCCCh---hhccCCCCCEEEecCCccccccc-----------------------------cccc
Confidence 3444444444432 11111 12344556666655543211111 0114
Q ss_pred CCcceeecccccccccccccccCcccccCccEEEeecCCccccchhHHHHcccccEEEEEccccccccccccchhhhccc
Q 002939 575 PNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSYKELFSNEGQVEKLVGK 654 (864)
Q Consensus 575 ~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~ 654 (864)
++|+.|++++|. +... -....+++|++|++++|.+...++ +..+++|+.|++++|.+..++ . +..
T Consensus 221 ~~L~~L~l~~n~-l~~~----~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-------~-~~~ 285 (466)
T 1o6v_A 221 TNLDELSLNGNQ-LKDI----GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS-------P-LAG 285 (466)
T ss_dssp TTCCEEECCSSC-CCCC----GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG-------G-GTT
T ss_pred CCCCEEECCCCC-cccc----hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccc-------c-ccC
Confidence 566666666663 2211 011125566666666666655554 455666666666666654321 1 445
Q ss_pred ccccceeecCCCcCccccccccccccccccccCccEEEeecccccccccCCccccCCccEEEEecCcCceeeechhhhhh
Q 002939 655 LARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKNLLPSSASFRCLTKLSVWCCEQLINLVTSSAAKN 734 (864)
Q Consensus 655 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 734 (864)
+++|+.|++++| .++.+ .....+++|+.|++++| .+.+.++ ...+++|++|++++| .+..+ ..+..
T Consensus 286 l~~L~~L~L~~n-~l~~~-------~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~---~~l~~ 351 (466)
T 1o6v_A 286 LTALTNLELNEN-QLEDI-------SPISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNN-KVSDV---SSLAN 351 (466)
T ss_dssp CTTCSEEECCSS-CCSCC-------GGGGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCC---GGGTT
T ss_pred CCccCeEEcCCC-cccCc-------hhhcCCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCC-ccCCc---hhhcc
Confidence 566666666663 33332 11344566666666663 4444433 445666666666654 44443 24455
Q ss_pred hccccEEEecCccchHHhhhccccccCcceeeccccCeeecCccccccccc
Q 002939 735 LVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFC 785 (864)
Q Consensus 735 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 785 (864)
+++|++|++++|.. ...++ .. .+++|+.|++++ +.++.+|
T Consensus 352 l~~L~~L~l~~n~l-~~~~~--~~-------~l~~L~~L~l~~-n~~~~~p 391 (466)
T 1o6v_A 352 LTNINWLSAGHNQI-SDLTP--LA-------NLTRITQLGLND-QAWTNAP 391 (466)
T ss_dssp CTTCCEEECCSSCC-CBCGG--GT-------TCTTCCEEECCC-EEEECCC
T ss_pred CCCCCEEeCCCCcc-Cccch--hh-------cCCCCCEEeccC-CcccCCc
Confidence 56666666666533 22221 11 255666666666 3444444
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=7.9e-27 Score=260.23 Aligned_cols=343 Identities=21% Similarity=0.245 Sum_probs=265.8
Q ss_pred hhhccceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEE
Q 002939 313 YLLKKCSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTL 392 (864)
Q Consensus 313 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L 392 (864)
..+.+++.|+++++.+..+|....+++|++|+++++... .++. |.++++|++|++++|.+..++. ++++++|++|
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~--~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT--DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC--CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccC--Cchh--hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 456799999999999999987668999999999986544 3454 7899999999999999998877 9999999999
Q ss_pred EecCccccccccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecccccccc-
Q 002939 393 CLDGCKLEDIRIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW- 471 (864)
Q Consensus 393 ~L~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~- 471 (864)
++++|.++.++.+.++++|++|++++|.+..+| .+..+++|++|+++++ +..+++ +.++++|++|++++|.+..
T Consensus 118 ~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 118 TLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp ECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred ECCCCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcCCCC
Confidence 999999999988999999999999999998887 4899999999999743 555554 8899999999999987643
Q ss_pred -ccccCCcchhhhcCCCCccCCCCccCcccceecccccccccccccccccccCCCcceEEEeeCCCcccccccccccccc
Q 002939 472 -EISNCSLLEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHEN 550 (864)
Q Consensus 472 -~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 550 (864)
.+.. +++|+.|+++++. +....+ ...+++|+.|++++|. +..++.
T Consensus 193 ~~l~~---------------------l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~-------- 238 (466)
T 1o6v_A 193 SVLAK---------------------LTNLESLIATNNQ-ISDITP---LGILTNLDELSLNGNQ-LKDIGT-------- 238 (466)
T ss_dssp GGGGG---------------------CTTCSEEECCSSC-CCCCGG---GGGCTTCCEEECCSSC-CCCCGG--------
T ss_pred hhhcc---------------------CCCCCEEEecCCc-cccccc---ccccCCCCEEECCCCC-cccchh--------
Confidence 2333 3555555555532 222222 3346778888887764 222210
Q ss_pred cccCcccccCCCccccccchhhhcCCcceeecccccccccccccccCcccccCccEEEeecCCccccchhHHHHcccccE
Q 002939 551 NEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVN 630 (864)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 630 (864)
...+++|+.|++++|. + .+..+...+++|++|++++|.+...++ +..+++|+.
T Consensus 239 --------------------l~~l~~L~~L~l~~n~-l----~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 291 (466)
T 1o6v_A 239 --------------------LASLTNLTDLDLANNQ-I----SNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTN 291 (466)
T ss_dssp --------------------GGGCTTCSEEECCSSC-C----CCCGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred --------------------hhcCCCCCEEECCCCc-c----ccchhhhcCCCCCEEECCCCccCcccc--ccCCCccCe
Confidence 1137889999999985 2 222333447899999999999988877 678999999
Q ss_pred EEEEccccccccccccchhhhcccccccceeecCCCcCccccccccccccccccccCccEEEeecccccccccCCccccC
Q 002939 631 LELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKNLLPSSASFR 710 (864)
Q Consensus 631 L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 710 (864)
|++++|.++.+++ +..+++|+.|++++| .++.+ .....+++|++|++++| .++++ +.+..++
T Consensus 292 L~L~~n~l~~~~~--------~~~l~~L~~L~L~~n-~l~~~-------~~~~~l~~L~~L~l~~n-~l~~~-~~l~~l~ 353 (466)
T 1o6v_A 292 LELNENQLEDISP--------ISNLKNLTYLTLYFN-NISDI-------SPVSSLTKLQRLFFYNN-KVSDV-SSLANLT 353 (466)
T ss_dssp EECCSSCCSCCGG--------GGGCTTCSEEECCSS-CCSCC-------GGGGGCTTCCEEECCSS-CCCCC-GGGTTCT
T ss_pred EEcCCCcccCchh--------hcCCCCCCEEECcCC-cCCCc-------hhhccCccCCEeECCCC-ccCCc-hhhccCC
Confidence 9999998864322 667899999999995 45543 12457899999999995 67776 4567899
Q ss_pred CccEEEEecCcCceeeechhhhhhhccccEEEecCccc
Q 002939 711 CLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDGCSK 748 (864)
Q Consensus 711 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 748 (864)
+|+.|++++| .+.+..+ +..+++|++|++++|+.
T Consensus 354 ~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 354 NINWLSAGHN-QISDLTP---LANLTRITQLGLNDQAW 387 (466)
T ss_dssp TCCEEECCSS-CCCBCGG---GTTCTTCCEEECCCEEE
T ss_pred CCCEEeCCCC-ccCccch---hhcCCCCCEEeccCCcc
Confidence 9999999986 5666642 78899999999999754
No 28
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.95 E-value=1.3e-27 Score=271.02 Aligned_cols=268 Identities=15% Similarity=0.143 Sum_probs=183.7
Q ss_pred hHHHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCe-EEEEEccCCCChHHHHHHHHHHhCCccccchh
Q 002939 3 TLKNVQNALLD-PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDE-VVFAEVSETPDIGKIQGELADQLGMKFSQGEI 80 (864)
Q Consensus 3 ~~~~i~~~l~~-~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 80 (864)
++++|.++|.+ ++.++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..+++.++......
T Consensus 136 eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~-- 213 (1221)
T 1vt4_I 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW-- 213 (1221)
T ss_dssp HHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSS--
T ss_pred HHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCccc--
Confidence 57788888875 56899999999999999999999998777777976 999999999998888888887653211100
Q ss_pred hhhccccccCCCChhhHHHHHHHHHh--cCCeEEEEEcCCCchhccccccCCCCCCCCCcEEEEEeCChHHHhhcC-Cce
Q 002939 81 ADQRGMKFSQESDVPGRARKLYARLQ--KENKILVILDNIWEDLDLEKVGVPSGNDWRGCKVLLTARDRHVLGSIG-SKT 157 (864)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~~~~~-~~~ 157 (864)
....+.......+.....+.+.+.+. .++|+||||||||+.++|+.+. .||+||||||++.++..+. ...
T Consensus 214 ~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~g~~v 286 (1221)
T 1vt4_I 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLSAATT 286 (1221)
T ss_dssp TTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHHHHSS
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcCCCeE
Confidence 00000000000112233445555542 3799999999999998888762 4899999999999886444 345
Q ss_pred EEcC------CCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHHHHHhccCC-ChhHHHH--------H
Q 002939 158 FQID------VLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTLAKALRNKS-CVSAWKD--------A 222 (864)
Q Consensus 158 ~~l~------~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~~~~l~~~~-~~~~w~~--------~ 222 (864)
|+++ +|+.+||++||.+..+.. ..+...+ .|+|+|||++++|+.++.+. ..+.|+. +
T Consensus 287 y~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aa 358 (1221)
T 1vt4_I 287 THISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358 (1221)
T ss_dssp CEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHH
T ss_pred EEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHH
Confidence 6677 999999999999986432 1223333 49999999999999999873 4567753 2
Q ss_pred HHHhcCCCCCCc-hHHHH--Hhhhccc-h-HHHH--------HHHHHhHHHHHHHhcccccccCCceEEecHHHHHHH
Q 002939 223 LRQLKRPSPGNF-DGVLA--KTLEGID-T-VEEA--------RDKVCTSVQELKDACLLLDGENSDWFSMHDVVRDVA 287 (864)
Q Consensus 223 l~~l~~~~~~~~-~~~l~--~~~~~~~-~-~~~~--------~~~~~~~~~~L~~~~l~~~~~~~~~~~mh~li~~~~ 287 (864)
++......+... ..+|+ +.|++.. . .+.+ ++.+..++++|+++||++......+|+|||++++++
T Consensus 359 LelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 221111223344 55554 3333211 1 1111 124667999999999998755567999999999865
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=2.5e-26 Score=256.31 Aligned_cols=133 Identities=20% Similarity=0.214 Sum_probs=86.2
Q ss_pred ccCccEEEeecCCccccchhHHHHcccccEEEEEccccccccccccchhhhcccccccceeecCCCcCcccccccccccc
Q 002939 601 LNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSK 680 (864)
Q Consensus 601 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 680 (864)
.++|++|++++|.+...++..++.+++|++|++++|.++. ..|..+..+++|+.|++++| .++.+ ...
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~N-~l~~~-----~~~ 341 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK------IDDNAFWGLTHLLKLNLSQN-FLGSI-----DSR 341 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE------ECTTTTTTCTTCCEEECCSS-CCCEE-----CGG
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc------cChhHhcCcccCCEEECCCC-ccCCc-----Chh
Confidence 3577778887777777777667777888888888777743 23445667777888888774 44443 222
Q ss_pred ccccccCccEEEeecccccccc-cCCccccCCccEEEEecCcCceeeechhhhhhhccccEEEecCccc
Q 002939 681 LNMIFQNLETLDISFCRNLKNL-LPSSASFRCLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDGCSK 748 (864)
Q Consensus 681 ~~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 748 (864)
....+++|++|++++| .++.+ +..+..+++|++|+++++ .++.++ +..+..+++|++|++++|+.
T Consensus 342 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 342 MFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVP-DGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp GGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSCB
T ss_pred HhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCC-HhHhccCCcccEEEccCCCc
Confidence 3445677777777773 45554 334566777777777763 566553 34456677777777776543
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=9.3e-27 Score=259.77 Aligned_cols=364 Identities=18% Similarity=0.244 Sum_probs=234.7
Q ss_pred hhccceEEEeecCCccCCC-CCC-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC-CcccccCCCcc
Q 002939 314 LLKKCSTISLHGNNISEIP-QGW-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLR 390 (864)
Q Consensus 314 ~~~~l~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~ 390 (864)
.++++++|++++|.++.++ ..+ .+++|++|++.++... ..++...|.++++|++|++++|.+..+ |..|+++++|+
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~-~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 106 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG-LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT-CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCC
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCccc-ceECcccccccccCCEEeCCCCccCccChhhccCcccCC
Confidence 4467788888888777653 333 7777888888764332 245566677788888888888877755 66777788888
Q ss_pred EEEecCccccc--ccc--ccccCcccEEeCCCCCCccC-chh-hccccccceecccccccccccChhhhhcC--ccccee
Q 002939 391 TLCLDGCKLED--IRI--IGELKELEILSLQGCDIEHL-PRE-IGQLTQLKLLDLSYCFELKVIAPNVLSNL--SQLEEL 462 (864)
Q Consensus 391 ~L~L~~~~l~~--l~~--~~~l~~L~~L~l~~~~i~~l-p~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l--~~L~~L 462 (864)
+|++++|.+++ +.. ++++++|++|++++|.++.+ |.. +..+++|++|++++|. +...++..+.++ .+|+.|
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEE
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhcccccccccc
Confidence 88888887775 233 77778888888888877755 444 6777888888888775 666555556555 567777
Q ss_pred eccccccccccccCCcchhhhcCCCCccCCCCccCcccceeccccccccccccccc-ccccCCCcceEEEeeCCCccccc
Q 002939 463 YMATCCIKWEISNCSLLEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGI-HTLECPMLTKLKVSCCDKLKCFS 541 (864)
Q Consensus 463 ~l~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~ 541 (864)
++++|.+...-...-... .......+++|+.|+++++.-....+... .....++|+.|++++|.......
T Consensus 186 ~l~~n~l~~~~~~~~~~~---------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 256 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWE---------KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256 (455)
T ss_dssp ECTTCBCTTCSTTCTTHH---------HHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred ccccCcccccchhhcccc---------ccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc
Confidence 777766432100000000 00001123567777776643211111100 01123667777777664332210
Q ss_pred ccccccccccccCcccccCCCccccccchhhhcCCcceeecccccccccccccccCcc--cccCccEEEeecCCccccch
Q 002939 542 SELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDH--LLNKLKVLAIENDKSEVLAP 619 (864)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~--~~~~L~~L~l~~~~~~~~~~ 619 (864)
. ...+. ............++|+.|++++|. +. +..|.. .+++|++|++++|.+...++
T Consensus 257 ~-~~~~~--------------~~~~~~~~~~~~~~L~~L~l~~n~-l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 316 (455)
T 3v47_A 257 G-HTNFK--------------DPDNFTFKGLEASGVKTCDLSKSK-IF----ALLKSVFSHFTDLEQLTLAQNEINKIDD 316 (455)
T ss_dssp T-CCSSC--------------CCCTTTTGGGTTSCCCEEECCSSC-CC----EECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred c-hhhhc--------------cCcccccccccccCceEEEecCcc-cc----ccchhhcccCCCCCEEECCCCcccccCh
Confidence 0 00000 000000111125789999999995 33 323322 27899999999999999988
Q ss_pred hHHHHcccccEEEEEccccccccccccchhhhcccccccceeecCCCcCccccccccccccccccccCccEEEeeccccc
Q 002939 620 DLLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNL 699 (864)
Q Consensus 620 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l 699 (864)
..+..+++|++|++++|.++. ..|..+..+++|+.|++++| .++.+ .+.....+++|++|++++ +.+
T Consensus 317 ~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~Ls~N-~l~~~-----~~~~~~~l~~L~~L~L~~-N~l 383 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQNFLGS------IDSRMFENLDKLEVLDLSYN-HIRAL-----GDQSFLGLPNLKELALDT-NQL 383 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCCE------ECGGGGTTCTTCCEEECCSS-CCCEE-----CTTTTTTCTTCCEEECCS-SCC
T ss_pred hHhcCcccCCEEECCCCccCC------cChhHhcCcccCCEEECCCC-ccccc-----ChhhccccccccEEECCC-Ccc
Confidence 888999999999999999953 33566888999999999995 55554 233456689999999999 678
Q ss_pred ccccCCc-cccCCccEEEEecCc
Q 002939 700 KNLLPSS-ASFRCLTKLSVWCCE 721 (864)
Q Consensus 700 ~~~~~~~-~~~~~L~~L~l~~c~ 721 (864)
+++++.. ..+++|++|++++++
T Consensus 384 ~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 384 KSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCHhHhccCCcccEEEccCCC
Confidence 8877654 789999999999864
No 31
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.94 E-value=2.9e-26 Score=289.40 Aligned_cols=273 Identities=22% Similarity=0.341 Sum_probs=197.5
Q ss_pred chHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhhh-cc-CCCeEEEEEccCCCC--hHHHHHHHHHHhCCcc
Q 002939 2 STLKNVQNALL--DPDISIIGMYGMGGVGKTTLVKEVARRAKK-DM-LFDEVVFAEVSETPD--IGKIQGELADQLGMKF 75 (864)
Q Consensus 2 ~~~~~i~~~l~--~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~-~~-~f~~~~~v~~~~~~~--~~~~~~~i~~~l~~~~ 75 (864)
.++++|.++|. +++.++|+|+||||+||||||+++|++... .. +++.++|++++...+ ....+..++..+....
T Consensus 131 ~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (1249)
T 3sfz_A 131 KLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEE 210 (1249)
T ss_dssp HHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhc
Confidence 46788888885 467899999999999999999999988643 33 457899999998644 3444666777775432
Q ss_pred ccchhhhhccccccCCCChhhHHHHHHHHHhc-CCeEEEEEcCCCchhccccccCCCCCCCCCcEEEEEeCChHHHhhc-
Q 002939 76 SQGEIADQRGMKFSQESDVPGRARKLYARLQK-ENKILVILDNIWEDLDLEKVGVPSGNDWRGCKVLLTARDRHVLGSI- 153 (864)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~~~~- 153 (864)
... .....+.....+.+...+.. ++|+||||||||+..+|+.+ .+|++||||||++.++..+
T Consensus 211 ~~~---------~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~ 274 (1249)
T 3sfz_A 211 SFS---------QRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVM 274 (1249)
T ss_dssp TTC---------SSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCC
T ss_pred ccc---------cCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhc
Confidence 200 00123445556666666642 34999999999999888765 3588999999999988543
Q ss_pred C-CceEEcCC-CCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHHHHHhccCCChhHHHHHHHHhcCCCC
Q 002939 154 G-SKTFQIDV-LNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTLAKALRNKSCVSAWKDALRQLKRPSP 231 (864)
Q Consensus 154 ~-~~~~~l~~-L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~~~~l~~~~~~~~w~~~l~~l~~~~~ 231 (864)
+ ...++++. |+++|++++|...++.. .+...+.+.+|+++|+|+|||++++|++++.+. ..|+.+++.+.....
T Consensus 275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~ 350 (1249)
T 3sfz_A 275 GPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQF 350 (1249)
T ss_dssp SCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCC
T ss_pred CCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhh
Confidence 3 67899996 99999999999988432 344556789999999999999999999999864 468888888765432
Q ss_pred CCch-----------H---------------HHH--Hhhhccc--hHHH-------HHHHHHhHHHHHHHhcccccccCC
Q 002939 232 GNFD-----------G---------------VLA--KTLEGID--TVEE-------ARDKVCTSVQELKDACLLLDGENS 274 (864)
Q Consensus 232 ~~~~-----------~---------------~l~--~~~~~~~--~~~~-------~~~~~~~~~~~L~~~~l~~~~~~~ 274 (864)
..+. . +|+ +.|++.. ..+. .++.+..++++|++++|++.....
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~ 430 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNG 430 (1249)
T ss_dssp CCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESS
T ss_pred hhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCC
Confidence 2211 1 222 3343221 1111 135567799999999999855433
Q ss_pred c--eEEecHHHHHHHHHHhccc
Q 002939 275 D--WFSMHDVVRDVAISIASRD 294 (864)
Q Consensus 275 ~--~~~mh~li~~~~~~~~~~e 294 (864)
. +|+||+++|++++....++
T Consensus 431 ~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 431 KSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SSEEEECCHHHHHHHHHHTGGG
T ss_pred CceEEEecHHHHHHHHhhhhHH
Confidence 3 6999999999999987665
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=7.8e-26 Score=246.29 Aligned_cols=307 Identities=17% Similarity=0.209 Sum_probs=201.5
Q ss_pred CCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCC-cccccCCCccEEEecCcccccc--ccccccCc
Q 002939 334 GWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLP-SSIRLLTDLRTLCLDGCKLEDI--RIIGELKE 410 (864)
Q Consensus 334 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~l--~~~~~l~~ 410 (864)
...+++++.|++.++. ...+|..+|..+++|++|++++|.+..++ ..|.++++|++|++++|.++.+ ..++++++
T Consensus 41 ~~~l~~l~~l~l~~~~--l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 41 DITLNNQKIVTFKNST--MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp SGGGCCCSEEEEESCE--ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccccCCceEEEecCCc--hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 3456777777777633 33577777777888888888888877664 4677888888888888877776 34777888
Q ss_pred ccEEeCCCCCCccCchh-hccccccceecccccccccccChhhhhcCcccceeeccccccccccccCCcchhhhcCCCCc
Q 002939 411 LEILSLQGCDIEHLPRE-IGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKWEISNCSLLEEIVGKEGGV 489 (864)
Q Consensus 411 L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~~~~~~~ 489 (864)
|++|++++|+++.+|.. +..+++|++|++++|. +..+++..+.++++|++|++++|.+..
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------ 179 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH------------------ 179 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB------------------
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc------------------
Confidence 88888888888877765 4778888888888875 667766667777888888777665431
Q ss_pred cCCCCccCcccceecccccccccccccccccccCCCcceEEEeeCCCcccccccccccccccccCcccccCCCccccccc
Q 002939 490 EADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFL 569 (864)
Q Consensus 490 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (864)
.+...+++|+.|++ +++. +..++
T Consensus 180 --~~~~~l~~L~~L~l--------------------------~~n~-l~~~~---------------------------- 202 (390)
T 3o6n_A 180 --VDLSLIPSLFHANV--------------------------SYNL-LSTLA---------------------------- 202 (390)
T ss_dssp --CCGGGCTTCSEEEC--------------------------CSSC-CSEEE----------------------------
T ss_pred --cccccccccceeec--------------------------cccc-ccccC----------------------------
Confidence 11122333444333 3321 11110
Q ss_pred hhhhcCCcceeecccccccccccccccCcccccCccEEEeecCCccccchhHHHHcccccEEEEEccccccccccccchh
Q 002939 570 VEKVLPNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSYKELFSNEGQVE 649 (864)
Q Consensus 570 ~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~ 649 (864)
..++|++|++++|. +.. +|...+++|+.|++++|.+...+ .+..+++|++|++++|.++ +..|
T Consensus 203 ---~~~~L~~L~l~~n~-l~~-----~~~~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~Ls~n~l~------~~~~ 265 (390)
T 3o6n_A 203 ---IPIAVEELDASHNS-INV-----VRGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELE------KIMY 265 (390)
T ss_dssp ---CCSSCSEEECCSSC-CCE-----EECCCCSSCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCC------EEES
T ss_pred ---CCCcceEEECCCCe-eee-----ccccccccccEEECCCCCCcccH--HHcCCCCccEEECCCCcCC------CcCh
Confidence 03567777777773 221 23333567888888888777653 3678888888888888874 3335
Q ss_pred hhcccccccceeecCCCcCccccccccccccccccccCccEEEeecccccccccCCccccCCccEEEEecCcCceeeech
Q 002939 650 KLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKNLLPSSASFRCLTKLSVWCCEQLINLVTS 729 (864)
Q Consensus 650 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 729 (864)
..+..+++|+.|++++ +.++.++ .....+++|++|++++| .++.+++....+++|++|++++| .++.++
T Consensus 266 ~~~~~l~~L~~L~L~~-n~l~~~~------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~-- 334 (390)
T 3o6n_A 266 HPFVKMQRLERLYISN-NRLVALN------LYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLK-- 334 (390)
T ss_dssp GGGTTCSSCCEEECCS-SCCCEEE------CSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCC--
T ss_pred hHccccccCCEEECCC-CcCcccC------cccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC-ccceeC--
Confidence 5677788888888888 4555541 11234677888888774 56666666667777777777764 455442
Q ss_pred hhhhhhccccEEEecCccc
Q 002939 730 SAAKNLVQLVTMKVDGCSK 748 (864)
Q Consensus 730 ~~~~~l~~L~~L~l~~c~~ 748 (864)
+..+++|++|++++++.
T Consensus 335 --~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 335 --LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp --CCTTCCCSEEECCSSCE
T ss_pred --chhhccCCEEEcCCCCc
Confidence 45566777777777653
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=3.3e-26 Score=252.52 Aligned_cols=140 Identities=18% Similarity=0.149 Sum_probs=92.6
Q ss_pred cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEecCccccccccccccCcccEEe
Q 002939 336 ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDIRIIGELKELEILS 415 (864)
Q Consensus 336 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l~~~~~l~~L~~L~ 415 (864)
.+++|+.|+++++... .+| .|..+++|++|++++|.++.+| ++.+++|++|++++|.++.++ ++++++|++|+
T Consensus 40 ~l~~L~~L~Ls~n~l~--~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~ 112 (457)
T 3bz5_A 40 QLATLTSLDCHNSSIT--DMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLN 112 (457)
T ss_dssp HHTTCCEEECCSSCCC--CCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEE
T ss_pred HcCCCCEEEccCCCcc--cCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEE
Confidence 5667777777765444 234 2567777777777777777765 677777777777777777764 77777777777
Q ss_pred CCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecccccccc--ccccCCcchhhhcCCCC
Q 002939 416 LQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW--EISNCSLLEEIVGKEGG 488 (864)
Q Consensus 416 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~L~~L~~~~~~ 488 (864)
+++|+++.+| ++.+++|++|++++|. ++.++ ++++++|++|++++|.... .+..+++|+.|+++.+.
T Consensus 113 L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 113 CDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSC
T ss_pred CCCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCc
Confidence 7777777765 6777777777777775 66652 5677777777777764221 23334444444444443
No 34
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=2.5e-26 Score=253.23 Aligned_cols=343 Identities=19% Similarity=0.149 Sum_probs=172.0
Q ss_pred hccceEEEeecCCccCCCCCC-cCCCceEEEecCCCCCCCCCCchhhcCCCC-------------ceEEEEeccccccCC
Q 002939 315 LKKCSTISLHGNNISEIPQGW-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPK-------------LKVLLFIRMRLLSLP 380 (864)
Q Consensus 315 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~-------------Lr~L~L~~~~i~~lp 380 (864)
.+.++.+.+++|.+..+|..+ .+++|++|+++++... ..+|..+ +.+++ +++|+++++.++.+|
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~-~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWE-RNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHH-HTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCccc-ccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 357788888888888888766 7788888888764322 2344433 44554 478888888887777
Q ss_pred cccccCCCccEEEecCccccccccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccc
Q 002939 381 SSIRLLTDLRTLCLDGCKLEDIRIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLE 460 (864)
Q Consensus 381 ~~~~~l~~L~~L~L~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 460 (864)
.. .++|++|++++|.++.++.. +.+|++|++++|+++.+|.. .++|++|++++|. ++.+|. ++++++|+
T Consensus 88 ~~---~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp~--~~~l~~L~ 156 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLPE--LQNSSFLK 156 (454)
T ss_dssp SC---CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCCC--CTTCTTCC
T ss_pred CC---cCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCcc--cCCCCCCC
Confidence 63 36788888888887776532 47788888888877766632 2678888888885 666662 77888888
Q ss_pred eeeccccccccccccCCcchhhhcCCCCccCCC-CccCcccceecccccccccccccccccccCCCcceEEEeeCCCccc
Q 002939 461 ELYMATCCIKWEISNCSLLEEIVGKEGGVEADP-SFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKC 539 (864)
Q Consensus 461 ~L~l~~~~~~~~~~~~~~L~~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 539 (864)
+|++++|.+...-....+|+.|+++.+.+...+ ...+++|+.|+++++. +..++. ..++|+.|++++|. +..
T Consensus 157 ~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~-l~~l~~-----~~~~L~~L~l~~n~-l~~ 229 (454)
T 1jl5_A 157 IIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS-LKKLPD-----LPLSLESIVAGNNI-LEE 229 (454)
T ss_dssp EEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC-CSSCCC-----CCTTCCEEECCSSC-CSS
T ss_pred EEECCCCcCcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCc-CCcCCC-----CcCcccEEECcCCc-CCc
Confidence 888887766531112235555555555544432 1234455555555432 222211 11345555555442 222
Q ss_pred ccccccccccccccCcccccCCCccccccchhhhcCCcceeecccccccccccccccCcccccCccEEEeecCCccccch
Q 002939 540 FSSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAP 619 (864)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~ 619 (864)
+|. + ..+++|++|++++|. +.. +|. .+++|++|++++|.+..+|.
T Consensus 230 lp~-~---------------------------~~l~~L~~L~l~~N~-l~~-----l~~-~~~~L~~L~l~~N~l~~l~~ 274 (454)
T 1jl5_A 230 LPE-L---------------------------QNLPFLTTIYADNNL-LKT-----LPD-LPPSLEALNVRDNYLTDLPE 274 (454)
T ss_dssp CCC-C---------------------------TTCTTCCEEECCSSC-CSS-----CCS-CCTTCCEEECCSSCCSCCCC
T ss_pred ccc-c---------------------------CCCCCCCEEECCCCc-CCc-----ccc-cccccCEEECCCCcccccCc
Confidence 221 0 014556666666553 111 221 13556666666665555443
Q ss_pred hHHHHcccccEEEEEccccccccccccchhhhcccccccceeecCCCcCccccccccccccccccccCccEEEeeccccc
Q 002939 620 DLLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNL 699 (864)
Q Consensus 620 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l 699 (864)
. +++|+.|++++|.++.++. ..++|+.|+++++ .++.+ ....++|++|++++ +.+
T Consensus 275 ~----~~~L~~L~ls~N~l~~l~~----------~~~~L~~L~l~~N-~l~~i---------~~~~~~L~~L~Ls~-N~l 329 (454)
T 1jl5_A 275 L----PQSLTFLDVSENIFSGLSE----------LPPNLYYLNASSN-EIRSL---------CDLPPSLEELNVSN-NKL 329 (454)
T ss_dssp C----CTTCCEEECCSSCCSEESC----------CCTTCCEEECCSS-CCSEE---------CCCCTTCCEEECCS-SCC
T ss_pred c----cCcCCEEECcCCccCcccC----------cCCcCCEEECcCC-cCCcc---------cCCcCcCCEEECCC-Ccc
Confidence 2 3556666666555543211 1145566666552 33332 01123566666665 344
Q ss_pred ccccCCccccCCccEEEEecCcCceeeechhhhhhhccccEEEecCc
Q 002939 700 KNLLPSSASFRCLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDGC 746 (864)
Q Consensus 700 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 746 (864)
++++.. +++|++|++++| .++.++. .+++|++|++++|
T Consensus 330 ~~lp~~---~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N 367 (454)
T 1jl5_A 330 IELPAL---PPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYN 367 (454)
T ss_dssp SCCCCC---CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS
T ss_pred cccccc---CCcCCEEECCCC-ccccccc-----hhhhccEEECCCC
Confidence 444322 455666666553 4444421 2455566666554
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=4.1e-26 Score=251.60 Aligned_cols=161 Identities=17% Similarity=0.127 Sum_probs=88.2
Q ss_pred CCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccc-cCCcccccCCCc-------------cEEEecCcc
Q 002939 333 QGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLL-SLPSSIRLLTDL-------------RTLCLDGCK 398 (864)
Q Consensus 333 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~~~~l~~L-------------~~L~L~~~~ 398 (864)
..+...+|+.|+++++.. ..+|..+ +++++|++|++++|.+. .+|..++++++| ++|++++|.
T Consensus 6 ~~~~~~~L~~L~l~~n~l--~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 6 RNVSNTFLQEPLRHSSNL--TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred cccccccchhhhcccCch--hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 334557888888887554 4677664 78888888888888877 678888887765 788888887
Q ss_pred ccccccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecccccccc--ccccC
Q 002939 399 LEDIRIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW--EISNC 476 (864)
Q Consensus 399 l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~ 476 (864)
+++++.+ .++|++|++++|.++.+|.. +++|++|++++|. +..++. + .++|++|++++|.+.. .++++
T Consensus 83 l~~lp~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~--~--~~~L~~L~L~~n~l~~lp~~~~l 152 (454)
T 1jl5_A 83 LSSLPEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSD--L--PPLLEYLGVSNNQLEKLPELQNS 152 (454)
T ss_dssp CSCCCSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCS--C--CTTCCEEECCSSCCSSCCCCTTC
T ss_pred cccCCCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccC--C--CCCCCEEECcCCCCCCCcccCCC
Confidence 7776553 36788888888887777743 3678888888875 665543 1 2578888887776542 34555
Q ss_pred CcchhhhcCCCCccCCCCccCcccceecccc
Q 002939 477 SLLEEIVGKEGGVEADPSFVFPRLTILQLCY 507 (864)
Q Consensus 477 ~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~ 507 (864)
++|+.|+++.+.+...+. .+++|+.|++++
T Consensus 153 ~~L~~L~l~~N~l~~lp~-~~~~L~~L~L~~ 182 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKKLPD-LPPSLEFIAAGN 182 (454)
T ss_dssp TTCCEEECCSSCCSCCCC-CCTTCCEEECCS
T ss_pred CCCCEEECCCCcCcccCC-CcccccEEECcC
Confidence 555555555555443221 223444444444
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=1.4e-25 Score=247.55 Aligned_cols=311 Identities=18% Similarity=0.153 Sum_probs=215.0
Q ss_pred hhhhccceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccE
Q 002939 312 KYLLKKCSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRT 391 (864)
Q Consensus 312 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~ 391 (864)
...++++++|++++|.++.+|....+++|++|+++++.... ++ +..+++|++|++++|.+..+| ++++++|++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~--~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT--LD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC--CC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe--Ec---cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 34578999999999999999865589999999999876554 44 688999999999999999886 899999999
Q ss_pred EEecCccccccccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecccccccc
Q 002939 392 LCLDGCKLEDIRIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW 471 (864)
Q Consensus 392 L~L~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 471 (864)
|++++|.++.++ ++.+++|++|++++|+++.++ ++.+++|++|++++|..+..++ +..+++|++|++++|.+..
T Consensus 111 L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 111 LNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp EECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC
T ss_pred EECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce
Confidence 999999999885 899999999999999999875 8899999999999997677662 7789999999999998654
Q ss_pred -ccccCCcchhhhcCCCCccCCCCccCcccceecccccccccccccccccccCCCcceEEEeeCCCcccccccccccccc
Q 002939 472 -EISNCSLLEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHEN 550 (864)
Q Consensus 472 -~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 550 (864)
.+..+++|+.|.++.+.+...+ ...+++|+.|++++|. +..+| +
T Consensus 185 l~l~~l~~L~~L~l~~N~l~~~~--------------------------l~~l~~L~~L~Ls~N~-l~~ip--~------ 229 (457)
T 3bz5_A 185 LDVSQNKLLNRLNCDTNNITKLD--------------------------LNQNIQLTFLDCSSNK-LTEID--V------ 229 (457)
T ss_dssp CCCTTCTTCCEEECCSSCCSCCC--------------------------CTTCTTCSEEECCSSC-CSCCC--C------
T ss_pred eccccCCCCCEEECcCCcCCeec--------------------------cccCCCCCEEECcCCc-ccccC--c------
Confidence 2445555555555554443332 2334566666666543 22221 0
Q ss_pred cccCcccccCCCccccccchhhhcCCcceeecccccccccccccccCcccccCccEEEeecCCccccchhHHHHcccccE
Q 002939 551 NEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVN 630 (864)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 630 (864)
..+++|+.|++++|. +. + .|...+++|+.|+++++ +|+.
T Consensus 230 ---------------------~~l~~L~~L~l~~N~-l~----~-~~~~~l~~L~~L~l~~n--------------~L~~ 268 (457)
T 3bz5_A 230 ---------------------TPLTQLTYFDCSVNP-LT----E-LDVSTLSKLTTLHCIQT--------------DLLE 268 (457)
T ss_dssp ---------------------TTCTTCSEEECCSSC-CS----C-CCCTTCTTCCEEECTTC--------------CCSC
T ss_pred ---------------------cccCCCCEEEeeCCc-CC----C-cCHHHCCCCCEEeccCC--------------CCCE
Confidence 125677777777773 22 2 23334667777776554 3455
Q ss_pred EEEEccccccccccccchhhhcccccccceeecCCCcCccccccccccccccccccCccEEEeecccccccccCCccccC
Q 002939 631 LELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKNLLPSSASFR 710 (864)
Q Consensus 631 L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 710 (864)
|++++|.+. +.+| ++.+++|+.|++++|..++.++. ..++|+.|++++| +
T Consensus 269 L~l~~n~~~------~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---------~~~~L~~L~l~~~-------------~ 318 (457)
T 3bz5_A 269 IDLTHNTQL------IYFQ--AEGCRKIKELDVTHNTQLYLLDC---------QAAGITELDLSQN-------------P 318 (457)
T ss_dssp CCCTTCTTC------CEEE--CTTCTTCCCCCCTTCTTCCEEEC---------TTCCCSCCCCTTC-------------T
T ss_pred EECCCCccC------Cccc--ccccccCCEEECCCCcccceecc---------CCCcceEechhhc-------------c
Confidence 566655542 3333 34677888888888776666521 2334444444432 4
Q ss_pred CccEEEEecCcCceeeechhhhhhhccccEEEecCc
Q 002939 711 CLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDGC 746 (864)
Q Consensus 711 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 746 (864)
+|++|+++++ +++.+ .+..+++|+.|+++++
T Consensus 319 ~L~~L~L~~N-~l~~l----~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 319 KLVYLYLNNT-ELTEL----DVSHNTKLKSLSCVNA 349 (457)
T ss_dssp TCCEEECTTC-CCSCC----CCTTCTTCSEEECCSS
T ss_pred cCCEEECCCC-ccccc----ccccCCcCcEEECCCC
Confidence 5555565542 44443 1455566666666653
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.6e-25 Score=255.64 Aligned_cols=309 Identities=17% Similarity=0.212 Sum_probs=210.7
Q ss_pred CCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCC-cccccCCCccEEEecCcccccc--ccccccCc
Q 002939 334 GWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLP-SSIRLLTDLRTLCLDGCKLEDI--RIIGELKE 410 (864)
Q Consensus 334 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~l--~~~~~l~~ 410 (864)
.+.+++++.+++.++. ...+|..+|..+++|++|+|++|.+..+| ..|+++++|++|+|++|.++.+ ..++++++
T Consensus 47 ~l~l~~l~~l~l~~~~--l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 47 DITLNNQKIVTFKNST--MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp SGGGCCCSEEEESSCE--ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cccCCCceEEEeeCCC--CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 3456778888887633 33577777888888888888888888764 4788888888888888888876 34688888
Q ss_pred ccEEeCCCCCCccCchh-hccccccceecccccccccccChhhhhcCcccceeeccccccccccccCCcchhhhcCCCCc
Q 002939 411 LEILSLQGCDIEHLPRE-IGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKWEISNCSLLEEIVGKEGGV 489 (864)
Q Consensus 411 L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~~~~~~~ 489 (864)
|++|++++|.++.+|.. ++.+++|++|++++|. +..+++..++++++|++|++++|.+..
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------ 185 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH------------------ 185 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSB------------------
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCC------------------
Confidence 88888888888877765 4788888888888886 777777667888888888887775432
Q ss_pred cCCCCccCcccceecccccccccccccccccccCCCcceEEEeeCCCcccccccccccccccccCcccccCCCccccccc
Q 002939 490 EADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFL 569 (864)
Q Consensus 490 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (864)
.+...+++|+.|++++ +. +..++
T Consensus 186 --~~~~~l~~L~~L~l~~--------------------------n~-l~~l~---------------------------- 208 (597)
T 3oja_B 186 --VDLSLIPSLFHANVSY--------------------------NL-LSTLA---------------------------- 208 (597)
T ss_dssp --CCGGGCTTCSEEECCS--------------------------SC-CSEEE----------------------------
T ss_pred --cChhhhhhhhhhhccc--------------------------Cc-ccccc----------------------------
Confidence 1122334444444433 21 11110
Q ss_pred hhhhcCCcceeecccccccccccccccCcccccCccEEEeecCCccccchhHHHHcccccEEEEEccccccccccccchh
Q 002939 570 VEKVLPNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSYKELFSNEGQVE 649 (864)
Q Consensus 570 ~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~ 649 (864)
..++|+.|++++|. +. .++....++|+.|++++|.+...+ .+..+++|+.|++++|.+. +..|
T Consensus 209 ---~~~~L~~L~ls~n~-l~-----~~~~~~~~~L~~L~L~~n~l~~~~--~l~~l~~L~~L~Ls~N~l~------~~~~ 271 (597)
T 3oja_B 209 ---IPIAVEELDASHNS-IN-----VVRGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELE------KIMY 271 (597)
T ss_dssp ---CCTTCSEEECCSSC-CC-----EEECSCCSCCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCC------EEES
T ss_pred ---CCchhheeeccCCc-cc-----ccccccCCCCCEEECCCCCCCCCh--hhccCCCCCEEECCCCccC------CCCH
Confidence 03456667776663 22 122223467778888777777642 3677888888888888874 3345
Q ss_pred hhcccccccceeecCCCcCccccccccccccccccccCccEEEeecccccccccCCccccCCccEEEEecCcCceeeech
Q 002939 650 KLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKNLLPSSASFRCLTKLSVWCCEQLINLVTS 729 (864)
Q Consensus 650 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 729 (864)
..+..+++|+.|++++ +.++.++ .....+++|+.|++++ +.+..++..+..+++|+.|++++| .+..++
T Consensus 272 ~~~~~l~~L~~L~Ls~-N~l~~l~------~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~-- 340 (597)
T 3oja_B 272 HPFVKMQRLERLYISN-NRLVALN------LYGQPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLDHN-SIVTLK-- 340 (597)
T ss_dssp GGGTTCSSCCEEECTT-SCCCEEE------CSSSCCTTCCEEECCS-SCCCCCGGGHHHHTTCSEEECCSS-CCCCCC--
T ss_pred HHhcCccCCCEEECCC-CCCCCCC------cccccCCCCcEEECCC-CCCCccCcccccCCCCCEEECCCC-CCCCcC--
Confidence 6677788888888888 4565542 1224477888888888 466677767777888888888875 455542
Q ss_pred hhhhhhccccEEEecCccchH
Q 002939 730 SAAKNLVQLVTMKVDGCSKIT 750 (864)
Q Consensus 730 ~~~~~l~~L~~L~l~~c~~l~ 750 (864)
+..+++|+.|++++|+.-.
T Consensus 341 --~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 341 --LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp --CCTTCCCSEEECCSSCEEH
T ss_pred --hhhcCCCCEEEeeCCCCCC
Confidence 4567788888888876443
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=6.4e-25 Score=235.24 Aligned_cols=150 Identities=20% Similarity=0.269 Sum_probs=104.2
Q ss_pred hhhhccceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccE
Q 002939 312 KYLLKKCSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRT 391 (864)
Q Consensus 312 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~ 391 (864)
...++++++|+++++.+..++....+++|++|++.++... .++. |..+++|++|++++|.+..+| .+.++++|++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~--~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT--DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC--CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred chhcccccEEEEeCCccccchhhhhcCCccEEEccCCccc--cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 3456788888888888777776557777777777765433 3333 567777777777777777765 4777777777
Q ss_pred EEecCccccccccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecccccc
Q 002939 392 LCLDGCKLEDIRIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCI 469 (864)
Q Consensus 392 L~L~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 469 (864)
|++++|.++.++.+..+++|++|++++|.....+..+..+++|++|++++|. +..+++ +..+++|++|++++|.+
T Consensus 115 L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 115 LYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCC
T ss_pred EECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCcc
Confidence 7777777777766777777777777777444333347777777777777775 555544 66777777777776654
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.9e-24 Score=231.49 Aligned_cols=308 Identities=19% Similarity=0.228 Sum_probs=229.3
Q ss_pred ccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEecCccccccccccc
Q 002939 328 ISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDIRIIGE 407 (864)
Q Consensus 328 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l~~~~~ 407 (864)
+..+.....+++|+.|++.++... .++. +..+++|++|++++|.+..+|. +.++++|++|++++|.++.++.+.+
T Consensus 34 ~~~~~~~~~l~~L~~L~l~~~~i~--~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~ 108 (347)
T 4fmz_A 34 VTDVVTQEELESITKLVVAGEKVA--SIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQN 108 (347)
T ss_dssp TTSEECHHHHTTCSEEECCSSCCC--CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTT
T ss_pred cCCcccchhcccccEEEEeCCccc--cchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcC
Confidence 333444446788888988875543 3443 5778899999999998888876 8888999999999998888888888
Q ss_pred cCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecccccccc--ccccCCcchhhhcC
Q 002939 408 LKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW--EISNCSLLEEIVGK 485 (864)
Q Consensus 408 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~L~~L~~~ 485 (864)
+++|++|++++|.+..+|. +..+++|++|++++|.....++. +..+++|++|++++|.+.. .+..+++|+.|+++
T Consensus 109 l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLN 185 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECT
T ss_pred CCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEcc
Confidence 9999999999998888876 88888999999998875665544 7888899999998887654 47788888888888
Q ss_pred CCCccCCC-CccCcccceecccccccccccccccccccCCCcceEEEeeCCCcccccccccccccccccCcccccCCCcc
Q 002939 486 EGGVEADP-SFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQ 564 (864)
Q Consensus 486 ~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (864)
.+.+...+ ...+++|+.|+++++. +..... ...+++|++|++++|..- ..+.
T Consensus 186 ~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~---~~~~~~L~~L~l~~n~l~-~~~~---------------------- 238 (347)
T 4fmz_A 186 YNQIEDISPLASLTSLHYFTAYVNQ-ITDITP---VANMTRLNSLKIGNNKIT-DLSP---------------------- 238 (347)
T ss_dssp TSCCCCCGGGGGCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECCSSCCC-CCGG----------------------
T ss_pred CCcccccccccCCCccceeecccCC-CCCCch---hhcCCcCCEEEccCCccC-CCcc----------------------
Confidence 88777654 3456788888887743 333322 456788999998887432 2211
Q ss_pred ccccchhhhcCCcceeecccccccccccccccCcccccCccEEEeecCCccccchhHHHHcccccEEEEEcccccccccc
Q 002939 565 QSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSYKELFSN 644 (864)
Q Consensus 565 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 644 (864)
...+++|++|++++|. +... -....+++|++|++++|.+...+. +..+++|+.|++++|.++
T Consensus 239 ------~~~l~~L~~L~l~~n~-l~~~----~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~----- 300 (347)
T 4fmz_A 239 ------LANLSQLTWLEIGTNQ-ISDI----NAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLG----- 300 (347)
T ss_dssp ------GTTCTTCCEEECCSSC-CCCC----GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCC-----
T ss_pred ------hhcCCCCCEEECCCCc-cCCC----hhHhcCCCcCEEEccCCccCCChh--hcCCCCCCEEECcCCcCC-----
Confidence 1137889999999884 3321 112237889999999998888743 678999999999998884
Q ss_pred ccchhhhcccccccceeecCCCcCccccccccccccccccccCccEEEeeccc
Q 002939 645 EGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCR 697 (864)
Q Consensus 645 ~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 697 (864)
+..+..+..+++|+.|++++|+ ++.+ .....+++|++|++++|+
T Consensus 301 -~~~~~~l~~l~~L~~L~L~~n~-l~~~-------~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 301 -NEDMEVIGGLTNLTTLFLSQNH-ITDI-------RPLASLSKMDSADFANQV 344 (347)
T ss_dssp -GGGHHHHHTCTTCSEEECCSSS-CCCC-------GGGGGCTTCSEESSSCC-
T ss_pred -CcChhHhhccccCCEEEccCCc-cccc-------cChhhhhccceeehhhhc
Confidence 4456677889999999999964 5554 125668999999999853
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=5.5e-25 Score=246.70 Aligned_cols=308 Identities=20% Similarity=0.200 Sum_probs=205.2
Q ss_pred eEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC-CcccccCCCccEEEecCc
Q 002939 319 STISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDGC 397 (864)
Q Consensus 319 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~ 397 (864)
+.++.+++.++.+|..+. ++++.|++.++... .++...|.++++|++|+|++|.+..+ |..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP-TETRLLDLGKNRIK--TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCCC-TTCSEEECCSSCCC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCCC-CCCcEEECCCCccc--eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 456777777888887663 57888888875443 45566678888888888888888866 777888888888888888
Q ss_pred cccccc--cccccCcccEEeCCCCCCccC-chhhccccccceecccccccccccChhhhhcCcccceeecccccccc---
Q 002939 398 KLEDIR--IIGELKELEILSLQGCDIEHL-PREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW--- 471 (864)
Q Consensus 398 ~l~~l~--~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~--- 471 (864)
.++.++ .+.++++|++|++++|++..+ |..+..+++|++|++++|. +..+++..+.++++|++|++++|.+..
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 888773 478888888888888888754 5677888888888888886 777777678888888888888776432
Q ss_pred -ccccCCcchhhhcCCCCccCCCCccCcccceecccccccccccccccccccCCCcceEEEeeCCCcccccccccccccc
Q 002939 472 -EISNCSLLEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHEN 550 (864)
Q Consensus 472 -~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 550 (864)
.+.. +++|+.|+++++..-...+..+
T Consensus 170 ~~l~~-----------------------------------------------l~~L~~L~l~~n~i~~~~~~~~------ 196 (477)
T 2id5_A 170 EALSH-----------------------------------------------LHGLIVLRLRHLNINAIRDYSF------ 196 (477)
T ss_dssp HHHTT-----------------------------------------------CTTCCEEEEESCCCCEECTTCS------
T ss_pred hHhcc-----------------------------------------------cCCCcEEeCCCCcCcEeChhhc------
Confidence 1122 2333333333322111100000
Q ss_pred cccCcccccCCCccccccchhhhcCCcceeecccccccccccccccCcccccCccEEEeecCCccccchhHHHHcccccE
Q 002939 551 NEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVN 630 (864)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 630 (864)
..+++|++|++++|..........+. ..+|++|++++|.+..++...+..+++|+.
T Consensus 197 ---------------------~~l~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 252 (477)
T 2id5_A 197 ---------------------KRLYRLKVLEISHWPYLDTMTPNCLY---GLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252 (477)
T ss_dssp ---------------------CSCTTCCEEEEECCTTCCEECTTTTT---TCCCSEEEEESSCCCSCCHHHHTTCTTCCE
T ss_pred ---------------------ccCcccceeeCCCCccccccCccccc---CccccEEECcCCcccccCHHHhcCccccCe
Confidence 01455566666555422211111111 236777777777777777777777888888
Q ss_pred EEEEccccccccccccchhhhcccccccceeecCCCcCccccccccccccccccccCccEEEeecccccccccCC-cccc
Q 002939 631 LELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKNLLPS-SASF 709 (864)
Q Consensus 631 L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~ 709 (864)
|++++|.++.++ +..+..+++|+.|++++ +.++.+ .......+++|++|++++ +.++.+++. +..+
T Consensus 253 L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~-n~l~~~-----~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l 319 (477)
T 2id5_A 253 LNLSYNPISTIE------GSMLHELLRLQEIQLVG-GQLAVV-----EPYAFRGLNYLRVLNVSG-NQLTTLEESVFHSV 319 (477)
T ss_dssp EECCSSCCCEEC------TTSCTTCTTCCEEECCS-SCCSEE-----CTTTBTTCTTCCEEECCS-SCCSCCCGGGBSCG
T ss_pred eECCCCcCCccC------hhhccccccCCEEECCC-CccceE-----CHHHhcCcccCCEEECCC-CcCceeCHhHcCCC
Confidence 888887775432 33466777888888887 345544 223345677888888888 466666554 3567
Q ss_pred CCccEEEEecC
Q 002939 710 RCLTKLSVWCC 720 (864)
Q Consensus 710 ~~L~~L~l~~c 720 (864)
++|++|+++++
T Consensus 320 ~~L~~L~l~~N 330 (477)
T 2id5_A 320 GNLETLILDSN 330 (477)
T ss_dssp GGCCEEECCSS
T ss_pred cccCEEEccCC
Confidence 78888888764
No 41
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.92 E-value=3.4e-24 Score=246.64 Aligned_cols=270 Identities=22% Similarity=0.341 Sum_probs=186.6
Q ss_pred chHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhhh-ccCC-CeEEEEEccCCCChHHHHHHH---HHHhCCc
Q 002939 2 STLKNVQNALLD--PDISIIGMYGMGGVGKTTLVKEVARRAKK-DMLF-DEVVFAEVSETPDIGKIQGEL---ADQLGMK 74 (864)
Q Consensus 2 ~~~~~i~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~~~~-~~~f-~~~~~v~~~~~~~~~~~~~~i---~~~l~~~ 74 (864)
.++++|.++|.. ++.++|+|+||||+||||||++++++... ..+| +.++|++++.. +...+...+ +..++..
T Consensus 131 ~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~ 209 (591)
T 1z6t_A 131 KLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQD 209 (591)
T ss_dssp HHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhccc
Confidence 357788888873 56789999999999999999999987654 5568 58999999876 333344443 3344321
Q ss_pred cccchhhhhccccccCCCChhhHHHHHHHHHhc-CCeEEEEEcCCCchhccccccCCCCCCCCCcEEEEEeCChHHHhhc
Q 002939 75 FSQGEIADQRGMKFSQESDVPGRARKLYARLQK-ENKILVILDNIWEDLDLEKVGVPSGNDWRGCKVLLTARDRHVLGSI 153 (864)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~~~~ 153 (864)
.. .......+.......+...+.. .+++||||||+|+..+++.+ ..|++||||||++.++..+
T Consensus 210 ~~---------~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 210 ES---------FSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp CC---------SCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTC
T ss_pred cc---------cccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhc
Confidence 10 0001123445566667777763 37899999999988776644 3478999999999887765
Q ss_pred CCceEEc---CCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHHHHHhccCCChhHHHHHHHHhcCCC
Q 002939 154 GSKTFQI---DVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTLAKALRNKSCVSAWKDALRQLKRPS 230 (864)
Q Consensus 154 ~~~~~~l---~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~~~~l~~~~~~~~w~~~l~~l~~~~ 230 (864)
....+++ ++|+.+|++++|...++.. .....+.+.+|+++|+|+|+|+..+|++++.. ...|+.+++.+....
T Consensus 274 ~~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~ 349 (591)
T 1z6t_A 274 MGPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQ 349 (591)
T ss_dssp CSCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCC
T ss_pred CCCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhH
Confidence 4344555 5899999999999988542 22334578899999999999999999999886 346888888776432
Q ss_pred CCC-----------c---------------hHHHH--Hhhhcc-c-hHHHH-------HHHHHhHHHHHHHhcccccccC
Q 002939 231 PGN-----------F---------------DGVLA--KTLEGI-D-TVEEA-------RDKVCTSVQELKDACLLLDGEN 273 (864)
Q Consensus 231 ~~~-----------~---------------~~~l~--~~~~~~-~-~~~~~-------~~~~~~~~~~L~~~~l~~~~~~ 273 (864)
... + ..+|. +.|++. . ..+.+ ...+..++++|++++|++....
T Consensus 350 ~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~ 429 (591)
T 1z6t_A 350 FKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRN 429 (591)
T ss_dssp CCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecC
Confidence 111 1 11222 333321 1 11111 1245678999999999974432
Q ss_pred --CceEEecHHHHHHHHHHhc
Q 002939 274 --SDWFSMHDVVRDVAISIAS 292 (864)
Q Consensus 274 --~~~~~mh~li~~~~~~~~~ 292 (864)
..+|+||++++++++....
T Consensus 430 ~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 430 GKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp TTEEEEECCHHHHHHHHHHTG
T ss_pred CCccEEEEcHHHHHHHHhhhh
Confidence 3489999999999988743
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=4.4e-24 Score=232.44 Aligned_cols=187 Identities=18% Similarity=0.189 Sum_probs=150.4
Q ss_pred hhccceEEEeecCCccCCCCCC--cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCC-cccccCCCcc
Q 002939 314 LLKKCSTISLHGNNISEIPQGW--ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLP-SSIRLLTDLR 390 (864)
Q Consensus 314 ~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~ 390 (864)
.+.++++++++++.+..+|... .+++|++|++.++... .++...|..+++|++|++++|.+..+| ..++++++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc--ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 4679999999999999999865 7899999999985543 567777899999999999999999884 5689999999
Q ss_pred EEEecCcccccccc--ccccCcccEEeCCCCCCccC-chhhccccccceecccccccccccChhhhhcCcccceeecccc
Q 002939 391 TLCLDGCKLEDIRI--IGELKELEILSLQGCDIEHL-PREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATC 467 (864)
Q Consensus 391 ~L~L~~~~l~~l~~--~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 467 (864)
+|++++|.++.++. ++++++|++|++++|.++.+ |..+..+++|++|++++|. ++.++ +..+++|++|++++|
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCSS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeecccc
Confidence 99999999998843 78999999999999999977 4568999999999999997 77764 567899999999998
Q ss_pred ccccccccCCcchhhhcCCCCccCCCCccCcccceecccc
Q 002939 468 CIKWEISNCSLLEEIVGKEGGVEADPSFVFPRLTILQLCY 507 (864)
Q Consensus 468 ~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~ 507 (864)
.+.. +....+|+.|+++.+.+...+...+++|+.|++++
T Consensus 197 ~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~ 235 (390)
T 3o6n_A 197 LLST-LAIPIAVEELDASHNSINVVRGPVNVELTILKLQH 235 (390)
T ss_dssp CCSE-EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCS
T ss_pred cccc-cCCCCcceEEECCCCeeeeccccccccccEEECCC
Confidence 7653 34445666666666655544444444555555544
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=1e-23 Score=236.38 Aligned_cols=155 Identities=23% Similarity=0.275 Sum_probs=135.5
Q ss_pred hhhccceEEEeecCCccCCCCC-C-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCc-ccccCCCc
Q 002939 313 YLLKKCSTISLHGNNISEIPQG-W-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPS-SIRLLTDL 389 (864)
Q Consensus 313 ~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L 389 (864)
..+.+++.|++++|.++.+++. + .+++|++|++.++... .+++..|.++++|++|+|++|.+..+|. .|.++++|
T Consensus 29 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS--AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC--EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence 4567899999999999988653 3 8999999999985443 4656678999999999999999999975 47999999
Q ss_pred cEEEecCcccccc--ccccccCcccEEeCCCCCCccC-chhhccccccceecccccccccccChhhhhcCcccceeeccc
Q 002939 390 RTLCLDGCKLEDI--RIIGELKELEILSLQGCDIEHL-PREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMAT 466 (864)
Q Consensus 390 ~~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 466 (864)
++|+|++|.++.+ ..+.++++|++|++++|.+..+ |..+..+++|++|++++|. +..+++..+.++++|+.|++++
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEES
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCC
Confidence 9999999999887 4689999999999999999865 5678999999999999996 8899888899999999999998
Q ss_pred cccc
Q 002939 467 CCIK 470 (864)
Q Consensus 467 ~~~~ 470 (864)
|.+.
T Consensus 186 n~i~ 189 (477)
T 2id5_A 186 LNIN 189 (477)
T ss_dssp CCCC
T ss_pred CcCc
Confidence 8654
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.3e-23 Score=239.43 Aligned_cols=210 Identities=19% Similarity=0.188 Sum_probs=162.1
Q ss_pred hhccceEEEeecCCccCCCCCC--cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCc-ccccCCCcc
Q 002939 314 LLKKCSTISLHGNNISEIPQGW--ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPS-SIRLLTDLR 390 (864)
Q Consensus 314 ~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~ 390 (864)
.+.+++.+++++|.+..+|..+ .+++|++|++.++... .++...|..+++|++|+|++|.+..+|. .|+++++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC--CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 3578999999999999999875 7899999999985543 5676678999999999999999998854 579999999
Q ss_pred EEEecCcccccccc--ccccCcccEEeCCCCCCccC-chhhccccccceecccccccccccChhhhhcCcccceeecccc
Q 002939 391 TLCLDGCKLEDIRI--IGELKELEILSLQGCDIEHL-PREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATC 467 (864)
Q Consensus 391 ~L~L~~~~l~~l~~--~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 467 (864)
+|+|++|.++.++. ++++++|++|++++|.++.+ |..++.+++|++|++++|. +..++ ++.+++|++|++++|
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccC
Confidence 99999999998843 79999999999999999966 4568999999999999996 77775 567899999999998
Q ss_pred ccccccccCCcchhhhcCCCCccCCCCccCcccceecccccccccccccccccccCCCcceEEEeeC
Q 002939 468 CIKWEISNCSLLEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCC 534 (864)
Q Consensus 468 ~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 534 (864)
.+.. +....+|+.|+++.+.+...+...+++|+.|+++++. +.+. .....+++|+.|++++|
T Consensus 203 ~l~~-l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~-l~~~---~~l~~l~~L~~L~Ls~N 264 (597)
T 3oja_B 203 LLST-LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTDT---AWLLNYPGLVEVDLSYN 264 (597)
T ss_dssp CCSE-EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSS
T ss_pred cccc-ccCCchhheeeccCCcccccccccCCCCCEEECCCCC-CCCC---hhhccCCCCCEEECCCC
Confidence 7753 4555667777777766655444444556666665532 2211 12333455555555544
No 45
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=3.5e-24 Score=247.60 Aligned_cols=417 Identities=17% Similarity=0.155 Sum_probs=229.1
Q ss_pred cCCCceEEEecCCCCCC--CCCC-----------chhhcCCCCceEEEEecccccc-CCccccc-C-CCccEEEecCcc-
Q 002939 336 ECPQLEFFYIFAPEDSP--LKIP-----------DNIFMGMPKLKVLLFIRMRLLS-LPSSIRL-L-TDLRTLCLDGCK- 398 (864)
Q Consensus 336 ~~~~L~~L~l~~~~~~~--~~~~-----------~~~~~~l~~Lr~L~L~~~~i~~-lp~~~~~-l-~~L~~L~L~~~~- 398 (864)
.+++|+.|++.++.... ..+| ..++..+++|++|+|+++.+.. .+..+.. + .+|++|+|++|.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 67789999997632210 0111 1223378899999999887663 2344444 3 349999999885
Q ss_pred ccc--c-ccccccCcccEEeCCCCCCcc-----CchhhccccccceecccccccccccC----hhhhhcCcccceeeccc
Q 002939 399 LED--I-RIIGELKELEILSLQGCDIEH-----LPREIGQLTQLKLLDLSYCFELKVIA----PNVLSNLSQLEELYMAT 466 (864)
Q Consensus 399 l~~--l-~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~l~~~~----~~~l~~l~~L~~L~l~~ 466 (864)
+.. + ....++++|++|+|++|.++. ++.....+++|++|++++|. +..+. +..+.++++|++|++++
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGD 229 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccC
Confidence 322 2 224578899999999987652 34455678889999998886 54221 23356788899999888
Q ss_pred ccccc---ccccCCcchhhhcCCCCccCCCCccCcccceecccccccccc-cccccccccCCCcceEEEeeCCCcccccc
Q 002939 467 CCIKW---EISNCSLLEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRA-FYPGIHTLECPMLTKLKVSCCDKLKCFSS 542 (864)
Q Consensus 467 ~~~~~---~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 542 (864)
|.+.. .+..+++|+.|.++ .+..... .........+++|+.+.+.++. ...++
T Consensus 230 ~~~~~l~~~~~~~~~L~~L~l~---------------------~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~- 286 (592)
T 3ogk_B 230 FEILELVGFFKAAANLEEFCGG---------------------SLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMP- 286 (592)
T ss_dssp CBGGGGHHHHHHCTTCCEEEEC---------------------BCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGG-
T ss_pred ccHHHHHHHHhhhhHHHhhccc---------------------ccccccchHHHHHHhhccccccccCccccc-hhHHH-
Confidence 76532 34444455544443 2111100 0001112334555555554321 11111
Q ss_pred cccccccccccCcccccCCCccccccchhhhcCCcceeecccccccccccccccC--cccccCccEEEeecCCccccchh
Q 002939 543 ELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFP--DHLLNKLKVLAIENDKSEVLAPD 620 (864)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p--~~~~~~L~~L~l~~~~~~~~~~~ 620 (864)
.....+++|++|++++|. +... .++ ...+++|++|+++++......+.
