Query 002940
Match_columns 863
No_of_seqs 298 out of 924
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 13:49:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002940.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002940hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07944 DUF1680: Putative gly 100.0 2E-105 4E-110 932.0 46.8 488 122-635 1-520 (520)
2 COG3533 Uncharacterized protei 100.0 7E-101 1E-105 843.3 32.2 483 115-639 9-505 (589)
3 PF05270 AbfB: Alpha-L-arabino 99.7 4.7E-17 1E-21 158.9 8.6 110 727-846 2-116 (142)
4 PF05270 AbfB: Alpha-L-arabino 99.3 5E-12 1.1E-16 123.8 9.7 124 678-821 13-142 (142)
5 cd00249 AGE AGE domain; N-acyl 98.5 2.6E-06 5.7E-11 95.9 16.0 286 180-482 53-374 (384)
6 PF07470 Glyco_hydro_88: Glyco 97.8 0.0004 8.7E-09 77.5 15.8 228 180-444 25-287 (336)
7 cd00249 AGE AGE domain; N-acyl 97.6 0.00049 1.1E-08 77.6 13.3 183 182-373 117-325 (384)
8 PF03663 Glyco_hydro_76: Glyco 97.6 0.00013 2.9E-09 82.8 8.7 174 182-373 38-244 (370)
9 PF07944 DUF1680: Putative gly 97.5 0.00057 1.2E-08 81.0 12.3 237 198-442 6-268 (520)
10 COG1331 Highly conserved prote 97.4 0.0092 2E-07 71.4 19.4 253 166-444 199-573 (667)
11 PF03663 Glyco_hydro_76: Glyco 97.2 0.0019 4E-08 73.6 10.7 213 201-444 2-256 (370)
12 cd04791 LanC_SerThrkinase Lant 97.0 0.0054 1.2E-07 67.4 12.2 171 185-373 88-264 (321)
13 COG1331 Highly conserved prote 96.8 0.0099 2.1E-07 71.2 12.9 78 251-331 416-499 (667)
14 PF07221 GlcNAc_2-epim: N-acyl 96.6 0.0088 1.9E-07 67.0 9.6 251 181-442 22-312 (346)
15 COG4403 LcnDR2 Lantibiotic mod 96.2 0.05 1.1E-06 66.6 13.6 124 177-329 695-822 (963)
16 PF06662 C5-epim_C: D-glucuron 96.2 0.041 8.9E-07 57.0 10.8 150 176-329 26-188 (189)
17 cd04792 LanM-like LanM-like pr 96.0 0.1 2.2E-06 65.5 15.7 214 188-438 549-777 (825)
18 PTZ00470 glycoside hydrolase f 95.7 0.19 4.2E-06 59.7 15.3 79 251-330 160-252 (522)
19 PF07470 Glyco_hydro_88: Glyco 95.2 0.13 2.8E-06 57.5 11.0 173 251-446 30-229 (336)
20 cd04791 LanC_SerThrkinase Lant 95.2 0.23 5.1E-06 54.6 12.9 126 185-330 144-271 (321)
21 PF07221 GlcNAc_2-epim: N-acyl 95.0 0.1 2.2E-06 58.5 9.7 174 182-373 83-298 (346)
22 cd04434 LanC_like LanC-like pr 94.8 0.74 1.6E-05 50.5 15.4 219 187-444 57-301 (343)
23 PF01532 Glyco_hydro_47: Glyco 94.6 0.092 2E-06 61.5 8.1 187 251-441 82-312 (452)
24 COG3533 Uncharacterized protei 94.5 0.13 2.8E-06 59.7 8.5 124 181-330 132-258 (589)
25 COG4225 Predicted unsaturated 94.4 0.18 3.9E-06 56.2 9.2 68 251-329 41-108 (357)
26 cd04434 LanC_like LanC-like pr 94.0 0.58 1.3E-05 51.3 12.6 178 185-373 104-289 (343)
27 cd04792 LanM-like LanM-like pr 93.9 1.4 2.9E-05 55.5 17.0 208 189-438 500-732 (825)
28 COG4225 Predicted unsaturated 93.3 0.4 8.6E-06 53.6 9.3 116 182-327 38-162 (357)
29 cd04794 euk_LANCL eukaryotic L 92.5 1.1 2.3E-05 50.4 11.8 181 182-373 103-293 (343)
30 PF06662 C5-epim_C: D-glucuron 92.4 0.17 3.6E-06 52.6 4.8 121 307-435 37-186 (189)
31 PTZ00470 glycoside hydrolase f 92.1 2.1 4.5E-05 51.2 13.9 140 181-327 156-314 (522)
32 cd04794 euk_LANCL eukaryotic L 91.8 1.3 2.8E-05 49.8 11.3 130 184-330 169-300 (343)
33 PF01532 Glyco_hydro_47: Glyco 91.4 0.38 8.3E-06 56.4 6.8 255 181-443 78-389 (452)
34 COG2942 N-acyl-D-glucosamine 2 89.6 8.1 0.00018 44.3 14.9 144 246-437 175-332 (388)
35 cd04793 LanC LanC is the cycla 88.9 5 0.00011 45.7 13.0 142 180-330 172-323 (382)
36 KOG2431 1, 2-alpha-mannosidase 87.9 10 0.00022 43.7 13.9 84 246-330 176-271 (546)
37 PF00759 Glyco_hydro_9: Glycos 87.8 2.5 5.5E-05 49.1 9.9 161 166-330 52-245 (444)
38 KOG2787 Lanthionine synthetase 87.7 2.2 4.8E-05 47.4 8.5 117 197-330 239-356 (403)
39 COG2942 N-acyl-D-glucosamine 2 86.5 6.9 0.00015 44.9 11.9 142 182-330 176-333 (388)
40 cd04793 LanC LanC is the cycla 85.0 11 0.00024 42.8 13.0 170 197-373 120-316 (382)
41 KOG2244 Highly conserved prote 84.3 5.1 0.00011 47.3 9.6 143 182-329 507-672 (786)
42 PLN02266 endoglucanase 83.6 12 0.00027 44.6 12.8 158 166-328 90-280 (510)
43 PLN02909 Endoglucanase 83.5 15 0.00033 43.6 13.4 152 166-327 78-264 (486)
44 PLN02345 endoglucanase 83.3 10 0.00022 44.8 11.9 155 166-326 40-228 (469)
45 KOG2429 Glycosyl hydrolase, fa 83.0 5.3 0.00012 47.3 9.1 75 147-227 161-241 (622)
46 PLN00119 endoglucanase 81.8 13 0.00028 44.2 12.0 158 166-328 75-265 (489)
47 PLN02613 endoglucanase 81.7 11 0.00025 44.8 11.6 153 166-328 70-257 (498)
48 PLN02340 endoglucanase 81.6 18 0.00038 44.4 13.3 171 153-328 57-264 (614)
49 PF05147 LANC_like: Lanthionin 80.7 5.6 0.00012 44.0 8.3 135 182-330 169-304 (355)
50 PLN03009 cellulase 80.2 43 0.00093 40.1 15.6 173 153-327 55-264 (495)
51 PF15095 IL33: Interleukin 33; 76.3 27 0.00058 37.2 10.8 115 662-791 130-246 (268)
52 PLN02175 endoglucanase 75.8 17 0.00037 43.2 10.6 160 167-328 69-259 (484)
53 PLN02308 endoglucanase 75.1 38 0.00083 40.5 13.2 171 153-327 55-261 (492)
54 PLN02420 endoglucanase 73.9 35 0.00075 41.1 12.5 172 153-329 68-277 (525)
55 PF06917 Pectate_lyase_2: Peri 72.8 6.9 0.00015 46.0 6.1 72 252-328 390-465 (557)
56 KOG2430 Glycosyl hydrolase, fa 70.8 34 0.00073 38.5 10.5 143 167-330 236-389 (587)
57 PLN02171 endoglucanase 70.0 46 0.001 40.9 12.6 171 153-328 57-265 (629)
58 PF13243 Prenyltrans_1: Prenyl 68.5 4.4 9.6E-05 37.2 2.9 40 185-226 28-67 (109)
59 COG4403 LcnDR2 Lantibiotic mod 66.0 42 0.0009 42.4 11.0 152 194-373 661-816 (963)
60 KOG2787 Lanthionine synthetase 65.3 37 0.00079 38.2 9.4 98 265-373 241-349 (403)
61 TIGR02474 pec_lyase pectate ly 62.5 9.7 0.00021 42.3 4.5 50 409-461 45-94 (290)
62 PF05147 LANC_like: Lanthionin 59.2 5.4 0.00012 44.2 1.9 167 189-373 115-297 (355)
63 PF06917 Pectate_lyase_2: Peri 58.7 37 0.0008 40.2 8.4 88 181-281 385-472 (557)
64 KOG2244 Highly conserved prote 58.6 83 0.0018 37.8 11.1 46 183-228 339-384 (786)
65 TIGR02474 pec_lyase pectate ly 46.9 81 0.0018 35.2 8.4 87 187-281 51-149 (290)
66 KOG2204 Mannosyl-oligosacchari 42.9 99 0.0022 37.2 8.7 230 185-432 267-551 (625)
67 PF13249 Prenyltrans_2: Prenyl 42.1 38 0.00083 30.9 4.4 61 205-281 42-104 (113)
68 PF09586 YfhO: Bacterial membr 35.9 1.3E+02 0.0028 38.1 9.1 58 542-605 773-831 (843)
69 PHA02651 IL-1 receptor antagon 34.4 28 0.0006 35.6 2.3 29 774-803 115-143 (165)
70 COG1188 Ribosome-associated he 33.3 77 0.0017 29.9 4.8 36 570-614 33-68 (100)
71 PF09492 Pec_lyase: Pectic aci 33.2 1.6E+02 0.0036 32.8 8.2 90 186-282 45-145 (289)
72 PF05592 Bac_rhamnosid: Bacter 31.1 2.4E+02 0.0052 33.5 9.8 138 186-336 156-321 (509)
73 KOG0602 Neutral trehalase [Car 25.7 1E+02 0.0023 37.6 5.4 105 168-282 407-516 (600)
74 PF12273 RCR: Chitin synthesis 23.7 55 0.0012 31.8 2.2 25 3-27 1-25 (130)
75 cd00100 IL1 Interleukin-1 homo 23.5 48 0.001 33.2 1.8 28 774-803 103-130 (144)
76 PF00340 IL1: Interleukin-1 / 22.9 64 0.0014 31.2 2.5 28 775-804 80-107 (120)
77 COG3603 Uncharacterized conser 22.8 1.5E+02 0.0032 28.9 4.7 32 557-608 20-51 (128)
78 PF09492 Pec_lyase: Pectic aci 22.7 49 0.0011 36.9 1.8 51 409-462 40-90 (289)
79 PF05726 Pirin_C: Pirin C-term 22.3 1.8E+02 0.0038 27.1 5.2 54 572-635 30-86 (104)
80 PF13464 DUF4115: Domain of un 22.1 5.3E+02 0.012 22.4 9.4 25 554-583 38-62 (77)
81 smart00125 IL1 Interleukin-1 h 21.3 58 0.0013 32.8 1.8 28 774-803 106-133 (147)
82 PHA02811 putative host range p 21.3 1.3E+02 0.0029 31.3 4.4 40 542-583 32-74 (197)
83 PF08547 CIA30: Complex I inte 21.2 4E+02 0.0086 26.5 7.9 53 809-861 47-103 (157)
84 TIGR03000 plancto_dom_1 Planct 21.0 4.7E+02 0.01 23.5 7.2 21 556-581 3-23 (75)
85 COG1339 Transcriptional regula 20.4 92 0.002 32.9 3.1 47 559-612 145-199 (214)
No 1
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=100.00 E-value=1.8e-105 Score=932.04 Aligned_cols=488 Identities=36% Similarity=0.638 Sum_probs=447.0
Q ss_pred CeEeCCCchhHHHHHHHHHHHHccCccchhHHHHHhcCCCCCCCCCCCCC--CCCcCccCcccchHHHHHHHHHHhcCcH
Q 002940 122 DVRLGSDSMHWRAQQTNLEYLLMLDVDKLVWNFRKTARLPAPGEPYGGWE--EPSCELRGHFVGHYLSASALMWASTHNE 199 (863)
Q Consensus 122 ~VrL~~~~~~~~~~~~~~~yLl~ld~drlL~~FR~~agL~~~g~~ygGWE--~~~~~l~Gh~~GhyLsala~~ya~TgD~ 199 (863)
+|||++ ++|+++|+++++|++.+++||||++||.+|||+.++.++|||| .++.+++||++||||||+|++|+.++|+
T Consensus 1 ~V~l~~-~~~~~~~~~~~~~~l~~~~d~ll~~~r~~agl~~~~~~~g~we~~~~~~~~~~~~~g~wl~a~a~~~~~~~D~ 79 (520)
T PF07944_consen 1 DVRLTD-GFWKRRQELNRAYLLPLDPDRLLYNFRSHAGLPNFAIAYGGWEGEFPGWWFRGHDVGKWLEAAAYAYAYTGDP 79 (520)
T ss_pred CeEECc-HHHHHHHHHHHHHHHHhHHHHHhhhcCcccCCCCccccCCCCccCCCCCccCCCcHHHHHHHHHHHHHHCCCH
Confidence 699996 8999999999999999999999999999999999999999999 8889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccCCchhhhhhhhcCCCccc----hhhHHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 002940 200 SLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAP----YYTIHKILAGLLDQYTYADNAEALRMTTWMV 275 (863)
Q Consensus 200 ~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~~~~~r~~~l~~~W~p----yYt~HKI~aGLld~Y~~tGn~~AL~va~~~a 275 (863)
+|++|++++|+.|++||+ +||||+++++.. ..+.+..|+| +|+.|||+.||+|+|++|||+++|++++++|
T Consensus 80 ~l~~~~d~~V~~l~~~Q~--~dGYl~~~~~~~---~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~a 154 (520)
T PF07944_consen 80 ELKAKADEIVDELAAAQQ--PDGYLGTYPEER---NFNPDDRWAPDMHELYCLGKLLEGLIDYYEATGNERALDVATKLA 154 (520)
T ss_pred HHHHHHHHHHHHHHHhcc--CCceeccccccc---ccccccCCCCCccceehHhHHHHHHHHHHHHHCcHHHHHHHHHHH
Confidence 999999999999999999 999999998743 1235678999 9999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccchhhhhhccccccccchHHHHHHHHHhcCCHHHHHHHhhcccccccch--hhccCCCCCCCcccCCC
Q 002940 276 EYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGL--LALQADDISGFHSNTHI 353 (863)
Q Consensus 276 d~~~~r~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~ryL~lA~~f~~~~~~~~--la~~~D~l~~~Hanthi 353 (863)
||+.++...+ ..+..+.++.+|+||||++|+|||++|||++||++|++|++..++++ +..+.|.+++.|+|+++
T Consensus 155 d~~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~~~~~~~~d~~~~~~a~~~~ 230 (520)
T PF07944_consen 155 DWVYRRLSRL----GPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQRGFDPYDLAYGQDHLPGRHANTHI 230 (520)
T ss_pred HHHHHHhccC----CHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCchhhcCccCCCcccccee
Confidence 9996655432 22334455668999999999999999999999999999999999888 88899999999999999
Q ss_pred Ceee-------hhhHHHHHhCCchhhc-----------cceeccccCCCC---CCCCcCCccccccCCCCCccchhHHHH
Q 002940 354 PIVI-------GSQMRYEVTGDQLHKE-----------GHQLESSGTNIG---HFNFKSDPKRLASNLDSNTEESCTTYN 412 (863)
Q Consensus 354 P~~~-------G~A~~Y~~TGD~~yl~-----------~h~y~tGG~s~~---E~~~f~~p~~l~~~l~~~~~EtCat~n 412 (863)
|.++ |++++|++|||++|++ +|+|+|||+|++ | +|++++.+++. ..++|||++||
T Consensus 231 ~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E--~f~~~~~lp~~--~~~~EtCas~~ 306 (520)
T PF07944_consen 231 GHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEGE--HFGPPYDLPNR--LAYAETCASVN 306 (520)
T ss_pred eEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCCc--cCCCCCCCCcC--CCCccccHHHH
Confidence 9998 9999999999999998 899999999999 9 99998887763 34599999999
Q ss_pred HHHHHHHhhcccccchHHHHHHHHHhhhcccccCCCCCCcEEEeccCCCCCCCccCcCCCCCCCCCcccCCCCccchhhh
Q 002940 413 MLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSK 492 (863)
Q Consensus 413 mlkl~~~L~~~tgD~~YaD~~ERalyN~iLa~q~~~~~g~~~Y~~PL~~g~~k~~~~~~~~t~~~~F~CC~gtg~e~~ak 492 (863)
||+++++||++|||++|+|+|||++||++||+|++ +++.++|++||+++..+... ..+.+++++||||+||++|+++|
T Consensus 307 ~~~~~~~L~~~tgd~~yaD~~Er~lyN~~la~~~~-d~~~~~Y~~pl~~~~~~~~~-~~~~~~~~~~~CC~~n~~r~~~~ 384 (520)
T PF07944_consen 307 MMKLARRLFRLTGDARYADYYERALYNALLAGQSP-DGGSFFYFNPLNSGPYKHRW-KNYRTPWFSFWCCPGNGARGWAK 384 (520)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhcccccccCC-CCCeeEEecCCccCcCcccc-ccccCCCCCCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999997 89999999999887755221 25667888999999999999999
Q ss_pred cccceEEeecCCCCcEEEEEeeCcEEEeeeCc--eEEEEEECCCCCCCCCeEEEEEEEeCCCCeeeEEEEeccCCccCCC
Q 002940 493 LGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQ--IVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNG 570 (863)
Q Consensus 493 l~~~iY~~~~~~~~~LyVnLYipS~l~~~~~g--v~v~q~T~~~yp~~~~~~VtltV~~~~~~~~ftL~LRIP~Wa~~~~ 570 (863)
|+++||++++ ++||||||+||+++|+.++ |+|+|+|+ |||++ +|+|+|++. ++.+|+|+||||+||+ +
T Consensus 385 ~~~~iy~~~~---~~l~v~ly~~s~~~~~~~~~~v~i~q~T~--yP~~~--~v~i~v~~~-~~~~f~l~lRIP~Wa~--~ 454 (520)
T PF07944_consen 385 LPDYIYFRDD---DGLYVNLYIPSELTWPVGGGTVTITQETD--YPFEG--TVRITVSPD-KPVPFTLRLRIPSWAK--G 454 (520)
T ss_pred HhhhheEecC---CEEEEEEEcceEEEEEECCcEEEEEEecC--CCCCC--CEEEEEEcC-CCccEEEEEEccCCCC--C
Confidence 9999999986 6999999999999999988 77888877 89998 999999875 6889999999999998 7
Q ss_pred cEEEECCee-cCCCCCCCEEEEEeecCCCCEEEEEecceeEEEecCCCccccCCeEEEeecceeee
Q 002940 571 AKATLNGQD-LPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLA 635 (863)
Q Consensus 571 ~~v~VNG~~-~~~~~~ggy~~I~R~Wk~GD~I~L~LPm~lr~~~~~d~~~~~~~~vAv~rGPlVlA 635 (863)
++|+|||++ .....++||++|+|+|++||+|+|+|||++|++++++.+++.++.+||+|||||||
T Consensus 455 ~~i~vNG~~~~~~~~~~gy~~i~r~W~~gD~v~l~lpm~~r~~~~~~~~~~~~~~vAv~rGPlV~a 520 (520)
T PF07944_consen 455 ATIRVNGEPVVDTAVPGGYLTIEREWKDGDVVELRLPMEVRLEPANPRVPDDPGRVAVMRGPLVYA 520 (520)
T ss_pred cEEEECCEeCCCCcCCCCeEEEEeeccCCcEEEEEecCeeEEEeCCCCCccCCCeEEEEeCchhcC
Confidence 999999999 55567999999999999999999999999999999888888899999999999997
No 2
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=6.7e-101 Score=843.33 Aligned_cols=483 Identities=25% Similarity=0.429 Sum_probs=434.5
Q ss_pred cccccCCCeEeCCCchhHHHHHHHHHHHHccCccchhHHHHHhcCCCCCCCCCCCCCCCCcCccCcccchHHHHHHHHHH
Q 002940 115 LKEVSLHDVRLGSDSMHWRAQQTNLEYLLMLDVDKLVWNFRKTARLPAPGEPYGGWEEPSCELRGHFVGHYLSASALMWA 194 (863)
Q Consensus 115 ~~p~pl~~VrL~~~~~~~~~~~~~~~yLl~ld~drlL~~FR~~agL~~~g~~ygGWE~~~~~l~Gh~~GhyLsala~~ya 194 (863)
++|+++++|++. +.|..+.+++..++.|+||++|...+.|+.+...++|||... |+||.+||||||+|++++
T Consensus 9 ~r~v~v~~~~~~------~~qg~~~d~v~~~~~d~Lldr~~ea~~l~~~d~~r~g~~~q~--f~dsdlgkwlea~A~~l~ 80 (589)
T COG3533 9 LRPVTVKDVIFG------QFQGKNRDVVVSLQADRLLDRCHEAAMLPAKDPFRGGWETQM--FWDSDLGKWLEAAAYSLA 80 (589)
T ss_pred cccCCcCchhcc------ccccccceeEEecCHHHHHhHhhhccCCCccCcccccceeee--eccccHHHHHHHHHHHHh
Confidence 777777777664 457888899999999999999999999999988899999654 999999999999999999
Q ss_pred hcCcHHHHHHHHHHHHHHHHHHHhcCCcccccCCchhh--hhhhhcCCCccchhhHHHHHHHHHHHHHHcCCHhHHHHHH
Q 002940 195 STHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQF--DRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTT 272 (863)
Q Consensus 195 ~TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~~~~--~r~~~l~~~W~pyYt~HKI~aGLld~Y~~tGn~~AL~va~ 272 (863)
.++|++|.++++++|+++++.|+ +||||+++.+..+ .||.+++..+. .|+.||++.|++|+|++||+.++|+|++
T Consensus 81 ~~~dp~Lekr~D~vi~~~a~~Qd--edGYl~~~~q~~~pe~Rw~nlr~~He-lY~aghLieg~va~~qaTGkr~lldV~~ 157 (589)
T COG3533 81 NKGDPELEKRIDEVVEELARAQD--EDGYLGGWFQADFPEERWGNLRPNHE-LYCAGHLIEGGVAAHQATGKRRLLDVVC 157 (589)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhc--cCCcccceeeccCchhhhhccccchH-HHHhHHHHhhhhHHHHhhCcchHHHHHH
Confidence 99999999999999999999999 9999999876433 47778888887 5556666677779999999999999999
Q ss_pred HHHHHHHHHhhhhhccchhhhhhccccccccchHHHHHHHHHhcCCHHHHHHHhhcccccccchhhccCCCCCCCcccCC
Q 002940 273 WMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTH 352 (863)
Q Consensus 273 ~~ad~~~~r~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~ryL~lA~~f~~~~~~~~la~~~D~l~~~Hanth 352 (863)
++|||+.+.|++.. + +.++-|++++|+++|++||+.|||+|||+||++|+++...+|++.+.|.+.+.||+++
T Consensus 158 rlADhi~tvfgp~~----~---q~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~rg~~P~~~rg~e~~~gHAvr~ 230 (589)
T COG3533 158 RLADHIATVFGPEE----D---QVPGYCGHPEIELALAELYRLTGDQRYLDLARRFIHQRGVEPLAQRGDELEGGHAVRQ 230 (589)
T ss_pred HHHHhhhhhcCccc----c---ccccccCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccChhhcCchhhhhhhHHHH
Confidence 99999998887642 2 3456688888999999999999999999999999999999999888888989999999
Q ss_pred CCeeehhhHHHHHhCCchhhc-----------cceeccccCCC-CCCCCcCCccccccCCCCCccchhHHHHHHHHHHHh
Q 002940 353 IPIVIGSQMRYEVTGDQLHKE-----------GHQLESSGTNI-GHFNFKSDPKRLASNLDSNTEESCTTYNMLKVSRHL 420 (863)
Q Consensus 353 iP~~~G~A~~Y~~TGD~~yl~-----------~h~y~tGG~s~-~E~~~f~~p~~l~~~l~~~~~EtCat~nmlkl~~~L 420 (863)
+|+++|+|.+|+++||+.++. +|+|+|||+|+ +| +|+++++|++ .+.|+||||+|||||++++|
T Consensus 231 iyl~~G~A~l~~~~gDds~r~~~~~lW~~~t~k~~YitGG~g~~~E--~F~~~ydlpn--~~~yAEtCas~~l~~~a~Rm 306 (589)
T COG3533 231 IYLYIGAADLAEETGDDSLRQAAEFLWQNVTTRQSYITGGNGSSNE--HFGPDYDLPN--RTAYAETCASYNLLKLARRM 306 (589)
T ss_pred HHHhhhHHHHHHHhCCHHHHHHHHHHHHHhhhhheEEecccCCccc--cCCccccCcc--cchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876 99999999965 59 9999999987 56899999999999999999
Q ss_pred hcccccchHHHHHHHHHhhhcccccCCCCCCcEEEeccCCCCCCCccCcCCCCCCCCCcccCCCCccchhhhcccceEEe
Q 002940 421 FRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLGDSIYFE 500 (863)
Q Consensus 421 ~~~tgD~~YaD~~ERalyN~iLa~q~~~~~g~~~Y~~PL~~g~~k~~~~~~~~t~~~~F~CC~gtg~e~~akl~~~iY~~ 500 (863)
+.+.+|.+|||+|||+|||++|++|++ ++++|+|+|||..++. +.+.++.+||||.||++|.++++++|||..
T Consensus 307 l~~~~d~~yaDvmErALYN~iL~g~sl-Dg~~ffY~nPle~~gr------h~r~~w~~c~CCppn~ar~~as~g~yiY~~ 379 (589)
T COG3533 307 LGWGPDSQYADVMERALYNHILAGQSL-DGGMFFYFNPLESGGR------HSRQKWFSCWCCPPNGARSVASIGDYIYTR 379 (589)
T ss_pred hccCCCchHHHHHHHHHHhccccccCC-CCCeeEEecchhhCCC------ccccccccCCCCCCcHhhhhhhccceEEcc
Confidence 999999999999999999999999997 9999999999986542 124577889999999999999999999999
Q ss_pred ecCCCCcEEEEEeeCcEEEeeeCceEEEEEECCCCCCCCCeEEEEEEEeCCCCeeeEEEEeccCCccCCCcEEEECCeec
Q 002940 501 EEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDL 580 (863)
Q Consensus 501 ~~~~~~~LyVnLYipS~l~~~~~gv~v~q~T~~~yp~~~~~~VtltV~~~~~~~~ftL~LRIP~Wa~~~~~~v~VNG~~~ 580 (863)
.+ ++||||||+.|+++.+..+|.|+|+|+ |||++ +|+|||+.. .+.+|+|+||||+||. .++++|||+.+
T Consensus 380 ~~---d~lyvnLy~~S~~~l~~~~v~irqet~--yPw~g--~v~ltv~~~-~p~~~tlaLRlP~W~a--~~tl~vNG~~~ 449 (589)
T COG3533 380 AD---DALYVNLYIASTADLPGDDVQIRQETN--YPWSG--QVKLTVERA-QPVLFTLALRLPAWCA--APTLRVNGKEV 449 (589)
T ss_pred CC---CEEEEEEeecccccccccceEEEeccC--CCCcC--eeEEEEecC-CCceEEEEEecccccC--CcEEEEcCcch
Confidence 76 699999999999999998899999999 89999 999999986 7899999999999999 79999999877
Q ss_pred CCCCCCCEEEEEeecCCCCEEEEEecceeEEEecCCCccccCCeEEEeecceeeeeecc
Q 002940 581 PLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLAGHSI 639 (863)
Q Consensus 581 ~~~~~ggy~~I~R~Wk~GD~I~L~LPm~lr~~~~~d~~~~~~~~vAv~rGPlVlA~~~~ 639 (863)
.....+||++|+|+|++||+|+|.|||++|++..|+++.. .+ ||+|||||||++..
