BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002940
(863 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P67912|HLDD_SALTY ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=hldD PE=3 SV=1
Length = 310
Score = 34.7 bits (78), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 757 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 809
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 810 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 855
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|P67913|HLDD_SALTI ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella typhi
GN=hldD PE=3 SV=1
Length = 310
Score = 34.7 bits (78), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 757 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 809
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 810 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 855
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|B4TZW1|HLDD_SALSV ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella
schwarzengrund (strain CVM19633) GN=hldD PE=3 SV=1
Length = 310
Score = 34.7 bits (78), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 757 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 809
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 810 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 855
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|B5BHZ3|HLDD_SALPK ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella paratyphi A
(strain AKU_12601) GN=hldD PE=3 SV=1
Length = 310
Score = 34.7 bits (78), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 757 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 809
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 810 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 855
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|A9MVL2|HLDD_SALPB ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella paratyphi B
(strain ATCC BAA-1250 / SPB7) GN=hldD PE=3 SV=1
Length = 310
Score = 34.7 bits (78), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 757 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 809
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 810 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 855
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|Q5PC05|HLDD_SALPA ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella paratyphi A
(strain ATCC 9150 / SARB42) GN=hldD PE=3 SV=1
Length = 310
Score = 34.7 bits (78), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 757 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 809
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 810 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 855
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|B4T9A3|HLDD_SALHS ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella heidelberg
(strain SL476) GN=hldD PE=3 SV=1
Length = 310
Score = 34.7 bits (78), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 757 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 809
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 810 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 855
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|B5EXC5|HLDD_SALA4 ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella agona
(strain SL483) GN=hldD PE=3 SV=1
Length = 310
Score = 34.7 bits (78), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 757 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 809
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 810 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 855
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|B4SXC1|HLDD_SALNS ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella newport
(strain SL254) GN=hldD PE=3 SV=1
Length = 310
Score = 34.7 bits (78), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 757 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 809
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 810 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 855
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|C0Q1V2|HLDD_SALPC ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella paratyphi C
(strain RKS4594) GN=hldD PE=3 SV=1
Length = 310
Score = 34.7 bits (78), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 757 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 809
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 810 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 855
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|Q57IC3|HLDD_SALCH ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella
choleraesuis (strain SC-B67) GN=hldD PE=3 SV=1
Length = 310
Score = 34.7 bits (78), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 757 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 809
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 810 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 855
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|B8CVJ3|HLDD_SHEPW ADP-L-glycero-D-manno-heptose-6-epimerase OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) GN=hldD PE=3 SV=1
Length = 317
Score = 34.3 bits (77), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 46/110 (41%), Gaps = 16/110 (14%)
Query: 760 SSVFHLVAGLDGGDRTVSLESETYKGCFVYT----AVNL---QSSESTKLGCISESTEAG 812
+ + L G+DG + L FVY VNL Q+SE + +
Sbjct: 192 NGICRLFEGVDGYENGQQLRD------FVYVEDVVKVNLWLWQNSEVSGIFNCGTGQAQS 245
Query: 813 FNNAASFVIE---KGLSEYHPISFVAKGANRNFLLAPLLSLRDESYTVYF 859
FN+ A+ VI KG EY P KGA +++ A L LR YT F
Sbjct: 246 FNDVANAVIAHHGKGAVEYIPFPDKLKGAYQSYTQADLTKLRAAGYTAEF 295
>sp|P32812|YGL1_GEOSE Uncharacterized protein in gldA 5'region (Fragment) OS=Geobacillus
stearothermophilus PE=4 SV=1
Length = 97
Score = 33.9 bits (76), Expect = 5.4, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 260 TYADNAEALRMTTWMVEYFYNRVQNVIKKYSIE-----RHWQTLNEEAGGMNDVLYKL 312
T+A+ E L+ W+ + ++RV N+IK IE + ++ N+E G+++ L +L
Sbjct: 22 TFAEYLEILKEKPWIAQSAHSRVYNMIKDAGIEEINGRKRYKFFNQEIFGLDEALERL 79
>sp|Q38VV4|SYFB_LACSS Phenylalanine--tRNA ligase beta subunit OS=Lactobacillus sakei
subsp. sakei (strain 23K) GN=pheT PE=3 SV=1
Length = 806
Score = 33.1 bits (74), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 16/136 (11%)
Query: 21 VSAAQAKECTNAYPELASHTFRSNLLSSKNESYIKQIHSHNDHLTPSDDSAWLSLMPRKI 80
+ AA A + T+AYPE+ + + + QIH T ++ L KI
Sbjct: 640 LQAAVAYQATDAYPEMHPGRTAAIYVGETFVGIVGQIHPKIAKATHLKETYIFELDLAKI 699
Query: 81 LREEEQDELFSWAMLYRKIKNPGQFKVP-------------ERSGEFLKEVSLHDVRLGS 127
L + Q + A + ++ +VP E+ G +L VSL DV GS
Sbjct: 700 LELQRQTIIAKPAPKFPEVTRDIALQVPEAITNADLVNAIKEKGGRYLVSVSLFDVYAGS 759
Query: 128 DSMHWRAQQTNLEYLL 143
H A + ++ Y L
Sbjct: 760 ---HIEAGEKSMAYTL 772
>sp|A9MKQ6|HLDD_SALAR ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella arizonae
(strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=hldD PE=3
SV=1
Length = 310
Score = 33.1 bits (74), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 757 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYTA----VNLQSSESTKLGCISEST-- 809
+ S FHL L+ G+ E SE +K FVY VNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLESGKSGIFNLGTGR 239
Query: 810 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 855
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 328,641,280
Number of Sequences: 539616
Number of extensions: 14034564
Number of successful extensions: 30704
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 30673
Number of HSP's gapped (non-prelim): 72
length of query: 863
length of database: 191,569,459
effective HSP length: 126
effective length of query: 737
effective length of database: 123,577,843
effective search space: 91076870291
effective search space used: 91076870291
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)