T Consensus 287 --------------------------~~~~~~~~L~~L~Ls~~~-l~~~---~~~~~~~~~~~L~~L~L~~~~~~~~l~~ 336 (592)
T 3ogk_B 287 --------------------------ILFPFAAQIRKLDLLYAL-LETE---DHCTLIQKCPNLEVLETRNVIGDRGLEV 336 (592)
T ss_dssp --------------------------GGGGGGGGCCEEEETTCC-CCHH---HHHHHHTTCTTCCEEEEEGGGHHHHHHH
T ss_pred --------------------------HHHhhcCCCcEEecCCCc-CCHH---HHHHHHHhCcCCCEEeccCccCHHHHHH
Confidence 111236677777777764 2210 011 12256777777774433334444
Q ss_pred HHHHcccccEEEEE-----------ccccccccccccchhhhcccccccceeecCCCcCccccccccccccc-cccccCc
Q 002939 621 LLERFHNLVNLELA-----------DGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKL-NMIFQNL 688 (864)
Q Consensus 621 ~~~~l~~L~~L~l~-----------~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~-~~~~~~L 688 (864)
.+..+++|++|+++ ++.++ ...++.....+++|+.|++ .|+.++.- .... ...+++|
T Consensus 337 ~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~-----~~~~~~l~~~~~~L~~L~l-~~~~l~~~-----~~~~l~~~~~~L 405 (592)
T 3ogk_B 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVS-----QRGLIALAQGCQELEYMAV-YVSDITNE-----SLESIGTYLKNL 405 (592)
T ss_dssp HHHHCTTCCEEEEECCCCSSTTSSTTCCCC-----HHHHHHHHHHCTTCSEEEE-EESCCCHH-----HHHHHHHHCCSC
T ss_pred HHHhCCCCCEEEeecCccccccccccCccC-----HHHHHHHHhhCccCeEEEe-ecCCccHH-----HHHHHHhhCCCC
Confidence 45667777777777 45553 1233344455777777777 33444432 1111 1236777
Q ss_pred cEEEeec---ccccccccC------CccccCCccEEEEecCcC-ceeeechhhhhhhccccEEEecCccchHHhhhcccc
Q 002939 689 ETLDISF---CRNLKNLLP------SSASFRCLTKLSVWCCEQ-LINLVTSSAAKNLVQLVTMKVDGCSKITELVVAIEA 758 (864)
Q Consensus 689 ~~L~l~~---c~~l~~~~~------~~~~~~~L~~L~l~~c~~-l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 758 (864)
++|++++ |+.+++.+. ....+++|++|+++.|.+ +.+.........+++|++|++++|..-.........
T Consensus 406 ~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 485 (592)
T 3ogk_B 406 CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSR 485 (592)
T ss_dssp CEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHT
T ss_pred cEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHh
Confidence 7777773 556665322 134577888888877664 333322222334677888888876532211112222
Q ss_pred ccCcceeeccccCeeecCccccccccccCCceeecCccceeecccCCCcccc-ccC-cccCCccceEeeC
Q 002939 759 DEANEEIFFPKLESLDLNRLQSLTTFCSANYTFKFPSLCYLSVSACPKMKIF-CRG-VLSAPRLEKVRLN 826 (864)
Q Consensus 759 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~l-p~~-~~~~~~L~~l~l~ 826 (864)
.+++|+.|+|++|+ +++-....+...+++|++|++++|+ ++.. ... ...+|.|....+.
T Consensus 486 -------~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 486 -------GCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp -------CCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEEC
T ss_pred -------cCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEec
Confidence 26788888888876 5543222334567888888888887 4322 111 1134555555444
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=1.2e-21 Score=207.85 Aligned_cols=103 Identities=21% Similarity=0.293 Sum_probs=69.3
Q ss_pred CCceEEEEeccccccCCc-ccccCCCccEEEecCcccccc--ccccccCcccEEeCCCCCCccCchhhccccccceeccc
Q 002939 364 PKLKVLLFIRMRLLSLPS-SIRLLTDLRTLCLDGCKLEDI--RIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLS 440 (864)
Q Consensus 364 ~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~ 440 (864)
+.|++|++++|.++.++. .|+++++|++|++++|.++.+ ..++++++|++|++++|.++.+|..+. ++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 566677777777666644 566777777777777776665 346677777777777777776665543 677777777
Q ss_pred ccccccccChhhhhcCcccceeecccccc
Q 002939 441 YCFELKVIAPNVLSNLSQLEELYMATCCI 469 (864)
Q Consensus 441 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 469 (864)
+|. +..+++..+.++++|++|++++|.+
T Consensus 130 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~l 157 (330)
T 1xku_A 130 ENE-ITKVRKSVFNGLNQMIVVELGTNPL 157 (330)
T ss_dssp SSC-CCBBCHHHHTTCTTCCEEECCSSCC
T ss_pred CCc-ccccCHhHhcCCccccEEECCCCcC
Confidence 775 6666666667777777777666543
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=7.1e-22 Score=209.69 Aligned_cols=289 Identities=16% Similarity=0.148 Sum_probs=172.8
Q ss_pred CceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC-CcccccCCCccEEEecCcccccc--ccccccCcccEEe
Q 002939 339 QLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDGCKLEDI--RIIGELKELEILS 415 (864)
Q Consensus 339 ~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~l--~~~~~l~~L~~L~ 415 (864)
+++.+++.++.. ..+|..+ .++|++|++++|.+..+ |..|.++++|++|++++|.++.+ ..++++++|++|+
T Consensus 34 ~l~~l~~~~~~l--~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGL--KAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCC--SSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCc--cccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 466666655332 2455443 35677777777777766 34677777777777777777765 4577777777777
Q ss_pred CCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecccccccc------ccccCCcchhhhcCCCCc
Q 002939 416 LQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW------EISNCSLLEEIVGKEGGV 489 (864)
Q Consensus 416 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~~~L~~L~~~~~~~ 489 (864)
+++|.++.+|..+. ++|++|++++|. +..+++..+.++++|++|++++|.+.. .+..+ +|+.|.++.+.+
T Consensus 109 L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 77777777766554 677777777775 666766667777777777777776531 12222 344444444433
Q ss_pred cCCCCccCcccceecccccccccccccccccccCCCcceEEEeeCCCcccccccccccccccccCcccccCCCccccccc
Q 002939 490 EADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFL 569 (864)
Q Consensus 490 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (864)
...+...+ ++|++|++++|..-...+..+
T Consensus 185 ~~l~~~~~--------------------------~~L~~L~l~~n~i~~~~~~~l------------------------- 213 (332)
T 2ft3_A 185 TGIPKDLP--------------------------ETLNELHLDHNKIQAIELEDL------------------------- 213 (332)
T ss_dssp SSCCSSSC--------------------------SSCSCCBCCSSCCCCCCTTSS-------------------------
T ss_pred CccCcccc--------------------------CCCCEEECCCCcCCccCHHHh-------------------------
Confidence 33222222 345555555432111111111
Q ss_pred hhhhcCCcceeecccccccccccccccCcccccCccEEEeecCCccccchhHHHHcccccEEEEEccccccccccccchh
Q 002939 570 VEKVLPNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSYKELFSNEGQVE 649 (864)
Q Consensus 570 ~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~ 649 (864)
..+++|+.|++++|. +.......+ ..+++|++|++++|.+..+|.. +..+++|+.|++++|.++.++...-.-.
T Consensus 214 --~~l~~L~~L~L~~N~-l~~~~~~~~--~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 214 --LRYSKLYRLGLGHNQ-IRMIENGSL--SFLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPV 287 (332)
T ss_dssp --TTCTTCSCCBCCSSC-CCCCCTTGG--GGCTTCCEEECCSSCCCBCCTT-GGGCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred --cCCCCCCEEECCCCc-CCcCChhHh--hCCCCCCEEECCCCcCeecChh-hhcCccCCEEECCCCCCCccChhHcccc
Confidence 126788888888884 322211111 2367899999999988887766 6889999999999999976643211000
Q ss_pred hhcccccccceeecCCCcCccccccccccccccccccCccEEEeeccc
Q 002939 650 KLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCR 697 (864)
Q Consensus 650 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 697 (864)
......++|+.|++++++ +... .........+++|+.+++++|.
T Consensus 288 ~~~~~~~~l~~L~l~~N~-~~~~---~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 288 GFGVKRAYYNGISLFNNP-VPYW---EVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCSSSCCBSEEECCSSS-SCGG---GSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccceEeecCc-cccc---ccCcccccccchhhhhhccccc
Confidence 011125778999999965 3321 1233445668899999998864
No 48
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=8.2e-23 Score=236.14 Aligned_cols=423 Identities=15% Similarity=0.111 Sum_probs=264.2
Q ss_pred hhccceEEEeecCCc----cCCCCCC-------------cCCCceEEEecCCCCCCCCCCchhhcC-CC-CceEEEEecc
Q 002939 314 LLKKCSTISLHGNNI----SEIPQGW-------------ECPQLEFFYIFAPEDSPLKIPDNIFMG-MP-KLKVLLFIRM 374 (864)
Q Consensus 314 ~~~~l~~L~l~~~~~----~~~~~~~-------------~~~~L~~L~l~~~~~~~~~~~~~~~~~-l~-~Lr~L~L~~~ 374 (864)
.++++++|+++++.. ..+|... .+++|+.|++.++.... ..+.. +.. ++ +|++|++++|
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~-~~~~~-l~~~~~~~L~~L~L~~~ 148 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSD-LDLDR-LAKARADDLETLKLDKC 148 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH-HHHHH-HHHHHGGGCCEEEEESC
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecH-HHHHH-HHHhccccCcEEECcCC
Confidence 356799999987532 1222211 57899999999753221 11122 222 34 4999999998
Q ss_pred c-cc--cCCcccccCCCccEEEecCcccccc------ccccccCcccEEeCCCCCCc-----cCchhhccccccceeccc
Q 002939 375 R-LL--SLPSSIRLLTDLRTLCLDGCKLEDI------RIIGELKELEILSLQGCDIE-----HLPREIGQLTQLKLLDLS 440 (864)
Q Consensus 375 ~-i~--~lp~~~~~l~~L~~L~L~~~~l~~l------~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~ 440 (864)
. +. .++....++++|++|+|++|.+++. .....+++|++|++++|.++ .++..+..+++|++|+++
T Consensus 149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~ 228 (592)
T 3ogk_B 149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228 (592)
T ss_dssp EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS
T ss_pred CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc
Confidence 6 22 3344456899999999999987653 23567899999999999886 456667789999999999
Q ss_pred ccccccccChhhhhcCcccceeeccccccccccccCCcchhhhcCCCCccCCCCccCcccceeccccccccccccccccc
Q 002939 441 YCFELKVIAPNVLSNLSQLEELYMATCCIKWEISNCSLLEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGIHT 520 (864)
Q Consensus 441 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 520 (864)
+|. +..++ ..+.++++|++|+++......... ........+++|+.|.+.++.. ..+ ....
T Consensus 229 ~~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~l~~~~~L~~L~l~~~~~-~~l--~~~~ 289 (592)
T 3ogk_B 229 DFE-ILELV-GFFKAAANLEEFCGGSLNEDIGMP--------------EKYMNLVFPRKLCRLGLSYMGP-NEM--PILF 289 (592)
T ss_dssp SCB-GGGGH-HHHHHCTTCCEEEECBCCCCTTCT--------------TSSSCCCCCTTCCEEEETTCCT-TTG--GGGG
T ss_pred Ccc-HHHHH-HHHhhhhHHHhhcccccccccchH--------------HHHHHhhccccccccCccccch-hHH--HHHH
Confidence 996 77775 458999999999987532110000 0001112335566665554311 111 1123
Q ss_pred ccCCCcceEEEeeCCCcccccccccccccccccCcccccCCCccccccchhhhcCCcceeecccccccccccccccCc--
Q 002939 521 LECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPD-- 598 (864)
Q Consensus 521 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~-- 598 (864)
..+++|++|++++|. +..... ......+++|++|+++++. ....++.
T Consensus 290 ~~~~~L~~L~Ls~~~-l~~~~~-------------------------~~~~~~~~~L~~L~L~~~~-----~~~~l~~~~ 338 (592)
T 3ogk_B 290 PFAAQIRKLDLLYAL-LETEDH-------------------------CTLIQKCPNLEVLETRNVI-----GDRGLEVLA 338 (592)
T ss_dssp GGGGGCCEEEETTCC-CCHHHH-------------------------HHHHTTCTTCCEEEEEGGG-----HHHHHHHHH
T ss_pred hhcCCCcEEecCCCc-CCHHHH-------------------------HHHHHhCcCCCEEeccCcc-----CHHHHHHHH
Confidence 456788888888876 322111 0111237888888888442 1111111
Q ss_pred ccccCccEEEeec-----------CCcccc-chhHHHHcccccEEEEEccccccccccccchhhhcc-cccccceeecCC
Q 002939 599 HLLNKLKVLAIEN-----------DKSEVL-APDLLERFHNLVNLELADGSYKELFSNEGQVEKLVG-KLARIKCLQLSG 665 (864)
Q Consensus 599 ~~~~~L~~L~l~~-----------~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~-~l~~L~~L~l~~ 665 (864)
..+++|++|++++ +.++.. .......+++|++|+++++.++ +..+..+. .+++|+.|++++
T Consensus 339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~------~~~~~~l~~~~~~L~~L~l~~ 412 (592)
T 3ogk_B 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT------NESLESIGTYLKNLCDFRLVL 412 (592)
T ss_dssp HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCC------HHHHHHHHHHCCSCCEEEEEE
T ss_pred HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCcc------HHHHHHHHhhCCCCcEEEEee
Confidence 1267899999983 444432 2333567899999999888884 33344444 488999999974
Q ss_pred ---CcCccccccccccccccccccCccEEEeecccc-cccc-cCC-ccccCCccEEEEecCcCceeeechhhhhhhcccc
Q 002939 666 ---LNDLKHLWLWEENSKLNMIFQNLETLDISFCRN-LKNL-LPS-SASFRCLTKLSVWCCEQLINLVTSSAAKNLVQLV 739 (864)
Q Consensus 666 ---~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~-l~~~-~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 739 (864)
|+.++..+...........+++|++|++++|.. +.+. +.. ...+++|+.|++++| ++++...+..+..+++|+
T Consensus 413 ~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~ 491 (592)
T 3ogk_B 413 LDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQ 491 (592)
T ss_dssp CSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCC
T ss_pred cCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccC
Confidence 455554211100111234588999999988764 3221 111 134788999999976 465543344567789999
Q ss_pred EEEecCccchHHhhh-ccccccCcceeeccccCeeecCccccccccccCCceeecCccceeecccC
Q 002939 740 TMKVDGCSKITELVV-AIEADEANEEIFFPKLESLDLNRLQSLTTFCSANYTFKFPSLCYLSVSAC 804 (864)
Q Consensus 740 ~L~l~~c~~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C 804 (864)
+|+|++|+ +++... .... .+++|+.|+|++|+ ++..........+|.|+...+...
T Consensus 492 ~L~l~~n~-l~~~~~~~~~~-------~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 492 KLEMRGCC-FSERAIAAAVT-------KLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EEEEESCC-CBHHHHHHHHH-------HCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred eeeccCCC-CcHHHHHHHHH-------hcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecCc
Confidence 99999998 433211 2222 37899999999976 776544445556787777666554
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=8.1e-22 Score=209.25 Aligned_cols=101 Identities=26% Similarity=0.321 Sum_probs=86.9
Q ss_pred CCceEEEEeccccccCCcccccCCCccEEEecCcccccc--ccccccCcccEEeCCCCCCccC-chhhccccccceeccc
Q 002939 364 PKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDI--RIIGELKELEILSLQGCDIEHL-PREIGQLTQLKLLDLS 440 (864)
Q Consensus 364 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~ 440 (864)
.++++++++++.+..+|..+. ++|++|++++|.++.+ ..+.++++|++|++++|+++.+ |..+..+++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 468999999999999998764 7999999999999887 4699999999999999999966 7789999999999999
Q ss_pred ccccccccChhhhhcCcccceeeccccccc
Q 002939 441 YCFELKVIAPNVLSNLSQLEELYMATCCIK 470 (864)
Q Consensus 441 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 470 (864)
+|. +..+|.... ++|++|++++|.+.
T Consensus 111 ~n~-l~~l~~~~~---~~L~~L~l~~n~i~ 136 (332)
T 2ft3_A 111 KNH-LVEIPPNLP---SSLVELRIHDNRIR 136 (332)
T ss_dssp SSC-CCSCCSSCC---TTCCEEECCSSCCC
T ss_pred CCc-CCccCcccc---ccCCEEECCCCccC
Confidence 996 888877532 78999998887653
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=9.5e-21 Score=200.91 Aligned_cols=148 Identities=18% Similarity=0.318 Sum_probs=124.8
Q ss_pred ccceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC-CcccccCCCccEEEe
Q 002939 316 KKCSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCL 394 (864)
Q Consensus 316 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L 394 (864)
.+++.++++++.++.+|..+. +.++.|++.++... .++...|.++++|++|++++|.+..+ |..|+++++|++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKIT--EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCC--CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccCccCC-CCCeEEECCCCcCC--EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 478899999999999987664 68999999986544 56776789999999999999999987 888999999999999
Q ss_pred cCcccccccc-ccccCcccEEeCCCCCCccCch-hhccccccceecccccccccc--cChhhhhcCcccceeecccccc
Q 002939 395 DGCKLEDIRI-IGELKELEILSLQGCDIEHLPR-EIGQLTQLKLLDLSYCFELKV--IAPNVLSNLSQLEELYMATCCI 469 (864)
Q Consensus 395 ~~~~l~~l~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~~ 469 (864)
++|.++.++. +. ++|++|++++|.++.++. .+..+++|++|++++|. +.. ..+..+.++++|++|++++|.+
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCcc
Confidence 9999998743 32 799999999999997754 58899999999999997 543 4555688899999999887754
No 51
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.86 E-value=1.8e-22 Score=233.54 Aligned_cols=417 Identities=16% Similarity=0.124 Sum_probs=220.4
Q ss_pred hccceEEEeecCCcc-CC---CCC------------C-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEecc-cc
Q 002939 315 LKKCSTISLHGNNIS-EI---PQG------------W-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRM-RL 376 (864)
Q Consensus 315 ~~~l~~L~l~~~~~~-~~---~~~------------~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~-~i 376 (864)
+++++.|.++++... ++ |.. . .+++|+.|++.++.... ..+..+...+++|++|++++| .+
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTD-DCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH-HHHHHHHHHCTTCCEEEEESCEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcH-HHHHHHHHhCCCCcEEeCCCcCCC
Confidence 467888888876421 11 111 1 56788888888743221 122233335788888888888 45
Q ss_pred cc--CCcccccCCCccEEEecCcccccc--cc----ccccCcccEEeCCCCC--Cc--cCchhhccccccceeccccccc
Q 002939 377 LS--LPSSIRLLTDLRTLCLDGCKLEDI--RI----IGELKELEILSLQGCD--IE--HLPREIGQLTQLKLLDLSYCFE 444 (864)
Q Consensus 377 ~~--lp~~~~~l~~L~~L~L~~~~l~~l--~~----~~~l~~L~~L~l~~~~--i~--~lp~~~~~l~~L~~L~l~~~~~ 444 (864)
.. ++..+.++++|++|++++|.+++. .. ...+++|++|++++|. +. .++..+..+++|++|++++|..
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 43 455556788888888888876653 22 2366788888888886 32 2333345678888888888865
Q ss_pred ccccChhhhhcCcccceeecccccc----------ccccccCCcchhhhcCCCCccCCCCccCcccceeccccccccccc
Q 002939 445 LKVIAPNVLSNLSQLEELYMATCCI----------KWEISNCSLLEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAF 514 (864)
Q Consensus 445 l~~~~~~~l~~l~~L~~L~l~~~~~----------~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 514 (864)
+..++ ..+.++++|++|+++.+.. ...+.+|++|+.+. .+.+.. ..
T Consensus 224 ~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls--------------------~~~~~~---~~ 279 (594)
T 2p1m_B 224 LEKLA-TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS--------------------GFWDAV---PA 279 (594)
T ss_dssp HHHHH-HHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEE--------------------CCBTCC---GG
T ss_pred HHHHH-HHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCccccc--------------------CCcccc---hh
Confidence 66653 4477888888888665531 11344555555441 111100 00
Q ss_pred ccccccccCCCcceEEEeeCCCcccccccccccccccccCcccccCCCccccccchhhhcCCcceeeccccccccccccc
Q 002939 515 YPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQG 594 (864)
Q Consensus 515 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 594 (864)
........+++|++|++++|. +..... ......+++|++|++++|. . ..
T Consensus 280 ~l~~~~~~~~~L~~L~L~~~~-l~~~~l-------------------------~~~~~~~~~L~~L~l~~~~--~---~~ 328 (594)
T 2p1m_B 280 YLPAVYSVCSRLTTLNLSYAT-VQSYDL-------------------------VKLLCQCPKLQRLWVLDYI--E---DA 328 (594)
T ss_dssp GGGGGHHHHTTCCEEECTTCC-CCHHHH-------------------------HHHHTTCTTCCEEEEEGGG--H---HH
T ss_pred hHHHHHHhhCCCCEEEccCCC-CCHHHH-------------------------HHHHhcCCCcCEEeCcCcc--C---HH
Confidence 000011234566666666655 321100 0011125667777776652 1 11
Q ss_pred ccCc--ccccCccEEEeec---------CCccccch-hHHHHcccccEEEEEccccccccccccchhhhcccccccceee
Q 002939 595 QFPD--HLLNKLKVLAIEN---------DKSEVLAP-DLLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQ 662 (864)
Q Consensus 595 ~~p~--~~~~~L~~L~l~~---------~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~ 662 (864)
.++. ..+++|++|++++ +.++.... .....+++|+.|.+.++.++. ..+......+++|+.|+
T Consensus 329 ~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~-----~~~~~l~~~~~~L~~L~ 403 (594)
T 2p1m_B 329 GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN-----AALITIARNRPNMTRFR 403 (594)
T ss_dssp HHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH-----HHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH-----HHHHHHHhhCCCcceeE
Confidence 1110 1156677777633 23332221 222357788888777777742 11222223577788887
Q ss_pred cC-----CCcCccccccccccccccccccCccEEEeecccccccc-cCCcc-ccCCccEEEEecCcCceeeechhhhhhh
Q 002939 663 LS-----GLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKNL-LPSSA-SFRCLTKLSVWCCEQLINLVTSSAAKNL 735 (864)
Q Consensus 663 l~-----~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l 735 (864)
++ +|+.++..+...........+++|++|++++ .+++. +.... .+++|+.|++++|. +++.........+
T Consensus 404 L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~ 480 (594)
T 2p1m_B 404 LCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGC 480 (594)
T ss_dssp EEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHC
T ss_pred eecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcC
Confidence 77 4555553211000011133466777777755 33221 11112 36777788877654 4433222233557
Q ss_pred ccccEEEecCccchHHhhhccccccCcceeeccccCeeecCccccccccccCCceeecCccceeeccc
Q 002939 736 VQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFCSANYTFKFPSLCYLSVSA 803 (864)
Q Consensus 736 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~ 803 (864)
++|++|++++|+.-......... .+++|+.|++++|+. +.-........+|.|+...+..
T Consensus 481 ~~L~~L~L~~n~~~~~~~~~~~~-------~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 481 DSLRKLEIRDCPFGDKALLANAS-------KLETMRSLWMSSCSV-SFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp TTCCEEEEESCSCCHHHHHHTGG-------GGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEEEEECS
T ss_pred CCcCEEECcCCCCcHHHHHHHHH-------hCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEEEEecC
Confidence 77778888777652222211222 367777777777754 3211111223456665544443
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=5.8e-23 Score=229.55 Aligned_cols=213 Identities=15% Similarity=0.063 Sum_probs=95.4
Q ss_pred CccEEEeecCCcccc----chhHHHHcccccEEEEEccccccccccccch-hhhcccccccceeecCCCcCccccccccc
Q 002939 603 KLKVLAIENDKSEVL----APDLLERFHNLVNLELADGSYKELFSNEGQV-EKLVGKLARIKCLQLSGLNDLKHLWLWEE 677 (864)
Q Consensus 603 ~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 677 (864)
+|++|++++|.+... .+..+..+++|++|++++|.+.+... ..+ +.....+++|+.|++++| .++..... .
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~--~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~-~ 275 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM--AELCPGLLHPSSRLRTLWIWEC-GITAKGCG-D 275 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH--HHHHHHHTSTTCCCCEEECTTS-CCCHHHHH-H
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH--HHHHHHHhcCCCCceEEECcCC-CCCHHHHH-H
Confidence 444555544444432 12334455555666555555532100 001 111223555666666554 33331000 0
Q ss_pred cccccccccCccEEEeecccccccccC-Cc-----cccCCccEEEEecCcCceeee---chhhhhhhccccEEEecCccc
Q 002939 678 NSKLNMIFQNLETLDISFCRNLKNLLP-SS-----ASFRCLTKLSVWCCEQLINLV---TSSAAKNLVQLVTMKVDGCSK 748 (864)
Q Consensus 678 ~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~-----~~~~~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~l~~c~~ 748 (864)
.......+++|++|++++| .+..... .+ ...++|++|++++|. +.... .+..+..+++|++|++++| .
T Consensus 276 l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~ 352 (461)
T 1z7x_W 276 LCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-R 352 (461)
T ss_dssp HHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-B
T ss_pred HHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-c
Confidence 0111223455666666653 3322111 00 112466777776653 33321 1234455677777777776 3
Q ss_pred hHHhhhccccccCcceeeccccCeeecCcccccc-----ccccCCceeecCccceeecccCCCccc----cccCcc-cCC
Q 002939 749 ITELVVAIEADEANEEIFFPKLESLDLNRLQSLT-----TFCSANYTFKFPSLCYLSVSACPKMKI----FCRGVL-SAP 818 (864)
Q Consensus 749 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~-----~l~~~~~~~~~~~L~~L~i~~C~~l~~----lp~~~~-~~~ 818 (864)
+++.....+..... ...++|+.|++++| .++ .++ ..+..+++|++|++++|+--.. +...+. ..+
T Consensus 353 i~~~~~~~l~~~l~--~~~~~L~~L~L~~n-~i~~~~~~~l~--~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~ 427 (461)
T 1z7x_W 353 LEDAGVRELCQGLG--QPGSVLRVLWLADC-DVSDSSCSSLA--ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 427 (461)
T ss_dssp CHHHHHHHHHHHHT--STTCCCCEEECTTS-CCCHHHHHHHH--HHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTC
T ss_pred cccccHHHHHHHHc--CCCCceEEEECCCC-CCChhhHHHHH--HHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCc
Confidence 44332221110000 01457888888874 555 333 2345677888888877753221 111111 134
Q ss_pred ccceEeeCC
Q 002939 819 RLEKVRLND 827 (864)
Q Consensus 819 ~L~~l~l~~ 827 (864)
+|+.|++.+
T Consensus 428 ~L~~L~~~~ 436 (461)
T 1z7x_W 428 LLEQLVLYD 436 (461)
T ss_dssp CCCEEECTT
T ss_pred chhheeecc
Confidence 577777663
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=5e-21 Score=200.66 Aligned_cols=245 Identities=17% Similarity=0.193 Sum_probs=138.0
Q ss_pred CceEEEecCCCCCCC-CCCchhhcCCCCceEEEEec-cccc-cCCcccccCCCccEEEecCccccc-c-ccccccCcccE
Q 002939 339 QLEFFYIFAPEDSPL-KIPDNIFMGMPKLKVLLFIR-MRLL-SLPSSIRLLTDLRTLCLDGCKLED-I-RIIGELKELEI 413 (864)
Q Consensus 339 ~L~~L~l~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~-~~i~-~lp~~~~~l~~L~~L~L~~~~l~~-l-~~~~~l~~L~~ 413 (864)
+++.|++.++..... .+|. .|.++++|++|++++ |.+. .+|..|+++++|++|++++|.++. + ..++++++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccCh-hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 455555554333210 2333 345667777777764 5555 556667777777777777776653 2 34666777777
Q ss_pred EeCCCCCCc-cCchhhccccccceeccccccccc-ccChhhhhcCc-ccceeeccccccccccccCCcchhhhcCCCCcc
Q 002939 414 LSLQGCDIE-HLPREIGQLTQLKLLDLSYCFELK-VIAPNVLSNLS-QLEELYMATCCIKWEISNCSLLEEIVGKEGGVE 490 (864)
Q Consensus 414 L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~-~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~L~~L~~~~~~~~ 490 (864)
|++++|.++ .+|..+..+++|++|++++|. +. .+|. .+.+++ +|++|++++|.+...+..
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~-~l~~l~~~L~~L~L~~N~l~~~~~~--------------- 192 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPD-SYGSFSKLFTSMTISRNRLTGKIPP--------------- 192 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCG-GGGCCCTTCCEEECCSSEEEEECCG---------------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCH-HHhhhhhcCcEEECcCCeeeccCCh---------------
Confidence 777777666 566666777777777777765 44 3333 366665 667777666654311000
Q ss_pred CCCCccCcccceecccccccccccccccccccCCCcceEEEeeCCCcccccccccccccccccCcccccCCCccccccch
Q 002939 491 ADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFLV 570 (864)
Q Consensus 491 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (864)
. ...+. |+.|++++|..-...+..+
T Consensus 193 -----~-----------------------~~~l~-L~~L~Ls~N~l~~~~~~~~-------------------------- 217 (313)
T 1ogq_A 193 -----T-----------------------FANLN-LAFVDLSRNMLEGDASVLF-------------------------- 217 (313)
T ss_dssp -----G-----------------------GGGCC-CSEEECCSSEEEECCGGGC--------------------------
T ss_pred -----H-----------------------HhCCc-ccEEECcCCcccCcCCHHH--------------------------
Confidence 0 00001 2333333221111111100
Q ss_pred hhhcCCcceeecccccccccccccccCc-ccccCccEEEeecCCccccchhHHHHcccccEEEEEccccccccccccchh
Q 002939 571 EKVLPNLEELRLSNKKDITKIWQGQFPD-HLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSYKELFSNEGQVE 649 (864)
Q Consensus 571 ~~~l~~L~~L~l~~~~~~~~~~~~~~p~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~ 649 (864)
..+++|+.|++++|. + .+..|. ..+++|++|++++|.+....+..+..+++|+.|++++|.++ +.+|
T Consensus 218 -~~l~~L~~L~L~~N~-l----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~------~~ip 285 (313)
T 1ogq_A 218 -GSDKNTQKIHLAKNS-L----AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC------GEIP 285 (313)
T ss_dssp -CTTSCCSEEECCSSE-E----CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE------EECC
T ss_pred -hcCCCCCEEECCCCc-e----eeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc------ccCC
Confidence 115667777777664 2 222221 12567888888887777555555778888888888888884 4445
Q ss_pred hhcccccccceeecCCCcCc
Q 002939 650 KLVGKLARIKCLQLSGLNDL 669 (864)
Q Consensus 650 ~~~~~l~~L~~L~l~~~~~l 669 (864)
.. ..+++|+.|++++++.+
T Consensus 286 ~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CS-TTGGGSCGGGTCSSSEE
T ss_pred CC-ccccccChHHhcCCCCc
Confidence 43 56778888888876544
No 54
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=1e-22 Score=235.53 Aligned_cols=424 Identities=16% Similarity=0.123 Sum_probs=235.1
Q ss_pred CCCchhhcCCCCceEEEEecccc-cc---CCcc------------cccCCCccEEEecCcccccc--cccc-ccCcccEE
Q 002939 354 KIPDNIFMGMPKLKVLLFIRMRL-LS---LPSS------------IRLLTDLRTLCLDGCKLEDI--RIIG-ELKELEIL 414 (864)
Q Consensus 354 ~~~~~~~~~l~~Lr~L~L~~~~i-~~---lp~~------------~~~l~~L~~L~L~~~~l~~l--~~~~-~l~~L~~L 414 (864)
..+..++..+++|++|+++++.. .. .|.. ...+++|++|+|++|.+++. ..+. .+++|++|
T Consensus 56 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L 135 (594)
T 2p1m_B 56 VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVL 135 (594)
T ss_dssp SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEE
T ss_pred cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEE
Confidence 34566778899999999999752 21 1221 34678999999999987764 4454 68999999
Q ss_pred eCCCC-CCcc--CchhhccccccceecccccccccccChhhh----hcCcccceeeccccc--ccc-----ccccCCcch
Q 002939 415 SLQGC-DIEH--LPREIGQLTQLKLLDLSYCFELKVIAPNVL----SNLSQLEELYMATCC--IKW-----EISNCSLLE 480 (864)
Q Consensus 415 ~l~~~-~i~~--lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l----~~l~~L~~L~l~~~~--~~~-----~~~~~~~L~ 480 (864)
++++| .+.. ++..+..+++|++|++++|. +.......+ ..+++|++|++++|. +.. .+..|
T Consensus 136 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~---- 210 (594)
T 2p1m_B 136 VLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC---- 210 (594)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHC----
T ss_pred eCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhC----
Confidence 99998 5653 56666689999999999986 554333223 356789999988775 211 11223
Q ss_pred hhhcCCCCccCCCCccCcccceecccccccccccccccccccCCCcceEEEeeCCC------cccccccccccccccccC
Q 002939 481 EIVGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDK------LKCFSSELYSLHENNEEG 554 (864)
Q Consensus 481 ~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~------l~~~~~~~~~~~~~~~~~ 554 (864)
++|+.|+++++..+..++. ....+++|++|.+..|.. +..++..+.....+..
T Consensus 211 -----------------~~L~~L~L~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~-- 269 (594)
T 2p1m_B 211 -----------------PNLKSLKLNRAVPLEKLAT--LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRC-- 269 (594)
T ss_dssp -----------------TTCCEEECCTTSCHHHHHH--HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCE--
T ss_pred -----------------CCCcEEecCCCCcHHHHHH--HHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCccc--
Confidence 4555555555433333211 123355566665544321 0000000000000000
Q ss_pred cccccCCCccccccchhhhcCCcceeecccccccccccccccCcccccCccEEEeecCCccccchhHHHHcccccEEEEE
Q 002939 555 QLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELA 634 (864)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 634 (864)
+.................+++|++|++++|. +.......+ ...+++|++|++++|............+++|++|++.
T Consensus 270 -Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~-~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 270 -LSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKL-LCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp -EECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHH-HTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred -ccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHH-HhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEe
Confidence 0000000001112222347888888888885 321100000 0126788888888773222333334568888888884
Q ss_pred ---------ccccccccccccchhhhcccccccceeecCCCcCccccccccccccccccccCccEEEee-----cccccc
Q 002939 635 ---------DGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDIS-----FCRNLK 700 (864)
Q Consensus 635 ---------~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~-----~c~~l~ 700 (864)
++.++ +..+......+++|+.|.+. |+.++.. ........+++|+.|+++ +|+.++
T Consensus 347 ~~~~~g~~~~~~l~-----~~~l~~l~~~~~~L~~L~~~-~~~l~~~----~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 347 PSEPFVMEPNVALT-----EQGLVSVSMGCPKLESVLYF-CRQMTNA----ALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp CSCTTCSSCSSCCC-----HHHHHHHHHHCTTCCEEEEE-ESCCCHH----HHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred cCcccccccCCCCC-----HHHHHHHHHhchhHHHHHHh-cCCcCHH----HHHHHHhhCCCcceeEeecccCCCccccc
Confidence 33442 12223333457888888553 3555432 011112247888888888 567776
Q ss_pred cccC------CccccCCccEEEEecCcCceeeechhhhhhhccccEEEecCccchHHhhhccccccCcceeeccccCeee
Q 002939 701 NLLP------SSASFRCLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLD 774 (864)
Q Consensus 701 ~~~~------~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 774 (864)
..+. ....+++|++|++++ ++++.........+++|++|++++|..-......... .+++|+.|+
T Consensus 417 ~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~-------~~~~L~~L~ 487 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS-------GCDSLRKLE 487 (594)
T ss_dssp CCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHH-------HCTTCCEEE
T ss_pred CCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHh-------cCCCcCEEE
Confidence 4322 135678888888864 5554432222334778888888887632222211112 278888888
Q ss_pred cCccccccccccCCceeecCccceeecccCCCccccccCc-ccCCccceEeeC
Q 002939 775 LNRLQSLTTFCSANYTFKFPSLCYLSVSACPKMKIFCRGV-LSAPRLEKVRLN 826 (864)
Q Consensus 775 l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~lp~~~-~~~~~L~~l~l~ 826 (864)
|++|+. +..........+++|++|++++|+........+ ..+|.|+...+.
T Consensus 488 L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 488 IRDCPF-GDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVID 539 (594)
T ss_dssp EESCSC-CHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEEC
T ss_pred CcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEec
Confidence 888764 543332344567888888888887622222222 235666554444
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1.8e-20 Score=197.66 Aligned_cols=89 Identities=24% Similarity=0.381 Sum_probs=70.8
Q ss_pred CCCCceEEEEeccccccCCcccccCCCccEEEecCcccccc-ccccccCcccEEeCCCCCCccCchhhccccccceeccc
Q 002939 362 GMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDI-RIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLS 440 (864)
Q Consensus 362 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~ 440 (864)
..+++++|+|+++.+..+|..+.++++|++|+|++|.++.+ ..++++++|++|++++|.++.+|..++.+++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 45788999999999999998888888999999888888766 44778888888888888877778778788888888887
Q ss_pred ccccccccCh
Q 002939 441 YCFELKVIAP 450 (864)
Q Consensus 441 ~~~~l~~~~~ 450 (864)
+|.....+|.
T Consensus 159 ~n~~~~~~p~ 168 (328)
T 4fcg_A 159 ACPELTELPE 168 (328)
T ss_dssp EETTCCCCCS
T ss_pred CCCCccccCh
Confidence 7764554443
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=1e-19 Score=206.29 Aligned_cols=171 Identities=19% Similarity=0.149 Sum_probs=131.3
Q ss_pred ccceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEec
Q 002939 316 KKCSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLD 395 (864)
Q Consensus 316 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~ 395 (864)
..++.|++++|.++.+|..+. ++|+.|++.+|... .+|. .+++|++|+|++|.++.+|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~--~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT--SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS--CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC--CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 468899999999999998776 89999999986554 4665 57899999999999999987 68999999999
Q ss_pred CccccccccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecccccccccccc
Q 002939 396 GCKLEDIRIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKWEISN 475 (864)
Q Consensus 396 ~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 475 (864)
+|.++.++. .+++|++|++++|+++.+|.. +++|++|++++|. ++.+|. .+.+|+.|++++|.+...-..
T Consensus 110 ~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~~l~~~ 179 (622)
T 3g06_A 110 SNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLTSLPML 179 (622)
T ss_dssp SCCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSCCCCC
T ss_pred CCcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCCCCccc
Confidence 999998866 778999999999999999864 4899999999996 777764 357889999988876542234
Q ss_pred CCcchhhhcCCCCccCCCCccCcccceecccc
Q 002939 476 CSLLEEIVGKEGGVEADPSFVFPRLTILQLCY 507 (864)
Q Consensus 476 ~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~ 507 (864)
+++|+.|+++.|.+...+. .+++|+.|++++
T Consensus 180 ~~~L~~L~Ls~N~l~~l~~-~~~~L~~L~L~~ 210 (622)
T 3g06_A 180 PSGLQELSVSDNQLASLPT-LPSELYKLWAYN 210 (622)
T ss_dssp CTTCCEEECCSSCCSCCCC-CCTTCCEEECCS
T ss_pred CCCCcEEECCCCCCCCCCC-ccchhhEEECcC
Confidence 4555555555555444322 234444444444
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=8.9e-22 Score=219.89 Aligned_cols=391 Identities=19% Similarity=0.129 Sum_probs=217.0
Q ss_pred CCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccc-----cCCcccccCCCccEEEecCcccccc--cc-ccccC
Q 002939 338 PQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLL-----SLPSSIRLLTDLRTLCLDGCKLEDI--RI-IGELK 409 (864)
Q Consensus 338 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~l~~l--~~-~~~l~ 409 (864)
++|+.|+++++..... ....+|..+++|++|++++|.+. .++..+..+++|++|++++|.+.+. .. ...+.
T Consensus 3 ~~l~~L~Ls~~~l~~~-~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDA-RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHH-HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCch-hHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 3456666655332211 11233455666666666666655 3345555566666666666655442 12 12233
Q ss_pred ----cccEEeCCCCCCc-----cCchhhccccccceecccccccccccChhhhh-----cCcccceeecccccccccccc
Q 002939 410 ----ELEILSLQGCDIE-----HLPREIGQLTQLKLLDLSYCFELKVIAPNVLS-----NLSQLEELYMATCCIKWEISN 475 (864)
Q Consensus 410 ----~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~ 475 (864)
+|++|++++|+++ .+|..+..+++|++|++++|. +.......+. ..++|++|++++|.+...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~--- 157 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA--- 157 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG---
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHH---
Confidence 4666666666555 235555566666666666654 3322111111 123455555544432210
Q ss_pred CCcchhhhcCCCCccCCCCccCcccceecccccccccccccccccccCCCcceEEEeeCCCcccccc-cccccccccccC
Q 002939 476 CSLLEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSS-ELYSLHENNEEG 554 (864)
Q Consensus 476 ~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~~~ 554 (864)
....+ ......+++|++|++++|. +..... .+..
T Consensus 158 ----------------------------------~~~~l--~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~-------- 192 (461)
T 1z7x_W 158 ----------------------------------SCEPL--ASVLRAKPDFKELTVSNND-INEAGVRVLCQ-------- 192 (461)
T ss_dssp ----------------------------------GHHHH--HHHHHHCTTCCEEECCSSB-CHHHHHHHHHH--------
T ss_pred ----------------------------------HHHHH--HHHHhhCCCCCEEECcCCC-cchHHHHHHHH--------
Confidence 00000 0113346899999999876 322111 0000
Q ss_pred cccccCCCccccccchhhhcCCcceeecccccccccccccccCcc--cccCccEEEeecCCccccchh-----HHHHccc
Q 002939 555 QLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDH--LLNKLKVLAIENDKSEVLAPD-----LLERFHN 627 (864)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~--~~~~L~~L~l~~~~~~~~~~~-----~~~~l~~ 627 (864)
......++|++|++++|. +.......++.. .+++|++|++++|.+...... .+..+++
T Consensus 193 --------------~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~ 257 (461)
T 1z7x_W 193 --------------GLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257 (461)
T ss_dssp --------------HHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred --------------HHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCC
Confidence 001125699999999994 332111112222 268999999999987764322 2235899
Q ss_pred ccEEEEEccccccccccccchhhhcccccccceeecCCCcCccccccccccccccccccCccEEEeeccccccc-----c
Q 002939 628 LVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKN-----L 702 (864)
Q Consensus 628 L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----~ 702 (864)
|++|++++|.++... ...++..+..+++|+.|+++++ .++......-........++|++|++++|. ++. +
T Consensus 258 L~~L~L~~n~l~~~~--~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l 333 (461)
T 1z7x_W 258 LRTLWIWECGITAKG--CGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHF 333 (461)
T ss_dssp CCEEECTTSCCCHHH--HHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHH
T ss_pred ceEEECcCCCCCHHH--HHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHH
Confidence 999999999885321 1226777888999999999995 444320000000111223699999999975 443 2
Q ss_pred cCCccccCCccEEEEecCcCceeeechhhhhh----hccccEEEecCccchH----HhhhccccccCcceeeccccCeee
Q 002939 703 LPSSASFRCLTKLSVWCCEQLINLVTSSAAKN----LVQLVTMKVDGCSKIT----ELVVAIEADEANEEIFFPKLESLD 774 (864)
Q Consensus 703 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~----l~~L~~L~l~~c~~l~----~~~~~~~~~~~~~~~~~~~L~~L~ 774 (864)
+..+..+++|++|++++| .+.+......... .++|++|++++|..-. .++ ..+. .+++|+.|+
T Consensus 334 ~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~-~~l~-------~~~~L~~L~ 404 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA-ATLL-------ANHSLRELD 404 (461)
T ss_dssp HHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH-HHHH-------HCCCCCEEE
T ss_pred HHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH-HHHH-------hCCCccEEE
Confidence 333456799999999986 5655432222121 5699999999985432 344 2222 378999999
Q ss_pred cCccccccccccCCce----eecCccceeecccCCCc
Q 002939 775 LNRLQSLTTFCSANYT----FKFPSLCYLSVSACPKM 807 (864)
Q Consensus 775 l~~c~~L~~l~~~~~~----~~~~~L~~L~i~~C~~l 807 (864)
+++| .++......+. ...+.|+.|.+.++..-
T Consensus 405 l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 405 LSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp CCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CCCC-CCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 9994 66654321111 12346888887776543
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=1.2e-20 Score=197.91 Aligned_cols=106 Identities=25% Similarity=0.333 Sum_probs=90.8
Q ss_pred CCceEEEEeccccc---cCCcccccCCCccEEEecC-cccccc--ccccccCcccEEeCCCCCCc-cCchhhccccccce
Q 002939 364 PKLKVLLFIRMRLL---SLPSSIRLLTDLRTLCLDG-CKLEDI--RIIGELKELEILSLQGCDIE-HLPREIGQLTQLKL 436 (864)
Q Consensus 364 ~~Lr~L~L~~~~i~---~lp~~~~~l~~L~~L~L~~-~~l~~l--~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~ 436 (864)
.+++.|+++++.+. .+|..+.++++|++|++++ |.+... ..++++++|++|++++|+++ .+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 68999999999998 5899999999999999995 777753 56999999999999999998 78989999999999
Q ss_pred ecccccccccccChhhhhcCcccceeeccccccc
Q 002939 437 LDLSYCFELKVIAPNVLSNLSQLEELYMATCCIK 470 (864)
Q Consensus 437 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 470 (864)
|++++|. +....+..+.++++|++|++++|.+.
T Consensus 130 L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~ 162 (313)
T 1ogq_A 130 LDFSYNA-LSGTLPPSISSLPNLVGITFDGNRIS 162 (313)
T ss_dssp EECCSSE-EESCCCGGGGGCTTCCEEECCSSCCE
T ss_pred EeCCCCc-cCCcCChHHhcCCCCCeEECcCCccc
Confidence 9999997 66444455888999999998877653
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=8.4e-20 Score=192.47 Aligned_cols=220 Identities=24% Similarity=0.279 Sum_probs=179.7
Q ss_pred hccceEEEeecCCccCCCCCC-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEE
Q 002939 315 LKKCSTISLHGNNISEIPQGW-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLC 393 (864)
Q Consensus 315 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~ 393 (864)
...++.|++++|.+..+|..+ .+++|++|++.++... .+|..+ .++++|++|++++|.+..+|..++++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 357999999999999999877 8999999999986655 677554 889999999999999999999999999999999
Q ss_pred ecCccccc-c-ccc---------cccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCccccee
Q 002939 394 LDGCKLED-I-RII---------GELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEEL 462 (864)
Q Consensus 394 L~~~~l~~-l-~~~---------~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L 462 (864)
+++|.+.. + ..+ .++++|++|++++|+++.+|..++.+++|++|++++|. +..+|+. +.++++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEE
Confidence 99986443 4 233 45999999999999999999999999999999999997 8888775 8999999999
Q ss_pred eccccccccccccCCcchhhhcCCCCccCCCCccCcccceecccccccccccccccccccCCCcceEEEeeCCCcccccc
Q 002939 463 YMATCCIKWEISNCSLLEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSS 542 (864)
Q Consensus 463 ~l~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 542 (864)
++++|.+...+. .....+++|+.|+++++.....++.. ...+++|+.|++++|+..+.+|.
T Consensus 235 ~Ls~n~~~~~~p-----------------~~~~~l~~L~~L~L~~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 235 DLRGCTALRNYP-----------------PIFGGRAPLKRLILKDCSNLLTLPLD--IHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp ECTTCTTCCBCC-----------------CCTTCCCCCCEEECTTCTTCCBCCTT--GGGCTTCCEEECTTCTTCCCCCG
T ss_pred ECcCCcchhhhH-----------------HHhcCCCCCCEEECCCCCchhhcchh--hhcCCCCCEEeCCCCCchhhccH
Confidence 999887543211 11234577888888887666555543 45688999999999998888877
Q ss_pred cccccccccccCcccccCCCccccccchhhhcCCcceeecccc
Q 002939 543 ELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNK 585 (864)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 585 (864)
.+.. +++|+.+.+..+
T Consensus 296 ~l~~---------------------------L~~L~~l~l~~~ 311 (328)
T 4fcg_A 296 LIAQ---------------------------LPANCIILVPPH 311 (328)
T ss_dssp GGGG---------------------------SCTTCEEECCGG
T ss_pred HHhh---------------------------ccCceEEeCCHH
Confidence 5554 678888888766
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=200.79 Aligned_cols=150 Identities=19% Similarity=0.223 Sum_probs=126.6
Q ss_pred ceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC-CcccccCCCccEEEecC
Q 002939 318 CSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDG 396 (864)
Q Consensus 318 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~ 396 (864)
....+.+++.++.+|..+. ++|+.|+++++... .++...|.++++|++|++++|.+..+ |..|.++++|++|++++
T Consensus 33 ~~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSGLT-EAVKSLDLSNNRIT--YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp TSEEECCSTTCSSCCTTCC-TTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEeeCCCCCccccccccc-ccCcEEECCCCcCc--ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 3457888899999998664 58999999885544 56776788999999999999999877 56799999999999999
Q ss_pred ccccccc--cccccCcccEEeCCCCCCccCch--hhccccccceecccccccccccChhhhhcCcccceeeccccccc
Q 002939 397 CKLEDIR--IIGELKELEILSLQGCDIEHLPR--EIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIK 470 (864)
Q Consensus 397 ~~l~~l~--~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 470 (864)
|.++.++ .++++++|++|++++|.++.+|. .+..+++|++|++++|..+..+++..+.++++|++|++++|.+.
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 9998873 38899999999999999998886 68889999999999986688887777889999999999888754
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=1.5e-19 Score=204.95 Aligned_cols=112 Identities=23% Similarity=0.218 Sum_probs=67.3
Q ss_pred CceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEecCccccccccccccCcccEEeCCC
Q 002939 339 QLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDIRIIGELKELEILSLQG 418 (864)
Q Consensus 339 ~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l~~~~~l~~L~~L~l~~ 418 (864)
+++.|++.++... .+|..++ ++|++|++++|.++.+|. .+++|++|+|++|.++.++. .+++|++|++++
T Consensus 41 ~l~~L~ls~n~L~--~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLT--TLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCS--CCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECS
T ss_pred CCcEEEecCCCcC--ccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcC
Confidence 4566666654333 4555442 566666776666666665 45666666666666666544 566666666666
Q ss_pred CCCccCchhhccccccceecccccccccccChhhhhcCcccceeeccccc
Q 002939 419 CDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCC 468 (864)
Q Consensus 419 ~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 468 (864)
|+++.+|. .+++|++|++++|. ++.+|.. +++|++|++++|.
T Consensus 111 N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 111 NPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQ 152 (622)
T ss_dssp CCCCCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSC
T ss_pred CcCCCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCc
Confidence 66666664 45666666666664 5555442 3556666655554
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=7.1e-20 Score=202.33 Aligned_cols=150 Identities=25% Similarity=0.348 Sum_probs=124.3
Q ss_pred ceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCC-cccccCCCccEEEecC
Q 002939 318 CSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLP-SSIRLLTDLRTLCLDG 396 (864)
Q Consensus 318 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~ 396 (864)
.+.++..++.++.+|..+. ++++.|++.++... .++...|.++++|++|+|++|.+..++ ..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQ--IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCC--EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCC--eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 4567888888888888765 68899999875544 466667889999999999999988774 6788999999999999
Q ss_pred ccccccc--cccccCcccEEeCCCCCCccCch-hhccccccceecccccccccccChhhhhcCcccceeeccccccc
Q 002939 397 CKLEDIR--IIGELKELEILSLQGCDIEHLPR-EIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIK 470 (864)
Q Consensus 397 ~~l~~l~--~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 470 (864)
|.++.++ .+..+++|++|++++|.++.+|. .+..+++|++|++++|..+..+++..+.++++|++|++++|.+.
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 9988873 58899999999999999887754 67889999999999977788888877888999999998877643
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=7.8e-20 Score=202.74 Aligned_cols=150 Identities=25% Similarity=0.318 Sum_probs=124.9
Q ss_pred ceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC-CcccccCCCccEEEecC
Q 002939 318 CSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDG 396 (864)
Q Consensus 318 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~ 396 (864)
.+.++.++..++.+|..+. ++++.|+++++... .++...|.++++|++|+|++|.+..+ |..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQ--MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCCC-CCccEEECcCCcCc--eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 4567888888888887664 68899999875544 46666788999999999999999877 46789999999999999
Q ss_pred cccccc--ccccccCcccEEeCCCCCCccCch-hhccccccceecccccccccccChhhhhcCcccceeeccccccc
Q 002939 397 CKLEDI--RIIGELKELEILSLQGCDIEHLPR-EIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIK 470 (864)
Q Consensus 397 ~~l~~l--~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 470 (864)
|.++.+ ..+..+++|++|++++|.++.+|. .+..+++|++|++++|..+..+++..+.++++|++|++++|.+.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 999887 348889999999999999987764 67889999999999977788888888889999999998887643
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=2e-19 Score=192.58 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=42.8
Q ss_pred cCCcceeecccccccccccccccCcccccCccEEEeecCCccccchhHHHHcccccEEEEEccccccc
Q 002939 574 LPNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSYKEL 641 (864)
Q Consensus 574 l~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 641 (864)
+++|++|++++|. +.......+. .+++|++|++++|.+...+...+..+++|+.|++++|.++..
T Consensus 173 l~~L~~L~l~~n~-l~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 173 LTFLEELEIDASD-LQSYEPKSLK--SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp CCEEEEEEEEETT-CCEECTTTTT--TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTC
T ss_pred CCCCCEEECCCCC-cCccCHHHHh--ccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccc
Confidence 4566666666663 2211111111 256788888888888777777777788899999988888643
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=8.6e-20 Score=191.34 Aligned_cols=145 Identities=21% Similarity=0.219 Sum_probs=90.1
Q ss_pred EEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC---CcccccCCCccEEEecC
Q 002939 320 TISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL---PSSIRLLTDLRTLCLDG 396 (864)
Q Consensus 320 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l---p~~~~~l~~L~~L~L~~ 396 (864)
.++.+++.++.+|..+. ++++.|++.++... .++..+|.++++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~--~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP-SSATRLELESNKLQ--SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSSCCSCCC-TTCCEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcccCCCCCC-CCCCEEECCCCccC--ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 56667777777776543 46667776664433 45666666677777777777666543 44555666677777766
Q ss_pred cccccc-ccccccCcccEEeCCCCCCccCch--hhccccccceecccccccccccChhhhhcCcccceeeccccc
Q 002939 397 CKLEDI-RIIGELKELEILSLQGCDIEHLPR--EIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCC 468 (864)
Q Consensus 397 ~~l~~l-~~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 468 (864)
|.++.+ ..+..+++|++|++++|+++.++. .+..+++|++|++++|. +...++..+..+++|++|++++|.
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCE
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCc
Confidence 666655 346666666666666666665543 55666666666666664 555555555666666666665554
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=6.7e-21 Score=200.37 Aligned_cols=275 Identities=17% Similarity=0.162 Sum_probs=158.6
Q ss_pred CchhhcCCCCceEEEEeccccccCC-cccccCCCccEEEecCccccccccccccCcccEEeCCCCCCccCchhhcccccc
Q 002939 356 PDNIFMGMPKLKVLLFIRMRLLSLP-SSIRLLTDLRTLCLDGCKLEDIRIIGELKELEILSLQGCDIEHLPREIGQLTQL 434 (864)
Q Consensus 356 ~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L 434 (864)
+..++..+++|++|++++|.+..++ ..|.++++|++|++++|.++.+..+..+++|++|++++|+++.+| ..++|
T Consensus 26 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~L 101 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VGPSI 101 (317)
T ss_dssp HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE----ECTTC
T ss_pred HHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc----CCCCc
Confidence 3445566667777777777777664 457777777777777777766655777777777777777766555 33677
Q ss_pred ceecccccccccccChhhhhcCcccceeeccccccccccccCCcchhhhcCCCCccCCCCccCcccceeccccccccccc
Q 002939 435 KLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKWEISNCSLLEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAF 514 (864)
Q Consensus 435 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 514 (864)
++|++++|. +..+++. .+++|++|++++|.+.... ......+++|+.|++
T Consensus 102 ~~L~l~~n~-l~~~~~~---~~~~L~~L~l~~N~l~~~~-----------------~~~~~~l~~L~~L~L--------- 151 (317)
T 3o53_A 102 ETLHAANNN-ISRVSCS---RGQGKKNIYLANNKITMLR-----------------DLDEGCRSRVQYLDL--------- 151 (317)
T ss_dssp CEEECCSSC-CSEEEEC---CCSSCEEEECCSSCCCSGG-----------------GBCTGGGSSEEEEEC---------
T ss_pred CEEECCCCc-cCCcCcc---ccCCCCEEECCCCCCCCcc-----------------chhhhccCCCCEEEC---------
Confidence 777777775 6655443 3566777777666543100 000011222333333
Q ss_pred ccccccccCCCcceEEEeeCCCcccccccccccccccccCcccccCCCccccccchhhhcCCcceeeccccccccccccc
Q 002939 515 YPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQG 594 (864)
Q Consensus 515 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 594 (864)
++|..-...+..+ ...+++|++|++++|. +...
T Consensus 152 -----------------s~N~l~~~~~~~~--------------------------~~~l~~L~~L~L~~N~-l~~~--- 184 (317)
T 3o53_A 152 -----------------KLNEIDTVNFAEL--------------------------AASSDTLEHLNLQYNF-IYDV--- 184 (317)
T ss_dssp -----------------TTSCCCEEEGGGG--------------------------GGGTTTCCEEECTTSC-CCEE---
T ss_pred -----------------CCCCCCcccHHHH--------------------------hhccCcCCEEECCCCc-Cccc---
Confidence 3221111000000 0114666777777663 2221
Q ss_pred ccCcccccCccEEEeecCCccccchhHHHHcccccEEEEEccccccccccccchhhhcccccccceeecCCCcCcccccc
Q 002939 595 QFPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWL 674 (864)
Q Consensus 595 ~~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~ 674 (864)
.+...+++|++|++++|.+..+++. +..+++|+.|++++|.++. +|..+..+++|+.|++++++ +..-
T Consensus 185 -~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~-------l~~~~~~l~~L~~L~l~~N~-~~~~-- 252 (317)
T 3o53_A 185 -KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-------IEKALRFSQNLEHFDLRGNG-FHCG-- 252 (317)
T ss_dssp -ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-------ECTTCCCCTTCCEEECTTCC-CBHH--
T ss_pred -ccccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccc-------hhhHhhcCCCCCEEEccCCC-ccCc--
Confidence 1111267788888888888777766 6778888888888888853 34556677888888888843 3310
Q ss_pred ccccccccccccCccEEEeecccccccccCCccccCCccEEEEecCcCcee
Q 002939 675 WEENSKLNMIFQNLETLDISFCRNLKNLLPSSASFRCLTKLSVWCCEQLIN 725 (864)
Q Consensus 675 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ 725 (864)
........++.|+.|++.+|+.+++..+.....+.+....-.+|..+..
T Consensus 253 --~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~~ 301 (317)
T 3o53_A 253 --TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301 (317)
T ss_dssp --HHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCTT
T ss_pred --CHHHHHhccccceEEECCCchhccCCchhccCCCceecccceeeccCCh
Confidence 1122234567788888887777776655433334344333344555543
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=5.6e-19 Score=195.88 Aligned_cols=102 Identities=19% Similarity=0.241 Sum_probs=64.5
Q ss_pred CCceEEEEeccccccC-CcccccCCCccEEEecCcccccc--ccccccCcccEEeCCCCCCccCchh-hccccccceecc
Q 002939 364 PKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDGCKLEDI--RIIGELKELEILSLQGCDIEHLPRE-IGQLTQLKLLDL 439 (864)
Q Consensus 364 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l 439 (864)
+++++|+|++|.+..+ |..|.++++|++|+|++|.++.+ ..+.++++|++|+|++|+++.+|.. +..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 5666666666666655 45566666666666666666665 3466666666666666666655443 556666666666
Q ss_pred cccccccccChhhhhcCcccceeeccc
Q 002939 440 SYCFELKVIAPNVLSNLSQLEELYMAT 466 (864)
Q Consensus 440 ~~~~~l~~~~~~~l~~l~~L~~L~l~~ 466 (864)
++|. +..+++..+.++++|++|++++
T Consensus 155 ~~N~-l~~~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 155 RNNP-IESIPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp CSCC-CCEECTTTTTTCTTCCEEECCC
T ss_pred CCCC-cceeCHhHHhcCCcccEEeCCC
Confidence 6664 5666655566666666666544
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=7.2e-19 Score=194.25 Aligned_cols=110 Identities=21% Similarity=0.294 Sum_probs=74.3
Q ss_pred CCCchhhcCCCCceEEEEeccccccC-CcccccCCCccEEEecCcccccc--ccccccCcccEEeCCCCCCccCch-hhc
Q 002939 354 KIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDGCKLEDI--RIIGELKELEILSLQGCDIEHLPR-EIG 429 (864)
Q Consensus 354 ~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~i~~lp~-~~~ 429 (864)
.+|..+ .+++++|+|++|.+..+ +..|.++++|++|+|++|.++.+ ..+.++++|++|+|++|+++.+|. .+.