T Consensus 450 ~~~~~~GYa~i~R~Wq~GDrV~L~LpM~vr~y~nP~~r~~-~G--Ai~rGPlVyc~e~~ 505 (589)
T COG3533 450 IQTRGKGYARISREWQAGDRVELMLPMPVRIYANPDVRHD-VG--AIMRGPLVYCAEAG 505 (589)
T ss_pred hhccCCCeeeeeehhcCCCeEEEeecceeEeecCCcchhh-hh--hhhcCCeEEEEecC
Confidence 6667899999999999999999999999998888877543 22 99999999998764
No 3
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=99.69 E-value=4.7e-17 Score=158.89 Aligned_cols=110 Identities=21% Similarity=0.256 Sum_probs=88.8
Q ss_pred ccccCCCCCCCceEEeecCCceEEEecCCCCCC-----CceEEEeeccCCCCCeEEEeecCCcceEEEEeeccCCCCcEE
Q 002940 727 SVMLEPFDSPGMLVIQHETDDELVVTDSFIAQG-----SSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTK 801 (863)
Q Consensus 727 ~v~l~p~~~p~~~v~~~~~~~~l~v~~~~~~~~-----~s~f~~vpGl~g~~g~vSles~~~pg~~~~~~~~~~~g~~~~ 801 (863)
++++++++.|++||||.|..+ +|++..++.. |++|+|||||++ +++|||||+++||.||||. +..|+
T Consensus 2 ~~~~~s~~~~~ryirh~~~~~--~~~~v~~~s~~~~r~da~f~vvpGLa~-~~~vSfES~~~PG~yLrh~-----~~~v~ 73 (142)
T PF05270_consen 2 SLRLTSPNYPDRYIRHRGSLV--RLDPVSSSSSALDRADATFRVVPGLAD-SSCVSFESVNYPGYYLRHS-----NFRVR 73 (142)
T ss_dssp EEEEEESSSTTEEEEEETTEE--EEEES-SSGGHHHHHGG-EEEEE-SS--TTCEEEEESSSTTEEEEEE-----TTEEE
T ss_pred eEEEECCCCCCeEEEEcCceE--EEeeccCCcchhhccCceEEEEEccCC-CCEEEEEECCCCCcEEEEE-----CCEEE
Confidence 468999999999999996665 5565555554 899999999998 6899999999999999996 88999
Q ss_pred EEeecCCCccccccccceecccCCCccCCceEEEecCCCcchhcc
Q 002940 802 LGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAP 846 (863)
Q Consensus 802 l~~~~~~~~~~f~~~asF~~~~gl~~y~piSf~a~g~~~~~ll~p 846 (863)
|+ +. +++..|.++|+|...+||+...-+||+...-+..||.+=
T Consensus 74 l~-~~-d~s~~F~~dATF~~~~Gl~~~g~~sfeS~n~Pg~ylrh~ 116 (142)
T PF05270_consen 74 LE-KN-DGSALFREDATFCPRPGLAGPGYVSFESYNYPGRYLRHY 116 (142)
T ss_dssp EE-E---SSHHHHHHT-EEEEE-SSSTTEEEEEESSSTTEEEEEE
T ss_pred Ee-ec-CCCccccCCceEEEecCCCCCCcceEEEecCCCeEEEEE
Confidence 99 44 888999999999999999995557999999999998753
No 4
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=99.32 E-value=5e-12 Score=123.76 Aligned_cols=124 Identities=19% Similarity=0.255 Sum_probs=86.9
Q ss_pred EEEeecCCceeeeecCC-CCCccccceEEEEEecCCCCCccccccCCCCCccccCCCCCCCceEEeecCCceEEEecCCC
Q 002940 678 FVLTNSNQSITMEKFPK-SGTDAALHATFRLILNDSSGSEFSSLNDFIGKSVMLEPFDSPGMLVIQHETDDELVVTDSFI 756 (863)
Q Consensus 678 ~~~~~~~~~~~~~~~p~-~gt~~~~~~~fr~~~~~~~~~~~~~p~~~~g~~v~l~p~~~p~~~v~~~~~~~~l~v~~~~~ 756 (863)
-.+.+.+..+.+.+... .++-..-.++||++.+-.+ ...|++|+-|.||.||||. +..|+++.+..
T Consensus 13 ryirh~~~~~~~~~v~~~s~~~~r~da~f~vvpGLa~-----------~~~vSfES~~~PG~yLrh~--~~~v~l~~~d~ 79 (142)
T PF05270_consen 13 RYIRHRGSLVRLDPVSSSSSALDRADATFRVVPGLAD-----------SSCVSFESVNYPGYYLRHS--NFRVRLEKNDG 79 (142)
T ss_dssp EEEEEETTEEEEEES-SSGGHHHHHGG-EEEEE-SS------------TTCEEEEESSSTTEEEEEE--TTEEEEEE--S
T ss_pred eEEEEcCceEEEeeccCCcchhhccCceEEEEEccCC-----------CCEEEEEECCCCCcEEEEE--CCEEEEeecCC
Confidence 34566677777776543 2223345799999855222 2379999999999999998 45556666544
Q ss_pred C---CCCceEEEeeccCCCCCeEEEeecCCcceEEEEeeccCCCCcEEEEeec--CCCccccccccceec
Q 002940 757 A---QGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCIS--ESTEAGFNNAASFVI 821 (863)
Q Consensus 757 ~---~~~s~f~~vpGl~g~~g~vSles~~~pg~~~~~~~~~~~g~~~~l~~~~--~~~~~~f~~~asF~~ 821 (863)
+ ..|+.|..+|||.+ +|.|||||.++||+||||. +..+.|. +. .+.++.|+++|||+.
T Consensus 80 s~~F~~dATF~~~~Gl~~-~g~~sfeS~n~Pg~ylrh~-----~~~l~l~-~~~g~d~~~~f~~datf~v 142 (142)
T PF05270_consen 80 SALFREDATFCPRPGLAG-PGYVSFESYNYPGRYLRHY-----NGELYLA-PIGGYDNTDSFRADATFRV 142 (142)
T ss_dssp SHHHHHHT-EEEEE-SSS-TTEEEEEESSSTTEEEEEE-----TTEEEEE-ESSSGG-SHHHHHHT-EEE
T ss_pred CccccCCceEEEecCCCC-CCcceEEEecCCCeEEEEE-----CCEEEEe-cCCCcCcchhhccccEEeC
Confidence 3 27889999999999 7999999999999999997 7889999 32 134677999999973
No 5
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=98.47 E-value=2.6e-06 Score=95.92 Aligned_cols=286 Identities=13% Similarity=0.029 Sum_probs=160.5
Q ss_pred cccchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcC-CcccccCCchhhhhhhhcCCCccchhhHHHHHHHHHHH
Q 002940 180 HFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIG-SGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQ 258 (863)
Q Consensus 180 h~~GhyLsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~~-dGYlga~p~~~~~r~~~l~~~W~pyYt~HKI~aGLld~ 258 (863)
......+-++|.+|..++++++++.++..++.|.+.-.... .||+-.++.+- +..+.+. -.|..=-++.|+..+
T Consensus 53 ~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g--~~~~~~~---~l~~~a~~l~ala~~ 127 (384)
T cd00249 53 WLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDG--RPVDATK---DLYSHAFALLAAAQA 127 (384)
T ss_pred EEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCC--CCccccc---chHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999987543212 47877664210 0000000 022222266778899
Q ss_pred HHHcCCHhHHHHHHHHHHHHHHHhhhhhccchhh--hhhcccc--ccccchHHHHHHHHHhcCCHHHHHHHhhccc---c
Q 002940 259 YTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIE--RHWQTLN--EEAGGMNDVLYKLFCITQDPKHLMLAHLFDK---P 331 (863)
Q Consensus 259 Y~~tGn~~AL~va~~~ad~~~~r~~~~~~~~~~~--~~~~~l~--~E~GGmne~L~~LY~~TGd~ryL~lA~~f~~---~ 331 (863)
|+.+|++++|+.|+++.+++.+++.+.-...... .-+.... ..+.=+.++|..||++|||++|++.|+.+.+ +
T Consensus 128 ~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~ 207 (384)
T cd00249 128 AKVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILD 207 (384)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998763100111000 0011111 1110013688999999999999999987542 1
Q ss_pred cccchhh----c-cCCCCCCCcccCC--C-C-----eeehhhHHHHHhCCchhhc----------ccee--ccccCCCCC
Q 002940 332 CFLGLLA----L-QADDISGFHSNTH--I-P-----IVIGSQMRYEVTGDQLHKE----------GHQL--ESSGTNIGH 386 (863)
Q Consensus 332 ~~~~~la----~-~~D~l~~~Hanth--i-P-----~~~G~A~~Y~~TGD~~yl~----------~h~y--~tGG~s~~E 386 (863)
.+.++.. . ..+...-...... + | .+.....+|+++||+.|++ .++. -.||+-..
T Consensus 208 ~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~~~G~~~~~- 286 (384)
T cd00249 208 RFIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALALGWDPERGGLYYS- 286 (384)
T ss_pred HhcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCccCCCEEEe-
Confidence 1211110 0 0011000000011 1 2 1233456789999999988 2222 11222110
Q ss_pred CCCcCCccccccCCCCCccchhHHHHHHHHHHHhhcccccchHHHHHHHH---HhhhcccccCCCCCCcEEEeccCCCCC
Q 002940 387 FNFKSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERS---LTNGVLGIQRGTEPGVMIYLLPLAPGS 463 (863)
Q Consensus 387 ~~~f~~p~~l~~~l~~~~~EtCat~nmlkl~~~L~~~tgD~~YaD~~ERa---lyN~iLa~q~~~~~g~~~Y~~PL~~g~ 463 (863)
..+.+.. ....+.-.....++++..-.|++++||.+|.+.++++ ++++.+..+ .++-+.+..+-+.-.
T Consensus 287 ---~~~~~~~---~~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~~~~~~~~~d~~---~G~w~~~~~~~g~~~ 357 (384)
T cd00249 287 ---FLDDGGL---LEDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAWAYLWRHFIDPE---YGLWFGYLDADGKVL 357 (384)
T ss_pred ---eECCCCC---cccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCC---CCcceeeECCCCCCc
Confidence 1111110 1233555566888899999999999999999999887 444444332 233344444322111
Q ss_pred CCccCcCCCCCCCCCcccC
Q 002940 464 SKERSYHHWGTPSDSFWCC 482 (863)
Q Consensus 464 ~k~~~~~~~~t~~~~F~CC 482 (863)
... ...|++.++.+-||
T Consensus 358 ~~~--~~~~~~~yH~~~a~ 374 (384)
T cd00249 358 LTP--KGPAKTFYHVVRAL 374 (384)
T ss_pred CCC--CCCCCCCccHHhHH
Confidence 110 03455666666665
No 6
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=97.81 E-value=0.0004 Score=77.50 Aligned_cols=228 Identities=14% Similarity=0.036 Sum_probs=127.4
Q ss_pred cccchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCcccccCCchhhhhhhhcCCCccchhhHHHHHHHHHHHH
Q 002940 180 HFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQY 259 (863)
Q Consensus 180 h~~GhyLsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~~~~~r~~~l~~~W~pyYt~HKI~aGLld~Y 259 (863)
.+.|.++.++..+|..|+|+++++.+..+++.+..... . .. .. +.+. +-..++..|
T Consensus 25 W~~G~~~~gl~~~~~~tgd~~~~~~a~~~~~~~~~~~~--~-----~~---------~~-d~~~-------~g~~~~~~y 80 (336)
T PF07470_consen 25 WTNGVFWYGLLEAYEYTGDERYLDYAERWADRFIEEDG--S-----DY---------NL-DDHD-------IGFLLLDLY 80 (336)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--T-----TT---------SC-CGTT-------HHHHHHHHH
T ss_pred cChhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccC--C-----cc---------CC-chhh-------hHHHHHHHH
Confidence 34677788899999999999999999999888876665 1 00 01 1111 122234689
Q ss_pred HHcCCHhHHHHHHHHHHHHHHHhhhhh-ccch---hhhhhccccccccchH-HHHHHHHHhcCCHHHHHHHhhccc---c
Q 002940 260 TYADNAEALRMTTWMVEYFYNRVQNVI-KKYS---IERHWQTLNEEAGGMN-DVLYKLFCITQDPKHLMLAHLFDK---P 331 (863)
Q Consensus 260 ~~tGn~~AL~va~~~ad~~~~r~~~~~-~~~~---~~~~~~~l~~E~GGmn-e~L~~LY~~TGd~ryL~lA~~f~~---~ 331 (863)
+.||+++.++++.+.++++.++..+.. .+.. ....+..++.- .|+ +.|+++++.|||++|++.|.+..+ +
T Consensus 81 ~~t~d~~y~~~~~~~a~~~l~~~~~~~~G~~~~~~~~~~~~wiD~~--~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~ 158 (336)
T PF07470_consen 81 ERTGDEKYKDAAIQAADWLLARRPRTSDGGFWHNRPYPNQVWIDGM--YMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRK 158 (336)
T ss_dssp HHH-THHHHHHHHHHHHHHHHTSCBECTGCBECTTTSTTEEETTHH--HHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCceeeccc--cccHHHHHHHHHHHCCcHHHHHHHHHHHHHHH
Confidence 999999999999999998876543311 1110 01111123322 267 788999999999999999976532 2
Q ss_pred cccchhhccCCCCCCCcccCCCC---------------eeehhhHHHHHhCC-----chhhc--ccee-ccccCCCCCCC
Q 002940 332 CFLGLLALQADDISGFHSNTHIP---------------IVIGSQMRYEVTGD-----QLHKE--GHQL-ESSGTNIGHFN 388 (863)
Q Consensus 332 ~~~~~la~~~D~l~~~HanthiP---------------~~~G~A~~Y~~TGD-----~~yl~--~h~y-~tGG~s~~E~~ 388 (863)
..+++. +.+ ..|..++.. .+.|.++.|+++.+ +.+++ .++. ..-.. .++.+
T Consensus 159 ~~~d~~----tGl-~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~-q~~~G 232 (336)
T PF07470_consen 159 YLYDPE----TGL-YYHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARY-QDEDG 232 (336)
T ss_dssp HHB-TT----TSS-BESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT-STTTS
T ss_pred hccCCC----CCc-eeeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhc-CCCCC
Confidence 233331 111 124333221 24788888988744 33433 1111 00001 12333
Q ss_pred CcCCccccccCCCCCccchhHHH----HHHHHHHHhhcccccchHHHHHHHHHhhhcccc
Q 002940 389 FKSDPKRLASNLDSNTEESCTTY----NMLKVSRHLFRWTKEIAYADYYERSLTNGVLGI 444 (863)
Q Consensus 389 ~f~~p~~l~~~l~~~~~EtCat~----nmlkl~~~L~~~tgD~~YaD~~ERalyN~iLa~ 444 (863)
.|...-.-+ . +....||.+|. .+++-.+ ..+..+.+|.+.+||++ ++++..
T Consensus 233 ~w~~~~~~~-~-~~~~~etSatA~~a~~l~~gi~--~g~~d~~~y~~~a~~a~-~~l~~~ 287 (336)
T PF07470_consen 233 LWYQDLDDP-D-PGNYRETSATAMFAYGLLRGIR--LGLLDPEEYRPAAEKAL-EALLSN 287 (336)
T ss_dssp BEBSBTTTT-T-TTS-BEHHHHHHHHHHHHHHHH--TTSSTHHHHHHHHHHHH-HHHHHC
T ss_pred CcceecCCC-C-CCCcccHHHHHHHHHHHHHHHH--cCCCccHHHHHHHHHHH-HHHHhC
Confidence 444211111 1 23566666664 4433221 23344679999999986 777776
No 7
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=97.64 E-value=0.00049 Score=77.62 Aligned_cols=183 Identities=13% Similarity=0.051 Sum_probs=108.7
Q ss_pred cchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCcccccCCchhhhhhhhcCCCccchhhHHHHHHHHHHHHHH
Q 002940 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTY 261 (863)
Q Consensus 182 ~GhyLsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~~~~~r~~~l~~~W~pyYt~HKI~aGLld~Y~~ 261 (863)
-.+.+.|++.+|..|+|+++++.++++++.+.+..-....||+..+... . .......-.+|.+. +++..+++
T Consensus 117 ~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~----~---~~~~~~~~~~h~~~-all~l~~~ 188 (384)
T cd00249 117 HAFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPG----T---PPYRGSNPHMHLLE-AMLAAYEA 188 (384)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCC----C---CCCCCCChhHHHHH-HHHHHHHH
Confidence 4678899999999999999999999999999877641123343222110 0 11111222456676 47799999
Q ss_pred cCCHhHHHHHHHHHHHHHHHhhhhhcc-c---hhhhhhcccc------ccccc---hHHHHHHHHHhcCCHHHHHHHhhc
Q 002940 262 ADNAEALRMTTWMVEYFYNRVQNVIKK-Y---SIERHWQTLN------EEAGG---MNDVLYKLFCITQDPKHLMLAHLF 328 (863)
Q Consensus 262 tGn~~AL~va~~~ad~~~~r~~~~~~~-~---~~~~~~~~l~------~E~GG---mne~L~~LY~~TGd~ryL~lA~~f 328 (863)
||+++.++.+.++.+.+..++.....+ . ..+. |..+. .+-|. +...|.+||++|||++|++.|+.+
T Consensus 189 tgd~~~~~~A~~l~~~~~~~~~~~~~G~~~e~~~~~-~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~ 267 (384)
T cd00249 189 TGEQKYLDRADEIADLILDRFIDAESGVVREHFDED-WNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRL 267 (384)
T ss_pred hCCHHHHHHHHHHHHHHHHHhcCcccCeEEEEECCC-CCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 999999999999999988776421111 1 1111 11010 11111 224567899999999999999876
Q ss_pred cc---ccccchhhc-----cCCCCCCCcccCCC-----CeeehhhHHHHHhCCchhhc
Q 002940 329 DK---PCFLGLLAL-----QADDISGFHSNTHI-----PIVIGSQMRYEVTGDQLHKE 373 (863)
Q Consensus 329 ~~---~~~~~~la~-----~~D~l~~~Hanthi-----P~~~G~A~~Y~~TGD~~yl~ 373 (863)
.+ ..+.++... ..+........+.. -.+.+....|++|||++|++
T Consensus 268 ~~~~~~~~~d~~~G~~~~~~~~~~~~~~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~ 325 (384)
T cd00249 268 FDLALALGWDPERGGLYYSFLDDGGLLEDDDKRWWPQTEALKAALALAGITGDERYWQ 325 (384)
T ss_pred HHHHHHhCcCccCCCEEEeeECCCCCcccccccccHHHHHHHHHHHHHHhcCCHHHHH
Confidence 42 222222110 00000000001111 12455777899999999987
No 8
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=97.64 E-value=0.00013 Score=82.80 Aligned_cols=174 Identities=14% Similarity=0.151 Sum_probs=94.1
Q ss_pred cchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCcccccCCc--hhhhhhhhcCCCccchhhHHHHHHHHHHHH
Q 002940 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPT--EQFDRLEALIPVWAPYYTIHKILAGLLDQY 259 (863)
Q Consensus 182 ~GhyLsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~--~~~~r~~~l~~~W~pyYt~HKI~aGLld~Y 259 (863)
.++.++++.-.|..++|+++++.+...+.....-. .+-|...... .+.|. ..| +-.+++++|
T Consensus 38 ~a~~~~~~~d~~~~t~d~~y~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~DD-----~aw--------~~la~l~ay 101 (370)
T PF03663_consen 38 QAVMLSALIDYYRRTGDPTYNDLIQNALLNQRGPN---YDSYNPSNGSGDRYYDD-----NAW--------WALALLRAY 101 (370)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHT---TSSS--S------BHHH-----HHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhccc---ccccccccccccCccCh-----HHH--------HHHHHHHHH
Confidence 68889999999999999998888887766543222 1113221100 01111 112 224566999
Q ss_pred HHcCCH-----hHHHHHHHHHHHHHHHhhhhhccchhhhhhcc-----c----c-ccccchHHHHHHHHHhcCCHHHHHH
Q 002940 260 TYADNA-----EALRMTTWMVEYFYNRVQNVIKKYSIERHWQT-----L----N-EEAGGMNDVLYKLFCITQDPKHLML 324 (863)
Q Consensus 260 ~~tGn~-----~AL~va~~~ad~~~~r~~~~~~~~~~~~~~~~-----l----~-~E~GGmne~L~~LY~~TGd~ryL~l 324 (863)
++||++ +.|+.|+...+++..++.... -.+.-+|.. . + +.-|..-...++||++|||++||+.
T Consensus 102 e~t~~~~~~~~~yL~~A~~i~~~~~~~wd~~~--cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~ 179 (370)
T PF03663_consen 102 ELTGDQPSDNPKYLDLAKEIFDFLISGWDDTS--CGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRITGDQTYLDW 179 (370)
T ss_dssp HHH--H-----HHHHHHHHHHHHHHHTB-SGG---GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HhhCCCcchHHHHHHHHHHHHHHHHHhcCCcc--CCCCccccccccCCCCCcccccchHHHHHHHHHHHHhcCChHHHHH
Confidence 999999 999999999999987665431 011223331 0 1 2212233566899999999999999
Q ss_pred Hhhccc---c-cccchhhc-cCCCC----------CCCcccCCCCeeehhhHHHHHhCCc-hhhc
Q 002940 325 AHLFDK---P-CFLGLLAL-QADDI----------SGFHSNTHIPIVIGSQMRYEVTGDQ-LHKE 373 (863)
Q Consensus 325 A~~f~~---~-~~~~~la~-~~D~l----------~~~HanthiP~~~G~A~~Y~~TGD~-~yl~ 373 (863)
|++..+ . .+.++... -.|.+ ...+...+...+.|++.+|++|+++ .|++
T Consensus 180 A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~ 244 (370)
T PF03663_consen 180 AKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLD 244 (370)
T ss_dssp HHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHH
T ss_pred HHHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHH
Confidence 998643 2 33333100 00100 0011111223456788899999877 9988
No 9
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=97.53 E-value=0.00057 Score=81.04 Aligned_cols=237 Identities=16% Similarity=0.115 Sum_probs=125.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhc--CCccccc-CC--chhhhhhhh--cCCCccchhhHHHHHHHHHHHHHHcCCHhHHHH
Q 002940 198 NESLKEKMSAVVSALSACQKEI--GSGYLSA-FP--TEQFDRLEA--LIPVWAPYYTIHKILAGLLDQYTYADNAEALRM 270 (863)
Q Consensus 198 D~~lk~k~~~~Vd~L~~~Q~~~--~dGYlga-~p--~~~~~r~~~--l~~~W~pyYt~HKI~aGLld~Y~~tGn~~AL~v 270 (863)
|.-++++.+...+.++..|-.. ..+...+ .+ ......|+. ....|.-.-.+| .+.|+...|..++|++.++.
T Consensus 6 ~~~~~~~~~~~~~~~l~~~~d~ll~~~r~~agl~~~~~~~g~we~~~~~~~~~~~~~g~-wl~a~a~~~~~~~D~~l~~~ 84 (520)
T PF07944_consen 6 DGFWKRRQELNRAYLLPLDPDRLLYNFRSHAGLPNFAIAYGGWEGEFPGWWFRGHDVGK-WLEAAAYAYAYTGDPELKAK 84 (520)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHhhhcCcccCCCCccccCCCCccCCCCCccCCCcHHH-HHHHHHHHHHHCCCHHHHHH
Confidence 4566677777777766665421 2222222 11 011122221 111222223344 44556678899999999999
Q ss_pred HHHHHHHHHHHhhh--hhccchh------hhhhcc-ccccc--cchHHHHHHHHHhcCCHHHHHHHhhccccc--ccchh
Q 002940 271 TTWMVEYFYNRVQN--VIKKYSI------ERHWQT-LNEEA--GGMNDVLYKLFCITQDPKHLMLAHLFDKPC--FLGLL 337 (863)
Q Consensus 271 a~~~ad~~~~r~~~--~~~~~~~------~~~~~~-l~~E~--GGmne~L~~LY~~TGd~ryL~lA~~f~~~~--~~~~l 337 (863)
+.++.+.+.+...+ ++..... ...|.. .|+-+ |-|-++|...|+.||+++.|++|.++.+-. ....+
T Consensus 85 ~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~~ 164 (520)
T PF07944_consen 85 ADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDYYEATGNERALDVATKLADWVYRRLSRL 164 (520)
T ss_pred HHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhccC
Confidence 99999999865532 1111111 111222 11111 224589999999999999999999875421 01111
Q ss_pred hccCCCCCCCcccCCCCeeehhhHHHHHhCCchhhc--cceeccccCCC--CCCCCcCCccccccCCCCCccchhH--HH
Q 002940 338 ALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKE--GHQLESSGTNI--GHFNFKSDPKRLASNLDSNTEESCT--TY 411 (863)
Q Consensus 338 a~~~D~l~~~HanthiP~~~G~A~~Y~~TGD~~yl~--~h~y~tGG~s~--~E~~~f~~p~~l~~~l~~~~~EtCa--t~ 411 (863)
. .+.+.......|.=+..+.+.+|++|||++|++ .+..-..|... .+ ... +.++. ....+.+..+ ..
T Consensus 165 ~--~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~~~~~--~~~--d~~~~-~~a~~~~~h~vr~~ 237 (520)
T PF07944_consen 165 G--PEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQRGFDPYDLA--YGQ--DHLPG-RHANTHIGHAVRAM 237 (520)
T ss_pred C--HHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCchh--hcC--ccCCC-ccccceeeEEEEhh
Confidence 0 010000111223334477889999999999999 22222222221 11 111 12211 1112222222 23
Q ss_pred HHHHHHHHhhcccccchHHHHHHHHHhhhcc
Q 002940 412 NMLKVSRHLFRWTKEIAYADYYERSLTNGVL 442 (863)
Q Consensus 412 nmlkl~~~L~~~tgD~~YaD~~ERalyN~iL 442 (863)
-+.+-...+++.|||.+|.+..|+..-|-+-
T Consensus 238 y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~ 268 (520)
T PF07944_consen 238 YLYSGAADLYEETGDEEYLDAAENFWDNVVR 268 (520)
T ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 4555667889999999999999998866443
No 10
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0092 Score=71.41 Aligned_cols=253 Identities=18% Similarity=0.174 Sum_probs=145.3
Q ss_pred CCCCCCCCCcCccCcccchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH--HhcCCcccccCCchhhhhhhhcCCCc-
Q 002940 166 PYGGWEEPSCELRGHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQ--KEIGSGYLSAFPTEQFDRLEALIPVW- 242 (863)
Q Consensus 166 ~ygGWE~~~~~l~Gh~~GhyLsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q--~~~~dGYlga~p~~~~~r~~~l~~~W- 242 (863)
.||||-+.+-.. ..|-|.-+...+..++|++-++.+..-++.++.-= +..+.|+. |+. .+..|
T Consensus 199 ~~GGfg~~pKFP----~~~~l~~Llr~~~~~~d~~~~~~~~~TL~~ma~GGIyDhlgGGF~---------RYS-tD~~Wl 264 (667)
T COG1331 199 EYGGFGSAPKFP----PPHLLLFLLRYSLRTGDERALDMVLRTLDAMARGGIYDHLGGGFF---------RYS-TDREWL 264 (667)
T ss_pred hhCCcCCCCCCC----ChHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHccCCccccCCcee---------eee-cCCcee
Confidence 588998877554 56667777888888999999988888888765210 00022222 221 12223
Q ss_pred cc-----hhhHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhhc-------c-----------chhhhhhcccc
Q 002940 243 AP-----YYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIK-------K-----------YSIERHWQTLN 299 (863)
Q Consensus 243 ~p-----yYt~HKI~aGLld~Y~~tGn~~AL~va~~~ad~~~~r~~~~~~-------~-----------~~~~~~~~~l~ 299 (863)
.| .|.--.++.....+|++|||+..++++....+|+.+.+..--. + |+.++-...+.