T Consensus 57 ~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 133 (440)
T 3zyj_A 57 EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133 (440)
T ss_dssp SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSC
T ss_pred cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhh
Confidence 456544 35677777777777765 35677777777777777777665 356777777777777777776654 466
Q ss_pred cccccceecccccccccccChhhhhcCcccceeecccc
Q 002939 430 QLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATC 467 (864)
Q Consensus 430 ~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 467 (864)
.+++|++|++++|. +..+++..+.++++|++|++++|
T Consensus 134 ~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~ 170 (440)
T 3zyj_A 134 YLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGEL 170 (440)
T ss_dssp SCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCC
T ss_pred ccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCC
Confidence 77777777777775 66666666666777777766543
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=1.4e-19 Score=190.36 Aligned_cols=159 Identities=16% Similarity=0.083 Sum_probs=93.8
Q ss_pred cCccEEEeecCCccccchhHHHHcccccEEEEEccccccccccccchhhhc-ccccccceeecCCCcCcccccccccccc
Q 002939 602 NKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSYKELFSNEGQVEKLV-GKLARIKCLQLSGLNDLKHLWLWEENSK 680 (864)
Q Consensus 602 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~-~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 680 (864)
++|++|++++|.+...++..+..+++|++|++++|.++.++ +..+ ..+++|+.|++++| .++.++
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------~~~~~~~l~~L~~L~L~~N-~l~~~~------- 185 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN------FAELAASSDTLEHLNLQYN-FIYDVK------- 185 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE------GGGGGGGTTTCCEEECTTS-CCCEEE-------
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc------HHHHhhccCcCCEEECCCC-cCcccc-------
Confidence 44555555555555555444556666666666666664321 2222 34566777777663 344431
Q ss_pred ccccccCccEEEeecccccccccCCccccCCccEEEEecCcCceeeechhhhhhhccccEEEecCccchHHhhhcccccc
Q 002939 681 LNMIFQNLETLDISFCRNLKNLLPSSASFRCLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDGCSKITELVVAIEADE 760 (864)
Q Consensus 681 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 760 (864)
....+++|++|++++ +.++.+++.+..+++|+.|++++| .++.++ ..+..+++|+.|++++|+......+.....
T Consensus 186 ~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~--~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~- 260 (317)
T 3o53_A 186 GQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIE--KALRFSQNLEHFDLRGNGFHCGTLRDFFSK- 260 (317)
T ss_dssp CCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEEC--TTCCCCTTCCEEECTTCCCBHHHHHHHHHT-
T ss_pred cccccccCCEEECCC-CcCCcchhhhcccCcccEEECcCC-cccchh--hHhhcCCCCCEEEccCCCccCcCHHHHHhc-
Confidence 112366777777777 466666666667777777777764 566553 345667777778877766552322233333
Q ss_pred CcceeeccccCeeecCccccccccc
Q 002939 761 ANEEIFFPKLESLDLNRLQSLTTFC 785 (864)
Q Consensus 761 ~~~~~~~~~L~~L~l~~c~~L~~l~ 785 (864)
+++|+.|++.+++.++...
T Consensus 261 ------~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 261 ------NQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp ------CHHHHHHHHHHHHHHHSSS
T ss_pred ------cccceEEECCCchhccCCc
Confidence 6777777777777766654
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=1.9e-18 Score=180.99 Aligned_cols=103 Identities=24% Similarity=0.195 Sum_probs=60.7
Q ss_pred CCceEEEEeccccccCCcc-cccCCCccEEEecCcccccc----ccccccCcccEEeCCCCCCccCchhhccccccceec
Q 002939 364 PKLKVLLFIRMRLLSLPSS-IRLLTDLRTLCLDGCKLEDI----RIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLD 438 (864)
Q Consensus 364 ~~Lr~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~l~~l----~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~ 438 (864)
++|++|++++|.+..+|.. |.++++|++|++++|.++.+ ..+..+++|++|++++|.+..+|..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 4666666666666666543 46666666666666665543 234456666666666666666665566666666666
Q ss_pred ccccccccccCh-hhhhcCcccceeecccc
Q 002939 439 LSYCFELKVIAP-NVLSNLSQLEELYMATC 467 (864)
Q Consensus 439 l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~ 467 (864)
+++|. +..+++ ..+.++++|++|++++|
T Consensus 108 l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n 136 (306)
T 2z66_A 108 FQHSN-LKQMSEFSVFLSLRNLIYLDISHT 136 (306)
T ss_dssp CTTSE-EESSTTTTTTTTCTTCCEEECTTS
T ss_pred CCCCc-ccccccchhhhhccCCCEEECCCC
Confidence 66664 444443 33555555555555444
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=3.7e-18 Score=176.71 Aligned_cols=147 Identities=21% Similarity=0.310 Sum_probs=106.2
Q ss_pred eEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC-CcccccCCCccEEEecCc
Q 002939 319 STISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDGC 397 (864)
Q Consensus 319 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~ 397 (864)
+.++.+++.++.+|..+ .++++.|++.++... .++...|..+++|++|++++|.+..+ |..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRIS--HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCC--ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56777777777777654 357788888764443 45666667788888888888877766 667778888888888888
Q ss_pred c-cccc--ccccccCcccEEeCCCCCCccC-chhhccccccceecccccccccccChhhhhcCcccceeecccccc
Q 002939 398 K-LEDI--RIIGELKELEILSLQGCDIEHL-PREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCI 469 (864)
Q Consensus 398 ~-l~~l--~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 469 (864)
. ++.+ ..+..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+++..++++++|++|++++|.+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcc
Confidence 5 6665 4577778888888888877755 5556777788888888775 6677666677777777777766643
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=1.7e-18 Score=192.80 Aligned_cols=61 Identities=25% Similarity=0.222 Sum_probs=31.6
Q ss_pred ccCccEEEeecccccccccCCccccCCccEEEEecCcCceeeechhhhhhhccccEEEecCccch
Q 002939 685 FQNLETLDISFCRNLKNLLPSSASFRCLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDGCSKI 749 (864)
Q Consensus 685 ~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 749 (864)
+++|++|++++ +.++++++.+..+++|+.|++++| .+..++ ..+..+++|+.|++++|+..
T Consensus 190 l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp--~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 190 FAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIE--KALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEEC--TTCCCCTTCCEEECTTCCBC
T ss_pred CCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCC-cCcccc--hhhccCCCCCEEEcCCCCCc
Confidence 45555555555 345555555555555555555553 444432 23445555666666655444
No 73
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=7.2e-18 Score=174.56 Aligned_cols=193 Identities=24% Similarity=0.342 Sum_probs=157.3
Q ss_pred hhhhccceEEEeecCCccCCCCC-C-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccc-cccC-CcccccCC
Q 002939 312 KYLLKKCSTISLHGNNISEIPQG-W-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMR-LLSL-PSSIRLLT 387 (864)
Q Consensus 312 ~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~l-p~~~~~l~ 387 (864)
...++++++|++++|.++.++.. + .+++|+.|++.++... .++...|..+++|++|++++|. +..+ |..+..++
T Consensus 28 ~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~ 105 (285)
T 1ozn_A 28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA--RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105 (285)
T ss_dssp TTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT
T ss_pred cCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc--eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc
Confidence 34567999999999999988864 3 8899999999985443 4655667999999999999997 8887 77899999
Q ss_pred CccEEEecCcccccc--ccccccCcccEEeCCCCCCccCch-hhccccccceecccccccccccChhhhhcCcccceeec
Q 002939 388 DLRTLCLDGCKLEDI--RIIGELKELEILSLQGCDIEHLPR-EIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYM 464 (864)
Q Consensus 388 ~L~~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 464 (864)
+|++|++++|.++.+ ..+.++++|++|++++|.++.+|. .+..+++|++|++++|. ++.+++..+..+++|++|++
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEEC
Confidence 999999999999987 458999999999999999998865 48899999999999996 88998877999999999999
Q ss_pred ccccccc----ccccCCcchhhhcCCCCccCCCC---ccCcccceecccc
Q 002939 465 ATCCIKW----EISNCSLLEEIVGKEGGVEADPS---FVFPRLTILQLCY 507 (864)
Q Consensus 465 ~~~~~~~----~~~~~~~L~~L~~~~~~~~~~~~---~~~~~L~~L~l~~ 507 (864)
++|.+.. .+..+++|+.|+++.+.+...+. ..+++|+.|++++
T Consensus 185 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred CCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccC
Confidence 9998653 46666777777777666655442 2344555555544
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=1.2e-18 Score=193.98 Aligned_cols=214 Identities=17% Similarity=0.132 Sum_probs=119.4
Q ss_pred CCceEEEEeccccccCC-cccccCCCccEEEecCccccccccccccCcccEEeCCCCCCccCchhhccccccceeccccc
Q 002939 364 PKLKVLLFIRMRLLSLP-SSIRLLTDLRTLCLDGCKLEDIRIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYC 442 (864)
Q Consensus 364 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~ 442 (864)
++|++|+|++|.+..++ ..|+++++|++|+|++|.++++..++.+++|++|++++|.++.+|. .++|++|++++|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~N 109 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANN 109 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSS
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCCcCEEECcCC
Confidence 36777777777766553 4566777777777777766665446667777777777776665552 366777777776
Q ss_pred ccccccChhhhhcCcccceeeccccccccccccCCcchhhhcCCCCccCCCCccCcccceeccccccccccccccccccc
Q 002939 443 FELKVIAPNVLSNLSQLEELYMATCCIKWEISNCSLLEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGIHTLE 522 (864)
Q Consensus 443 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 522 (864)
. +..+++. .+++|+.|++++|.+..... .. ...
T Consensus 110 ~-l~~~~~~---~l~~L~~L~L~~N~l~~~~~-----------------~~--------------------------~~~ 142 (487)
T 3oja_A 110 N-ISRVSCS---RGQGKKNIYLANNKITMLRD-----------------LD--------------------------EGC 142 (487)
T ss_dssp C-CCCEEEC---CCSSCEEEECCSSCCCSGGG-----------------BC--------------------------GGG
T ss_pred c-CCCCCcc---ccCCCCEEECCCCCCCCCCc-----------------hh--------------------------hcC
Confidence 5 5555442 34566666666655431000 00 011
Q ss_pred CCCcceEEEeeCCCcccccccccccccccccCcccccCCCccccccchhhhcCCcceeecccccccccccccccCccccc
Q 002939 523 CPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHLLN 602 (864)
Q Consensus 523 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~~~ 602 (864)
+++|+.|++++|..-...+..+. ..+++|+.|++++|. +.. ..+...++
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~l~--------------------------~~l~~L~~L~Ls~N~-l~~----~~~~~~l~ 191 (487)
T 3oja_A 143 RSRVQYLDLKLNEIDTVNFAELA--------------------------ASSDTLEHLNLQYNF-IYD----VKGQVVFA 191 (487)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGG--------------------------GGTTTCCEEECTTSC-CCE----EECCCCCT
T ss_pred CCCCCEEECCCCCCCCcChHHHh--------------------------hhCCcccEEecCCCc-ccc----ccccccCC
Confidence 22223333322211111111000 014566666666663 221 11122256
Q ss_pred CccEEEeecCCccccchhHHHHcccccEEEEEccccccccccccchhhhcccccccceeecCCCc
Q 002939 603 KLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLN 667 (864)
Q Consensus 603 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 667 (864)
+|+.|++++|.++.+|+. +..+++|+.|++++|.++. +|..+..+++|+.|++++++
T Consensus 192 ~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-------lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 192 KLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-------IEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp TCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-------ECTTCCCCTTCCEEECTTCC
T ss_pred CCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-------cchhhccCCCCCEEEcCCCC
Confidence 777777777777776665 5677777777777777743 34456667777777777743
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=2.3e-17 Score=165.69 Aligned_cols=192 Identities=15% Similarity=0.157 Sum_probs=146.9
Q ss_pred hhccceEEEeecCCccCCCCCC--cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEec-cccccCC-cccccCCCc
Q 002939 314 LLKKCSTISLHGNNISEIPQGW--ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIR-MRLLSLP-SSIRLLTDL 389 (864)
Q Consensus 314 ~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~i~~lp-~~~~~l~~L 389 (864)
.+.+++.|++++|.++.++... .+++|+.|++.++.. ...++...|.++++|++|++++ |.++.+| ..|.++++|
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~-l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT-LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSS-CCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCC-cceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 4568889999999988887743 788999999987531 2357777788899999999998 8888775 468888999
Q ss_pred cEEEecCccccccccccccCccc---EEeCCCC-CCccCch-hhccccccc-eecccccccccccChhhhhcCcccceee
Q 002939 390 RTLCLDGCKLEDIRIIGELKELE---ILSLQGC-DIEHLPR-EIGQLTQLK-LLDLSYCFELKVIAPNVLSNLSQLEELY 463 (864)
Q Consensus 390 ~~L~L~~~~l~~l~~~~~l~~L~---~L~l~~~-~i~~lp~-~~~~l~~L~-~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 463 (864)
++|++++|.++.++.++.+++|+ +|++++| .++.+|. .+..+++|+ +|++++|. ++.+|+..+.. ++|++|+
T Consensus 108 ~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp CEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT-CEEEEEE
T ss_pred CEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCC-CCCCEEE
Confidence 99999999888887788888887 9999998 8887765 478888999 99998886 77888765555 7899999
Q ss_pred ccccc-ccc----ccccC-CcchhhhcCCCCccCCCCccCcccceeccccc
Q 002939 464 MATCC-IKW----EISNC-SLLEEIVGKEGGVEADPSFVFPRLTILQLCYL 508 (864)
Q Consensus 464 l~~~~-~~~----~~~~~-~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~ 508 (864)
+++|. +.. .+..+ ++|+.|+++.+.+...+...|++|+.|++.++
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCc
Confidence 98884 532 35566 67777777777666655556666666665553
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=8.3e-19 Score=183.90 Aligned_cols=124 Identities=17% Similarity=0.187 Sum_probs=72.8
Q ss_pred CceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccc--cCCcccc-------cCCCccEEEecCcccccc--ccc--
Q 002939 339 QLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLL--SLPSSIR-------LLTDLRTLCLDGCKLEDI--RII-- 405 (864)
Q Consensus 339 ~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~--~lp~~~~-------~l~~L~~L~L~~~~l~~l--~~~-- 405 (864)
+|+.+++.++.. .+|..+... |++|++++|.+. .+|..+. ++++|++|++++|.+++. ..+
T Consensus 44 ~L~~l~l~~n~l---~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 44 SLEYLLKRVDTE---ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp ECTTHHHHCCTT---CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CceeEeeccccc---ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 445555554333 455544332 666666666664 2444443 566666666666666542 222
Q ss_pred cccCcccEEeCCCCCCccCchhhccc-----cccceecccccccccccChhhhhcCcccceeecccccc
Q 002939 406 GELKELEILSLQGCDIEHLPREIGQL-----TQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCI 469 (864)
Q Consensus 406 ~~l~~L~~L~l~~~~i~~lp~~~~~l-----~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 469 (864)
+.+++|++|++++|+++.+|..++.+ ++|++|++++|. +..+++..++++++|++|++++|.+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCc
Confidence 66666666666666666556656555 666677776665 5666655566666666666666653
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=9.1e-17 Score=167.67 Aligned_cols=190 Identities=19% Similarity=0.230 Sum_probs=150.5
Q ss_pred hhhhccceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccE
Q 002939 312 KYLLKKCSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRT 391 (864)
Q Consensus 312 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~ 391 (864)
...++++++|+++++.+..++....+++|+.|+++++... .++. +..+++|++|++++|.+..+| .+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~--~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT--DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC--CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC--CChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 3357799999999999998886568899999999886544 3454 688999999999999998886 5889999999
Q ss_pred EEecCccccccccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecccccccc
Q 002939 392 LCLDGCKLEDIRIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW 471 (864)
Q Consensus 392 L~L~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 471 (864)
|++++|.++.++.+..+++|++|++++|.++.++. +..+++|++|++++|. +..+++ +.++++|++|++++|.+..
T Consensus 112 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred EECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccCc
Confidence 99999999998889999999999999999998875 8899999999999996 777766 8899999999999887653
Q ss_pred --ccccCCcchhhhcCCCCccCCCCccCcccceecccccccccccccccccccCCCcceEEEeeCC
Q 002939 472 --EISNCSLLEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCD 535 (864)
Q Consensus 472 --~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 535 (864)
.+..+ ++|+.|+++++ .+..... ...+++|+.|++++|+
T Consensus 188 ~~~l~~l---------------------~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 188 ISPLASL---------------------PNLIEVHLKNN-QISDVSP---LANTSNLFIVTLTNQT 228 (308)
T ss_dssp CGGGGGC---------------------TTCCEEECTTS-CCCBCGG---GTTCTTCCEEEEEEEE
T ss_pred ChhhcCC---------------------CCCCEEEccCC-ccCcccc---ccCCCCCCEEEccCCe
Confidence 23333 55555555553 2333321 3456777777777764
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=2e-16 Score=161.97 Aligned_cols=170 Identities=22% Similarity=0.364 Sum_probs=131.3
Q ss_pred cceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcc-cccCCCccEEEec
Q 002939 317 KCSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSS-IRLLTDLRTLCLD 395 (864)
Q Consensus 317 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-~~~l~~L~~L~L~ 395 (864)
..+.++++++.++.+|..+. ++++.|++.++... .++...|.++++|++|++++|.+..+|.. |.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLS--SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCS--CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCC--eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 46788888888888887664 67889999875544 56666778899999999999998888654 5888999999999
Q ss_pred Cccccccc--cccccCcccEEeCCCCCCccCch-hhccccccceecccccccccccChhhhhcCcccceeecccccccc-
Q 002939 396 GCKLEDIR--IIGELKELEILSLQGCDIEHLPR-EIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW- 471 (864)
Q Consensus 396 ~~~l~~l~--~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~- 471 (864)
+|.++.++ .+..+++|++|++++|.++.+|. .+..+++|++|++++|. +..+++..+..+++|++|++++|.+..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEe
Confidence 99888873 47888999999999998887754 46888999999999986 888888778888999999988887542
Q ss_pred ---ccccCCcchhhhcCCCCcc
Q 002939 472 ---EISNCSLLEEIVGKEGGVE 490 (864)
Q Consensus 472 ---~~~~~~~L~~L~~~~~~~~ 490 (864)
.+..+++|+.|+++.+.+.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCS
T ss_pred ChhHhccCCCcCEEECCCCcCC
Confidence 2344444444444444433
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=7.9e-17 Score=168.13 Aligned_cols=123 Identities=21% Similarity=0.331 Sum_probs=66.7
Q ss_pred cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEecCccccccccccccCcccEEe
Q 002939 336 ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDIRIIGELKELEILS 415 (864)
Q Consensus 336 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l~~~~~l~~L~~L~ 415 (864)
.+++|+.|++.++... .++. +..+++|++|++++|.+..++. +..+++|++|++++|.++.++.+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~--~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT--TIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSCCC--CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCCcc--Cchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEE
Confidence 4455566665553332 2221 3455566666666665555554 555556666666666555555555555666666
Q ss_pred CCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecccc
Q 002939 416 LQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATC 467 (864)
Q Consensus 416 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 467 (864)
+++|+++.+|. +..+++|++|++++|. +..+++ +..+++|++|++++|
T Consensus 114 l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 114 LTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNA 161 (308)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSS
T ss_pred CCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCC
Confidence 66655555543 5555555555555554 444443 455555555555444
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=1.7e-16 Score=163.34 Aligned_cols=210 Identities=25% Similarity=0.294 Sum_probs=138.5
Q ss_pred CCCCchhhcCCCCceEEEEeccccccCCc-ccccCCCccEEEecCccccccc--cccccCcccEEeCCCCCCccCc-hhh
Q 002939 353 LKIPDNIFMGMPKLKVLLFIRMRLLSLPS-SIRLLTDLRTLCLDGCKLEDIR--IIGELKELEILSLQGCDIEHLP-REI 428 (864)
Q Consensus 353 ~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~l~--~~~~l~~L~~L~l~~~~i~~lp-~~~ 428 (864)
..+|..+ .++|++|++++|.+..++. .|.++++|++|++++|.++.++ .+.++++|++|++++|.++.++ ..+
T Consensus 20 ~~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (276)
T 2z62_A 20 YKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (276)
T ss_dssp SSCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred cccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence 3466544 3578888888888887754 6888888888888888888773 5888888888888888888664 567
Q ss_pred ccccccceecccccccccccChhhhhcCcccceeeccccccccccccCCcchhhhcCCCCccCCCCccCcccceeccccc
Q 002939 429 GQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKWEISNCSLLEEIVGKEGGVEADPSFVFPRLTILQLCYL 508 (864)
Q Consensus 429 ~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~ 508 (864)
..+++|++|++++|. +..+++..++++++|++|++++|.+..
T Consensus 97 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------------------- 138 (276)
T 2z62_A 97 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQS------------------------------------- 138 (276)
T ss_dssp TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCC-------------------------------------
T ss_pred cCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccce-------------------------------------
Confidence 888888888888886 777766557788888888877765431
Q ss_pred ccccccccccccccCCCcceEEEeeCCCcccccccccccccccccCcccccCCCccccccchhhhcCCcc----eeeccc
Q 002939 509 PELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLE----ELRLSN 584 (864)
Q Consensus 509 ~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~----~L~l~~ 584 (864)
.........+++|+.|++++|..-...+..+. .+++|+ +|++++
T Consensus 139 -----~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------------------------~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 139 -----FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR---------------------------VLHQMPLLNLSLDLSL 186 (276)
T ss_dssp -----CCCCGGGGGCTTCCEEECCSSCCCEECGGGGH---------------------------HHHTCTTCCEEEECCS
T ss_pred -----ecCchhhccCCCCCEEECCCCCCCcCCHHHhh---------------------------hhhhccccceeeecCC
Confidence 00000122345556666555432211111111 133333 677777
Q ss_pred ccccccccccccCcccccCccEEEeecCCccccchhHHHHcccccEEEEEccccc
Q 002939 585 KKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSYK 639 (864)
Q Consensus 585 ~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 639 (864)
|. +.......+. ..+|++|++++|.++..++..+..+++|+.|++++|.+.
T Consensus 187 n~-l~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 187 NP-MNFIQPGAFK---EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SC-CCEECTTSSC---SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred Cc-ccccCccccC---CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 73 3222211111 347888888888888888777778888888888888773
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=1.9e-17 Score=173.51 Aligned_cols=213 Identities=16% Similarity=0.158 Sum_probs=138.3
Q ss_pred cceEEEeecCCcc--CCCCCC--------cCCCceEEEecCCCCCCCCCCchhh-cCCCCceEEEEeccccccCCccccc
Q 002939 317 KCSTISLHGNNIS--EIPQGW--------ECPQLEFFYIFAPEDSPLKIPDNIF-MGMPKLKVLLFIRMRLLSLPSSIRL 385 (864)
Q Consensus 317 ~l~~L~l~~~~~~--~~~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~~-~~l~~Lr~L~L~~~~i~~lp~~~~~ 385 (864)
.++.|++++|.+. .++... .+++|+.|++.++... ..+|..+| ..+++|++|++++|.+..+|..++.
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 142 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT-GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAE 142 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB-SCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHH
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc-chhHHHHHHhcCCCccEEEccCCCCcchhHHHHH
Confidence 3666666666664 233332 3667777777764433 23454443 6777777777777777766766666
Q ss_pred C-----CCccEEEecCcccccc--ccccccCcccEEeCCCCCCcc---Cchhh--ccccccceeccccccccc---ccCh
Q 002939 386 L-----TDLRTLCLDGCKLEDI--RIIGELKELEILSLQGCDIEH---LPREI--GQLTQLKLLDLSYCFELK---VIAP 450 (864)
Q Consensus 386 l-----~~L~~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~i~~---lp~~~--~~l~~L~~L~l~~~~~l~---~~~~ 450 (864)
+ ++|++|++++|.++.+ ..++++++|++|++++|++.. +|..+ ..+++|++|++++|. ++ .++.
T Consensus 143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~ 221 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCS 221 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHH
T ss_pred HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHH
Confidence 6 7777777777777766 357777777777777776542 34444 677777777777775 55 3333
Q ss_pred hhhhcCcccceeecccccccc-----ccccCCcchhhhcCCCCccCCCCccCcccceecccccccccccccccccccCCC
Q 002939 451 NVLSNLSQLEELYMATCCIKW-----EISNCSLLEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPM 525 (864)
Q Consensus 451 ~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 525 (864)
..+.++++|++|++++|.+.. .+..+++|+.|+++.+.++..+...+++|+.|+++++ .+...+. ...+++
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N-~l~~~p~---~~~l~~ 297 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYN-RLDRNPS---PDELPQ 297 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCSS-CCCSCCC---TTTSCE
T ss_pred HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCCC-CCCCChh---HhhCCC
Confidence 434566777777777776644 2334567777777777777655555578888888874 4555532 456788
Q ss_pred cceEEEeeCC
Q 002939 526 LTKLKVSCCD 535 (864)
Q Consensus 526 L~~L~l~~c~ 535 (864)
|+.|++++++
T Consensus 298 L~~L~L~~N~ 307 (312)
T 1wwl_A 298 VGNLSLKGNP 307 (312)
T ss_dssp EEEEECTTCT
T ss_pred CCEEeccCCC
Confidence 8888887653
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=2.2e-16 Score=162.95 Aligned_cols=171 Identities=19% Similarity=0.214 Sum_probs=133.0
Q ss_pred hccceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEe
Q 002939 315 LKKCSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCL 394 (864)
Q Consensus 315 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L 394 (864)
+.+++.++++++.++.+|..+. ++++.|++.++... .++...|..+++|++|++++|.+..++.. +.+++|++|++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLY--TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCS--EEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred cCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCC--ccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 4578889999999998887765 68889999875543 45566678899999999999998887654 78889999999
Q ss_pred cCccccccc-cccccCcccEEeCCCCCCccCc-hhhccccccceecccccccccccChhhhhcCcccceeecccccccc-
Q 002939 395 DGCKLEDIR-IIGELKELEILSLQGCDIEHLP-REIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW- 471 (864)
Q Consensus 395 ~~~~l~~l~-~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~- 471 (864)
++|.++.++ .+..+++|++|++++|+++.+| ..+..+++|++|++++|. ++.+++..+..+++|++|++++|.+..
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCcc
Confidence 999888874 4788889999999999888776 568888999999999986 888888878888899999988887642
Q ss_pred ---ccccCCcchhhhcCCCCcc
Q 002939 472 ---EISNCSLLEEIVGKEGGVE 490 (864)
Q Consensus 472 ---~~~~~~~L~~L~~~~~~~~ 490 (864)
.+..+++|+.|+++.|.+.
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC
T ss_pred CHHHhcCcCCCCEEECCCCcCC
Confidence 2344455555555554443
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=1.8e-16 Score=163.54 Aligned_cols=124 Identities=23% Similarity=0.288 Sum_probs=63.1
Q ss_pred CCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC-CcccccCCCccEEEecCccccccccccccCcccEEeC
Q 002939 338 PQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDGCKLEDIRIIGELKELEILSL 416 (864)
Q Consensus 338 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~l~~~~~l~~L~~L~l 416 (864)
++++.+++.++... .+|..+ .+.+++|++++|.+..+ |..|.++++|++|+|++|.++.++..+.+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~--~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLT--ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCS--SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred CCccEEECCCCCCC--cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence 44555555442222 344333 24555555555555544 3345555555555555555555544455555555555
Q ss_pred CCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecccc
Q 002939 417 QGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATC 467 (864)
Q Consensus 417 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 467 (864)
++|+++.+|..+..+++|++|++++|. ++.+++..+.++++|++|++++|
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCC
Confidence 555555555555555555555555553 55554444555555555554443
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=2.2e-16 Score=162.49 Aligned_cols=154 Identities=24% Similarity=0.285 Sum_probs=118.2
Q ss_pred hhccceEEEeecCCccCCCCC-C-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCC-cccccCCCcc
Q 002939 314 LLKKCSTISLHGNNISEIPQG-W-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLP-SSIRLLTDLR 390 (864)
Q Consensus 314 ~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~ 390 (864)
.+.++++|++++|.++.++.. + .+++|++|++.++... .++...|.++++|++|++++|.+..++ ..|.++++|+
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC--ccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 445788888888888877653 3 7788888888875433 566666788888888888888888664 5688888888
Q ss_pred EEEecCccccccc--cccccCcccEEeCCCCCCcc--CchhhccccccceecccccccccccChhhhhcCcccc----ee
Q 002939 391 TLCLDGCKLEDIR--IIGELKELEILSLQGCDIEH--LPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLE----EL 462 (864)
Q Consensus 391 ~L~L~~~~l~~l~--~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~----~L 462 (864)
+|++++|.++.+. .++.+++|++|++++|.++. +|..+..+++|++|++++|. +..+++..+..+++|+ .|
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEE
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceee
Confidence 8888888888773 47888888888888888875 67888888888888888886 7777766677777776 67
Q ss_pred eccccccc
Q 002939 463 YMATCCIK 470 (864)
Q Consensus 463 ~l~~~~~~ 470 (864)
++++|.+.
T Consensus 183 ~ls~n~l~ 190 (276)
T 2z62_A 183 DLSLNPMN 190 (276)
T ss_dssp ECCSSCCC
T ss_pred ecCCCccc
Confidence 77777654
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=3.7e-16 Score=160.01 Aligned_cols=173 Identities=24% Similarity=0.387 Sum_probs=145.6
Q ss_pred hhhccceEEEeecCCccCCCCC-C-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCc-ccccCCCc
Q 002939 313 YLLKKCSTISLHGNNISEIPQG-W-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPS-SIRLLTDL 389 (864)
Q Consensus 313 ~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L 389 (864)
..+.++++|++++|.+..++.. + .+++|++|++.++... .++..+|..+++|++|++++|.+..+|. .|.++++|
T Consensus 34 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 111 (270)
T 2o6q_A 34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ--TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL 111 (270)
T ss_dssp CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS--CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSC
T ss_pred CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC--eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCC
Confidence 3456899999999999988863 3 8899999999985544 6888888999999999999999998864 57899999
Q ss_pred cEEEecCcccccc--ccccccCcccEEeCCCCCCccCchh-hccccccceecccccccccccChhhhhcCcccceeeccc
Q 002939 390 RTLCLDGCKLEDI--RIIGELKELEILSLQGCDIEHLPRE-IGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMAT 466 (864)
Q Consensus 390 ~~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 466 (864)
++|++++|.++.+ ..++.+++|++|++++|.++.+|.. +..+++|++|++++|. +..+++..+.++++|++|++++
T Consensus 112 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDN 190 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCC
Confidence 9999999999988 3489999999999999999988765 7899999999999996 8889888789999999999999
Q ss_pred ccccc----ccccCCcchhhhcCCCC
Q 002939 467 CCIKW----EISNCSLLEEIVGKEGG 488 (864)
Q Consensus 467 ~~~~~----~~~~~~~L~~L~~~~~~ 488 (864)
|.+.. .+..+++|+.|.+++|.
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 191 NQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCcCCHHHhccccCCCEEEecCCC
Confidence 98653 24445555555554443
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=3.6e-16 Score=157.01 Aligned_cols=207 Identities=14% Similarity=0.097 Sum_probs=162.1
Q ss_pred cCcccccCccEEEeecCCccccchhHHHHcccccEEEEEccc-cccccccccchhhhcccccccceeecCCCcCcccccc
Q 002939 596 FPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGS-YKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWL 674 (864)
Q Consensus 596 ~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~ 674 (864)
+|. ..++|++|++++|.+..+++..+..+++|++|++++|. ++.++ +..+..+++|+.|++++|+.++.+
T Consensus 26 ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~------~~~f~~l~~L~~L~l~~~n~l~~i-- 96 (239)
T 2xwt_C 26 IPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE------SHSFYNLSKVTHIEIRNTRNLTYI-- 96 (239)
T ss_dssp CCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC------TTTEESCTTCCEEEEEEETTCCEE--
T ss_pred cCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC------HhHcCCCcCCcEEECCCCCCeeEc--
Confidence 344 45689999999999999998778899999999999886 85443 235778999999999987778776
Q ss_pred ccccccccccccCccEEEeecccccccccCCccccCCcc---EEEEecCcCceeeechhhhhhhcccc-EEEecCccchH
Q 002939 675 WEENSKLNMIFQNLETLDISFCRNLKNLLPSSASFRCLT---KLSVWCCEQLINLVTSSAAKNLVQLV-TMKVDGCSKIT 750 (864)
Q Consensus 675 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~---~L~l~~c~~l~~~~~~~~~~~l~~L~-~L~l~~c~~l~ 750 (864)
.......+++|++|++++ +.++.++. +..+++|+ .|++++++.+..++ +..+..+++|+ +|+++++ .++
T Consensus 97 ---~~~~f~~l~~L~~L~l~~-n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~-~~~~~~l~~L~~~L~l~~n-~l~ 169 (239)
T 2xwt_C 97 ---DPDALKELPLLKFLGIFN-TGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIP-VNAFQGLCNETLTLKLYNN-GFT 169 (239)
T ss_dssp ---CTTSEECCTTCCEEEEEE-ECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEEC-TTTTTTTBSSEEEEECCSC-CCC
T ss_pred ---CHHHhCCCCCCCEEeCCC-CCCccccc-cccccccccccEEECCCCcchhhcC-cccccchhcceeEEEcCCC-CCc
Confidence 223455689999999999 56777755 67788888 99999876888874 45678899999 9999986 445
Q ss_pred HhhhccccccCcceeeccccCeeecCccccccccccCCceeec-CccceeecccCCCccccccCcccCCccceEeeCCcc
Q 002939 751 ELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFCSANYTFKF-PSLCYLSVSACPKMKIFCRGVLSAPRLEKVRLNDQN 829 (864)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~-~~L~~L~i~~C~~l~~lp~~~~~~~~L~~l~l~~~~ 829 (864)
.++...+. .++|+.|++++++.++.++.. .+..+ ++|++|++++++ ++.+|.. .+++|+.|++++.|
T Consensus 170 ~i~~~~~~--------~~~L~~L~L~~n~~l~~i~~~-~~~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 170 SVQGYAFN--------GTKLDAVYLNKNKYLTVIDKD-AFGGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EECTTTTT--------TCEEEEEECTTCTTCCEECTT-TTTTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC-
T ss_pred ccCHhhcC--------CCCCCEEEcCCCCCcccCCHH-HhhccccCCcEEECCCCc-cccCChh--HhccCceeeccCcc
Confidence 66533332 368999999996679998764 45677 999999998854 7788876 58999999999877
Q ss_pred c
Q 002939 830 Y 830 (864)
Q Consensus 830 ~ 830 (864)
.
T Consensus 238 ~ 238 (239)
T 2xwt_C 238 T 238 (239)
T ss_dssp -
T ss_pred C
Confidence 4
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=5.6e-16 Score=158.78 Aligned_cols=154 Identities=25% Similarity=0.373 Sum_probs=128.2
Q ss_pred hhhhccceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCc-ccccCCCcc
Q 002939 312 KYLLKKCSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPS-SIRLLTDLR 390 (864)
Q Consensus 312 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~ 390 (864)
...+.+++.|++.++.+..++....+++|+.|++.++.... ++ .+..+++|++|++++|.+..+|. .+.++++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~--~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD--IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC--CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC--ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 44577899999999998888876688999999998865543 32 46789999999999999988755 478899999
Q ss_pred EEEecCccccccc--cccccCcccEEeCCCCCCccCchh-hccccccceecccccccccccChhhhhcCcccceeecccc
Q 002939 391 TLCLDGCKLEDIR--IIGELKELEILSLQGCDIEHLPRE-IGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATC 467 (864)
Q Consensus 391 ~L~L~~~~l~~l~--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 467 (864)
+|++++|.++.++ .++++++|++|++++|+++.+|.. +..+++|++|++++|. ++.+++..++.+++|++|++++|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCC
Confidence 9999999988873 378899999999999998877654 5789999999999996 88888877888999999999888
Q ss_pred ccc
Q 002939 468 CIK 470 (864)
Q Consensus 468 ~~~ 470 (864)
.+.
T Consensus 192 ~l~ 194 (272)
T 3rfs_A 192 QLK 194 (272)
T ss_dssp CCS
T ss_pred cCC
Confidence 764
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=5.1e-16 Score=159.06 Aligned_cols=179 Identities=23% Similarity=0.337 Sum_probs=151.2
Q ss_pred cchhhhhhhccceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcc-ccc
Q 002939 307 RKWADKYLLKKCSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSS-IRL 385 (864)
Q Consensus 307 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-~~~ 385 (864)
..++....++++++|++++|.+..++....+++|++|++.++... .++...|..+++|++|++++|.+..+|.. +++
T Consensus 54 ~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 131 (272)
T 3rfs_A 54 KSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ--SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK 131 (272)
T ss_dssp CCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred ccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccC--ccChhHhcCCcCCCEEECCCCcCCccCHHHhcc
Confidence 344445668899999999999998876668999999999986544 57777789999999999999999988654 799
Q ss_pred CCCccEEEecCccccccc--cccccCcccEEeCCCCCCccCchh-hccccccceecccccccccccChhhhhcCccccee
Q 002939 386 LTDLRTLCLDGCKLEDIR--IIGELKELEILSLQGCDIEHLPRE-IGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEEL 462 (864)
Q Consensus 386 l~~L~~L~L~~~~l~~l~--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L 462 (864)
+++|++|++++|.++.++ .++.+++|++|++++|+++.+|.. +..+++|++|++++|. +..+++..+.++++|++|
T Consensus 132 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 210 (272)
T 3rfs_A 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYI 210 (272)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEE
Confidence 999999999999999884 378999999999999999987654 6889999999999997 888888878999999999
Q ss_pred eccccccccccccCCcchhhhcCCCCccC
Q 002939 463 YMATCCIKWEISNCSLLEEIVGKEGGVEA 491 (864)
Q Consensus 463 ~l~~~~~~~~~~~~~~L~~L~~~~~~~~~ 491 (864)
++++|.+. +.|++++.+....+.+.+
T Consensus 211 ~l~~N~~~---~~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 211 WLHDNPWD---CTCPGIRYLSEWINKHSG 236 (272)
T ss_dssp ECCSSCBC---CCTTTTHHHHHHHHHTGG
T ss_pred EccCCCcc---ccCcHHHHHHHHHHhCCC
Confidence 99999875 456677777665554443
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=6.9e-16 Score=159.42 Aligned_cols=169 Identities=21% Similarity=0.275 Sum_probs=139.6
Q ss_pred hhhhccceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccE
Q 002939 312 KYLLKKCSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRT 391 (864)
Q Consensus 312 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~ 391 (864)
...+.+++.|++++|.+..++....+++|+.|+++++... .++. +..+++|++|++++|.+..+|. +..+++|++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~--~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT--DIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC--CCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccC--CCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence 3457889999999999998887668999999999986554 3444 6899999999999999998765 899999999
Q ss_pred EEecCccccccccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecccccccc
Q 002939 392 LCLDGCKLEDIRIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW 471 (864)
Q Consensus 392 L~L~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 471 (864)
|++++|.++.++.+..+++|++|++++|+++.+ ..+..+++|++|++++|. +..+++ +..+++|++|++++|.+..
T Consensus 117 L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred EECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCCC
Confidence 999999999998899999999999999999988 478899999999999996 888766 8899999999999998653
Q ss_pred --ccccCCcchhhhcCCCCc
Q 002939 472 --EISNCSLLEEIVGKEGGV 489 (864)
Q Consensus 472 --~~~~~~~L~~L~~~~~~~ 489 (864)
.+..+++|+.|+++++.+
T Consensus 193 l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 193 LRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CGGGTTCTTCSEEEEEEEEE
T ss_pred ChhhccCCCCCEEECcCCcc
Confidence 244444444444444433
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=1.2e-15 Score=154.41 Aligned_cols=168 Identities=24% Similarity=0.328 Sum_probs=122.0
Q ss_pred cceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCC-cccccCCCccEEEec
Q 002939 317 KCSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLP-SSIRLLTDLRTLCLD 395 (864)
Q Consensus 317 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~ 395 (864)
..++++++++.++.+|..+. +.++.|++.++... .++...|.++++|++|++++|.+..++ ..|.++++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLA--TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcC--ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45677888888888887665 57888888775544 455556778888888888888888664 447888888888888
Q ss_pred Ccccccc--ccccccCcccEEeCCCCCCccCchh-hccccccceecccccccccccChhhhhcCcccceeecccccccc-
Q 002939 396 GCKLEDI--RIIGELKELEILSLQGCDIEHLPRE-IGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW- 471 (864)
Q Consensus 396 ~~~l~~l--~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~- 471 (864)
+|.++.+ ..+..+++|++|++++|+++.+|.. +..+++|++|++++|. ++.+++..++++++|++|++++|.+..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 8888776 3467888888888888888877654 5778888888888885 777777667788888888888876542
Q ss_pred ---ccccCCcchhhhcCCCC
Q 002939 472 ---EISNCSLLEEIVGKEGG 488 (864)
Q Consensus 472 ---~~~~~~~L~~L~~~~~~ 488 (864)
.+..+++|+.|.+++|.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCC
T ss_pred CHHHHhCCCCCCEEEeeCCc
Confidence 23444444444444443
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=2.3e-15 Score=160.39 Aligned_cols=101 Identities=21% Similarity=0.308 Sum_probs=69.1
Q ss_pred eEEEEeccccccCCcccccCCCccEEEecCccccccc--cccccCcccEEeCCCCCCc-cCch-hhccccccceeccccc
Q 002939 367 KVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDIR--IIGELKELEILSLQGCDIE-HLPR-EIGQLTQLKLLDLSYC 442 (864)
Q Consensus 367 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l~--~~~~l~~L~~L~l~~~~i~-~lp~-~~~~l~~L~~L~l~~~ 442 (864)
++++.++++++++|..+ .+++++|+|++|+|+.++ .|.++++|++|+|++|++. .+|. .+..+++|+++....+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 45667777777777655 356777777777777773 4777777777777777764 4543 4567777766444433
Q ss_pred ccccccChhhhhcCcccceeecccccc
Q 002939 443 FELKVIAPNVLSNLSQLEELYMATCCI 469 (864)
Q Consensus 443 ~~l~~~~~~~l~~l~~L~~L~l~~~~~ 469 (864)
..+..+++..+..+++|++|++++|.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l 116 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGI 116 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECC
T ss_pred CcccccCchhhhhcccccccccccccc
Confidence 347777777777888888888777654
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.61 E-value=2.5e-16 Score=170.68 Aligned_cols=83 Identities=14% Similarity=0.079 Sum_probs=45.2
Q ss_pred cCCCCceEEEEecccccc-----CCcccccCCCccEEEecCcccccc------------ccccccCcccEEeCCCCCCcc
Q 002939 361 MGMPKLKVLLFIRMRLLS-----LPSSIRLLTDLRTLCLDGCKLEDI------------RIIGELKELEILSLQGCDIEH 423 (864)
Q Consensus 361 ~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~l~~l------------~~~~~l~~L~~L~l~~~~i~~ 423 (864)
..+++|++|+|++|.+.. ++..+..+++|++|+|++|.+..+ ..+..+++|++|+|++|.+..
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 445556666666665542 233345566666666666533321 112455666666666665553
Q ss_pred -----Cchhhccccccceecccccc
Q 002939 424 -----LPREIGQLTQLKLLDLSYCF 443 (864)
Q Consensus 424 -----lp~~~~~l~~L~~L~l~~~~ 443 (864)
+|..+..+++|++|++++|.
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCC
Confidence 45555666666666666664
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=1.3e-16 Score=169.61 Aligned_cols=247 Identities=18% Similarity=0.149 Sum_probs=155.5
Q ss_pred CceEEEecCCCCCCCCCCchhhcCC--CCceEEEEeccccccCCcccccCCCccEEEecCccccc--c-ccccccCcccE
Q 002939 339 QLEFFYIFAPEDSPLKIPDNIFMGM--PKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLED--I-RIIGELKELEI 413 (864)
Q Consensus 339 ~L~~L~l~~~~~~~~~~~~~~~~~l--~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~--l-~~~~~l~~L~~ 413 (864)
.++.+++.++.. .+..+..+ +++++|+++++.+...+..+..+++|++|++++|.++. + ..+..+++|++
T Consensus 48 ~~~~l~l~~~~~-----~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNL-----HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBC-----CHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccC-----CHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 467788876332 24555666 89999999999999887778889999999999998875 4 45888999999
Q ss_pred EeCCCCCCc-cCchhhccccccceeccccccccccc-ChhhhhcCcccceeecccc-ccccc-cccCCcchhhhcCCCCc
Q 002939 414 LSLQGCDIE-HLPREIGQLTQLKLLDLSYCFELKVI-APNVLSNLSQLEELYMATC-CIKWE-ISNCSLLEEIVGKEGGV 489 (864)
Q Consensus 414 L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~-~~~~~-~~~~~~L~~L~~~~~~~ 489 (864)
|++++|.++ ..|..++.+++|++|++++|..++.. .+..+.++++|++|++++| .+... +..
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-------------- 188 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-------------- 188 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH--------------
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH--------------
Confidence 999999988 67888899999999999999546641 2444788999999999988 65421 000
Q ss_pred cCCCCccCc-ccceecccccc-cccccccccccccCCCcceEEEeeCCCcccccccccccccccccCcccccCCCccccc
Q 002939 490 EADPSFVFP-RLTILQLCYLP-ELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSL 567 (864)
Q Consensus 490 ~~~~~~~~~-~L~~L~l~~~~-~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (864)
....++ +|+.|+++++. .+...........+++|+.|++++|..++.....
T Consensus 189 ---~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~------------------------ 241 (336)
T 2ast_B 189 ---AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ------------------------ 241 (336)
T ss_dssp ---HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG------------------------
T ss_pred ---HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH------------------------
Confidence 011234 56666666553 2221111112334667777777776543321110
Q ss_pred cchhhhcCCcceeecccccccccccccccCcccccCccEEEeecCCccccchhHHHHc-ccccEEEEEccccc
Q 002939 568 FLVEKVLPNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAPDLLERF-HNLVNLELADGSYK 639 (864)
Q Consensus 568 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~ 639 (864)
....+++|++|++++|..+.......+ ..+++|++|++++| + +...+..+ .+|+.|++++|.++
T Consensus 242 --~l~~l~~L~~L~l~~~~~~~~~~~~~l--~~~~~L~~L~l~~~-i---~~~~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 242 --EFFQLNYLQHLSLSRCYDIIPETLLEL--GEIPTLKTLQVFGI-V---PDGTLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp --GGGGCTTCCEEECTTCTTCCGGGGGGG--GGCTTCCEEECTTS-S---CTTCHHHHHHHSTTSEESCCCSC
T ss_pred --HHhCCCCCCEeeCCCCCCCCHHHHHHH--hcCCCCCEEeccCc-c---CHHHHHHHHhhCcceEEecccCc
Confidence 011256777777777742221110011 12566777777666 2 22222223 23555556666664
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.61 E-value=3.9e-15 Score=150.53 Aligned_cols=156 Identities=19% Similarity=0.315 Sum_probs=137.5
Q ss_pred hhhccceEEEeecCCccCCCCCC--cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCC-cccccCCCc
Q 002939 313 YLLKKCSTISLHGNNISEIPQGW--ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLP-SSIRLLTDL 389 (864)
Q Consensus 313 ~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L 389 (864)
..+..++.|++++|.+..++... .+++|+.|+++++... .++...|..+++|++|++++|.+..+| ..|..+++|
T Consensus 32 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 109 (251)
T 3m19_A 32 GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ--TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL 109 (251)
T ss_dssp CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC--ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC
Confidence 34568999999999999887643 7899999999986554 467777899999999999999999886 457999999
Q ss_pred cEEEecCccccccc--cccccCcccEEeCCCCCCccCch-hhccccccceecccccccccccChhhhhcCcccceeeccc
Q 002939 390 RTLCLDGCKLEDIR--IIGELKELEILSLQGCDIEHLPR-EIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMAT 466 (864)
Q Consensus 390 ~~L~L~~~~l~~l~--~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 466 (864)
++|+|++|.++.++ .+..+++|++|++++|+++.+|. .+..+++|++|++++|. +..+++..+.++++|++|++++
T Consensus 110 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeC
Confidence 99999999999884 37899999999999999998876 68899999999999997 8899888899999999999999
Q ss_pred ccccc
Q 002939 467 CCIKW 471 (864)
Q Consensus 467 ~~~~~ 471 (864)
|.+..
T Consensus 189 N~~~c 193 (251)
T 3m19_A 189 NQFDC 193 (251)
T ss_dssp CCBCT
T ss_pred CceeC
Confidence 98753
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=5.1e-15 Score=144.94 Aligned_cols=168 Identities=22% Similarity=0.313 Sum_probs=140.7
Q ss_pred eEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcc-cccCCCccEEEecCc
Q 002939 319 STISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSS-IRLLTDLRTLCLDGC 397 (864)
Q Consensus 319 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~ 397 (864)
+.+..+++.++.+|..+ .++++.|++.++... .++...|..+++|++|++++|.+..+|.. |.++++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLK--SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccC--cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 45777888888888766 368999999986554 57777789999999999999999988654 689999999999999
Q ss_pred cccccc--cccccCcccEEeCCCCCCccCchh-hccccccceecccccccccccChhhhhcCcccceeeccccccccccc
Q 002939 398 KLEDIR--IIGELKELEILSLQGCDIEHLPRE-IGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKWEIS 474 (864)
Q Consensus 398 ~l~~l~--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 474 (864)
.++.++ .+.++++|++|++++|+++.+|.. +..+++|++|++++|. ++.+++..+.++++|++|++++|.+. +
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~---~ 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD---C 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC---C
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee---c
Confidence 999873 378999999999999999988655 6889999999999996 88888887899999999999999764 5
Q ss_pred cCCcchhhhcCCCCccCCC
Q 002939 475 NCSLLEEIVGKEGGVEADP 493 (864)
Q Consensus 475 ~~~~L~~L~~~~~~~~~~~ 493 (864)
.|++|+.|....+.+.+..
T Consensus 163 ~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 163 TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp CTTTTHHHHHHHHHCTTTB
T ss_pred CCCCHHHHHHHHHhCCcee
Confidence 6777888877766655433
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=3.3e-15 Score=169.32 Aligned_cols=181 Identities=20% Similarity=0.259 Sum_probs=151.6
Q ss_pred hhhhccceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccE
Q 002939 312 KYLLKKCSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRT 391 (864)
Q Consensus 312 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~ 391 (864)
...+..++.|++++|.+..++....+++|+.|+++++... .++. +..+++|+.|+|++|.+..+| .+..+++|++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~--~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT--DIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCC--CCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCC--CChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 4457789999999999999887668999999999986554 3444 688999999999999999877 6899999999
Q ss_pred EEecCccccccccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecccccccc
Q 002939 392 LCLDGCKLEDIRIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW 471 (864)
Q Consensus 392 L~L~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 471 (864)
|+|++|.+..++.+..+++|+.|+|++|.++.+ ..+..+++|++|+|++|. +..+++ +..+++|++|+|++|.+..
T Consensus 114 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp EECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred EEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCCC
Confidence 999999999998899999999999999999988 578899999999999996 777766 8899999999999998754
Q ss_pred --ccccCCcchhhhcCCCCccCCCCccCcccc
Q 002939 472 --EISNCSLLEEIVGKEGGVEADPSFVFPRLT 501 (864)
Q Consensus 472 --~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~ 501 (864)
.+..+++|+.|.++.+.+...+...+.++.
T Consensus 190 l~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~ 221 (605)
T 1m9s_A 190 LRALAGLKNLDVLELFSQECLNKPINHQSNLV 221 (605)
T ss_dssp CGGGTTCTTCSEEECCSEEEECCCCCCCSSCE
T ss_pred ChHHccCCCCCEEEccCCcCcCCcccccccEE
Confidence 577778888888888777666555444443
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=4.9e-15 Score=147.10 Aligned_cols=150 Identities=25% Similarity=0.326 Sum_probs=133.6
Q ss_pred cceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCc-ccccCCCccEEEec
Q 002939 317 KCSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPS-SIRLLTDLRTLCLD 395 (864)
Q Consensus 317 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~ 395 (864)
..+.++.+++.+..+|..+. ++|+.|+++++... .++...|..+++|++|+|++|.+..+|. .|.++++|++|+|+
T Consensus 20 s~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP-TNAQILYLHDNQIT--KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcCccCCCCC-CCCCEEEcCCCccC--ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 34568899999999998775 89999999986554 4666678999999999999999999875 47999999999999
Q ss_pred Cccccccc--cccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeeccccccc
Q 002939 396 GCKLEDIR--IIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIK 470 (864)
Q Consensus 396 ~~~l~~l~--~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 470 (864)
+|.++.++ .+..+++|++|++++|+++.+|..+..+++|++|++++|. +..+++..+..+++|+.|++++|.+.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 99999983 3789999999999999999999999999999999999996 88998888999999999999999875
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=5.7e-16 Score=164.70 Aligned_cols=225 Identities=16% Similarity=0.178 Sum_probs=148.9
Q ss_pred CCcceeecccccccccccccccCcccccCccEEEeecCCcccc-chhHHHHcccccEEEEEccccccccccccchhhhcc
Q 002939 575 PNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVL-APDLLERFHNLVNLELADGSYKELFSNEGQVEKLVG 653 (864)
Q Consensus 575 ~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~ 653 (864)
++++.|++++|. +...... ...+++|++|++++|.+... .+..+..+++|++|++++|.++ +..+..+.
T Consensus 70 ~~l~~L~l~~n~-l~~~~~~---~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~------~~~~~~l~ 139 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQPLAE---HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS------DPIVNTLA 139 (336)
T ss_dssp TTCSEEECTTCE-ECSCCCS---CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC------HHHHHHHT
T ss_pred ccceEEEcCCcc-ccccchh---hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC------HHHHHHHh
Confidence 788888888884 2222111 11268899999988887654 5566788899999999988773 45666777
Q ss_pred cccccceeecCCCcCccccccccccccccccccCccEEEeeccccccc--ccCCccccC-CccEEEEecCc-Cceeeech
Q 002939 654 KLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKN--LLPSSASFR-CLTKLSVWCCE-QLINLVTS 729 (864)
Q Consensus 654 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~-~L~~L~l~~c~-~l~~~~~~ 729 (864)
.+++|+.|++++|..++.. ........+++|++|++++|..+++ ++.....++ +|++|++++|. .+++...+
T Consensus 140 ~~~~L~~L~L~~~~~l~~~----~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~ 215 (336)
T 2ast_B 140 KNSNLVRLNLSGCSGFSEF----ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 215 (336)
T ss_dssp TCTTCSEEECTTCBSCCHH----HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH
T ss_pred cCCCCCEEECCCCCCCCHH----HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH
Confidence 8889999999887666531 0112234578888888888756664 344456778 88888888875 45432224
Q ss_pred hhhhhhccccEEEecCccchHHhhhccccccCcceeeccccCeeecCccccccccccCCceeecCccceeecccCCCccc
Q 002939 730 SAAKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFFPKLESLDLNRLQSLTTFCSANYTFKFPSLCYLSVSACPKMKI 809 (864)
Q Consensus 730 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~ 809 (864)
..+..+++|++|++++|..+++.....+.. +++|+.|++++|..++.... ..+.++++|++|++++|
T Consensus 216 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-------l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~----- 282 (336)
T 2ast_B 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-------LNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI----- 282 (336)
T ss_dssp HHHHHCTTCSEEECTTCTTCCGGGGGGGGG-------CTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTS-----
T ss_pred HHHhhCCCCCEEeCCCCCcCCHHHHHHHhC-------CCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEeccCc-----
Confidence 456778888888888887555433233333 68888888888875544322 13456888888888888
Q ss_pred cccC-cccC-CccceEeeC
Q 002939 810 FCRG-VLSA-PRLEKVRLN 826 (864)
Q Consensus 810 lp~~-~~~~-~~L~~l~l~ 826 (864)
++.. +..+ .+|+.|+++
T Consensus 283 i~~~~~~~l~~~l~~L~l~ 301 (336)
T 2ast_B 283 VPDGTLQLLKEALPHLQIN 301 (336)
T ss_dssp SCTTCHHHHHHHSTTSEES
T ss_pred cCHHHHHHHHhhCcceEEe
Confidence 3332 2222 336666665
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=1.4e-14 Score=140.36 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=128.6
Q ss_pred hhhccceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEecccccc-CCcccccCCCccE
Q 002939 313 YLLKKCSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLS-LPSSIRLLTDLRT 391 (864)
Q Consensus 313 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~~~~l~~L~~ 391 (864)
..+.++++|++++|.+..++....+++|+.|++.++... .+ . .+..+++|++|++++|.+.. .|..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~--~~-~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT--NY-N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS--CC-G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC--cc-h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 457899999999999999995558999999999986332 23 2 46889999999999999985 5888999999999
Q ss_pred EEecCccccc--cccccccCcccEEeCCCCC-CccCchhhccccccceecccccccccccChhhhhcCcccceeeccccc
Q 002939 392 LCLDGCKLED--IRIIGELKELEILSLQGCD-IEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCC 468 (864)
Q Consensus 392 L~L~~~~l~~--l~~~~~l~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 468 (864)
|++++|.+++ +..++.+++|++|++++|. ++.+| .+..+++|++|++++|. +..++ .+..+++|++|++++|.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~--~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR--GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT--TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH--HhccCCCCCEEEeeCcc
Confidence 9999999987 4779999999999999997 88888 78999999999999997 88776 38899999999999987
Q ss_pred cc
Q 002939 469 IK 470 (864)
Q Consensus 469 ~~ 470 (864)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 54
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.57 E-value=9.6e-15 Score=143.88 Aligned_cols=148 Identities=23% Similarity=0.319 Sum_probs=131.1
Q ss_pred eEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC-CcccccCCCccEEEecCc
Q 002939 319 STISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDGC 397 (864)
Q Consensus 319 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~ 397 (864)
+.++++++.++.+|..+. ++++.|++.++... .++...|..+++|++|+|++|.+..+ |..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~--~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK--VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCC--EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCC--CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 468888999999998765 78999999986544 57777789999999999999999977 788999999999999999
Q ss_pred cccccc--cccccCcccEEeCCCCCCccC-chhhccccccceecccccccccccChhhhhcCcccceeeccccccc
Q 002939 398 KLEDIR--IIGELKELEILSLQGCDIEHL-PREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIK 470 (864)
Q Consensus 398 ~l~~l~--~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 470 (864)
.++.++ .+..+++|++|++++|+++.+ |..+..+++|++|++++|. ++.+++..+..+++|++|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 999884 378999999999999999977 6678999999999999997 88898888999999999999998864
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=4.2e-15 Score=155.58 Aligned_cols=170 Identities=15% Similarity=0.087 Sum_probs=85.4
Q ss_pred cCCCCceEEEEeccccccC-C----cccccCCCccEEEecCcccccc--ccccccCcccEEeCCCCCCcc---Cch--hh
Q 002939 361 MGMPKLKVLLFIRMRLLSL-P----SSIRLLTDLRTLCLDGCKLEDI--RIIGELKELEILSLQGCDIEH---LPR--EI 428 (864)
Q Consensus 361 ~~l~~Lr~L~L~~~~i~~l-p----~~~~~l~~L~~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~i~~---lp~--~~ 428 (864)
..+++|++|++++|.+... | ..+..+++|++|++++|.++.+ ..++.+++|++|++++|++.. ++. .+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 4455555555555555421 1 1223455555555555555444 234455555555555554431 211 12
Q ss_pred ccccccceecccccccccccChh---hhhcCcccceeeccccccccc----cccC---CcchhhhcCCCCccCCCCccCc
Q 002939 429 GQLTQLKLLDLSYCFELKVIAPN---VLSNLSQLEELYMATCCIKWE----ISNC---SLLEEIVGKEGGVEADPSFVFP 498 (864)
Q Consensus 429 ~~l~~L~~L~l~~~~~l~~~~~~---~l~~l~~L~~L~l~~~~~~~~----~~~~---~~L~~L~~~~~~~~~~~~~~~~ 498 (864)
..+++|++|++++|. ++.++.. .++++++|++|++++|.+... +..+ ++|+.|+++.|.+...+...++
T Consensus 194 ~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~ 272 (310)
T 4glp_A 194 HKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPA 272 (310)
T ss_dssp TSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCS
T ss_pred hcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcC
Confidence 345555555555553 4333221 234445555555555544321 3333 3555555555555554444557
Q ss_pred ccceecccccccccccccccccccCCCcceEEEeeCC
Q 002939 499 RLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCD 535 (864)
Q Consensus 499 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 535 (864)
+|+.|+++++ .+..++. ...+++|+.|++++++
T Consensus 273 ~L~~L~Ls~N-~l~~~~~---~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 273 KLRVLDLSSN-RLNRAPQ---PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSCEECCSC-CCCSCCC---TTSCCCCSCEECSSTT
T ss_pred CCCEEECCCC-cCCCCch---hhhCCCccEEECcCCC
Confidence 7888888774 3444322 3456788888887654
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.56 E-value=4.2e-15 Score=159.28 Aligned_cols=246 Identities=12% Similarity=0.085 Sum_probs=139.7
Q ss_pred chhhcCCCCceEEEEeccccccCC-----cccccCC-CccEEEecCcccccc--cccccc-----CcccEEeCCCCCCcc
Q 002939 357 DNIFMGMPKLKVLLFIRMRLLSLP-----SSIRLLT-DLRTLCLDGCKLEDI--RIIGEL-----KELEILSLQGCDIEH 423 (864)
Q Consensus 357 ~~~~~~l~~Lr~L~L~~~~i~~lp-----~~~~~l~-~L~~L~L~~~~l~~l--~~~~~l-----~~L~~L~l~~~~i~~ 423 (864)
+.++...++|++|+|++|.+...+ ..+.+++ +|++|+|++|.++.. ..+..+ ++|++|++++|.++.
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 344455666888888888888765 5667777 788888888887764 345544 888888888888774
Q ss_pred C-chh----hccc-cccceecccccccccccChhhhhc-----CcccceeeccccccccccccCCcchhhhcCCCCccCC
Q 002939 424 L-PRE----IGQL-TQLKLLDLSYCFELKVIAPNVLSN-----LSQLEELYMATCCIKWEISNCSLLEEIVGKEGGVEAD 492 (864)
Q Consensus 424 l-p~~----~~~l-~~L~~L~l~~~~~l~~~~~~~l~~-----l~~L~~L~l~~~~~~~~~~~~~~L~~L~~~~~~~~~~ 492 (864)
. +.. +..+ ++|++|++++|. ++..+...+.. .++|++|++++|.+...- ...+
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-----~~~l---------- 158 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS-----SDEL---------- 158 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC-----HHHH----------
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH-----HHHH----------
Confidence 3 333 3334 788888888886 66666544433 257888887777654200 0000
Q ss_pred CCccCcccceecccccccccccccccccccC-CCcceEEEeeCCCcccccccccccccccccCcccccCCCccccccchh
Q 002939 493 PSFVFPRLTILQLCYLPELRAFYPGIHTLEC-PMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFLVE 571 (864)
Q Consensus 493 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (864)
.. ..... ++|++|++++|..-...+..+ ....
T Consensus 159 ----------------------~~--~l~~~~~~L~~L~Ls~n~l~~~~~~~l-----------------------~~~l 191 (362)
T 3goz_A 159 ----------------------IQ--ILAAIPANVNSLNLRGNNLASKNCAEL-----------------------AKFL 191 (362)
T ss_dssp ----------------------HH--HHHTSCTTCCEEECTTSCGGGSCHHHH-----------------------HHHH
T ss_pred ----------------------HH--HHhcCCccccEeeecCCCCchhhHHHH-----------------------HHHH
Confidence 00 00011 144555554442111110000 0011
Q ss_pred hhc-CCcceeecccccccccccccccCccc---ccCccEEEeecCCccccchhHH----HHcccccEEEEEccccccccc
Q 002939 572 KVL-PNLEELRLSNKKDITKIWQGQFPDHL---LNKLKVLAIENDKSEVLAPDLL----ERFHNLVNLELADGSYKELFS 643 (864)
Q Consensus 572 ~~l-~~L~~L~l~~~~~~~~~~~~~~p~~~---~~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~l~~~~~ 643 (864)
..+ ++|++|++++|. +.......++... .++|++|++++|.+...+...+ ..+++|+.|++++|.+..+..
T Consensus 192 ~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~ 270 (362)
T 3goz_A 192 ASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSK 270 (362)
T ss_dssp HTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCH
T ss_pred HhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCH
Confidence 113 477777777773 3321111122222 2478888888877777655333 356788888888777544322
Q ss_pred c-ccchhhhcccccccceeecCCC
Q 002939 644 N-EGQVEKLVGKLARIKCLQLSGL 666 (864)
Q Consensus 644 ~-~~~l~~~~~~l~~L~~L~l~~~ 666 (864)
. ...++..+..+++|+.|+++++
T Consensus 271 ~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 271 EQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp HHHHHHHTTSTTCCEEEEECTTSC
T ss_pred HHHHHHHHHhccCCceEEEecCCC
Confidence 1 1234445666777777777773
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.56 E-value=9.2e-16 Score=166.27 Aligned_cols=107 Identities=19% Similarity=0.165 Sum_probs=84.6
Q ss_pred CCCceEEEEeccccccCCcccccCCCccEEEecCcccccc------ccccccCcccEEeCCCCCCc----cCchhh----
Q 002939 363 MPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDI------RIIGELKELEILSLQGCDIE----HLPREI---- 428 (864)
Q Consensus 363 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l------~~~~~l~~L~~L~l~~~~i~----~lp~~~---- 428 (864)
-+.|+...+....+..++..+..+++|++|+|++|.+... ..+..+++|++|+|++|.+. .+|..+
T Consensus 8 ~~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~ 87 (386)
T 2ca6_A 8 GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87 (386)
T ss_dssp TCCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH
T ss_pred CcccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHH
Confidence 3455555666667778888999999999999999998864 34778999999999998555 345554
Q ss_pred ---ccccccceecccccccccc----cChhhhhcCcccceeeccccccc
Q 002939 429 ---GQLTQLKLLDLSYCFELKV----IAPNVLSNLSQLEELYMATCCIK 470 (864)
Q Consensus 429 ---~~l~~L~~L~l~~~~~l~~----~~~~~l~~l~~L~~L~l~~~~~~ 470 (864)
..+++|++|++++|. +.. ..+..+.++++|++|++++|.+.
T Consensus 88 ~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp HHHTTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHHhhCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 688999999999997 655 22345788999999999999874
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=1.7e-14 Score=142.08 Aligned_cols=148 Identities=18% Similarity=0.304 Sum_probs=129.0
Q ss_pred eEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCC-CchhhcCCCCceEEEEeccccccCCc-ccccCCCccEEEecC
Q 002939 319 STISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKI-PDNIFMGMPKLKVLLFIRMRLLSLPS-SIRLLTDLRTLCLDG 396 (864)
Q Consensus 319 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~ 396 (864)
+.+++++|.++.+|..+. +.++.|+++++... .+ +..+|..+++|++|+|++|.++.++. .|.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~~iP~~~~-~~~~~L~L~~N~l~--~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP-QYTAELRLNNNEFT--VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCSEEECCSSCCC--EECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCCC-CCCCEEEcCCCcCC--ccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 478999999999998663 46789999986554 34 45668999999999999999998854 799999999999999
Q ss_pred cccccc--ccccccCcccEEeCCCCCCccC-chhhccccccceecccccccccccChhhhhcCcccceeeccccccc
Q 002939 397 CKLEDI--RIIGELKELEILSLQGCDIEHL-PREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIK 470 (864)
Q Consensus 397 ~~l~~l--~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 470 (864)
|.++.+ ..+..+++|++|++++|+++.+ |..+..+++|++|++++|. ++.+++..+..+++|++|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 999988 3489999999999999999977 6788999999999999997 88887777999999999999999865
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=4.4e-15 Score=153.37 Aligned_cols=185 Identities=20% Similarity=0.232 Sum_probs=139.7
Q ss_pred cceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEecC
Q 002939 317 KCSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDG 396 (864)
Q Consensus 317 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~ 396 (864)
++..+.+..+.+..+.....+++|+.|++.++... .++. +..+++|++|++++|.+..++. +.++++|++|++++
T Consensus 25 ~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~--~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK--SVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCC--CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred HHHHHHhcCCCcccccchhhcCcccEEEccCCCcc--cChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC
Confidence 33344455555555544457789999999886554 3443 5789999999999999998877 99999999999999
Q ss_pred ccccccccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecccccccc--ccc
Q 002939 397 CKLEDIRIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW--EIS 474 (864)
Q Consensus 397 ~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~ 474 (864)
|.++.++.+..+++|++|++++|+++.++ .+..+++|++|++++|. ++.++ .+.++++|++|++++|.+.. .+.
T Consensus 100 n~l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~L~~N~l~~~~~l~ 175 (291)
T 1h6t_A 100 NKVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT--VLSRLTKLDTLSLEDNQISDIVPLA 175 (291)
T ss_dssp SCCCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG--GGGGCTTCSEEECCSSCCCCCGGGT
T ss_pred CcCCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcch--hhccCCCCCEEEccCCccccchhhc
Confidence 99999988999999999999999999875 68899999999999996 77773 38899999999999987653 244
Q ss_pred cCCcchhhhcCCCCccCCCCccCcccceecccccccccccccccccccCCCcceEEEeeCC
Q 002939 475 NCSLLEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCD 535 (864)
Q Consensus 475 ~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 535 (864)
.++ +|+.|+++++ .+..++. ...+++|+.|++++++
T Consensus 176 ~l~---------------------~L~~L~L~~N-~i~~l~~---l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 176 GLT---------------------KLQNLYLSKN-HISDLRA---LAGLKNLDVLELFSQE 211 (291)
T ss_dssp TCT---------------------TCCEEECCSS-CCCBCGG---GTTCTTCSEEEEEEEE
T ss_pred CCC---------------------ccCEEECCCC-cCCCChh---hccCCCCCEEECcCCc
Confidence 444 4455555443 2222221 3446677777777654
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=3.3e-15 Score=151.70 Aligned_cols=144 Identities=23% Similarity=0.236 Sum_probs=67.0
Q ss_pred hccceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEe
Q 002939 315 LKKCSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCL 394 (864)
Q Consensus 315 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L 394 (864)
+.+++.|++++|.++.++....+++|+.|+++++... .++. |..+++|++|++++|.+..+|.... ++|++|++
T Consensus 40 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~--~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L 113 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS--DLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFL 113 (263)
T ss_dssp HTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC--CCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEEC
T ss_pred cCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccC--CChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEEc
Confidence 4445555555555554443234445555555443322 2222 3445555555555555544443222 44555555
Q ss_pred cCccccccccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeeccccc
Q 002939 395 DGCKLEDIRIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCC 468 (864)
Q Consensus 395 ~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 468 (864)
++|.++.++.+..+++|++|++++|+++.+| .+..+++|++|++++|. +..+ ..+..+++|+.|++++|.
T Consensus 114 ~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 114 DNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBC--TTSTTCCCCCEEEEEEEE
T ss_pred cCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-Ccch--HHhccCCCCCEEeCCCCc
Confidence 5555544444445555555555555544443 34445555555555543 4333 124444455555544444
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=4.2e-14 Score=150.56 Aligned_cols=215 Identities=17% Similarity=0.136 Sum_probs=167.9
Q ss_pred hhhccceEEEeecCCccCCCCCC--cCCCceEEEecCCCCCCCCCCchhhcCCCCceE-EEEeccccccC-CcccccCCC
Q 002939 313 YLLKKCSTISLHGNNISEIPQGW--ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKV-LLFIRMRLLSL-PSSIRLLTD 388 (864)
Q Consensus 313 ~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~-L~L~~~~i~~l-p~~~~~l~~ 388 (864)
+.+.++++|++++|.++.+|+.. .+++|+.|++++|... ..++..+|.++++++. +.+.+|.+..+ |..|.++++
T Consensus 27 ~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~-~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~ 105 (350)
T 4ay9_X 27 DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL-EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN 105 (350)
T ss_dssp TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC-CEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTT
T ss_pred CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC-CccChhHhhcchhhhhhhcccCCcccccCchhhhhccc
Confidence 45678999999999999998753 7899999999985543 3577788888888765 66777889888 567899999
Q ss_pred ccEEEecCcccccccc--ccccCcccEEeCCCC-CCccCch-hhccc-cccceecccccccccccChhhhhcCcccceee
Q 002939 389 LRTLCLDGCKLEDIRI--IGELKELEILSLQGC-DIEHLPR-EIGQL-TQLKLLDLSYCFELKVIAPNVLSNLSQLEELY 463 (864)
Q Consensus 389 L~~L~L~~~~l~~l~~--~~~l~~L~~L~l~~~-~i~~lp~-~~~~l-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 463 (864)
|++|++++|.++.++. +....++..|++.++ ++..+|. .+..+ ..++.|++++|. ++.+++.. ....+|++|+
T Consensus 106 L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~-f~~~~L~~l~ 183 (350)
T 4ay9_X 106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSA-FNGTQLDELN 183 (350)
T ss_dssp CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTS-STTEEEEEEE
T ss_pred cccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhh-ccccchhHHh
Confidence 9999999999988743 455667888888664 6777764 34555 468899999996 88888774 4567899999
Q ss_pred cccc-cc---cc-ccccCCcchhhhcCCCCccCCCCccCcccceecccccccccccccccccccCCCcceEEEee
Q 002939 464 MATC-CI---KW-EISNCSLLEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSC 533 (864)
Q Consensus 464 l~~~-~~---~~-~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 533 (864)
+.++ .+ +. .+..+++|+.|+++.+.++..+...|.+|+.|...++..++.++. ...+++|+.+++.+
T Consensus 184 l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp CTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred hccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 8754 33 22 468889999999999999998888899999999888888877764 45577888887653
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=2.5e-14 Score=149.65 Aligned_cols=191 Identities=15% Similarity=0.087 Sum_probs=150.3
Q ss_pred hccceEEEeecCCccC-CCCC---CcCCCceEEEecCCCCCCCC--CCchhhcCCCCceEEEEeccccccCC-cccccCC
Q 002939 315 LKKCSTISLHGNNISE-IPQG---WECPQLEFFYIFAPEDSPLK--IPDNIFMGMPKLKVLLFIRMRLLSLP-SSIRLLT 387 (864)
Q Consensus 315 ~~~l~~L~l~~~~~~~-~~~~---~~~~~L~~L~l~~~~~~~~~--~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~ 387 (864)
..++++|++++|.+.. .|.. ..+++|++|+++++...... ++...+..+++|++|++++|.+..++ ..+++++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4569999999999884 4444 45889999999986655311 11233457999999999999999774 6789999
Q ss_pred CccEEEecCccccc---c---ccccccCcccEEeCCCCCCccCchh----hccccccceecccccccccccChhhhhcC-
Q 002939 388 DLRTLCLDGCKLED---I---RIIGELKELEILSLQGCDIEHLPRE----IGQLTQLKLLDLSYCFELKVIAPNVLSNL- 456 (864)
Q Consensus 388 ~L~~L~L~~~~l~~---l---~~~~~l~~L~~L~l~~~~i~~lp~~----~~~l~~L~~L~l~~~~~l~~~~~~~l~~l- 456 (864)
+|++|+|++|++.. + ..++.+++|++|++++|+++.+|.. +..+++|++|++++|. +....|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhcc
Confidence 99999999998765 2 2247899999999999999877653 5788999999999997 776633335666
Q ss_pred --cccceeecccccccc---ccccCCcchhhhcCCCCccCC-CCccCcccceeccccc
Q 002939 457 --SQLEELYMATCCIKW---EISNCSLLEEIVGKEGGVEAD-PSFVFPRLTILQLCYL 508 (864)
Q Consensus 457 --~~L~~L~l~~~~~~~---~~~~~~~L~~L~~~~~~~~~~-~~~~~~~L~~L~l~~~ 508 (864)
++|++|++++|.+.. .+ .++|+.|+++.|.+.+. ....+++|+.|++++.
T Consensus 249 ~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp CCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCSCCCCSCCCTTSCCCCSCEECSST
T ss_pred CcCcCCEEECCCCCCCchhhhh--cCCCCEEECCCCcCCCCchhhhCCCccEEECcCC
Confidence 699999999998763 23 37999999999999883 4557789999998874
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=3.4e-14 Score=137.55 Aligned_cols=127 Identities=19% Similarity=0.269 Sum_probs=77.5
Q ss_pred cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEecCccccc--cccccccCcccE
Q 002939 336 ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLED--IRIIGELKELEI 413 (864)
Q Consensus 336 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~--l~~~~~l~~L~~ 413 (864)
.+++|+.|++.++... .++ . +..+++|++|++++|.+..++ .+..+++|++|++++|.++. +..++.+++|++
T Consensus 42 ~l~~L~~L~l~~n~i~--~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINVT--DLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCCS--CCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCcc--ChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 4556666666654433 334 2 456666666666666555443 46666666666666666665 355666666666
Q ss_pred EeCCCCCCc-cCchhhccccccceecccccccccccChhhhhcCcccceeecccccc
Q 002939 414 LSLQGCDIE-HLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCI 469 (864)
Q Consensus 414 L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 469 (864)
|++++|.++ ..|..+..+++|++|++++|..+..++. +..+++|++|++++|.+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGV 171 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCC
Confidence 666666666 3455666666666666666643555542 56666666666666654
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.51 E-value=7.6e-15 Score=157.25 Aligned_cols=100 Identities=16% Similarity=0.120 Sum_probs=60.8
Q ss_pred EEEeccccccC-CcccccCCCccEEEecCcccccc------ccccccC-cccEEeCCCCCCccC-chhhccc-----ccc
Q 002939 369 LLFIRMRLLSL-PSSIRLLTDLRTLCLDGCKLEDI------RIIGELK-ELEILSLQGCDIEHL-PREIGQL-----TQL 434 (864)
Q Consensus 369 L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~l------~~~~~l~-~L~~L~l~~~~i~~l-p~~~~~l-----~~L 434 (864)
++++.+.+... |..+....+|++|+|++|.++.. ..+..++ +|++|++++|.++.. +..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 45666666643 44444455577777777777654 3356666 777777777777643 4445544 677
Q ss_pred ceecccccccccccChhhhhc----C-cccceeecccccc
Q 002939 435 KLLDLSYCFELKVIAPNVLSN----L-SQLEELYMATCCI 469 (864)
Q Consensus 435 ~~L~l~~~~~l~~~~~~~l~~----l-~~L~~L~l~~~~~ 469 (864)
++|++++|. ++..++..+.. + ++|++|++++|.+
T Consensus 83 ~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 121 (362)
T 3goz_A 83 TSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDF 121 (362)
T ss_dssp CEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred cEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcC
Confidence 777777775 55554443333 2 5666666665543
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.51 E-value=1.1e-13 Score=140.49 Aligned_cols=175 Identities=19% Similarity=0.159 Sum_probs=149.9
Q ss_pred hhccceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEE
Q 002939 314 LLKKCSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLC 393 (864)
Q Consensus 314 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~ 393 (864)
.+.++..+.++.+.++.++....+++|+.|++.++... .++ .+..+++|++|++++|.+..+|. +.++++|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~--~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ--SLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC--CCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcc--cch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 45667778888888888885558899999999986554 455 36889999999999999999987 99999999999
Q ss_pred ecCccccccccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecccccccc--
Q 002939 394 LDGCKLEDIRIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW-- 471 (864)
Q Consensus 394 L~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-- 471 (864)
+++|.++.++.+.. ++|++|++++|+++.++ .+..+++|++|++++|. ++.++. +..+++|++|++++|.+..
T Consensus 92 L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~~~ 166 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITNTG 166 (263)
T ss_dssp CCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCBCT
T ss_pred CCCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcchH
Confidence 99999999877666 99999999999999887 58999999999999997 888853 8999999999999998765
Q ss_pred ccccCCcchhhhcCCCCccCCCCccCc
Q 002939 472 EISNCSLLEEIVGKEGGVEADPSFVFP 498 (864)
Q Consensus 472 ~~~~~~~L~~L~~~~~~~~~~~~~~~~ 498 (864)
.+..+++|+.|+++++.+...+...++
T Consensus 167 ~l~~l~~L~~L~l~~N~~~~~~~~~~~ 193 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCVNEPVKYQP 193 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEECCCEECCS
T ss_pred HhccCCCCCEEeCCCCcccCCcccccc
Confidence 578889999999999887766544443
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.50 E-value=1.3e-14 Score=164.30 Aligned_cols=185 Identities=19% Similarity=0.236 Sum_probs=148.5
Q ss_pred hccceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEe
Q 002939 315 LKKCSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCL 394 (864)
Q Consensus 315 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L 394 (864)
+..+..+.+..+.+..+.....+++|+.|++..+... .++. |..+++|+.|+|++|.+..+|. +..+++|++|+|
T Consensus 20 l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~--~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~L 94 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK--SVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCC--CCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEEC
T ss_pred HHHHHHHhccCCCcccccchhcCCCCCEEECcCCCCC--CChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEEC
Confidence 3445555666666666666557889999999876554 3442 6889999999999999998876 999999999999
Q ss_pred cCccccccccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecccccccc--c
Q 002939 395 DGCKLEDIRIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW--E 472 (864)
Q Consensus 395 ~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~--~ 472 (864)
++|.++.++.+..+++|++|+|++|.+..++ .+..+++|+.|+|++|. +..++ .+..+++|+.|+|++|.+.. .
T Consensus 95 s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~--~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 95 DENKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT--VLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp CSSCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCG--GGGSCTTCSEEECCSSCCCCCGG
T ss_pred cCCCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCch--hhcccCCCCEEECcCCcCCCchh
Confidence 9999999999999999999999999999876 58899999999999997 77773 38999999999999998753 3
Q ss_pred cccCCcchhhhcCCCCccCCC-CccCcccceeccccc
Q 002939 473 ISNCSLLEEIVGKEGGVEADP-SFVFPRLTILQLCYL 508 (864)
Q Consensus 473 ~~~~~~L~~L~~~~~~~~~~~-~~~~~~L~~L~l~~~ 508 (864)
+..+++|+.|+++.+.+...+ ...+++|+.|+++++
T Consensus 171 l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 207 (605)
T ss_dssp GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSE
T ss_pred hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCC
Confidence 677777888877777666542 234566667766664
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.50 E-value=6e-14 Score=156.97 Aligned_cols=92 Identities=22% Similarity=0.244 Sum_probs=47.8
Q ss_pred CceEEEEeccccccCCcccccCCCccEEEecCccccccccccccCcccEEeCCCCCCccCchhhccccccceeccccccc
Q 002939 365 KLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDIRIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFE 444 (864)
Q Consensus 365 ~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~ 444 (864)
+|++|++++|.+..+|..+ +++|++|+|++|.++.++ ..+++|++|++++|+++.+|. +.. +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~- 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ- 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC-
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc-
Confidence 5555555555555555443 245555555555555544 344555555555555555554 333 55555555554
Q ss_pred ccccChhhhhcCcccceeeccccc
Q 002939 445 LKVIAPNVLSNLSQLEELYMATCC 468 (864)
Q Consensus 445 l~~~~~~~l~~l~~L~~L~l~~~~ 468 (864)
++.+|. .+++|+.|++++|.
T Consensus 132 l~~lp~----~l~~L~~L~Ls~N~ 151 (571)
T 3cvr_A 132 LTMLPE----LPALLEYINADNNQ 151 (571)
T ss_dssp CSCCCC----CCTTCCEEECCSSC
T ss_pred CCCCCC----cCccccEEeCCCCc
Confidence 444443 34555555555444
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=7.8e-14 Score=149.10 Aligned_cols=146 Identities=18% Similarity=0.239 Sum_probs=70.3
Q ss_pred EEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhc-CCCCceEEEEeccccccCC-cccccCCCccEEEecCc
Q 002939 320 TISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFM-GMPKLKVLLFIRMRLLSLP-SSIRLLTDLRTLCLDGC 397 (864)
Q Consensus 320 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~ 397 (864)
.++++++.++.+|..+. +.++.|++++|... .++...|. ++++|++|+|++|.+..++ ..|.++++|++|+|++|
T Consensus 22 ~l~c~~~~l~~iP~~~~-~~l~~L~Ls~N~l~--~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP-SYTALLDLSHNNLS--RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSSCCSSCC-TTCSEEECCSSCCC--EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCccCccCC-CCCCEEECCCCCCC--ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 44555555555554332 23455555543222 33444444 4555555555555555443 23555555555555555
Q ss_pred ccccc--ccccccCcccEEeCCCCCCccC-chhhccccccceecccccccccccChhhh---hcCcccceeecccccc
Q 002939 398 KLEDI--RIIGELKELEILSLQGCDIEHL-PREIGQLTQLKLLDLSYCFELKVIAPNVL---SNLSQLEELYMATCCI 469 (864)
Q Consensus 398 ~l~~l--~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~l---~~l~~L~~L~l~~~~~ 469 (864)
.++.+ ..+..+++|++|+|++|+++.+ |..+..+++|++|++++|. +..+|...+ ..+++|++|++++|.+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 55544 2245555555555555555533 3445555555555555553 444544433 3455555555555544
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.47 E-value=1.3e-13 Score=147.46 Aligned_cols=155 Identities=24% Similarity=0.316 Sum_probs=133.3
Q ss_pred hhhccceEEEeecCCccCCCCCC---cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCc-ccccCCC
Q 002939 313 YLLKKCSTISLHGNNISEIPQGW---ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPS-SIRLLTD 388 (864)
Q Consensus 313 ~~~~~l~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~ 388 (864)
..+..++.|++++|.++.++... .+++|+.|++..|... .++...|.++++|++|+|++|.+..+|. .|.++++
T Consensus 36 ~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~--~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 113 (361)
T 2xot_A 36 SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN--FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA 113 (361)
T ss_dssp SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC--ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcC
Confidence 45567999999999999887754 7899999999986544 5777778999999999999999998854 6899999
Q ss_pred ccEEEecCcccccc--ccccccCcccEEeCCCCCCccCchhh----ccccccceecccccccccccChhhhhcCcc--cc
Q 002939 389 LRTLCLDGCKLEDI--RIIGELKELEILSLQGCDIEHLPREI----GQLTQLKLLDLSYCFELKVIAPNVLSNLSQ--LE 460 (864)
Q Consensus 389 L~~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~i~~lp~~~----~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~--L~ 460 (864)
|++|+|++|.++.+ ..+..+++|++|+|++|+++.+|..+ ..+++|++|++++|. +..++...+..++. |+
T Consensus 114 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~ 192 (361)
T 2xot_A 114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKN 192 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHT
T ss_pred CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcc
Confidence 99999999999987 46999999999999999999998765 579999999999996 88998888888887 48
Q ss_pred eeeccccccc
Q 002939 461 ELYMATCCIK 470 (864)
Q Consensus 461 ~L~l~~~~~~ 470 (864)
.|++++|.+.
T Consensus 193 ~l~l~~N~~~ 202 (361)
T 2xot_A 193 GLYLHNNPLE 202 (361)
T ss_dssp TEECCSSCEE
T ss_pred eEEecCCCcc
Confidence 8999998764
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=5.2e-13 Score=149.37 Aligned_cols=193 Identities=18% Similarity=0.156 Sum_probs=143.9
Q ss_pred ccceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEec
Q 002939 316 KKCSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLD 395 (864)
Q Consensus 316 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~ 395 (864)
.+++.|++++|.++.+|..+. ++|+.|++++|... .+| ..+++|++|++++|.++.+|. +.+ +|++|+|+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~-~~L~~L~Ls~N~l~--~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP-PQITVLEITQNALI--SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC-TTCSEEECCSSCCS--CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCccCHhHc-CCCCEEECcCCCCc--ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 479999999999999988764 88999999986655 566 347899999999999999988 665 99999999
Q ss_pred CccccccccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecccccccccccc
Q 002939 396 GCKLEDIRIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKWEISN 475 (864)
Q Consensus 396 ~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 475 (864)
+|.++.++. .+++|++|++++|.++.+|. .+++|++|++++|. ++.+|. +. ++|+.|++++|.+.. +..
T Consensus 129 ~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~~-lp~ 197 (571)
T 3cvr_A 129 NNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLES-LPA 197 (571)
T ss_dssp SSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCSS-CCC
T ss_pred CCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCCc-hhh
Confidence 999998876 78999999999999999886 67899999999996 888876 54 899999999887652 111
Q ss_pred CC-cchhhhcCCCCccCCCCccCcccceecccccccccccccccccccCCCcceEEEeeCCCcccccccccc
Q 002939 476 CS-LLEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYS 546 (864)
Q Consensus 476 ~~-~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 546 (864)
.. +| ....+.|+.|+++++ .+..++.. ...+++|+.|++++|+.-...|..+..
T Consensus 198 ~~~~L--------------~~~~~~L~~L~Ls~N-~l~~lp~~--l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 198 VPVRN--------------HHSEETEIFFRCREN-RITHIPEN--ILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC----------------------CCEEEECCSS-CCCCCCGG--GGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred HHHhh--------------hcccccceEEecCCC-cceecCHH--HhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 00 11 001123377777663 44444432 334788888888887766655554433
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=3e-13 Score=132.25 Aligned_cols=149 Identities=21% Similarity=0.279 Sum_probs=127.7
Q ss_pred hhhccceEEEeecCCccCCCCCC--cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcc-cccCCCc
Q 002939 313 YLLKKCSTISLHGNNISEIPQGW--ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSS-IRLLTDL 389 (864)
Q Consensus 313 ~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-~~~l~~L 389 (864)
..++++++|++++|.++.++... .+++|+.|++.++... .++...|..+++|++|++++|.+..+|.. +.++++|
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ--SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL 102 (208)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC--ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC
Confidence 34568999999999999888754 7899999999986554 67888889999999999999999988654 7999999
Q ss_pred cEEEecCccccccc--cccccCcccEEeCCCCCCccCchh-hccccccceecccccccccccChhhhhcCcccceeeccc
Q 002939 390 RTLCLDGCKLEDIR--IIGELKELEILSLQGCDIEHLPRE-IGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMAT 466 (864)
Q Consensus 390 ~~L~L~~~~l~~l~--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 466 (864)
++|++++|.++.++ .+..+++|++|++++|.++.+|.. +..+++|++|++++|. + ...+++|+.|+++.
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-~-------~~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP-W-------DCTCPGIRYLSEWI 174 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC-B-------CCCTTTTHHHHHHH
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC-e-------ecCCCCHHHHHHHH
Confidence 99999999999883 389999999999999999988765 7889999999999996 2 23567889999888
Q ss_pred ccccc
Q 002939 467 CCIKW 471 (864)
Q Consensus 467 ~~~~~ 471 (864)
|.+.+
T Consensus 175 n~~~g 179 (208)
T 2o6s_A 175 NKHSG 179 (208)
T ss_dssp HHCTT
T ss_pred HhCCc
Confidence 87654
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=5.1e-13 Score=125.61 Aligned_cols=125 Identities=26% Similarity=0.288 Sum_probs=66.5
Q ss_pred hccceEEEeecCCcc--CCCCCC-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEecccccc-CCcccccCCCcc
Q 002939 315 LKKCSTISLHGNNIS--EIPQGW-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLS-LPSSIRLLTDLR 390 (864)
Q Consensus 315 ~~~l~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~~~~l~~L~ 390 (864)
+++++.|++++|.+. .+|..+ .+++|+.|++.++.... + ..|..+++|++|++++|.+.. +|..+.++++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~--~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--V--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC--C--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC--h--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 356777777777665 555543 45555555555543332 1 234455555555555555554 444444455555
Q ss_pred EEEecCcccccc---ccccccCcccEEeCCCCCCccCch----hhccccccceecccccc
Q 002939 391 TLCLDGCKLEDI---RIIGELKELEILSLQGCDIEHLPR----EIGQLTQLKLLDLSYCF 443 (864)
Q Consensus 391 ~L~L~~~~l~~l---~~~~~l~~L~~L~l~~~~i~~lp~----~~~~l~~L~~L~l~~~~ 443 (864)
+|++++|.++.+ ..+..+++|++|++++|.++.+|. .+..+++|++|++++|.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 555555555543 234555555555555555554443 44555555555555553
No 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.41 E-value=5.7e-13 Score=131.15 Aligned_cols=141 Identities=17% Similarity=0.244 Sum_probs=111.3
Q ss_pred eEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCc-ccccCCCccEEEecCcccccc--ccccccCcccEEeCC
Q 002939 341 EFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPS-SIRLLTDLRTLCLDGCKLEDI--RIIGELKELEILSLQ 417 (864)
Q Consensus 341 ~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~l--~~~~~l~~L~~L~l~ 417 (864)
+.+++.++. ...+|..+ .++|+.|++++|.+..+|. .|..+++|++|+|++|.++.+ ..+.++++|++|+|+
T Consensus 14 ~~v~c~~~~--l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKG--LTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSC--CSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCC--cCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 455665533 33567655 3789999999999998865 789999999999999999987 569999999999999
Q ss_pred CCCCccCchh-hccccccceecccccccccccChhhhhcCcccceeecccccccc----ccccCCcchhhhcCCC
Q 002939 418 GCDIEHLPRE-IGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW----EISNCSLLEEIVGKEG 487 (864)
Q Consensus 418 ~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~L~~L~~~~~ 487 (864)
+|+++.+|.. +..+++|++|++++|. +..+++..+..+++|++|++++|.+.. .+..+++|+.|++++|
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 9999988765 5789999999999996 888888889999999999999988653 2344444444444444
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.41 E-value=5.4e-13 Score=125.45 Aligned_cols=129 Identities=22% Similarity=0.245 Sum_probs=96.1
Q ss_pred CCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEecCccccc-ccc-ccccCcccEEe
Q 002939 338 PQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLED-IRI-IGELKELEILS 415 (864)
Q Consensus 338 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~-l~~-~~~l~~L~~L~ 415 (864)
++|+.|++.++......+|.. |..+++|++|++++|.+..+ ..+..+++|++|++++|.++. ++. +.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 678888888755443355544 46788888888888888777 667888888888888888877 443 45588888888
Q ss_pred CCCCCCccCc--hhhccccccceecccccccccccCh---hhhhcCcccceeecccccc
Q 002939 416 LQGCDIEHLP--REIGQLTQLKLLDLSYCFELKVIAP---NVLSNLSQLEELYMATCCI 469 (864)
Q Consensus 416 l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~~~~---~~l~~l~~L~~L~l~~~~~ 469 (864)
+++|.++.+| ..+..+++|++|++++|. +..+++ ..+..+++|++|++++|.+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 8888888765 677788888888888886 677665 4577788888888777654
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=6.2e-13 Score=122.18 Aligned_cols=103 Identities=27% Similarity=0.355 Sum_probs=64.7
Q ss_pred cCCCCceEEEEeccccccCCcccccCCCccEEEecCccccc-cc-cccccCcccEEeCCCCCCccCc--hhhccccccce
Q 002939 361 MGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLED-IR-IIGELKELEILSLQGCDIEHLP--REIGQLTQLKL 436 (864)
Q Consensus 361 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~-l~-~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~ 436 (864)
..+++|++|++++|.+..+ ..++++++|++|++++|.++. ++ .+..+++|++|++++|.++.+| ..+..+++|++
T Consensus 39 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred hhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence 5566666666666666655 456666666666666666665 33 3445666666666666666543 55666677777
Q ss_pred ecccccccccccCh---hhhhcCcccceeecc
Q 002939 437 LDLSYCFELKVIAP---NVLSNLSQLEELYMA 465 (864)
Q Consensus 437 L~l~~~~~l~~~~~---~~l~~l~~L~~L~l~ 465 (864)
|++++|. +..+++ ..+..+++|+.|+++
T Consensus 118 L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 118 LDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 7777764 555554 446666677766653
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.39 E-value=1e-12 Score=129.26 Aligned_cols=142 Identities=17% Similarity=0.131 Sum_probs=110.8
Q ss_pred eEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCC--cccccCCCccEEEecCccccccc--cccccCcccEEeC
Q 002939 341 EFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLP--SSIRLLTDLRTLCLDGCKLEDIR--IIGELKELEILSL 416 (864)
Q Consensus 341 ~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp--~~~~~l~~L~~L~L~~~~l~~l~--~~~~l~~L~~L~l 416 (864)
+.++++++.. ..+|..+ .+.+++|++++|.++.++ ..|.++++|++|+|++|.++.++ .+.++++|++|++
T Consensus 14 ~~l~~s~n~l--~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKL--NKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCC--SSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCc--ccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 4677766433 3577654 456789999999999873 34889999999999999999883 5899999999999
Q ss_pred CCCCCccCch-hhccccccceecccccccccccChhhhhcCcccceeecccccccc----ccccCCcchhhhcCCCC
Q 002939 417 QGCDIEHLPR-EIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW----EISNCSLLEEIVGKEGG 488 (864)
Q Consensus 417 ~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~L~~L~~~~~~ 488 (864)
++|.++.+|. .+..+++|++|++++|. +..+++..+..+++|++|++++|.+.. .+..+++|+.|++++|.
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 9999997754 48899999999999996 888877778999999999999987643 34445555555554443
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=6.1e-13 Score=126.04 Aligned_cols=130 Identities=16% Similarity=0.121 Sum_probs=91.4
Q ss_pred CcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEecCccccccc-c-ccccCccc
Q 002939 335 WECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDIR-I-IGELKELE 412 (864)
Q Consensus 335 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l~-~-~~~l~~L~ 412 (864)
..+.+|+.|++.++... .++ .+....++|++|++++|.+..+ ..+..+++|++|++++|.++.++ . +..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~--~i~-~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP--VIE-NLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCC--SCC-CGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCc--hhH-HhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 35566666666665443 233 2333344788888888887776 56777888888888888877763 3 47788888
Q ss_pred EEeCCCCCCccCch--hhccccccceecccccccccccChh---hhhcCcccceeecccccc
Q 002939 413 ILSLQGCDIEHLPR--EIGQLTQLKLLDLSYCFELKVIAPN---VLSNLSQLEELYMATCCI 469 (864)
Q Consensus 413 ~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~~~~~---~l~~l~~L~~L~l~~~~~ 469 (864)
+|++++|.+..+|. .+..+++|++|++++|. +..+|.. .+..+++|+.|++++|..
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 88888888877776 67778888888888886 6666553 467788888888777654
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=1.4e-12 Score=119.81 Aligned_cols=123 Identities=24% Similarity=0.274 Sum_probs=108.7
Q ss_pred hccceEEEeecCCcc--CCCCCC-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEecccccc-CCcccccCCCcc
Q 002939 315 LKKCSTISLHGNNIS--EIPQGW-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLS-LPSSIRLLTDLR 390 (864)
Q Consensus 315 ~~~l~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~~~~l~~L~ 390 (864)
+++++.|++++|.+. .+|..+ .+++|+.|++.++.... + ..|..+++|++|++++|.+.. +|..+..+++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--I--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC--C--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC--c--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 468999999999998 888875 88999999999866554 3 457899999999999999997 788888899999
Q ss_pred EEEecCcccccc---ccccccCcccEEeCCCCCCccCch----hhccccccceecccc
Q 002939 391 TLCLDGCKLEDI---RIIGELKELEILSLQGCDIEHLPR----EIGQLTQLKLLDLSY 441 (864)
Q Consensus 391 ~L~L~~~~l~~l---~~~~~l~~L~~L~l~~~~i~~lp~----~~~~l~~L~~L~l~~ 441 (864)
+|++++|.++.+ ..++.+++|++|++++|.++.+|. .+..+++|++|++++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999986 668999999999999999998875 688999999999864
No 125
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.35 E-value=1e-11 Score=132.52 Aligned_cols=196 Identities=12% Similarity=0.112 Sum_probs=121.4
Q ss_pred hHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC------ChHHHHHHHHHHhCCccc
Q 002939 3 TLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP------DIGKIQGELADQLGMKFS 76 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~------~~~~~~~~i~~~l~~~~~ 76 (864)
++++|.+++.+. +++.|+|++|+|||||+++++++. + ++|+++.... +...+...+.+.+.....
T Consensus 20 el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 90 (350)
T 2qen_A 20 ESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIKELQSTISPFQK 90 (350)
T ss_dssp HHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHHHHHHHHHHHHh
Confidence 567777777653 799999999999999999999774 1 7888876543 566777777776643100
Q ss_pred cchhh------hhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchhc---------cccccCCCCCCCCCcEEE
Q 002939 77 QGEIA------DQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDLD---------LEKVGVPSGNDWRGCKVL 141 (864)
Q Consensus 77 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~---------~~~l~~~~~~~~~gs~Ii 141 (864)
..... ....... ......+..+.+.+.....++++||+||++...+ +..+.... ....+.++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~i 168 (350)
T 2qen_A 91 FQSKFKISLNLKFLTLEP-RKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY-DSLPNLKII 168 (350)
T ss_dssp HHHHHTCCCCCGGGTSCG-GGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH-HHCTTEEEE
T ss_pred HhhhceeEEEecceeecc-ccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH-HhcCCeEEE
Confidence 00000 0000000 0123334444444444322489999999976543 12121111 111367899
Q ss_pred EEeCChHHHhh-----------cC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHHHH
Q 002939 142 LTARDRHVLGS-----------IG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTLAK 208 (864)
Q Consensus 142 vTtR~~~v~~~-----------~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~~~ 208 (864)
+|++....... .+ ...+++.+|+.+|+.+++...+...... ...+.+.++++.++|+|.++..++.
T Consensus 169 l~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-~~~~~~~~i~~~tgG~P~~l~~~~~ 247 (350)
T 2qen_A 169 LTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-VPENEIEEAVELLDGIPGWLVVFGV 247 (350)
T ss_dssp EEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99987653221 11 3478999999999999998865221111 1245677899999999999998886
Q ss_pred Hh
Q 002939 209 AL 210 (864)
Q Consensus 209 ~l 210 (864)
.+
T Consensus 248 ~~ 249 (350)
T 2qen_A 248 EY 249 (350)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 126
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.35 E-value=3.2e-12 Score=126.69 Aligned_cols=129 Identities=24% Similarity=0.320 Sum_probs=114.5
Q ss_pred hhhccceEEEeecCCccCCCCC-C-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcc-cccCCCc
Q 002939 313 YLLKKCSTISLHGNNISEIPQG-W-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSS-IRLLTDL 389 (864)
Q Consensus 313 ~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-~~~l~~L 389 (864)
..+.+++.|++++|.++.+++. + .+++|+.|++.++.. ..++...|..+++|++|+|++|.++.+|.. |..+++|
T Consensus 37 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l--~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 114 (229)
T 3e6j_A 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL 114 (229)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC--CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhh
Confidence 4557999999999999988554 3 889999999998665 467888889999999999999999988654 7899999
Q ss_pred cEEEecCcccccc-ccccccCcccEEeCCCCCCccCch-hhccccccceecccccc
Q 002939 390 RTLCLDGCKLEDI-RIIGELKELEILSLQGCDIEHLPR-EIGQLTQLKLLDLSYCF 443 (864)
Q Consensus 390 ~~L~L~~~~l~~l-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~ 443 (864)
++|+|++|.++.+ ..+..+++|++|++++|+++.+|. .+..+++|++|++++|.
T Consensus 115 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 115 KELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 9999999999988 568999999999999999998874 58889999999999997
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=5.6e-13 Score=155.22 Aligned_cols=187 Identities=18% Similarity=0.214 Sum_probs=111.1
Q ss_pred ccceEEEeecCCccCCCCCC-cCCCceEEEecCCC--CCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEE
Q 002939 316 KKCSTISLHGNNISEIPQGW-ECPQLEFFYIFAPE--DSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTL 392 (864)
Q Consensus 316 ~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~--~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L 392 (864)
.++++|.+.+|.+...+... ....|+.+.+.... .....++...|..++.|++|+|++|.+..+|..+.++++|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 46788889888887766544 33444444433311 1112356677889999999999999999999999999999999
Q ss_pred EecCcccccc-ccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecccccccc
Q 002939 393 CLDGCKLEDI-RIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW 471 (864)
Q Consensus 393 ~L~~~~l~~l-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 471 (864)
+|++|.++.+ ..++++++|++|+|++|.++.+|..++.|++|++|+|++|. ++.+|.. |+++++|++|+|++|.+..
T Consensus 253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSCCCS
T ss_pred EeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCccCC
Confidence 9999999988 56999999999999999999999999999999999999996 8888876 9999999999999998764
Q ss_pred c----cccCCc-chhhhcCCCCccCCCCccCcccceecccc
Q 002939 472 E----ISNCSL-LEEIVGKEGGVEADPSFVFPRLTILQLCY 507 (864)
Q Consensus 472 ~----~~~~~~-L~~L~~~~~~~~~~~~~~~~~L~~L~l~~ 507 (864)
. +..+.. ...+.++.|.+..... ..++.|+++.
T Consensus 331 ~~p~~~~~~~~~~~~l~l~~N~l~~~~p---~~l~~l~l~~ 368 (727)
T 4b8c_D 331 QFLKILTEKSVTGLIFYLRDNRPEIPLP---HERRFIEINT 368 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCCCC---CC--------
T ss_pred CChHHHhhcchhhhHHhhccCcccCcCc---cccceeEeec
Confidence 2 222211 1234566666554332 2445555544
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.34 E-value=3.9e-12 Score=122.12 Aligned_cols=106 Identities=18% Similarity=0.273 Sum_probs=83.5
Q ss_pred CCceEEEEeccccccCCcccccCCCccEEEecCcccccc--ccccccCcccEEeCCCCCCccCc-hhhccccccceeccc
Q 002939 364 PKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDI--RIIGELKELEILSLQGCDIEHLP-REIGQLTQLKLLDLS 440 (864)
Q Consensus 364 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~ 440 (864)
++|++|++++|.++.+|..|.++++|++|+|++|.++.+ ..|.++++|++|++++|+++.+| ..+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 467778888888888887788888888888888888777 34788888888888888888665 357788888888888
Q ss_pred ccccccccChhhhhcCcccceeeccccccc
Q 002939 441 YCFELKVIAPNVLSNLSQLEELYMATCCIK 470 (864)
Q Consensus 441 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 470 (864)
+|. ++.+++..+..+++|+.|++++|.+.
T Consensus 111 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 886 77787777788888888888887654
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=1.8e-12 Score=122.73 Aligned_cols=109 Identities=13% Similarity=0.152 Sum_probs=96.4
Q ss_pred hcCCCCceEEEEeccccccCCcccccCC-CccEEEecCccccccccccccCcccEEeCCCCCCccCchhh-cccccccee
Q 002939 360 FMGMPKLKVLLFIRMRLLSLPSSIRLLT-DLRTLCLDGCKLEDIRIIGELKELEILSLQGCDIEHLPREI-GQLTQLKLL 437 (864)
Q Consensus 360 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~-~L~~L~L~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L 437 (864)
|..+.+|++|++++|.+..+|. +..+. +|++|++++|.++.++.++.+++|++|++++|.++.+|..+ ..+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4678999999999999999876 55555 99999999999999988999999999999999999888655 899999999
Q ss_pred cccccccccccCh-hhhhcCcccceeeccccccc
Q 002939 438 DLSYCFELKVIAP-NVLSNLSQLEELYMATCCIK 470 (864)
Q Consensus 438 ~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~ 470 (864)
++++|. ++.+|. ..+..+++|++|++++|.+.
T Consensus 94 ~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 94 ILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp ECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred ECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 999997 787765 35889999999999999864
No 130
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.33 E-value=1.8e-11 Score=131.18 Aligned_cols=196 Identities=13% Similarity=0.192 Sum_probs=115.7
Q ss_pred chHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC-----CChHHHHHHHHHHhCCc--
Q 002939 2 STLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET-----PDIGKIQGELADQLGMK-- 74 (864)
Q Consensus 2 ~~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-----~~~~~~~~~i~~~l~~~-- 74 (864)
.++++|.+ +.. +++.|+|++|+|||||++++++.... .++|+++... .+.......+.+.+...
T Consensus 20 ~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 90 (357)
T 2fna_A 20 KEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLELQKEINKLVK 90 (357)
T ss_dssp HHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhh
Confidence 35677777 665 69999999999999999999987642 2689998753 34555666665554210
Q ss_pred -----------cccchhhhhccccccCCCChhhHHHHHHHHHhc-C-CeEEEEEcCCCchhc-----cccccCCCCCCCC
Q 002939 75 -----------FSQGEIADQRGMKFSQESDVPGRARKLYARLQK-E-NKILVILDNIWEDLD-----LEKVGVPSGNDWR 136 (864)
Q Consensus 75 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~LlvlDdv~~~~~-----~~~l~~~~~~~~~ 136 (864)
...... ...+...............+.+.+.+ . ++++||+||++...+ +..+...+.....
T Consensus 91 ~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~ 169 (357)
T 2fna_A 91 RLPSLLKALKNIQGIVI-MGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK 169 (357)
T ss_dssp HCTTHHHHTTTSTTEEE-CSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT
T ss_pred hhhHHHHHhcccceEEe-cceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHHHHcCC
Confidence 000000 00000000000001123334444432 1 489999999965432 2111111111113
Q ss_pred CcEEEEEeCChHHHhh-----------cC--CceEEcCCCCHHHHHHHHHHhhCCC-CCCCcchHHHHHHHHhcCCcchH
Q 002939 137 GCKVLLTARDRHVLGS-----------IG--SKTFQIDVLNEEEAWTLFKKMTGDC-AEKGELNFVAIDITKECGGLPIA 202 (864)
Q Consensus 137 gs~IivTtR~~~v~~~-----------~~--~~~~~l~~L~~~e~~~l~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pla 202 (864)
+.++|+|+|....... .+ ...+++.+|+.+|+.+++...+... ..... . .++++.++|+|++
T Consensus 170 ~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---~-~~i~~~t~G~P~~ 245 (357)
T 2fna_A 170 RIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD---Y-EVVYEKIGGIPGW 245 (357)
T ss_dssp TEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC---H-HHHHHHHCSCHHH
T ss_pred CeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc---H-HHHHHHhCCCHHH
Confidence 6789999998753221 11 2578999999999999998765210 11111 1 6899999999999
Q ss_pred HHHHHHHhc
Q 002939 203 IVTLAKALR 211 (864)
Q Consensus 203 ~~~~~~~l~ 211 (864)
+..++..+.
T Consensus 246 l~~~~~~~~ 254 (357)
T 2fna_A 246 LTYFGFIYL 254 (357)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 998887654
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=6.6e-13 Score=154.64 Aligned_cols=157 Identities=20% Similarity=0.158 Sum_probs=112.3
Q ss_pred cCCccCCCCCC-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEecCcccccc-
Q 002939 325 GNNISEIPQGW-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDI- 402 (864)
Q Consensus 325 ~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l- 402 (864)
.|.+...+..+ .++.|+.|+++++... .++..+| .+++|++|+|++|.++.+|..|+++++|++|+|++|.++.+
T Consensus 210 ~n~~~~~~~~~~~l~~L~~L~Ls~n~l~--~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp 286 (727)
T 4b8c_D 210 ENRMVMPKDSKYDDQLWHALDLSNLQIF--NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLP 286 (727)
T ss_dssp ------------CCCCCCEEECTTSCCS--CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCC
T ss_pred ccceecChhhhccCCCCcEEECCCCCCC--CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccC
Confidence 33333333333 7789999999886554 6888876 79999999999999999999999999999999999999988
Q ss_pred ccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcc-cceeeccccccccccccCCcchh
Q 002939 403 RIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQ-LEELYMATCCIKWEISNCSLLEE 481 (864)
Q Consensus 403 ~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~L~~ 481 (864)
..++++++|++|+|++|.++.+|..++.+++|++|+|++|. +...++..+..+.. +..+++++|.+...+ ...|+.
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~--p~~l~~ 363 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRPEIPL--PHERRF 363 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCC---
T ss_pred hhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCcccCcC--ccccce
Confidence 56999999999999999999999999999999999999997 77666665655422 234667777765322 234555
Q ss_pred hhcCCC
Q 002939 482 IVGKEG 487 (864)
Q Consensus 482 L~~~~~ 487 (864)
|.++.+
T Consensus 364 l~l~~n 369 (727)
T 4b8c_D 364 IEINTD 369 (727)
T ss_dssp ------
T ss_pred eEeecc
Confidence 555444
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.31 E-value=7.6e-12 Score=120.17 Aligned_cols=122 Identities=23% Similarity=0.358 Sum_probs=68.2
Q ss_pred eEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCc-hhhcCCCCceEEEEeccccccC-CcccccCCCccEEEecC
Q 002939 319 STISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPD-NIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDG 396 (864)
Q Consensus 319 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~ 396 (864)
+.++++++.++.+|..+. .+++.|++.++... .++. .+|..+++|++|+|++|.++.+ |..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELG--RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCC--SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCC--ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 467777777777766542 25666666554332 2332 2345566666666666666554 45555666666666666
Q ss_pred cccccc--ccccccCcccEEeCCCCCCccC-chhhccccccceecccccc
Q 002939 397 CKLEDI--RIIGELKELEILSLQGCDIEHL-PREIGQLTQLKLLDLSYCF 443 (864)
Q Consensus 397 ~~l~~l--~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~ 443 (864)
|.++.+ ..+..+++|++|++++|+++.+ |..+..+++|++|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 655554 2255555555555555555533 4445555555555555554
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=1.9e-11 Score=117.34 Aligned_cols=121 Identities=24% Similarity=0.355 Sum_probs=107.1
Q ss_pred eEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCC-cccccCCCccEEEecCc
Q 002939 319 STISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLP-SSIRLLTDLRTLCLDGC 397 (864)
Q Consensus 319 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~ 397 (864)
+.++++++.++.+|..+. ++++.|++.++... .+| ..|.++++|++|+|++|.++.++ ..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~-~~l~~L~L~~n~i~--~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP-RDVTELYLDGNQFT--LVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCCEEECCSSCCC--SCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCCC-CCCCEEECCCCcCc--hhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 568899999999998764 68999999986655 566 56799999999999999999885 56999999999999999
Q ss_pred ccccc--ccccccCcccEEeCCCCCCccCch-hhccccccceecccccc
Q 002939 398 KLEDI--RIIGELKELEILSLQGCDIEHLPR-EIGQLTQLKLLDLSYCF 443 (864)
Q Consensus 398 ~l~~l--~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~ 443 (864)
.++.+ ..+..+++|++|+|++|.++.+|. .+..+++|++|++++|.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 99998 359999999999999999998876 47889999999999997
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.26 E-value=1.6e-11 Score=117.82 Aligned_cols=124 Identities=22% Similarity=0.200 Sum_probs=107.4
Q ss_pred eEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcc--cccCCCccEEEecCcccccc--ccccccCcccEEeC
Q 002939 341 EFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSS--IRLLTDLRTLCLDGCKLEDI--RIIGELKELEILSL 416 (864)
Q Consensus 341 ~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~--~~~l~~L~~L~L~~~~l~~l--~~~~~l~~L~~L~l 416 (864)
++++++++.. ..+|..++ ++|++|++++|.+..++.. |+++++|++|+|++|.++.+ ..+.++++|++|++
T Consensus 11 ~~l~~s~~~l--~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGL--KEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCC--SSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCc--CcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 6778876444 46777653 3899999999999988764 89999999999999999988 46999999999999
Q ss_pred CCCCCccCch-hhccccccceecccccccccccChhhhhcCcccceeeccccccc
Q 002939 417 QGCDIEHLPR-EIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIK 470 (864)
Q Consensus 417 ~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 470 (864)
++|+++.++. .+..+++|++|++++|. ++.+++..+..+++|++|++++|.+.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9999997754 58899999999999997 88887777999999999999999875
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.25 E-value=5e-13 Score=129.42 Aligned_cols=109 Identities=22% Similarity=0.247 Sum_probs=69.1
Q ss_pred hhcCCCCceEEEEeccccccCCcccccCCCccEEEecCccccccc-cccccCcccEEeCCCCCCccCchhhcccccccee
Q 002939 359 IFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDIR-IIGELKELEILSLQGCDIEHLPREIGQLTQLKLL 437 (864)
Q Consensus 359 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l~-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L 437 (864)
.|..+++|++|++++|.+..+| .+.++++|++|++++|.++.++ .+..+++|++|++++|+++.+| .+..+++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 3456666677777666666666 6666666777777666666653 3445566677777666666665 46666667777
Q ss_pred cccccccccccCh-hhhhcCcccceeeccccccc
Q 002939 438 DLSYCFELKVIAP-NVLSNLSQLEELYMATCCIK 470 (864)
Q Consensus 438 ~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~ 470 (864)
++++|. +..++. ..+..+++|++|++++|.+.
T Consensus 121 ~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 121 YMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred ECCCCc-CCchhHHHHHhcCCCCCEEEecCCccc
Confidence 776665 555433 33566666777776666553
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.22 E-value=6.2e-11 Score=112.27 Aligned_cols=106 Identities=27% Similarity=0.402 Sum_probs=56.9
Q ss_pred CCceEEEEeccccccCCc-ccccCCCccEEEecCccccccc--cccccCcccEEeCCCCCCccCchh-hccccccceecc
Q 002939 364 PKLKVLLFIRMRLLSLPS-SIRLLTDLRTLCLDGCKLEDIR--IIGELKELEILSLQGCDIEHLPRE-IGQLTQLKLLDL 439 (864)
Q Consensus 364 ~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~l~--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l 439 (864)
++|++|++++|.+..+|. .+.++++|++|++++|.++.++ .++.+++|++|++++|+++.+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 344555555555554433 2355555555555555555442 245555555555555555555433 455566666666
Q ss_pred cccccccccChhhhhcCcccceeeccccccc
Q 002939 440 SYCFELKVIAPNVLSNLSQLEELYMATCCIK 470 (864)
Q Consensus 440 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 470 (864)
++|. ++.+++..+..+++|++|++++|.+.
T Consensus 108 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 6664 55555554555666666666666543
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.21 E-value=5.7e-13 Score=128.99 Aligned_cols=141 Identities=18% Similarity=0.208 Sum_probs=114.7
Q ss_pred ceEEEeecC--CccCCCCCC-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEe
Q 002939 318 CSTISLHGN--NISEIPQGW-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCL 394 (864)
Q Consensus 318 l~~L~l~~~--~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L 394 (864)
++...+.+. .++.+|..+ .+++|+.|+++++.... +| .|.++++|++|++++|.+..+|..+..+++|++|++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~--l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--IS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC--CC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc--cc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 444444433 344444444 78899999998865543 56 468899999999999999999998888999999999
Q ss_pred cCccccccccccccCcccEEeCCCCCCccCch--hhccccccceecccccccccccCh----------hhhhcCccccee
Q 002939 395 DGCKLEDIRIIGELKELEILSLQGCDIEHLPR--EIGQLTQLKLLDLSYCFELKVIAP----------NVLSNLSQLEEL 462 (864)
Q Consensus 395 ~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~~~~----------~~l~~l~~L~~L 462 (864)
++|.++.++.+..+++|++|++++|.++.+|. .+..+++|++|++++|. +...++ ..+..+++|+.|
T Consensus 101 ~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred cCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEE
Confidence 99999999889999999999999999998765 78899999999999997 544433 237788999988
Q ss_pred e
Q 002939 463 Y 463 (864)
Q Consensus 463 ~ 463 (864)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 7
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=3.8e-11 Score=135.20 Aligned_cols=104 Identities=21% Similarity=0.213 Sum_probs=73.6
Q ss_pred CceEEEEeccccccCCcccccCCCccEEEecCcccccc-ccccccCcccEEeCCCCCCccCchhhccccccceecccccc
Q 002939 365 KLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDI-RIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCF 443 (864)
Q Consensus 365 ~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~ 443 (864)
.|++|+|++|.++.+|. ++++++|++|+|++|.++.+ ..++++++|++|+|++|.++.+| .++.+++|++|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 46777777777777775 77777777777777777766 45777777777777777777777 67777777777777775
Q ss_pred cccccC-hhhhhcCcccceeecccccccc
Q 002939 444 ELKVIA-PNVLSNLSQLEELYMATCCIKW 471 (864)
Q Consensus 444 ~l~~~~-~~~l~~l~~L~~L~l~~~~~~~ 471 (864)
++.++ +..++.+++|+.|++++|.+..
T Consensus 520 -l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 520 -LQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp -CCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred -CCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 66663 4447777777777777776543
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.19 E-value=4.3e-11 Score=134.76 Aligned_cols=178 Identities=19% Similarity=0.170 Sum_probs=140.5
Q ss_pred hhccceEEEeecCCccCCCCCC-cCCCceEEEecCCC-----------CCCCCCCchhhcCCCCceEEE-EeccccccCC
Q 002939 314 LLKKCSTISLHGNNISEIPQGW-ECPQLEFFYIFAPE-----------DSPLKIPDNIFMGMPKLKVLL-FIRMRLLSLP 380 (864)
Q Consensus 314 ~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~-----------~~~~~~~~~~~~~l~~Lr~L~-L~~~~i~~lp 380 (864)
..+++++|++++|.++.+|..+ .+++|+.|++..+. ......++..+..+++|+.|+ ++.+.+..++
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence 3456778888999888888877 78888888875421 011233445567888898888 5655444332
Q ss_pred c------cccc--CCCccEEEecCccccccccccccCcccEEeCCCCCCccCchhhccccccceecccccccccccChhh
Q 002939 381 S------SIRL--LTDLRTLCLDGCKLEDIRIIGELKELEILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNV 452 (864)
Q Consensus 381 ~------~~~~--l~~L~~L~L~~~~l~~l~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~ 452 (864)
. .+.. ...|++|+|++|.++.++.++.+++|++|++++|.++.+|..++.+++|++|++++|. ++.+| .
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp--~ 503 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD--G 503 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG--G
T ss_pred hhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc--c
Confidence 2 1111 1369999999999999988999999999999999999999999999999999999997 88886 4
Q ss_pred hhcCcccceeecccccc-----ccccccCCcchhhhcCCCCccCCCC
Q 002939 453 LSNLSQLEELYMATCCI-----KWEISNCSLLEEIVGKEGGVEADPS 494 (864)
Q Consensus 453 l~~l~~L~~L~l~~~~~-----~~~~~~~~~L~~L~~~~~~~~~~~~ 494 (864)
++++++|++|++++|.+ +..++.+++|+.|++++|.+.+.+.
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 99999999999999975 4568899999999999998877543
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.19 E-value=3.4e-11 Score=126.90 Aligned_cols=101 Identities=13% Similarity=0.119 Sum_probs=75.3
Q ss_pred ccCccEEEeecCCccccchhHHHHcccccEEEEEccccccccccccchhhhcccccccc-eeecCCCcCccccccccccc
Q 002939 601 LNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIK-CLQLSGLNDLKHLWLWEENS 679 (864)
Q Consensus 601 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~-~L~l~~~~~l~~l~~~~~~~ 679 (864)
+++|+++++.+|.+..++...|..|++|+.+++..| ++.++ +..|.+|++|+ .+.+.+ +++.+ +.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~------~~aF~~~~~L~~~l~l~~--~l~~I-----~~ 290 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIG------QRVFSNCGRLAGTLELPA--SVTAI-----EF 290 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEEC------TTTTTTCTTCCEEEEECT--TCCEE-----CT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceeh------HHHhhCChhccEEEEEcc--cceEE-----ch
Confidence 578888888888888888888888888999888876 65443 34577888888 888877 56666 44
Q ss_pred cccccccCccEEEeecccccccccCC-ccccCCccEEE
Q 002939 680 KLNMIFQNLETLDISFCRNLKNLLPS-SASFRCLTKLS 716 (864)
Q Consensus 680 ~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~ 716 (864)
..+..+++|+.+++.+ +.++.+... +..+++|+.++
T Consensus 291 ~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 291 GAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred hhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 5566788899998877 677777553 45677777765
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=8.2e-11 Score=111.45 Aligned_cols=126 Identities=21% Similarity=0.331 Sum_probs=108.0
Q ss_pred ceEEEeecCCccCCCCCCcCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcc-cccCCCccEEEecC
Q 002939 318 CSTISLHGNNISEIPQGWECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSS-IRLLTDLRTLCLDG 396 (864)
Q Consensus 318 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~ 396 (864)
.+.++++++.++.+|..+. ++|+.|++.++... .++...|..+++|++|++++|.+..+|.. +.++++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~-~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP-SSATRLELESNKLQ--SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC-TTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCCC-CCCcEEEeCCCccc--EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4578899999999987654 79999999986544 57777789999999999999999988654 78999999999999
Q ss_pred ccccccc--cccccCcccEEeCCCCCCccCchh-hccccccceecccccccccc
Q 002939 397 CKLEDIR--IIGELKELEILSLQGCDIEHLPRE-IGQLTQLKLLDLSYCFELKV 447 (864)
Q Consensus 397 ~~l~~l~--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~ 447 (864)
|.++.++ .+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP-WDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-BCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC-eec
Confidence 9999883 378999999999999999988766 4789999999999997 443
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.19 E-value=4.5e-11 Score=125.94 Aligned_cols=287 Identities=11% Similarity=0.033 Sum_probs=156.1
Q ss_pred CCCceEEEEeccccccCCccccc-CCCccEEEecCccccccc-cccccCcccEEeCCCCCCccCchhhcc--------cc
Q 002939 363 MPKLKVLLFIRMRLLSLPSSIRL-LTDLRTLCLDGCKLEDIR-IIGELKELEILSLQGCDIEHLPREIGQ--------LT 432 (864)
Q Consensus 363 l~~Lr~L~L~~~~i~~lp~~~~~-l~~L~~L~L~~~~l~~l~-~~~~l~~L~~L~l~~~~i~~lp~~~~~--------l~ 432 (864)
+++++.|.++++--..-...+.. +++|++|+|++|.+.... .-+.++.++.+.+..+.+. +..|.. ++
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~--~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVP--AYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEEC--TTTTEEEETTEEEECT
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccC--HHHhcccccccccccC
Confidence 56788888887521100112233 788999999999887331 1222333455555555322 223556 89
Q ss_pred ccceecccccccccccChhhhhcCcccceeecccccccc----ccccCCcchhhhcCCCCccCCCCccCcccceeccccc
Q 002939 433 QLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIKW----EISNCSLLEEIVGKEGGVEADPSFVFPRLTILQLCYL 508 (864)
Q Consensus 433 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~ 508 (864)
+|+.|++.. . ++.++...|..+++|+.+++..+.+.. .+.+|.++..+ .....