T Consensus 265 vPHFEKMLyDnA~l~~~y~~ay~~tgd~~y~~~a~~i~~~l~rel~sp~ggFyss~DAD~~g~EG~~Y~Ws~eEi~~~Lg 344 (667)
T COG1331 265 VPHFEKMLYDNALLLRAYAEAYRATGDDLYRRAAEGILDYLLRELYSPEGGFYSSLDADSDGEEGKYYTWSVEELKEVLG 344 (667)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCceeecccccCcccCCCeeecCHHHHHHHhc
Confidence 22 4444456677778999999999999999999999864321000 0 00000000000
Q ss_pred -----------------cc-------------------------------------------------ccchHHHHHHHH
Q 002940 300 -----------------EE-------------------------------------------------AGGMNDVLYKLF 313 (863)
Q Consensus 300 -----------------~E-------------------------------------------------~GGmne~L~~LY 313 (863)
.| -|-|..+|++++
T Consensus 345 ~d~~~~~~~f~vs~~GnfeGrnvL~~~~~~~~~~~~~~~~l~~~r~kL~~~R~~R~~P~~Ddkvlt~wNglmi~aLa~a~ 424 (667)
T COG1331 345 EDAELACKYFDVSEEGNFEGRNVLHVPGPLEEAIEEAEEKLERAREKLLAAREKRKQPSRDDKVLTDWNGLMIAALAEAG 424 (667)
T ss_pred ccHHHHHHHcccCCCCCcCCceeecccCchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCCcceeeccHHHHHHHHHHHH
Confidence 00 233558999999
Q ss_pred HhcCCHHHHHHHhhc---ccccccchhhccCCCCCCCcccCCC----------CeeehhhHHHHHhCCchhhc-------
Q 002940 314 CITQDPKHLMLAHLF---DKPCFLGLLALQADDISGFHSNTHI----------PIVIGSQMRYEVTGDQLHKE------- 373 (863)
Q Consensus 314 ~~TGd~ryL~lA~~f---~~~~~~~~la~~~D~l~~~Hanthi----------P~~~G~A~~Y~~TGD~~yl~------- 373 (863)
.++||++|++.|++- +...+.+ |.|...+-.... -.+.|...+|++|+|.+|++
T Consensus 425 ~~~~d~~~l~~A~~~~~fi~~~l~~------~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A~~L~~ 498 (667)
T COG1331 425 RVLGDPEYLEAAERAADFILDNLYV------DRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKAIELAD 498 (667)
T ss_pred HHcCChHHHHHHHHHHHHHHHhhcc------cchheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 999999999999874 3222221 222222212221 12466778899999999998
Q ss_pred ---ccee-ccccC----CCCCCCCcCCccccccCCCCCccchhHHHHHHHHHHHhhcccccchHHHHHHHHH--hhhccc
Q 002940 374 ---GHQL-ESSGT----NIGHFNFKSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSL--TNGVLG 443 (863)
Q Consensus 374 ---~h~y-~tGG~----s~~E~~~f~~p~~l~~~l~~~~~EtCat~nmlkl~~~L~~~tgD~~YaD~~ERal--yN~iLa 443 (863)
.+.. ..||+ +.+|. -...+ ....+.-.++=+++... -.-+|-++|||.+|.|..|++| +=+.++
T Consensus 499 ~~i~~f~d~~gGf~~t~~~~~~-l~ir~----~~~~D~a~~S~na~~~~-~L~~Ls~ltg~~~y~e~A~~~L~a~~~~~~ 572 (667)
T COG1331 499 EAIADFWDDEGGFYDTPSDSED-LLIRP----KEPTDGATPSGNAVAAQ-ALLRLSLLTGDARYLEAAEDILQAFAGLAE 572 (667)
T ss_pred HHHHHhcCCCCCcccCCCcccc-cccCC----CCCCCCCCCCHHHHHHH-HHHHHHhhcCchhHHHHHHHHHHHHHHHHH
Confidence 1211 22342 12220 11111 11112333444444333 2334678899999999999998 544444
Q ss_pred c
Q 002940 444 I 444 (863)
Q Consensus 444 ~ 444 (863)
.
T Consensus 573 ~ 573 (667)
T COG1331 573 R 573 (667)
T ss_pred h
Confidence 3
No 11
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=97.18 E-value=0.0019 Score=73.57 Aligned_cols=213 Identities=18% Similarity=0.142 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCc-ccccCCchhhhhhhhcCCCccchhhHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHH
Q 002940 201 LKEKMSAVVSALSACQKEIGSG-YLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFY 279 (863)
Q Consensus 201 lk~k~~~~Vd~L~~~Q~~~~dG-Ylga~p~~~~~r~~~l~~~W~pyYt~HKI~aGLld~Y~~tGn~~AL~va~~~ad~~~ 279 (863)
+|+++..+++.|.+.=.....| +.+.++.. ..||+ ..|. +..++|+|+.+|+++..+++.+......
T Consensus 2 ~~~~A~~~~~~l~~~y~~~~~g~~~g~~~~~---------~~~W~--~a~~-~~~~~d~~~~t~d~~y~~~~~~~~~~~~ 69 (370)
T PF03663_consen 2 IKDAAKSAADALQKYYNGNASGNIPGLFPSP---------YYWWW--QAVM-LSALIDYYRRTGDPTYNDLIQNALLNQR 69 (370)
T ss_dssp ------HHHHHHHHHHB-SSTTT-B-SEES-----------H-HH--HHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhCCCCCCCCCCCCCCC---------CCcCh--HHHH-HHHHHHHHHHhCcchHHHHHHHHHHHHh
Confidence 4566777777776333321122 22222211 12332 5554 4568899999999999988887777665
Q ss_pred HHhhh-hhcc------ch-hhhhhccccccccchHHHHHHHHHhcCCH-----HHHHHHhhccc---ccccchhhccCCC
Q 002940 280 NRVQN-VIKK------YS-IERHWQTLNEEAGGMNDVLYKLFCITQDP-----KHLMLAHLFDK---PCFLGLLALQADD 343 (863)
Q Consensus 280 ~r~~~-~~~~------~~-~~~~~~~l~~E~GGmne~L~~LY~~TGd~-----ryL~lA~~f~~---~~~~~~la~~~D~ 343 (863)
..... .... .. +..| +-.++.++|++||++ +||++|+...+ ..+....-.
T Consensus 70 ~~~~~~~~~~~~~~~~~~DD~aw----------~~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~~wd~~~cg---- 135 (370)
T PF03663_consen 70 GPNYDSYNPSNGSGDRYYDDNAW----------WALALLRAYELTGDQPSDNPKYLDLAKEIFDFLISGWDDTSCG---- 135 (370)
T ss_dssp HHTTSSS--S------BHHHHHH----------HHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHTB-SGG-G----
T ss_pred cccccccccccccccCccChHHH----------HHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHhcCCccCC----
Confidence 43311 1111 01 1111 236889999999999 99999998542 111111000
Q ss_pred CCCCccc--------------CCCCeeehhhHHHHHhCCchhhc--ccee----ccccCCCCCCCCcCCccccccCC-CC
Q 002940 344 ISGFHSN--------------THIPIVIGSQMRYEVTGDQLHKE--GHQL----ESSGTNIGHFNFKSDPKRLASNL-DS 402 (863)
Q Consensus 344 l~~~Han--------------thiP~~~G~A~~Y~~TGD~~yl~--~h~y----~tGG~s~~E~~~f~~p~~l~~~l-~~ 402 (863)
.|+..+ +..|.++.++++|++|||+.|++ .+.| -+|-+ ..+...+.+ .+...- -.
T Consensus 136 -GGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A~~~~~W~~~~~L~-d~~~g~v~D--g~~~~~~c~ 211 (370)
T PF03663_consen 136 -GGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRITGDQTYLDWAKKIYDWMRDSGLI-DPSTGLVYD--GINIDGNCT 211 (370)
T ss_dssp -S-BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHB---TTS-B----EE-TTSSS-
T ss_pred -CCccccccccCCCCCcccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhcceeE-ECCCcEEEe--CCccCCCCC
Confidence 122111 12234566889999999999998 1111 11111 111001111 110000 01
Q ss_pred CccchhHHH---HHHHHHHHhhcccccc-hHHHHHHHHHhhhcccc
Q 002940 403 NTEESCTTY---NMLKVSRHLFRWTKEI-AYADYYERSLTNGVLGI 444 (863)
Q Consensus 403 ~~~EtCat~---nmlkl~~~L~~~tgD~-~YaD~~ERalyN~iLa~ 444 (863)
...++--|| -+|.-+..|++.|++. .|.|..++++ |+++..
T Consensus 212 ~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la-~~~~~~ 256 (370)
T PF03663_consen 212 NINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLA-DAAINH 256 (370)
T ss_dssp B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHH-HHHHHH
T ss_pred cCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHH-HHHHHH
Confidence 122333334 4688888999999776 9999999987 555444
No 12
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=97.03 E-value=0.0054 Score=67.45 Aligned_cols=171 Identities=14% Similarity=0.010 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCcccccCCchhhhhhhhcCCCccchhhHHHHHHHHHHHHHHcCC
Q 002940 185 YLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADN 264 (863)
Q Consensus 185 yLsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~~~~~r~~~l~~~W~pyYt~HKI~aGLld~Y~~tGn 264 (863)
.+-++..+|.. +|+++.+.+.++++.|.+.... .+.+.. .+.. ......+.-=+.+ |...|+..|+.|++
T Consensus 88 ~~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~-~~~~~~-~~~~-----~~~~~G~~hG~aG--i~~~L~~l~~~t~d 157 (321)
T cd04791 88 IGLALLYFART-GDPALLEAAAKIAELLAEALER-GDPALL-WPDF-----DRVDHGLLHGWAG--IALFLLRLYKATGD 157 (321)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhc-cccccc-cccC-----CCCCCccccCcHH--HHHHHHHHHHHHCC
Confidence 45566677778 9999999999999998876542 111111 1000 0011122222223 66778889999999
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhccch--hhhhhcccccccc--chHHHHHHHHHhcCCHHHHHHHhhcccccccchhhcc
Q 002940 265 AEALRMTTWMVEYFYNRVQNVIKKYS--IERHWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQ 340 (863)
Q Consensus 265 ~~AL~va~~~ad~~~~r~~~~~~~~~--~~~~~~~l~~E~G--Gmne~L~~LY~~TGd~ryL~lA~~f~~~~~~~~la~~ 340 (863)
++.++.+.++.+++.+.+.+.-.++. .+.......--+| ||-.++.++|+.|+|++|++.|+...+...-. .
T Consensus 158 ~~~l~~A~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~----~ 233 (321)
T cd04791 158 SRYLELAEEALDKELARAVVDDGGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAALSS----C 233 (321)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCceEcCCCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhh----h
Confidence 99999999999999876543111110 0000001111233 78899999999999999999998875432100 0
Q ss_pred CCCCCCCcccCCCCeeehh--hHHHHHhCCchhhc
Q 002940 341 ADDISGFHSNTHIPIVIGS--QMRYEVTGDQLHKE 373 (863)
Q Consensus 341 ~D~l~~~HanthiP~~~G~--A~~Y~~TGD~~yl~ 373 (863)
...+...|...-++. ...|+.++|++|++
T Consensus 234 ----~~~~~lchG~~G~~~~l~~~~~~~~~~~~~~ 264 (321)
T cd04791 234 ----YANPGLFSGTAGLGAHLNDLAAEGDNALYKA 264 (321)
T ss_pred ----ccCccccCCcHhHHHHHHhhcccccChHHHH
Confidence 011223455443443 34578999999887
No 13
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0099 Score=71.17 Aligned_cols=78 Identities=17% Similarity=0.102 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhhccchhhhh--hcc----ccccccchHHHHHHHHHhcCCHHHHHH
Q 002940 251 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERH--WQT----LNEEAGGMNDVLYKLFCITQDPKHLML 324 (863)
Q Consensus 251 I~aGLld~Y~~tGn~~AL~va~~~ad~~~~r~~~~~~~~~~~~~--~~~----l~~E~GGmne~L~~LY~~TGd~ryL~l 324 (863)
+..+|..+++++|+++.+++|++.++++.+.+..- .+. .++ +.. +-.-+.-+..+|..||++|+|.+||+.
T Consensus 416 mi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~--rl~-~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~ 492 (667)
T COG1331 416 MIAALAEAGRVLGDPEYLEAAERAADFILDNLYVD--RLL-RRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEK 492 (667)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccc--chh-eeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHH
Confidence 45678889999999999999999999998755421 000 000 000 001111234688999999999999999
Q ss_pred Hhhcccc
Q 002940 325 AHLFDKP 331 (863)
Q Consensus 325 A~~f~~~ 331 (863)
|+.+.+.
T Consensus 493 A~~L~~~ 499 (667)
T COG1331 493 AIELADE 499 (667)
T ss_pred HHHHHHH
Confidence 9987653
No 14
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=96.58 E-value=0.0088 Score=66.98 Aligned_cols=251 Identities=15% Similarity=0.074 Sum_probs=130.8
Q ss_pred ccchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh-cCCcccccCCchhhhhhhhcCCCccchhhHHHHHHHHHHHH
Q 002940 181 FVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKE-IGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQY 259 (863)
Q Consensus 181 ~~GhyLsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~-~~dGYlga~p~~~~~r~~~l~~~W~pyYt~HKI~aGLld~Y 259 (863)
+.+.-+=+.|.+|. +++++.++.++.-++.|.+.-.. ...||+......- -+ . .=-..|...-++.++ +.|
T Consensus 22 ~q~R~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~--~~---~-~~~~~Y~~af~l~al-a~~ 93 (346)
T PF07221_consen 22 VQARQLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG--PL---D-PQKDLYDQAFALLAL-AEA 93 (346)
T ss_dssp HHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE--EE---E---EEHHHHHHHHHHH-HHH
T ss_pred eeHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC--CC---c-cccchHHHHHHHHHH-HHH
Confidence 45666777888888 89999999999999999877642 1346765443211 00 0 001244444467777 448
Q ss_pred HHcCCHhHHHHHHHHHHHHHHHhhhhhccch----hhhhhcc--ccccccchHHHHHHHHHhcCCHHHHHHHhhccc---
Q 002940 260 TYADNAEALRMTTWMVEYFYNRVQNVIKKYS----IERHWQT--LNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDK--- 330 (863)
Q Consensus 260 ~~tGn~~AL~va~~~ad~~~~r~~~~~~~~~----~~~~~~~--l~~E~GGmne~L~~LY~~TGd~ryL~lA~~f~~--- 330 (863)
..||+++++++|.++.+++.+++..-..+.. ...+... .+.. -=+.+++..||++|||++|++.|+.+.+
T Consensus 94 ~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~r~~n~~-mhl~eA~l~l~~~~~~~~~~~~a~~l~~~~~ 172 (346)
T PF07221_consen 94 RATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPPRGQNPH-MHLLEAFLALYEATGDPRYLDRAEELLDLFL 172 (346)
T ss_dssp HCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCBEEHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCCccccCCCCChh-HHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 8999999999999999999988743111110 0111110 0010 0012577889999999999999987643
Q ss_pred ccccchhhcc-----CCCC---C-CCcccCCCC--eeehhhHH-------HH---HhCCchhhc------cceeccccCC
Q 002940 331 PCFLGLLALQ-----ADDI---S-GFHSNTHIP--IVIGSQMR-------YE---VTGDQLHKE------GHQLESSGTN 383 (863)
Q Consensus 331 ~~~~~~la~~-----~D~l---~-~~HanthiP--~~~G~A~~-------Y~---~TGD~~yl~------~h~y~tGG~s 383 (863)
..|+++.... .+++ . ..+..+-.+ +-.||..- +. ..+++.+++ .++...|-.-
T Consensus 173 ~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~~~~~~~a~~l~~~~~~~G~d~ 252 (346)
T PF07221_consen 173 DRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRGDPDWLERARRLFDFALEHGWDR 252 (346)
T ss_dssp TTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-HTHHHHHHHHHHHHHHHHBST
T ss_pred HHHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHheEec
Confidence 1232221100 0000 0 000000001 22454322 22 446667764 1111111110
Q ss_pred CCCCCCcCCccccccCCCCCccchhHHHHHHHHHHHhhcccccchHHHHHHHHH---hhhcc
Q 002940 384 IGHFNFKSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSL---TNGVL 442 (863)
Q Consensus 384 ~~E~~~f~~p~~l~~~l~~~~~EtCat~nmlkl~~~L~~~tgD~~YaD~~ERal---yN~iL 442 (863)
..- +.+..- ...+......--.-...+.|+-+-.+++.|||.+|.+.++++. ++++.
T Consensus 253 ~~g-G~~~~~-d~~g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~~~~~~~~~~~ 312 (346)
T PF07221_consen 253 EGG-GLFYSV-DRDGKPPDRSKRWWPQAEALKALLAAYELTGDEKYLDWARRVWDYIFRHFI 312 (346)
T ss_dssp TTS-SB-SEE-ETTS-BSST-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTB
T ss_pred CCC-eEEEEE-eCCCCccccCccccHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhCC
Confidence 000 000000 0001112333345666777777788899999999999988876 45443
No 15
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=96.25 E-value=0.05 Score=66.56 Aligned_cols=124 Identities=15% Similarity=0.191 Sum_probs=88.9
Q ss_pred ccCcccchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcC-CcccccCCchhhhhhhhcCCCccchhhHHHHHHHH
Q 002940 177 LRGHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIG-SGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGL 255 (863)
Q Consensus 177 l~Gh~~GhyLsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~~-dGYlga~p~~~~~r~~~l~~~W~pyYt~HKI~aGL 255 (863)
+.|... |+=|++..+..++|..+.+.+...|..|..|-++.. .+|+++- ++ +..-|
T Consensus 695 ~~G~~g--~~yal~~I~~~~~~~~l~~~~~~~i~~le~~v~~~~~~d~i~Gl---------------~g------~i~~L 751 (963)
T COG4403 695 FTGLSG--YFYALWKIYSVTRDNYLIQSAENSIRHLEILVQKSKDPDFINGL---------------AG------VICVL 751 (963)
T ss_pred ccccch--hhhhhHHHHHhcccHHHHHHHHHHHHHHHHHHhhccCcchhhcc---------------HH------HHHHH
Confidence 445444 444999999999999999999999999988866422 2333221 11 33446
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHHHHHhhhhhccchhhhhhcc-cccccc--chHHHHHHHHHhcCCHHHHHHHhhcc
Q 002940 256 LDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQT-LNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFD 329 (863)
Q Consensus 256 ld~Y~~tGn~~AL~va~~~ad~~~~r~~~~~~~~~~~~~~~~-l~~E~G--Gmne~L~~LY~~TGd~ryL~lA~~f~ 329 (863)
+..|+.+..++.+++|..+++++++..-.. ++ +..+ ..-.|| |+-.+|..||+.|||+++++.++...
T Consensus 752 ~~iYk~~~epk~l~~ais~~~~l~~~~v~~-----d~-s~~~l~gfshg~sgi~~tL~~ly~~T~e~~l~~~i~e~~ 822 (963)
T COG4403 752 VSIYKLTDEPKFLELAISLGRILMEKIVGN-----DS-SETVLLGFSHGASGIILTLLKLYEATGEESLLKKIKELL 822 (963)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHHhhcc-----cc-ccceecccccchHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 688999999999999999999998543211 11 1122 223445 67789999999999999999998753
No 16
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=96.16 E-value=0.041 Score=57.03 Aligned_cols=150 Identities=17% Similarity=0.158 Sum_probs=88.8
Q ss_pred CccCcccchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCcccccCCc-h-hhhhhhhcCCCccchhhHHH-HH
Q 002940 176 ELRGHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPT-E-QFDRLEALIPVWAPYYTIHK-IL 252 (863)
Q Consensus 176 ~l~Gh~~GhyLsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~-~-~~~r~~~l~~~W~pyYt~HK-I~ 252 (863)
|..+..-|+=+|.++.+|..|+|+++.+.+++.++-+..--+ ..|-+.-+.. . .++++-......+ .++|. -+
T Consensus 26 W~SamaQG~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~~~--~GG~~~~~~~~~~wyeEYp~~p~s~V--LNGfiysL 101 (189)
T PF06662_consen 26 WYSAMAQGQAISVLARAYQLTGDEKYLDAAKKALNSFKVPVE--EGGVLATFKNKYPWYEEYPTTPPSYV--LNGFIYSL 101 (189)
T ss_pred cHhHHHHHHHHHHHHHHHHhHCCHHHHHHHHHHHHHhcChHh--hCCeeEEecCCcEeEeecCCCCCCEE--eehHHHHH
Confidence 455666799999999999999999999999998887654433 3343332211 0 1122211111111 13333 56
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhh-ccch--hhhh---hcc--cc--ccccchHHHHHHHHHhcCCHHHH
Q 002940 253 AGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVI-KKYS--IERH---WQT--LN--EEAGGMNDVLYKLFCITQDPKHL 322 (863)
Q Consensus 253 aGLld~Y~~tGn~~AL~va~~~ad~~~~r~~~~~-~~~~--~~~~---~~~--l~--~E~GGmne~L~~LY~~TGd~ryL 322 (863)
.||-|.+..+++++|.++-.+-.+=+.+.+...- ..++ +-+| ... +. .-+...-.-|.+||.+|||+.+.
T Consensus 102 ~GLyd~~~~~~~~~A~~lf~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~~~~~~~a~~~YH~lHi~qL~~L~~it~d~~f~ 181 (189)
T PF06662_consen 102 IGLYDYYRLTGDEEAKELFDKGLKSLKKMLPLYDTGSWSRYDLRHFTLGNAPNIARWDYHRLHIQQLKWLYSITGDPIFK 181 (189)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhcCCCchhhccccccccCcCcCcchHHHHHHHHHHHHHHhcCCHHHH
Confidence 7999999999999988876665555544332110 0010 0000 000 00 01111225788999999999999
Q ss_pred HHHhhcc
Q 002940 323 MLAHLFD 329 (863)
Q Consensus 323 ~lA~~f~ 329 (863)
+.|+++.
T Consensus 182 ~~a~rW~ 188 (189)
T PF06662_consen 182 EYAERWK 188 (189)
T ss_pred HHHHHhc
Confidence 9999864
No 17
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=96.05 E-value=0.1 Score=65.51 Aligned_cols=214 Identities=14% Similarity=0.007 Sum_probs=120.4
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhc-CCcccccCCchhhhhhhhcCCCccchhhHHHHHHHHHHHHHHcCCHh
Q 002940 188 ASALMWASTHNESLKEKMSAVVSALSACQKEI-GSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAE 266 (863)
Q Consensus 188 ala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~-~dGYlga~p~~~~~r~~~l~~~W~pyYt~HKI~aGLld~Y~~tGn~~ 266 (863)
++..++..++|+.+++.+.++++.+.+..... ..+++.+. ++ +...|+..|+.+++++
T Consensus 549 ~L~~l~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~D~~~G~-------------------aG--ii~~Ll~l~~~~~~~~ 607 (825)
T cd04792 549 ALTHLGKLLKDDRLLNLAKEILDLIDELIEKDEKLDFISGA-------------------AG--LILVLLSLYELFLSER 607 (825)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccCCCEeeec-------------------HH--HHHHHHHHHhccCChH
Confidence 45566778999999999999988876554310 11222111 11 3445667899999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchh-hhhhcccccccc--chHHHHHHHHHhcCCHHHHHHHhhcccc--cccchhhc--
Q 002940 267 ALRMTTWMVEYFYNRVQNVIKKYSI-ERHWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDKP--CFLGLLAL-- 339 (863)
Q Consensus 267 AL~va~~~ad~~~~r~~~~~~~~~~-~~~~~~l~~E~G--Gmne~L~~LY~~TGd~ryL~lA~~f~~~--~~~~~la~-- 339 (863)
.++++.+.++++.+...+. ..+.. ........-.|| |+-.+|..+|+.|+|++|++.|+...+. ..+.+...
T Consensus 608 ~l~~a~~~~~~l~~~~~~~-~~~~~~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~~~w 686 (825)
T cd04792 608 FLDLALKCGDHLLENASNE-DGGIGPAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWNW 686 (825)
T ss_pred HHHHHHHHHHHHHHhhhhc-cCCcccccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhhcCC
Confidence 9999999999987543211 00000 000001111334 7889999999999999999998875431 11111000
Q ss_pred -cCCCCCCCcccCCCCeeeh--hhHHHHH--hCCchhhc--cceeccccCCCCCCCCcCCccccccCCCCCccchhHHHH
Q 002940 340 -QADDISGFHSNTHIPIVIG--SQMRYEV--TGDQLHKE--GHQLESSGTNIGHFNFKSDPKRLASNLDSNTEESCTTYN 412 (863)
Q Consensus 340 -~~D~l~~~HanthiP~~~G--~A~~Y~~--TGD~~yl~--~h~y~tGG~s~~E~~~f~~p~~l~~~l~~~~~EtCat~n 412 (863)
..+.....-+-.|...-++ ....++. .+|+.+.+ .+.. ..-. .. .+ ....+=+|...+
T Consensus 687 ~~~~~~~~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~-~~~~--~~--~~----------~~~~slCHG~~G 751 (825)
T cd04792 687 PRKDGNSFSAAWCHGAPGILLARLELLKFNDLDDEELKEEIEIAL-KTTL--KE--GF----------GNNHSLCHGDLG 751 (825)
T ss_pred CCcCcCCCCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHH-HHHH--Hh--cC----------CCCCeecCCCcc
Confidence 0000000011234433333 3455777 56666655 1110 0000 00 00 112334566677
Q ss_pred HHHHHHHhhcccccchHHHHHHHHHh
Q 002940 413 MLKVSRHLFRWTKEIAYADYYERSLT 438 (863)
Q Consensus 413 mlkl~~~L~~~tgD~~YaD~~ERaly 438 (863)
.+.+...+.+.++|.+|.+.+++.+-
T Consensus 752 il~~ll~~~~~~~~~~~~~~a~~~~~ 777 (825)
T cd04792 752 NLEILLYAAKAFGDEKLQELANSLAI 777 (825)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 78888888889999999988887653
No 18
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=95.72 E-value=0.19 Score=59.73 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhhccchh-----------hhhh---ccccccccchHHHHHHHHHhc
Q 002940 251 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSI-----------ERHW---QTLNEEAGGMNDVLYKLFCIT 316 (863)
Q Consensus 251 I~aGLld~Y~~tGn~~AL~va~~~ad~~~~r~~~~~~~~~~-----------~~~~---~~l~~E~GGmne~L~~LY~~T 316 (863)
++.|||.+|.++|++..|+.|+.++|.+..-|.. ..+.+. ...| ...-.|.|.+..-+..|.++|
T Consensus 160 ~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdT-ptgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lT 238 (522)
T PTZ00470 160 VLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNE-DTGFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEIT 238 (522)
T ss_pred hHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcC-CCCCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhh
Confidence 6799999999999999999999999999876642 011110 0011 112246677777788999999
Q ss_pred CCHHHHHHHhhccc
Q 002940 317 QDPKHLMLAHLFDK 330 (863)
Q Consensus 317 Gd~ryL~lA~~f~~ 330 (863)
||++|.+.|++..+
T Consensus 239 Gd~kY~~~a~~i~~ 252 (522)
T PTZ00470 239 GDPKYAEYVDKVMD 252 (522)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998753
No 19
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=95.17 E-value=0.13 Score=57.49 Aligned_cols=173 Identities=14% Similarity=0.108 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhhccchhhhhhccccccccchHHHHHHHHHhcCCHHHHHHHhhccc
Q 002940 251 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDK 330 (863)
Q Consensus 251 I~aGLld~Y~~tGn~~AL~va~~~ad~~~~r~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~ryL~lA~~f~~ 330 (863)
+..||+.+|+.||+++.++.+.+.++.+.....+. . .++.- .+...+..+|++|||++|++.+....+
T Consensus 30 ~~~gl~~~~~~tgd~~~~~~a~~~~~~~~~~~~~~---~-------~~d~~--~~g~~~~~~y~~t~d~~y~~~~~~~a~ 97 (336)
T PF07470_consen 30 FWYGLLEAYEYTGDERYLDYAERWADRFIEEDGSD---Y-------NLDDH--DIGFLLLDLYERTGDEKYKDAAIQAAD 97 (336)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTT---T-------SCCGT--THHHHHHHHHHHH-THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccCCc---c-------CCchh--hhHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55788899999999999999999888776543320 0 01110 123566889999999999999877544
Q ss_pred ccccchhhccCCCCCC-CcccCCCC-e-----eeh---hhHHHHHhCCchhhc----------ccee--ccccCCCCCCC
Q 002940 331 PCFLGLLALQADDISG-FHSNTHIP-I-----VIG---SQMRYEVTGDQLHKE----------GHQL--ESSGTNIGHFN 388 (863)
Q Consensus 331 ~~~~~~la~~~D~l~~-~HanthiP-~-----~~G---~A~~Y~~TGD~~yl~----------~h~y--~tGG~s~~E~~ 388 (863)
..+... .++.-.+ .|...... + .+. .+..++.|||++|++ ++.| .||-.