T Consensus 102 ~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l---------------------~~~~~ 158 (329)
T 3sb4_A 102 TLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFI---------------------PLGSS 158 (329)
T ss_dssp TCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEE---------------------CTTCT
T ss_pred CCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEe---------------------cCcch
Confidence 999999988 3 888888889999999999988775431 22222222222 11110
Q ss_pred ccccccccccccccCCCcceEEEeeCCCcccccccccccccccccCcccccCCCccccccchhhhcCCcceeeccccccc
Q 002939 509 PELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDI 588 (864)
Q Consensus 509 ~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 588 (864)
.. ......+......+|..+.. .+.+.....+
T Consensus 159 ~~---------~~~~~~i~~~~f~~~~~L~~---------------------------------------~i~~~~~~~l 190 (329)
T 3sb4_A 159 DA---------YRFKNRWEHFAFIEGEPLET---------------------------------------TIQVGAMGKL 190 (329)
T ss_dssp HH---------HHTSTTTTTSCEEESCCCEE---------------------------------------EEEECTTCCH
T ss_pred hh---------hhccccccccccccccccce---------------------------------------eEEecCCCcH
Confidence 00 00000011111111211110 1111111110
Q ss_pred ccc-cccccCcccccCccEEEeecCCccccchhHHHHcccccEEEEEccccccccccccchhhhcccccccceeecCCCc
Q 002939 589 TKI-WQGQFPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLN 667 (864)
Q Consensus 589 ~~~-~~~~~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 667 (864)
... +.... ...+++.+.+.+.............+++|+.++++.|.++.++. ..+.+|++|+.+++.+.
T Consensus 191 ~~~~~~~~~---~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~------~aF~~~~~L~~l~l~~n- 260 (329)
T 3sb4_A 191 EDEIMKAGL---QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD------FTFAQKKYLLKIKLPHN- 260 (329)
T ss_dssp HHHHHHTTC---CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT------TTTTTCTTCCEEECCTT-
T ss_pred HHHHhhccc---CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH------hhhhCCCCCCEEECCcc-
Confidence 000 00000 13456666666553333333333458899999999888866543 35778888999988873
Q ss_pred CccccccccccccccccccCcc-EEEeecccccccccC-CccccCCccEEEEecCcCceeeechhhhhhhccccEEE
Q 002939 668 DLKHLWLWEENSKLNMIFQNLE-TLDISFCRNLKNLLP-SSASFRCLTKLSVWCCEQLINLVTSSAAKNLVQLVTMK 742 (864)
Q Consensus 668 ~l~~l~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 742 (864)
++.| +...+..+++|+ .+.+.+ +++.+.. .+..+++|+.+++.. ++++.+. ...+.++++|+.++
T Consensus 261 -i~~I-----~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~-~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 261 -LKTI-----GQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLG-DELFGNGVPSKLIY 327 (329)
T ss_dssp -CCEE-----CTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEEC-TTTTCTTCCCCEEE
T ss_pred -ccee-----hHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccc-hhhhcCCcchhhhc
Confidence 6665 344556677787 888876 5555543 345677777777754 4666663 45666777777765
No 143
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.18 E-value=1.8e-10 Score=125.86 Aligned_cols=194 Identities=16% Similarity=0.120 Sum_probs=124.2
Q ss_pred chHHHHHHHh-c----C--CCccEEEE--EcCCCCcHHHHHHHHHHHhhhc---cCCC-eEEEEEccCCCChHHHHHHHH
Q 002939 2 STLKNVQNAL-L----D--PDISIIGM--YGMGGVGKTTLVKEVARRAKKD---MLFD-EVVFAEVSETPDIGKIQGELA 68 (864)
Q Consensus 2 ~~~~~i~~~l-~----~--~~~~vi~i--~G~~G~GKTtLa~~~~~~~~~~---~~f~-~~~~v~~~~~~~~~~~~~~i~ 68 (864)
.++++|.+++ . + ...+.+.| +|++|+||||||+++++..... ..++ .++|+++....+...++..++
T Consensus 29 ~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 108 (412)
T 1w5s_A 29 GEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIV 108 (412)
T ss_dssp HHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHH
Confidence 4567777777 3 2 34567777 9999999999999999886542 1223 368999888888999999999
Q ss_pred HHhCCccccchhhhhccccccCCCChhhHHHHHHHHHh-cCCeEEEEEcCCCchhc--------cccccCCCCCC---C-
Q 002939 69 DQLGMKFSQGEIADQRGMKFSQESDVPGRARKLYARLQ-KENKILVILDNIWEDLD--------LEKVGVPSGND---W- 135 (864)
Q Consensus 69 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LlvlDdv~~~~~--------~~~l~~~~~~~---~- 135 (864)
.+++..... ...+..+....+.+.+. .+++++||+||++.... +..+...+... .
T Consensus 109 ~~l~~~~~~------------~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 176 (412)
T 1w5s_A 109 RQTGYPIQV------------RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG 176 (412)
T ss_dssp HHHTCCCCC------------TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTS
T ss_pred HHhCCCCCC------------CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCC
Confidence 998654220 01223444555665554 26799999999976432 22221111111 1
Q ss_pred -CCcEEEEEeCChHHH-------h-hcC--CceEEcCCCCHHHHHHHHHHhhCCC-CCCCcchHHHHHHHHhcC------
Q 002939 136 -RGCKVLLTARDRHVL-------G-SIG--SKTFQIDVLNEEEAWTLFKKMTGDC-AEKGELNFVAIDITKECG------ 197 (864)
Q Consensus 136 -~gs~IivTtR~~~v~-------~-~~~--~~~~~l~~L~~~e~~~l~~~~~~~~-~~~~~~~~~~~~i~~~~~------ 197 (864)
....||+||+...+. . ... ...+++++++.++++++|..++... ......++....+++.++
T Consensus 177 ~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 177 VNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGD 256 (412)
T ss_dssp CCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSC
T ss_pred CceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCC
Confidence 234588788755432 1 111 2349999999999999998765210 111122456778999999
Q ss_pred CcchHHHHHH
Q 002939 198 GLPIAIVTLA 207 (864)
Q Consensus 198 g~Pla~~~~~ 207 (864)
|.|..+..++
T Consensus 257 G~p~~~~~l~ 266 (412)
T 1w5s_A 257 GSARRAIVAL 266 (412)
T ss_dssp CCHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 9997555443
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.14 E-value=9.5e-11 Score=110.16 Aligned_cols=101 Identities=27% Similarity=0.416 Sum_probs=80.1
Q ss_pred eEEEEeccccccCCcccccCCCccEEEecCcccccc--ccccccCcccEEeCCCCCCccCchh-hccccccceecccccc
Q 002939 367 KVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDI--RIIGELKELEILSLQGCDIEHLPRE-IGQLTQLKLLDLSYCF 443 (864)
Q Consensus 367 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~ 443 (864)
+.++++++.+..+|..+. .+|++|+|++|.++.+ ..+.++++|++|+|++|+++.+|.. +..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 677888888888887664 7888888888888877 3478888888888888888887765 4778888888888886
Q ss_pred cccccChhhhhcCcccceeeccccccc
Q 002939 444 ELKVIAPNVLSNLSQLEELYMATCCIK 470 (864)
Q Consensus 444 ~l~~~~~~~l~~l~~L~~L~l~~~~~~ 470 (864)
++.+++..+..+++|++|++++|.+.
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -cceeCHHHhccccCCCEEEeCCCCcc
Confidence 77887777788888888888888764
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.12 E-value=1.3e-10 Score=108.99 Aligned_cols=102 Identities=25% Similarity=0.315 Sum_probs=83.2
Q ss_pred ceEEEEeccccccCCcccccCCCccEEEecCcccccc--ccccccCcccEEeCCCCCCccCchh-hccccccceeccccc
Q 002939 366 LKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDI--RIIGELKELEILSLQGCDIEHLPRE-IGQLTQLKLLDLSYC 442 (864)
Q Consensus 366 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~ 442 (864)
.++++++++.++.+|..+. ++|++|+|++|.++.+ ..+.++++|++|+|++|+++.+|.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4678888888888887663 7888888888888887 3488888888888888888877654 578888999999888
Q ss_pred ccccccChhhhhcCcccceeeccccccc
Q 002939 443 FELKVIAPNVLSNLSQLEELYMATCCIK 470 (864)
Q Consensus 443 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 470 (864)
. ++.+++..+.++++|++|++++|.+.
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 Q-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred c-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6 88888877888888999988888764
No 146
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.06 E-value=3.5e-09 Score=114.32 Aligned_cols=206 Identities=14% Similarity=0.098 Sum_probs=129.0
Q ss_pred hHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcc----C--CCeEEEEEccCCC-ChHHHHHHHHHHh
Q 002939 3 TLKNVQNALL----DPDISIIGMYGMGGVGKTTLVKEVARRAKKDM----L--FDEVVFAEVSETP-DIGKIQGELADQL 71 (864)
Q Consensus 3 ~~~~i~~~l~----~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~----~--f~~~~~v~~~~~~-~~~~~~~~i~~~l 71 (864)
+++++.+++. ....+.+.|+|++|+||||+|+.+++...... . ...++|+++.... +...++..++.++
T Consensus 28 ~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l 107 (384)
T 2qby_B 28 ILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKL 107 (384)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHh
Confidence 4555555543 45567999999999999999999999864321 1 3457899988777 8888888888887
Q ss_pred C-CccccchhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchhc---cc----cccCCCCCCCCCcEEEEE
Q 002939 72 G-MKFSQGEIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDLD---LE----KVGVPSGNDWRGCKVLLT 143 (864)
Q Consensus 72 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~---~~----~l~~~~~~~~~gs~IivT 143 (864)
. ..... ...........+.+.+.. ++.+||+||++.... .+ .+.... .+.+||+|
T Consensus 108 ~~~~~~~------------~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~ 170 (384)
T 2qby_B 108 TGFSVPK------------HGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMI 170 (384)
T ss_dssp HCSCCCS------------SSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEE
T ss_pred cCCCCCC------------CCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEE
Confidence 2 21110 022334556677777764 344999999976532 12 222221 46789999
Q ss_pred eCChHH--------HhhcCCceEEcCCCCHHHHHHHHHHhhC-CCCCCCcchHHHHHHHHhcC---Ccch-HHHHHHHHh
Q 002939 144 ARDRHV--------LGSIGSKTFQIDVLNEEEAWTLFKKMTG-DCAEKGELNFVAIDITKECG---GLPI-AIVTLAKAL 210 (864)
Q Consensus 144 tR~~~v--------~~~~~~~~~~l~~L~~~e~~~l~~~~~~-~~~~~~~~~~~~~~i~~~~~---g~Pl-a~~~~~~~l 210 (864)
|+.... .... ...+.+++++.++..+++..++. ......-.++....+++.++ |.|. ++..+....
T Consensus 171 t~~~~~~~~l~~~l~sr~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~ 249 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSL-GPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAA 249 (384)
T ss_dssp CSSTTTTTTSCHHHHHTC-CCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcC-CCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 986522 1122 24899999999999999998762 11111222345667777777 8887 433333222
Q ss_pred --c---cCCChhHHHHHHHHh
Q 002939 211 --R---NKSCVSAWKDALRQL 226 (864)
Q Consensus 211 --~---~~~~~~~w~~~l~~l 226 (864)
. ..-+.+.+..++++.
T Consensus 250 ~~a~~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 250 QLASGGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HHTTSSSCCCHHHHHHHHHHH
T ss_pred HHhcCCCccCHHHHHHHHHHH
Confidence 1 122345565555543
No 147
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.02 E-value=3e-09 Score=115.12 Aligned_cols=187 Identities=13% Similarity=0.108 Sum_probs=120.4
Q ss_pred hHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhhhcc---C-CCeEEEEEccCCCChHHHHHHHHHHhCCc
Q 002939 3 TLKNVQNALL----DPDISIIGMYGMGGVGKTTLVKEVARRAKKDM---L-FDEVVFAEVSETPDIGKIQGELADQLGMK 74 (864)
Q Consensus 3 ~~~~i~~~l~----~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~---~-f~~~~~v~~~~~~~~~~~~~~i~~~l~~~ 74 (864)
+++++.+++. ....+.+.|+|++|+||||+|+.+++...... . -..++|+++....+...+...++.+++..
T Consensus 27 ~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~ 106 (387)
T 2v1u_A 27 ELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVR 106 (387)
T ss_dssp HHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCC
Confidence 5667777774 34567899999999999999999998764321 1 12467999988889999999999998653
Q ss_pred cccchhhhhccccccCCCChhhHHHHHHHHHhc-CCeEEEEEcCCCchhcc----cccc---CCCCCC--CCCcEEEEEe
Q 002939 75 FSQGEIADQRGMKFSQESDVPGRARKLYARLQK-ENKILVILDNIWEDLDL----EKVG---VPSGND--WRGCKVLLTA 144 (864)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LlvlDdv~~~~~~----~~l~---~~~~~~--~~gs~IivTt 144 (864)
... ......+....+.+.+.. +++.+||+||++..... +.+. ...... ..+..+|.||
T Consensus 107 ~~~------------~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 107 VPF------------TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp CCS------------SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred CCC------------CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 321 022344556667777653 56899999999865321 2221 111110 2355788888
Q ss_pred CChHH--------HhhcCCceEEcCCCCHHHHHHHHHHhhCC-CCCCCcchHHHHHHHHhcC---Ccch
Q 002939 145 RDRHV--------LGSIGSKTFQIDVLNEEEAWTLFKKMTGD-CAEKGELNFVAIDITKECG---GLPI 201 (864)
Q Consensus 145 R~~~v--------~~~~~~~~~~l~~L~~~e~~~l~~~~~~~-~~~~~~~~~~~~~i~~~~~---g~Pl 201 (864)
+.... ...+....+.+++++.++..+++...+.. .....-.++....+++.++ |.|.
T Consensus 175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r 243 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDAR 243 (387)
T ss_dssp SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHH
Confidence 76522 22222357899999999999999987621 0011112234556777777 9994
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.02 E-value=9.3e-10 Score=103.33 Aligned_cols=84 Identities=21% Similarity=0.315 Sum_probs=54.6
Q ss_pred CCceEEEEeccccccC-CcccccCCCccEEEecCccccccc--cccccCcccEEeCCCCCCccCchh-hccccccceecc
Q 002939 364 PKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDGCKLEDIR--IIGELKELEILSLQGCDIEHLPRE-IGQLTQLKLLDL 439 (864)
Q Consensus 364 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~l~--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l 439 (864)
++|++|+|++|.+..+ |..|.++++|++|+|++|+++.++ .+.++++|++|+|++|+++.+|.. +..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 5566666666666655 445666666777777766666663 256677777777777777766654 666777777777
Q ss_pred ccccccccc
Q 002939 440 SYCFELKVI 448 (864)
Q Consensus 440 ~~~~~l~~~ 448 (864)
++|. +...
T Consensus 113 ~~N~-~~c~ 120 (174)
T 2r9u_A 113 YNNP-WDCE 120 (174)
T ss_dssp CSSC-BCTT
T ss_pred CCCC-cccc
Confidence 7775 4443
No 149
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.00 E-value=1.4e-09 Score=117.71 Aligned_cols=189 Identities=16% Similarity=0.179 Sum_probs=120.6
Q ss_pred hHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhhhccC-CCeEEEEEccCCCChHHHHHHHHHHhCCcccc
Q 002939 3 TLKNVQNALL----DPDISIIGMYGMGGVGKTTLVKEVARRAKKDML-FDEVVFAEVSETPDIGKIQGELADQLGMKFSQ 77 (864)
Q Consensus 3 ~~~~i~~~l~----~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~ 77 (864)
+++++.+++. ....+.+.|+|++|+||||+|+.+++....... -..++|+++....+...+...++.+++.....
T Consensus 28 e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~ 107 (386)
T 2qby_A 28 QIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPF 107 (386)
T ss_dssp HHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCS
T ss_pred HHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 5667777776 345679999999999999999999998754311 23578999887777778888887777543220
Q ss_pred chhhhhccccccCCCChhhHHHHHHHHHhc-CCeEEEEEcCCCchhc------cccccCCCCC-CCCCcEEEEEeCChHH
Q 002939 78 GEIADQRGMKFSQESDVPGRARKLYARLQK-ENKILVILDNIWEDLD------LEKVGVPSGN-DWRGCKVLLTARDRHV 149 (864)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LlvlDdv~~~~~------~~~l~~~~~~-~~~gs~IivTtR~~~v 149 (864)
......+....+.+.+.. +++.+||+|+++...+ +..+...... ...+..+|+||+....
T Consensus 108 ------------~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 108 ------------TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp ------------SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred ------------CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 012344455666666654 4589999999975431 2222111110 1234577888886643
Q ss_pred Hhh--------cCCceEEcCCCCHHHHHHHHHHhhCC-CCCCCcchHHHHHHHHhcC---CcchHH
Q 002939 150 LGS--------IGSKTFQIDVLNEEEAWTLFKKMTGD-CAEKGELNFVAIDITKECG---GLPIAI 203 (864)
Q Consensus 150 ~~~--------~~~~~~~l~~L~~~e~~~l~~~~~~~-~~~~~~~~~~~~~i~~~~~---g~Pla~ 203 (864)
... +....+.+++++.++..+++...+.. .....-..+....+++.++ |.|..+
T Consensus 176 ~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~ 241 (386)
T 2qby_A 176 VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRA 241 (386)
T ss_dssp GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 221 11358999999999999999986521 1112223455667777777 998844
No 150
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.99 E-value=1.8e-09 Score=108.66 Aligned_cols=191 Identities=13% Similarity=0.117 Sum_probs=107.3
Q ss_pred hHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPD-ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~-~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
+++.+.+++...+ .+.+.|+|++|+||||+|+.+++.......+.. ......... ..+.........
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~----- 98 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDNC-REIEQGRFVDLI----- 98 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHHH-HHHHTTCCSSEE-----
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHHH-HHHhccCCcceE-----
Confidence 4566777776543 358999999999999999999988754321110 000001100 111100000000
Q ss_pred hhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEeCChHHHh--hc
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTARDRHVLG--SI 153 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~~v~~--~~ 153 (864)
... .......+....+.+.+. .+++.+||+||++.. ..++.+...+.....+.++|+||+...... ..
T Consensus 99 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~ 174 (250)
T 1njg_A 99 ---EID-AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 174 (250)
T ss_dssp ---EEE-TTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHH
T ss_pred ---Eec-CcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHH
Confidence 000 000011112223333221 246799999999753 334444433333344678899887654221 11
Q ss_pred C-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHHHHHh
Q 002939 154 G-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTLAKAL 210 (864)
Q Consensus 154 ~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~~~~l 210 (864)
. ...+++++++.++..+++.+.+.... ..-.++....+++.++|.|..+..+...+
T Consensus 175 ~r~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 175 SRCLQFHLKALDVEQIRHQLEHILNEEH-IAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhhccCCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2 46899999999999999998773211 11224566789999999999887765443
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.98 E-value=1.6e-08 Score=108.58 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=79.5
Q ss_pred CCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC-CcccccCCCccEEEecCcccccc--ccccccCcccEE
Q 002939 338 PQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDGCKLEDI--RIIGELKELEIL 414 (864)
Q Consensus 338 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~l--~~~~~l~~L~~L 414 (864)
..++.+.+.. ....++...|.++ +|+.+.+..+ ++.+ ...|.++ +|+.+.+.. .++.+ ..|.++.+|+.+
T Consensus 113 ~~l~~i~ip~---~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 113 KGYNEIILPN---SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp SSCSEEECCT---TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred CCccEEEECC---ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 4455555532 2335666777775 6888887665 6655 3456664 688888875 56655 457778888888
Q ss_pred eCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecc
Q 002939 415 SLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMA 465 (864)
Q Consensus 415 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 465 (864)
++..|+++.+|...-...+|+.+.+..+ +..++...|.++++|+.+.+.
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECC
T ss_pred ecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecC
Confidence 8888777777665545677888877643 677777777777777777654
No 152
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.98 E-value=3.1e-09 Score=105.06 Aligned_cols=175 Identities=11% Similarity=0.059 Sum_probs=108.5
Q ss_pred hHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhh
Q 002939 3 TLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIAD 82 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 82 (864)
+++++.+++...+.+.+.|+|++|+|||++|+.+++.......-...+.++.+.......+...+.......
T Consensus 25 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 96 (226)
T 2chg_A 25 VIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA-------- 96 (226)
T ss_dssp HHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSC--------
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhccc--------
Confidence 567788888776666699999999999999999998864432222345566555444333322221111100
Q ss_pred hccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCChHHHh--hcC-Cce
Q 002939 83 QRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARDRHVLG--SIG-SKT 157 (864)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~~v~~--~~~-~~~ 157 (864)
....+++.+||+||++... ..+.+...+.....+.++|+||+...... ... ...
T Consensus 97 ---------------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~ 155 (226)
T 2chg_A 97 ---------------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (226)
T ss_dssp ---------------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred ---------------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCce
Confidence 0012578899999997652 23333332322334678899988653211 112 458
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHHH
Q 002939 158 FQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTLA 207 (864)
Q Consensus 158 ~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~~ 207 (864)
+++++++.++..+++.+.+.... ..-.++....+++.++|.|..+..+.
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 156 FRFKPVPKEAMKKRLLEICEKEG-VKITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHT-CCBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 89999999999999998762111 11224556788899999998654443
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.97 E-value=1.6e-09 Score=101.43 Aligned_cols=80 Identities=26% Similarity=0.358 Sum_probs=52.9
Q ss_pred CCceEEEEeccccccC-CcccccCCCccEEEecCccccccc--cccccCcccEEeCCCCCCccCch-hhccccccceecc
Q 002939 364 PKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDGCKLEDIR--IIGELKELEILSLQGCDIEHLPR-EIGQLTQLKLLDL 439 (864)
Q Consensus 364 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~l~--~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l 439 (864)
++|++|+|++|.++.+ |..|.++++|++|+|++|.++.++ .+.++++|++|+|++|+++.+|. .+..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 5566666666666665 445666667777777777666652 25667777777777777776654 3666777777777
Q ss_pred cccc
Q 002939 440 SYCF 443 (864)
Q Consensus 440 ~~~~ 443 (864)
++|.
T Consensus 110 ~~N~ 113 (170)
T 3g39_A 110 LNNP 113 (170)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7775
No 154
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.89 E-value=2.7e-08 Score=107.52 Aligned_cols=189 Identities=15% Similarity=0.160 Sum_probs=123.3
Q ss_pred hHHHHHHHhcC----CCcc--EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccc
Q 002939 3 TLKNVQNALLD----PDIS--IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFS 76 (864)
Q Consensus 3 ~~~~i~~~l~~----~~~~--vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~ 76 (864)
+++++.+++.. .... .+.|+|++|+||||+|+.+++...... -..++|++++...+...+...++..++....
T Consensus 25 ~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~ 103 (389)
T 1fnn_A 25 QLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIARSLNIPFP 103 (389)
T ss_dssp HHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHHHHhCccCC
Confidence 45666666653 3334 899999999999999999998875431 1357889988888888999999988865322
Q ss_pred cchhhhhccccccCCCChhhHHHHHHHHHhc-CCeEEEEEcCCCch--hccccccCCCCCC-C---CCcEEEEEeCChHH
Q 002939 77 QGEIADQRGMKFSQESDVPGRARKLYARLQK-ENKILVILDNIWED--LDLEKVGVPSGND-W---RGCKVLLTARDRHV 149 (864)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LlvlDdv~~~--~~~~~l~~~~~~~-~---~gs~IivTtR~~~v 149 (864)
. .........+.+.+.+.. +++.+||+|+++.. .....+...+... . .+..||++|+....
T Consensus 104 ~------------~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 104 R------------RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp S------------SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred C------------CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 0 012334455555555543 56899999999764 2233332222211 1 35678888876643
Q ss_pred Hhh--------cCCceEEcCCCCHHHHHHHHHHhhCCC-CCCCcchHHHHHHHHhc---------CCcchHHH
Q 002939 150 LGS--------IGSKTFQIDVLNEEEAWTLFKKMTGDC-AEKGELNFVAIDITKEC---------GGLPIAIV 204 (864)
Q Consensus 150 ~~~--------~~~~~~~l~~L~~~e~~~l~~~~~~~~-~~~~~~~~~~~~i~~~~---------~g~Pla~~ 204 (864)
... +....+.+++++.++..+++...+... ....-.++....+++.+ .|.|..+.
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~ 244 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAI 244 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHH
Confidence 322 223479999999999999998876210 01122345667888888 78876443
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.79 E-value=7.7e-08 Score=103.86 Aligned_cols=106 Identities=11% Similarity=0.106 Sum_probs=55.9
Q ss_pred CCCchhhcCCCCceEEEEeccccccC-CcccccCCCccEEEecCcccccc--ccccccCcccEEeCCCCCCccCc-hhhc
Q 002939 354 KIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDGCKLEDI--RIIGELKELEILSLQGCDIEHLP-REIG 429 (864)
Q Consensus 354 ~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~i~~lp-~~~~ 429 (864)
.+...+|.++++|+.+.+.. .++.+ ..+|.++.+|+.+++..+ ++.+ ..|.++.+|+.+.+..+ +..+. ..+.
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence 35566677777777777753 35555 345777777777777543 4444 34666666666555433 33222 2233
Q ss_pred cccccceecccccccccccChhhhhcCcccceeecc
Q 002939 430 QLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMA 465 (864)
Q Consensus 430 ~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 465 (864)
.+..+...... ....+....|.++.+|+.+.+.
T Consensus 138 ~~~~~~~~~~~---~~~~i~~~aF~~c~~L~~i~l~ 170 (394)
T 4fs7_A 138 GCDFKEITIPE---GVTVIGDEAFATCESLEYVSLP 170 (394)
T ss_dssp TCCCSEEECCT---TCCEECTTTTTTCTTCCEEECC
T ss_pred cccccccccCc---cccccchhhhcccCCCcEEecC
Confidence 33222222221 1333444456666666666654
No 156
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=2.1e-08 Score=105.29 Aligned_cols=177 Identities=16% Similarity=0.100 Sum_probs=107.5
Q ss_pred chHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 2 STLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 2 ~~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.+++.+.+++...+.+.+.|+|++|+||||+|+.+++..........+++++.+.......+ +++++.+.....
T Consensus 28 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~----- 101 (323)
T 1sxj_B 28 ETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKHFAQKKL----- 101 (323)
T ss_dssp HHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHHHHHBCC-----
T ss_pred HHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHHHHhccc-----
Confidence 35677888888776666999999999999999999998643221122455555543332222 222221100000
Q ss_pred hhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEeCChHH-Hhh-cC-Cc
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTARDRHV-LGS-IG-SK 156 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~~v-~~~-~~-~~ 156 (864)
.+..+++.++|+||++.. ...+.+...+.....+.++|+||+.... ... .. ..
T Consensus 102 ----------------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 102 ----------------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp ----------------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred ----------------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce
Confidence 000246889999999764 2344443333333346788888876532 111 12 46
Q ss_pred eEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchH-HHHHH
Q 002939 157 TFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIA-IVTLA 207 (864)
Q Consensus 157 ~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-~~~~~ 207 (864)
.+++.+++.++..+++...+.... ..-.++....+++.++|.|.. +..+.
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLED-VKYTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHT-CCBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 899999999999999988762111 112245567899999999964 44443
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.76 E-value=2.4e-07 Score=99.95 Aligned_cols=325 Identities=14% Similarity=0.141 Sum_probs=172.9
Q ss_pred ccCCCCCC--cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC-CcccccCCCccEEEecCcccccc--
Q 002939 328 ISEIPQGW--ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDGCKLEDI-- 402 (864)
Q Consensus 328 ~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~l-- 402 (864)
++.+.... .|.+|+.+.+.. ....+...+|.++++|+.+++..+ ++.+ ...|.++.+|+.+.+..+ ++.+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~---~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS---TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT---TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred EeEhHHHHhhCCCCceEEEeCC---CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc
Confidence 44565543 788999998853 234678888999999999999754 5656 456888888888776643 3333
Q ss_pred ccccccCcccEEeCCCCCCccC-chhhccccccceecccccccccccChhhhhcCcccceeeccccc--c-ccccccCCc
Q 002939 403 RIIGELKELEILSLQGCDIEHL-PREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCC--I-KWEISNCSL 478 (864)
Q Consensus 403 ~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~-~~~~~~~~~ 478 (864)
..|.+...+....... +..+ ...+..+++|+.+.+..+ +..++...+.++.+|+.+.+..+- + ...+.+|..
T Consensus 134 ~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECIL 209 (394)
T ss_dssp TTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTT
T ss_pred eeeecccccccccCcc--ccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCceEeCchhhccccc
Confidence 3455554333332222 2222 345777888888888764 566777778888888888876542 1 123555555
Q ss_pred chhhhcCCCCccCCCCccCcccceecccccccccccccccccccCCCcceEEEeeCCCcccccccccccccccccCcccc
Q 002939 479 LEEIVGKEGGVEADPSFVFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKCFSSELYSLHENNEEGQLID 558 (864)
Q Consensus 479 L~~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~ 558 (864)
|+.+.+..+...- .........|+.+.+.. .+..+..
T Consensus 210 L~~i~~~~~~~~i-------------------------~~~~~~~~~l~~i~ip~--~~~~i~~---------------- 246 (394)
T 4fs7_A 210 LENMEFPNSLYYL-------------------------GDFALSKTGVKNIIIPD--SFTELGK---------------- 246 (394)
T ss_dssp CCBCCCCTTCCEE-------------------------CTTTTTTCCCCEEEECT--TCCEECS----------------
T ss_pred cceeecCCCceEe-------------------------ehhhcccCCCceEEECC--Cceeccc----------------
Confidence 5554332221100 00111223444444321 1111100
Q ss_pred cCCCccccccchhhhcCCcceeecccccccccccccccCcccccCccEEEeecCCccccchhHHHHcccccEEEEEcccc
Q 002939 559 VPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAPDLLERFHNLVNLELADGSY 638 (864)
Q Consensus 559 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 638 (864)
.....+..|+.+.+..+. ..+....+ ..+..++.+...... .+...+..+.+|+.+.+..+ +
T Consensus 247 ----------~~f~~~~~l~~~~~~~~~--~~i~~~~F--~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i 308 (394)
T 4fs7_A 247 ----------SVFYGCTDLESISIQNNK--LRIGGSLF--YNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-V 308 (394)
T ss_dssp ----------STTTTCSSCCEEEECCTT--CEECSCTT--TTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-C
T ss_pred ----------ccccccccceeEEcCCCc--ceeecccc--ccccccceeccCcee---eccccccccccccccccccc-c
Confidence 001124445555444331 00111111 113444544443322 22333556777777776532 4
Q ss_pred ccccccccchhhhcccccccceeecCCCcCccccccccccccccccccCccEEEeecccccccccC-CccccCCccEEEE
Q 002939 639 KELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLKNLLP-SSASFRCLTKLSV 717 (864)
Q Consensus 639 ~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l 717 (864)
+.+. ...+.+|.+|+.+.|.+ .++.| +......+.+|+.+.+.. +++.+.. .+..+++|+.+++
T Consensus 309 ~~I~------~~aF~~c~~L~~i~lp~--~v~~I-----~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 309 KFIG------EEAFESCTSLVSIDLPY--LVEEI-----GKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp CEEC------TTTTTTCTTCCEECCCT--TCCEE-----CTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEE
T ss_pred ceec------hhhhcCCCCCCEEEeCC--cccEE-----hHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEE
Confidence 3331 23466677777777754 35554 334455667777777754 2544433 3356777888877
Q ss_pred ecCcCceeeechhhhhhhccccEE
Q 002939 718 WCCEQLINLVTSSAAKNLVQLVTM 741 (864)
Q Consensus 718 ~~c~~l~~~~~~~~~~~l~~L~~L 741 (864)
.. +++.+ ...+.++++|+.+
T Consensus 374 p~--~~~~~--~~~F~~c~~L~~I 393 (394)
T 4fs7_A 374 PK--RLEQY--RYDFEDTTKFKWI 393 (394)
T ss_dssp EG--GGGGG--GGGBCTTCEEEEE
T ss_pred CC--CCEEh--hheecCCCCCcEE
Confidence 63 34433 2345666666654
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.74 E-value=9.9e-08 Score=102.40 Aligned_cols=204 Identities=13% Similarity=0.145 Sum_probs=116.8
Q ss_pred cceEEEeecCCccCCCCCC-cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccCCcccccCCCccEEEec
Q 002939 317 KCSTISLHGNNISEIPQGW-ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLD 395 (864)
Q Consensus 317 ~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~ 395 (864)
+++.+.+..+ ++.++... .-.+|+.+.+.. ....+....|.++++|+.+++.++.+..+|...-.+.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~---~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS---TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT---TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC---CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 4555555443 45554433 123566666643 233566666777777777777777777665443235677777776
Q ss_pred Ccccccc--ccccccCcccEEeCCCCCCccCchh-hccccccceecccccccccccChhhhhcCcccceeeccccccc--
Q 002939 396 GCKLEDI--RIIGELKELEILSLQGCDIEHLPRE-IGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCIK-- 470 (864)
Q Consensus 396 ~~~l~~l--~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~-- 470 (864)
.+ ++.+ ..|.++.+|+.+++..+ ++.++.. |.. .+|+.+.+.. .+..++...|.++++|+.+.+.++.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 33 5555 45677777777777653 5555433 333 6777777744 266777777777777777777665432
Q ss_pred -------cccccCCcchhhhcCCCCccCCCCc---cCcccceecccccccccccccccccccCCCcceEEEeeC
Q 002939 471 -------WEISNCSLLEEIVGKEGGVEADPSF---VFPRLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCC 534 (864)
Q Consensus 471 -------~~~~~~~~L~~L~~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 534 (864)
..+.+|++|+.+.+.. .+...... .+.+|+.+.+.. .+..+... .+..+ +|+.+.+.++
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~-aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA--NVTQINFS-AFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT--TCCEECTT-SSSSS-CCCEEEECCS
T ss_pred cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc--cccEEcHH-hCCCC-CCCEEEEcCC
Confidence 2466777777776653 23332222 334566665532 23333222 23345 6777776654
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.72 E-value=1.7e-08 Score=107.18 Aligned_cols=99 Identities=23% Similarity=0.286 Sum_probs=67.7
Q ss_pred EEEecc-ccccCCcccccCCCccEEEecC-cccccc--ccccccCcccEEeCCCCCCccCc-hhhccccccceecccccc
Q 002939 369 LLFIRM-RLLSLPSSIRLLTDLRTLCLDG-CKLEDI--RIIGELKELEILSLQGCDIEHLP-REIGQLTQLKLLDLSYCF 443 (864)
Q Consensus 369 L~L~~~-~i~~lp~~~~~l~~L~~L~L~~-~~l~~l--~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~ 443 (864)
++++++ .+..+|. +..+.+|++|+|++ |.++.+ ..|+++++|++|+|++|+++.+| ..|..|++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 466666 6777777 77777777777775 677766 34777777777777777777553 356777777777777775
Q ss_pred cccccChhhhhcCcccceeeccccccc
Q 002939 444 ELKVIAPNVLSNLSQLEELYMATCCIK 470 (864)
Q Consensus 444 ~l~~~~~~~l~~l~~L~~L~l~~~~~~ 470 (864)
+..+|+..+..++ |+.|++.+|.+.
T Consensus 92 -l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 -LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp -CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred -cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6777666555554 777777776654
No 160
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.71 E-value=1.6e-07 Score=95.57 Aligned_cols=161 Identities=7% Similarity=0.014 Sum_probs=100.9
Q ss_pred chHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCC----C-eEEEEEccCCCChHHHHHHHHHHhC
Q 002939 2 STLKNVQNALL----DPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLF----D-EVVFAEVSETPDIGKIQGELADQLG 72 (864)
Q Consensus 2 ~~~~~i~~~l~----~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f----~-~~~~v~~~~~~~~~~~~~~i~~~l~ 72 (864)
+++++|..+|. +...+.+.|+|++|+|||++|+.++++....... + .++++++....+...++..|++++.
T Consensus 27 ~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~ 106 (318)
T 3te6_A 27 EDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAIS 106 (318)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhc
Confidence 35566665554 5677899999999999999999999987643211 1 3678898888899999999999995
Q ss_pred CccccchhhhhccccccCCCChhhHHHHHHHHH--hcCCeEEEEEcCCCchhccccccCCC----CCCCCCcEEEEEeCC
Q 002939 73 MKFSQGEIADQRGMKFSQESDVPGRARKLYARL--QKENKILVILDNIWEDLDLEKVGVPS----GNDWRGCKVLLTARD 146 (864)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~LlvlDdv~~~~~~~~l~~~~----~~~~~gs~IivTtR~ 146 (864)
.... ........++.+.+.+ ..++.+++|+|+++...+-+.+...+ .... ...||.++..
T Consensus 107 g~~~-------------~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s-~~~vI~i~n~ 172 (318)
T 3te6_A 107 KENL-------------CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNS-KLSIICVGGH 172 (318)
T ss_dssp CCC---------------CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSC-CEEEEEECCS
T ss_pred CCCC-------------CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCC-cEEEEEEecC
Confidence 3211 0111233444555544 23678999999998654222221111 1111 1233444433
Q ss_pred hH-----HH----hhcCCceEEcCCCCHHHHHHHHHHhh
Q 002939 147 RH-----VL----GSIGSKTFQIDVLNEEEAWTLFKKMT 176 (864)
Q Consensus 147 ~~-----v~----~~~~~~~~~l~~L~~~e~~~l~~~~~ 176 (864)
.+ +. .+++...+.+++.+.+|..+++.+++
T Consensus 173 ~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 173 NVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp SCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred cccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 21 11 12223578999999999999999987
No 161
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.65 E-value=7.9e-08 Score=101.06 Aligned_cols=176 Identities=13% Similarity=0.083 Sum_probs=105.1
Q ss_pred hHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhh
Q 002939 3 TLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIAD 82 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 82 (864)
.++.+.+++...+.+.+.++|++|+||||+|+.+++.......-..++.++++.......+ +
T Consensus 33 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~----------------- 94 (327)
T 1iqp_A 33 IVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVI-R----------------- 94 (327)
T ss_dssp HHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTT-H-----------------
T ss_pred HHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHH-H-----------------
Confidence 4667777777776667999999999999999999998643211112344444321111000 0
Q ss_pred hccccccCCCChhhHHHHHHHH--HhcCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEeCChHHH-hhc--CC
Q 002939 83 QRGMKFSQESDVPGRARKLYAR--LQKENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTARDRHVL-GSI--GS 155 (864)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~~v~-~~~--~~ 155 (864)
+........ +..+++.++|+||++.. ...+.+...+.....+.++|+||...... ... ..
T Consensus 95 -------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 95 -------------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp -------------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred -------------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC
Confidence 000000000 11256789999999764 23444433332233467888888765321 111 13
Q ss_pred ceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHHHHHh
Q 002939 156 KTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTLAKAL 210 (864)
Q Consensus 156 ~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~~~~l 210 (864)
..+++.+++.++..+++...+.... ..-.++....+++.++|.|..+..+....
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEG-LELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTT-CEECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 5789999999999999988763211 11224566788999999998665444333
No 162
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.60 E-value=4.3e-09 Score=111.90 Aligned_cols=156 Identities=15% Similarity=0.072 Sum_probs=102.3
Q ss_pred hhhccceEEEeecCCccCCCC-----CC--cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC-----C
Q 002939 313 YLLKKCSTISLHGNNISEIPQ-----GW--ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL-----P 380 (864)
Q Consensus 313 ~~~~~l~~L~l~~~~~~~~~~-----~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-----p 380 (864)
..++.++.|++++|.++.... .+ ..++|+.|+++++..... -...++..+++|+.|+|++|.+... .
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPA-GLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHH-HHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHH-HHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 346688999999998763221 11 235888888887544321 1122334566788888888887632 1
Q ss_pred ccc-ccCCCccEEEecCcccccc------ccccccCcccEEeCCCCCCcc-----Cchhhccccccceeccccccccccc
Q 002939 381 SSI-RLLTDLRTLCLDGCKLEDI------RIIGELKELEILSLQGCDIEH-----LPREIGQLTQLKLLDLSYCFELKVI 448 (864)
Q Consensus 381 ~~~-~~l~~L~~L~L~~~~l~~l------~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~l~~~ 448 (864)
..+ ....+|++|+|++|.++.. ..+...++|++|+|++|.+.. ++..+...++|++|++++|. ++..
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~ 226 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDT 226 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHH
Confidence 222 2457788888888887653 334677888888888888762 35566677788888888886 5543
Q ss_pred Ch----hhhhcCcccceeeccccccc
Q 002939 449 AP----NVLSNLSQLEELYMATCCIK 470 (864)
Q Consensus 449 ~~----~~l~~l~~L~~L~l~~~~~~ 470 (864)
.. ..+...++|++|++++|.+.
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 22 22445678888888888764
No 163
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.56 E-value=1.1e-08 Score=108.66 Aligned_cols=151 Identities=17% Similarity=0.078 Sum_probs=99.9
Q ss_pred CCCceEEEecCCCCCCCC---CCchhhcCCCCceEEEEecccccc--CCcccccCCCccEEEecCcccccc--ccc----
Q 002939 337 CPQLEFFYIFAPEDSPLK---IPDNIFMGMPKLKVLLFIRMRLLS--LPSSIRLLTDLRTLCLDGCKLEDI--RII---- 405 (864)
Q Consensus 337 ~~~L~~L~l~~~~~~~~~---~~~~~~~~l~~Lr~L~L~~~~i~~--lp~~~~~l~~L~~L~L~~~~l~~l--~~~---- 405 (864)
.+.|+.|+++++...... +...+....++|++|+|++|.+.. +..-...+.+|++|+|++|.+++. ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 357889999875543211 111111234789999999998763 222234567899999999988764 222
Q ss_pred -cccCcccEEeCCCCCCcc-----CchhhccccccceecccccccccccC----hhhhhcCcccceeecccccccc----
Q 002939 406 -GELKELEILSLQGCDIEH-----LPREIGQLTQLKLLDLSYCFELKVIA----PNVLSNLSQLEELYMATCCIKW---- 471 (864)
Q Consensus 406 -~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~~~---- 471 (864)
...++|++|+|++|.++. ++..+..+++|++|++++|. +.... ...+...++|++|++++|.+..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 346789999999998863 45566778899999999996 65432 2335677889999999988753
Q ss_pred ----ccccCCcchhhhcCCCC
Q 002939 472 ----EISNCSLLEEIVGKEGG 488 (864)
Q Consensus 472 ----~~~~~~~L~~L~~~~~~ 488 (864)
.+..+++|+.|+++.|.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHhCCCCCEEeccCCC
Confidence 13334455555555543
No 164
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.53 E-value=4.1e-08 Score=89.96 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=18.7
Q ss_pred ccCeeecCccccccccccCCceeecCccceeecccCCCccc
Q 002939 769 KLESLDLNRLQSLTTFCSANYTFKFPSLCYLSVSACPKMKI 809 (864)
Q Consensus 769 ~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~ 809 (864)
+|+.|+|++|+++|+-... .+.++++|++|+|++|+.++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCCc
Confidence 4555555555555443221 123445555555555555443
No 165
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.50 E-value=1.6e-07 Score=99.64 Aligned_cols=88 Identities=24% Similarity=0.158 Sum_probs=63.6
Q ss_pred CCCchhhcCCCCceEEEEec-cccccCC-cccccCCCccEEEecCcccccc--ccccccCcccEEeCCCCCCccCchhhc
Q 002939 354 KIPDNIFMGMPKLKVLLFIR-MRLLSLP-SSIRLLTDLRTLCLDGCKLEDI--RIIGELKELEILSLQGCDIEHLPREIG 429 (864)
Q Consensus 354 ~~~~~~~~~l~~Lr~L~L~~-~~i~~lp-~~~~~l~~L~~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~i~~lp~~~~ 429 (864)
.+|. +..+++|++|+|++ |.+..+| ..|.++++|++|+|++|.++.+ ..|.++++|++|+|++|+++.+|..+.
T Consensus 23 ~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 100 (347)
T 2ifg_A 23 SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV 100 (347)
T ss_dssp TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc
Confidence 4565 46677778888875 7777775 4577788888888888877776 346778888888888888877766544
Q ss_pred cccccceecccccc
Q 002939 430 QLTQLKLLDLSYCF 443 (864)
Q Consensus 430 ~l~~L~~L~l~~~~ 443 (864)
....|+.|++.+|.
T Consensus 101 ~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 101 QGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCCEEECCSSC
T ss_pred ccCCceEEEeeCCC
Confidence 43348888888775
No 166
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.50 E-value=7.8e-07 Score=93.00 Aligned_cols=172 Identities=12% Similarity=0.082 Sum_probs=103.4
Q ss_pred hHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhh
Q 002939 3 TLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIAD 82 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 82 (864)
.++.+.+++...+.+.+.++|++|+|||++|+.+++.......-..++.++++......
T Consensus 25 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~--------------------- 83 (319)
T 2chq_A 25 VIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID--------------------- 83 (319)
T ss_dssp HHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTT---------------------
T ss_pred HHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChH---------------------
Confidence 35566666666666669999999999999999999886432110113444544321111
Q ss_pred hccccccCCCChhhHHHHHHHH--HhcCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEeCChH-HHhh-cC-C
Q 002939 83 QRGMKFSQESDVPGRARKLYAR--LQKENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTARDRH-VLGS-IG-S 155 (864)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~~-v~~~-~~-~ 155 (864)
...+........ +..+++.++|+|+++.. ...+.+...+.....+.++|+||.... +... .. .
T Consensus 84 ----------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 84 ----------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp ----------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred ----------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhC
Confidence 111111111100 11256789999999754 234445444444445678888887653 2111 12 4
Q ss_pred ceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHH
Q 002939 156 KTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTL 206 (864)
Q Consensus 156 ~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~ 206 (864)
..+++.+++.++..+++...+..... .-.++....+++.++|.+..+...
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGV-KITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCC-CBCHHHHHHHHHTTTTCHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 68999999999999999887732111 122455678889999998865443
No 167
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.47 E-value=1.1e-07 Score=87.08 Aligned_cols=89 Identities=12% Similarity=0.241 Sum_probs=63.0
Q ss_pred CccEEEeecccccccc-cCCccccCCccEEEEecCcCceeeechhhhhh----hccccEEEecCccchHHhhhccccccC
Q 002939 687 NLETLDISFCRNLKNL-LPSSASFRCLTKLSVWCCEQLINLVTSSAAKN----LVQLVTMKVDGCSKITELVVAIEADEA 761 (864)
Q Consensus 687 ~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~----l~~L~~L~l~~c~~l~~~~~~~~~~~~ 761 (864)
.|++|++++|. +++. ...+..+++|++|++++|..+++.. ...+.. +++|++|+|++|+++++-....+..
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g-L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-- 137 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGC-LERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-- 137 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHH-HHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG--
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHH-HHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc--
Confidence 57777777775 4332 2234578888888888888887753 233333 3578999999998888866555543
Q ss_pred cceeeccccCeeecCcccccccc
Q 002939 762 NEEIFFPKLESLDLNRLQSLTTF 784 (864)
Q Consensus 762 ~~~~~~~~L~~L~l~~c~~L~~l 784 (864)
+++|+.|+|++|+.+++.
T Consensus 138 -----~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 138 -----FRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp -----CTTCCEEEEESCTTCCCH
T ss_pred -----CCCCCEEECCCCCCCCch
Confidence 789999999999988874
No 168
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.40 E-value=2.8e-06 Score=90.92 Aligned_cols=188 Identities=14% Similarity=0.104 Sum_probs=101.8
Q ss_pred hHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPD-ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~-~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
+++.+.+++...+ ...+.|+|++|+||||+|+.+++.......+.. ..+. ... ....+... .........
T Consensus 24 ~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~---~~~-~~~~~~~~--~~~~~~~~~ 94 (373)
T 1jr3_A 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCG---VCD-NCREIEQG--RFVDLIEID 94 (373)
T ss_dssp HHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCS---SSH-HHHHHHTS--CCSSCEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCc---ccH-HHHHHhcc--CCCceEEec
Confidence 4566667776544 357899999999999999999988654321110 0000 001 11111110 000000000
Q ss_pred hhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEeCChHH-Hhh-c
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTARDRHV-LGS-I 153 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~~v-~~~-~ 153 (864)
.. .....+....+.+.+. .+++.++|+||++.. ...+.+...+.....+..+|++|....- ... .
T Consensus 95 ---~~----~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 167 (373)
T 1jr3_A 95 ---AA----SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (373)
T ss_dssp ---TT----CSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHH
T ss_pred ---cc----ccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHH
Confidence 00 0001112233334333 246789999999754 2334443333223345677777765432 111 1
Q ss_pred C-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHHH
Q 002939 154 G-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTLA 207 (864)
Q Consensus 154 ~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~~ 207 (864)
. ...+++.+++.++..+++.+.+.... ..-..+....+++.++|.|..+..+.
T Consensus 168 sr~~~i~~~~l~~~~~~~~l~~~~~~~~-~~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 168 SRCLQFHLKALDVEQIRHQLEHILNEEH-IAHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHT-CCBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred hheeEeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 2 57899999999999999988762111 11123456689999999999776544
No 169
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.38 E-value=3.7e-07 Score=91.09 Aligned_cols=161 Identities=12% Similarity=0.100 Sum_probs=96.4
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhh
Q 002939 4 LKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQ 83 (864)
Q Consensus 4 ~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 83 (864)
++.+..+......+.+.|+|++|+||||+|+.+++..... ...++|+++...... +
T Consensus 40 ~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~----------~------------ 95 (242)
T 3bos_A 40 IGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI----------S------------ 95 (242)
T ss_dssp HHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS----------C------------
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH----------H------------
Confidence 4455555555567899999999999999999999987654 345677776542110 0
Q ss_pred ccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchhc----cccccCCCCC-CCCCc-EEEEEeCChH---------
Q 002939 84 RGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDLD----LEKVGVPSGN-DWRGC-KVLLTARDRH--------- 148 (864)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~----~~~l~~~~~~-~~~gs-~IivTtR~~~--------- 148 (864)
... .+.+ .+..+||+||++.... .+.+...+.. ...+. +||+||+...
T Consensus 96 -----------~~~----~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 96 -----------TAL----LEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp -----------GGG----GTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHH
T ss_pred -----------HHH----HHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhh
Confidence 000 0011 3456899999865422 1222111110 01122 4788776321
Q ss_pred HHhhcC-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHH
Q 002939 149 VLGSIG-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTL 206 (864)
Q Consensus 149 v~~~~~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~ 206 (864)
+...+. ...+++++++.++..+++...+.... ..-.++....+++.+.|.+-.+..+
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRG-LQLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTT-CCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHccCCHHHHHHH
Confidence 112222 37899999999999999988772111 1122456678888999988765443
No 170
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.38 E-value=7.9e-06 Score=82.88 Aligned_cols=177 Identities=15% Similarity=0.145 Sum_probs=95.9
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCC
Q 002939 13 DPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQES 92 (864)
Q Consensus 13 ~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 92 (864)
....+.+.|+|++|+|||++|+.+++.... . .+.++++... .+.. ..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~----~-~~~i~~~~~~------------~g~~----------------~~ 107 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNF----P-FIKICSPDKM------------IGFS----------------ET 107 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTC----S-EEEEECGGGC------------TTCC----------------HH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCC----C-EEEEeCHHHh------------cCCc----------------hH
Confidence 445678999999999999999999997432 2 3333433210 0000 00
Q ss_pred ChhhHHHHHHHHHhcCCeEEEEEcCCCchh------------ccccccCCCC---CCCCCcEEEEEeCChHHHhh---cC
Q 002939 93 DVPGRARKLYARLQKENKILVILDNIWEDL------------DLEKVGVPSG---NDWRGCKVLLTARDRHVLGS---IG 154 (864)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~------------~~~~l~~~~~---~~~~gs~IivTtR~~~v~~~---~~ 154 (864)
........+.+.....+..+|++||++... -.+.+...+. .......||.||........ .+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~ 187 (272)
T 1d2n_A 108 AKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN 187 (272)
T ss_dssp HHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc
Confidence 001122233333334678999999986530 1122211111 12223457778877755443 12
Q ss_pred --CceEEcCCCCH-HHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCc------chHHHHHHHHhccCCChhHHHHHHHH
Q 002939 155 --SKTFQIDVLNE-EEAWTLFKKMTGDCAEKGELNFVAIDITKECGGL------PIAIVTLAKALRNKSCVSAWKDALRQ 225 (864)
Q Consensus 155 --~~~~~l~~L~~-~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~------Pla~~~~~~~l~~~~~~~~w~~~l~~ 225 (864)
...+.+++++. ++...++.+... . .++....+++.+.|+ +.++.++-.. ........++.+++.
T Consensus 188 rf~~~i~~p~l~~r~~i~~i~~~~~~--~----~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a-~~~~~~~~~~~~~~~ 260 (272)
T 1d2n_A 188 AFSTTIHVPNIATGEQLLEALELLGN--F----KDKERTTIAQQVKGKKVWIGIKKLLMLIEMS-LQMDPEYRVRKFLAL 260 (272)
T ss_dssp TSSEEEECCCEEEHHHHHHHHHHHTC--S----CHHHHHHHHHHHTTSEEEECHHHHHHHHHHH-TTSCGGGHHHHHHHH
T ss_pred ccceEEcCCCccHHHHHHHHHHhcCC--C----CHHHHHHHHHHhcCCCccccHHHHHHHHHHH-hhhchHHHHHHHHHH
Confidence 46789999988 666666665321 1 134566788888884 3333333322 222234566666665
Q ss_pred hcCC
Q 002939 226 LKRP 229 (864)
Q Consensus 226 l~~~ 229 (864)
+...
T Consensus 261 l~~~ 264 (272)
T 1d2n_A 261 LREE 264 (272)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 5443
No 171
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.35 E-value=3.2e-06 Score=86.56 Aligned_cols=155 Identities=16% Similarity=0.174 Sum_probs=88.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCC
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESD 93 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 93 (864)
...+.+.|+|++|+|||++|+.+++..... .+.+.++..... . ...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~-----~~~v~~~~~~~~--------------~---------------~~~ 94 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNAT-----FIRVVGSELVKK--------------F---------------IGE 94 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCE-----EEEEEGGGGCCC--------------S---------------TTH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehHHHHHh--------------c---------------cch
Confidence 345689999999999999999999876432 344444321110 0 011
Q ss_pred hhhHHHHHHHHHhcCCeEEEEEcCCCchh----------------ccccccCCCC--CCCCCcEEEEEeCChHHHh----
Q 002939 94 VPGRARKLYARLQKENKILVILDNIWEDL----------------DLEKVGVPSG--NDWRGCKVLLTARDRHVLG---- 151 (864)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~LlvlDdv~~~~----------------~~~~l~~~~~--~~~~gs~IivTtR~~~v~~---- 151 (864)
.......+.......+..+|++||++... .+..+...+. ....+..||.||.......
T Consensus 95 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~ 174 (285)
T 3h4m_A 95 GASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAIL 174 (285)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHc
Confidence 12223344444444667899999996531 0111111110 1123557777887553222
Q ss_pred -hcC-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCc-chHHH
Q 002939 152 -SIG-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGL-PIAIV 204 (864)
Q Consensus 152 -~~~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pla~~ 204 (864)
... ...+.++..+.++..+++...+.......+. ....+++.+.|. |-.+.
T Consensus 175 ~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~--~~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 175 RPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDV--NLEEIAKMTEGCVGAELK 228 (285)
T ss_dssp STTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHHCTTCCHHHHH
T ss_pred CCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcC--CHHHHHHHcCCCCHHHHH
Confidence 112 4578999999999999999887432221111 134677777774 43443
No 172
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.32 E-value=8.1e-06 Score=82.38 Aligned_cols=157 Identities=18% Similarity=0.170 Sum_probs=87.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
.+.|.|+|++|+|||++|+.+++.... ..+.++++...+.. .....
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~~~~~~~~~~~-----------------------------~~~~~ 84 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQV-----PFLAMAGAEFVEVI-----------------------------GGLGA 84 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTC-----CEEEEETTTTSSSS-----------------------------TTHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEechHHHHhhc-----------------------------cChhH
Confidence 467899999999999999999987643 24555554321100 00011
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCchh-------------c----cccccCCCC--CCCCCcEEEEEeCChHHHh----h
Q 002939 96 GRARKLYARLQKENKILVILDNIWEDL-------------D----LEKVGVPSG--NDWRGCKVLLTARDRHVLG----S 152 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~~~-------------~----~~~l~~~~~--~~~~gs~IivTtR~~~v~~----~ 152 (864)
.....+.+........+|++|+++... . +..+...+. ....+..||.||....... .
T Consensus 85 ~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~ 164 (262)
T 2qz4_A 85 ARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMR 164 (262)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGS
T ss_pred HHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhc
Confidence 222333444434567899999997541 0 111111111 1123456777776554222 1
Q ss_pred c-C-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcch-HHHHH
Q 002939 153 I-G-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPI-AIVTL 206 (864)
Q Consensus 153 ~-~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-a~~~~ 206 (864)
. . ...+.++..+.++..+++.+++...............+++.+.|++- .+..+
T Consensus 165 ~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 165 PGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp TTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 1 2 46788999999999999988773222222222234678888888754 44433
No 173
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.31 E-value=5e-06 Score=86.94 Aligned_cols=183 Identities=10% Similarity=0.049 Sum_probs=99.4
Q ss_pred hHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPDI-SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
..+.+...+.+++. ..+.++|+.|+|||++|+.+++.......-+ ......-...+.+...-..+.. ...
T Consensus 10 ~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-------~~~c~~c~~c~~~~~~~~~d~~--~~~ 80 (334)
T 1a5t_A 10 DFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQG-------HKSCGHCRGCQLMQAGTHPDYY--TLA 80 (334)
T ss_dssp HHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-------TBCCSCSHHHHHHHHTCCTTEE--EEC
T ss_pred HHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-------CCCCCCCHHHHHHhcCCCCCEE--EEe
Confidence 45566777776654 5799999999999999999998865332100 0000000001111100000000 000
Q ss_pred hhccccccCCCChhhHHHHHHHHHh----cCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCChH-HHhhc-
Q 002939 82 DQRGMKFSQESDVPGRARKLYARLQ----KENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARDRH-VLGSI- 153 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~~-v~~~~- 153 (864)
...+ ......+..+.+.+.+. .+++-++|+|+++... ..+.+...+.....+..+|++|.+.+ +....
T Consensus 81 ~~~~----~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~ 156 (334)
T 1a5t_A 81 PEKG----KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLR 156 (334)
T ss_dssp CCTT----CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHH
T ss_pred cccc----CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHh
Confidence 0000 00011122233333332 2467899999997652 23334333333334567777777653 22222
Q ss_pred C-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHH
Q 002939 154 G-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIV 204 (864)
Q Consensus 154 ~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~ 204 (864)
. ...+++++++.++..+++.... .-.++.+..+++.++|.|..+.
T Consensus 157 SRc~~~~~~~~~~~~~~~~L~~~~------~~~~~~~~~l~~~s~G~~r~a~ 202 (334)
T 1a5t_A 157 SRCRLHYLAPPPEQYAVTWLSREV------TMSQDALLAALRLSAGSPGAAL 202 (334)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHC------CCCHHHHHHHHHHTTTCHHHHH
T ss_pred hcceeeeCCCCCHHHHHHHHHHhc------CCCHHHHHHHHHHcCCCHHHHH
Confidence 2 5789999999999999998875 1123455678999999997554
No 174
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.30 E-value=1.8e-06 Score=90.64 Aligned_cols=169 Identities=15% Similarity=0.192 Sum_probs=86.1
Q ss_pred HHHcccccEEEEEcccccc--ccc-cccchhhhcccccccceeecCCCcCccccccccccccccccccCccEEEeecccc
Q 002939 622 LERFHNLVNLELADGSYKE--LFS-NEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRN 698 (864)
Q Consensus 622 ~~~l~~L~~L~l~~~~l~~--~~~-~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~ 698 (864)
...+++|+.|.+.+....+ +.. ..+.+...+..+|+|+.|.|+++..++ + . . ...++|++|++..|.-
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l-----~--~-~~~~~L~~L~L~~~~l 205 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-I-----G--K-KPRPNLKSLEIISGGL 205 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-C-----C--S-CBCTTCSEEEEECSBC
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-e-----c--c-ccCCCCcEEEEecCCC
Confidence 3456777777775433211 000 012344555667777777777653221 1 0 0 1256777777776532
Q ss_pred cccccCCc--cccCCccEEEEecCcC-------ceeeechhhhhhhccccEEEecCccchHHhhhccccccCcceeeccc
Q 002939 699 LKNLLPSS--ASFRCLTKLSVWCCEQ-------LINLVTSSAAKNLVQLVTMKVDGCSKITELVVAIEADEANEEIFFPK 769 (864)
Q Consensus 699 l~~~~~~~--~~~~~L~~L~l~~c~~-------l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 769 (864)
-......+ ..+|+|+.|+++.+.+ +..+...-....+|+|+.|++.+|......+..... ...+|+
T Consensus 206 ~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~-----a~~~~~ 280 (362)
T 2ra8_A 206 PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE-----SDILPQ 280 (362)
T ss_dssp CHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH-----CSSGGG
T ss_pred ChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh-----CccCCC
Confidence 11111111 2567777777753211 111110001124677888888776654332211110 013678
Q ss_pred cCeeecCcccccccccc---CCceeecCccceeecccCC
Q 002939 770 LESLDLNRLQSLTTFCS---ANYTFKFPSLCYLSVSACP 805 (864)
Q Consensus 770 L~~L~l~~c~~L~~l~~---~~~~~~~~~L~~L~i~~C~ 805 (864)
|+.|+|+. +.+++... ...+.++++|+.|++++|.
T Consensus 281 L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 281 LETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 88888876 56766211 0223567888888888775
No 175
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.29 E-value=3.9e-06 Score=91.05 Aligned_cols=169 Identities=11% Similarity=0.122 Sum_probs=99.1
Q ss_pred HHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhc
Q 002939 6 NVQNALLDPD-ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQR 84 (864)
Q Consensus 6 ~i~~~l~~~~-~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 84 (864)
.+..+....+ ...+.|+|++|+||||||+.+++.......-..++++++.. +..++...+...
T Consensus 119 ~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~------~~~~~~~~~~~~---------- 182 (440)
T 2z4s_A 119 AALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK------FLNDLVDSMKEG---------- 182 (440)
T ss_dssp HHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH------HHHHHHHHHHTT----------
T ss_pred HHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHHHHHHcc----------
Confidence 3344444433 67899999999999999999999875442123366776543 333444443210
Q ss_pred cccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchhc----cccccCCCCC-CCCCcEEEEEeCCh---------HHH
Q 002939 85 GMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDLD----LEKVGVPSGN-DWRGCKVLLTARDR---------HVL 150 (864)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~----~~~l~~~~~~-~~~gs~IivTtR~~---------~v~ 150 (864)
....+.+.+. .+.-+||+||++.... -+.+...+.. ...|..||+||... .+.
T Consensus 183 ------------~~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~ 249 (440)
T 2z4s_A 183 ------------KLNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLV 249 (440)
T ss_dssp ------------CHHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHH
T ss_pred ------------cHHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHH
Confidence 0122333332 2667999999965431 1222211110 12366889988763 222
Q ss_pred hhcC-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHH
Q 002939 151 GSIG-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIV 204 (864)
Q Consensus 151 ~~~~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~ 204 (864)
.++. ...+.+++++.++..+++.+.+.... ..-.++....|++.+.|.+-.+.