T Consensus 98 ~~l~~~---~~~~~G~~~~~~~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~d~~tGl~------ 168 (336)
T PF07470_consen 98 WLLARR---PRTSDGGFWHNRPYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYLYDPETGLY------ 168 (336)
T ss_dssp HHHHTS---CBECTGCBECTTTSTTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB-TTTSSB------
T ss_pred HHHHhC---CCCCCCccccCCCCCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhccCCCCCce------
Confidence 111000 0001111 12111111 1 122 345589999999988 2222 12211
Q ss_pred CcCCccccccCCC-C---CccchhHHHHHHHHHHHhhc-ccccchHHHHHHHHHhhhcccccC
Q 002940 389 FKSDPKRLASNLD-S---NTEESCTTYNMLKVSRHLFR-WTKEIAYADYYERSLTNGVLGIQR 446 (863)
Q Consensus 389 ~f~~p~~l~~~l~-~---~~~EtCat~nmlkl~~~L~~-~tgD~~YaD~~ERalyN~iLa~q~ 446 (863)
.+....-..... + ...-.-+.+++..+.+.|=. ......+.+.+++.+ .++..-|+
T Consensus 169 -~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~-~~l~~~q~ 229 (336)
T PF07470_consen 169 -YHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLA-DALARYQD 229 (336)
T ss_dssp -ESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-HHHHTTST
T ss_pred -eeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHH-HHHHhcCC
Confidence 110000000000 0 12345677888888777644 233477888888888 55777775
No 20
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=95.16 E-value=0.23 Score=54.57 Aligned_cols=126 Identities=11% Similarity=-0.040 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCcccccCCchhhhhhhhcCCCccchhhHHHHHHHHHHHHHHcCC
Q 002940 185 YLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADN 264 (863)
Q Consensus 185 yLsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~~~~~r~~~l~~~W~pyYt~HKI~aGLld~Y~~tGn 264 (863)
..-++..+|..|+|+++++.+.+.++.+.+......+||+-.-.. .+ ....|.-=..+ |...++..|+.+++
T Consensus 144 i~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~~~g~~~~~~~---~~---~~~~wchG~aG--i~~~l~~l~~~~~d 215 (321)
T cd04791 144 IALFLLRLYKATGDSRYLELAEEALDKELARAVVDDGGLLQVDEG---AR---LLPYLCSGSAG--LGLLMLRLEAITGD 215 (321)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccCCCCceEcCCC---Cc---cCcccCCCcHH--HHHHHHHHHHhcCC
Confidence 344678889999999999999999999887765445666531100 00 01112111122 44556678899999
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhccchhhhhhcccccccc--chHHHHHHHHHhcCCHHHHHHHhhccc
Q 002940 265 AEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDK 330 (863)
Q Consensus 265 ~~AL~va~~~ad~~~~r~~~~~~~~~~~~~~~~l~~E~G--Gmne~L~~LY~~TGd~ryL~lA~~f~~ 330 (863)
++.++.+.++.+.+.+.... . ..-| +| |+.++|..+++.|+|++|++.|+++.+
T Consensus 216 ~~~~~~a~~~~~~~~~~~~~----~-------~~lc-hG~~G~~~~l~~~~~~~~~~~~~~~~~~~~~ 271 (321)
T cd04791 216 KRWRDEADGIAHAALSSCYA----N-------PGLF-SGTAGLGAHLNDLAAEGDNALYKAAAERLAL 271 (321)
T ss_pred HHHHHHHHHHHHHHhhhhcc----C-------cccc-CCcHhHHHHHHhhcccccChHHHHHHHHHHH
Confidence 99999998888877643211 0 1111 33 677899999999999999999998754
No 21
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=95.03 E-value=0.1 Score=58.46 Aligned_cols=174 Identities=21% Similarity=0.276 Sum_probs=96.3
Q ss_pred cchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhc-CCcccccCCchhhhhhhhcCCCccch--h--hHHHHHHHHH
Q 002940 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEI-GSGYLSAFPTEQFDRLEALIPVWAPY--Y--TIHKILAGLL 256 (863)
Q Consensus 182 ~GhyLsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~-~dGYlga~p~~~~~r~~~l~~~W~py--Y--t~HKI~aGLl 256 (863)
-...+-|+|. +..|+|++.++.+++.++.|.+.-... ..||...++ .+|.+. . .+|.+.+ ++
T Consensus 83 ~af~l~ala~-~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~-----------~~~~~~r~~n~~mhl~eA-~l 149 (346)
T PF07221_consen 83 QAFALLALAE-ARATGDPEALELAEQTLEFLERRFWDPEGGGYRESFD-----------PDWSPPRGQNPHMHLLEA-FL 149 (346)
T ss_dssp HHHHHHHHHH-HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EET-----------TTSSCBEEHHHHHHHHHH-HH
T ss_pred HHHHHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcccccCcceeccC-----------CccccCCCCChhHHHHHH-HH
Confidence 3456778888 788999999999999999887664321 234443332 222221 2 3566665 45
Q ss_pred HHHHHcCCHhHHHHHHHHHHHHHHHhhh----hhccchhhhhhcccc------------ccccc-hH--HHHHHHH--Hh
Q 002940 257 DQYTYADNAEALRMTTWMVEYFYNRVQN----VIKKYSIERHWQTLN------------EEAGG-MN--DVLYKLF--CI 315 (863)
Q Consensus 257 d~Y~~tGn~~AL~va~~~ad~~~~r~~~----~~~~~~~~~~~~~l~------------~E~GG-mn--e~L~~LY--~~ 315 (863)
+.|+.+|+++.++.+.++.+.+..++-. .+....+.. |.++. .|.|= ++ ..|.++. ..
T Consensus 150 ~l~~~~~~~~~~~~a~~l~~~~~~~f~~~~~g~~~E~f~~d-w~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~ 228 (346)
T PF07221_consen 150 ALYEATGDPRYLDRAEELLDLFLDRFADPESGALPEFFDRD-WNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTG 228 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHCCTTEETSEEETT-SEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHHHhccCeeeeeeccc-cccccccccccccccCccCCchhHHHHHHHHHHHHhcc
Confidence 8999999999999999999999865532 111111112 22211 22221 11 2344544 35
Q ss_pred cCCHHHHHHHhhcccccccchhhccCCCCC-CC----cccCCCC-----------eeehhhHHHHHhCCchhhc
Q 002940 316 TQDPKHLMLAHLFDKPCFLGLLALQADDIS-GF----HSNTHIP-----------IVIGSQMRYEVTGDQLHKE 373 (863)
Q Consensus 316 TGd~ryL~lA~~f~~~~~~~~la~~~D~l~-~~----HanthiP-----------~~~G~A~~Y~~TGD~~yl~ 373 (863)
.+++++++.|+.+....+ ..+-|.-. ++ ..+.+.+ .+.+.+..|+.|||+.|++
T Consensus 229 ~~~~~~~~~a~~l~~~~~----~~G~d~~~gG~~~~~d~~g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~ 298 (346)
T PF07221_consen 229 RGDPDWLERARRLFDFAL----EHGWDREGGGLFYSVDRDGKPPDRSKRWWPQAEALKALLAAYELTGDEKYLD 298 (346)
T ss_dssp CT-HTHHHHHHHHHHHHH----HHHBSTTTSSB-SEEETTS-BSST-EEHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred cccHHHHHHHHHHHHHHH----HheEecCCCeEEEEEeCCCCccccCccccHHHHHHHHHHHHHhccCcHHHHH
Confidence 588999988877543211 00111110 11 1112222 1467888999999999987
No 22
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=94.77 E-value=0.74 Score=50.46 Aligned_cols=219 Identities=15% Similarity=0.039 Sum_probs=125.1
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh----cCCcccccCCchhhhhhhhcCCCccchhhHHHHHHHHHHHHHHc
Q 002940 187 SASALMWASTHNESLKEKMSAVVSALSACQKE----IGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYA 262 (863)
Q Consensus 187 sala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~----~~dGYlga~p~~~~~r~~~l~~~W~pyYt~HKI~aGLld~Y~~t 262 (863)
-++..+|..++|+++++.+..++..+.+.-.. ...+++.+ . ++ ++..|+..|+.+
T Consensus 57 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~G---------------~----aG--~~~~ll~~~~~~ 115 (343)
T cd04434 57 YALAALSKGLGDQELLKELLELLLLLVELILEDLKDLNYDLLSG---------------L----AG--LLLALLLLYKTF 115 (343)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhcccCCCCcceeec---------------h----HH--HHHHHHHHHHhc
Confidence 35666777889999999999998877654320 01111111 1 22 445566778888
Q ss_pred CCHhHHHHHHHHHHHHHHHhhhhhccchh---hhhh-cccccccc--chHHHHHHHHHhcCCHHHHHHHhhccc---ccc
Q 002940 263 DNAEALRMTTWMVEYFYNRVQNVIKKYSI---ERHW-QTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDK---PCF 333 (863)
Q Consensus 263 Gn~~AL~va~~~ad~~~~r~~~~~~~~~~---~~~~-~~l~~E~G--Gmne~L~~LY~~TGd~ryL~lA~~f~~---~~~ 333 (863)
+++..++++.+.++++.+...+....... .... ....-.|| |+-.+|..+|+.+.++.+.++++.... ..+
T Consensus 116 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (343)
T cd04434 116 GEEIFLELIRKILDYLLELGKNGDGKIRWPMYFPEGRVNLGLAHGLAGILLALLLLYKKTVDKSLEALIKALLKYERRLQ 195 (343)
T ss_pred CCcCHHHHHHHHHHHHHHhhhhccCCCceeeeccCCccccchhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHcc
Confidence 99999999999999998654321111000 0000 00111233 677899999999988888887765432 111
Q ss_pred c-----chhhccCCCCCCCcccCCCCe--eehhhHHHHHhCCchhhc--cce----eccccCCCCCCCCcCCccccccCC
Q 002940 334 L-----GLLALQADDISGFHSNTHIPI--VIGSQMRYEVTGDQLHKE--GHQ----LESSGTNIGHFNFKSDPKRLASNL 400 (863)
Q Consensus 334 ~-----~~la~~~D~l~~~HanthiP~--~~G~A~~Y~~TGD~~yl~--~h~----y~tGG~s~~E~~~f~~p~~l~~~l 400 (863)
. ++.....+.......-.|... +......|+.++|+.+.+ .+. ...+- . .
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----------~-- 258 (343)
T cd04434 196 DDSGGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGL----L-----------E-- 258 (343)
T ss_pred CCCCCCCCCCCCCCCccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhh----c-----------c--
Confidence 1 100000000001111223332 233456699999988877 111 11100 0 0
Q ss_pred CCCccchhHHHHHHHHHHHhhcccccchHHHHHHHHHhhhcccc
Q 002940 401 DSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGI 444 (863)
Q Consensus 401 ~~~~~EtCat~nmlkl~~~L~~~tgD~~YaD~~ERalyN~iLa~ 444 (863)
....+=.|...+.+....+|.+.+++.+|.+..++.. +.++..
T Consensus 259 ~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~-~~~~~~ 301 (343)
T cd04434 259 LKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALALA-LLLISH 301 (343)
T ss_pred CCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHHH-HHHHHH
Confidence 1234455667788888889999999999998886665 455543
No 23
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=94.59 E-value=0.092 Score=61.51 Aligned_cols=187 Identities=17% Similarity=0.105 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHc--CCHhHHHHHHHHHHHHHHHhhhhhccchh-----h-----hhh--ccccccccchHHHHHHHHHhc
Q 002940 251 ILAGLLDQYTYA--DNAEALRMTTWMVEYFYNRVQNVIKKYSI-----E-----RHW--QTLNEEAGGMNDVLYKLFCIT 316 (863)
Q Consensus 251 I~aGLld~Y~~t--Gn~~AL~va~~~ad~~~~r~~~~~~~~~~-----~-----~~~--~~l~~E~GGmne~L~~LY~~T 316 (863)
++.|||.+|.++ +++..|+.|+.+||.+..-|.. ..+.+. . ++. ...-.|.|.+..-+..|.++|
T Consensus 82 ~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t-~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lT 160 (452)
T PF01532_consen 82 VLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDT-PTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLT 160 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSS-SSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccC-CCccccceeeecccCCCCCCCCcccccccccceechhHHHHHh
Confidence 789999999999 9999999999999998866642 111111 0 111 011136677778889999999
Q ss_pred CCHHHHHHHhhcccccccchhhccCCCCCCCcc--cCCCC----eeeh---------hhHHHHHhC--Cchhhc------
Q 002940 317 QDPKHLMLAHLFDKPCFLGLLALQADDISGFHS--NTHIP----IVIG---------SQMRYEVTG--DQLHKE------ 373 (863)
Q Consensus 317 Gd~ryL~lA~~f~~~~~~~~la~~~D~l~~~Ha--nthiP----~~~G---------~A~~Y~~TG--D~~yl~------ 373 (863)
||++|.+.|++..+.-.-.......+.|-+.+- .+..+ .-+| ..+.|.++| |+.|++
T Consensus 161 gd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d~~~~~~~~~a~ 240 (452)
T PF01532_consen 161 GDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTDEQYRDMYDEAV 240 (452)
T ss_dssp S-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTTHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccchHHHHHHHHHH
Confidence 999999999986532110000000111111111 11111 1123 456688999 888877
Q ss_pred ----cceeccccCCCCCCCCcCCccc--ccc-CCCCCccchhHHHHHHHHHHHhhcccccchHHHHHHHHHhhhc
Q 002940 374 ----GHQLESSGTNIGHFNFKSDPKR--LAS-NLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGV 441 (863)
Q Consensus 374 ----~h~y~tGG~s~~E~~~f~~p~~--l~~-~l~~~~~EtCat~nmlkl~~~L~~~tgD~~YaD~~ERalyN~i 441 (863)
+|+.........+...|-.... ... ..+....-+|-.-+|+.+..+++ ++..+.+..++.+....
T Consensus 241 ~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~---~~~~~~~~A~~l~~~C~ 312 (452)
T PF01532_consen 241 DAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLF---NDEGDLELAEELTETCY 312 (452)
T ss_dssp HHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTT---TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhccc---CchhHHHHHHHHHHHHH
Confidence 3332221111101001111100 000 11345678999999999999988 34666666666554443
No 24
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.47 E-value=0.13 Score=59.74 Aligned_cols=124 Identities=14% Similarity=0.077 Sum_probs=85.6
Q ss_pred ccchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCcccccCCchhhhhhhhcCCCccchhhHHH-HHHHHHHHH
Q 002940 181 FVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHK-ILAGLLDQY 259 (863)
Q Consensus 181 ~~GhyLsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~~~~~r~~~l~~~W~pyYt~HK-I~aGLld~Y 259 (863)
..||-+.|+--.|..||...+.+-+.++.|.++..-. ..++ =.+.|++|- |..+|++-|
T Consensus 132 ~aghLieg~va~~qaTGkr~lldV~~rlADhi~tvfg----------------p~~~----q~~g~~gH~eielAl~~Ly 191 (589)
T COG3533 132 CAGHLIEGGVAAHQATGKRRLLDVVCRLADHIATVFG----------------PEED----QVPGYCGHPEIELALAELY 191 (589)
T ss_pred HhHHHHhhhhHHHHhhCcchHHHHHHHHHHhhhhhcC----------------cccc----ccccccCCCchhHHHHHHH
Confidence 4689899888889999999999999999888864433 1111 124456664 788898999
Q ss_pred HHcCCHhHHHHHHHHHHHHHHHhhhhhccchhhhhhccccccccch--HHHHHHHHHhcCCHHHHHHHhhccc
Q 002940 260 TYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGM--NDVLYKLFCITQDPKHLMLAHLFDK 330 (863)
Q Consensus 260 ~~tGn~~AL~va~~~ad~~~~r~~~~~~~~~~~~~~~~l~~E~GGm--ne~L~~LY~~TGd~ryL~lA~~f~~ 330 (863)
+.||+++.|++|..+.++--. .+ ......++ ..+|.-+ -| -..+++||++|||+.+...+.+|.+
T Consensus 192 ~~Tg~~rYL~LA~~Fi~~rg~--~P-~~~rg~e~--~~gHAvr-~iyl~~G~A~l~~~~gDds~r~~~~~lW~ 258 (589)
T COG3533 192 RLTGDQRYLDLARRFIHQRGV--EP-LAQRGDEL--EGGHAVR-QIYLYIGAADLAEETGDDSLRQAAEFLWQ 258 (589)
T ss_pred HHhcChHHHHHHHHHHHHhcc--Ch-hhcCchhh--hhhhHHH-HHHHhhhHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999988776432 12 11111111 1222110 01 1467899999999999999998864
No 25
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=94.41 E-value=0.18 Score=56.23 Aligned_cols=68 Identities=21% Similarity=0.193 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhhccchhhhhhccccccccchHHHHHHHHHhcCCHHHHHHHhhcc
Q 002940 251 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFD 329 (863)
Q Consensus 251 I~aGLld~Y~~tGn~~AL~va~~~ad~~~~r~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~ryL~lA~~f~ 329 (863)
.+.|+..+|+.||+++.|+.++..+|....+=+ ++...+.. +. +...|+-||+.|||++||++|....
T Consensus 41 ~lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~~g--~~~~~id~---i~------~g~~L~~L~e~T~~~~Yl~~a~~~a 108 (357)
T COG4225 41 FLYGVARAYEATGDAEYLDYLKTWFDEQIDEGG--LPPRNIDH---IA------AGLTLLPLYEQTGDPRYLEAAIKLA 108 (357)
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHHHHhhhccCC--CCccchhh---hc------cCceeeehhhhhCCHHHHHHHHHHH
Confidence 456888999999999999999988888764311 11111110 00 1146889999999999999988764
No 26
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=94.03 E-value=0.58 Score=51.26 Aligned_cols=178 Identities=15% Similarity=-0.022 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCcccccCCchhhhhhhhcCCCccchhhHHHHHHHHHHHHHHcCC
Q 002940 185 YLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADN 264 (863)
Q Consensus 185 yLsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~~~~~r~~~l~~~W~pyYt~HKI~aGLld~Y~~tGn 264 (863)
.+-++..++..++|+.+.+.+..+++.+.+.+....+++--.... . . ......|.-=..+ |...|+..+..+.+
T Consensus 104 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~-~--~~~~~g~~HG~~G--i~~~l~~~~~~~~~ 177 (343)
T cd04434 104 LLLALLLLYKTFGEEIFLELIRKILDYLLELGKNGDGKIRWPMYF-P-E--GRVNLGLAHGLAG--ILLALLLLYKKTVD 177 (343)
T ss_pred HHHHHHHHHHhcCCcCHHHHHHHHHHHHHHhhhhccCCCceeeec-c-C--CccccchhhhhHH--HHHHHHHHHHhcCC
Confidence 345566777888999999999999999998887544443211000 0 0 0011223222233 56667778888888
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhccch----hhhhhcccccccc--chHHHHHHHHHhcCCHHHHHHHhhcccccccchhh
Q 002940 265 AEALRMTTWMVEYFYNRVQNVIKKYS----IERHWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLA 338 (863)
Q Consensus 265 ~~AL~va~~~ad~~~~r~~~~~~~~~----~~~~~~~l~~E~G--Gmne~L~~LY~~TGd~ryL~lA~~f~~~~~~~~la 338 (863)
++..+++.....+..+.+...-..++ .........--+| |+..++..+|+.|+|+++++.++...+..+.....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (343)
T cd04434 178 KSLEALIKALLKYERRLQDDSGGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGLL 257 (343)
T ss_pred hhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhc
Confidence 88788777777766543321000000 0000001111244 78899999999999999999988765422211100
Q ss_pred ccCCCCCCCcccCCCCee--ehhhHHHHHhCCchhhc
Q 002940 339 LQADDISGFHSNTHIPIV--IGSQMRYEVTGDQLHKE 373 (863)
Q Consensus 339 ~~~D~l~~~HanthiP~~--~G~A~~Y~~TGD~~yl~ 373 (863)
+ ...+...|...- ......|+.|+|+.+++
T Consensus 258 ---~--~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~ 289 (343)
T cd04434 258 ---E--LKNPGLCHGIAGNLLILLLLYKLTGDLKFLA 289 (343)
T ss_pred ---c--CCCCCcCcCccchHHHHHHHHHHhCCHHHHH
Confidence 0 111233455543 33566799999999887
No 27
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=93.94 E-value=1.4 Score=55.53 Aligned_cols=208 Identities=17% Similarity=0.157 Sum_probs=112.3
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHhc-----CCcccccCCchhhhhhhhcCCCccchhhHHHHHHHHHHHHHHcC
Q 002940 189 SALMWASTHNESLKEKMSAVVSALSACQKEI-----GSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYAD 263 (863)
Q Consensus 189 la~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~-----~dGYlga~p~~~~~r~~~l~~~W~pyYt~HKI~aGLld~Y~~tG 263 (863)
++..+..|+|+.+++.+.+.++.+.+.-+.. ..|.+.+ ++. |...++..|..++
T Consensus 500 l~~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~gl~~G---------------~aG------i~~~L~~l~~~~~ 558 (825)
T cd04792 500 LAYLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFSG---------------LGG------ILYALTHLGKLLK 558 (825)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHHhcccccccCceeEec---------------hhH------HHHHHHHHHHHcC
Confidence 3445567899999999998888776543311 1111111 111 2333446678899
Q ss_pred CHhHHHHHHHHHHHHHHHhhhhhccchhhhhhccccccccchHHHHHHHHHhcCCHHHHHHHhhcccccccchhhccCCC
Q 002940 264 NAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADD 343 (863)
Q Consensus 264 n~~AL~va~~~ad~~~~r~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~ryL~lA~~f~~~~~~~~la~~~D~ 343 (863)
+++.++.+.+..+.+.....+ . .....++.. .|+-.+|..+|+.|++++++++|+...+.-+.. ....+.
T Consensus 559 ~~~~~~~a~~~~~~l~~~~~~------~-~~~D~~~G~-aGii~~Ll~l~~~~~~~~~l~~a~~~~~~l~~~--~~~~~~ 628 (825)
T cd04792 559 DDRLLNLAKEILDLIDELIEK------D-EKLDFISGA-AGLILVLLSLYELFLSERFLDLALKCGDHLLEN--ASNEDG 628 (825)
T ss_pred CHHHHHHHHHHHHHHHHhhcc------c-cCCCEeeec-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHh--hhhccC
Confidence 999999999888877543211 0 001122222 256688999999999999999988765421110 000110
Q ss_pred CCCC------cccCCCCe--eehhhHHHHHhCCchhhc--c-------ceeccccCCCCCCCCcCCccccccCCCCCccc
Q 002940 344 ISGF------HSNTHIPI--VIGSQMRYEVTGDQLHKE--G-------HQLESSGTNIGHFNFKSDPKRLASNLDSNTEE 406 (863)
Q Consensus 344 l~~~------HanthiP~--~~G~A~~Y~~TGD~~yl~--~-------h~y~tGG~s~~E~~~f~~p~~l~~~l~~~~~E 406 (863)
.... ..-.|... +...+..|+.|+|++|++ . ..+..++ . .|... .......-
T Consensus 629 ~~~~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~----~--~w~~~-----~~~~~~~~ 697 (825)
T cd04792 629 GIGPAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEG----W--NWPRK-----DGNSFSAA 697 (825)
T ss_pred CcccccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhh----c--CCCCc-----CcCCCCCc
Confidence 0000 01112221 222456799999999987 1 1111110 0 23210 00111122
Q ss_pred hh-HHHHHHHHHHHhhcc--cccchHHHHHHHHHh
Q 002940 407 SC-TTYNMLKVSRHLFRW--TKEIAYADYYERSLT 438 (863)
Q Consensus 407 tC-at~nmlkl~~~L~~~--tgD~~YaD~~ERaly 438 (863)
-| .+.+.+.....+.+. ..|..+.+.+++++-
T Consensus 698 WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~ 732 (825)
T cd04792 698 WCHGAPGILLARLELLKFNDLDDEELKEEIEIALK 732 (825)
T ss_pred ccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 33 345555555566777 578888888888764
No 28
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=93.25 E-value=0.4 Score=53.56 Aligned_cols=116 Identities=19% Similarity=0.264 Sum_probs=76.5
Q ss_pred cchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCcccccCCchhhhhhhhcCCCccchhhHHHHHHH--HHHHH
Q 002940 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAG--LLDQY 259 (863)
Q Consensus 182 ~GhyLsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~~~~~r~~~l~~~W~pyYt~HKI~aG--Lld~Y 259 (863)
.|-.|.+++.+|..|+|+++.+.+..++|... + .+| +|+.. .++ |.+| |+.-|
T Consensus 38 ~GV~lyGv~~~~eAT~d~~yl~~l~~~~d~~i---~--~~g----~~~~~------id~----------i~~g~~L~~L~ 92 (357)
T COG4225 38 QGVFLYGVARAYEATGDAEYLDYLKTWFDEQI---D--EGG----LPPRN------IDH----------IAAGLTLLPLY 92 (357)
T ss_pred ccchHHHHHHHHHHcCcHHHHHHHHHHHHhhh---c--cCC----CCccc------hhh----------hccCceeeehh
Confidence 34558899999999999999999999988764 1 334 22111 111 1122 33679
Q ss_pred HHcCCHhHHHHHHHHHHHHHHHh--hh-hhc---cchhhhhhccccccccchH-HHHHHHHHhcCCHHHHHHHhh
Q 002940 260 TYADNAEALRMTTWMVEYFYNRV--QN-VIK---KYSIERHWQTLNEEAGGMN-DVLYKLFCITQDPKHLMLAHL 327 (863)
Q Consensus 260 ~~tGn~~AL~va~~~ad~~~~r~--~~-~~~---~~~~~~~~~~l~~E~GGmn-e~L~~LY~~TGd~ryL~lA~~ 327 (863)
+.||++++|+.++++++|+..-. ++ .++ +++ +++|. +.-+ |. .-++++-+.+|+++|++-|-+
T Consensus 93 e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~~~p-~Q~W~--DtL~--Ma~~F~ak~g~~~~~~e~~d~~~~ 162 (357)
T COG4225 93 EQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHKVKYP-HQMWL--DTLY--MAGLFLAKYGQVTGRPEYFDEALY 162 (357)
T ss_pred hhhCCHHHHHHHHHHHHHHhhCcccCCCccccccCch-hHhhh--cchh--hhhHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999999998533 11 000 122 23332 2221 33 456788899999999987754
No 29
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=92.51 E-value=1.1 Score=50.44 Aligned_cols=181 Identities=13% Similarity=0.044 Sum_probs=100.1
Q ss_pred cchHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHhcCCcccccCCchhhhhhhhc-CCCccchhhHHHHHHHHHHHH
Q 002940 182 VGHYLSASALMWASTHN-ESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEAL-IPVWAPYYTIHKILAGLLDQY 259 (863)
Q Consensus 182 ~GhyLsala~~ya~TgD-~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~~~~~r~~~l-~~~W~pyYt~HKI~aGLld~Y 259 (863)
..-++.++..+|..+++ +.+++.++.+++.+.+.-+...+......+. .+ .+.+. .-.|+-=..+ |...|+..+
T Consensus 103 ~aG~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~-~~-~~~~~~~~G~aHG~aG--I~~~L~~~~ 178 (343)
T cd04794 103 RAGYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPL-MY-EWHGKEYLGAAHGLAG--ILYILLQTP 178 (343)
T ss_pred HHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCc-cc-cccCceecchhhhHHH--HHHHHHhhh
Confidence 34467788888888874 3466777777776665422111221111110 00 01100 0112211223 556677788
Q ss_pred HHcCCHhHHHHHHHHHHHHHHHhhhhhccchhh--h--hhcccccccc--chHHHHHHHHHhcCCHHHHHHHhhcccccc
Q 002940 260 TYADNAEALRMTTWMVEYFYNRVQNVIKKYSIE--R--HWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDKPCF 333 (863)
Q Consensus 260 ~~tGn~~AL~va~~~ad~~~~r~~~~~~~~~~~--~--~~~~l~~E~G--Gmne~L~~LY~~TGd~ryL~lA~~f~~~~~ 333 (863)
..+++++.++.+.+..+|+.+...+. ..++.. . ......--+| |+..++..+|+.++|+++++.|+...+..+
T Consensus 179 ~~~~~~~~~~~i~~~i~~~~~~~~~~-g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 257 (343)
T cd04794 179 LFLLKPSLAPLIKRSLDYLLSLQFPS-GNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELIW 257 (343)
T ss_pred hhcCCccHHHHHHHHHHHHHHhhccC-CCCCCccCCCCCCccccccCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 88899999999999999997653211 111100 0 0001111245 677899999999999999999887554221
Q ss_pred cchhhccCCCCCCCcccCCCCe--eehhhHHHHHhCCchhhc
Q 002940 334 LGLLALQADDISGFHSNTHIPI--VIGSQMRYEVTGDQLHKE 373 (863)
Q Consensus 334 ~~~la~~~D~l~~~HanthiP~--~~G~A~~Y~~TGD~~yl~ 373 (863)
. ...+..-+...|.-. ..+..+.|+.|+|++|++
T Consensus 258 ~------~g~~~~~~~lCHG~~G~~~~lL~~~~~~~~~~~~~ 293 (343)
T cd04794 258 K------RGLLKKGPGLCHGIAGNAYAFLLLYRLTGDLKYLY 293 (343)
T ss_pred H------hCCccCCCccccCccchHHHHHHHHHHhCcHHHHH
Confidence 0 011110112334432 344667799999999987
No 30
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=92.44 E-value=0.17 Score=52.58 Aligned_cols=121 Identities=19% Similarity=0.145 Sum_probs=65.2
Q ss_pred HHHHHHHHhcCCHHHHHHHhhcccccccchhhcc----CCC-CCC--CcccCCCC--ee-------ehhhHHHHHhCCch
Q 002940 307 DVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQ----ADD-ISG--FHSNTHIP--IV-------IGSQMRYEVTGDQL 370 (863)
Q Consensus 307 e~L~~LY~~TGd~ryL~lA~~f~~~~~~~~la~~----~D~-l~~--~HanthiP--~~-------~G~A~~Y~~TGD~~ 370 (863)
.+|+++|++|||++||+.|++..+....-....| ... ..+ .+. +.-| ++ +|.-..+..|++++
T Consensus 37 s~l~RAy~~t~d~~Yl~aA~~al~~f~~~~~~GG~~~~~~~~~~wyeEYp-~~p~s~VLNGfiysL~GLyd~~~~~~~~~ 115 (189)
T PF06662_consen 37 SVLARAYQLTGDEKYLDAAKKALNSFKVPVEEGGVLATFKNKYPWYEEYP-TTPPSYVLNGFIYSLIGLYDYYRLTGDEE 115 (189)
T ss_pred HHHHHHHHhHCCHHHHHHHHHHHHHhcChHhhCCeeEEecCCcEeEeecC-CCCCCEEeehHHHHHHHHHHHHHhcCCHH
Confidence 6889999999999999999985432111111111 000 000 111 1111 33 45555577888887
Q ss_pred hhc------------cceeccccCCCCCCCCcCCccccccCC-CCCccchhHHHHHHHHHHHhhcccccchHHHHHHH
Q 002940 371 HKE------------GHQLESSGTNIGHFNFKSDPKRLASNL-DSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYER 435 (863)
Q Consensus 371 yl~------------~h~y~tGG~s~~E~~~f~~p~~l~~~l-~~~~~EtCat~nmlkl~~~L~~~tgD~~YaD~~ER 435 (863)
..+ -..|-+|+.|.-...|+.. +..+ ++ +..+ ... -+.....|..+|+|+.+.+++||
T Consensus 116 A~~lf~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~-~~~~-~~a~~~Y--H~l---Hi~qL~~L~~it~d~~f~~~a~r 186 (189)
T PF06662_consen 116 AKELFDKGLKSLKKMLPLYDTGSWSRYDLRHFTL-GNAP-NIARWDY--HRL---HIQQLKWLYSITGDPIFKEYAER 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCchhhcccccc-ccCc-CcCcchH--HHH---HHHHHHHHHHhcCCHHHHHHHHH
Confidence 655 2346777666433112221 0111 01 0111 111 24456678999999999999997
No 31
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=92.07 E-value=2.1 Score=51.17 Aligned_cols=140 Identities=13% Similarity=0.118 Sum_probs=81.1
Q ss_pred ccchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCcccccCCchhhhhhhhcCCCcc-c------hhhHHHHHH
Q 002940 181 FVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWA-P------YYTIHKILA 253 (863)
Q Consensus 181 ~~GhyLsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~~~~~r~~~l~~~W~-p------yYt~HKI~a 253 (863)
+...||+++--+|..++|+.|.+|+..+.|.|..+-+. +.|. |++.--+..-......|+ . .-+++ ++
T Consensus 156 ttIR~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdT-ptgi--P~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~-LE- 230 (522)
T PTZ00470 156 TTIRVLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNE-DTGF--PASEINLATGRKSYPGWAGGCSILSEVGTLQ-LE- 230 (522)
T ss_pred eehhhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcC-CCCC--CcceeecccCCCCCcccCCCccchhhhhhHH-HH-
Confidence 46788999988999999999999999999999877652 4553 121100000000112221 1 11221 12
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhhccch---h---hhhhccccccccchH----HHHHHHHHhcC--CHHH
Q 002940 254 GLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYS---I---ERHWQTLNEEAGGMN----DVLYKLFCITQ--DPKH 321 (863)
Q Consensus 254 GLld~Y~~tGn~~AL~va~~~ad~~~~r~~~~~~~~~---~---~~~~~~l~~E~GGmn----e~L~~LY~~TG--d~ry 321 (863)
+..-.++||+++..+.+.+..+.+.+.-.. +.++. + ...|..-....|++. |-|.+.|-++| |++|
T Consensus 231 -F~~LS~lTGd~kY~~~a~~i~~~l~~~~~~-~~GL~p~~i~~~~g~~~~~~~siGa~~DS~YEYLlK~~il~~~~d~~~ 308 (522)
T PTZ00470 231 -FNYLSEITGDPKYAEYVDKVMDALFSMKPA-INGLYPIFLNPDAGRFCGNHISLGALGDSYYEYLLKQWLYTNGREERY 308 (522)
T ss_pred -HHHHHHhhCCHHHHHHHHHHHHHHHhcCCC-CCCccceEECCccCccCCCceeecCCcchhHHHHHHHHHhcCCCcHHH
Confidence 223468899999999999999999754221 11211 0 001111122345555 56668888995 7777
Q ss_pred HHHHhh
Q 002940 322 LMLAHL 327 (863)
Q Consensus 322 L~lA~~ 327 (863)
+++-+.
T Consensus 309 ~~~~~~ 314 (522)
T PTZ00470 309 RRLFVE 314 (522)
T ss_pred HHHHHH
Confidence 765443
No 32
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=91.76 E-value=1.3 Score=49.80 Aligned_cols=130 Identities=19% Similarity=0.090 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCcccccCCchhhhhhhh--cCCCccchhhHHHHHHHHHHHHHH
Q 002940 184 HYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEA--LIPVWAPYYTIHKILAGLLDQYTY 261 (863)
Q Consensus 184 hyLsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~~~~~r~~~--l~~~W~pyYt~HKI~aGLld~Y~~ 261 (863)
-.+.++..++..++|+++++.+...++.+.+.+. ++|.+ |.....+-.. ....++. .+ |...++.+|+.
T Consensus 169 GI~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~--~~g~w---~~~~~~~~~~~~~~wChG~--~G--i~~~l~~~~~~ 239 (343)
T cd04794 169 GILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQF--PSGNF---PSSLGNRKRDRLVQWCHGA--PG--IVYLLAKAYLV 239 (343)
T ss_pred HHHHHHHhhhhhcCCccHHHHHHHHHHHHHHhhc--cCCCC---CCccCCCCCCccccccCCC--ch--HHHHHHHHHHH
Confidence 3445566777778999999999999999988876 56653 2211000000 1122222 22 45556688999
Q ss_pred cCCHhHHHHHHHHHHHHHHHhhhhhccchhhhhhccccccccchHHHHHHHHHhcCCHHHHHHHhhccc
Q 002940 262 ADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDK 330 (863)
Q Consensus 262 tGn~~AL~va~~~ad~~~~r~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~ryL~lA~~f~~ 330 (863)
+++++.++.+.+.++.+.++ .... .... .-|... |.-+.|..+|+.|+|++|++.|..+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~--g~~~----~~~~-lCHG~~-G~~~~lL~~~~~~~~~~~~~~a~~~~~ 300 (343)
T cd04794 240 FKEEQYLEAAIKCGELIWKR--GLLK----KGPG-LCHGIA-GNAYAFLLLYRLTGDLKYLYRACKFAE 300 (343)
T ss_pred hCCHHHHHHHHHHHHHHHHh--CCcc----CCCc-cccCcc-chHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 99999999999888876432 1100 0000 112222 566899999999999999999998754
No 33
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=91.35 E-value=0.38 Score=56.38 Aligned_cols=255 Identities=8% Similarity=0.023 Sum_probs=125.5
Q ss_pred ccchHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHhcCCcccccCCchhhhhhhhcCCCccchh-hHHHH---HHH
Q 002940 181 FVGHYLSASALMWAST--HNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYY-TIHKI---LAG 254 (863)
Q Consensus 181 ~~GhyLsala~~ya~T--gD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~~~~~r~~~l~~~W~pyY-t~HKI---~aG 254 (863)
+...+|+++=-+|..+ +|+.|.+||.++.|.|..+-+. ++|. |++.--+. ......|.+.- +++-+ ..-
T Consensus 78 t~iR~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t-~~g~--P~~~~n~~--~~~~~~~~~~~~~la~~gs~~lE 152 (452)
T PF01532_consen 78 TTIRVLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDT-PTGI--PYPRVNLR--TGGKNRWPGGESSLAEAGSLQLE 152 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSS-SSS-----SEEETT--TCEEETTCCGEEEHHHHCSSHHH
T ss_pred hhhHhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccC-CCcc--ccceeeec--ccCCCCCCCCcccccccccceec
Confidence 4678899988889999 9999999999999998877753 5664 22211000 00001111110 11110 111
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHHHHHhhh-hhccch----h--hhhhccccccccchH----HHHHHHHHhcC--CHHH
Q 002940 255 LLDQYTYADNAEALRMTTWMVEYFYNRVQN-VIKKYS----I--ERHWQTLNEEAGGMN----DVLYKLFCITQ--DPKH 321 (863)
Q Consensus 255 Lld~Y~~tGn~~AL~va~~~ad~~~~r~~~-~~~~~~----~--~~~~~~l~~E~GGmn----e~L~~LY~~TG--d~ry 321 (863)
+..-.++||+++..+.+.+..+.+.+...+ .+.++. + ...|.......||+. |-|.+.|.++| |+.|
T Consensus 153 f~~LS~lTgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d~~~ 232 (452)
T PF01532_consen 153 FTRLSQLTGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTDEQY 232 (452)
T ss_dssp HHHHHHHHS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTTHHH
T ss_pred hhHHHHHhhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccchHH
Confidence 223468899999999999999999762111 011111 0 000111122345555 67789999999 8888
Q ss_pred HHHHhhccc---cc-ccchhhccCCC------------CCCCcccCCCCeeehh--hHHHHHhCCchhhc----------
Q 002940 322 LMLAHLFDK---PC-FLGLLALQADD------------ISGFHSNTHIPIVIGS--QMRYEVTGDQLHKE---------- 373 (863)
Q Consensus 322 L~lA~~f~~---~~-~~~~la~~~D~------------l~~~HanthiP~~~G~--A~~Y~~TGD~~yl~---------- 373 (863)
+++=+...+ +. ...|...+... ..-.+...|.-++.|. +.-.+.-+++.+++
T Consensus 233 ~~~~~~a~~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~~~~~~~~~A~~l~~~C~ 312 (452)
T PF01532_consen 233 RDMYDEAVDAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLFNDEGDLELAEELTETCY 312 (452)
T ss_dssp HHHHHHHHHHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhcccCchhHHHHHHHHHHHHH
Confidence 866444321 11 11111000000 0011222344444442 22233346667766
Q ss_pred --cceeccccCCCCCCCCcCCccc---c-----ccCCCCCccchhHHHHHHHHHHHhhcccccchHHHHHHHHHhhhccc
Q 002940 374 --GHQLESSGTNIGHFNFKSDPKR---L-----ASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLG 443 (863)
Q Consensus 374 --~h~y~tGG~s~~E~~~f~~p~~---l-----~~~l~~~~~EtCat~nmlkl~~~L~~~tgD~~YaD~~ERalyN~iLa 443 (863)
++.++||... |.-.|.+... . ...+........---+.+++.-+|+|+|||++|-|.-..++ +++-.
T Consensus 313 ~~y~~~~tGl~P--E~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~LRPE~iES~fylyR~TgD~~yre~gw~if-~ai~k 389 (452)
T PF01532_consen 313 WLYKSTPTGLGP--EIFSFDPCEENCQWDEERKDFMIKISDPRYLLRPETIESLFYLYRATGDPKYREWGWDIF-QAIEK 389 (452)
T ss_dssp HHHHTSSSSS----SEEEESCSCG--TEETGGCSCCHHGGG--B-S--HHHHHHHHHHHHH-BHHHHHHHHHHH-HHHHH
T ss_pred HHHHhcccCCCc--eEEEeeccccccccchhhcccccccccccccchhhhhhheeEEEEEcCCchHHHHHHHHH-HHHHH
Confidence 4445666543 3002222100 0 00000011122222377888899999999999999887654 55543
No 34
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=89.59 E-value=8.1 Score=44.31 Aligned_cols=144 Identities=14% Similarity=0.110 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhh----hccchhhhhhcccccccc-c------hH--HHHHHH
Q 002940 246 YTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNV----IKKYSIERHWQTLNEEAG-G------MN--DVLYKL 312 (863)
Q Consensus 246 Yt~HKI~aGLld~Y~~tGn~~AL~va~~~ad~~~~r~~~~----~~~~~~~~~~~~l~~E~G-G------mn--e~L~~L 312 (863)
-++|++++ +++.|+.+|.+..++.|.+.|+-++++|-.. +.+..+.+ |...+++.| | ++ ..|..+
T Consensus 175 p~MHl~EA-~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~d-W~p~~~frg~~~ePGH~fEW~~Lll~~ 252 (388)
T COG2942 175 PHMHLLEA-MLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHD-WNPAHGFRGRGIEPGHQFEWAWLLLDI 252 (388)
T ss_pred cchHHHHH-HHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhcccc-CCcCCCcccCCCCCchHHHHHHHHHHH
Confidence 36787776 6689999999999999999999999887532 11222333 334444443 2 23 466788
Q ss_pred HHhcCCHHHHHHHhhcccccccchhhccCCCCCCCcccCCCCeeehhhHHHHHhCCchhhccceeccccCCCCCCCCcCC
Q 002940 313 FCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKEGHQLESSGTNIGHFNFKSD 392 (863)
Q Consensus 313 Y~~TGd~ryL~lA~~f~~~~~~~~la~~~D~l~~~HanthiP~~~G~A~~Y~~TGD~~yl~~h~y~tGG~s~~E~~~f~~ 392 (863)
-+.-|+.+.+..|+++.+...-. +-|.- +.-+.++...+ +.
T Consensus 253 a~~~~~~~l~~~A~~lf~~a~~~----g~d~~------------------------------~gg~~~sl~~D----~~- 293 (388)
T COG2942 253 ARRRGRAWLIEAARRLFDIAVAD----GWDPE------------------------------RGGAYYSLDDD----GS- 293 (388)
T ss_pred HHHhchhHHHHHHHHHHHHHHHh----ccCcc------------------------------cCeEEEEecCC----CC-
Confidence 88889999999999887643311 11111 00011111100 00
Q ss_pred ccccccCCCCCccchhHHHHHHHHHHHhhcccc-cchHHHHHHHHH
Q 002940 393 PKRLASNLDSNTEESCTTYNMLKVSRHLFRWTK-EIAYADYYERSL 437 (863)
Q Consensus 393 p~~l~~~l~~~~~EtCat~nmlkl~~~L~~~tg-D~~YaD~~ERal 437 (863)
.-+...=.-...+.|+-+-.|-..+| +.+|-+.+.|+.
T Consensus 294 -------~~d~~~r~WpQ~E~l~AA~ala~~~~~~~~y~~~~~R~~ 332 (388)
T COG2942 294 -------PHDRQQRLWPQTEALKAAVALAETTGARERYWQWYARAW 332 (388)
T ss_pred -------cCCHHHhhChHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 00112222334556899999999999 999999999975
No 35
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=88.89 E-value=5 Score=45.70 Aligned_cols=142 Identities=12% Similarity=0.049 Sum_probs=88.0
Q ss_pred cccchHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHhcCCccccc--CCch-hhhhh-hh---cCCCccchhhHHHH
Q 002940 180 HFVGHYLSASALMWAST-HNESLKEKMSAVVSALSACQKEIGSGYLSA--FPTE-QFDRL-EA---LIPVWAPYYTIHKI 251 (863)
Q Consensus 180 h~~GhyLsala~~ya~T-gD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga--~p~~-~~~r~-~~---l~~~W~pyYt~HKI 251 (863)
|=.--.+.+++.+|..+ +++..++.+.+.++.+.+.+.....|-.-+ ++.. ....- .. ....|--=-.+ |
T Consensus 172 HG~aGi~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~G--i 249 (382)
T cd04793 172 HGIAGPLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPG--I 249 (382)
T ss_pred hcchHHHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHH--H
Confidence 55556778889999888 899999999999998888776433331111 1100 00000 00 11223222233 5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhhccchhhhhhcccccccc--chHHHHHHHHHhcCCHHHHHHHhhcc
Q 002940 252 LAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFD 329 (863)
Q Consensus 252 ~aGLld~Y~~tGn~~AL~va~~~ad~~~~r~~~~~~~~~~~~~~~~l~~E~G--Gmne~L~~LY~~TGd~ryL~lA~~f~ 329 (863)
...++.+++.+++++.++++.+..+-+.++.... . ......-| +| |+-+.|..+|+.|+|+++++.|+++.
T Consensus 250 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~---~~~~~~lC-hG~~G~~~~l~~~~~~~~~~~~~~~a~~~~ 322 (382)
T cd04793 250 ARALQLAGKALDDQKLQEAAEKILKAALKDKKQL---S---KLISPTLC-HGLAGLLFIFYLLYKDTNTNEFKSALEYLL 322 (382)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhChhhh---c---cCCCCCcC-ccHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 5666678899999999998888877665432110 0 00000111 33 67789999999999999999998765
Q ss_pred c
Q 002940 330 K 330 (863)
Q Consensus 330 ~ 330 (863)
+
T Consensus 323 ~ 323 (382)
T cd04793 323 N 323 (382)
T ss_pred H
Confidence 4
No 36
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=87.86 E-value=10 Score=43.72 Aligned_cols=84 Identities=23% Similarity=0.261 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhh--hhccc-----hhhhh---hc--cccccccchHHHHHHHH
Q 002940 246 YTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQN--VIKKY-----SIERH---WQ--TLNEEAGGMNDVLYKLF 313 (863)
Q Consensus 246 Yt~HKI~aGLld~Y~~tGn~~AL~va~~~ad~~~~r~~~--~~~~~-----~~~~~---~~--~l~~E~GGmne~L~~LY 313 (863)
.|+ .|+-||+.+|.++|++-.|+.|..++|-+..-|+. .|+-- ....+ |. .-..|.--+..-+-.|-
T Consensus 176 tTI-RvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~A~~p~~~~~SStaEvttiQlEfr~Ls 254 (546)
T KOG2431|consen 176 TTI-RVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGTAHPPRWTGDSSTAEVTTIQLEFRYLS 254 (546)
T ss_pred hhH-HHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCcccCCCCCCccchhhheeeeeeHHHHH
Confidence 344 47899999999999999999999999999877742 11100 00111 11 11112222334456799
Q ss_pred HhcCCHHHHHHHhhccc
Q 002940 314 CITQDPKHLMLAHLFDK 330 (863)
Q Consensus 314 ~~TGd~ryL~lA~~f~~ 330 (863)
.+|||++|-++|.+..+
T Consensus 255 ~ltgd~kY~~~a~kv~e 271 (546)
T KOG2431|consen 255 RLTGDPKYEELAEKVTE 271 (546)
T ss_pred hhcCCchHHHHHHHHHH
Confidence 99999999999998654
No 37
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=87.79 E-value=2.5 Score=49.09 Aligned_cols=161 Identities=16% Similarity=0.109 Sum_probs=77.6
Q ss_pred CCCCCCCCCcCccCcccchH-HHHHHH-HHHh-------cCcHHHHHHHHHHHHHHHHHHHhcCCcccccCC------ch
Q 002940 166 PYGGWEEPSCELRGHFVGHY-LSASAL-MWAS-------THNESLKEKMSAVVSALSACQKEIGSGYLSAFP------TE 230 (863)
Q Consensus 166 ~ygGWE~~~~~l~Gh~~Ghy-Lsala~-~ya~-------TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p------~~ 230 (863)
-.|||-..+-..+-.+++.+ +..|++ +|.. -+-+.+++.++.=+|+|.+||. ++|.|-..- ..
T Consensus 52 lsGGW~DAGD~~Ky~~~~a~s~~~L~~~~~e~~~~~e~~~~~~dllde~kwg~D~llkm~~--~~~~~~~qvgdg~~~h~ 129 (444)
T PF00759_consen 52 LSGGWYDAGDYGKYTFPMAYSVTMLAWSAYEFFPAYESGNGIPDLLDEAKWGLDWLLKMQD--SDGTFYAQVGDGGVDHK 129 (444)
T ss_dssp ---SB-SSSSS-EEHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHTBS--CTTEEEEEESTHHHHHT
T ss_pred ccCceeecCCcceecccHHHHHHHHHHHHHHhHHHhhcCCcHHHHHHHHHHHHHHHHhccC--CCCceeeeccCccchhh
Confidence 45888665433443333333 234422 2322 2347899999999999999999 444332110 01
Q ss_pred hhhhhhhc---CCC--c---cchhh-HHHHHHHHHHHHHHcCC------HhHHHHHHHHHHHHHHHhhhhhccchhhhhh
Q 002940 231 QFDRLEAL---IPV--W---APYYT-IHKILAGLLDQYTYADN------AEALRMTTWMVEYFYNRVQNVIKKYSIERHW 295 (863)
Q Consensus 231 ~~~r~~~l---~~~--W---~pyYt-~HKI~aGLld~Y~~tGn------~~AL~va~~~ad~~~~r~~~~~~~~~~~~~~ 295 (863)
.|.+.+.. +.. + .|--. .-.+-+.|-.+++.-.+ ++.|+.|+++-+|..+.-........ ...
T Consensus 130 ~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~~~~~~~~~~--~~~ 207 (444)
T PF00759_consen 130 VWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVFKDFDPAYAAQCLKAAKEAYAFAKKNPGVYSDNPQ--PNG 207 (444)
T ss_dssp EESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHSTTHGGGTST--CTT
T ss_pred cccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCcc--ccc
Confidence 12222111 110 0 01000 11122333344554443 57889999999998764332211110 000
Q ss_pred ccccccccc---hHHHHHHHHHhcCCHHHHHHHhhccc
Q 002940 296 QTLNEEAGG---MNDVLYKLFCITQDPKHLMLAHLFDK 330 (863)
Q Consensus 296 ~~l~~E~GG---mne~L~~LY~~TGd~ryL~lA~~f~~ 330 (863)
...-++.+- +..+-.|||+.|||++|++.|+.+..