T Consensus 250 sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~-~~i~~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 250 SRFQMGLVAKLEPPDEETRKSIARKMLEIEH-GELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHSSBCCBCCCCCHHHHHHHHHHHHHHHT-CCCCTTHHHHHHHHCCSCHHHHH
T ss_pred hhccCCeEEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCHHHHH
Confidence 2232 36789999999999999988772100 01112345678888888886553
No 176
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.25 E-value=2.8e-05 Score=80.58 Aligned_cols=156 Identities=18% Similarity=0.180 Sum_probs=91.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
.+.|.++|++|+|||++|+.+++.... ...+.++++.-.. .. .....
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~~l~~--------------~~---------------~g~~~ 91 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDLVS--------------KW---------------LGESE 91 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECCSSCC--------------SS---------------CCSCH
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhHHHHh--------------hh---------------hhHHH
Confidence 478999999999999999999998621 1234455443211 00 01122
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCchhc-------------cccccC---CCCCCCCCcEEEEEeCChH-----HHhhcC
Q 002939 96 GRARKLYARLQKENKILVILDNIWEDLD-------------LEKVGV---PSGNDWRGCKVLLTARDRH-----VLGSIG 154 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~---~~~~~~~gs~IivTtR~~~-----v~~~~~ 154 (864)
.....+.+.....+..+|++|+++.... ...+.. .+.....+..||.||.... +..++
T Consensus 92 ~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf- 170 (322)
T 1xwi_A 92 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRF- 170 (322)
T ss_dssp HHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTC-
T ss_pred HHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhc-
Confidence 3344455555456788999999976511 011111 1111123445565665432 22222
Q ss_pred CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCc-chHHHHH
Q 002939 155 SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGL-PIAIVTL 206 (864)
Q Consensus 155 ~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pla~~~~ 206 (864)
...+.++..+.++..+++..++...... ..+.....+++.+.|+ +-.+..+
T Consensus 171 ~~~i~i~~P~~~~r~~il~~~l~~~~~~-l~~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 171 EKRIYIPLPEPHARAAMFKLHLGTTQNS-LTEADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHTTCCBC-CCHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CeEEEeCCcCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 4778899999999999999887432221 1234566889999887 4345444
No 177
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=4.6e-06 Score=88.47 Aligned_cols=185 Identities=12% Similarity=0.096 Sum_probs=104.5
Q ss_pred chHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCC-CeEEEEEccCCCChHHHHHHHHHHhCCccccchh
Q 002939 2 STLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLF-DEVVFAEVSETPDIGKIQGELADQLGMKFSQGEI 80 (864)
Q Consensus 2 ~~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 80 (864)
..++.+..++.....+.+.|+|++|+||||+|+.+++.......+ ..++.++++.......+ ++..........
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---- 118 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKNFARLTV---- 118 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHHHHHSCC----
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHHHhhhcc----
Confidence 457788888887765569999999999999999999885421111 22445555543333322 111111100000
Q ss_pred hhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCChH-HHhhcC--C
Q 002939 81 ADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARDRH-VLGSIG--S 155 (864)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~~-v~~~~~--~ 155 (864)
....... ......++.-++++|+++... ..+.+...+.......++|++|.... +..... .
T Consensus 119 ----------~~~~~~~----~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 119 ----------SKPSKHD----LENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp ----------CCCCTTH----HHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred ----------cccchhh----cccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 0000000 001112456799999986542 22333222222223557777776543 222111 4
Q ss_pred ceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHH
Q 002939 156 KTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTL 206 (864)
Q Consensus 156 ~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~ 206 (864)
..+++.+++.++..+++...+.... ..-.++....+++.++|.|..+..+
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~-~~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQEN-VKCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 6889999999999999988763211 1122456778999999999865433
No 178
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.20 E-value=3.3e-06 Score=88.35 Aligned_cols=165 Identities=14% Similarity=0.137 Sum_probs=94.0
Q ss_pred HHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccc
Q 002939 4 LKNVQNALL-----DPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQG 78 (864)
Q Consensus 4 ~~~i~~~l~-----~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~ 78 (864)
++++.+++. ....+.+.|+|++|+|||++|+.+++.... ..+++++.......++.. .+..
T Consensus 21 ~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~~----~l~~----- 86 (324)
T 1hqc_A 21 KQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLAA----ILAN----- 86 (324)
T ss_dssp HHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHHH----HHTT-----
T ss_pred HHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHHH----HHHH-----
Confidence 344555543 233468899999999999999999987642 245565554333222211 1110
Q ss_pred hhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchh--ccccccCCC---------CC---------CCCCc
Q 002939 79 EIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDL--DLEKVGVPS---------GN---------DWRGC 138 (864)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~---------~~---------~~~gs 138 (864)
.+ .+..+|++|+++... ..+.+...+ .. ...+.
T Consensus 87 -------------------------~~--~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 87 -------------------------SL--EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp -------------------------TC--CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred -------------------------hc--cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 00 244567777775432 111110000 00 00134
Q ss_pred EEEEEeCChHHH-hhc-C--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHHHHHh
Q 002939 139 KVLLTARDRHVL-GSI-G--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTLAKAL 210 (864)
Q Consensus 139 ~IivTtR~~~v~-~~~-~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~~~~l 210 (864)
++|.||...... ... . ...+.+.+++.++..+++.+.+.... ..-.++....+++.+.|.|..+..+...+
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG-VRITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 677766644221 111 1 36789999999999999988773211 11224567789999999998877665544
No 179
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.20 E-value=4.3e-05 Score=82.20 Aligned_cols=107 Identities=14% Similarity=0.206 Sum_probs=55.5
Q ss_pred HHHHcccccEEEEEccccccccccccchhhhcccccccceeecCCCcCccccccccccccccccccCccEEEeecccccc
Q 002939 621 LLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISFCRNLK 700 (864)
Q Consensus 621 ~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 700 (864)
.|..+..|+.+.+..+.. .+. ...+.++++|+.+.+.+ .++.+ +......+.+|+.+.|.. +++
T Consensus 260 aF~~c~~L~~i~lp~~~~-~I~------~~aF~~c~~L~~i~l~~--~i~~I-----~~~aF~~c~~L~~i~lp~--~v~ 323 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV-SIG------TGAFMNCPALQDIEFSS--RITEL-----PESVFAGCISLKSIDIPE--GIT 323 (394)
T ss_dssp TTTTCSSCCEEECCTTCC-EEC------TTTTTTCTTCCEEECCT--TCCEE-----CTTTTTTCTTCCEEECCT--TCC
T ss_pred eeeecccccEEecccccc-eec------CcccccccccccccCCC--ccccc-----CceeecCCCCcCEEEeCC--ccc
Confidence 345556666665542211 111 12345566666666643 34443 223344556666666643 244
Q ss_pred cccC-CccccCCccEEEEecCcCceeeechhhhhhhccccEEEecCc
Q 002939 701 NLLP-SSASFRCLTKLSVWCCEQLINLVTSSAAKNLVQLVTMKVDGC 746 (864)
Q Consensus 701 ~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 746 (864)
.+.. .+..+.+|+++.|-. +++.+. ...+.+|++|+.+++.+.
T Consensus 324 ~I~~~aF~~C~~L~~i~ip~--sv~~I~-~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 324 QILDDAFAGCEQLERIAIPS--SVTKIP-ESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EECTTTTTTCTTCCEEEECT--TCCBCC-GGGGTTCTTCCEEEESSC
T ss_pred EehHhHhhCCCCCCEEEECc--ccCEEh-HhHhhCCCCCCEEEECCc
Confidence 3322 234566777777752 455552 455667777777777663
No 180
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.19 E-value=2.5e-06 Score=89.62 Aligned_cols=57 Identities=28% Similarity=0.247 Sum_probs=27.8
Q ss_pred hhcCCCCceEEEEeccccccCCcccccCCCccEEEecCcccccc--cccc--ccCcccEEeCC
Q 002939 359 IFMGMPKLKVLLFIRMRLLSLPSSIRLLTDLRTLCLDGCKLEDI--RIIG--ELKELEILSLQ 417 (864)
Q Consensus 359 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l--~~~~--~l~~L~~L~l~ 417 (864)
++..+++|+.|.++++.-..++. +. +++|+.|+|..|.+..- ..+. .+++|++|+|+
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 34555566666665553123333 22 55666666665554321 2222 45566666553
No 181
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.18 E-value=2.6e-05 Score=81.05 Aligned_cols=155 Identities=19% Similarity=0.176 Sum_probs=91.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
.+.|.++|++|+|||++|+.+++..... .+.++++. +.... .....
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~v~~~~----------l~~~~-------------------~g~~~ 96 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSSD----------LVSKW-------------------MGESE 96 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCE-----EEEEEHHH----------HHTTT-------------------GGGHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCC-----EEEEchHH----------Hhhcc-------------------cchHH
Confidence 4679999999999999999999885432 34454321 11000 00112
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCchhc-------------ccccc---CCCCCCCCCcEEEEEeCChHH-----HhhcC
Q 002939 96 GRARKLYARLQKENKILVILDNIWEDLD-------------LEKVG---VPSGNDWRGCKVLLTARDRHV-----LGSIG 154 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~---~~~~~~~~gs~IivTtR~~~v-----~~~~~ 154 (864)
.....+.+.....+..+|++|+++.... ...+. ..+.....+..||.||..... ..++
T Consensus 97 ~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf- 175 (322)
T 3eie_A 97 KLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRF- 175 (322)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHC-
T ss_pred HHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHccc-
Confidence 2334444455446778999999975421 11111 111112235566667765432 2222
Q ss_pred CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCc-chHHHHH
Q 002939 155 SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGL-PIAIVTL 206 (864)
Q Consensus 155 ~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pla~~~~ 206 (864)
...+.++..+.++..+++..++...... ..+.....+++.+.|+ +-.+..+
T Consensus 176 ~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 176 ERRIYIPLPDLAARTTMFEINVGDTPCV-LTKEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHTTCCCC-CCHHHHHHHHHTTTTCCHHHHHHH
T ss_pred CeEEEeCCCCHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 4678899999999999999988543221 1234566888888874 4444433
No 182
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.17 E-value=9.8e-07 Score=84.51 Aligned_cols=142 Identities=12% Similarity=0.115 Sum_probs=79.4
Q ss_pred chHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhcc-----CCCeEEEEEccCCCChHHHHHHHHHHhCCccc
Q 002939 2 STLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDM-----LFDEVVFAEVSETPDIGKIQGELADQLGMKFS 76 (864)
Q Consensus 2 ~~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~-----~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~ 76 (864)
++++++.+++.....+.+.|+|++|+|||++|+.+++...... ....++++++... ......
T Consensus 29 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 95 (195)
T 1jbk_A 29 EEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL-------------VAGAKY 95 (195)
T ss_dssp HHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHH-------------HTTTCS
T ss_pred HHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHH-------------hccCCc
Confidence 3567888888877677899999999999999999999864321 1123455544211 000000
Q ss_pred cchhhhhccccccCCCChhhHHHHHHHHHh-cCCeEEEEEcCCCchh---------c-cccccCCCCCCCCCcEEEEEeC
Q 002939 77 QGEIADQRGMKFSQESDVPGRARKLYARLQ-KENKILVILDNIWEDL---------D-LEKVGVPSGNDWRGCKVLLTAR 145 (864)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LlvlDdv~~~~---------~-~~~l~~~~~~~~~gs~IivTtR 145 (864)
..........+.+.+. .++..+||+||++... + .+.+...+. . .+..+|.||.
T Consensus 96 --------------~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~-~~~~~i~~~~ 159 (195)
T 1jbk_A 96 --------------RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-R-GELHCVGATT 159 (195)
T ss_dssp --------------HHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-T-TSCCEEEEEC
T ss_pred --------------cccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-c-CCeEEEEeCC
Confidence 0001122223333332 3568899999997642 1 111111111 1 2345777776
Q ss_pred ChHHHh-------hcC-CceEEcCCCCHHHHHHHH
Q 002939 146 DRHVLG-------SIG-SKTFQIDVLNEEEAWTLF 172 (864)
Q Consensus 146 ~~~v~~-------~~~-~~~~~l~~L~~~e~~~l~ 172 (864)
...... ..+ ...+.+++++.++..+++
T Consensus 160 ~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 554221 111 236889999988877653
No 183
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.12 E-value=2.5e-05 Score=82.33 Aligned_cols=158 Identities=13% Similarity=0.080 Sum_probs=89.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
..+.|.|+|++|+|||++|+.+++.... ..+.++++..... . ....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~~--------------~---------------~g~~ 161 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTSK--------------W---------------VGEG 161 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCCS--------------S---------------TTHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhcc--------------c---------------cchH
Confidence 3578999999999999999999987532 2456665432110 0 0011
Q ss_pred hhHHHHHHHHHhcCCeEEEEEcCCCchhc-------------cccccCCCC----CCCCCcEEEEEeCChHHHh--hc-C
Q 002939 95 PGRARKLYARLQKENKILVILDNIWEDLD-------------LEKVGVPSG----NDWRGCKVLLTARDRHVLG--SI-G 154 (864)
Q Consensus 95 ~~~~~~~~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~----~~~~gs~IivTtR~~~v~~--~~-~ 154 (864)
......+.......+..+|+||+++.... ...+...+. ....+..||.||....... .. +
T Consensus 162 ~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R 241 (357)
T 3d8b_A 162 EKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRR 241 (357)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTT
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhh
Confidence 12223333444346778999999854311 111211111 1122445666775542211 11 2
Q ss_pred -CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCc-chHHHHHH
Q 002939 155 -SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGL-PIAIVTLA 207 (864)
Q Consensus 155 -~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pla~~~~~ 207 (864)
...+.+...+.++..+++...+.... ..-.+.....+++.+.|+ +-.+..+.
T Consensus 242 f~~~i~i~~p~~~~r~~il~~~~~~~~-~~l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 242 LVKRLYIPLPEASARKQIVINLMSKEQ-CCLSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CCEEEECCCCCHHHHHHHHHHHHHTSC-BCCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CceEEEeCCcCHHHHHHHHHHHHhhcC-CCccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 46788999999999999988773211 111244567888888884 44555443
No 184
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.12 E-value=1.2e-06 Score=82.75 Aligned_cols=112 Identities=15% Similarity=0.115 Sum_probs=80.3
Q ss_pred hhhcCCCCceEEEEecc-ccc-----cCCcccccCCCccEEEecCcccccc------ccccccCcccEEeCCCCCCcc--
Q 002939 358 NIFMGMPKLKVLLFIRM-RLL-----SLPSSIRLLTDLRTLCLDGCKLEDI------RIIGELKELEILSLQGCDIEH-- 423 (864)
Q Consensus 358 ~~~~~l~~Lr~L~L~~~-~i~-----~lp~~~~~l~~L~~L~L~~~~l~~l------~~~~~l~~L~~L~l~~~~i~~-- 423 (864)
.++...+.|++|+|++| .+. .+...+...++|++|+|++|.+.+- ..+...++|++|+|++|.|..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34567888888888888 765 3455566778899999999888752 345566789999999988873
Q ss_pred ---Cchhhccccccceecc--cccccccccC----hhhhhcCcccceeeccccccc
Q 002939 424 ---LPREIGQLTQLKLLDL--SYCFELKVIA----PNVLSNLSQLEELYMATCCIK 470 (864)
Q Consensus 424 ---lp~~~~~l~~L~~L~l--~~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~~ 470 (864)
+...+...++|++|++ ++|. +..-. ...+...++|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4566777788999999 6675 54321 223555678888888888754
No 185
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.11 E-value=7.8e-06 Score=90.93 Aligned_cols=179 Identities=14% Similarity=0.074 Sum_probs=97.9
Q ss_pred hHHHHHHHhcC-----------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHH
Q 002939 3 TLKNVQNALLD-----------------PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQG 65 (864)
Q Consensus 3 ~~~~i~~~l~~-----------------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~ 65 (864)
+++++.+|+.. ...+.+.|+|++|+||||+|+.+++... ..++.++++.......+ .
T Consensus 47 ~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~-----~~~i~in~s~~~~~~~~-~ 120 (516)
T 1sxj_A 47 SVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG-----YDILEQNASDVRSKTLL-N 120 (516)
T ss_dssp HHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT-----CEEEEECTTSCCCHHHH-H
T ss_pred HHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC-----CCEEEEeCCCcchHHHH-H
Confidence 46777777764 1347999999999999999999998873 13566777665554322 1
Q ss_pred HHHHHhCCccccchhhhhccccccCCCChhhHHHHHHHH-HhcCCeEEEEEcCCCchhc-----cccccCCCCCCCCCcE
Q 002939 66 ELADQLGMKFSQGEIADQRGMKFSQESDVPGRARKLYAR-LQKENKILVILDNIWEDLD-----LEKVGVPSGNDWRGCK 139 (864)
Q Consensus 66 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~LlvlDdv~~~~~-----~~~l~~~~~~~~~gs~ 139 (864)
........... .........+. ...+++.+||+|+++.... +..+...+.. .+..
T Consensus 121 ~~i~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~ 181 (516)
T 1sxj_A 121 AGVKNALDNMS-----------------VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTP 181 (516)
T ss_dssp HTGGGGTTBCC-----------------STTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSC
T ss_pred HHHHHHhcccc-----------------HHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCC
Confidence 11111110000 00000000000 1135778999999975421 1222211111 1234
Q ss_pred EEEEeCChH---HHhhcC-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcc-hHHHHHH
Q 002939 140 VLLTARDRH---VLGSIG-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLP-IAIVTLA 207 (864)
Q Consensus 140 IivTtR~~~---v~~~~~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-la~~~~~ 207 (864)
||+++.... +..... ...+++++++.++..+++...+...... -.++....|++.++|.+ .++..+.
T Consensus 182 iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~-i~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 182 LILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK-LDPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-CCTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred EEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 666555432 222222 5678999999999999988766210000 11234568889998854 4555443
No 186
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.10 E-value=5.3e-05 Score=79.69 Aligned_cols=154 Identities=19% Similarity=0.207 Sum_probs=88.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPG 96 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (864)
+-|.|+|++|+|||++|+.+++..... .+.++++. + .... ......
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~-----~~~v~~~~------l----~~~~-------------------~g~~~~ 130 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSSD------L----VSKW-------------------MGESEK 130 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEEEHHH------H----HSCC----------------------CHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEeeHHH------H----hhhh-------------------cchHHH
Confidence 568999999999999999999987432 34444331 1 1000 001122
Q ss_pred HHHHHHHHHhcCCeEEEEEcCCCchhc-------------cccccCCC---CCCCCCcEEEEEeCChH-----HHhhcCC
Q 002939 97 RARKLYARLQKENKILVILDNIWEDLD-------------LEKVGVPS---GNDWRGCKVLLTARDRH-----VLGSIGS 155 (864)
Q Consensus 97 ~~~~~~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~~---~~~~~gs~IivTtR~~~-----v~~~~~~ 155 (864)
....+.......+..+|+||+++.... ...+...+ .....+..||.||.... +..++ .
T Consensus 131 ~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf-~ 209 (355)
T 2qp9_X 131 LVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRF-E 209 (355)
T ss_dssp HHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTC-C
T ss_pred HHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHccc-C
Confidence 334444444446788999999975421 11111111 11123456666776442 22222 4
Q ss_pred ceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCc-chHHHHH
Q 002939 156 KTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGL-PIAIVTL 206 (864)
Q Consensus 156 ~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pla~~~~ 206 (864)
..+.+...+.++..+++..++...... ..+.....|++.+.|+ +-.+..+
T Consensus 210 ~~i~i~~P~~~~r~~il~~~l~~~~~~-~~~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 210 RRIYIPLPDLAARTTMFEINVGDTPSV-LTKEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCBC-CCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEeCCcCHHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 778899999999999999887432211 1234556888888884 4344433
No 187
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.08 E-value=1.8e-05 Score=85.50 Aligned_cols=162 Identities=14% Similarity=0.149 Sum_probs=93.7
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhc
Q 002939 5 KNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQR 84 (864)
Q Consensus 5 ~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 84 (864)
+.+...+...+.+.+.|+|++|+||||+|+.+++..... .+.+.+.. ....++
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~-----f~~l~a~~-~~~~~i--------------------- 91 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD-----VERISAVT-SGVKEI--------------------- 91 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE-----EEEEETTT-CCHHHH---------------------
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC-----eEEEEecc-CCHHHH---------------------
Confidence 345566666777889999999999999999999886432 22233221 112211
Q ss_pred cccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEE-EeCChH--HHh-hcC-Cce
Q 002939 85 GMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLL-TARDRH--VLG-SIG-SKT 157 (864)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~Iiv-TtR~~~--v~~-~~~-~~~ 157 (864)
.............+++.+|++|+++... ..+.+...+..+ ...+|. ||.+.. +.. ... ..+
T Consensus 92 ----------r~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~sR~~v 159 (447)
T 3pvs_A 92 ----------REAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALLSRARV 159 (447)
T ss_dssp ----------HHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHHTTEEE
T ss_pred ----------HHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHhCceeE
Confidence 1111122222224678999999997652 333343333221 234444 444432 111 112 468
Q ss_pred EEcCCCCHHHHHHHHHHhhCCC------CCCCcchHHHHHHHHhcCCcchHHHH
Q 002939 158 FQIDVLNEEEAWTLFKKMTGDC------AEKGELNFVAIDITKECGGLPIAIVT 205 (864)
Q Consensus 158 ~~l~~L~~~e~~~l~~~~~~~~------~~~~~~~~~~~~i~~~~~g~Pla~~~ 205 (864)
+.+++++.++...++.+.+... ....-.++....+++.++|.+-.+..
T Consensus 160 ~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 160 YLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp EECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 8999999999999999887321 11112345667888889998875543
No 188
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=7.7e-05 Score=77.80 Aligned_cols=150 Identities=12% Similarity=0.162 Sum_probs=90.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
..+-|.++|++|+|||.+|+++++..... .+.+..+.-.+. . ....
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~sk--------------~---------------vGes 226 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAELVQK--------------Y---------------IGEG 226 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGGGSCS--------------S---------------TTHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHHhhcc--------------c---------------cchH
Confidence 45789999999999999999999987653 455555432110 0 0112
Q ss_pred hhHHHHHHHHHhcCCeEEEEEcCCCchhc----------------cccccCCCC--CCCCCcEEEEEeCChHHHh----h
Q 002939 95 PGRARKLYARLQKENKILVILDNIWEDLD----------------LEKVGVPSG--NDWRGCKVLLTARDRHVLG----S 152 (864)
Q Consensus 95 ~~~~~~~~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs~IivTtR~~~v~~----~ 152 (864)
...+..++...+....++|++|+++.... ...+...+. ....+..||.||......+ +
T Consensus 227 e~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllR 306 (405)
T 4b4t_J 227 SRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLR 306 (405)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHS
T ss_pred HHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcC
Confidence 23344555555557889999999874310 111111111 1223445666776543322 2
Q ss_pred c-C-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcc
Q 002939 153 I-G-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLP 200 (864)
Q Consensus 153 ~-~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 200 (864)
. + ...+.++.-+.++..++|+.+........+.+ ..++++.+.|+-
T Consensus 307 pGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd--l~~lA~~t~G~S 354 (405)
T 4b4t_J 307 PGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN--LRKVAEKMNGCS 354 (405)
T ss_dssp TTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC--HHHHHHHCCSCC
T ss_pred CCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC--HHHHHHHCCCCC
Confidence 2 2 68899999999999999988874432222221 346788887753
No 189
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.04 E-value=2e-05 Score=82.24 Aligned_cols=164 Identities=12% Similarity=0.126 Sum_probs=93.5
Q ss_pred hHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 3 TLKNVQNALLDPDI-SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 3 ~~~~i~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.++.+.+++...+. .++.+.|++|+|||++|+.+++.... .+++++++... ...+ ++.+...
T Consensus 34 ~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~~~-~~~i-~~~~~~~---------- 96 (324)
T 3u61_B 34 DKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSDCK-IDFV-RGPLTNF---------- 96 (324)
T ss_dssp HHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTTCC-HHHH-HTHHHHH----------
T ss_pred HHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEcccccC-HHHH-HHHHHHH----------
Confidence 45677788876554 57788888999999999999987642 25666655432 2221 1111111
Q ss_pred hhccccccCCCChhhHHHHHHHHH-hcCCeEEEEEcCCCchh---ccccccCCCCCCCCCcEEEEEeCChHHH-hhcC--
Q 002939 82 DQRGMKFSQESDVPGRARKLYARL-QKENKILVILDNIWEDL---DLEKVGVPSGNDWRGCKVLLTARDRHVL-GSIG-- 154 (864)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~LlvlDdv~~~~---~~~~l~~~~~~~~~gs~IivTtR~~~v~-~~~~-- 154 (864)
.... ..+++-++|+||++... ..+.+...+.....+.++|+||....-. ....
T Consensus 97 --------------------~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 97 --------------------ASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp --------------------HHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred --------------------HhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 0000 01478899999998654 2333322222112345888888765321 1111
Q ss_pred CceEEcCCCCHHHHHHHHHH-------hhCCCCCCCcch-HHHHHHHHhcCCcchHHH
Q 002939 155 SKTFQIDVLNEEEAWTLFKK-------MTGDCAEKGELN-FVAIDITKECGGLPIAIV 204 (864)
Q Consensus 155 ~~~~~l~~L~~~e~~~l~~~-------~~~~~~~~~~~~-~~~~~i~~~~~g~Pla~~ 204 (864)
...+++++.+.++..+++.. .+.... ..-.+ +....+++.++|.+..+.
T Consensus 157 ~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~-~~~~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 157 CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEG-IAIADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHT-CCBSCHHHHHHHHHHTCSCTTHHH
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHhCCCCHHHHH
Confidence 46799999998885443322 221101 11112 566788899988777443
No 190
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.02 E-value=6.4e-05 Score=80.46 Aligned_cols=156 Identities=15% Similarity=0.124 Sum_probs=87.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
.+.|.|+|++|+|||++|+.+++.... .++.++++...... . ....
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~~~~---------~--------------------g~~~ 193 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLTSKY---------V--------------------GEGE 193 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC------------------------------------CH
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhhccc---------c--------------------chHH
Confidence 468999999999999999999887532 24555554322100 0 0111
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCchhc-------------cccccCCC---CC-CCCCcEEEEEeCChHHHh--hc-C-
Q 002939 96 GRARKLYARLQKENKILVILDNIWEDLD-------------LEKVGVPS---GN-DWRGCKVLLTARDRHVLG--SI-G- 154 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~~---~~-~~~gs~IivTtR~~~v~~--~~-~- 154 (864)
.....+.......+..+|+||+++.... ...+...+ .. ......||.||....... .. +
T Consensus 194 ~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~ 273 (389)
T 3vfd_A 194 KLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRF 273 (389)
T ss_dssp HHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTC
T ss_pred HHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCc
Confidence 2233344444445667999999965410 01111100 00 112345666666532211 11 2
Q ss_pred CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcch-HHHHH
Q 002939 155 SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPI-AIVTL 206 (864)
Q Consensus 155 ~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-a~~~~ 206 (864)
...+.+...+.++..+++...+..... .-.+.....+++.+.|+.- ++..+
T Consensus 274 ~~~i~i~~p~~~~r~~il~~~~~~~~~-~l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 274 IKRVYVSLPNEETRLLLLKNLLCKQGS-PLTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHTTSCC-CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred ceEEEcCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 357889999999999999988743211 1223456788899888655 45444
No 191
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.01 E-value=3e-05 Score=80.91 Aligned_cols=161 Identities=15% Similarity=0.144 Sum_probs=91.9
Q ss_pred HHHHHhcCC--CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhh
Q 002939 6 NVQNALLDP--DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQ 83 (864)
Q Consensus 6 ~i~~~l~~~--~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 83 (864)
.+..++... ..+.+.|+|++|+||||+|+.+++..... -..++++++.. +...+...+..
T Consensus 25 ~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~~------~~~~~~~~~~~---------- 86 (324)
T 1l8q_A 25 VVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSADD------FAQAMVEHLKK---------- 86 (324)
T ss_dssp HHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHHH------HHHHHHHHHHH----------
T ss_pred HHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHHH------HHHHHHHHHHc----------
Confidence 344455443 34689999999999999999999987543 12356776532 33333333310
Q ss_pred ccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchhc----cccccCCCCC-CCCCcEEEEEeCChH---------H
Q 002939 84 RGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDLD----LEKVGVPSGN-DWRGCKVLLTARDRH---------V 149 (864)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~----~~~l~~~~~~-~~~gs~IivTtR~~~---------v 149 (864)
.....+.+... +.-+|++||++.... .+.+...+.. ...|.+||+||.... +
T Consensus 87 ------------~~~~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L 152 (324)
T 1l8q_A 87 ------------GTINEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRL 152 (324)
T ss_dssp ------------TCHHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHH
T ss_pred ------------CcHHHHHHHhc--CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHh
Confidence 01112233332 466999999965431 1122111110 113557888886431 2
Q ss_pred HhhcC-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcch
Q 002939 150 LGSIG-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPI 201 (864)
Q Consensus 150 ~~~~~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 201 (864)
...+. ...+++++ +.++..+++...+.... ..-.++....+++.+ |..-
T Consensus 153 ~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~-~~l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 153 VSRFEGGILVEIEL-DNKTRFKIIKEKLKEFN-LELRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHTSEEEECCC-CHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHC-SSHH
T ss_pred hhcccCceEEEeCC-CHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHhC-CCHH
Confidence 22222 36789999 99999999998772111 111244566777777 7654
No 192
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.00 E-value=2.4e-05 Score=82.20 Aligned_cols=169 Identities=13% Similarity=0.087 Sum_probs=94.4
Q ss_pred hHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhh
Q 002939 3 TLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIAD 82 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 82 (864)
.++.+..++..++.+.+.++|++|+||||+|+.++........-..+..++.+.......+ ++.+..+
T Consensus 33 ~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~i-r~~i~~~----------- 100 (340)
T 1sxj_C 33 VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVV-RNQIKDF----------- 100 (340)
T ss_dssp HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHH-HTHHHHH-----------
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHH-HHHHHHH-----------
Confidence 4556667777766656999999999999999999998653210011333333332222211 1111111
Q ss_pred hccccccCCCChhhHHHHHHHHH--hcCCeEEEEEcCCCchh--ccccccCCCCCCCCCcEEEEEeCChH-HHhh-cC-C
Q 002939 83 QRGMKFSQESDVPGRARKLYARL--QKENKILVILDNIWEDL--DLEKVGVPSGNDWRGCKVLLTARDRH-VLGS-IG-S 155 (864)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~IivTtR~~~-v~~~-~~-~ 155 (864)
.+.. ..+++-++|+|+++... ..+.+...+.......++|++|.... +... .. .
T Consensus 101 -------------------~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 101 -------------------ASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp -------------------HHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred -------------------HhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 0000 01346789999986532 22223222211223557777776542 1111 11 4
Q ss_pred ceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHH
Q 002939 156 KTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAI 203 (864)
Q Consensus 156 ~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~ 203 (864)
..+++.+++.++..+.+.+.+.... ..-.++....+++.++|.+..+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~-~~i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEK-LKLSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTT-CCBCHHHHHHHHHHHTTCHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 6789999999999998887762111 1112345667888889987643
No 193
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.00 E-value=0.00011 Score=79.10 Aligned_cols=307 Identities=14% Similarity=0.187 Sum_probs=165.3
Q ss_pred cCCCCCC--cCC-CceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccc---cccC-CcccccCCCccEEEecCccccc
Q 002939 329 SEIPQGW--ECP-QLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMR---LLSL-PSSIRLLTDLRTLCLDGCKLED 401 (864)
Q Consensus 329 ~~~~~~~--~~~-~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~---i~~l-p~~~~~l~~L~~L~L~~~~l~~ 401 (864)
+.+.... .+. .|+.+.+.. ....+...+|.++.+|+.+.+..+. ++.+ ...|.++.+|+.+.+..+ ++.
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~---svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPD---TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECT---TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred eEcCHhhccCCCCcCEEEEECC---CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence 3444443 343 477777743 2335777888888888888887763 5555 345777888887766543 444
Q ss_pred c--ccccccCcccEEeCCCCCCccC-chhhccccccceecccccccccccChhhhhcCcccceeecccccc---cccccc
Q 002939 402 I--RIIGELKELEILSLQGCDIEHL-PREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCI---KWEISN 475 (864)
Q Consensus 402 l--~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~---~~~~~~ 475 (864)
+ ..+..+.+|+.+.+..+ +..+ ...+..+.+|+.+.+..+ +..+....+.. .+|+.+.+..+.. ...+.+
T Consensus 128 I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~ 203 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSE 203 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTT
T ss_pred ehhhhhhhhcccccccccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECCcccccccchhhh
Confidence 4 45777888888888654 3433 334567778888877654 56666655543 5677777654321 123556
Q ss_pred CCcchhhhcCCCCccCCCCcc-------------Cc---ccceecccccccccccccccccccCCCcceEEEeeCCCccc
Q 002939 476 CSLLEEIVGKEGGVEADPSFV-------------FP---RLTILQLCYLPELRAFYPGIHTLECPMLTKLKVSCCDKLKC 539 (864)
Q Consensus 476 ~~~L~~L~~~~~~~~~~~~~~-------------~~---~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 539 (864)
|..+................. ++ .+....+. ..+..+ ....+..+..|+.+.+... +..
T Consensus 204 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip--~~v~~i-~~~aF~~c~~L~~i~lp~~--~~~ 278 (394)
T 4gt6_A 204 CFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP--NGVARI-ETHAFDSCAYLASVKMPDS--VVS 278 (394)
T ss_dssp CTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC--TTEEEE-CTTTTTTCSSCCEEECCTT--CCE
T ss_pred ccccceecccccccccccceeecccccccccccccccccccceEEcC--CcceEc-ccceeeecccccEEecccc--cce
Confidence 666655433332221111110 01 11111110 011111 1122345666776665321 111
Q ss_pred ccccccccccccccCcccccCCCccccccchhhhcCCcceeecccccccccccccccCcccccCccEEEeecCCccccch
Q 002939 540 FSSELYSLHENNEEGQLIDVPVPAQQSLFLVEKVLPNLEELRLSNKKDITKIWQGQFPDHLLNKLKVLAIENDKSEVLAP 619 (864)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~p~~~~~~L~~L~l~~~~~~~~~~ 619 (864)
+.. ..+..+++|+.+.+... +..+....|. .+.+|+.+.+..+ ++.+..
T Consensus 279 I~~--------------------------~aF~~c~~L~~i~l~~~--i~~I~~~aF~--~c~~L~~i~lp~~-v~~I~~ 327 (394)
T 4gt6_A 279 IGT--------------------------GAFMNCPALQDIEFSSR--ITELPESVFA--GCISLKSIDIPEG-ITQILD 327 (394)
T ss_dssp ECT--------------------------TTTTTCTTCCEEECCTT--CCEECTTTTT--TCTTCCEEECCTT-CCEECT
T ss_pred ecC--------------------------cccccccccccccCCCc--ccccCceeec--CCCCcCEEEeCCc-ccEehH
Confidence 111 11223677888877543 2222222222 2678888888653 566667
Q ss_pred hHHHHcccccEEEEEccccccccccccchhhhcccccccceeecCCCcCccccccccccccccccccCccEEEeec
Q 002939 620 DLLERFHNLVNLELADGSYKELFSNEGQVEKLVGKLARIKCLQLSGLNDLKHLWLWEENSKLNMIFQNLETLDISF 695 (864)
Q Consensus 620 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~ 695 (864)
..|.+|.+|+.+.|.. .++.+. ...+.+|++|+.+.+.+.. ..+ .......+|+.+.+..
T Consensus 328 ~aF~~C~~L~~i~ip~-sv~~I~------~~aF~~C~~L~~i~~~~~~--~~~-------~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPS-SVTKIP------ESAFSNCTALNNIEYSGSR--SQW-------NAISTDSGLQNLPVAP 387 (394)
T ss_dssp TTTTTCTTCCEEEECT-TCCBCC------GGGGTTCTTCCEEEESSCH--HHH-------HTCBCCCCC-------
T ss_pred hHhhCCCCCCEEEECc-ccCEEh------HhHhhCCCCCCEEEECCce--eeh-------hhhhccCCCCEEEeCC
Confidence 7788899999998863 354432 3457889999999988732 111 1123456777777654
No 194
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.98 E-value=2.5e-05 Score=80.96 Aligned_cols=129 Identities=14% Similarity=0.149 Sum_probs=74.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCC--eEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFD--EVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQES 92 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~--~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 92 (864)
....+.|+|++|+|||++|+.+++......... .++.++.+.-. ... ..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~--------------~~~---------------~g 116 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV--------------GQY---------------IG 116 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC--------------CSS---------------TT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh--------------hhc---------------cc
Confidence 345799999999999999999998875432221 23444322110 000 00
Q ss_pred ChhhHHHHHHHHHhcCCeEEEEEcCCCch-----------hccccccCCCCCCCCCcEEEEEeCChHH----------Hh
Q 002939 93 DVPGRARKLYARLQKENKILVILDNIWED-----------LDLEKVGVPSGNDWRGCKVLLTARDRHV----------LG 151 (864)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~LlvlDdv~~~-----------~~~~~l~~~~~~~~~gs~IivTtR~~~v----------~~ 151 (864)
........+.+.. +.-+|++|+++.. .....+...+.....+..||.||..... ..
T Consensus 117 ~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~ 193 (309)
T 3syl_A 117 HTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRS 193 (309)
T ss_dssp CHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHH
T ss_pred ccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHH
Confidence 1111122222222 3349999999743 1223333222223345678888864322 11
Q ss_pred hcCCceEEcCCCCHHHHHHHHHHhh
Q 002939 152 SIGSKTFQIDVLNEEEAWTLFKKMT 176 (864)
Q Consensus 152 ~~~~~~~~l~~L~~~e~~~l~~~~~ 176 (864)
++ ...+.+++++.++..+++.+++
T Consensus 194 R~-~~~i~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 194 RI-AHHIEFPDYSDEELFEIAGHML 217 (309)
T ss_dssp HE-EEEEEECCCCHHHHHHHHHHHH
T ss_pred hC-CeEEEcCCcCHHHHHHHHHHHH
Confidence 22 3788999999999999998877
No 195
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.97 E-value=0.00019 Score=73.69 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=88.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
.+.+.|+|++|+||||+|+.+++.... ..+.++++..... . .....
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l~~~--------------~---------------~~~~~ 99 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASLTSK--------------Y---------------VGDGE 99 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTTSSS--------------S---------------CSCHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHHhhc--------------c---------------cchHH
Confidence 468999999999999999999987642 2345555432110 0 01112
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCchhcc-------------cccc---CCCCC--CCCCcEEEEEeCChH-----HHhh
Q 002939 96 GRARKLYARLQKENKILVILDNIWEDLDL-------------EKVG---VPSGN--DWRGCKVLLTARDRH-----VLGS 152 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~~~~~-------------~~l~---~~~~~--~~~gs~IivTtR~~~-----v~~~ 152 (864)
.....+.......+..+|++|+++....- ..+. ..... ...+..||.||.... +...
T Consensus 100 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R 179 (297)
T 3b9p_A 100 KLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRR 179 (297)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhh
Confidence 23333344444467789999999654110 0011 00111 112446677776543 2223
Q ss_pred cCCceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcch-HHHHH
Q 002939 153 IGSKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPI-AIVTL 206 (864)
Q Consensus 153 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-a~~~~ 206 (864)
+ ...+.++..+.++..+++...+..... .-.+.....+++.+.|++- ++..+
T Consensus 180 ~-~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 180 F-TKRVYVSLPDEQTRELLLNRLLQKQGS-PLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp C-CEEEECCCCCHHHHHHHHHHHHGGGSC-CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred C-CeEEEeCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 3 367788888888888888877632111 1123456688899999875 55444
No 196
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.97 E-value=0.00014 Score=79.02 Aligned_cols=157 Identities=18% Similarity=0.175 Sum_probs=88.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
.+.|.|+|++|+|||++|+.+++.... ...+.++++.... . ..+. ..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~----~~~~~v~~~~l~~------~---~~g~--------------------~~ 213 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDLVS------K---WLGE--------------------SE 213 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCS----SEEEEECCC--------------------------------------CC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCC----CCEEEEeHHHHHh------h---hcch--------------------HH
Confidence 478999999999999999999998621 1233444332110 0 0110 01
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCchhc-------------cccccCCCCC---CCCCcEEEEEeCChHHHh--hc-C-C
Q 002939 96 GRARKLYARLQKENKILVILDNIWEDLD-------------LEKVGVPSGN---DWRGCKVLLTARDRHVLG--SI-G-S 155 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~~---~~~gs~IivTtR~~~v~~--~~-~-~ 155 (864)
.....+.+.....+..+|+||+++.... ...+...+.. ...+..||.||....... .. + .
T Consensus 214 ~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~ 293 (444)
T 2zan_A 214 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFE 293 (444)
T ss_dssp CTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcc
Confidence 1223344444446778999999975410 1122222221 223556777776543221 11 2 4
Q ss_pred ceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCc-chHHHHH
Q 002939 156 KTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGL-PIAIVTL 206 (864)
Q Consensus 156 ~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pla~~~~ 206 (864)
..+.+...+.++..+++..++...... ..+.....+++.+.|+ +-.+..+
T Consensus 294 ~~i~i~~P~~~~r~~il~~~l~~~~~~-l~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 294 KRIYIPLPEAHARAAMFRLHLGSTQNS-LTEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCEE-CCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 678888889999999999887432211 1234556888888885 3344433
No 197
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.96 E-value=2.3e-06 Score=84.89 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=43.5
Q ss_pred ccCCCccEEEecCcccccccc----ccccCcccEEeCCCCCCccCchhhcccc--ccceecccccccccccC------hh
Q 002939 384 RLLTDLRTLCLDGCKLEDIRI----IGELKELEILSLQGCDIEHLPREIGQLT--QLKLLDLSYCFELKVIA------PN 451 (864)
Q Consensus 384 ~~l~~L~~L~L~~~~l~~l~~----~~~l~~L~~L~l~~~~i~~lp~~~~~l~--~L~~L~l~~~~~l~~~~------~~ 451 (864)
.++++|+.|+|++|.+++++. +..+++|++|+|++|++..+. .+..+. +|++|++++|.....+| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 345566666666666655432 335666666666666666542 233343 66666666665222222 12
Q ss_pred hhhcCcccceee
Q 002939 452 VLSNLSQLEELY 463 (864)
Q Consensus 452 ~l~~l~~L~~L~ 463 (864)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356667777766
No 198
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.96 E-value=5.5e-05 Score=77.68 Aligned_cols=152 Identities=12% Similarity=0.182 Sum_probs=86.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
..+.|.|+|++|+|||++|+.+++.... ..+.++++ ++... ..+. .
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~-----~~i~v~~~------~l~~~---~~g~-------------------~- 93 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIKGP------ELLTM---WFGE-------------------S- 93 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTC-----EEEEECHH------HHHHH---HHTT-------------------C-
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCC-----CEEEEEhH------HHHhh---hcCc-------------------h-
Confidence 4568999999999999999999987642 23344322 22111 1111 1
Q ss_pred hhHHHHHHHHHhcCCeEEEEEcCCCchhc----------------cccccCCCC--CCCCCcEEEEEeCChHHHh----h
Q 002939 95 PGRARKLYARLQKENKILVILDNIWEDLD----------------LEKVGVPSG--NDWRGCKVLLTARDRHVLG----S 152 (864)
Q Consensus 95 ~~~~~~~~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs~IivTtR~~~v~~----~ 152 (864)
......+.+........++++|+++.... ...+...+. ....+..||.||....... .
T Consensus 94 ~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r 173 (301)
T 3cf0_A 94 EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILR 173 (301)
T ss_dssp TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGS
T ss_pred HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhc
Confidence 11223344444346778999999975311 111111111 1123457777776553222 1
Q ss_pred c-C-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchH
Q 002939 153 I-G-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIA 202 (864)
Q Consensus 153 ~-~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 202 (864)
. + ...+.++..+.++..+++..+........+.. ...+++.+.|+|-+
T Consensus 174 ~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~--~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 174 PGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD--LEFLAKMTNGFSGA 223 (301)
T ss_dssp TTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHTCSSCCHH
T ss_pred CCccceEEecCCcCHHHHHHHHHHHHccCCCCccch--HHHHHHHcCCCCHH
Confidence 1 2 46789999999999999988874322111111 23566777777643
No 199
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=0.00013 Score=77.48 Aligned_cols=150 Identities=20% Similarity=0.297 Sum_probs=89.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
..+-|.++|++|+|||++|+++++..... .+.+..+.-.+. . ....
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~sk--------------~---------------~Ges 259 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIVDK--------------Y---------------IGES 259 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCCS--------------S---------------SSHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhccc--------------c---------------chHH
Confidence 45799999999999999999999987643 455555443210 0 0111
Q ss_pred hhHHHHHHHHHhcCCeEEEEEcCCCchhc----------------cccccCCCC--CCCCCcEEEEEeCChHHHh----h
Q 002939 95 PGRARKLYARLQKENKILVILDNIWEDLD----------------LEKVGVPSG--NDWRGCKVLLTARDRHVLG----S 152 (864)
Q Consensus 95 ~~~~~~~~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs~IivTtR~~~v~~----~ 152 (864)
......++.........+|++|+++.... +..+...+. ....+..||.||......+ +
T Consensus 260 e~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllR 339 (437)
T 4b4t_L 260 ARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLR 339 (437)
T ss_dssp HHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTS
T ss_pred HHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhC
Confidence 22344445555557889999999974310 111111111 1223456777776554332 1
Q ss_pred cC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcc
Q 002939 153 IG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLP 200 (864)
Q Consensus 153 ~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 200 (864)
.+ ...+.++.-+.++..++|+.+........+.+ ...+++.+.|+-
T Consensus 340 pGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d--l~~lA~~t~G~s 387 (437)
T 4b4t_L 340 PGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD--FEAAVKMSDGFN 387 (437)
T ss_dssp TTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC--HHHHHHTCCSCC
T ss_pred CCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC--HHHHHHhCCCCC
Confidence 22 56788888888888999988773322222221 346788887753
No 200
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.92 E-value=3.8e-05 Score=78.35 Aligned_cols=143 Identities=16% Similarity=0.086 Sum_probs=89.9
Q ss_pred chHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhh-hc-cCCCeEEEEEccC-CCChHHHHHHHHHHhCCccccc
Q 002939 2 STLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAK-KD-MLFDEVVFAEVSE-TPDIGKIQGELADQLGMKFSQG 78 (864)
Q Consensus 2 ~~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~-~~-~~f~~~~~v~~~~-~~~~~~~~~~i~~~l~~~~~~~ 78 (864)
..++.+...+.+++.+...++|+.|+||||+|+.+++... .. .+.+ +.+++.+. ...+.++ +++.+.+.....
T Consensus 4 ~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p~-- 79 (305)
T 2gno_A 4 DQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSPE-- 79 (305)
T ss_dssp CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCCS--
T ss_pred HHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhccc--
Confidence 4567788888877778999999999999999999987521 11 1233 34555432 2222222 333333321100
Q ss_pred hhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEeCChH-HHhhcCC
Q 002939 79 EIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTARDRH-VLGSIGS 155 (864)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~~~-v~~~~~~ 155 (864)
.+++-++|+|+++.. ...+.+...+......+.+|++|.++. +......
T Consensus 80 ----------------------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~S 131 (305)
T 2gno_A 80 ----------------------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKS 131 (305)
T ss_dssp ----------------------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHT
T ss_pred ----------------------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHc
Confidence 246779999999765 234445444433344677777776553 3333332
Q ss_pred ceEEcCCCCHHHHHHHHHHhh
Q 002939 156 KTFQIDVLNEEEAWTLFKKMT 176 (864)
Q Consensus 156 ~~~~l~~L~~~e~~~l~~~~~ 176 (864)
+.++++++++++..+++.+..
T Consensus 132 R~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 132 RVFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp TSEEEECCCCHHHHHHHHHHH
T ss_pred eeEeCCCCCHHHHHHHHHHHh
Confidence 299999999999999998876
No 201
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.91 E-value=1.9e-05 Score=83.73 Aligned_cols=99 Identities=7% Similarity=0.034 Sum_probs=59.3
Q ss_pred CCeEEEEEcCCCchhc--cccccCCCCCCCCCcEEEEEeCChH-HHhhc-C-CceEEcCCCCHHHHHHHHHHhhCCCCCC
Q 002939 108 ENKILVILDNIWEDLD--LEKVGVPSGNDWRGCKVLLTARDRH-VLGSI-G-SKTFQIDVLNEEEAWTLFKKMTGDCAEK 182 (864)
Q Consensus 108 ~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~IivTtR~~~-v~~~~-~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~ 182 (864)
+++-++|+|+++..+. .+.+...+.....+.++|++|.+.. +.... . ...+++++++.++..+++...+.... .
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 211 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNER-I 211 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-C
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcC-C
Confidence 3566999999976421 2222222211223567888776532 22211 2 47899999999999999988762111 1
Q ss_pred Ccc-hHHHHHHHHhcCCcchHHHHHH
Q 002939 183 GEL-NFVAIDITKECGGLPIAIVTLA 207 (864)
Q Consensus 183 ~~~-~~~~~~i~~~~~g~Pla~~~~~ 207 (864)
.-. ++....|++.++|.+-.+..+.
T Consensus 212 ~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 212 QLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 111 3456788999999887554433
No 202
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.86 E-value=1.4e-05 Score=79.36 Aligned_cols=79 Identities=28% Similarity=0.343 Sum_probs=65.8
Q ss_pred cCCCCceEEEEeccccccC---CcccccCCCccEEEecCccccccccccccC--cccEEeCCCCCCc-cCc-------hh
Q 002939 361 MGMPKLKVLLFIRMRLLSL---PSSIRLLTDLRTLCLDGCKLEDIRIIGELK--ELEILSLQGCDIE-HLP-------RE 427 (864)
Q Consensus 361 ~~l~~Lr~L~L~~~~i~~l---p~~~~~l~~L~~L~L~~~~l~~l~~~~~l~--~L~~L~l~~~~i~-~lp-------~~ 427 (864)
.++++|++|+|++|.+..+ |..+..+++|++|+|++|.++++..+..+. +|++|+|++|.+. .+| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 5688999999999998865 466779999999999999999886666666 9999999999987 454 24
Q ss_pred hccccccceecc
Q 002939 428 IGQLTQLKLLDL 439 (864)
Q Consensus 428 ~~~l~~L~~L~l 439 (864)
+..+++|+.||=
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 678999999974
No 203
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.86 E-value=0.00027 Score=74.16 Aligned_cols=160 Identities=16% Similarity=0.159 Sum_probs=89.1
Q ss_pred HHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccc
Q 002939 4 LKNVQNALL-----DPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQG 78 (864)
Q Consensus 4 ~~~i~~~l~-----~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~ 78 (864)
++++..++. ....+.|.|+|++|+|||++|+.+++..... .+.+++........+..
T Consensus 38 ~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~-----~~~~~~~~~~~~~~~~~------------- 99 (338)
T 3pfi_A 38 KKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN-----IKTTAAPMIEKSGDLAA------------- 99 (338)
T ss_dssp HHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC-----EEEEEGGGCCSHHHHHH-------------
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEecchhccchhHHHH-------------
Confidence 445555554 2344678999999999999999998875322 34455443322211111
Q ss_pred hhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchh--ccccccCCC------------------CCCCCCc
Q 002939 79 EIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDL--DLEKVGVPS------------------GNDWRGC 138 (864)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~------------------~~~~~gs 138 (864)
.... ..+..+|++|+++... ....+...+ ....++.
T Consensus 100 ----------------------~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 100 ----------------------ILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp ----------------------HHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred ----------------------HHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 1111 1345567777775431 111110000 0001134
Q ss_pred EEEEEeCChHHHh--hc-C-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHHH
Q 002939 139 KVLLTARDRHVLG--SI-G-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVTL 206 (864)
Q Consensus 139 ~IivTtR~~~v~~--~~-~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~~ 206 (864)
++|.||....... .. + ...+.+.+++.++..+++.+.+.... ..-..+....+++.+.|.|-.+..+
T Consensus 156 ~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHH
Confidence 6666666533211 11 1 37899999999999999988773211 1122456678888999999655433
No 204
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00018 Score=76.17 Aligned_cols=150 Identities=16% Similarity=0.187 Sum_probs=88.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCC
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESD 93 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 93 (864)
...+-|.++|++|+|||.+|+++++..... .+.+..+.-.+ .. ...
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~s--------------k~---------------vGe 286 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSELVQ--------------KY---------------VGE 286 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGCC--------------CS---------------SSH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHhhc--------------cc---------------CCH
Confidence 346899999999999999999999987653 44555443211 00 011
Q ss_pred hhhHHHHHHHHHhcCCeEEEEEcCCCchhc----------------cccccCCCC--CCCCCcEEEEEeCChHHHh----
Q 002939 94 VPGRARKLYARLQKENKILVILDNIWEDLD----------------LEKVGVPSG--NDWRGCKVLLTARDRHVLG---- 151 (864)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs~IivTtR~~~v~~---- 151 (864)
.......++........++|++|+++.... ...+...+. ....+..||.||-......
T Consensus 287 sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALl 366 (467)
T 4b4t_H 287 GARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALL 366 (467)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHH
T ss_pred HHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhh
Confidence 223344455555557889999999874310 001111111 1122345555665443222
Q ss_pred hc-C-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCc
Q 002939 152 SI-G-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGL 199 (864)
Q Consensus 152 ~~-~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 199 (864)
+. + ...+.+..-+.++..++|+.+........+.+ ...+++.+.|+
T Consensus 367 RpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd--l~~LA~~T~Gf 414 (467)
T 4b4t_H 367 RPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR--WELISRLCPNS 414 (467)
T ss_dssp STTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHHCCSC
T ss_pred ccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHCCCC
Confidence 22 2 67889999999999999988874432222221 34677888775
No 205
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.00022 Score=74.56 Aligned_cols=149 Identities=18% Similarity=0.193 Sum_probs=86.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
..+-|.++|++|+|||.+|+++++..... .+.++.+.-.+ .. ....
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~-----fi~v~~s~l~s--------------k~---------------vGes 260 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSAT-----FLRIVGSELIQ--------------KY---------------LGDG 260 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCE-----EEEEESGGGCC--------------SS---------------SSHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCC-----EEEEEHHHhhh--------------cc---------------CchH
Confidence 35789999999999999999999997653 34444433211 00 1112
Q ss_pred hhHHHHHHHHHhcCCeEEEEEcCCCchhc----------------cccccCCCC--CCCCCcEEEEEeCChHHHh----h
Q 002939 95 PGRARKLYARLQKENKILVILDNIWEDLD----------------LEKVGVPSG--NDWRGCKVLLTARDRHVLG----S 152 (864)
Q Consensus 95 ~~~~~~~~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs~IivTtR~~~v~~----~ 152 (864)
......++.........+|++|+++.... ...+...+. ....+..||.||-.....+ +
T Consensus 261 ek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlR 340 (437)
T 4b4t_I 261 PRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIR 340 (437)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSC
T ss_pred HHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhc
Confidence 23344555555557789999998864310 001111110 1223445666776554433 1
Q ss_pred cC--CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCc
Q 002939 153 IG--SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGL 199 (864)
Q Consensus 153 ~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 199 (864)
.+ ...+.+..-+.++..++|+.+.....-..+.+ ...+++.+.|+
T Consensus 341 pGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd--l~~LA~~T~Gf 387 (437)
T 4b4t_I 341 PGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN--LETLVTTKDDL 387 (437)
T ss_dssp TTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC--HHHHHHHCCSC
T ss_pred CCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCC
Confidence 12 46678888888888999988874332222211 34677777775
No 206
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.00022 Score=75.64 Aligned_cols=149 Identities=17% Similarity=0.221 Sum_probs=82.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
..+-|.++|++|+|||++|+++++..... .+.++.+...+. . ....
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~~~--------------~---------------~Ge~ 250 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFVHK--------------Y---------------LGEG 250 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTCCS--------------S---------------CSHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhhcc--------------c---------------cchh
Confidence 45789999999999999999999987643 455555542210 0 0112
Q ss_pred hhHHHHHHHHHhcCCeEEEEEcCCCchhc----------------cccccCCCC--CCCCCcEEEEEeCChHHHh----h
Q 002939 95 PGRARKLYARLQKENKILVILDNIWEDLD----------------LEKVGVPSG--NDWRGCKVLLTARDRHVLG----S 152 (864)
Q Consensus 95 ~~~~~~~~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs~IivTtR~~~v~~----~ 152 (864)
...+..++.........++++|+++.... ...+...+. ....+..||.||......+ +
T Consensus 251 e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllR 330 (428)
T 4b4t_K 251 PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLR 330 (428)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHS
T ss_pred HHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhc
Confidence 23344455555557789999999853310 111111111 1223446666776543221 2
Q ss_pred c-C-CceEEcCCCC-HHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCc
Q 002939 153 I-G-SKTFQIDVLN-EEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGL 199 (864)
Q Consensus 153 ~-~-~~~~~l~~L~-~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 199 (864)
. + ...+++.++. .++..++|..+.......++.+ ...+++.+.|+
T Consensus 331 pGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d--l~~lA~~t~G~ 378 (428)
T 4b4t_K 331 PGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD--LDSLIIRNDSL 378 (428)
T ss_dssp SSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC--HHHHHHHTTTC
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC--HHHHHHHCCCC
Confidence 2 2 4667887664 5555677777663222112111 34677777775
No 207
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.78 E-value=0.00013 Score=73.11 Aligned_cols=153 Identities=18% Similarity=0.172 Sum_probs=82.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
.+-+.|+|++|+||||+|+.+++..... .+.++.+..... . . .. ..
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~i~~~~~~~~----------~----~--------------~~-~~ 90 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVP-----FFTISGSDFVEM----------F----V--------------GV-GA 90 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCC-----EEEECSCSSTTS----------C----C--------------CC-CH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCC-----EEEEeHHHHHHH----------h----h--------------hh-hH
Confidence 3568999999999999999999876422 344443321110 0 0 01 11
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCchhc----------------cccccCCCC--CCCCCcEEEEEeCChHHHh----hc
Q 002939 96 GRARKLYARLQKENKILVILDNIWEDLD----------------LEKVGVPSG--NDWRGCKVLLTARDRHVLG----SI 153 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs~IivTtR~~~v~~----~~ 153 (864)
.....+.+........++++|+++.... ...+...+. ....+..||.||....... ..
T Consensus 91 ~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~ 170 (257)
T 1lv7_A 91 SRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRP 170 (257)
T ss_dssp HHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGST
T ss_pred HHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCC
Confidence 2233344444445668999999843211 011110000 1123456777776553221 11
Q ss_pred -C-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCC-cchHHH
Q 002939 154 -G-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGG-LPIAIV 204 (864)
Q Consensus 154 -~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pla~~ 204 (864)
. ...+.+...+.++-.+++..+.....-.++. ....+++...| .+--+.
T Consensus 171 ~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~--~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 171 GRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPGFSGADLA 222 (257)
T ss_dssp TSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHHH
T ss_pred CcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc--cHHHHHHHcCCCCHHHHH
Confidence 2 4677888888888888888876432212211 12356777777 555444
No 208
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.00014 Score=77.19 Aligned_cols=149 Identities=13% Similarity=0.165 Sum_probs=85.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
..+-|.++||+|+|||.+|+++++..... .+.+..+.-.+ .. ....
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~~--------------~~---------------vGes 259 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQLVQ--------------MY---------------IGEG 259 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGCS--------------SC---------------SSHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhhhhh--------------cc---------------cchH
Confidence 35789999999999999999999987643 44555443211 00 0111
Q ss_pred hhHHHHHHHHHhcCCeEEEEEcCCCchh------------c----cccccCCCCC--CCCCcEEEEEeCChHHHh----h
Q 002939 95 PGRARKLYARLQKENKILVILDNIWEDL------------D----LEKVGVPSGN--DWRGCKVLLTARDRHVLG----S 152 (864)
Q Consensus 95 ~~~~~~~~~~l~~~~~~LlvlDdv~~~~------------~----~~~l~~~~~~--~~~gs~IivTtR~~~v~~----~ 152 (864)
......++........++|++|+++... . ...+...+.. ...+..||-||......+ +
T Consensus 260 e~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllR 339 (434)
T 4b4t_M 260 AKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLR 339 (434)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCS
T ss_pred HHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhc
Confidence 2233444444444678999999986331 0 1111111111 123445565776544332 1
Q ss_pred c-C-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCc
Q 002939 153 I-G-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGL 199 (864)
Q Consensus 153 ~-~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 199 (864)
. + ...+.++.-+.++..++|+.+........+.+ ..++++.+.|+
T Consensus 340 pGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd--l~~lA~~t~G~ 386 (434)
T 4b4t_M 340 SGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN--WQELARSTDEF 386 (434)
T ss_dssp TTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC--HHHHHHHCSSC
T ss_pred CCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCC
Confidence 2 2 56788988899998999987763222112111 34677787775
No 209
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.74 E-value=0.00031 Score=74.66 Aligned_cols=192 Identities=11% Similarity=0.071 Sum_probs=94.5
Q ss_pred HHHHHhcCCCc--cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC----CCChHHHHHHHHHH-hCCcccc-
Q 002939 6 NVQNALLDPDI--SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE----TPDIGKIQGELADQ-LGMKFSQ- 77 (864)
Q Consensus 6 ~i~~~l~~~~~--~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~----~~~~~~~~~~i~~~-l~~~~~~- 77 (864)
.+.+.+..... +.+.|+|++|+|||++|+.+++....... .+.+.+.. .....+......+. ++.....
T Consensus 58 ~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (368)
T 3uk6_A 58 VVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTP---FTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAG 134 (368)
T ss_dssp HHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCC---EEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC---
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCC---cccccchhhhhcccchhHHHHHHHHHHHHHHhhhh
Confidence 35556655443 58999999999999999999998763312 23334322 22333333333332 1110000
Q ss_pred -------chhh----hhc---cccccC----CCChhhHHHHHHHHH-hcCC----eEEEEEcCCCchh--ccccccCCCC
Q 002939 78 -------GEIA----DQR---GMKFSQ----ESDVPGRARKLYARL-QKEN----KILVILDNIWEDL--DLEKVGVPSG 132 (864)
Q Consensus 78 -------~~~~----~~~---~~~~~~----~~~~~~~~~~~~~~l-~~~~----~~LlvlDdv~~~~--~~~~l~~~~~ 132 (864)
.+.. ... +..... ............... ..++ +.+|++|+++... ..+.+...+.
T Consensus 135 ~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~~~~~L~~~le 214 (368)
T 3uk6_A 135 AVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALE 214 (368)
T ss_dssp ---CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBHHHHHHHHHHTT
T ss_pred ccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccChHHHHHHHHHhh
Confidence 0000 000 000000 001111222222221 1234 3499999997652 2233322222
Q ss_pred CCCCCcEEEEEeCC-----------------hHHHhhcCCceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHh
Q 002939 133 NDWRGCKVLLTARD-----------------RHVLGSIGSKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKE 195 (864)
Q Consensus 133 ~~~~gs~IivTtR~-----------------~~v~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 195 (864)
..... .++++|.. +.+..+ ...+.+++++.++..+++.+++.... ..-.++....+++.