T Consensus 208 ~~~Y~~~~~~De~~wAA~~Ly~aTg~~~Y~~~a~~~~~ 245 (444)
T PF00759_consen 208 GGFYNSSGYEDELAWAAAELYRATGDESYLDYAKEYYD 245 (444)
T ss_dssp TTTSHCS-SHHHHHHHHHHHHHHHT-HHHHHHHHHHCC
T ss_pred CCcccCCCcccHHHHHHHHHHHhcCcHHHHHHHHHhHH
Confidence 000001111 23466899999999999999998764
No 38
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=87.72 E-value=2.2 Score=47.42 Aligned_cols=117 Identities=20% Similarity=0.166 Sum_probs=72.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhcCCcccccCCchhhhhhhhcCCCcc-chhhHHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 002940 197 HNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWA-PYYTIHKILAGLLDQYTYADNAEALRMTTWMV 275 (863)
Q Consensus 197 gD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~~~~~r~~~l~~~W~-pyYt~HKI~aGLld~Y~~tGn~~AL~va~~~a 275 (863)
.++++.+-++.-||.+.+.|- ++|-.-+--....+|+. ++.|+ |=. ..-|..+|+.-+.++.|+.+...+
T Consensus 239 d~~~~~~dVK~sldym~~~rf--psGNyP~s~~~~~drLV--hWcHGApGv-----~~~L~kAy~VF~Eekyl~aa~eca 309 (403)
T KOG2787|consen 239 DQPALLKDVKGSLDYMIQNRF--PSGNYPSSEGNKRDRLV--HWCHGAPGV-----AYTLAKAYQVFKEEKYLEAAMECA 309 (403)
T ss_pred cchhHHHhhhhHHHHHHHccC--CCCCCCcccCCCcceee--eeccCCchH-----HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356778888888888876666 87753211111222221 12221 221 122457899999999999999999
Q ss_pred HHHHHHhhhhhccchhhhhhccccccccchHHHHHHHHHhcCCHHHHHHHhhccc
Q 002940 276 EYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDK 330 (863)
Q Consensus 276 d~~~~r~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~ryL~lA~~f~~ 330 (863)
|-+.++ .++.+- .+ +-|... |-.-++.-||+.|||.+||-=|++|.+
T Consensus 310 dvVW~r--GlLkkg----~G-ichGva-GNaYvFLsLyRLT~d~kYlyRA~kFae 356 (403)
T KOG2787|consen 310 DVVWKR--GLLKKG----VG-ICHGVA-GNAYVFLSLYRLTGDMKYLYRAKKFAE 356 (403)
T ss_pred HHHHHh--hhhhcC----Cc-cccccc-CchhhhHhHHHHcCcHHHHHHHHHHHH
Confidence 998765 121110 11 111111 333789999999999999999999864
No 39
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=86.51 E-value=6.9 Score=44.87 Aligned_cols=142 Identities=12% Similarity=0.038 Sum_probs=91.2
Q ss_pred cchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCcccccCCchhhhhhhhcCCCccchhhHHHHHHH--HHHHH
Q 002940 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAG--LLDQY 259 (863)
Q Consensus 182 ~GhyLsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~~~~~r~~~l~~~W~pyYt~HKI~aG--Lld~Y 259 (863)
.=|-++|+=..|+.|++....++++++++.+..-+-...+|-+.-++...++-....++-+ .-.+|.++-+ |++..
T Consensus 176 ~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~p~~~frg~~--~ePGH~fEW~~Lll~~a 253 (388)
T COG2942 176 HMHLLEAMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHDWNPAHGFRGRG--IEPGHQFEWAWLLLDIA 253 (388)
T ss_pred chHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCCcCCCcccCC--CCCchHHHHHHHHHHHH
Confidence 4688999999999999999999999999999988887788877655432221000000000 1135555443 23666
Q ss_pred HHcCCHhHHHHHHHHHHHHHHHh-----hhhh-----ccc---hhhhhhccccccccchHHHHHHHHHhcC-CHHHHHHH
Q 002940 260 TYADNAEALRMTTWMVEYFYNRV-----QNVI-----KKY---SIERHWQTLNEEAGGMNDVLYKLFCITQ-DPKHLMLA 325 (863)
Q Consensus 260 ~~tGn~~AL~va~~~ad~~~~r~-----~~~~-----~~~---~~~~~~~~l~~E~GGmne~L~~LY~~TG-d~ryL~lA 325 (863)
+..++.++...|+++.+=....- +..+ ++. ..++.|. .+|. -.+++-|+..|| +++|++..
T Consensus 254 ~~~~~~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d~~~r~Wp--Q~E~---l~AA~ala~~~~~~~~y~~~~ 328 (388)
T COG2942 254 RRRGRAWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHDRQQRLWP--QTEA---LKAAVALAETTGARERYWQWY 328 (388)
T ss_pred HHhchhHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCCHHHhhCh--HHHH---HHHHHHHHhcCCchHHHHHHH
Confidence 78899999999998887665421 0000 000 1122221 1342 367888999999 99999999
Q ss_pred hhccc
Q 002940 326 HLFDK 330 (863)
Q Consensus 326 ~~f~~ 330 (863)
.++.+
T Consensus 329 ~R~~~ 333 (388)
T COG2942 329 ARAWD 333 (388)
T ss_pred HHHHH
Confidence 88753
No 40
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=84.98 E-value=11 Score=42.84 Aligned_cols=170 Identities=13% Similarity=-0.082 Sum_probs=89.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhcCCcccccCCchhhhhhhh-------cCCCccchhhHHHHHHHHHHHHHHc-CCHhHH
Q 002940 197 HNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEA-------LIPVWAPYYTIHKILAGLLDQYTYA-DNAEAL 268 (863)
Q Consensus 197 gD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~~~~~r~~~-------l~~~W~pyYt~HKI~aGLld~Y~~t-Gn~~AL 268 (863)
.+.+....+..+++.|.+.+....++|...... +...+. ..-.|+-=.++ |+..|...|+.+ +++..+
T Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~G~aHG~aG--i~~~L~~~~~~~~~~~~~~ 195 (382)
T cd04793 120 PDSELLREILDYLVYLTEPLNQDITLYIWSENQ--PSETESKEFPEGHINLGLAHGIAG--PLALLALAKERGIRVDGQL 195 (382)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCCccCcCcC--CCccccccCCCccccccchhcchH--HHHHHHHHHHcCCCcCChH
Confidence 567777778888888777644323333322110 000000 01112211222 445555567777 788899
Q ss_pred HHHHHHHHHHHHHhhhhhc-cchhhh------------hh--cccccccc--chHHHHHHHHHhcCCHHHHHHHhhcccc
Q 002940 269 RMTTWMVEYFYNRVQNVIK-KYSIER------------HW--QTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDKP 331 (863)
Q Consensus 269 ~va~~~ad~~~~r~~~~~~-~~~~~~------------~~--~~l~~E~G--Gmne~L~~LY~~TGd~ryL~lA~~f~~~ 331 (863)
+++.+..+|+.+.+...-. .+...+ .. ....--+| |+..+++.+++.++|+++++.|....+.
T Consensus 196 ~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~ 275 (382)
T cd04793 196 EAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIARALQLAGKALDDQKLQEAAEKILKA 275 (382)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999998888754421100 000000 00 00111244 6778999999999999999999877543
Q ss_pred cccchhhccCCCCCCCcccCCCCe--eehhhHHHHHhCCchhhc
Q 002940 332 CFLGLLALQADDISGFHSNTHIPI--VIGSQMRYEVTGDQLHKE 373 (863)
Q Consensus 332 ~~~~~la~~~D~l~~~HanthiP~--~~G~A~~Y~~TGD~~yl~ 373 (863)
........ ... ..+...|... +......|+.|+|+++++
T Consensus 276 ~~~~~~~~--~~~-~~~~lChG~~G~~~~l~~~~~~~~~~~~~~ 316 (382)
T cd04793 276 ALKDKKQL--SKL-ISPTLCHGLAGLLFIFYLLYKDTNTNEFKS 316 (382)
T ss_pred HHhChhhh--ccC-CCCCcCccHHHHHHHHHHHHHHhCCcHHHH
Confidence 22111000 000 1122334432 333566799999999876
No 41
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=84.32 E-value=5.1 Score=47.34 Aligned_cols=143 Identities=22% Similarity=0.178 Sum_probs=86.2
Q ss_pred cchHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHhc-------CCcccccCCchhhhhhhh-cCCCccchh--hHHH
Q 002940 182 VGHYLSASALMWASTHNE-SLKEKMSAVVSALSACQKEI-------GSGYLSAFPTEQFDRLEA-LIPVWAPYY--TIHK 250 (863)
Q Consensus 182 ~GhyLsala~~ya~TgD~-~lk~k~~~~Vd~L~~~Q~~~-------~dGYlga~p~~~~~r~~~-l~~~W~pyY--t~HK 250 (863)
.|--+|+++.+++.++.+ ++.+.+...++-|.+.--.. +.-|.++-- +.+. .+..|+|-+ ..--
T Consensus 507 nGLviSgl~kag~~~~a~~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g-----~ve~~n~~~~~~~FldDYAF 581 (786)
T KOG2244|consen 507 NGLVISGLAKAGKILKAEPEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASG-----RVEHSNRPSKAPAFLDDYAF 581 (786)
T ss_pred cchhhHHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCc-----ceeccCCccccchhhhhHHH
Confidence 455689999999887754 88888887777665442211 334444332 2222 235666422 2223
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhh----hhccchhhhhh-cccc----ccccc--hH-HHHHHHHHhcCC
Q 002940 251 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQN----VIKKYSIERHW-QTLN----EEAGG--MN-DVLYKLFCITQD 318 (863)
Q Consensus 251 I~aGLld~Y~~tGn~~AL~va~~~ad~~~~r~~~----~~~~~~~~~~~-~~l~----~E~GG--mn-e~L~~LY~~TGd 318 (863)
++.||||.|+.+|+.+.|+-|+++-|=-.+-|-+ .+....++..- ++.. .|--| +. --|++||.+++.
T Consensus 582 lI~gLLDlYea~~~~e~LkwA~~LQdtqdklFWdgggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~~ 661 (786)
T KOG2244|consen 582 LISGLLDLYEAGGGIEWLKWAIKLQDTQDKLFWDGGGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVAA 661 (786)
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHHHHheecCCceeeeeccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhhH
Confidence 7899999999999999999999888765543321 00000000000 0000 01111 11 468999999999
Q ss_pred HHHHHHHhhcc
Q 002940 319 PKHLMLAHLFD 329 (863)
Q Consensus 319 ~ryL~lA~~f~ 329 (863)
+.||+.|.++.
T Consensus 662 e~yl~ka~~ll 672 (786)
T KOG2244|consen 662 ESYLNKAHRLL 672 (786)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 42
>PLN02266 endoglucanase
Probab=83.62 E-value=12 Score=44.60 Aligned_cols=158 Identities=9% Similarity=0.020 Sum_probs=80.2
Q ss_pred CCCCCCCCCcCccCcccchHHH-HHHHHHHhc------CcHHHHHHHHHHHHHHHHHHHhcCCccccc-CCc-----hhh
Q 002940 166 PYGGWEEPSCELRGHFVGHYLS-ASALMWAST------HNESLKEKMSAVVSALSACQKEIGSGYLSA-FPT-----EQF 232 (863)
Q Consensus 166 ~ygGWE~~~~~l~Gh~~GhyLs-ala~~ya~T------gD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga-~p~-----~~~ 232 (863)
--|||-..+-..+=.+++.|-. .|++.|... +-+.+++.++.-+|+|++||. .+|-+-. .-+ ..|
T Consensus 90 lsGGwyDAGD~~Kf~~p~a~s~t~L~w~~~ef~~~~~~~~pd~Ldelkw~~D~llk~~~--~~~~vy~qVg~~~~Dh~~W 167 (510)
T PLN02266 90 LVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGLMKSELQNAKDAIRWATDYLLKATA--HPDTIYVQVGDANKDHACW 167 (510)
T ss_pred CCCcceeCCCCceecchHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccC
Confidence 3578976654455455666532 344444433 357889999999999999997 3332211 000 011
Q ss_pred hhhhhcCCCccchhh----------HHHHHHHHHHHHHHcCC------HhHHHHHHHHHHHHHHHhhhhhccchhhhhhc
Q 002940 233 DRLEALIPVWAPYYT----------IHKILAGLLDQYTYADN------AEALRMTTWMVEYFYNRVQNVIKKYSIERHWQ 296 (863)
Q Consensus 233 ~r~~~l~~~W~pyYt----------~HKI~aGLld~Y~~tGn------~~AL~va~~~ad~~~~r~~~~~~~~~~~~~~~ 296 (863)
.+-|+.... -|.|. .-.+-++|-++++.-.+ ++.|+.|+++-+|..+.-+.. .. .+.....
T Consensus 168 ~~Pe~~~~~-R~~y~i~~~~pgsd~a~e~AAALAaas~vfk~~D~~yA~~~L~~Ak~ly~fa~~~~g~y-~~-~~~~~~~ 244 (510)
T PLN02266 168 ERPEDMDTP-RSVFKVDKNTPGSDVAAETAAALAAASLVFRKSDPTYSKLLVRRAIRVFQFADKYRGAY-SN-GLKPDVC 244 (510)
T ss_pred CChhhcCCC-CeeEEeCCCCCchHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCCCc-cC-CCCcccC
Confidence 111111000 01111 11123444345554332 467888999888886531111 00 0000000
Q ss_pred cccccccch----HHHHHHHHHhcCCHHHHHHHhhc
Q 002940 297 TLNEEAGGM----NDVLYKLFCITQDPKHLMLAHLF 328 (863)
Q Consensus 297 ~l~~E~GGm----ne~L~~LY~~TGd~ryL~lA~~f 328 (863)
..-...+|. -.+-+|||..|||++|++.++..
T Consensus 245 ~~y~s~s~~~DEl~WAAawLy~ATGd~~Yl~~~~~~ 280 (510)
T PLN02266 245 PFYCSYSGYQDELLWGAAWLHKATKNPTYLNYIQVN 280 (510)
T ss_pred CCcccCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 011122233 34557999999999999987654
No 43
>PLN02909 Endoglucanase
Probab=83.48 E-value=15 Score=43.63 Aligned_cols=152 Identities=10% Similarity=0.022 Sum_probs=79.3
Q ss_pred CCCCCCCCCcCccCcccchHH-HHHHHHHHh--------cCcHHHHHHHHHHHHHHHHHHHhcCCcccccC-Cc-----h
Q 002940 166 PYGGWEEPSCELRGHFVGHYL-SASALMWAS--------THNESLKEKMSAVVSALSACQKEIGSGYLSAF-PT-----E 230 (863)
Q Consensus 166 ~ygGWE~~~~~l~Gh~~GhyL-sala~~ya~--------TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~-p~-----~ 230 (863)
-.|||-..+-..+=.++..|- ..|++.|.. -+-+.+++.++.-+|+|++||. .+|-+-.- -. .
T Consensus 78 lsGGwyDAGD~~Kf~~p~a~s~~~L~w~~~~y~~~~~~~g~~~d~ldeikw~~D~llk~~~--~~~~~y~qVg~~~~Dh~ 155 (486)
T PLN02909 78 LVGGYYDAGDNVKYGLPMAFTVTTLAWSTLAYEKELRATGELENVRAAIRWGTDYFLKAAS--RKNRLYVQVGDPNLDHQ 155 (486)
T ss_pred CCCCceeCCCCceeCCchHHHHHHHHHHHHHhHHHHhhcCChHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcc
Confidence 457897665444444555553 234444422 2347889999999999999998 44432110 00 0
Q ss_pred hhhhhhhcCCCccchhh----------HHHHHHHHHHHHHHcCC------HhHHHHHHHHHHHHHHHhhhhhccchhhhh
Q 002940 231 QFDRLEALIPVWAPYYT----------IHKILAGLLDQYTYADN------AEALRMTTWMVEYFYNRVQNVIKKYSIERH 294 (863)
Q Consensus 231 ~~~r~~~l~~~W~pyYt----------~HKI~aGLld~Y~~tGn------~~AL~va~~~ad~~~~r~~~~~~~~~~~~~ 294 (863)
.|.+-|+.+.. -|.|. .-.+-+.|-.+++.-.+ ++.|+.|+++-+|..+.-+. ....
T Consensus 156 ~W~~Pe~~~~~-R~~~~i~~~~pgtd~a~~~AAAlA~as~vfk~~D~~yA~~lL~~Ak~~y~fA~~~~g~----y~~~-- 228 (486)
T PLN02909 156 CWVRPENMKTP-RTVLEIDEKTPGTEIAAETAAAMAASSMVFRHVDHKYSRRLLNKAKLLFKFAKAHKGT----YDGE-- 228 (486)
T ss_pred cCCChhhccCC-ceeEecCCCCCCcHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCC----cCCC--
Confidence 11111111100 01111 12233444445554433 46788888888888653111 1100
Q ss_pred hccccccccc----hHHHHHHHHHhcCCHHHHHHHhh
Q 002940 295 WQTLNEEAGG----MNDVLYKLFCITQDPKHLMLAHL 327 (863)
Q Consensus 295 ~~~l~~E~GG----mne~L~~LY~~TGd~ryL~lA~~ 327 (863)
...-+..+| +..+-+|||+.|||++||+.++.
T Consensus 229 -~~~y~s~s~y~DEl~WAAawLy~aTgd~~Yl~~~~~ 264 (486)
T PLN02909 229 -CPFYCSYSGYNDELLWAATWLYKATKKQMYLKYIKH 264 (486)
T ss_pred -CCccccCCCcchHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 001111122 33566799999999999997764
No 44
>PLN02345 endoglucanase
Probab=83.29 E-value=10 Score=44.84 Aligned_cols=155 Identities=10% Similarity=0.057 Sum_probs=78.8
Q ss_pred CCCCCCCCCcCccCcccchHH-HHHHHHHHhc--------CcHHHHHHHHHHHHHHHHHHHhcCCccccc-CCc-----h
Q 002940 166 PYGGWEEPSCELRGHFVGHYL-SASALMWAST--------HNESLKEKMSAVVSALSACQKEIGSGYLSA-FPT-----E 230 (863)
Q Consensus 166 ~ygGWE~~~~~l~Gh~~GhyL-sala~~ya~T--------gD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga-~p~-----~ 230 (863)
--|||-..+-..+=.++..|- +.|++.+..- +-+.+++.++.-.|+|++||. .+|-+-. .-. .
T Consensus 40 lsGGwyDAGD~~Kf~~p~a~t~t~L~w~~~e~~~~~~~~~~~~~~ldelkw~~Dyllk~~~--~~~~~y~qVg~~~~Dh~ 117 (469)
T PLN02345 40 LSKGMYDAGDHMKFGFPMAFTATVLSWSILEYGDQMNAANQLDSAKDSLKWITDYLINAHP--SENVLYIQVGDPKLDHK 117 (469)
T ss_pred CCCCceeCCCCceeCchhHHHHHHHHHHHHHhhhhhhcccchHHHHHHHhHHHHHHHHhcC--CCCeEEEEecCCCCCcc
Confidence 457897665445545555653 2233333332 236788899999999999998 4443211 000 0
Q ss_pred hhhhhhhcCCCccchhh----------HHHHHHHHHHHHHHcCC------HhHHHHHHHHHHHHHHHhhhhhccchhhh-
Q 002940 231 QFDRLEALIPVWAPYYT----------IHKILAGLLDQYTYADN------AEALRMTTWMVEYFYNRVQNVIKKYSIER- 293 (863)
Q Consensus 231 ~~~r~~~l~~~W~pyYt----------~HKI~aGLld~Y~~tGn------~~AL~va~~~ad~~~~r~~~~~~~~~~~~- 293 (863)
.|.+-|+... --|.|. .-.+-+.|-.+++.-.+ .+.|+.|+++-+|..+.-+......+...
T Consensus 118 ~W~~Pe~~~~-~R~~~~~~~~~pgsd~a~~~AAAlA~as~vfk~~D~~YA~~lL~~Ak~ly~fa~~~~g~y~~~~~~~~~ 196 (469)
T PLN02345 118 CWERPETMDE-KRPLTKINTSSPGSEVAAETAAAMAAASLVFKSSDSTYSDTLLKHAKQLFNFADKYRGSYSESIPEVQD 196 (469)
T ss_pred cCCChhhcCC-cceEEecCCCCCCcHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCccCC
Confidence 1111111110 011111 11233444344554443 46788888888888753211100001000
Q ss_pred hhcc--ccccccchHHHHHHHHHhcCCHHHHHHHh
Q 002940 294 HWQT--LNEEAGGMNDVLYKLFCITQDPKHLMLAH 326 (863)
Q Consensus 294 ~~~~--l~~E~GGmne~L~~LY~~TGd~ryL~lA~ 326 (863)
.... ...| +..+-+|||..|||++||+.++
T Consensus 197 ~Y~s~~~~DE---l~WAAawLy~ATgd~~Yl~~~~ 228 (469)
T PLN02345 197 YYNSTGYGDE---LLWAASWLYHATGDKTYLAYVT 228 (469)
T ss_pred CCCCcccccH---HHHHHHHHHHHhCCHHHHHHHH
Confidence 0000 0112 3356689999999999999884
No 45
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=82.97 E-value=5.3 Score=47.32 Aligned_cols=75 Identities=15% Similarity=0.172 Sum_probs=44.6
Q ss_pred ccchhHHHHHhcCCCCCCC-CCCCCCCCCc---Ccc--CcccchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcC
Q 002940 147 VDKLVWNFRKTARLPAPGE-PYGGWEEPSC---ELR--GHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIG 220 (863)
Q Consensus 147 ~drlL~~FR~~agL~~~g~-~ygGWE~~~~---~l~--Gh~~GhyLsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~~ 220 (863)
.+|||.-|+...|+|=.-- -.-||.-... -.. |-+.-- +++++ ..|||+.+++-+.+.++.|-+..- +
T Consensus 161 A~RLLPAF~T~TGiPy~~vNLk~GV~~~Et~~tctAg~gslllE-Fg~LS---rLTGD~~fE~vA~~A~~~lW~~RS--~ 234 (622)
T KOG2429|consen 161 ARRLLPAFETPTGIPYGRVNLKYGVDKGETTETCTAGAGSLLLE-FGTLS---RLTGDPKFEKVARRALDALWSLRS--G 234 (622)
T ss_pred HHhhcccccCCCCCCcceeehhcCCCCCCCcceecccccceeee-hhhhH---HhhCCcHHHHHHHHHHHHHHhhcC--C
Confidence 3688888888888753211 1123421110 011 122222 13444 489999999999999999987776 6
Q ss_pred CcccccC
Q 002940 221 SGYLSAF 227 (863)
Q Consensus 221 dGYlga~ 227 (863)
-|-+|..
T Consensus 235 igLlGn~ 241 (622)
T KOG2429|consen 235 IGLLGNH 241 (622)
T ss_pred CCcccce
Confidence 6666543
No 46
>PLN00119 endoglucanase
Probab=81.83 E-value=13 Score=44.23 Aligned_cols=158 Identities=10% Similarity=-0.013 Sum_probs=79.2
Q ss_pred CCCCCCCCCcCccCcccchHHH-HHHHHHHh--------cCcHHHHHHHHHHHHHHHHHHHhcCCccccc-C-----Cch
Q 002940 166 PYGGWEEPSCELRGHFVGHYLS-ASALMWAS--------THNESLKEKMSAVVSALSACQKEIGSGYLSA-F-----PTE 230 (863)
Q Consensus 166 ~ygGWE~~~~~l~Gh~~GhyLs-ala~~ya~--------TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga-~-----p~~ 230 (863)
..|||-..+-..+=.+++.|-. .|++.|.. -+-+.+++.++.-.|+|++||. .++.|-. . .-.
T Consensus 75 lsGGwyDAGD~~Kf~~p~a~s~t~L~w~~~ef~~~~~~~~~~~~~lde~kw~~Dyllk~~~--~~~~~y~qVgdg~~DH~ 152 (489)
T PLN00119 75 LTGGYYDAGDNMKFGFPLAFTTTMLAWSNIEMGSQLKAHHELGNALAALKWATDYLIKAHP--QPNVLYGQVGDGNSDHA 152 (489)
T ss_pred CCCCceeCCCCceeCcchHHHHHHHHHHHHHhHHHHhcCCccHHHHHHHHHHHHHHHHhcC--CCCeEEEEeccCCCccc
Confidence 4588976654455555666643 23433322 2235688888999999999997 3332211 0 000
Q ss_pred hhhhhhhc---CCCc-----cc-hhhHHHHHHHHHHHHHHcCC------HhHHHHHHHHHHHHHHHhhhhhccchhhhhh
Q 002940 231 QFDRLEAL---IPVW-----AP-YYTIHKILAGLLDQYTYADN------AEALRMTTWMVEYFYNRVQNVIKKYSIERHW 295 (863)
Q Consensus 231 ~~~r~~~l---~~~W-----~p-yYt~HKI~aGLld~Y~~tGn------~~AL~va~~~ad~~~~r~~~~~~~~~~~~~~ 295 (863)
.|.+-|+. +... -| --..-.+-+.|-.+++.-.+ ++.|+.|+++-+|..+.-+..-...+.....
T Consensus 153 ~W~~Pe~~~~~R~~y~i~~~~pgSd~a~~~AAAlA~as~vfk~~D~~yA~~lL~~Ak~~y~fA~~~~g~y~~~~~~~~g~ 232 (489)
T PLN00119 153 CWMRPEDMTTPRTSYRIDAQHPGSDLAGETAAAMAAASIAFAPSDPAYASILIGHAKDLFEFAKAHPGLYQNSIPNAGGF 232 (489)
T ss_pred ccCChhhCCCcCceeecCCCCCchHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCC
Confidence 11111111 1100 00 00112233444345554443 4678888888888875311110000000000
Q ss_pred c-c--ccccccchHHHHHHHHHhcCCHHHHHHHhhc
Q 002940 296 Q-T--LNEEAGGMNDVLYKLFCITQDPKHLMLAHLF 328 (863)
Q Consensus 296 ~-~--l~~E~GGmne~L~~LY~~TGd~ryL~lA~~f 328 (863)
. . ...| +..+-+|||+.|||+.|++.++..
T Consensus 233 Y~ss~~~DE---l~WAAawLY~aTgd~~Yl~~~~~~ 265 (489)
T PLN00119 233 YASSGYEDE---LLWAAAWLHRATNDQTYLDYLTQA 265 (489)
T ss_pred CCCCchhhH---HHHHHHHHHHHhCCHHHHHHHHhc
Confidence 0 0 0112 335667999999999999987654
No 47
>PLN02613 endoglucanase
Probab=81.72 E-value=11 Score=44.78 Aligned_cols=153 Identities=11% Similarity=0.062 Sum_probs=78.8
Q ss_pred CCCCCCCCCcCccCcccchHHH-HHHHHHHh--------cCcHHHHHHHHHHHHHHHHHHHh-------cCCcccccCCc
Q 002940 166 PYGGWEEPSCELRGHFVGHYLS-ASALMWAS--------THNESLKEKMSAVVSALSACQKE-------IGSGYLSAFPT 229 (863)
Q Consensus 166 ~ygGWE~~~~~l~Gh~~GhyLs-ala~~ya~--------TgD~~lk~k~~~~Vd~L~~~Q~~-------~~dGYlga~p~ 229 (863)
--|||-..+-..+=.+++.|.. .|++.|.. .+.+.+++.++.-.|+|.+||.. .+||-.- -
T Consensus 70 lsGGwyDAGD~~Ky~~p~a~s~t~L~w~~~e~~~~~~s~~~~~d~ldeikw~lD~llkm~~~~~~~~~QVGdg~~d---H 146 (498)
T PLN02613 70 LTGGYYDAGDNVKFGWPMAFTVTLLSWAAIEYQNEISSVNQLGYLRSAIRWGTDFILRAHTSPTTLYTQVGDGNAD---H 146 (498)
T ss_pred CCCCceeCCCCceecCchHHHHHHHHHHHHHhHHHHhhcCCchHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCcc---c
Confidence 4578976554444445666543 33444332 23578899999999999999863 1333210 0
Q ss_pred hhhhhhhhc---CCCcc-----chhh-HHHHHHHHHHHHHHcCC------HhHHHHHHHHHHHHHHHhhhhhccchhhhh
Q 002940 230 EQFDRLEAL---IPVWA-----PYYT-IHKILAGLLDQYTYADN------AEALRMTTWMVEYFYNRVQNVIKKYSIERH 294 (863)
Q Consensus 230 ~~~~r~~~l---~~~W~-----pyYt-~HKI~aGLld~Y~~tGn------~~AL~va~~~ad~~~~r~~~~~~~~~~~~~ 294 (863)
..|.+-|+. +.... |--. .-.+-++|-.+++.-.+ ++.|+.|+++-+|..+.-+.. ...
T Consensus 147 ~~W~~Pe~~~~~R~~~~~t~~~pgTd~a~~~AAALAaas~vfk~~D~~yA~~~L~~Ak~ly~~a~~~~g~y----~~~-- 220 (498)
T PLN02613 147 QCWERPEDMDTPRTLYKITSSSPGSEAAGEAAAALAAASLVFKDVDSSYSSKLLNHARSLFEFADKYRGSY----QAS-- 220 (498)
T ss_pred cccCCccccCCCCeeEecCCCCCccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhCCCCc----CCC--
Confidence 011111111 11111 1000 11133344345554333 467888888888886531111 000
Q ss_pred hccccccccc----hHHHHHHHHHhcCCHHHHHHHhhc
Q 002940 295 WQTLNEEAGG----MNDVLYKLFCITQDPKHLMLAHLF 328 (863)
Q Consensus 295 ~~~l~~E~GG----mne~L~~LY~~TGd~ryL~lA~~f 328 (863)
...-+..+| +..+-+|||..|||++|++.++..
T Consensus 221 -~~~y~s~s~~~DEl~WAAawLy~aTGd~~Yl~~~~~~ 257 (498)
T PLN02613 221 -CPFYCSYSGYQDELLWAAAWLYKATGEKKYLNYVISN 257 (498)
T ss_pred -CCcccccCccchHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 000011122 335667999999999999987654
No 48
>PLN02340 endoglucanase
Probab=81.63 E-value=18 Score=44.35 Aligned_cols=171 Identities=9% Similarity=-0.013 Sum_probs=86.3
Q ss_pred HHHHhcCCCCC----CCCCCCCCCCCcCccCcccchHH-HHHHHHHHhc--------CcHHHHHHHHHHHHHHHHHHHhc
Q 002940 153 NFRKTARLPAP----GEPYGGWEEPSCELRGHFVGHYL-SASALMWAST--------HNESLKEKMSAVVSALSACQKEI 219 (863)
Q Consensus 153 ~FR~~agL~~~----g~~ygGWE~~~~~l~Gh~~GhyL-sala~~ya~T--------gD~~lk~k~~~~Vd~L~~~Q~~~ 219 (863)
.+|..+++... .+-.|||-+.+-..+=.++..|- ..|++.|..- +-+.+++.++.-.|+|.+||..
T Consensus 57 ~WR~ds~l~Dg~~~~~DlsGGwyDAGD~vKf~~p~a~t~t~L~w~~~ef~~~~~~~~~~~~~ldeirw~~Dyllk~~~~- 135 (614)
T PLN02340 57 KWRGDSGLKDGFLQGVDLVGGYYDAGDHVKFGLPMAFAVTMLSWGAVDFRKEITALNQMQRTLWAIRWGTDYFIKAHTQ- 135 (614)
T ss_pred cccccccCCCcccccCCCCCCceeCCCcceecchhHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhcCC-
Confidence 45555555321 13458997665444445555553 3455555432 2367889999999999999873
Q ss_pred CCcccccC------CchhhhhhhhcC---CCcc-----ch-hhHHHHHHHHHHHHHHcCC------HhHHHHHHHHHHHH
Q 002940 220 GSGYLSAF------PTEQFDRLEALI---PVWA-----PY-YTIHKILAGLLDQYTYADN------AEALRMTTWMVEYF 278 (863)
Q Consensus 220 ~dGYlga~------p~~~~~r~~~l~---~~W~-----py-Yt~HKI~aGLld~Y~~tGn------~~AL~va~~~ad~~ 278 (863)
++-|-.- .-..|.+-|+.+ .... |- -..-.+-++|-++++.-.+ ++.|+.|+++-+|.
T Consensus 136 -~~~~~~qVGdg~~DH~~W~~PE~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaas~vfk~~D~~YA~~lL~~Ak~ly~fA 214 (614)
T PLN02340 136 -PNVLWGQVGDGDSDHYCWERAEDMTTPRTAYKLDQNHPGSDLAGETAAALAAASKAFKPYNSSYSDLLLVHAKQLFSFA 214 (614)
T ss_pred -CCeEEEEeCCCCcccccCCChhhcCCcCceeecCCCCCccHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 2222100 001122212111 1100 10 0011233444445554332 46788888888888
Q ss_pred HHHhhhhhccchh-hhhhcc--ccccccchHHHHHHHHHhcCCHHHHHHHhhc
Q 002940 279 YNRVQNVIKKYSI-ERHWQT--LNEEAGGMNDVLYKLFCITQDPKHLMLAHLF 328 (863)
Q Consensus 279 ~~r~~~~~~~~~~-~~~~~~--l~~E~GGmne~L~~LY~~TGd~ryL~lA~~f 328 (863)
.+.-+..-...+. +..... ...| +..+-+|||+.|||++||+.+...
T Consensus 215 ~~~~g~y~~s~~~a~~~Y~ss~~~DE---l~WAAawLy~ATgd~~Yl~~~~~~ 264 (614)
T PLN02340 215 DKFRGLYDDSIQNAKKFYTSSGYSDE---LLWAAAWLYRATGDEYYLKYVVDN 264 (614)
T ss_pred HhCCCCccCCCCccccCCCCCCcchH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 7532211000000 000000 0112 335567999999999999988764
No 49
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=80.69 E-value=5.6 Score=44.04 Aligned_cols=135 Identities=16% Similarity=0.179 Sum_probs=78.5
Q ss_pred cchHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHHHhcCCcccccCCchhhhhhhhcCCCccchhhHHHHHHHHHHHHH
Q 002940 182 VGHYLSASALMW-ASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYT 260 (863)
Q Consensus 182 ~GhyLsala~~y-a~TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~~~~~r~~~l~~~W~pyYt~HKI~aGLld~Y~ 260 (863)
.--.+-+++.+| ..++++++++.+..+++.+.+.+.....+|..-.......+ ...|--=-.+ |...++..+.
T Consensus 169 ~~Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~WC~G~~G--i~~~~~~~~~ 242 (355)
T PF05147_consen 169 IAGILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKS----RPSWCYGSPG--ILLALLKAYK 242 (355)
T ss_dssp HHHHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC------SSSSSHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCcccccc----ccccccCcHH--HHHHHHHHHH
Confidence 333455677777 58999999999999999999988654566543332111000 2333221233 4455667788
Q ss_pred HcCCHhHHHHHHHHHHHHHHHhhhhhccchhhhhhccccccccchHHHHHHHHHhcCCHHHHHHHhhccc
Q 002940 261 YADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDK 330 (863)
Q Consensus 261 ~tGn~~AL~va~~~ad~~~~r~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~ryL~lA~~f~~ 330 (863)
..+++...+.+..+.+.+.++-. . . .. ...-|.. -|+-+.|..+|+.|++++|.+.|+++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~-~----~-~~-~~lCHG~-aG~~~~l~~~~~~~~~~~~~~~~~~~~~ 304 (355)
T PF05147_consen 243 ILDDEEYDEEAEQALESILQKGL-F----L-NN-PSLCHGT-AGILEILLDLYKYTGDEEYKELANKLIQ 304 (355)
T ss_dssp HCT-HHHHHHHHHHHHHHHHH-T-C----T-TS-S-STTSH-HHHHHHHHHHHHHH--HCCHHHHHHHHH
T ss_pred hhchHHHHHHHHHHHHHHHHccc-c----C-CC-CceeCch-HHhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 89999988888888877754210 0 0 00 0011121 1577899999999999999999988753
No 50
>PLN03009 cellulase
Probab=80.22 E-value=43 Score=40.09 Aligned_cols=173 Identities=12% Similarity=0.017 Sum_probs=87.5
Q ss_pred HHHHhcCCCCCC----CCCCCCCCCCcCccCcccchHHH-HHHHHHHh-------cCcHHHHHHHHHHHHHHHHHHHhcC
Q 002940 153 NFRKTARLPAPG----EPYGGWEEPSCELRGHFVGHYLS-ASALMWAS-------THNESLKEKMSAVVSALSACQKEIG 220 (863)
Q Consensus 153 ~FR~~agL~~~g----~~ygGWE~~~~~l~Gh~~GhyLs-ala~~ya~-------TgD~~lk~k~~~~Vd~L~~~Q~~~~ 220 (863)
.+|..+++.... .--|||-..+-..+=.+++.|-. .|++.|.. .+-+.+++.++.-+|+|.+||..
T Consensus 55 ~Wr~ds~~~Dg~~~~~DlsGGwyDAGD~~Ky~~p~a~s~~~L~w~~~~f~d~~~~~~~~diLdeikw~~D~llkm~~~-- 132 (495)
T PLN03009 55 TWRANSGLSDGWTHNTDLTGGYYDAGDNVKFGFPMAFTTTMLAWSVIEFGDLMPSSELRNSLVAIRWATDYLLKTVSQ-- 132 (495)
T ss_pred CCcccCcCCCCCcccccCCCcceeCCCCceeccchHHHHHHHHHHHHHhHhhCCccccHHHHHHHHHHHHHHHHcccC--
Confidence 688888875321 34688976654444455555533 34444433 34467888889999999999873
Q ss_pred Cccccc-CCc-----hhhhhhhhc---CCCcc-----ch-hhHHHHHHHHHHHHHHcCC------HhHHHHHHHHHHHHH
Q 002940 221 SGYLSA-FPT-----EQFDRLEAL---IPVWA-----PY-YTIHKILAGLLDQYTYADN------AEALRMTTWMVEYFY 279 (863)
Q Consensus 221 dGYlga-~p~-----~~~~r~~~l---~~~W~-----py-Yt~HKI~aGLld~Y~~tGn------~~AL~va~~~ad~~~ 279 (863)
+|-+-. .-. ..|.+-|+. +.... |- -..-.+-+.|-.+++.-.+ ++.|+.|+++-+|..
T Consensus 133 ~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~is~~~p~sd~a~~~AAalA~as~vfk~~D~~YA~~ll~~Ak~ly~~a~ 212 (495)
T PLN03009 133 PNRIFVQVGDPIADHNCWERPEDMDTPRTVYAVNAPNPASDVAGETAAALAASSMAFRSSDPGYSETLLRNAIKTFQFAD 212 (495)
T ss_pred cCeEEEEeCCCCCCcccCcChhhcCCCCeEEEecCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 332210 000 001111111 11110 00 0012344444455555443 467888888888887
Q ss_pred HHhhhhhccchhhhhhccccccccc----hHHHHHHHHHhcCCHHHHHHHhh
Q 002940 280 NRVQNVIKKYSIERHWQTLNEEAGG----MNDVLYKLFCITQDPKHLMLAHL 327 (863)
Q Consensus 280 ~r~~~~~~~~~~~~~~~~l~~E~GG----mne~L~~LY~~TGd~ryL~lA~~ 327 (863)
+.-+.+-....+..-....-+..-| +..+-+|||+.|||++||+-++.
T Consensus 213 ~~~g~y~~~~~~~~g~~~~Y~~~s~~~DE~~WAAawLy~aTgd~~Yl~~~~~ 264 (495)
T PLN03009 213 MYRGAYSDNDDIKDGVCPFYCDFDGYQDELLWGAAWLRRASGDDSYLNYIEN 264 (495)
T ss_pred HcCCCccCCccccCccccCcCCcccccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 5322110000000000000011011 33566799999999999998764
No 51
>PF15095 IL33: Interleukin 33; PDB: 2KLL_A.
Probab=76.30 E-value=27 Score=37.15 Aligned_cols=115 Identities=19% Similarity=0.268 Sum_probs=59.3
Q ss_pred CCCcceeeeeecCCeeEEEeecCCceeeeecCCCCCccccceEEEEEecCCCCCccccccCCCCCcc--ccCCCCCCCce
Q 002940 662 YNSQLITFTQEYGNTKFVLTNSNQSITMEKFPKSGTDAALHATFRLILNDSSGSEFSSLNDFIGKSV--MLEPFDSPGML 739 (863)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gt~~~~~~~fr~~~~~~~~~~~~~p~~~~g~~v--~l~p~~~p~~~ 739 (863)
||+|-++|.-++|.-.+. ++-. ..-+.---..||.......+ + .+..+.+|+.+ .+.|-..++-.
T Consensus 130 YNDQsitFvledgsY~I~---------VeDl--~k~qEKDKVLlryYeSq~pS-~-esgdgvDGk~LMVnlSPtkdkDf~ 196 (268)
T PF15095_consen 130 YNDQSITFVLEDGSYEIY---------VEDL--GKDQEKDKVLLRYYESQCPS-S-ESGDGVDGKKLMVNLSPTKDKDFL 196 (268)
T ss_dssp TTTEEEEEEE-SS-EEEE---------EEE----S------EEEEEEE----T-T-TS----S---EEEEEESS--SSEE
T ss_pred ccCceEEEEEeCCcEEEE---------ehhc--ccccccceEEEEeccCCCCc-c-cCCCCccceEEEEEcCCccchheE
Confidence 666666665555532222 2222 12233345678866543222 1 22333566665 78999999988
Q ss_pred EEeecCCceEEEecCCCCCCCceEEEeeccCCCCCeEEEeecCCcceEEEEe
Q 002940 740 VIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTA 791 (863)
Q Consensus 740 v~~~~~~~~l~v~~~~~~~~~s~f~~vpGl~g~~g~vSles~~~pg~~~~~~ 791 (863)
+-..+.+-.|-+.---.+.+|..|.+.--- .+..||||-.|+||.|+-+-
T Consensus 197 LHAN~keHSVeLqKcE~~lpdQaff~lh~~--ss~~vsfeck~~pg~~igvk 246 (268)
T PF15095_consen 197 LHANNKEHSVELQKCENPLPDQAFFVLHKK--SSECVSFECKNNPGVFIGVK 246 (268)
T ss_dssp EEEETTTTEEEEEE--SS--TTT-EEEEE---SSS-EEEEESSSTTEEEEES
T ss_pred EecCCccceeeeeecCCCCCcceeEEEecC--CCceeEEEecCCCceEEeee
Confidence 877778887887766667889888887433 36899999999999999654
No 52
>PLN02175 endoglucanase
Probab=75.76 E-value=17 Score=43.15 Aligned_cols=160 Identities=11% Similarity=0.054 Sum_probs=75.9
Q ss_pred CCCCCCCCcCccCcccchHHH-HHHHHHHhcCc------HHHHHHHHHHHHHHHHHHHhcCCcccccCCc-----hhhhh
Q 002940 167 YGGWEEPSCELRGHFVGHYLS-ASALMWASTHN------ESLKEKMSAVVSALSACQKEIGSGYLSAFPT-----EQFDR 234 (863)
Q Consensus 167 ygGWE~~~~~l~Gh~~GhyLs-ala~~ya~TgD------~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~-----~~~~r 234 (863)
-|||-..+-..+=.++..|-. .|++.+-..+| +++++.++.-.|+|++||...+++...-.-+ ..|.+
T Consensus 69 sGGwyDAGD~vKf~~p~A~t~t~LaW~~~e~~~~~~~~~~~~l~~lkw~~Dyllk~~~~~~g~vy~qVG~~~~Dh~~W~~ 148 (484)
T PLN02175 69 TGGYYDAGDNVKFNFPMAFTTTMLSWSALEYGKRMGPELENARVNIRWATDYLLKCARATPGKLYVGVGDPNVDHKCWER 148 (484)
T ss_pred CCCeeeCCCCCeeCchHHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHHHHHhCcCCCCCeEEEEeCCCCCCcccCCC
Confidence 468876554444455656533 33333322222 3456666777888999996322222211100 01111
Q ss_pred hhhc---CCCccch------hhHHHHHHHHHHHHHHcCC------HhHHHHHHHHHHHHHHHhhhhhccchhhhhhcccc
Q 002940 235 LEAL---IPVWAPY------YTIHKILAGLLDQYTYADN------AEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLN 299 (863)
Q Consensus 235 ~~~l---~~~W~py------Yt~HKI~aGLld~Y~~tGn------~~AL~va~~~ad~~~~r~~~~~~~~~~~~~~~~l~ 299 (863)
-|+. +.....- =..-.+-|.|-++++.-.+ ++.|+.|+++-+|..+.-+.+....+. .....-
T Consensus 149 PE~~~~~R~~~~is~~~PGSd~aae~AAALAaaS~vfk~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~~~~~--~~~~~Y 226 (484)
T PLN02175 149 PEDMDTPRTVYSVSPSNPGSDVAAETAAALAAASMVFRKVDSKYSRLLLATAKKVMQFAIQYRGAYSDSLSS--SVCPFY 226 (484)
T ss_pred hhHccCccceEecCCCCCccHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhCCCCcccCccc--cccCcc
Confidence 1211 1111000 0011133334344554333 467888999888887532211100000 000011
Q ss_pred ccccchH----HHHHHHHHhcCCHHHHHHHhhc
Q 002940 300 EEAGGMN----DVLYKLFCITQDPKHLMLAHLF 328 (863)
Q Consensus 300 ~E~GGmn----e~L~~LY~~TGd~ryL~lA~~f 328 (863)
+..+|.+ .+-+|||..|||++||+.++.+
T Consensus 227 ~s~s~y~DEl~WAAawLY~ATgd~~Yl~~~~~~ 259 (484)
T PLN02175 227 CSYSGYKDELMWGASWLLRATNDPYYANFIKSL 259 (484)
T ss_pred ccCCCccHHHHHHHHHHHHHhCCHHHHHHHHHc
Confidence 1222333 4557999999999999987754
No 53
>PLN02308 endoglucanase
Probab=75.07 E-value=38 Score=40.46 Aligned_cols=171 Identities=9% Similarity=-0.012 Sum_probs=84.3
Q ss_pred HHHHhcCCCCC----CCCCCCCCCCCcCccCcccchHHH-HHHHHHHhcC------cHHHHHHHHHHHHHHHHHHHhcCC
Q 002940 153 NFRKTARLPAP----GEPYGGWEEPSCELRGHFVGHYLS-ASALMWASTH------NESLKEKMSAVVSALSACQKEIGS 221 (863)
Q Consensus 153 ~FR~~agL~~~----g~~ygGWE~~~~~l~Gh~~GhyLs-ala~~ya~Tg------D~~lk~k~~~~Vd~L~~~Q~~~~d 221 (863)
.+|..+++... -.-.|||-..+-..+=.+++.|-. .|++.|.... .+.+++.++.-.|+|.+||. ++
T Consensus 55 ~Wr~~s~~~dg~~~~~DlsGGWyDAGD~~Ky~~p~a~s~t~L~w~~~e~~~~~~~e~~~~ldeikw~~D~llkm~~--~~ 132 (492)
T PLN02308 55 KWRRDSALHDGSSAGVDLTGGYYDAGDNVKFGFPMAFTTTLMSWSIIDFGRTMGPELENAVKAVKWATDYLMKATA--IP 132 (492)
T ss_pred CCcccCcCCCCCCCeeeCCCCceeCCCcCeecCchHHHHHHHHHHHHHhHhhhcchhHHHHHHHHHHHHHHHHhcC--CC
Confidence 56666665421 135689976654444444555532 3344333322 24567778888999999998 45
Q ss_pred cccccC-Cc-----hhhhhhhhc---CCCcc-----ch-hhHHHHHHHHHHHHHHcCC------HhHHHHHHHHHHHHHH
Q 002940 222 GYLSAF-PT-----EQFDRLEAL---IPVWA-----PY-YTIHKILAGLLDQYTYADN------AEALRMTTWMVEYFYN 280 (863)
Q Consensus 222 GYlga~-p~-----~~~~r~~~l---~~~W~-----py-Yt~HKI~aGLld~Y~~tGn------~~AL~va~~~ad~~~~ 280 (863)
|-+-.- -. ..|.+-|+. +.... |- -..-.+-+.|-.+++.-.+ ++.|+.|+++-+|..+
T Consensus 133 ~~vy~qVg~~~~dh~~W~~Pe~~~~~R~~y~~~~~~pgSd~a~~~AAAlA~as~vf~~~D~~YA~~lL~~Ak~ly~fa~~ 212 (492)
T PLN02308 133 NVVYVQVGDAYSDHNCWERPEDMDTLRTVYKIDPSHPGSDVAGETAAALAAASIVFRKRDPAYSRLLLDRAVRVFAFADK 212 (492)
T ss_pred CeEEEEecCCCCCccCCCChhHcCCcceEEecCCCCCcchHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 443210 00 011111111 11100 10 0112233444455665442 4678888888888875
Q ss_pred Hhhhhhccchhhhhhccccccccc----hHHHHHHHHHhcCCHHHHHHHhh
Q 002940 281 RVQNVIKKYSIERHWQTLNEEAGG----MNDVLYKLFCITQDPKHLMLAHL 327 (863)
Q Consensus 281 r~~~~~~~~~~~~~~~~l~~E~GG----mne~L~~LY~~TGd~ryL~lA~~ 327 (863)
.-+.+........ . ..-+...| +..+-+|||..|||++||+.++.
T Consensus 213 ~~g~y~~~~~~~~-~-~~Y~~~s~~~DEl~WAAawLy~ATgd~~Yl~~~~~ 261 (492)
T PLN02308 213 YRGAYSSSLHAAV-C-PFYCDFNGYQDELLWGAAWLHKASRRREYREYIVK 261 (492)
T ss_pred cCCcccCCCCccc-C-CCcCCCCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3221100000000 0 00011111 23455799999999999997765
No 54
>PLN02420 endoglucanase
Probab=73.86 E-value=35 Score=41.11 Aligned_cols=172 Identities=9% Similarity=0.018 Sum_probs=85.9
Q ss_pred HHHHhcCCCCCC----CCCCCCCCCCcCccCcccchHH-HHHHHHHHhc--------CcHHHHHHHHHHHHHHHHHHHhc
Q 002940 153 NFRKTARLPAPG----EPYGGWEEPSCELRGHFVGHYL-SASALMWAST--------HNESLKEKMSAVVSALSACQKEI 219 (863)
Q Consensus 153 ~FR~~agL~~~g----~~ygGWE~~~~~l~Gh~~GhyL-sala~~ya~T--------gD~~lk~k~~~~Vd~L~~~Q~~~ 219 (863)
.+|..+++.... .-.|||-..+-..+=.+++.|- ..|++.|..- +-+.+++.++.-+|+|++||..
T Consensus 68 ~Wr~~s~~~Dg~~~~~DlsGGwyDAGD~~Kf~~p~a~t~~~L~w~~~ef~d~~~~~g~~~d~Ldeikw~lD~llk~~~~- 146 (525)
T PLN02420 68 TWRDHSGLTDGLEQGVDLVGGYHDAGDHVKFGLPMAFTVTMLSWSVIEYGDQLASTGELSHALEAIKWGTDYFIKAHTS- 146 (525)
T ss_pred cccccCcCcCCCcCcccCCCcceecCccceecchHHHHHHHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhCcC-
Confidence 366666665211 2458897665445555566663 3455555433 3467889999999999999973
Q ss_pred CCccc-ccCC-----chhhhhhhhc---CCCcc-----ch-hhHHHHHHHHHHHHHHcCC------HhHHHHHHHHHHHH
Q 002940 220 GSGYL-SAFP-----TEQFDRLEAL---IPVWA-----PY-YTIHKILAGLLDQYTYADN------AEALRMTTWMVEYF 278 (863)
Q Consensus 220 ~dGYl-ga~p-----~~~~~r~~~l---~~~W~-----py-Yt~HKI~aGLld~Y~~tGn------~~AL~va~~~ad~~ 278 (863)
++-+ .-.- -..|.+-|+. +.... |- -..-.+-+.|-.+++.-.+ ++.|+.|+++-+|.
T Consensus 147 -~~~~~~qvGdg~~DH~~w~~Pe~~~~~R~~~~i~~~~pgsd~aa~~AAALA~AS~vfk~~D~~YA~~~L~~Ak~ly~fA 225 (525)
T PLN02420 147 -PNVLWAEVGDGDTDHYCWQRPEDMTTSRRAFKIDENNPGSDIAGETAAAMAAASIVFRSTNPHYSHLLLHHAQQLFEFG 225 (525)
T ss_pred -CCceEEeeCCCCcccccccChhhccccCceEEecCCCCccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 2211 0000 0011111111 11100 00 0011122333344554333 46788888888888
Q ss_pred HHHhhhhhccchh-hhhhc---cccccccchHHHHHHHHHhcCCHHHHHHHhhcc
Q 002940 279 YNRVQNVIKKYSI-ERHWQ---TLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFD 329 (863)
Q Consensus 279 ~~r~~~~~~~~~~-~~~~~---~l~~E~GGmne~L~~LY~~TGd~ryL~lA~~f~ 329 (863)
.+.-+..-...+. ..... -...| +..+-+|||+.|||+.||+.+....
T Consensus 226 ~~~~g~y~~~~~~~~g~Y~s~s~y~DE---l~WAAawLY~ATgd~~Yl~~a~~~~ 277 (525)
T PLN02420 226 DKYRGKYDESLKVVKSYYASVSGYMDE---LLWGATWLYRATDNEHYMSYVVDMA 277 (525)
T ss_pred HhcCCccCCCCcccCCCCCCcCcccHH---HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6422111000000 00000 01122 3356689999999999999886543
No 55
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=72.82 E-value=6.9 Score=45.99 Aligned_cols=72 Identities=19% Similarity=0.168 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhhccchhhhh----hccccccccchHHHHHHHHHhcCCHHHHHHHhh
Q 002940 252 LAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERH----WQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHL 327 (863)
Q Consensus 252 ~aGLld~Y~~tGn~~AL~va~~~ad~~~~r~~~~~~~~~~~~~----~~~l~~E~GGmne~L~~LY~~TGd~ryL~lA~~ 327 (863)
+..++.+|+.++++...++++.|++.+- ++. +.....+.. ......- -+..++.+||+.|++++||++|..
T Consensus 390 ll~~vra~~~s~D~~Lw~~~~~m~~~~g--LGd-ig~~~~~~~~~~~~~~~~sp--~~L~allEL~~atq~~~~l~lA~~ 464 (557)
T PF06917_consen 390 LLPYVRAYRLSRDPELWDLARTMAHHFG--LGD-IGNAAGKEPRVNMQTDNASP--YLLFALLELYQATQDARYLELADQ 464 (557)
T ss_dssp HHHHHHHHHHS--HHHHHHHHHHHHHTT---EE--TTBTTBS-EE-TT-----H--HHHHHHHHHHHHH--HHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhcC--ccc-ccCccccccccccCCCCCCH--HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3446688999999999999999998652 221 111111110 0000000 022577899999999999999987
Q ss_pred c
Q 002940 328 F 328 (863)
Q Consensus 328 f 328 (863)
+
T Consensus 465 ~ 465 (557)
T PF06917_consen 465 V 465 (557)
T ss_dssp H
T ss_pred H
Confidence 5
No 56
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=70.80 E-value=34 Score=38.50 Aligned_cols=143 Identities=16% Similarity=0.325 Sum_probs=80.7
Q ss_pred CCCCCCCCcCccCcccchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCcccccCCchhhhhhhhcCCCccchh
Q 002940 167 YGGWEEPSCELRGHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYY 246 (863)
Q Consensus 167 ygGWE~~~~~l~Gh~~GhyLsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~~~~~r~~~l~~~W~pyY 246 (863)
-|.|-+-+.-+ |--.--|-+-+-.+|..+||+.+.+|-+.--+.+.+.-. --| .|- .-+.+-|-.