T Consensus 215 ~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR--~~~i~~~~~~~~e~~~il~~~~~~~~-~~~~~~~l~~l~~~ 290 (368)
T 3uk6_A 215 SDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDR--LLIVSTTPYSEKDTKQILRIRCEEED-VEMSEDAYTVLTRI 290 (368)
T ss_dssp CTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTT--EEEEEECCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHH
T ss_pred CcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhh--ccEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH
Confidence 22222 34444431 122222 34589999999999999998773211 11224556778888
Q ss_pred cC-CcchHHH
Q 002939 196 CG-GLPIAIV 204 (864)
Q Consensus 196 ~~-g~Pla~~ 204 (864)
+. |.|-.+.
T Consensus 291 ~~~G~~r~~~ 300 (368)
T 3uk6_A 291 GLETSLRYAI 300 (368)
T ss_dssp HHHSCHHHHH
T ss_pred hcCCCHHHHH
Confidence 87 7776543
No 210
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.74 E-value=1.1e-05 Score=76.04 Aligned_cols=110 Identities=13% Similarity=0.098 Sum_probs=79.6
Q ss_pred cCCCceEEEecCC-CCCCC--CCCchhhcCCCCceEEEEeccccc-----cCCcccccCCCccEEEecCcccccc-----
Q 002939 336 ECPQLEFFYIFAP-EDSPL--KIPDNIFMGMPKLKVLLFIRMRLL-----SLPSSIRLLTDLRTLCLDGCKLEDI----- 402 (864)
Q Consensus 336 ~~~~L~~L~l~~~-~~~~~--~~~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~l~~l----- 402 (864)
..+.|+.|++.++ ..... ......+...+.|++|+|++|.+. .+...+...++|++|+|++|.+.+-
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 3456777777654 32211 111233567889999999999886 3455566778999999999998862
Q ss_pred -ccccccCcccEEeC--CCCCCcc-----Cchhhccccccceeccccccccc
Q 002939 403 -RIIGELKELEILSL--QGCDIEH-----LPREIGQLTQLKLLDLSYCFELK 446 (864)
Q Consensus 403 -~~~~~l~~L~~L~l--~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~l~ 446 (864)
..+...++|++|+| ++|.+.. +...+...++|++|++++|. +.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~-i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ-QG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS-HH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC-CC
Confidence 55777889999999 8888872 45566677899999999986 44
No 211
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.73 E-value=0.00023 Score=77.00 Aligned_cols=148 Identities=20% Similarity=0.198 Sum_probs=85.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPG 96 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (864)
+-|.|+|++|+|||++|+.++...... .+.++++..... . . .....
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~-----f~~is~~~~~~~----------~----~---------------g~~~~ 95 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVP-----FFHISGSDFVEL----------F----V---------------GVGAA 95 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEEEGGGTTTC----------C----T---------------THHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCC-----eeeCCHHHHHHH----------H----h---------------cccHH
Confidence 468899999999999999999976432 345555432210 0 0 00111
Q ss_pred HHHHHHHHHhcCCeEEEEEcCCCchhc----------------cccccCCCC--CCCCCcEEEEEeCChHHHh----hc-
Q 002939 97 RARKLYARLQKENKILVILDNIWEDLD----------------LEKVGVPSG--NDWRGCKVLLTARDRHVLG----SI- 153 (864)
Q Consensus 97 ~~~~~~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs~IivTtR~~~v~~----~~- 153 (864)
....+......+...+|++|+++.... ...+...+. ....+..||.||....... ..
T Consensus 96 ~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~g 175 (476)
T 2ce7_A 96 RVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPG 175 (476)
T ss_dssp HHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTT
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccC
Confidence 223334444346788999999864311 111211110 0123556777777664432 11
Q ss_pred C-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcc
Q 002939 154 G-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLP 200 (864)
Q Consensus 154 ~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 200 (864)
+ ...+.++..+.++-.++++.++....-.++.. ...+++.+.|+.
T Consensus 176 RFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~--l~~la~~t~G~s 221 (476)
T 2ce7_A 176 RFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN--LEIIAKRTPGFV 221 (476)
T ss_dssp SSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC--HHHHHHTCTTCC
T ss_pred cceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh--HHHHHHhcCCCc
Confidence 2 45788998898888888888774322222211 335788888876
No 212
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.69 E-value=1.5e-05 Score=74.99 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=28.7
Q ss_pred HHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 5 KNVQNALLD---PDISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 5 ~~i~~~l~~---~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
+.+.+++.+ ...+.+.|+|++|+||||||+.+++...
T Consensus 24 ~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 24 LTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344444443 3347899999999999999999999876
No 213
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.67 E-value=0.0011 Score=70.79 Aligned_cols=120 Identities=9% Similarity=0.093 Sum_probs=63.1
Q ss_pred cCCCceEEEecCCCCCCCCCCchhhcCCCCceEEEEeccccccC-CcccccCCCccEEEecCcccccc--ccccccCccc
Q 002939 336 ECPQLEFFYIFAPEDSPLKIPDNIFMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDGCKLEDI--RIIGELKELE 412 (864)
Q Consensus 336 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~l--~~~~~l~~L~ 412 (864)
...+|+.+.+.. ....++..+|.++.+|+.+.|..+ ++.+ ...|.++ +|+.+.+..+ ++.+ ..|.. .+|+
T Consensus 44 ~~~~i~~v~ip~---~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 44 DRDRISEVRVNS---GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GGGGCSEEEECT---TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred cccCCEEEEeCC---CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence 445666666642 223566777788888888887643 5555 3446665 4666655432 3333 22333 3577
Q ss_pred EEeCCCCCCccCchhhccccccceecccccccccccChhhhhcCcccceeecc
Q 002939 413 ILSLQGCDIEHLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMA 465 (864)
Q Consensus 413 ~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 465 (864)
.+.+..+ ++.+......-.+|..+.+..+ +..+....+..+.+++...+.
T Consensus 117 ~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~ 166 (379)
T 4h09_A 117 DFEFPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVS 166 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEEC
T ss_pred cccCCCc-cccccccccccceeeeeeccce--eeccccchhcccccccccccc
Confidence 7776554 3333322222234555544432 444444445566666665544
No 214
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.64 E-value=0.0012 Score=70.34 Aligned_cols=78 Identities=8% Similarity=0.101 Sum_probs=44.3
Q ss_pred hcCCCCceEEEEeccccccC-CcccccCCCccEEEecCcccccc--ccccccCcccEEeCCCCCCccCchhhccccccce
Q 002939 360 FMGMPKLKVLLFIRMRLLSL-PSSIRLLTDLRTLCLDGCKLEDI--RIIGELKELEILSLQGCDIEHLPREIGQLTQLKL 436 (864)
Q Consensus 360 ~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~ 436 (864)
|....+|+.+.+.. .++.+ ..+|.+|.+|+.+.|..+ ++.+ ..|.+. +|+.+.+..+ ++.++...-...+|+.
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~ 117 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDD 117 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSE
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCccc
Confidence 55667777777754 45566 345788888888888643 5555 335554 4555555432 4444333223345666
Q ss_pred ecccc
Q 002939 437 LDLSY 441 (864)
Q Consensus 437 L~l~~ 441 (864)
+.+..
T Consensus 118 i~lp~ 122 (379)
T 4h09_A 118 FEFPG 122 (379)
T ss_dssp EECCT
T ss_pred ccCCC
Confidence 66654
No 215
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.64 E-value=0.00015 Score=68.40 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=34.2
Q ss_pred hHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 3 TLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
+++++.+++.....+.+.|+|++|+|||++|+.+++....
T Consensus 30 ~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 30 EIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp HHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 5677888888776778899999999999999999988643
No 216
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.59 E-value=0.00024 Score=77.62 Aligned_cols=139 Identities=12% Similarity=0.186 Sum_probs=78.3
Q ss_pred chHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccC-----CCeEEEEEccCCCChHHHHHHHHHHhCCccc
Q 002939 2 STLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDML-----FDEVVFAEVSETPDIGKIQGELADQLGMKFS 76 (864)
Q Consensus 2 ~~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~-----f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~ 76 (864)
.+++++...+......-+.|+|++|+|||++|+.+++....... -..++.++++. ..
T Consensus 187 ~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~------------~~------ 248 (468)
T 3pxg_A 187 KEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT------------KY------ 248 (468)
T ss_dssp HHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------------------
T ss_pred HHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc------------cc------
Confidence 35777888887766677899999999999999999998643210 01133333330 00
Q ss_pred cchhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchhccccccCCCCCCCCCcEEEEEeCChHH---Hh--
Q 002939 77 QGEIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDLDLEKVGVPSGNDWRGCKVLLTARDRHV---LG-- 151 (864)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v---~~-- 151 (864)
..........+.+.....+..++++| ...+..+.+...+..+ ..++|.+|...+. ..
T Consensus 249 --------------~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~~g--~v~vI~at~~~e~~~~~~~~ 310 (468)
T 3pxg_A 249 --------------RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLARG--ELQCIGATTLDEYRKYIEKD 310 (468)
T ss_dssp ------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTTSS--SCEEEEECCTTTTHHHHTTC
T ss_pred --------------cchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhcCC--CEEEEecCCHHHHHHHhhcC
Confidence 00111223344444555677899999 2222223343333322 3466666654431 11
Q ss_pred -hc--CCceEEcCCCCHHHHHHHHHHhh
Q 002939 152 -SI--GSKTFQIDVLNEEEAWTLFKKMT 176 (864)
Q Consensus 152 -~~--~~~~~~l~~L~~~e~~~l~~~~~ 176 (864)
.. +...+.++..+.++..+++....
T Consensus 311 ~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11 13468999999999999999876
No 217
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.53 E-value=0.00021 Score=68.48 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=35.9
Q ss_pred HHHHHHHhcCC----CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEcc
Q 002939 4 LKNVQNALLDP----DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVS 55 (864)
Q Consensus 4 ~~~i~~~l~~~----~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~ 55 (864)
++.+.+++... ..+.+.|+|++|+|||++|+.+++....+ ...++|+++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~ 91 (202)
T 2w58_A 38 IRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP 91 (202)
T ss_dssp HHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH
T ss_pred HHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH
Confidence 34555666532 12789999999999999999999987644 3446677654
No 218
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.52 E-value=0.00017 Score=85.47 Aligned_cols=146 Identities=14% Similarity=0.243 Sum_probs=80.7
Q ss_pred chHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccC-----CCeEEEEEccCCCChHHHHHHHHHHhCCccc
Q 002939 2 STLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDML-----FDEVVFAEVSETPDIGKIQGELADQLGMKFS 76 (864)
Q Consensus 2 ~~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~-----f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~ 76 (864)
.+++++++.+.....+.+.++|++|+||||+|+.+++....... -..+++++++.... +...
T Consensus 177 ~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------------g~~~- 243 (854)
T 1qvr_A 177 EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------------GAKY- 243 (854)
T ss_dssp HHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------------------
T ss_pred HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------------cCcc-
Confidence 35778888887766677899999999999999999998643210 12355555432110 0000
Q ss_pred cchhhhhccccccCCCChhhHHHHHHHHHhc-CCeEEEEEcCCCchhc-------cc---cccCCCCCCCCCcEEEEEeC
Q 002939 77 QGEIADQRGMKFSQESDVPGRARKLYARLQK-ENKILVILDNIWEDLD-------LE---KVGVPSGNDWRGCKVLLTAR 145 (864)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LlvlDdv~~~~~-------~~---~l~~~~~~~~~gs~IivTtR 145 (864)
..........+.+.+.. +++.+|++|+++.... ++ .+...+.. .+..+|.+|.
T Consensus 244 --------------~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~ 307 (854)
T 1qvr_A 244 --------------RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEEC
T ss_pred --------------chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecC
Confidence 11223334444555543 3678999999975421 11 11111111 1335666665
Q ss_pred ChHHH-----hhc-C-CceEEcCCCCHHHHHHHHHHhh
Q 002939 146 DRHVL-----GSI-G-SKTFQIDVLNEEEAWTLFKKMT 176 (864)
Q Consensus 146 ~~~v~-----~~~-~-~~~~~l~~L~~~e~~~l~~~~~ 176 (864)
..... ... + ...+.+++.+.++..++++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 44321 111 1 3458999999999999987544
No 219
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.48 E-value=0.00077 Score=73.55 Aligned_cols=157 Identities=13% Similarity=0.183 Sum_probs=86.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCC
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESD 93 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 93 (864)
...+-|.|+|++|+|||++|+.+++.... ..+.+++.. +...+. ..
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~-----~fv~vn~~~----------l~~~~~-------------------g~ 281 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPE----------IMSKLA-------------------GE 281 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSS-----EEEEEEHHH----------HHTSCT-------------------TH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCC-----CEEEEEchH----------hhhhhc-------------------ch
Confidence 34467999999999999999999887532 245555422 111100 00
Q ss_pred hhhHHHHHHHHHhcCCeEEEEEcCCCchhc-------------cccccCCCC--CCCCCcEEEEEeCChHHHh----h-c
Q 002939 94 VPGRARKLYARLQKENKILVILDNIWEDLD-------------LEKVGVPSG--NDWRGCKVLLTARDRHVLG----S-I 153 (864)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~--~~~~gs~IivTtR~~~v~~----~-~ 153 (864)
.......+.+....++..+|+||+++.... ...+...+. ....+.+||.||....... . .
T Consensus 282 ~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~g 361 (489)
T 3hu3_A 282 SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361 (489)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTT
T ss_pred hHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCC
Confidence 111223333334446778999999843211 011111111 1122446666776553211 1 1
Q ss_pred C-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCc-chHHHHH
Q 002939 154 G-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGL-PIAIVTL 206 (864)
Q Consensus 154 ~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pla~~~~ 206 (864)
. ...+.+...+.++..+++..++.......+. ...++++.+.|+ +-.+..+
T Consensus 362 Rf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~--~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 362 RFDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp SSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTC--CHHHHHHTCTTCCHHHHHHH
T ss_pred cCceEEEeCCCCHHHHHHHHHHHHhcCCCcchh--hHHHHHHHccCCcHHHHHHH
Confidence 2 4678999999999999999987432222111 134677777775 4444433
No 220
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.39 E-value=0.00032 Score=71.50 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
..+.+.++|++|+|||++|+.+++....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3468899999999999999999998743
No 221
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.38 E-value=0.00019 Score=74.24 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=31.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPD 59 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~ 59 (864)
..+.++|++|+|||++|+.+++..... -...+.++++....
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~ 88 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYME 88 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCS
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeecccccc
Confidence 479999999999999999999986432 12366777765443
No 222
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.35 E-value=9.6e-05 Score=74.65 Aligned_cols=149 Identities=18% Similarity=0.152 Sum_probs=77.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPG 96 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (864)
+-+.|+|++|+|||++|+.+++..... | +.++++.-.+. ..+. .......
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~~~--~---~~v~~~~~~~~---------~~~~----------------~~~~~~~ 94 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAHVP--F---FSMGGSSFIEM---------FVGL----------------GASRVRD 94 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHTCC--C---CCCCSCTTTTS---------CSSS----------------CSSSSST
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEechHHHHHh---------hcch----------------HHHHHHH
Confidence 458899999999999999999976432 2 12222211000 0000 0111111
Q ss_pred HHHHHHHHHhcCCeEEEEEcCCCchhc-----------------cccccCCCCCC---CCCcEEEEEeCChHHHh----h
Q 002939 97 RARKLYARLQKENKILVILDNIWEDLD-----------------LEKVGVPSGND---WRGCKVLLTARDRHVLG----S 152 (864)
Q Consensus 97 ~~~~~~~~l~~~~~~LlvlDdv~~~~~-----------------~~~l~~~~~~~---~~gs~IivTtR~~~v~~----~ 152 (864)
. .+.....+..+|++|+++.... ...+...+... .....||.||....... .
T Consensus 95 ~----~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r 170 (268)
T 2r62_A 95 L----FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMR 170 (268)
T ss_dssp T----HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGS
T ss_pred H----HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcC
Confidence 2 2222224567999999965411 22222222211 12245666776553221 1
Q ss_pred -cC-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcch
Q 002939 153 -IG-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPI 201 (864)
Q Consensus 153 -~~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 201 (864)
.+ ...+.++..+.++..+++...+.......+. ....+++.+.|.|-
T Consensus 171 ~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~g~~g 219 (268)
T 2r62_A 171 PGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDV--NLQEVAKLTAGLAG 219 (268)
T ss_dssp SSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSC--CTTTTTSSSCSSCH
T ss_pred CCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCcc--CHHHHHHHcCCCCH
Confidence 12 4567888899999999998877322111111 01246666777654
No 223
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.29 E-value=0.0013 Score=77.05 Aligned_cols=146 Identities=16% Similarity=0.218 Sum_probs=87.0
Q ss_pred chHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccC----CCeEEE-EEccCCCChHHHHHHHHHHhCCccc
Q 002939 2 STLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDML----FDEVVF-AEVSETPDIGKIQGELADQLGMKFS 76 (864)
Q Consensus 2 ~~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~~-v~~~~~~~~~~~~~~i~~~l~~~~~ 76 (864)
.+++++++.|......-+.|+|++|+||||+|+.+++....... .+..+| ++++.. +...
T Consensus 193 ~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l-------------~~~~-- 257 (758)
T 1r6b_X 193 KELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL-------------LAGT-- 257 (758)
T ss_dssp HHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------------CCC--
T ss_pred HHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-------------hccc--
Confidence 35778888888777778899999999999999999987643211 122222 221110 0000
Q ss_pred cchhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchh----------c-cccccCCCCCCCCCcEEEEEeC
Q 002939 77 QGEIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDL----------D-LEKVGVPSGNDWRGCKVLLTAR 145 (864)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~----------~-~~~l~~~~~~~~~gs~IivTtR 145 (864)
. ...........+.+.+...+..+|++|+++... + .+.+...+.. .+.++|.+|.
T Consensus 258 ----------~--~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~I~at~ 323 (758)
T 1r6b_X 258 ----------K--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTT 323 (758)
T ss_dssp ----------C--CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEEEC
T ss_pred ----------c--ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEEEEEeC
Confidence 0 012234445556666655567999999997541 1 1223333322 2446777776
Q ss_pred ChHHHhhc-------C-CceEEcCCCCHHHHHHHHHHhh
Q 002939 146 DRHVLGSI-------G-SKTFQIDVLNEEEAWTLFKKMT 176 (864)
Q Consensus 146 ~~~v~~~~-------~-~~~~~l~~L~~~e~~~l~~~~~ 176 (864)
..+..... . ...+.++..+.++..+++....
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 54432111 1 2468999999999998887654
No 224
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.26 E-value=0.00045 Score=79.17 Aligned_cols=150 Identities=13% Similarity=0.160 Sum_probs=87.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
..+-|.++|++|+|||+||++++++.... .+.+++++. . +.. ....
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~~l----------~---sk~----------------~ges 282 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPEI----------M---SKL----------------AGES 282 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHHHH----------H---SSC----------------TTHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhHHh----------h---ccc----------------chHH
Confidence 35789999999999999999999876543 455554321 1 100 1112
Q ss_pred hhHHHHHHHHHhcCCeEEEEEcCCCchhc-------------cccccCCCC--CCCCCcEEEEEeCChHHHh----hc-C
Q 002939 95 PGRARKLYARLQKENKILVILDNIWEDLD-------------LEKVGVPSG--NDWRGCKVLLTARDRHVLG----SI-G 154 (864)
Q Consensus 95 ~~~~~~~~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~--~~~~gs~IivTtR~~~v~~----~~-~ 154 (864)
......+.+........+|++|+++.... ...+..... ....+..||.||....... +. +
T Consensus 283 e~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GR 362 (806)
T 3cf2_A 283 ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGR 362 (806)
T ss_dssp HHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTS
T ss_pred HHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcc
Confidence 33344555555557789999999864311 011111110 0112334555665443222 12 2
Q ss_pred -CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcc
Q 002939 155 -SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLP 200 (864)
Q Consensus 155 -~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 200 (864)
...+++..-+.++-.++++.+........+. ....+++++.|+-
T Consensus 363 Fd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dv--dl~~lA~~T~Gfs 407 (806)
T 3cf2_A 363 FDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGHV 407 (806)
T ss_dssp SCEEEECCCCCHHHHHHHHHHTCSSSEECTTC--CHHHHHHHCCSCC
T ss_pred cceEEecCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHhcCCCC
Confidence 5778999999999999999877432222221 1346788888764
No 225
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.23 E-value=0.0017 Score=67.00 Aligned_cols=36 Identities=31% Similarity=0.396 Sum_probs=28.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE 56 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 56 (864)
...+.++|++|+|||++|+.+++.... ..+.++++.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~-----~~~~i~~~~ 85 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATK 85 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTC-----CEEEEEGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEcchh
Confidence 457889999999999999999987632 245666654
No 226
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.19 E-value=0.0011 Score=77.48 Aligned_cols=139 Identities=14% Similarity=0.239 Sum_probs=78.6
Q ss_pred chHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccC-C---C-eEEEEEccCCCChHHHHHHHHHHhCCccc
Q 002939 2 STLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDML-F---D-EVVFAEVSETPDIGKIQGELADQLGMKFS 76 (864)
Q Consensus 2 ~~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~-f---~-~~~~v~~~~~~~~~~~~~~i~~~l~~~~~ 76 (864)
.+++++...|......-+.++|++|+|||++|+.+++....... + + .++.+++ +...
T Consensus 187 ~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-----------------g~~~- 248 (758)
T 3pxi_A 187 KEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-----------------GTKY- 248 (758)
T ss_dssp HHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------------------
T ss_pred HHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------------cccc-
Confidence 36778888887766677899999999999999999998633210 0 1 1222222 0000
Q ss_pred cchhhhhccccccCCCChhhHHHHHHHHHhcCCeEEEEEcCCCchhccccccCCCCCCCCCcEEEEEeCChHH---Hh--
Q 002939 77 QGEIADQRGMKFSQESDVPGRARKLYARLQKENKILVILDNIWEDLDLEKVGVPSGNDWRGCKVLLTARDRHV---LG-- 151 (864)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v---~~-- 151 (864)
..........+.+.....++.+|++|. ..+..+.+...+.. ...++|.||...+. ..
T Consensus 249 --------------~G~~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 249 --------------RGEFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp ------------------CTTHHHHHHHHHTCCCCEEEECC----------CCCTTS--SSCEEEEECCTTTTHHHHTTC
T ss_pred --------------cchHHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHHhc--CCEEEEeCCChHHHHHHhhcc
Confidence 001122233444445456788999992 22222333333332 23467777665441 11
Q ss_pred -hc--CCceEEcCCCCHHHHHHHHHHhh
Q 002939 152 -SI--GSKTFQIDVLNEEEAWTLFKKMT 176 (864)
Q Consensus 152 -~~--~~~~~~l~~L~~~e~~~l~~~~~ 176 (864)
.. +...+.++..+.++..+++....
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11 13568999999999999999765
No 227
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.08 E-value=0.00016 Score=64.92 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=26.7
Q ss_pred HHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 4 LKNVQNALLD--PDISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 4 ~~~i~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
++++.+.+.. ....-|.|+|++|+|||++|+.+++..
T Consensus 10 ~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 10 INQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp HHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 4455555431 223457899999999999999998864
No 228
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.07 E-value=0.0005 Score=69.16 Aligned_cols=39 Identities=10% Similarity=0.110 Sum_probs=29.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET 57 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~ 57 (864)
..|.|+|++|+|||++|+.+++..... -...+.++++..
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~ 68 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAAL 68 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCC
Confidence 578899999999999999999865422 123567787764
No 229
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.06 E-value=0.0036 Score=62.80 Aligned_cols=127 Identities=13% Similarity=0.182 Sum_probs=72.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPG 96 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (864)
+-+.++|++|+||||||+.++..... ..+++......+.. ......
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~-----------------------------~~~~~~ 90 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMY-----------------------------VGESER 90 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSST-----------------------------THHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhh-----------------------------hhHHHH
Confidence 34999999999999999999987543 24555543321100 000011
Q ss_pred HHHHHHHHHhcCCeEEEEEcCCCchhcc-------------ccccCCCCC--CCCCcEEEEEeCChHHHh----hc-C-C
Q 002939 97 RARKLYARLQKENKILVILDNIWEDLDL-------------EKVGVPSGN--DWRGCKVLLTARDRHVLG----SI-G-S 155 (864)
Q Consensus 97 ~~~~~~~~l~~~~~~LlvlDdv~~~~~~-------------~~l~~~~~~--~~~gs~IivTtR~~~v~~----~~-~-~ 155 (864)
....+.+........++++|+++..... ..+...+.. .....-++.+|....+.+ .. + .
T Consensus 91 ~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd 170 (274)
T 2x8a_A 91 AVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLD 170 (274)
T ss_dssp HHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSC
T ss_pred HHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCC
Confidence 1223333332346788999998643110 001111111 112345556776665443 11 2 6
Q ss_pred ceEEcCCCCHHHHHHHHHHhhC
Q 002939 156 KTFQIDVLNEEEAWTLFKKMTG 177 (864)
Q Consensus 156 ~~~~l~~L~~~e~~~l~~~~~~ 177 (864)
..+.+...+.++-.++++....
T Consensus 171 ~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHHTT
T ss_pred eEEEeCCcCHHHHHHHHHHHHh
Confidence 7788999999999999988763
No 230
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.97 E-value=0.0041 Score=61.84 Aligned_cols=147 Identities=18% Similarity=0.181 Sum_probs=78.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhhH
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPGR 97 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (864)
-+.|+|++|+||||||+.++..... ..+.++... +.... .......
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~-----~~i~~~~~~----------~~~~~-------------------~~~~~~~ 96 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSD----------FVEMF-------------------VGVGAAR 96 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHHH----------HHHSC-------------------TTHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeeHHH----------HHHHH-------------------hhHHHHH
Confidence 4899999999999999999987642 234444321 11100 0001112
Q ss_pred HHHHHHHHhcCCeEEEEEcCCCchhc----------------cccccCCCCCC--CCCcEEEEEeCChHHHhh-----cC
Q 002939 98 ARKLYARLQKENKILVILDNIWEDLD----------------LEKVGVPSGND--WRGCKVLLTARDRHVLGS-----IG 154 (864)
Q Consensus 98 ~~~~~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~~~--~~gs~IivTtR~~~v~~~-----~~ 154 (864)
...+.+........++++|+++.... ...+...+..+ .....++.||........ ..
T Consensus 97 i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~r 176 (254)
T 1ixz_A 97 VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGR 176 (254)
T ss_dssp HHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTS
T ss_pred HHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCc
Confidence 23334444323567899999853210 11121111111 122345556666554431 12
Q ss_pred -CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcc
Q 002939 155 -SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLP 200 (864)
Q Consensus 155 -~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 200 (864)
...+.++..+.++-.++++.++....-..+. ....+++.+.|+-
T Consensus 177 f~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 221 (254)
T 1ixz_A 177 FDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 221 (254)
T ss_dssp SCEEEECCSCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred CCeEEeeCCcCHHHHHHHHHHHHcCCCCCccc--CHHHHHHHcCCCC
Confidence 5678999999998888888776332211111 1335777777754
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.91 E-value=0.0015 Score=76.37 Aligned_cols=123 Identities=18% Similarity=0.253 Sum_probs=69.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhhH
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPGR 97 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (864)
.+.++|++|+|||++|+.+++..... -...+.++++.-..... ..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~~-----------------------------~~---- 567 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHS-----------------------------TS---- 567 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSCC-----------------------------CC----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhcccccc-----------------------------cc----
Confidence 79999999999999999999986432 23467777765321100 00
Q ss_pred HHHHHHHHhcCCeEEEEEcCCCchhc--cccccCCCC-----C------CCCCcEEEEEeCC-----h------------
Q 002939 98 ARKLYARLQKENKILVILDNIWEDLD--LEKVGVPSG-----N------DWRGCKVLLTARD-----R------------ 147 (864)
Q Consensus 98 ~~~~~~~l~~~~~~LlvlDdv~~~~~--~~~l~~~~~-----~------~~~gs~IivTtR~-----~------------ 147 (864)
...+.........-+|+||+++.... .+.+...+. . .....+||.||.. .
T Consensus 568 ~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p 647 (758)
T 3pxi_A 568 GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRP 647 (758)
T ss_dssp ---CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCH
T ss_pred cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCH
Confidence 00111122223344899999965421 111111110 0 1134588888873 1
Q ss_pred HHHhhcCCceEEcCCCCHHHHHHHHHHhh
Q 002939 148 HVLGSIGSKTFQIDVLNEEEAWTLFKKMT 176 (864)
Q Consensus 148 ~v~~~~~~~~~~l~~L~~~e~~~l~~~~~ 176 (864)
.+..++ ...+.+.+++.++..+++....
T Consensus 648 ~l~~Rl-~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 648 EFINRI-DEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp HHHTTS-SEEEECC--CHHHHHHHHHHHH
T ss_pred HHHhhC-CeEEecCCCCHHHHHHHHHHHH
Confidence 111122 3688999999999888887754
No 232
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.90 E-value=0.0058 Score=66.44 Aligned_cols=145 Identities=17% Similarity=0.136 Sum_probs=78.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPG 96 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (864)
+-|.|+|++|+||||||+.++..... ..++++.+.-... ....
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~~-----~~i~i~g~~~~~~--------------------------------~~g~ 107 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDFVEM--------------------------------FVGV 107 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTTC-----CEEEEEGGGGTSS--------------------------------CTTH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEehhHHHHh--------------------------------hhhh
Confidence 45999999999999999999987642 2456655431110 0000
Q ss_pred HHHHHHHHHhc---CCeEEEEEcCCCchhc----------------cccccCCCCCC--CCCcEEEEEeCChHHHhh---
Q 002939 97 RARKLYARLQK---ENKILVILDNIWEDLD----------------LEKVGVPSGND--WRGCKVLLTARDRHVLGS--- 152 (864)
Q Consensus 97 ~~~~~~~~l~~---~~~~LlvlDdv~~~~~----------------~~~l~~~~~~~--~~gs~IivTtR~~~v~~~--- 152 (864)
....+...... ....++++|+++.... ...+...+..+ ..+..|+.||....+...
T Consensus 108 ~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLl 187 (499)
T 2dhr_A 108 GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALL 187 (499)
T ss_dssp HHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTS
T ss_pred HHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccc
Confidence 11111111211 2346889998853310 11121111111 123355556666554331
Q ss_pred --cC-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcc
Q 002939 153 --IG-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLP 200 (864)
Q Consensus 153 --~~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 200 (864)
.. ...+.++..+.++-.+++..++....-.++. ....+++.+.|+.
T Consensus 188 r~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv--~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 188 RPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 236 (499)
T ss_dssp STTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS--TTHHHHTTSCSCC
T ss_pred cccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH--HHHHHHHhcCCCC
Confidence 12 4678999999999999998776322111111 1335777787765
No 233
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.87 E-value=0.0027 Score=70.65 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=24.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
....+.++|++|+||||+|+.++....
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356899999999999999999998874
No 234
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.87 E-value=0.0043 Score=64.14 Aligned_cols=90 Identities=20% Similarity=0.224 Sum_probs=57.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
.+++.|+|++|+||||||.+++...... -..++|++....++.. .++.++.... ........+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~--------~l~i~~~~~~e 125 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLK--------SLLISQPDHGE 125 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGG--------GCEEECCSSHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchh--------hhhhhhccCHH
Confidence 3699999999999999999999886543 2357899887766643 4556654322 11111223344
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCc
Q 002939 96 GRARKLYARLQKENKILVILDNIWE 120 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~ 120 (864)
+....+.......+.-++|+|.+..
T Consensus 126 ~~l~~~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 126 QALEIVDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred HHHHHHHHHhhhcCCCeEEehHhhh
Confidence 4444444434334556899998753
No 235
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.86 E-value=0.0043 Score=62.02 Aligned_cols=91 Identities=9% Similarity=0.086 Sum_probs=58.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhhH
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPGR 97 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (864)
++-|+|++|+|||||+.+++.....+..-..++|++..+.++.. .++.++..... .......+..+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~--------llv~~~~~~E~~ 96 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPER--------VIHTPVQSLEQL 96 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGG--------EEEEECSBHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHH--------eEEEcCCCHHHH
Confidence 78999999999999999988776543112468999988777653 36777764321 111122333333
Q ss_pred HHHHHHHH---hcCCeEEEEEcCCCch
Q 002939 98 ARKLYARL---QKENKILVILDNIWED 121 (864)
Q Consensus 98 ~~~~~~~l---~~~~~~LlvlDdv~~~ 121 (864)
...+.+.+ ..++.-+||+|-|...
T Consensus 97 ~l~i~~~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 97 RIDMVNQLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHHHHHHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHHHHHHHhhccCceEEEEeccccc
Confidence 12334444 4467789999988543
No 236
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.79 E-value=0.01 Score=59.83 Aligned_cols=147 Identities=18% Similarity=0.184 Sum_probs=79.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhhH
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPGR 97 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (864)
-+.|+|++|+||||||+.++..... ..+.++... +.... .......
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~-----~~i~~~~~~----------~~~~~-------------------~~~~~~~ 120 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSD----------FVEMF-------------------VGVGAAR 120 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHHH----------HHHST-------------------TTHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHHcCC-----CEEEecHHH----------HHHHH-------------------hhHHHHH
Confidence 4899999999999999999987642 244444321 11100 0001112
Q ss_pred HHHHHHHHhcCCeEEEEEcCCCchh----------------ccccccCCCCCCC--CCcEEEEEeCChHHHh-----hcC
Q 002939 98 ARKLYARLQKENKILVILDNIWEDL----------------DLEKVGVPSGNDW--RGCKVLLTARDRHVLG-----SIG 154 (864)
Q Consensus 98 ~~~~~~~l~~~~~~LlvlDdv~~~~----------------~~~~l~~~~~~~~--~gs~IivTtR~~~v~~-----~~~ 154 (864)
...+.+........++|+|+++... ....+...+..+. ....++.||....+.. ...
T Consensus 121 i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~r 200 (278)
T 1iy2_A 121 VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGR 200 (278)
T ss_dssp HHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTS
T ss_pred HHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCc
Confidence 2233343333456789999985321 0111211111111 1234445666554332 112
Q ss_pred -CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcc
Q 002939 155 -SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLP 200 (864)
Q Consensus 155 -~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 200 (864)
...+.++..+.++-.+++..++......++. ....+++.+.|+-
T Consensus 201 f~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 201 FDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp SCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred CCeEEEeCCcCHHHHHHHHHHHHccCCCCccc--CHHHHHHHcCCCC
Confidence 5678999999999999988776432211111 1335777887765
No 237
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.75 E-value=0.0015 Score=65.73 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=44.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVPG 96 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (864)
+++.|+|++|+||||||.+++.. .. ..+.|+++..... +.. . ..+...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-~G----~~VlyIs~~~eE~-----------v~~--~--------------~~~le~ 171 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-LG----GKDKYATVRFGEP-----------LSG--Y--------------NTDFNV 171 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-HH----TTSCCEEEEBSCS-----------STT--C--------------BCCHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-CC----CCEEEEEecchhh-----------hhh--h--------------hcCHHH
Confidence 57889999999999999999887 21 2355666621111 000 0 022344
Q ss_pred HHHHHHHHHhcCCeEEEEEcCCCch
Q 002939 97 RARKLYARLQKENKILVILDNIWED 121 (864)
Q Consensus 97 ~~~~~~~~l~~~~~~LlvlDdv~~~ 121 (864)
..+.+.+.+.+.+ +||+|++...
T Consensus 172 ~l~~i~~~l~~~~--LLVIDsI~aL 194 (331)
T 2vhj_A 172 FVDDIARAMLQHR--VIVIDSLKNV 194 (331)
T ss_dssp HHHHHHHHHHHCS--EEEEECCTTT
T ss_pred HHHHHHHHHhhCC--EEEEeccccc
Confidence 5556666676434 9999998643
No 238
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.69 E-value=0.0079 Score=62.47 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=35.7
Q ss_pred ceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHH
Q 002939 156 KTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIV 204 (864)
Q Consensus 156 ~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~ 204 (864)
....+++.+.++..+++.+.+... .....++.+..|++.+.|.|-.+.
T Consensus 173 l~~~Ld~~~~~~l~~iL~~~~~~~-~~~~~~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 173 IILELDFYTVKELKEIIKRAASLM-DVEIEDAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHT-TCCBCHHHHHHHHHTSTTCHHHHH
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHhcCCChHHHH
Confidence 458999999999999999876211 112335667899999999997553
No 239
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.63 E-value=0.0032 Score=64.30 Aligned_cols=52 Identities=13% Similarity=0.234 Sum_probs=32.9
Q ss_pred HHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC
Q 002939 4 LKNVQNALLD--PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET 57 (864)
Q Consensus 4 ~~~i~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~ 57 (864)
++++.+.+.. .....|.|+|++|+|||++|+.+++...... ...+.++++..
T Consensus 11 ~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~--~~~v~v~~~~~ 64 (304)
T 1ojl_A 11 MQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSD--RPLVTLNCAAL 64 (304)
T ss_dssp HHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSS--SCCCEEECSSC
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccC--CCeEEEeCCCC
Confidence 3444444432 2335678999999999999999998643221 12345666654
No 240
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.59 E-value=0.0027 Score=64.93 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=34.7
Q ss_pred HHHHHHhcCC---CccEEEEEcCCCCcHHHHHHHHHHHhh-hccCCCeEEEEEcc
Q 002939 5 KNVQNALLDP---DISIIGMYGMGGVGKTTLVKEVARRAK-KDMLFDEVVFAEVS 55 (864)
Q Consensus 5 ~~i~~~l~~~---~~~vi~i~G~~G~GKTtLa~~~~~~~~-~~~~f~~~~~v~~~ 55 (864)
+.+.+++.+. ..+.+.|+|++|+|||+||+.+++... .+ ...++++++.
T Consensus 138 ~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~--g~~v~~~~~~ 190 (308)
T 2qgz_A 138 SAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK--GVSTTLLHFP 190 (308)
T ss_dssp HHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS--CCCEEEEEHH
T ss_pred HHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEHH
Confidence 3444566531 247899999999999999999999876 43 2345666653
No 241
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.58 E-value=0.014 Score=57.55 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=58.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcc----CCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDM----LFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQE 91 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 91 (864)
..++.|+|++|+||||++..++....... .-..++|++....+...++ ..+++.++.... +..+. ......
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~--~~~~~--~~~~~~ 98 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGS--DVLDN--VAYARA 98 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHH--HHHHT--EEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHH--HHhhC--eEEEec
Confidence 46999999999999999999998643211 1356899988776555544 344555543221 00000 111111
Q ss_pred CChh---hHHHHHHHHHhcCCeEEEEEcCCCc
Q 002939 92 SDVP---GRARKLYARLQKENKILVILDNIWE 120 (864)
Q Consensus 92 ~~~~---~~~~~~~~~l~~~~~~LlvlDdv~~ 120 (864)
.+.. .....+.+.+...+.-+||+|++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 1222 2233345555445778999998853
No 242
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.57 E-value=0.012 Score=56.92 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=37.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLG 72 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 72 (864)
...++.|.|++|+||||+|..++. .. -..++|++.....+...+. .+.+..+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~~-~~~~~~~ 70 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERLV-QMAETRG 70 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHHH-HHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHHH-HHHHhcC
Confidence 346999999999999999999988 21 2468899887755655543 3444433
No 243
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.52 E-value=0.0094 Score=61.88 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=54.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
.+++.|+|++|+||||||.+++...... -..++|++....++.. .++.++..... .......+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~--------l~i~~~~~~e 125 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDS--------LLVSQPDTGE 125 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGG--------CEEECCSSHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHH--------eEEecCCCHH
Confidence 4799999999999999999998776543 2468899988766543 24555543210 1111122333
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCC
Q 002939 96 GRARKLYARLQKENKILVILDNIW 119 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~ 119 (864)
+..+.+.......+.-+||+|.+.
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGG
T ss_pred HHHHHHHHHHhcCCCCEEEEcChH
Confidence 333333323323445699999874
No 244
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.52 E-value=0.0045 Score=60.64 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=33.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHH
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGE 66 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~ 66 (864)
..+++|.|++|+||||+++.++...... -..++|+.... ...++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHH
Confidence 3699999999999999999999765533 23477776544 34444433
No 245
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.51 E-value=0.011 Score=61.69 Aligned_cols=89 Identities=21% Similarity=0.220 Sum_probs=55.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
.+++.|+|++|+||||+|.+++...... -..++|++....++.. .++.++.... ...+....+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~--------~l~i~~~~~~e 138 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTD--------ELLVSQPDNGE 138 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGG--------GCEEECCSSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHH--------HceeecCCcHH
Confidence 4699999999999999999998876543 2468999988766543 2445554321 01111123344
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCC
Q 002939 96 GRARKLYARLQKENKILVILDNIW 119 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~ 119 (864)
+..+.+.......+--+||+|.+.
T Consensus 139 ~~l~~l~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 139 QALEIMELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECTT
T ss_pred HHHHHHHHHHhcCCCCEEEEeChH
Confidence 444444333333445699999875
No 246
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.46 E-value=0.01 Score=61.72 Aligned_cols=89 Identities=21% Similarity=0.241 Sum_probs=54.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
.+++.|+|.+|+||||+|.+++...... -..++|++....++.. .++.++.... ........+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~--------~l~i~~~~~~e 127 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDID--------NLLCSQPDTGE 127 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGG--------GCEEECCSSHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChh--------heeeeCCCCHH
Confidence 4699999999999999999998876543 2468999987776643 2455554321 01111122333
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCC
Q 002939 96 GRARKLYARLQKENKILVILDNIW 119 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~ 119 (864)
+..+.+.......+.-+||+|.+.
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGG
T ss_pred HHHHHHHHHHhccCCCEEEEcCHH
Confidence 333333222223445589999874
No 247
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.42 E-value=0.015 Score=60.43 Aligned_cols=101 Identities=17% Similarity=0.256 Sum_probs=60.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcc----CCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDM----LFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQ 90 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 90 (864)
...++.|+|++|+||||+|.+++....... .-..++|++....++...+. .+++.++.... +..+.. .+..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~--~~l~~l--~~~~ 195 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHD--AVLDNV--LYAR 195 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHH--HHHHTE--EEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHH--HHHhce--eEee
Confidence 346999999999999999999998743211 13468999998887777664 34555554321 111111 1111
Q ss_pred CCChh---hHHHHHHHHHhc--CCeEEEEEcCCCc
Q 002939 91 ESDVP---GRARKLYARLQK--ENKILVILDNIWE 120 (864)
Q Consensus 91 ~~~~~---~~~~~~~~~l~~--~~~~LlvlDdv~~ 120 (864)
..+.. +....+.+.+.+ .+.-+||+|.+..
T Consensus 196 ~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 196 AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 11122 333344455544 5667999998853
No 248
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.40 E-value=0.014 Score=60.14 Aligned_cols=101 Identities=17% Similarity=0.316 Sum_probs=61.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcc----CCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDM----LFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQE 91 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 91 (864)
.+++.|+|++|+||||+|.+++....... .-..++|++....++..++. .+++.++.... +..+. ..+...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~--~~~~~--l~~~~~ 181 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDID--NVMNN--IYYIRA 181 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHH--HHHHT--EEEEEC
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHH--HHhcc--EEEEeC
Confidence 46999999999999999999988743221 02468999998887777665 34556654321 11111 111111
Q ss_pred CChh---hHHHHHHHHHhc-CCeEEEEEcCCCch
Q 002939 92 SDVP---GRARKLYARLQK-ENKILVILDNIWED 121 (864)
Q Consensus 92 ~~~~---~~~~~~~~~l~~-~~~~LlvlDdv~~~ 121 (864)
.+.. +..+.+...+.+ .+.-+||+|.+...
T Consensus 182 ~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 182 INTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp CSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 2222 234455555554 56779999988643
No 249
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.36 E-value=0.026 Score=58.91 Aligned_cols=163 Identities=10% Similarity=-0.043 Sum_probs=100.0
Q ss_pred HHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhcc
Q 002939 6 NVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRG 85 (864)
Q Consensus 6 ~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 85 (864)
++.+.+.+.-.++..++|+.|.||++.++.+....... .|+....+......+++++.
T Consensus 8 ~l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~--------------------- 65 (343)
T 1jr3_D 8 QLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIF--------------------- 65 (343)
T ss_dssp THHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHH---------------------
T ss_pred HHHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHH---------------------
Confidence 45555653445799999999999999999998876533 24332222333333333322
Q ss_pred ccccCCCChhhHHHHHHH-HHhcCCeEEEEEcCCCc-h--hccccccCCCCCCCCCcEEEEEeCC-------hHHHhhcC
Q 002939 86 MKFSQESDVPGRARKLYA-RLQKENKILVILDNIWE-D--LDLEKVGVPSGNDWRGCKVLLTARD-------RHVLGSIG 154 (864)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~-~l~~~~~~LlvlDdv~~-~--~~~~~l~~~~~~~~~gs~IivTtR~-------~~v~~~~~ 154 (864)
+.+.. -+ -+++-++|+|+++. . ..++.+...+.....++.+|+++.. ..+.....
T Consensus 66 -------------~~~~~~pl-f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~ 131 (343)
T 1jr3_D 66 -------------SLCQAMSL-FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALA 131 (343)
T ss_dssp -------------HHHHHHHH-CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHT
T ss_pred -------------HHhcCcCC-ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHH
Confidence 11111 12 25677889999865 3 3455555444444456777776643 24444433
Q ss_pred --CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcchHHHH
Q 002939 155 --SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLPIAIVT 205 (864)
Q Consensus 155 --~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla~~~ 205 (864)
...++..+++.++....+...+.... ..-..+.+..+++.++|.+..+..
T Consensus 132 sr~~~~~~~~l~~~~l~~~l~~~~~~~g-~~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 132 NRSVQVTCQTPEQAQLPRWVAARAKQLN-LELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp TTCEEEEECCCCTTHHHHHHHHHHHHTT-CEECHHHHHHHHHSSTTCHHHHHH
T ss_pred hCceEEEeeCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhchHHHHHHH
Confidence 67899999999999988888772211 112235566888899998876643
No 250
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.27 E-value=0.018 Score=61.06 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
..+.++|++|+|||++|+.+++..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 251
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.27 E-value=0.014 Score=60.35 Aligned_cols=100 Identities=19% Similarity=0.230 Sum_probs=60.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcc---------CC-----CeEEEEEccCCCChHHHHHHHHHHhCCccccchhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDM---------LF-----DEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA 81 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~---------~f-----~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 81 (864)
.+++.|+|++|+||||+|.+++....... .. ..++|++....++.+++.+ +++.++.... +..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~--~~~ 174 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQ--TVL 174 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHH--HHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHH--HHh
Confidence 46999999999999999999987632110 11 4689999988877776654 4555654321 111
Q ss_pred hhccccccCCCChh---hHHHHHHHHHhc-CCeEEEEEcCCCc
Q 002939 82 DQRGMKFSQESDVP---GRARKLYARLQK-ENKILVILDNIWE 120 (864)
Q Consensus 82 ~~~~~~~~~~~~~~---~~~~~~~~~l~~-~~~~LlvlDdv~~ 120 (864)
+. .......+.. +..+.+.+.+.+ .+.-+||+|.+..
T Consensus 175 ~~--l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 175 DN--TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp HT--EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred cC--EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 11 0111112222 234445555554 4556999998853
No 252
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.27 E-value=0.0064 Score=62.38 Aligned_cols=51 Identities=18% Similarity=0.104 Sum_probs=35.1
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCC-eEEEEEccCCC
Q 002939 7 VQNALLD-PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFD-EVVFAEVSETP 58 (864)
Q Consensus 7 i~~~l~~-~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~-~~~~v~~~~~~ 58 (864)
+++.+.. .+...++|+|++|+|||||++.+.+....+. -+ .++++-+.+..
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~-~~v~~I~~lIGER~ 216 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNH-PDCVLMVLLIDERP 216 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHC-TTSEEEEEEESSCH
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcC-CCeeEEEEEecCCh
Confidence 3444443 3457999999999999999999988764431 23 25567676543
No 253
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.12 E-value=0.015 Score=61.43 Aligned_cols=99 Identities=12% Similarity=0.197 Sum_probs=57.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcc----CCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDM----LFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQE 91 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 91 (864)
-.++.|+|++|+|||||+..++-...... .-..++|++....++...+ +.+++.++.... ...+ .......
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~--~vle--ni~~~~~ 252 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPD--DALN--NVAYARA 252 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHH--HHHH--TEEEEEC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChH--hHhh--cEEEecc
Confidence 36999999999999999998764432211 2356899998776665554 346666664321 0000 0111111
Q ss_pred CCh---hhHHHHHHHHHhcCCeEEEEEcCCC
Q 002939 92 SDV---PGRARKLYARLQKENKILVILDNIW 119 (864)
Q Consensus 92 ~~~---~~~~~~~~~~l~~~~~~LlvlDdv~ 119 (864)
... .+....+.+.+...+.-+||+|.+.
T Consensus 253 ~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 253 YNADHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred CChHHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 122 1233344444544567789999764
No 254
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.04 E-value=0.0083 Score=70.26 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET 57 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~ 57 (864)
..+.++|++|+|||++|+.+++... ...+.+++++-
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~ 524 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEY 524 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhh
Confidence 4799999999999999999998773 34567777653
No 255
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.03 E-value=0.0054 Score=72.66 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=29.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET 57 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~ 57 (864)
..+.|+|++|+|||++|+.+++...... ...+.++++.-
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~--~~~i~i~~~~~ 627 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTE--EAMIRIDMTEY 627 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSG--GGEEEECTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCC--CcEEEEechhc
Confidence 5899999999999999999999864321 23566776653
No 256
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.03 E-value=0.025 Score=55.10 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=37.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhc---c-CCCeEEEEEccCCCChHHHHHHHHHHhC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKD---M-LFDEVVFAEVSETPDIGKIQGELADQLG 72 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~---~-~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 72 (864)
-.+++|.|+.|+|||||++.++...... . ....++|++.........+ ..+.+..+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i-~~~~~~~~ 84 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRG 84 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHH-HHHHHHcC
Confidence 3699999999999999999998754321 1 1345888887655444333 34444443
No 257
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.03 E-value=0.029 Score=59.71 Aligned_cols=51 Identities=31% Similarity=0.479 Sum_probs=35.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC-ChHHHHHHHH
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP-DIGKIQGELA 68 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~ 68 (864)
+.++|+|.+|+|||||+..+......+ .-+.++++.+.+.. ...+++.++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhh
Confidence 579999999999999999999887654 23456676665543 3444444443
No 258
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.94 E-value=0.019 Score=59.69 Aligned_cols=57 Identities=25% Similarity=0.291 Sum_probs=38.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCC----CeEEEEEccCCCChHHHHHHHHHHhC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLF----DEVVFAEVSETPDIGKIQGELADQLG 72 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f----~~~~~v~~~~~~~~~~~~~~i~~~l~ 72 (864)
..+++.|+|++|+|||||+..++......... ..++|++....+....+ ..+++..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~ 190 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRG 190 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcC
Confidence 34799999999999999999999875311111 34689998766544443 33555544
No 259
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.87 E-value=0.0048 Score=57.32 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
|.|+|.||+|+|||||++++..+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5689999999999999999988754
No 260
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.86 E-value=0.019 Score=60.86 Aligned_cols=55 Identities=31% Similarity=0.414 Sum_probs=41.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC-ChHHHHHHHHHH
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP-DIGKIQGELADQ 70 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~ 70 (864)
+-+.++|.|.+|+|||+|+.++++..... +-+.++++-+.+.. ...++.+++.+.
T Consensus 152 kGQr~~Ifgg~G~GKT~L~~~i~~~~~~~-~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 152 KGGKIGLFGGAGVGKTVLIMELINNVAKA-HGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHTTTT-CSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred cCCeeeeecCCCCChHHHHHHHHHhhHhh-CCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 34689999999999999999999986532 34678888887764 355666666554
No 261
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.81 E-value=0.018 Score=67.35 Aligned_cols=149 Identities=14% Similarity=0.159 Sum_probs=78.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
....|.|+|++|+||||||+.++...... .+.+++.... ... ....
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~~-----~i~v~~~~l~--------------~~~---------------~g~~ 282 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPEIM--------------SKL---------------AGES 282 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTCE-----EEEEEHHHHS--------------SSS---------------TTHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCc-----EEEEEchHhh--------------hhh---------------hhhH
Confidence 34689999999999999999998865321 3455432110 000 0111
Q ss_pred hhHHHHHHHHHhcCCeEEEEEcCCCchhc----------------cccccCCCCCCCCCcEEEEEeCChHHHh----hc-
Q 002939 95 PGRARKLYARLQKENKILVILDNIWEDLD----------------LEKVGVPSGNDWRGCKVLLTARDRHVLG----SI- 153 (864)
Q Consensus 95 ~~~~~~~~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~~~~~gs~IivTtR~~~v~~----~~- 153 (864)
......+.+........++++|+++.... +-.+..... ...+..+|.||....... ..
T Consensus 283 ~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~v~vI~atn~~~~ld~al~r~g 361 (806)
T 1ypw_A 283 ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHVIVMAATNRPNSIDPALRRFG 361 (806)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSCCEEEEECSCTTTSCTTTTSTT
T ss_pred HHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccccEEEecccCCchhcCHHHhccc
Confidence 12233333333335678999999853210 111111111 112345666665543222 11
Q ss_pred C-CceEEcCCCCHHHHHHHHHHhhCCCCCCCcchHHHHHHHHhcCCcc
Q 002939 154 G-SKTFQIDVLNEEEAWTLFKKMTGDCAEKGELNFVAIDITKECGGLP 200 (864)
Q Consensus 154 ~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 200 (864)
. ...+.+...+.++..+++...+.......+. ...++++.+.|+-
T Consensus 362 Rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~--~l~~la~~t~g~~ 407 (806)
T 1ypw_A 362 RFDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGHV 407 (806)
T ss_dssp SSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTC--CTHHHHHSCSSCC
T ss_pred ccccccccCCCCHHHHHHHHHHHHhcCCCcccc--hhHHHHHhhcCcc
Confidence 1 3567888889999999998876332211111 1235666666654
No 262
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.79 E-value=0.013 Score=63.71 Aligned_cols=48 Identities=19% Similarity=0.117 Sum_probs=32.9
Q ss_pred HHHHHhcCCC--ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC
Q 002939 6 NVQNALLDPD--ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE 56 (864)
Q Consensus 6 ~i~~~l~~~~--~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 56 (864)
++++++.... .+-+.++|++|+|||++|+.+++..... -..+.++.+.
T Consensus 51 ~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~---~~~~~~~~~~ 100 (456)
T 2c9o_A 51 VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK---VPFCPMVGSE 100 (456)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT---SCEEEEEGGG
T ss_pred HHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC---ceEEEEeHHH
Confidence 4455555432 3579999999999999999999986532 1234455443
No 263
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.78 E-value=0.031 Score=55.08 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=36.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGM 73 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 73 (864)
..++.|.|++|+||||+|.+++...... -..++|++.... ..++.+.+ ..++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~~--~~~~~~~~-~~~g~ 75 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEEH--PVQVRQNM-AQFGW 75 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSSC--HHHHHHHH-HTTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccCC--HHHHHHHH-HHcCC
Confidence 4699999999999999999888765433 245888876543 44444333 34443
No 264
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.75 E-value=0.012 Score=52.66 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=34.2
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC
Q 002939 7 VQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE 56 (864)
Q Consensus 7 i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 56 (864)
.+..|.+-....++|+|+.|+|||||++.++...... . ..++|++...
T Consensus 27 ~~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g-~~~~~~~~~~ 74 (149)
T 2kjq_A 27 LVYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQALEA-G-KNAAYIDAAS 74 (149)
T ss_dssp HHHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHHTT-T-CCEEEEETTT
T ss_pred HHHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHHhc-C-CcEEEEcHHH
Confidence 3444444345789999999999999999999987643 1 2266776543
No 265
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.70 E-value=0.065 Score=56.89 Aligned_cols=39 Identities=33% Similarity=0.320 Sum_probs=30.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEcc
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVS 55 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~ 55 (864)
+.++|.++|.+|+||||++.+++.....++ ..+..+++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G--~kVllv~~D 137 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRG--YKVGVVCSD 137 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEEECC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCC--CeEEEEeCC
Confidence 367999999999999999999998876542 245555544
No 266
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.61 E-value=0.033 Score=59.37 Aligned_cols=104 Identities=25% Similarity=0.338 Sum_probs=61.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC-ChHHHHHHHHHHhCCccccchhhh-hccccccC-C
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP-DIGKIQGELADQLGMKFSQGEIAD-QRGMKFSQ-E 91 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~~-~ 91 (864)
+-+.++|.|.+|+|||+|+.++.+..... +-+.++|+-+.+.. ...++++++.+.-..... .... ........ .
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~a~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~--~l~~~rtvvV~~t~d 240 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQ--NIAESKVALVYGQMN 240 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHTTTT-CSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSS--TTCCCCEEEEEECTT
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHHHhh-CCCEEEEEEcccCcHHHHHHHHhhhcccccccc--cccccceEEEEeCCC
Confidence 44689999999999999999999986532 35778888887765 356666666554211100 0000 00000000 1
Q ss_pred CC------hhhHHHHHHHHHhc--CCeEEEEEcCCCch
Q 002939 92 SD------VPGRARKLYARLQK--ENKILVILDNIWED 121 (864)
Q Consensus 92 ~~------~~~~~~~~~~~l~~--~~~~LlvlDdv~~~ 121 (864)
+. .....-.+.++++. ++.+|+++||+...
T Consensus 241 ~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~ 278 (498)
T 1fx0_B 241 EPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRF 278 (498)
T ss_dssp SCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 11 11223345566664 79999999998543
No 267
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.60 E-value=0.062 Score=55.01 Aligned_cols=52 Identities=13% Similarity=0.077 Sum_probs=39.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQL 71 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l 71 (864)
..++.|.|.+|+||||+|.+++.....++ ..++|++.- .+..++...+....
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 46999999999999999999998766543 568887755 45666766666543
No 268
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.46 E-value=0.0059 Score=58.55 Aligned_cols=113 Identities=12% Similarity=0.017 Sum_probs=59.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
+..++.++|+.|.||||++..++++...++ ..++.+...... + ....++..++...... .....
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g--~kVli~~~~~d~--r-~~~~i~srlG~~~~~~-----------~~~~~ 74 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD--VKYLVFKPKIDT--R-SIRNIQSRTGTSLPSV-----------EVESA 74 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCCG--G-GCSSCCCCCCCSSCCE-----------EESST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEEeccCc--h-HHHHHHHhcCCCcccc-----------ccCCH
Confidence 347999999999999999999999887652 234444332221 1 1112333333222100 01122
Q ss_pred hhHHHHHHHHHhcCCeEEEEEcCCCch--hccccccCCCCCCCCCcEEEEEeCC
Q 002939 95 PGRARKLYARLQKENKILVILDNIWED--LDLEKVGVPSGNDWRGCKVLLTARD 146 (864)
Q Consensus 95 ~~~~~~~~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~IivTtR~ 146 (864)
.+..+.+.+.+..++.-+||+|.+... ++++.+.. +.+ .|-.||+|-+.
T Consensus 75 ~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 75 PEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLD 125 (223)
T ss_dssp HHHHHHHHSTTSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCS
T ss_pred HHHHHHHHHHhhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecc
Confidence 233333332222233459999998543 23333321 111 26789999983
No 269
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.46 E-value=0.016 Score=58.36 Aligned_cols=54 Identities=15% Similarity=0.019 Sum_probs=34.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhcc-CCCeEEEEEccCCCChHHHHHHH
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAKKDM-LFDEVVFAEVSETPDIGKIQGEL 67 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~-~f~~~~~v~~~~~~~~~~~~~~i 67 (864)
.+..+|+|.|+.|+||||+|+.+........ ....+..|....-.-.......+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l 83 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKL 83 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHH
Confidence 3457999999999999999999988765421 12334444655433333333333
No 270
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.46 E-value=0.0084 Score=55.40 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.+|+|.|+.|+||||+|+.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988754
No 271
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.40 E-value=0.011 Score=56.48 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=34.8
Q ss_pred HHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEcc
Q 002939 4 LKNVQNALLD--PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVS 55 (864)
Q Consensus 4 ~~~i~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~ 55 (864)
+++|.+.+.. .+..+|+|.|+.|.|||||++.+..-....+ ..+.+|...
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g--~~~g~v~~d 59 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQG--LPAEVVPMD 59 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTT--CCEEEEESG
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC--CceEEEecC
Confidence 3455565553 3557999999999999999999998766321 124455544
No 272
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.35 E-value=0.0095 Score=55.38 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999998754
No 273
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.28 E-value=0.012 Score=54.77 Aligned_cols=109 Identities=14% Similarity=0.072 Sum_probs=65.7
Q ss_pred hcCCCCceEEEEecc-ccc-----cCCcccccCCCccEEEecCcccccc------ccccccCcccEEeCCCCCCc-----
Q 002939 360 FMGMPKLKVLLFIRM-RLL-----SLPSSIRLLTDLRTLCLDGCKLEDI------RIIGELKELEILSLQGCDIE----- 422 (864)
Q Consensus 360 ~~~l~~Lr~L~L~~~-~i~-----~lp~~~~~l~~L~~L~L~~~~l~~l------~~~~~l~~L~~L~l~~~~i~----- 422 (864)
..+-+.|+.|+|+++ .|. .+-..+..-..|+.|+|++|.+.+. ..+..-+.|++|+|++|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 455677778887774 554 2344455567788888888877653 33445577888888888776
Q ss_pred cCchhhccccccceeccccccc--cccc----ChhhhhcCcccceeeccccc
Q 002939 423 HLPREIGQLTQLKLLDLSYCFE--LKVI----APNVLSNLSQLEELYMATCC 468 (864)
Q Consensus 423 ~lp~~~~~l~~L~~L~l~~~~~--l~~~----~~~~l~~l~~L~~L~l~~~~ 468 (864)
.+-..+..-+.|++|+|+++.. +..- ....+..=+.|++|+++.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 2334444555688888875521 2211 01223444677777776554
No 274
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.26 E-value=0.015 Score=53.90 Aligned_cols=121 Identities=21% Similarity=0.154 Sum_probs=62.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC---CCChHHHHHHHHHHhCCccccchhhhhccccccCCC-
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE---TPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQES- 92 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~---~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~- 92 (864)
..|.|++..|.||||.|-..+-+...++ + .+.++.... ..... .+++.++....... . +.......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G-~-rV~~vQF~Kg~~~~gE~----~~l~~L~v~~~~~g--~--gf~~~~~~~ 98 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHG-K-NVGVVQFIKGTWPNGER----NLLEPHGVEFQVMA--T--GFTWETQNR 98 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTT-C-CEEEEESSCCSSCCHHH----HHHGGGTCEEEECC--T--TCCCCGGGH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEeeCCCCCccHH----HHHHhCCcEEEEcc--c--ccccCCCCc
Confidence 4666666677999999999999877653 2 344444322 12222 34444432221111 0 11110000
Q ss_pred -----ChhhHHHHHHHHHhcCCeEEEEEcCCCch-----hccccccCCCCCCCCCcEEEEEeCCh
Q 002939 93 -----DVPGRARKLYARLQKENKILVILDNIWED-----LDLEKVGVPSGNDWRGCKVLLTARDR 147 (864)
Q Consensus 93 -----~~~~~~~~~~~~l~~~~~~LlvlDdv~~~-----~~~~~l~~~~~~~~~gs~IivTtR~~ 147 (864)
......+...+.+..++-=|||||++... .+.+.+...+.......-||+|+|..
T Consensus 99 ~~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 99 EADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 11223344455554344459999998432 22333333333334456899999975
No 275
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.21 E-value=0.043 Score=68.86 Aligned_cols=90 Identities=21% Similarity=0.221 Sum_probs=59.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
+.+.|.|+|++|+|||+||.+++.....+ =..++|+++.+..+... ++.++.+... ......+..
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~--------l~v~~~~~~ 1490 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDN--------LLCSQPDTG 1490 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTT--------CEEECCSSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchh--------ceeecCChH
Confidence 45799999999999999999998876543 34588888888776554 4555543321 111122333
Q ss_pred hhHHHHHHHHHhcCCeEEEEEcCCC
Q 002939 95 PGRARKLYARLQKENKILVILDNIW 119 (864)
Q Consensus 95 ~~~~~~~~~~l~~~~~~LlvlDdv~ 119 (864)
++..+.+.+...+.+.-+||+|.+.
T Consensus 1491 E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1491 EQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred HHHHHHHHHHHhcCCCCEEEEcChh
Confidence 4444444444444677799999985
No 276
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.20 E-value=0.012 Score=55.82 Aligned_cols=27 Identities=41% Similarity=0.449 Sum_probs=23.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
+.++|+|.|++|+||||+|+.++....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 456999999999999999999998763
No 277
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.20 E-value=0.016 Score=53.81 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=28.3
Q ss_pred HHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 5 KNVQNALLD-PDISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 5 ~~i~~~l~~-~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
+.+..++.+ .+.+.+.|+|++|+||||+|..+++...
T Consensus 46 ~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 46 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445555554 2234899999999999999999998864
No 278
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.18 E-value=0.076 Score=56.33 Aligned_cols=38 Identities=32% Similarity=0.248 Sum_probs=29.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEcc
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVS 55 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~ 55 (864)
.++|.++|++|+||||++..++.....++ ..+..+++.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G--~kVllv~~D 134 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRG--YKVGLVAAD 134 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTT--CCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEecC
Confidence 57999999999999999999998876542 235555544
No 279
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.16 E-value=0.016 Score=55.01 Aligned_cols=39 Identities=21% Similarity=0.443 Sum_probs=30.7
Q ss_pred HHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 4 LKNVQNALLD---PDISIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 4 ~~~i~~~l~~---~~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
+++|.+.+.. ....+|+|.|+.|+||||+++.+......
T Consensus 7 ~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4566666654 34579999999999999999999887643
No 280
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.09 E-value=0.16 Score=54.22 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=37.1
Q ss_pred HHHHHHHhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC
Q 002939 4 LKNVQNALLD---------PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE 56 (864)
Q Consensus 4 ~~~i~~~l~~---------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 56 (864)
.+++.+.+.. .+.++|.++|.+|+||||++..++.....+. -..+..+++..
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~-G~kVllvd~D~ 139 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKH-KKKVLVVSADV 139 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTS-CCCEEEEECCC
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhc-CCeEEEEecCC
Confidence 3455666642 2357999999999999999999998876541 13466677654
No 281
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.08 E-value=0.014 Score=59.68 Aligned_cols=51 Identities=18% Similarity=0.113 Sum_probs=36.2
Q ss_pred HHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCC-eEEEEEccCC
Q 002939 6 NVQNALLD-PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFD-EVVFAEVSET 57 (864)
Q Consensus 6 ~i~~~l~~-~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~-~~~~v~~~~~ 57 (864)
++++.+.- .+.+.++|+|.+|+|||+|+.++++....+ +-+ .++++-+.+.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~-~~dv~~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAEN-HPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHH-CTTSEEEEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhc-CCCeEEEEEEeccC
Confidence 44555553 345789999999999999999999876543 223 3567777654
No 282
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.03 E-value=0.095 Score=53.01 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=30.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEcc
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVS 55 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~ 55 (864)
...+|.|+|++|+||||++..++...... -..+.+++..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D 141 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAAD 141 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccc
Confidence 34699999999999999999999887643 2346666654
No 283
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.94 E-value=0.015 Score=54.45 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.+.|.|.|++|+||||+|+.++....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998753
No 284
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.93 E-value=0.075 Score=53.65 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=31.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE 56 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 56 (864)
+.++++|+|++|+||||++..++....... -..+.+++...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~-G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEK-HKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTT-CCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCc
Confidence 457999999999999999999998876421 12466776644
No 285
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.87 E-value=0.017 Score=54.82 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
....+|+|.|+.|+||||+++.++...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998876
No 286
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.87 E-value=0.066 Score=52.81 Aligned_cols=38 Identities=21% Similarity=0.244 Sum_probs=28.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh-hccCCCeEEEEEcc
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK-KDMLFDEVVFAEVS 55 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~-~~~~f~~~~~v~~~ 55 (864)
-.+++|.|+.|+|||||++.++.... .. -..++|+...
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~--~~~~~~~~~~ 68 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLE 68 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEcc
Confidence 46999999999999999999985433 22 2346666644
No 287
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.85 E-value=0.015 Score=54.04 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999988653
No 288
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.84 E-value=0.017 Score=53.10 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.+.+|+|.|+.|+||||+|+.+.....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 467999999999999999999998754
No 289
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.83 E-value=0.014 Score=54.13 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 002939 17 SIIGMYGMGGVGKTTLVKEV 36 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~ 36 (864)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 290
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.83 E-value=0.13 Score=55.39 Aligned_cols=56 Identities=18% Similarity=0.267 Sum_probs=39.7
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-hHHHHHH
Q 002939 7 VQNALLD-PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPD-IGKIQGE 66 (864)
Q Consensus 7 i~~~l~~-~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~ 66 (864)
.++.|.- .+-+.++|.|.+|+|||+|+.++++.. +-+.++|+-+.+..+ ..+++++
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHH
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 3444442 344689999999999999999987653 246789999987754 4444444
No 291
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.81 E-value=0.019 Score=54.52 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=25.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
....+|+|.|++|+||||+++.++....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4557999999999999999999998876
No 292
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.79 E-value=0.23 Score=50.78 Aligned_cols=57 Identities=26% Similarity=0.274 Sum_probs=36.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC-CChHHHHHHHHHHhCC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET-PDIGKIQGELADQLGM 73 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~ 73 (864)
+..+++|+|+.|+||||+++.++....... ..+.++...-. ....+.++...+.++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~--g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHG--FSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcC--CEEEEEeecccccchHHHHHHHHHHcCc
Confidence 357999999999999999999998766431 23444443321 2233444455555553
No 293
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.79 E-value=0.029 Score=48.64 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=39.5
Q ss_pred EEeCCCCCCc--cCchhhccccccceecccccccccccChhhhhcCcccceeecccccc
Q 002939 413 ILSLQGCDIE--HLPREIGQLTQLKLLDLSYCFELKVIAPNVLSNLSQLEELYMATCCI 469 (864)
Q Consensus 413 ~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 469 (864)
.++-++++++ .+|..+ -.+|++|+|++|. ++.++++.|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 5666677776 777543 2367888888886 7888877778888888888887765
No 294
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.77 E-value=0.021 Score=51.79 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=25.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
.+++++|.|+.|+||||++.++......+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 46799999999999999999999887643
No 295
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.76 E-value=0.017 Score=54.40 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
+..+++|.|++|+||||+++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999875
No 296
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.75 E-value=0.015 Score=53.74 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.+|+|+|+.|+||||+++.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988753
No 297
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.74 E-value=0.017 Score=53.78 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 002939 17 SIIGMYGMGGVGKTTLVKEVAR 38 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~ 38 (864)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4799999999999999999987
No 298
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.72 E-value=0.019 Score=54.16 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
.+|+|.|++|+||||+|+.+......
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999998763
No 299
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.66 E-value=0.19 Score=50.86 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=36.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHH
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQ 70 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~ 70 (864)
...+++|.|++|+|||||++.++....... -..++|+.... ...++.+.+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCcC--CHHHHHHHHHHH
Confidence 346999999999999999999998876431 11466776543 344555554443
No 300
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.65 E-value=0.016 Score=55.15 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 301
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.62 E-value=0.018 Score=53.53 Aligned_cols=26 Identities=46% Similarity=0.569 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.++|.|.|++|+||||+|+.++....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999998753
No 302
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.60 E-value=0.021 Score=54.58 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
..++|+|.|+.|+||||+++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457999999999999999999988654
No 303
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.55 E-value=0.19 Score=50.60 Aligned_cols=39 Identities=28% Similarity=0.205 Sum_probs=30.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE 56 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 56 (864)
.++++++|.+|+||||++..++...... -..+.+++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 4699999999999999999999887644 23466777654
No 304
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.55 E-value=0.023 Score=53.48 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998865
No 305
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.55 E-value=0.049 Score=47.22 Aligned_cols=51 Identities=25% Similarity=0.320 Sum_probs=25.4
Q ss_pred EEEEeccccc--cCCcccccCCCccEEEecCcccccc--ccccccCcccEEeCCCCC
Q 002939 368 VLLFIRMRLL--SLPSSIRLLTDLRTLCLDGCKLEDI--RIIGELKELEILSLQGCD 420 (864)
Q Consensus 368 ~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~l~~l--~~~~~l~~L~~L~l~~~~ 420 (864)
+++.++++++ .+|..+ -.+|++|+|++|.|+.+ ..|..+++|++|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4555555555 555432 13455555555555554 224445555555555543
No 306
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.54 E-value=0.019 Score=54.64 Aligned_cols=27 Identities=37% Similarity=0.481 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
..++|+|.|++|+||||+++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 347899999999999999999988753
No 307
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.52 E-value=0.024 Score=52.94 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
+...|+|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999886
No 308
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.52 E-value=0.21 Score=51.02 Aligned_cols=52 Identities=17% Similarity=0.117 Sum_probs=38.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQL 71 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l 71 (864)
..++.|.|.+|+||||+|..++...... -..++|++. +.+..++...+....
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 3699999999999999999999887653 245777665 445667766665543
No 309
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.48 E-value=0.024 Score=53.36 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
.+|+|.|++|+||||+|+.+......
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999987653
No 310
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.48 E-value=0.02 Score=53.03 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
+.|.|.|++|+||||+|+.++....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999998754
No 311
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.47 E-value=0.044 Score=51.22 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=25.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
...+|+|.|++|+||||+++.++......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999999987643
No 312
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.43 E-value=0.026 Score=53.79 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
+.++|.|.|++|+||||.|+.++....
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 568999999999999999999998764
No 313
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.41 E-value=0.023 Score=56.08 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
++|.|.|++|+||||+|+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 5799999999999999999998754
No 314
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.39 E-value=0.026 Score=53.26 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
+..+|+|.|++|+||||+|+.++...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998865
No 315
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.37 E-value=0.026 Score=53.67 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
.+..+|+|.|+.|+||||+|+.+++..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998764
No 316
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.36 E-value=0.035 Score=58.52 Aligned_cols=98 Identities=18% Similarity=0.151 Sum_probs=56.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcc-CCC-eEEEEEccCCC-ChHHHHHHHHHHhCCccccchhhhhccccccC-C
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDM-LFD-EVVFAEVSETP-DIGKIQGELADQLGMKFSQGEIADQRGMKFSQ-E 91 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~-~f~-~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~ 91 (864)
-+.++|.|.+|+|||+|+.++++.....+ +-+ .++++-+.+.. ...++.+++.+.=... ..-..... .
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~--------rtvvV~atsd 222 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAID--------RSVMFMNLAN 222 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGG--------GEEEEEEETT
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCcc--------ceEEEEECCC
Confidence 35688999999999999999998765421 111 57788777653 3555555554421000 00000000 1
Q ss_pred CChh------hHHHHHHHHHh--cCCeEEEEEcCCCch
Q 002939 92 SDVP------GRARKLYARLQ--KENKILVILDNIWED 121 (864)
Q Consensus 92 ~~~~------~~~~~~~~~l~--~~~~~LlvlDdv~~~ 121 (864)
+... ...-.+.++++ +++.+|+++||+...
T Consensus 223 ~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr~ 260 (465)
T 3vr4_D 223 DPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMTNY 260 (465)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence 1111 11234556666 389999999998543
No 317
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.36 E-value=0.019 Score=53.67 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
++++|.|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999998765
No 318
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.36 E-value=0.027 Score=52.00 Aligned_cols=25 Identities=32% Similarity=0.516 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
..+|+|.|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 319
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.34 E-value=0.027 Score=52.64 Aligned_cols=27 Identities=15% Similarity=0.353 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
+.++|+|.|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457999999999999999999997654
No 320
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.34 E-value=0.026 Score=53.80 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
..+++|.|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998764
No 321
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.31 E-value=0.012 Score=61.22 Aligned_cols=113 Identities=13% Similarity=0.106 Sum_probs=61.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
..+++|.|+.|.||||+++.+........ -..++.+.-.-.+.... ......+. .. .....
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~-~~~i~t~ed~~e~~~~~--------~~~~v~q~------~~----~~~~~ 183 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTK-YHHILTIEDPIEFVHES--------KKCLVNQR------EV----HRDTL 183 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHC-CCEEEEEESSCCSCCCC--------SSSEEEEE------EB----TTTBS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCC-CcEEEEccCcHHhhhhc--------cccceeee------ee----ccccC
Confidence 35999999999999999999988765431 12233322111111000 00000000 00 11122
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCchhccccccCCCCCCCCCcEEEEEeCChHHHh
Q 002939 96 GRARKLYARLQKENKILVILDNIWEDLDLEKVGVPSGNDWRGCKVLLTARDRHVLG 151 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~~ 151 (864)
...+.+.+.|. .+.=++++|++.+.+.++.+.... ..|..|++|+.....+.
T Consensus 184 ~~~~~La~aL~-~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 184 GFSEALRSALR-EDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CHHHHHHHHTT-SCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred CHHHHHHHHhh-hCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 34446667776 566788999998766555433221 12557888888765544
No 322
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.29 E-value=0.03 Score=54.30 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=28.8
Q ss_pred HHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 6 NVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 6 ~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
++.+.+...+..+|+|+|.+|+|||||+.++......
T Consensus 28 ~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 28 KNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 3344444456789999999999999999999987543
No 323
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.24 E-value=0.012 Score=52.40 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
.-|.|+|++|+|||++|+.+++..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CcEEEECCCCccHHHHHHHHHHhC
Confidence 457899999999999999988754
No 324
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.20 E-value=0.035 Score=55.91 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998764
No 325
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.16 E-value=0.023 Score=53.05 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.+|+|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999998754
No 326
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.12 E-value=0.028 Score=52.75 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 002939 17 SIIGMYGMGGVGKTTLVKEVAR 38 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~ 38 (864)
.+++|.|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 327
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.12 E-value=0.19 Score=50.74 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=30.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE 56 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 56 (864)
.++++|+|.+|+||||++..++...... -..+.+++...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~d~ 136 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADT 136 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCc
Confidence 4699999999999999999999887643 23466666543
No 328
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.08 E-value=0.031 Score=52.69 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
..+|+|.|++|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998765
No 329
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.07 E-value=0.032 Score=53.25 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
..+|+|.|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 330
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.07 E-value=0.034 Score=51.34 Aligned_cols=25 Identities=52% Similarity=0.624 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
.++|+|+.|+|||||++.++....+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999988753
No 331
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.07 E-value=0.026 Score=52.03 Aligned_cols=25 Identities=40% Similarity=0.429 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.+|+|.|+.|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998754
No 332
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.06 E-value=0.031 Score=53.10 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=23.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
.+..+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34579999999999999999999875
No 333
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.06 E-value=0.029 Score=54.22 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=28.8
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 5 KNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 5 ~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
+++.+.+...+.++|+|+|.+|+|||||+.++.....
T Consensus 19 ~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 19 EKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3344444445678999999999999999999998764
No 334
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.05 E-value=0.029 Score=53.44 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 002939 17 SIIGMYGMGGVGKTTLVKEVAR 38 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~ 38 (864)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 335
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.05 E-value=0.38 Score=51.55 Aligned_cols=42 Identities=31% Similarity=0.421 Sum_probs=30.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPD 59 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~ 59 (864)
+..+++|+|+.|+||||+++.++...... .+.+++.....+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccc
Confidence 34699999999999999999999876643 2344554444443
No 336
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.02 E-value=0.032 Score=53.08 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.|+|.|+.|+||||+|+.++....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 337
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.02 E-value=0.035 Score=51.89 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
...|+|.|+.|+||||+|+.+....
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 338
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.01 E-value=0.031 Score=53.57 Aligned_cols=27 Identities=37% Similarity=0.463 Sum_probs=23.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
+..+|+|.|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456999999999999999999998754
No 339
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.01 E-value=0.022 Score=53.15 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=18.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
..+|.|.|+.|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999987754
No 340
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.01 E-value=0.032 Score=55.44 Aligned_cols=26 Identities=38% Similarity=0.589 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
..+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 341
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.00 E-value=0.033 Score=52.13 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
...+|+|+|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999998863
No 342
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.95 E-value=0.034 Score=52.66 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
..+|+|.|++|+||||+|+.+.....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998754
No 343
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.94 E-value=0.14 Score=50.25 Aligned_cols=49 Identities=20% Similarity=0.305 Sum_probs=33.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHH
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGEL 67 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i 67 (864)
..++.|.|.+|+|||++|.+++.+...+. -..++|++... +..++.+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCceeecccC--CHHHHHHHH
Confidence 46999999999999999998776543221 23567766543 455554443
No 344
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.92 E-value=0.034 Score=53.98 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998865
No 345
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.90 E-value=0.1 Score=49.16 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
.|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999988754
No 346
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.89 E-value=0.027 Score=53.25 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.++++|+|+.|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 36899999999999999999988654
No 347
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.87 E-value=0.052 Score=55.50 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=25.2
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 13 DPDISIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 13 ~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
......|.|+|+.|+||||+++.++.....
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 345567999999999999999999987654
No 348
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.85 E-value=0.038 Score=50.60 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998754
No 349
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.84 E-value=0.039 Score=52.88 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
.+|+|.|+.|+||||+|+.+.......
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 589999999999999999999987643
No 350
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.80 E-value=0.034 Score=50.85 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=27.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEc
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEV 54 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~ 54 (864)
+++++|+|+.|+|||||++.+..-......-.+.+.++.
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 368999999999999999999988765421134555443
No 351
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.80 E-value=0.036 Score=52.12 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
..+|+|.|+.|+||||+|+.+.....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988753
No 352
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=93.79 E-value=0.2 Score=54.12 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=39.3
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC-ChHHHHHH
Q 002939 7 VQNALLD-PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP-DIGKIQGE 66 (864)
Q Consensus 7 i~~~l~~-~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~ 66 (864)
.++.|.- .+-+.++|.|.+|+|||+|+.++++... -+.++|+-+.+.. ...+++++
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHH
Confidence 3444442 3447899999999999999999987633 4678898888763 34444333
No 353
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.78 E-value=0.039 Score=54.33 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
+..+|+|.|+.|+||||+++.++....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356999999999999999999997753
No 354
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.78 E-value=0.04 Score=53.16 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
+...|+|.|++|+||||+|+.++....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999988753
No 355
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.78 E-value=0.036 Score=52.89 Aligned_cols=25 Identities=40% Similarity=0.623 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
...+|+|+|++|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3469999999999999999998765
No 356
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.77 E-value=0.038 Score=52.38 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
..+|+|.|++|+||||+|+.+.....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998763
No 357
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.76 E-value=0.48 Score=51.36 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=28.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEcc
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVS 55 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~ 55 (864)
+.++|.|+|.+|+||||++.+++.....++ ..+..|+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G--~kVllVd~D 138 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKG--WKTCLICAD 138 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEecc
Confidence 356999999999999999999998876532 235556653
No 358
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.69 E-value=0.16 Score=62.98 Aligned_cols=90 Identities=21% Similarity=0.239 Sum_probs=58.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
.+++.|+|++|+||||+|.+++...... -..++|++.....+.. .++.++.+... .......+..
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~~~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~--------L~i~~~~~~e 447 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDN--------LLCSQPDTGE 447 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH-----HHHHTTCCGGG--------CEEECCSSHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchHHH-----HHHHcCCCHHH--------eEEcCCCCHH
Confidence 4799999999999999999998886654 3468999988776653 25566654321 1111223344
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCc
Q 002939 96 GRARKLYARLQKENKILVILDNIWE 120 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~ 120 (864)
+..+.+.....+.+.-+||+|-+..
T Consensus 448 ~~l~~l~~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 448 QALEICDALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCSTT
T ss_pred HHHHHHHHHHHhcCCCEEEECCHHH
Confidence 4444444333335556999998753
No 359
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.66 E-value=0.03 Score=51.45 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVA 37 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~ 37 (864)
..+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999643
No 360
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.65 E-value=0.039 Score=53.56 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
...|+|.|++|+||||+|+.++...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999865
No 361
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.65 E-value=0.084 Score=53.73 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=32.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE 56 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 56 (864)
++.+||+|+|-||+||||.+..++.-....+ ..+.-|++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G--kkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 3568999999999999999999888776542 3577888874
No 362
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.65 E-value=0.042 Score=51.73 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
+|+|.|+.|+||||+|+.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999997653
No 363
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.64 E-value=0.036 Score=52.81 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 002939 17 SIIGMYGMGGVGKTTLVKEVAR 38 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~ 38 (864)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 364
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.62 E-value=0.045 Score=52.42 Aligned_cols=32 Identities=22% Similarity=0.197 Sum_probs=26.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCe
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDE 48 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~ 48 (864)
..+|+|.|+.|+||||+|+.+....... .++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN-NVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999876543 3454
No 365
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.62 E-value=0.047 Score=52.40 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=26.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCe
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDE 48 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~ 48 (864)
..+|+|.|+.|+||||+|+.+....... .++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~-~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA-GHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999887543 3444
No 366
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.61 E-value=0.054 Score=57.03 Aligned_cols=97 Identities=18% Similarity=0.251 Sum_probs=55.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhc--------cCCC-eEEEEEccCCC-ChHHHHHHHHHHhCCccccchhhhhcc
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKD--------MLFD-EVVFAEVSETP-DIGKIQGELADQLGMKFSQGEIADQRG 85 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~--------~~f~-~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~ 85 (864)
-+.++|.|.+|+|||+|+.++++..... ++-+ .++++-+.+.. ...++.+++.+. +. .+..-
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~-g~-------~~rtv 218 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERT-GA-------LSRSV 218 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHT-SG-------GGGEE
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhc-cc-------ccceE
Confidence 4578899999999999999998876542 1122 56787777653 355555554432 10 00000
Q ss_pred c--cccCCCChhh-----HHHHHHHHHh--cCCeEEEEEcCCCc
Q 002939 86 M--KFSQESDVPG-----RARKLYARLQ--KENKILVILDNIWE 120 (864)
Q Consensus 86 ~--~~~~~~~~~~-----~~~~~~~~l~--~~~~~LlvlDdv~~ 120 (864)
. ...+...... ..-.+.++++ +++.+|+++||+..
T Consensus 219 vv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 219 LFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp EEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 0 0001111111 1234556666 38999999999854
No 367
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.61 E-value=0.042 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
.|+|.|++|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998875
No 368
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.60 E-value=0.048 Score=57.84 Aligned_cols=98 Identities=17% Similarity=0.189 Sum_probs=57.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccC--CCeEEEEEccCCC-ChHHHHHHHHHHhCCccccchhhhhccccccC-C
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDML--FDEVVFAEVSETP-DIGKIQGELADQLGMKFSQGEIADQRGMKFSQ-E 91 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~ 91 (864)
-+.++|.|.+|+|||+|+.+++++....+. -+.++++-+.+.. ...++.+++.+.=... ..-..... +
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~--------rtvvV~~tsd 223 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALE--------RAVVFLNLAD 223 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGG--------GEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCcc--------ceEEEEECCC
Confidence 457888999999999999999998764321 1467788887654 3556665555431100 00000000 1
Q ss_pred CCh------hhHHHHHHHHHh--cCCeEEEEEcCCCch
Q 002939 92 SDV------PGRARKLYARLQ--KENKILVILDNIWED 121 (864)
Q Consensus 92 ~~~------~~~~~~~~~~l~--~~~~~LlvlDdv~~~ 121 (864)
+.. ....-.+.++++ +++.+|+++||+...
T Consensus 224 ~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR~ 261 (469)
T 2c61_A 224 DPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNY 261 (469)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHHHH
Confidence 111 112233455555 489999999997443
No 369
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.56 E-value=0.032 Score=64.04 Aligned_cols=128 Identities=13% Similarity=0.222 Sum_probs=66.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
.+-|.++|++|+|||.+|+++++..... ++.++. .+ +.... .....
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~~----~~----l~s~~-------------------vGese 556 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIKG----PE----LLTMW-------------------FGESE 556 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECCH----HH----HHTTT-------------------CSSCH
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCc-------eEEecc----ch----hhccc-------------------cchHH
Confidence 4578899999999999999999986532 222221 11 11110 11123
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCCchhc----------------cccccCCCCC-CCCCcEEEE-EeCChH-----HHhh
Q 002939 96 GRARKLYARLQKENKILVILDNIWEDLD----------------LEKVGVPSGN-DWRGCKVLL-TARDRH-----VLGS 152 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~~-~~~gs~Iiv-TtR~~~-----v~~~ 152 (864)
.....+++..++....+|+||+++..-. ...+...+.. ......++| ||-.+. +...
T Consensus 557 ~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRp 636 (806)
T 3cf2_A 557 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRP 636 (806)
T ss_dssp HHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHST
T ss_pred HHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCC
Confidence 3456666666667889999999864310 1111111110 111223444 443332 2211
Q ss_pred cC-CceEEcCCCCHHHHHHHHHHhhC
Q 002939 153 IG-SKTFQIDVLNEEEAWTLFKKMTG 177 (864)
Q Consensus 153 ~~-~~~~~l~~L~~~e~~~l~~~~~~ 177 (864)
.+ ...+.+..-+.++-.++|+.+..
T Consensus 637 gRfd~~i~v~lPd~~~R~~il~~~l~ 662 (806)
T 3cf2_A 637 GRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp TTSCCEEEC-----CHHHHTTTTTSS
T ss_pred CcceEEEEECCcCHHHHHHHHHHHhc
Confidence 12 57777877777777888887764
No 370
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.54 E-value=0.18 Score=62.64 Aligned_cols=90 Identities=21% Similarity=0.228 Sum_probs=65.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCCh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDV 94 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (864)
+-++|-|+|+.|+||||||.++....... =..++|+++.+..+.. .++.+|.+... ......+..
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~-----~~~~~Gv~~~~--------l~~~~p~~~ 1494 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDN--------LLCSQPDTG 1494 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH-----HHHHTTCCGGG--------CEEECCSSH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHH-----HHHHcCCCHHH--------eEEeCCCcH
Confidence 34799999999999999999998776554 3568999998877765 37888876552 222223444
Q ss_pred hhHHHHHHHHHhcCCeEEEEEcCCC
Q 002939 95 PGRARKLYARLQKENKILVILDNIW 119 (864)
Q Consensus 95 ~~~~~~~~~~l~~~~~~LlvlDdv~ 119 (864)
++.++.+..-++.+.--+||+|-|.
T Consensus 1495 e~~l~~~~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1495 EQALEICDALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHHHHHHHHHTCCSEEEESCST
T ss_pred HHHHHHHHHHHHcCCCCEEEEccHH
Confidence 5556666666666677799999874
No 371
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.54 E-value=0.04 Score=53.24 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
+...|+|.|++|+||||+|+.++....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446799999999999999999998764
No 372
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.50 E-value=0.047 Score=53.95 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
...+|.|.|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999988753
No 373
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.50 E-value=0.3 Score=51.73 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=29.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEcc
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVS 55 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~ 55 (864)
.++|.++|++|+||||++..++.....+ -..+..+++.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D 135 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAAD 135 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeecc
Confidence 5699999999999999999999887654 2345666654
No 374
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.50 E-value=0.049 Score=49.06 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
....+++|.|+.|+|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344699999999999999999999876
No 375
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.44 E-value=0.099 Score=53.16 Aligned_cols=43 Identities=23% Similarity=0.189 Sum_probs=30.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE 56 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 56 (864)
.+..+|+|.|+.|+|||||++.+..-......-..+.+|....
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~ 130 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDG 130 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCc
Confidence 4457999999999999999999988765321112366666543
No 376
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.44 E-value=0.02 Score=53.31 Aligned_cols=85 Identities=12% Similarity=0.053 Sum_probs=62.6
Q ss_pred hhcCCCCceEEEEeccccc-----cCCcccccCCCccEEEecCcccccc------ccccccCcccEEeCCCCCC---c--
Q 002939 359 IFMGMPKLKVLLFIRMRLL-----SLPSSIRLLTDLRTLCLDGCKLEDI------RIIGELKELEILSLQGCDI---E-- 422 (864)
Q Consensus 359 ~~~~l~~Lr~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~l~~l------~~~~~l~~L~~L~l~~~~i---~-- 422 (864)
.+...+.|+.|+|++|.+. .+...+..-+.|+.|+|++|.|..- ..+..-+.|++|+|+++.. .
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 3567788999999999887 3445556668899999999998763 4456667899999987633 3
Q ss_pred ---cCchhhccccccceecccccc
Q 002939 423 ---HLPREIGQLTQLKLLDLSYCF 443 (864)
Q Consensus 423 ---~lp~~~~~l~~L~~L~l~~~~ 443 (864)
.+...+..-+.|+.|+++.+.
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHhCCCcCeEeccCCC
Confidence 233445556789999998764
No 377
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.43 E-value=0.046 Score=52.10 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
+..+++|.|+.|+|||||++.+..-..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346999999999999999999988753
No 378
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.40 E-value=0.045 Score=54.08 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.+..+|+|.|+.|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456899999999999999999988654
No 379
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.39 E-value=0.048 Score=53.63 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
...+|+|.|+.|+||||+++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44699999999999999999998864
No 380
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.36 E-value=0.047 Score=52.46 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
.|+|.|++|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 381
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.36 E-value=0.049 Score=52.26 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
...+++|.|+.|+|||||++.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 346999999999999999999998754
No 382
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.35 E-value=0.18 Score=63.38 Aligned_cols=89 Identities=21% Similarity=0.241 Sum_probs=57.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhhhhccccccCCCChh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESDVP 95 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (864)
.+++.|+|++|+||||+|.+++...... -..++|++.....+.. .++.++.... .....+..+..
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~--------~L~I~~~~~~e 447 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDID--------NLLCSQPDTGE 447 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHH-----HHHHTTCCTT--------TCEEECCSSHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHH-----HHHHcCCCHH--------HeEEeCCCCHH
Confidence 4699999999999999999999887643 2468899888776643 2555654322 01112233444
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCC
Q 002939 96 GRARKLYARLQKENKILVILDNIW 119 (864)
Q Consensus 96 ~~~~~~~~~l~~~~~~LlvlDdv~ 119 (864)
+..+.+.+...+.+.-+||+|-+.
T Consensus 448 ~il~~~~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 448 QALEICDALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCGG
T ss_pred HHHHHHHHHHHhcCCcEEEECCHH
Confidence 444444433333556699999874
No 383
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.35 E-value=0.04 Score=52.99 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998865
No 384
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.33 E-value=0.051 Score=53.61 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
..+|+|.|+.|+||||+++.++...
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 4699999999999999999999764
No 385
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.32 E-value=0.054 Score=53.11 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
+..+|+|.|++|+||||+|+.+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999775
No 386
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.31 E-value=0.08 Score=53.59 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
+..+++|+|++|+||||+++.++.-...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3579999999999999999999987664
No 387
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.25 E-value=0.13 Score=54.86 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
...+|.|+|++|+||||+|+.++.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999988754
No 388
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.19 E-value=0.052 Score=51.54 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
..+|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998865
No 389
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.18 E-value=0.11 Score=55.15 Aligned_cols=51 Identities=14% Similarity=0.235 Sum_probs=35.0
Q ss_pred CccEEEEEcCCCCcHHHHH-HHHHHHhhhccCCC-eEEEEEccCCC-ChHHHHHHHHH
Q 002939 15 DISIIGMYGMGGVGKTTLV-KEVARRAKKDMLFD-EVVFAEVSETP-DIGKIQGELAD 69 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa-~~~~~~~~~~~~f~-~~~~v~~~~~~-~~~~~~~~i~~ 69 (864)
+-+.++|.|.+|+|||+|| ..+.+. . .-+ .++|+-+.+.. .+.++.+++.+
T Consensus 161 rGQR~~Ifg~~g~GKT~l~l~~I~n~-~---~~dv~~V~~~IGeR~~ev~e~~~~l~~ 214 (513)
T 3oaa_A 161 RGQRELIIGDRQTGKTALAIDAIINQ-R---DSGIKCIYVAIGQKASTISNVVRKLEE 214 (513)
T ss_dssp TTCBCEEEESSSSSHHHHHHHHHHTT-S---SSSCEEEEEEESCCHHHHHHHHHHHHH
T ss_pred cCCEEEeecCCCCCcchHHHHHHHhh-c---cCCceEEEEEecCChHHHHHHHHHHhh
Confidence 3468899999999999996 456553 2 234 47888888764 35556555544
No 390
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.11 E-value=0.44 Score=51.34 Aligned_cols=52 Identities=13% Similarity=-0.001 Sum_probs=37.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHH
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQ 70 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~ 70 (864)
..++.|.|.+|+||||+|..++....... -..++|++.. .+..++...+...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHHH
Confidence 46999999999999999999998876431 2357787664 4456666666543
No 391
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.11 E-value=0.035 Score=53.24 Aligned_cols=25 Identities=32% Similarity=0.605 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
+|+|.|+.|+||||+|+.+......
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 7899999999999999999988754
No 392
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.06 E-value=0.099 Score=47.85 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
.+++++|.|+.|+||||++..+......
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 3579999999999999999999987653
No 393
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.04 E-value=0.058 Score=49.96 Aligned_cols=27 Identities=22% Similarity=0.253 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
..+|+|.|+.|+||||+++.+......
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999999999987643
No 394
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.02 E-value=0.13 Score=53.06 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=36.9
Q ss_pred HHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhh--hccCCCeEEEEEccCCC
Q 002939 9 NALLDPDISIIGMYGMGGVGKTTLVKEVARRAK--KDMLFDEVVFAEVSETP 58 (864)
Q Consensus 9 ~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~--~~~~f~~~~~v~~~~~~ 58 (864)
.++.....+++.+.|.||+||||+|..++.... .. -..+.-|+.....
T Consensus 11 ~~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~--g~~vllid~D~~~ 60 (348)
T 3io3_A 11 SIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQP--NEQFLLISTDPAH 60 (348)
T ss_dssp HHHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECCSSC
T ss_pred HHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECCCCC
Confidence 445556678999999999999999999998876 33 2457788877543
No 395
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.01 E-value=0.062 Score=50.86 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
+|.|.|++|+||+|.|+.++....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998764
No 396
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.99 E-value=0.11 Score=53.09 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=30.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE 56 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 56 (864)
.++|+|+|++|+||||++..++...... -..+.+++...
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~D~ 143 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAADT 143 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 4699999999999999999999877643 23466666543
No 397
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.95 E-value=0.056 Score=50.40 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.+++|+|+.|+||||+++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998765
No 398
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.95 E-value=0.077 Score=50.71 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=24.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
....+|+|.|+.|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4457999999999999999999998765
No 399
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.93 E-value=0.064 Score=51.67 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
..+|+|.|++|+||||+|+.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999988753
No 400
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.89 E-value=0.12 Score=52.42 Aligned_cols=42 Identities=21% Similarity=0.119 Sum_probs=29.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSE 56 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 56 (864)
+..+|+|.|+.|+||||+++.+..-......-..+..+....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 345999999999999999999987654211112355666554
No 401
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.88 E-value=0.057 Score=54.22 Aligned_cols=23 Identities=22% Similarity=0.689 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHH
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVA 37 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~ 37 (864)
+..+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999998
No 402
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.82 E-value=0.055 Score=52.03 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
...|+|.|++|+||||+|+.++....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998763
No 403
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=92.82 E-value=0.14 Score=54.73 Aligned_cols=99 Identities=13% Similarity=0.183 Sum_probs=54.9
Q ss_pred CccEEEEEcCCCCcHHHHH-HHHHHHhhh----ccCCC-eEEEEEccCCC-ChHHHHHHHHHHhCCccccchhhhhcccc
Q 002939 15 DISIIGMYGMGGVGKTTLV-KEVARRAKK----DMLFD-EVVFAEVSETP-DIGKIQGELADQLGMKFSQGEIADQRGMK 87 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa-~~~~~~~~~----~~~f~-~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 87 (864)
+-+.++|.|.+|+|||+|| .++.+.... .++-+ .++|+-+.+.. .+.++.+.+...=... ...+.
T Consensus 161 rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~--------~tvvV 232 (510)
T 2ck3_A 161 RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMK--------YTIVV 232 (510)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGG--------GEEEE
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcc--------cceEE
Confidence 3468899999999999995 566665542 11234 47888888764 3555555554421110 00000
Q ss_pred ccC-CCChh-h-----HHHHHHHHHh-cCCeEEEEEcCCCch
Q 002939 88 FSQ-ESDVP-G-----RARKLYARLQ-KENKILVILDNIWED 121 (864)
Q Consensus 88 ~~~-~~~~~-~-----~~~~~~~~l~-~~~~~LlvlDdv~~~ 121 (864)
... .+... . ..-.+-++++ +++.+|+++||+...
T Consensus 233 ~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 274 (510)
T 2ck3_A 233 SATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQ 274 (510)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHH
Confidence 001 11111 1 1223444444 479999999998543
No 404
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.81 E-value=0.41 Score=52.63 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=38.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHH
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQ 70 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~ 70 (864)
..++.|.|.+|+||||+|.+++.....+. -..++|++... +..++...++..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHHHHH
Confidence 36999999999999999999998876431 13577877644 466676665443
No 405
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.77 E-value=0.068 Score=51.41 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVAR 38 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~ 38 (864)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
No 406
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.73 E-value=0.056 Score=52.94 Aligned_cols=26 Identities=38% Similarity=0.344 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
..+|+|+|+.|+||||+++.++....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999998754
No 407
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.73 E-value=0.12 Score=55.09 Aligned_cols=95 Identities=13% Similarity=0.184 Sum_probs=53.4
Q ss_pred CccEEEEEcCCCCcHHHHH-HHHHHHhhhccCCCe-EEEEEccCCC-ChHHHHHHHHHHhCCccccchhhhhccccccC-
Q 002939 15 DISIIGMYGMGGVGKTTLV-KEVARRAKKDMLFDE-VVFAEVSETP-DIGKIQGELADQLGMKFSQGEIADQRGMKFSQ- 90 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa-~~~~~~~~~~~~f~~-~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~- 90 (864)
+-+.++|.|.+|+|||+|| .++.+... -+. ++|+-+.+.. ...++.+.+.+.=.... ..+....
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~--------tvvV~ata 228 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDY--------TIVVTASA 228 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTT--------EEEEEECT
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcce--------eEEEEECC
Confidence 3468899999999999996 46666542 453 5788887754 35555555544211110 0000001
Q ss_pred CCChh-h-----HHHHHHHHHh-cCCeEEEEEcCCCch
Q 002939 91 ESDVP-G-----RARKLYARLQ-KENKILVILDNIWED 121 (864)
Q Consensus 91 ~~~~~-~-----~~~~~~~~l~-~~~~~LlvlDdv~~~ 121 (864)
.+... . ..-.+-++++ +++.+|+++||+...
T Consensus 229 d~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~ 266 (502)
T 2qe7_A 229 SEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQ 266 (502)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence 11111 1 1123444444 479999999998543
No 408
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.72 E-value=0.076 Score=51.68 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
...|.|.|+.|+||||+|+.++....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998864
No 409
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.71 E-value=0.12 Score=52.26 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=24.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
..+++|+|+.|+||||+++.++.....
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 369999999999999999999987664
No 410
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.70 E-value=0.11 Score=55.55 Aligned_cols=95 Identities=12% Similarity=0.157 Sum_probs=53.3
Q ss_pred CccEEEEEcCCCCcHHHHH-HHHHHHhhhccCCCe-EEEEEccCCC-ChHHHHHHHHHHhCCccccchhhhhccccccCC
Q 002939 15 DISIIGMYGMGGVGKTTLV-KEVARRAKKDMLFDE-VVFAEVSETP-DIGKIQGELADQLGMKFSQGEIADQRGMKFSQE 91 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa-~~~~~~~~~~~~f~~-~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 91 (864)
+-+.++|.|.+|+|||+|| .++++... .+. ++|+-+.+.. .+.++.+.+.+.=.. +...+.....
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m--------~rtvvV~ata 241 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQYGAM--------EYTTVVVASA 241 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHTTGG--------GGEEEEEECT
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhCCCc--------ceeEEEEECC
Confidence 3468999999999999996 46666542 454 5788887764 355555555432110 0000000111
Q ss_pred -CChh-h-----HHHHHHHHHh-cCCeEEEEEcCCCch
Q 002939 92 -SDVP-G-----RARKLYARLQ-KENKILVILDNIWED 121 (864)
Q Consensus 92 -~~~~-~-----~~~~~~~~l~-~~~~~LlvlDdv~~~ 121 (864)
+... . ..-.+-++++ +++.+|+++||+...
T Consensus 242 d~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr~ 279 (515)
T 2r9v_A 242 SDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSKH 279 (515)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHHH
Confidence 1111 1 1223444454 479999999998543
No 411
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.68 E-value=0.071 Score=50.77 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
++|+|.|+.|+||||+|+.+.....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3899999999999999999988754
No 412
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.66 E-value=0.089 Score=54.03 Aligned_cols=50 Identities=26% Similarity=0.261 Sum_probs=38.4
Q ss_pred HHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCCh
Q 002939 9 NALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDI 60 (864)
Q Consensus 9 ~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~ 60 (864)
..+.+...+++.+.|-||+||||+|..++...... -..+.-|++....+.
T Consensus 9 ~~l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~--g~~vllid~D~~~~l 58 (334)
T 3iqw_A 9 SILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKV--RRSVLLLSTDPAHNL 58 (334)
T ss_dssp HHHHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTS--SSCEEEEECCSSCHH
T ss_pred HHhcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhC--CCcEEEEECCCCCCh
Confidence 44555667899999999999999999999887654 245778887755433
No 413
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.65 E-value=0.53 Score=50.52 Aligned_cols=51 Identities=14% Similarity=0.079 Sum_probs=37.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHHHH
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQ 70 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~ 70 (864)
..++.|.|.+|+||||+|.+++.....+ -..++|++.-. +..++...+...
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHHH
Confidence 4699999999999999999999987654 23577765543 445555555543
No 414
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.65 E-value=0.071 Score=51.09 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999876
No 415
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.61 E-value=0.073 Score=51.38 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 416
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.61 E-value=0.069 Score=54.45 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.+|+|.|+.|+||||||+.++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998754
No 417
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.60 E-value=0.16 Score=51.86 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=34.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPD 59 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~ 59 (864)
.+.++|+|+|-||+||||+|..++.-.... -..+..|++....+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~--G~~VlliD~D~~~~ 82 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQIGCDPKHD 82 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEESSSCC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC--CCeEEEEeCCCCCC
Confidence 356899999999999999999999887654 23577888775443
No 418
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.57 E-value=0.13 Score=50.37 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=28.7
Q ss_pred HHHHHHhcCC-C-ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 5 KNVQNALLDP-D-ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 5 ~~i~~~l~~~-~-~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
.-+..|+... . ...|.++|++|+|||.+|..+++..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3456777754 2 4589999999999999999999863
No 419
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.48 E-value=0.047 Score=53.10 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=16.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH-HHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVA-RRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~-~~~ 40 (864)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 653
No 420
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.46 E-value=0.47 Score=51.29 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=36.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChHHHHHHHH
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIGKIQGELA 68 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~ 68 (864)
..++.|.|.+|+||||+|..++....... -..++|++... +..++...+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 36999999999999999999998876431 13577876543 4456665554
No 421
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.46 E-value=0.21 Score=52.00 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=29.0
Q ss_pred HHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 6 NVQNALL--DPDISIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 6 ~i~~~l~--~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
++.+.+. ..+..+|+|+|.+|+||||++..+......
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4444444 356789999999999999999999887654
No 422
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.43 E-value=0.075 Score=53.80 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
++|+|.|+.|+||||||+.++....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 423
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.38 E-value=0.078 Score=53.05 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
.++|+|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998764
No 424
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.35 E-value=0.077 Score=51.64 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
.. .+++|.|+.|+|||||++.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 799999999999999999998653
No 425
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.30 E-value=0.041 Score=55.45 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=27.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP 58 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~ 58 (864)
+..+|+|.|+.|+||||+|+.+....... .+ .+..++...-+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~-~~-~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRRE-GV-KAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHH-TC-CEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhc-CC-CeeEeecchhh
Confidence 45689999999999999999998865422 12 24556655443
No 426
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.28 E-value=0.15 Score=49.34 Aligned_cols=28 Identities=39% Similarity=0.465 Sum_probs=24.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
...+|+|.|+.|+||||+++.+......
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999999998764
No 427
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=92.25 E-value=0.14 Score=52.86 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.-+.++|++|+|||++|+.+++...
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4789999999999999999998764
No 428
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.17 E-value=0.11 Score=54.46 Aligned_cols=26 Identities=38% Similarity=0.385 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.+.|.++|++|+|||++|+.+++...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998863
No 429
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.13 E-value=0.19 Score=49.56 Aligned_cols=112 Identities=16% Similarity=0.147 Sum_probs=58.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC-CChHHHHHHHHHHhCCccccchhhhhccccccCCCC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET-PDIGKIQGELADQLGMKFSQGEIADQRGMKFSQESD 93 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 93 (864)
...+++|+|+.|.||||+++.+..-.... +.+.+++.-... +-... ... ...+. ..+ . +
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~-------~~~-~v~q~----~~g-----l-~ 83 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKH-------KKS-IVNQR----EVG-----E-D 83 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCC-------SSS-EEEEE----EBT-----T-T
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCC-------cce-eeeHH----HhC-----C-C
Confidence 44699999999999999999998865432 233443332111 00000 000 00000 000 0 1
Q ss_pred hhhHHHHHHHHHhcCCeEEEEEcCCCchhccccccCCCCCCCCCcEEEEEeCChHHH
Q 002939 94 VPGRARKLYARLQKENKILVILDNIWEDLDLEKVGVPSGNDWRGCKVLLTARDRHVL 150 (864)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~IivTtR~~~v~ 150 (864)
.......+.+.+.. +.=++++|+..+.+....+.... ..|.-|++||.+....
T Consensus 84 ~~~l~~~la~aL~~-~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 84 TKSFADALRAALRE-DPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp BSCHHHHHHHHHHH-CCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred HHHHHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 12234566666764 45578889996444332222111 2355788888776543
No 430
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.12 E-value=0.23 Score=47.09 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPD 59 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~ 59 (864)
.|.+.|.||+||||+|..++.....++ + .+.++++....+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G-~-~V~v~d~D~q~~ 47 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG-V-RVMAGVVETHGR 47 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT-C-CEEEEECCCTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC-C-CEEEEEeCCCCC
Confidence 588899999999999999998876542 3 345556654433
No 431
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.11 E-value=0.29 Score=47.28 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=28.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEE
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFA 52 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v 52 (864)
...|+|.|+.|+||||+++.+.+..... .+..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeee
Confidence 3689999999999999999999987654 35534333
No 432
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.11 E-value=0.086 Score=53.75 Aligned_cols=44 Identities=18% Similarity=0.069 Sum_probs=30.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET 57 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~ 57 (864)
.+..+|+|.|+.|+|||||++.+.........-..+.+++....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 34579999999999999999999886541000123556665543
No 433
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.01 E-value=0.11 Score=51.97 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
..++|+|.|+.|+||||||..++....
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 346899999999999999999998743
No 434
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.93 E-value=0.22 Score=54.15 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=31.0
Q ss_pred hHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 3 TLKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 3 ~~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
+++.+.+++.+.+ +.+.|.|.+|+||||++..+.......
T Consensus 33 av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 33 AFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 3455555666544 499999999999999999999887654
No 435
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.92 E-value=0.081 Score=51.38 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.-.+++|.|+.|+|||||++.++.-..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 346999999999999999999886543
No 436
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.91 E-value=0.08 Score=53.74 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
++|+|.|+.|+||||||..++...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 589999999999999999998764
No 437
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.79 E-value=0.15 Score=52.66 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=24.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
..+++|+|+.|+||||+++.++.....
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 469999999999999999999988764
No 438
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.78 E-value=0.34 Score=46.00 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
..|+|.|+.|+||||+++.+++.....
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999987754
No 439
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.72 E-value=0.079 Score=51.07 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
-.+++|+|+.|+|||||++.++.-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999988643
No 440
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.71 E-value=0.21 Score=46.29 Aligned_cols=27 Identities=22% Similarity=0.057 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
.++.++|+.|+||||++.+++.+...+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~ 30 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG 30 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 588999999999999998888776544
No 441
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=91.62 E-value=0.2 Score=53.86 Aligned_cols=39 Identities=23% Similarity=0.240 Sum_probs=32.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCC
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSET 57 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~ 57 (864)
+-+.++|.|.+|+|||+|+.++++... -+.++|+-+.+.
T Consensus 220 rGqr~~Ifg~~g~GKT~l~~~ia~~~~----~~v~V~~~iGER 258 (578)
T 3gqb_A 220 MGGTAAIPGPFGSGKSVTQQSLAKWSN----ADVVVYVGSGER 258 (578)
T ss_dssp TTCEEEECCCTTSCHHHHHHHHHHHSS----CSEEEEEEEEEC
T ss_pred CCCEEeeeCCCCccHHHHHHHHHhccC----CCEEEEEEeccc
Confidence 346899999999999999999987642 467889888876
No 442
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.52 E-value=0.074 Score=50.46 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
.+++|.|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999876
No 443
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.49 E-value=0.097 Score=50.92 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
-.+++|+|+.|+|||||++.++.-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4699999999999999999998754
No 444
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.35 E-value=0.29 Score=46.68 Aligned_cols=29 Identities=31% Similarity=0.404 Sum_probs=25.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
.+...|+|.|+.|+||||+++.+.+....
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 44579999999999999999999998765
No 445
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.33 E-value=0.1 Score=51.68 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
...+++|.|+.|+|||||++.++.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34699999999999999999988643
No 446
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.32 E-value=0.39 Score=45.65 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=26.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCe
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDE 48 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~ 48 (864)
...|+|.|+.|+||||+++.+.+..... .+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCc
Confidence 3589999999999999999999887654 3444
No 447
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.31 E-value=0.028 Score=65.69 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.+.+.++|++|+||||+|+.++....
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred CceeEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999999875
No 448
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=91.27 E-value=0.1 Score=55.74 Aligned_cols=48 Identities=10% Similarity=0.192 Sum_probs=32.4
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHHHhhhccCCC-eEEEEEccCCCC-hHHHHHHH
Q 002939 16 ISIIGMYGMGGVGKTTLV-KEVARRAKKDMLFD-EVVFAEVSETPD-IGKIQGEL 67 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa-~~~~~~~~~~~~f~-~~~~v~~~~~~~-~~~~~~~i 67 (864)
-+.++|.|.+|+|||+|| .++++... .+ .++|+-+.+... ..++.+.+
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~ 213 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNF 213 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHT
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHH
Confidence 467899999999999996 46666542 35 467888877543 33443333
No 449
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.25 E-value=0.14 Score=49.85 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45699999999999999999998864
No 450
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.19 E-value=0.11 Score=52.79 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 451
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.19 E-value=0.26 Score=49.75 Aligned_cols=41 Identities=20% Similarity=0.375 Sum_probs=32.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP 58 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~ 58 (864)
+++|+|.|-||+||||+|..++.-...+ -..+..|++....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~--G~rVlliD~D~q~ 42 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM--GKKVMIVGCDPKA 42 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEECSSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC--CCeEEEEecCCCC
Confidence 4788889999999999999999887654 2357778876543
No 452
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.17 E-value=0.12 Score=51.16 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
-.+++|+|+.|+|||||++.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999874
No 453
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.15 E-value=0.13 Score=51.75 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
.+..+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345799999999999999999999876
No 454
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.15 E-value=0.097 Score=52.07 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
-.+++|+|+.|+|||||++.++.-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 369999999999999999998864
No 455
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.13 E-value=0.11 Score=51.34 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
.-.+++|.|+.|+|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34699999999999999999988653
No 456
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.10 E-value=0.12 Score=50.81 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
-.+++|.|+.|+|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999874
No 457
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.08 E-value=0.13 Score=48.25 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
.-.|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998764
No 458
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.07 E-value=0.085 Score=48.77 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
.+.|.|.|++|+||||||.+++...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3679999999999999999998764
No 459
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.03 E-value=0.087 Score=50.18 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
-.+++|.|+.|+|||||++.++.-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999988653
No 460
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.03 E-value=0.14 Score=50.14 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
...|+|.|..|+||||+++.++....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999998763
No 461
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.97 E-value=0.13 Score=53.53 Aligned_cols=27 Identities=26% Similarity=0.187 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 14 PDISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 14 ~~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
...++++|+|+.|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445799999999999999999999754
No 462
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.97 E-value=0.26 Score=49.03 Aligned_cols=40 Identities=18% Similarity=0.377 Sum_probs=31.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCC
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETP 58 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~ 58 (864)
++|+|.|-||+||||+|..++.-...+ -..+..|++....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~--G~~VlliD~D~q~ 41 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM--GKTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEEECTTS
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC--CCcEEEEcCCCCC
Confidence 578889999999999999999887644 2357788876543
No 463
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.93 E-value=0.15 Score=54.27 Aligned_cols=38 Identities=26% Similarity=0.317 Sum_probs=29.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEcc
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVS 55 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~ 55 (864)
.++|.|+|.+|+||||++..++.....++ ..+..+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G--~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRG--LKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHH--CCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEecc
Confidence 46999999999999999999998776442 235666654
No 464
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.92 E-value=0.11 Score=50.73 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
-.+++|+|+.|+|||||++.++.-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3699999999999999999998653
No 465
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.89 E-value=0.14 Score=47.96 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
+...|+|+|.+|+|||||+.++.+.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999864
No 466
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.89 E-value=0.11 Score=50.28 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
-.+++|+|+.|+|||||++.++.-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3699999999999999999998754
No 467
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.88 E-value=0.11 Score=51.55 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
-.+++|+|+.|+|||||++.++.-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3699999999999999999998754
No 468
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.86 E-value=0.12 Score=50.84 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
.-.+++|.|+.|+|||||++.++.-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3469999999999999999998864
No 469
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.82 E-value=0.11 Score=51.28 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
-.+++|.|+.|+|||||++.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3699999999999999999988653
No 470
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.77 E-value=0.11 Score=50.79 Aligned_cols=25 Identities=40% Similarity=0.562 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
-.+++|+|+.|+|||||++.++.-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3699999999999999999987653
No 471
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.76 E-value=0.15 Score=45.95 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
+.|+|.|.+|+|||||+.++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999865
No 472
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.75 E-value=0.12 Score=50.43 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
.-.+++|+|+.|+|||||++.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3469999999999999999998864
No 473
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.71 E-value=0.15 Score=53.13 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
++|+|.|+.|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999998764
No 474
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.67 E-value=0.21 Score=50.60 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 4 LKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 4 ~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
++++.+.+.+ .++++.|+.|+|||||++.+. ..
T Consensus 156 i~~L~~~l~G---~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLEG---FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTTT---CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhccC---cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3445554442 589999999999999999998 53
No 475
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.67 E-value=0.5 Score=44.28 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAKKD 43 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~~~ 43 (864)
.|+|-|+.|+||||.++.+++....+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~ 27 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 47899999999999999999988765
No 476
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.64 E-value=0.13 Score=50.83 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
-.+++|+|+.|+|||||++.++.-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 369999999999999999998864
No 477
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=90.62 E-value=0.1 Score=54.57 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
..-|.|+|++|+|||++|+.+++...
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34599999999999999999998754
No 478
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.62 E-value=0.29 Score=46.31 Aligned_cols=42 Identities=21% Similarity=0.326 Sum_probs=32.3
Q ss_pred cEEEEE-cCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCCh
Q 002939 17 SIIGMY-GMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDI 60 (864)
Q Consensus 17 ~vi~i~-G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~ 60 (864)
++|+|+ +-||+||||+|..++.....+ -..+..+++....+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~--g~~vlliD~D~~~~~ 44 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRS--GYNIAVVDTDPQMSL 44 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCTTCHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEECCCCCCH
Confidence 678887 678899999999999987754 235788888755443
No 479
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.59 E-value=0.27 Score=48.67 Aligned_cols=38 Identities=32% Similarity=0.444 Sum_probs=28.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEcc
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVS 55 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~ 55 (864)
+..++.+.|.||+||||++..++.... .+ ..+.-++..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g--~~v~vvd~D 50 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DN--YKVAYVNLD 50 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TT--SCEEEEECC
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CC--CeEEEEeCC
Confidence 457889999999999999999998776 42 235555543
No 480
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.58 E-value=0.13 Score=54.34 Aligned_cols=35 Identities=17% Similarity=0.384 Sum_probs=26.4
Q ss_pred HHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHH
Q 002939 5 KNVQNALLD--PDISIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 5 ~~i~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
.++.++|.. ....+++|+|+.|+|||||.+.+..-
T Consensus 56 ~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 56 SAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred hhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 344444442 34469999999999999999999873
No 481
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.57 E-value=0.13 Score=51.11 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
-.+++|+|+.|+|||||++.++.-.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4699999999999999999988653
No 482
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.55 E-value=0.13 Score=51.51 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=29.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcc-C-------CCeEEEEEccC
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDM-L-------FDEVVFAEVSE 56 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~-~-------f~~~~~v~~~~ 56 (864)
-.++.|+|++|+|||||+..++....... . -..++|++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 36999999999999999999987554210 0 13467776654
No 483
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.49 E-value=0.12 Score=50.50 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
-.+++|+|+.|+|||||++.++.-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3689999999999999999988654
No 484
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.48 E-value=0.16 Score=47.96 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
-.|+|.|..|+|||||++.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 485
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.42 E-value=0.14 Score=50.84 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
.-.+++|+|+.|+|||||++.++.-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3469999999999999999998864
No 486
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.26 E-value=0.13 Score=50.50 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
..+++|.|+.|+|||||++.++.-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998754
No 487
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.25 E-value=0.16 Score=50.45 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 18 IIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
.++|+|+.|+|||||.+.++.-..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998653
No 488
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.23 E-value=0.17 Score=46.03 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
..|+|.|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999753
No 489
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.14 E-value=0.13 Score=51.23 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
-.+++|+|+.|+|||||++.++.-..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 36899999999999999999986543
No 490
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.09 E-value=0.27 Score=45.90 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998753
No 491
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.94 E-value=0.28 Score=45.58 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 002939 4 LKNVQNALLDPDISIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 4 ~~~i~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
+.++.+ +.+.+.-.|+|+|.+|+|||||+.++...
T Consensus 5 ~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 5 FTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 456666 44555678999999999999999999854
No 492
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.94 E-value=0.18 Score=51.98 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAK 41 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 41 (864)
-.+++|.|+.|+|||||.+.++.-..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCC
Confidence 46999999999999999999987543
No 493
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.89 E-value=0.19 Score=54.48 Aligned_cols=28 Identities=11% Similarity=-0.123 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARRAKK 42 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 42 (864)
...+|++.|++|+||||+|+.++.....
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4468999999999999999999999764
No 494
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=89.88 E-value=0.3 Score=50.05 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=33.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEccCCCChH
Q 002939 16 ISIIGMYGMGGVGKTTLVKEVARRAKKDMLFDEVVFAEVSETPDIG 61 (864)
Q Consensus 16 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 61 (864)
.+++.+.|-||+||||+|..++.....+ -..+.-|+.....+..
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD~D~~~~l~ 57 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARS--GKKTLVISTDPAHSLS 57 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEECCSSCCHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHC--CCcEEEEeCCCCcCHH
Confidence 3677778999999999999999887654 3357778877655444
No 495
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.87 E-value=0.18 Score=46.62 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=26.3
Q ss_pred HHHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHH
Q 002939 4 LKNVQNALLD-PDISIIGMYGMGGVGKTTLVKEVAR 38 (864)
Q Consensus 4 ~~~i~~~l~~-~~~~vi~i~G~~G~GKTtLa~~~~~ 38 (864)
+.++.+.+.. .+...|+|+|.+|+|||||+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 5 FSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 3445554444 5567899999999999999988764
No 496
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=89.82 E-value=0.48 Score=49.70 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=31.9
Q ss_pred CCccEEEEEc-CCCCcHHHHHHHHHHHhhhccCCCeEEEEEcc
Q 002939 14 PDISIIGMYG-MGGVGKTTLVKEVARRAKKDMLFDEVVFAEVS 55 (864)
Q Consensus 14 ~~~~vi~i~G-~~G~GKTtLa~~~~~~~~~~~~f~~~~~v~~~ 55 (864)
.+.++|+|+| -||+||||+|..++.....+ -..+..+++.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~--g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANM--GKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhC--CCCEEEEECC
Confidence 3568999986 89999999999999887654 2358888876
No 497
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.74 E-value=0.14 Score=47.45 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 002939 18 IIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 18 vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
.|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998863
No 498
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.72 E-value=0.58 Score=51.69 Aligned_cols=97 Identities=18% Similarity=0.125 Sum_probs=0.0
Q ss_pred cEEEEEcCCCCcHHHHHHHH-HHHhhhccCCCeEEEEEccCCCChHHHHHHHHHHhCCccccchhh----------hhcc
Q 002939 17 SIIGMYGMGGVGKTTLVKEV-ARRAKKDMLFDEVVFAEVSETPDIGKIQGELADQLGMKFSQGEIA----------DQRG 85 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~-~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~----------~~~~ 85 (864)
.+++|.|+.|+|||||++.+ +.-.... -...+|++..+ ...-....++.++......... ....
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~--~~g~i~v~g~~---~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~ 114 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEF--DEPGVFVTFEE---TPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEG 114 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSS---CHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEEeC---CHHHHHHHHHHcCCChHHhhccCcEEEEecCcccch
Q ss_pred ccccCCCChhhHHHHHHHHHhcCCeEEEEEcCC
Q 002939 86 MKFSQESDVPGRARKLYARLQKENKILVILDNI 118 (864)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv 118 (864)
..........+...++...+..+++=++|+|.+
T Consensus 115 ~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~ 147 (525)
T 1tf7_A 115 QEVVGGFDLSALIERINYAIQKYRARRVSIDSV 147 (525)
T ss_dssp CSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECS
T ss_pred hhhhcccCHHHHHHHHHHHHHHcCCCEEEECCH
No 499
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.69 E-value=0.19 Score=46.60 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 002939 17 SIIGMYGMGGVGKTTLVKEVARRA 40 (864)
Q Consensus 17 ~vi~i~G~~G~GKTtLa~~~~~~~ 40 (864)
.+.+|+|+.|.|||||+.+++--.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999988754
No 500
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.66 E-value=0.13 Score=49.88 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 002939 15 DISIIGMYGMGGVGKTTLVKEVARR 39 (864)
Q Consensus 15 ~~~vi~i~G~~G~GKTtLa~~~~~~ 39 (864)
+..+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3469999999999999999998765
Done!