T Consensus 236 sgdw~rkdsgi-gagidsyyey~lkayillgddsfldrfn~hydai~ryi~--------k~p--i~l----dvhihkp~l 300 (587)
T KOG2430|consen 236 SGDWTRKDSGI-GAGIDSYYEYLLKAYILLGDDSFLDRFNKHYDAIKRYIN--------KGP--IFL----DVHIHKPML 300 (587)
T ss_pred cCcceecccCc-CcchHHHHHHHHHHhheeccHHHHHHHHHHHHHHHHHhc--------CCC--eEE----EEecccchh
Confidence 35686554332 222335667778889999999999999888777764333 211 000 013333433
Q ss_pred hHHHHHHHHHHHH----HHcCCHhHHHHHHHHHHHHHHHhhh--hhcc-ch--hhhhhc--cccccccchHHHHHHHHHh
Q 002940 247 TIHKILAGLLDQY----TYADNAEALRMTTWMVEYFYNRVQN--VIKK-YS--IERHWQ--TLNEEAGGMNDVLYKLFCI 315 (863)
Q Consensus 247 t~HKI~aGLld~Y----~~tGn~~AL~va~~~ad~~~~r~~~--~~~~-~~--~~~~~~--~l~~E~GGmne~L~~LY~~ 315 (863)
+.--.|-+|++.+ .+-|+-+ -|+.|.+-+.+..++ .++. .+ .+-||. ++.+| ..++-|-||+.
T Consensus 301 ~ar~~mdallaf~pglqvlkgdik---~aie~heml~qvikkh~flpeaft~df~vhwaehpirpe---faestyflyka 374 (587)
T KOG2430|consen 301 AARGFMDALLAFFPGLQVLKGDIK---EAIEMHEMLFQVIKKHKFLPEAFTHDFQVHWAEHPIRPE---FAESTYFLYKA 374 (587)
T ss_pred hHhhHHHHHHHhCcchhhhccccH---HHHHHHHHHHHHHHHcccChHhhcccceeecccCCCChh---hhhhheeeecc
Confidence 3333445554332 2334422 344444444433322 1111 11 233453 45666 46889999999
Q ss_pred cCCHHHHHHHhhccc
Q 002940 316 TQDPKHLMLAHLFDK 330 (863)
Q Consensus 316 TGd~ryL~lA~~f~~ 330 (863)
|||+.||+.|+.+++
T Consensus 375 t~dp~yl~v~k~iid 389 (587)
T KOG2430|consen 375 TGDPHYLEVAKQIID 389 (587)
T ss_pred cCCchHHHHHHHHHH
Confidence 999999999998765
No 57
>PLN02171 endoglucanase
Probab=69.98 E-value=46 Score=40.95 Aligned_cols=171 Identities=9% Similarity=0.026 Sum_probs=83.3
Q ss_pred HHHHhcCCCCC----CCCCCCCCCCCcCccCcccchHHH-HHHHHHHhc--------CcHHHHHHHHHHHHHHHHHHHhc
Q 002940 153 NFRKTARLPAP----GEPYGGWEEPSCELRGHFVGHYLS-ASALMWAST--------HNESLKEKMSAVVSALSACQKEI 219 (863)
Q Consensus 153 ~FR~~agL~~~----g~~ygGWE~~~~~l~Gh~~GhyLs-ala~~ya~T--------gD~~lk~k~~~~Vd~L~~~Q~~~ 219 (863)
.+|..+++... -.--|||-+.+-..+=.+++.|-. .|++.+..- .-+.+++.++.-.|+|.+||..
T Consensus 57 ~Wr~~s~~~Dg~~~~vDlsGGwyDAGD~vKf~~p~a~s~t~L~w~~~e~~~~~~~~g~~~~~Ldeikw~~Dyllk~~~~- 135 (629)
T PLN02171 57 TWRANSGLFDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSIIEYGKQMAAAGELGHAMDAVKWGTDYFIKAHPE- 135 (629)
T ss_pred CCccCCCCCCCCcCcccCCCCceeCCCCceeccchHHHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHHHHhccC-
Confidence 46666665421 134588976654455455666533 334332221 2246778888899999999973
Q ss_pred CCccccc-CCc-----hhhhhhhhc---CCCc-----cch-hhHHHHHHHHHHHHHHcCC------HhHHHHHHHHHHHH
Q 002940 220 GSGYLSA-FPT-----EQFDRLEAL---IPVW-----APY-YTIHKILAGLLDQYTYADN------AEALRMTTWMVEYF 278 (863)
Q Consensus 220 ~dGYlga-~p~-----~~~~r~~~l---~~~W-----~py-Yt~HKI~aGLld~Y~~tGn------~~AL~va~~~ad~~ 278 (863)
+|-|-. .-. ..|.+-|+. +... .|- =..-.+-|.|-++++.-.+ ++.|+.|+++-+|.
T Consensus 136 -~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaaS~vfk~~D~~YA~~lL~~Ak~ly~fA 214 (629)
T PLN02171 136 -PNVLYGEVGDGDTDHYCWQRPEDMTTDRQAYRIDPQNPGSDLAGETAAAMAAASIVFRRSNPGYANELLTHAKQLFDFA 214 (629)
T ss_pred -CCeEEEEeCCCCccccCcCChhHccccceeEEecCCCCchHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHH
Confidence 221110 000 011111111 1110 010 0112233444445554433 46788888888888
Q ss_pred HHHhhhhhccchhh-hhhcc---ccccccchHHHHHHHHHhcCCHHHHHHHhhc
Q 002940 279 YNRVQNVIKKYSIE-RHWQT---LNEEAGGMNDVLYKLFCITQDPKHLMLAHLF 328 (863)
Q Consensus 279 ~~r~~~~~~~~~~~-~~~~~---l~~E~GGmne~L~~LY~~TGd~ryL~lA~~f 328 (863)
.+.-+..-...+.. ..... ...| +..+-+|||..|||++||+.++..
T Consensus 215 ~~~~g~y~~~~~~~~~~Y~s~s~y~DE---l~WAAawLy~ATgd~~Yl~~~~~~ 265 (629)
T PLN02171 215 DKYRGKYDSSITVAQKYYRSVSGYGDE---LLWAAAWLYQATNNQYYLDYLGNN 265 (629)
T ss_pred HhCCCcccCCCcccCCccCCCCCccHH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 65311110000000 00000 0112 335667999999999999987654
No 58
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=68.48 E-value=4.4 Score=37.24 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCccccc
Q 002940 185 YLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSA 226 (863)
Q Consensus 185 yLsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga 226 (863)
.+.++..++...+++...+.+++-++.|.++|. +||-++-
T Consensus 28 ~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~--~dG~w~~ 67 (109)
T PF13243_consen 28 VTAALILALAAAGDAAVDEAIKKAIDWLLSHQN--PDGGWGY 67 (109)
T ss_dssp -------------TS-SSBSSHHHHHHHHH-----TTS--S-
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHhcC--CCCCCCC
Confidence 344566667777888999999999999999999 8886543
No 59
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=65.99 E-value=42 Score=42.35 Aligned_cols=152 Identities=18% Similarity=0.187 Sum_probs=81.8
Q ss_pred HhcCcHHHHHHHHHHHHHHHHHHH-hcCCcccccCCchhhhhhhhcCCCccchhhHHHHHHHHHHHHHHcCCHhHHHHHH
Q 002940 194 ASTHNESLKEKMSAVVSALSACQK-EIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTT 272 (863)
Q Consensus 194 a~TgD~~lk~k~~~~Vd~L~~~Q~-~~~dGYlga~p~~~~~r~~~l~~~W~pyYt~HKI~aGLld~Y~~tGn~~AL~va~ 272 (863)
..||...+++.+.+++..+.+.=+ .+.+==+|++ ++.=+-.| +|.-.|.++++..+..-+.
T Consensus 661 ~vtgk~~Y~~ia~~~L~~~~~sv~~~~~~~~iga~-----------~G~~g~~y-------al~~I~~~~~~~~l~~~~~ 722 (963)
T COG4403 661 LVTGKDYYKEIAIKALQDSRKSVNNNLNPINIGAF-----------TGLSGYFY-------ALWKIYSVTRDNYLIQSAE 722 (963)
T ss_pred HhcChHHHHHHHHHHHHHHHHhhhhccCCcccccc-----------cccchhhh-------hhHHHHHhcccHHHHHHHH
Confidence 479999999999888766654422 2111011111 11112223 2334567788887766666
Q ss_pred HHHHHHHHHhhhhhccchhhhhhccccccccchHHHHHHHHHhcCCHHHHHHHhhcccccccchhhccCCCCC-CCcccC
Q 002940 273 WMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDIS-GFHSNT 351 (863)
Q Consensus 273 ~~ad~~~~r~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~ryL~lA~~f~~~~~~~~la~~~D~l~-~~Hant 351 (863)
+.+..+...... . +. ...+++-- |.--+|..+|+.|.++|.|++|.-.-+..+.+ ..+.|... -.....
T Consensus 723 ~~i~~le~~v~~----~--~~-~d~i~Gl~-g~i~~L~~iYk~~~epk~l~~ais~~~~l~~~--~v~~d~s~~~l~gfs 792 (963)
T COG4403 723 NSIRHLEILVQK----S--KD-PDFINGLA-GVICVLVSIYKLTDEPKFLELAISLGRILMEK--IVGNDSSETVLLGFS 792 (963)
T ss_pred HHHHHHHHHHhh----c--cC-cchhhccH-HHHHHHHHHHhhccchHHHHHHHHHHHHHHHH--hhccccccceecccc
Confidence 666655432211 0 00 01111111 34468899999999999999997654322211 11222211 011122
Q ss_pred CCC--eeehhhHHHHHhCCchhhc
Q 002940 352 HIP--IVIGSQMRYEVTGDQLHKE 373 (863)
Q Consensus 352 hiP--~~~G~A~~Y~~TGD~~yl~ 373 (863)
|.. ++...+.+|++|||+.+++
T Consensus 793 hg~sgi~~tL~~ly~~T~e~~l~~ 816 (963)
T COG4403 793 HGASGIILTLLKLYEATGEESLLK 816 (963)
T ss_pred cchHHHHHHHHHHHHhcCcHHHHH
Confidence 333 2334567799999999987
No 60
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=65.30 E-value=37 Score=38.22 Aligned_cols=98 Identities=17% Similarity=0.088 Sum_probs=59.4
Q ss_pred HhHHHHHHHHHHHHHHH-hh--hhhccchhhhhhcccccccc--chHHHHHHHHHhcCCHHHHHHHhhcc----cccccc
Q 002940 265 AEALRMTTWMVEYFYNR-VQ--NVIKKYSIERHWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFD----KPCFLG 335 (863)
Q Consensus 265 ~~AL~va~~~ad~~~~r-~~--~~~~~~~~~~~~~~l~~E~G--Gmne~L~~LY~~TGd~ryL~lA~~f~----~~~~~~ 335 (863)
++.++.++.-.||+.+. |. ++..... .+-....|--|| ||...|.+.|++-++++||+-|..-- +..++.
T Consensus 241 ~~~~~dVK~sldym~~~rfpsGNyP~s~~-~~~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGlLk 319 (403)
T KOG2787|consen 241 PALLKDVKGSLDYMIQNRFPSGNYPSSEG-NKRDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGLLK 319 (403)
T ss_pred hhHHHhhhhHHHHHHHccCCCCCCCcccC-CCcceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 34577888999999853 22 1111111 111122333455 78899999999999999998886642 333321
Q ss_pred hhhccCCCCCCCcccCCCCe--eehhhHHHHHhCCchhhc
Q 002940 336 LLALQADDISGFHSNTHIPI--VIGSQMRYEVTGDQLHKE 373 (863)
Q Consensus 336 ~la~~~D~l~~~HanthiP~--~~G~A~~Y~~TGD~~yl~ 373 (863)
.+.. -.|... .+-+..+|++|||.+|+-
T Consensus 320 ---kg~G-------ichGvaGNaYvFLsLyRLT~d~kYly 349 (403)
T KOG2787|consen 320 ---KGVG-------ICHGVAGNAYVFLSLYRLTGDMKYLY 349 (403)
T ss_pred ---cCCc-------ccccccCchhhhHhHHHHcCcHHHHH
Confidence 1111 123322 244778899999999987
No 61
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=62.51 E-value=9.7 Score=42.26 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhhcccccchHHHHHHHHHhhhcccccCCCCCCcEEEeccCCC
Q 002940 409 TTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAP 461 (863)
Q Consensus 409 at~nmlkl~~~L~~~tgD~~YaD~~ERalyN~iLa~q~~~~~g~~~Y~~PL~~ 461 (863)
+|+.-|++.-++++.++|.+|-|.++|++ |-||+.|++ .+|=..| -|++.
T Consensus 45 aT~~e~~fLa~~y~~t~d~~y~~A~~rgl-d~LL~aQyp-nGGWPQf-~p~~~ 94 (290)
T TIGR02474 45 ATVTEIRYLAQVYQQEKNAKYRDAARKGI-EYLLKAQYP-NGGWPQF-YPLKG 94 (290)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHHHHH-HHHHhhhCC-CCCcCcc-cCCcC
Confidence 56666777777899999999999999998 899999997 6554443 37654
No 62
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=59.23 E-value=5.4 Score=44.18 Aligned_cols=167 Identities=16% Similarity=0.042 Sum_probs=87.6
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCcccccCCchhhhhh-h---h--cCCCccchhhHHHHHHHHHHHH-HH
Q 002940 189 SALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRL-E---A--LIPVWAPYYTIHKILAGLLDQY-TY 261 (863)
Q Consensus 189 la~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~~~~~r~-~---~--l~~~W~pyYt~HKI~aGLld~Y-~~ 261 (863)
+..+|..++++.+.+.+..+++.|.+-......... .....+ . + .-|.+. + |+..|...| +.
T Consensus 115 ll~~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~G~aHG~~----G--i~~~L~~~~~~~ 183 (355)
T PF05147_consen 115 LLSLYEKTKDPKYLDIIEKILEKLLESIINDDPSEN-----QIGSEWKEGFINLGFAHGIA----G--ILYALLRLYKKG 183 (355)
T ss_dssp HCCHHHHHCCHHS-HHHHHHHHHCCCHHCCCHTCCG-----SSSHHCHTTBEE-STTTSHH----H--HHHHHCHCCHHT
T ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHhhcccccC-----CCccccCCCCccCCccccHH----H--HHHHHHHhhhcc
Confidence 344556678999888888888887766652110000 011111 0 0 112222 2 455565667 58
Q ss_pred cCCHhHHHHHHHHHHHHHHHhhhhhccchh----hhhh-cccccccc--chHHHHHHHHHhcCCHHHHHHHhhccccccc
Q 002940 262 ADNAEALRMTTWMVEYFYNRVQNVIKKYSI----ERHW-QTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDKPCFL 334 (863)
Q Consensus 262 tGn~~AL~va~~~ad~~~~r~~~~~~~~~~----~~~~-~~l~~E~G--Gmne~L~~LY~~TGd~ryL~lA~~f~~~~~~ 334 (863)
+++++.++++.++.+|..+.....-..++. .... ..-.| +| ||-.++..+++.++|+.+.+.++.+.+....
T Consensus 184 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WC-~G~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (355)
T PF05147_consen 184 TKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKSRPSWC-YGSPGILLALLKAYKILDDEEYDEEAEQALESILQ 262 (355)
T ss_dssp --HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC--SSS-SSHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCccccccccccc-cCcHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 899999999999999998765321111110 1000 11112 34 7778999999999999999998876543221
Q ss_pred chhhccCCCCCCCcccCCCCe--eehhhHHHHHhCCchhhc
Q 002940 335 GLLALQADDISGFHSNTHIPI--VIGSQMRYEVTGDQLHKE 373 (863)
Q Consensus 335 ~~la~~~D~l~~~HanthiP~--~~G~A~~Y~~TGD~~yl~ 373 (863)
.. . ...-....|.-. +.-....|+.++++.|++
T Consensus 263 ~~-----~-~~~~~~lCHG~aG~~~~l~~~~~~~~~~~~~~ 297 (355)
T PF05147_consen 263 KG-----L-FLNNPSLCHGTAGILEILLDLYKYTGDEEYKE 297 (355)
T ss_dssp H------T-CTTSS-STTSHHHHHHHHHHHHHHH--HCCHH
T ss_pred cc-----c-cCCCCceeCchHHhHHHHHHHHHHcCCHHHHH
Confidence 10 0 000011223332 222566799999998877
No 63
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=58.70 E-value=37 Score=40.22 Aligned_cols=88 Identities=17% Similarity=0.249 Sum_probs=53.5
Q ss_pred ccchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCcccccCCchhhhhhhhcCCCccchhhHHHHHHHHHHHHH
Q 002940 181 FVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYT 260 (863)
Q Consensus 181 ~~GhyLsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~~~~~r~~~l~~~W~pyYt~HKI~aGLld~Y~ 260 (863)
..++||=+++.+|+.++|++|.+-+..|.... +=|=|+..+..- -++ ++...-+-.| ++.++++.|+
T Consensus 385 ~~~~yll~~vra~~~s~D~~Lw~~~~~m~~~~-------gLGdig~~~~~~-~~~-~~~~~~~sp~----~L~allEL~~ 451 (557)
T PF06917_consen 385 ADPDYLLPYVRAYRLSRDPELWDLARTMAHHF-------GLGDIGNAAGKE-PRV-NMQTDNASPY----LLFALLELYQ 451 (557)
T ss_dssp --HHHHHHHHHHHHHS--HHHHHHHHHHHHHT-------T-EE-TTBTTBS--EE--TT-----HH----HHHHHHHHHH
T ss_pred CchhHhHHHHHHHHcCCCHHHHHHHHHHHhhc-------CcccccCccccc-ccc-ccCCCCCCHH----HHHHHHHHHH
Confidence 35789999999999999999998888775532 445555443210 011 1222223333 3455779999
Q ss_pred HcCCHhHHHHHHHHHHHHHHH
Q 002940 261 YADNAEALRMTTWMVEYFYNR 281 (863)
Q Consensus 261 ~tGn~~AL~va~~~ad~~~~r 281 (863)
.|++++.++.|.++++-+.++
T Consensus 452 atq~~~~l~lA~~~g~~l~~~ 472 (557)
T PF06917_consen 452 ATQDARYLELADQVGENLFEQ 472 (557)
T ss_dssp HH--HHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999988754
No 64
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=58.61 E-value=83 Score=37.79 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCcccccCC
Q 002940 183 GHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFP 228 (863)
Q Consensus 183 GhyLsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p 228 (863)
|+-+-|.+.+|..|+|+-++.-++.+.++|.+--..-..|+.++..
T Consensus 339 ~QL~~aysdafklT~de~y~~va~~I~qYl~rdlsh~~GGfysaED 384 (786)
T KOG2244|consen 339 GQLANAYSDAFKLTKDEMYSYVARDILQYLRRDLSHPEGGFYSAED 384 (786)
T ss_pred HHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHhccCCCCCcccccc
Confidence 4556677788889999999999999999998733322557777654
No 65
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=46.87 E-value=81 Score=35.19 Aligned_cols=87 Identities=16% Similarity=0.132 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCcccccCCchhhhhhhhcCCCccchh---hHHHHHHHHHHHHHHcC
Q 002940 187 SASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYY---TIHKILAGLLDQYTYAD 263 (863)
Q Consensus 187 sala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~~~~~r~~~l~~~W~pyY---t~HKI~aGLld~Y~~tG 263 (863)
-=|+.+|..++|+.+++.+.+-|+.|++.|-.+ .||=.-+|.. ..=..+.++. .+| +|.-|.+.+..-+
T Consensus 51 ~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypn-GGWPQf~p~~------~~Y~~~ITfND~am~~-vl~lL~~i~~~~~ 122 (290)
T TIGR02474 51 RYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPN-GGWPQFYPLK------GGYSDAITYNDNAMVN-VLTLLDDIANGKD 122 (290)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCC-CCcCcccCCc------CCcccccccCcHHHHH-HHHHHHHHHhccC
Confidence 347899999999999999999999999999942 2443222211 0000111111 122 3333445454322
Q ss_pred ---------CHhHHHHHHHHHHHHHHH
Q 002940 264 ---------NAEALRMTTWMVEYFYNR 281 (863)
Q Consensus 264 ---------n~~AL~va~~~ad~~~~r 281 (863)
.+++...+.|..+|+.+-
T Consensus 123 ~~~~~~~~~~~r~~~Ai~Rgid~ILkt 149 (290)
T TIGR02474 123 PFDVFPDSTRTRAKTAVTKGIECILKT 149 (290)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHh
Confidence 257778888888888753
No 66
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=42.88 E-value=99 Score=37.23 Aligned_cols=230 Identities=16% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCcccccCCchhhhhhhhcCCCccchh--------------hHHH
Q 002940 185 YLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYY--------------TIHK 250 (863)
Q Consensus 185 yLsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~~~~~r~~~l~~~W~pyY--------------t~HK 250 (863)
|++++=-+|+.+||+-+++|+..+-+.|+.+-. .|+..-..+.+.....+-.| ++|+
T Consensus 267 F~GGllsay~lsge~~f~~kA~~igdkLLpAfn---------tptGIp~~~vn~ksG~~~n~~wasgg~SILaE~gtlhl 337 (625)
T KOG2204|consen 267 FVGGLLSAYALSGEEMFLEKAPEIGDKLLPAFN---------TPTGIPKALVNNKSGDADNYGWASGGSSILAEFGTLHL 337 (625)
T ss_pred eehhhHHHhhhcccHHHHHhhHHHHHHhhhccc---------CCCCCchhhhccccCccCCcccccCcchHhhhcCceee
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhh------hhccchhhhhhccccccccchH----HHHHHHHHhcCCHH
Q 002940 251 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQN------VIKKYSIERHWQTLNEEAGGMN----DVLYKLFCITQDPK 320 (863)
Q Consensus 251 I~aGLld~Y~~tGn~~AL~va~~~ad~~~~r~~~------~~~~~~~~~~~~~l~~E~GGmn----e~L~~LY~~TGd~r 320 (863)
-+.-| =..+|++..-+.+.+.-+-+.+...+ +|-..+. .|.-.+.+.|+|- |-|.+++-.|++..
T Consensus 338 ef~~L---S~ltg~P~~~ekv~~IRk~l~k~ekP~GLypnYinP~sg--~wgq~~tslg~lgDSfyeyllK~wl~s~kTd 412 (625)
T KOG2204|consen 338 EFSYL---SKLTGNPTFAEKVVKIRKVLNKSEKPHGLYPNYINPSSG--EWGQHHTSLGALGDSFYEYLLKAWLQSDKTD 412 (625)
T ss_pred ehHHh---hhccCCchHHHHHHHHHHHHHhhcCCCCCCcccccCCCC--chhhHHhHHhhhhhhHHHHHHHHHhhcCCcc
Q ss_pred HHHHHhhcccccccchhh--ccCCCCCCC------------cccCCCCee--------------ehhhHHHHHhCCchhh
Q 002940 321 HLMLAHLFDKPCFLGLLA--LQADDISGF------------HSNTHIPIV--------------IGSQMRYEVTGDQLHK 372 (863)
Q Consensus 321 yL~lA~~f~~~~~~~~la--~~~D~l~~~------------HanthiP~~--------------~G~A~~Y~~TGD~~yl 372 (863)
.-|+...+..+..-+. ....+.+++ |--.|..++ .|....|..-|.+.=.
T Consensus 413 --~eak~my~~am~Ai~~~li~~S~~s~ltyi~e~~~g~lehKm~hlacf~gGm~algA~~~~~~~~~~~y~el~~eia~ 490 (625)
T KOG2204|consen 413 --CEAKGMYEDAMIAIEKYLIFKSDGSGLTYISEWNGGGLEHKMGHLACFAGGMFALGAIKGDTVGSSKHYLELGGEIAT 490 (625)
T ss_pred --hHHHHhHHHHHHHHHhhheeccCCCCeEEEEecCCCchhhhhchhhcccccceeeccccCCCcchhHHHHHHhHHHHH
Q ss_pred c-ccee--ccccCCCCCCCCcCCccccccCCCCCccchhHHHHHHHHHHHhhcccccchHHHH
Q 002940 373 E-GHQL--ESSGTNIGHFNFKSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADY 432 (863)
Q Consensus 373 ~-~h~y--~tGG~s~~E~~~f~~p~~l~~~l~~~~~EtCat~nmlkl~~~L~~~tgD~~YaD~ 432 (863)
+ +.+| .+=..|..- +|.....-+........=-.---|.+...-+|+|+|||.+|-++
T Consensus 491 TchesY~rt~T~lgpes--f~fn~~~ea~~~r~~EsyyILrpEviEs~fYlwRlT~d~kyR~w 551 (625)
T KOG2204|consen 491 TCHESYTRTTTKLGPES--FWFNHGVEAFAVRKVESYYILRPEVIESYFYLWRLTGDQKYRSW 551 (625)
T ss_pred HHHHHHhccccccChhh--hcccCccchhhhhcccceeecCHHHHHHHHHHhhhcCChhHHHH
No 67
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=42.13 E-value=38 Score=30.93 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=35.7
Q ss_pred HHHH--HHHHHHHHHhcCCcccccCCchhhhhhhhcCCCccchhhHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHH
Q 002940 205 MSAV--VSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNR 281 (863)
Q Consensus 205 ~~~~--Vd~L~~~Q~~~~dGYlga~p~~~~~r~~~l~~~W~pyYt~HKI~aGLld~Y~~tGn~~AL~va~~~ad~~~~r 281 (863)
.+++ ++.|.++|. +||-++..+... ..+ .++ ...++ ......+.++..+.+.+..+|+.+.
T Consensus 42 ~~~~~~~~~L~~~q~--~dGg~~~~~~~~------~~~---~~~----t~~~l-~~l~~~~~~~~~~~~~~a~~~l~~~ 104 (113)
T PF13249_consen 42 RDRAAAVEWLLSQQN--PDGGWGSNPDGG------PPD---VYT----TYVAL-AALELLGRPDDEEAVRKAVDWLLSC 104 (113)
T ss_dssp HHHHHHHHHHHHHB---TTSGBBSSTTTT-------BS---HHH----HHHHH-HHHHHHT-GGCHTTHCCHHHHHHHT
T ss_pred HHHHHHHHHHHHhCC--CCCCccCCCCCC------Ccc---HHH----HHHHH-HHHHHcCCCcccHHHHHHHHHHHHh
Confidence 4555 999999999 888887765310 001 111 22333 2335556655567888899999764
No 68
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=35.90 E-value=1.3e+02 Score=38.09 Aligned_cols=58 Identities=21% Similarity=0.371 Sum_probs=42.3
Q ss_pred EEEEEEEeCCCCeeeEEEEeccCCccCCCcEEEECCeecCCC-CCCCEEEEEeecCCCCEEEEEe
Q 002940 542 RVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPLP-SPGNFLSVTKTWSSDDKLTIQL 605 (863)
Q Consensus 542 ~VtltV~~~~~~~~ftL~LRIP~Wa~~~~~~v~VNG~~~~~~-~~ggy~~I~R~Wk~GD~I~L~L 605 (863)
.++.+|+.. ...-.|.+-||-- + |.+++||||+++.. ..++|.-|.-. +...+|+++.
T Consensus 773 ~i~~~i~~~--~~~~~l~~sipy~-~--GW~~~vdGk~~~~~~~~~~f~g~~l~-~G~h~i~~~y 831 (843)
T PF09586_consen 773 HISGTITAT--SKDGYLVLSIPYD-K--GWKAYVDGKKVEIEKVNGGFMGVPLP-KGEHQIELKY 831 (843)
T ss_pred EEEEEEEec--CCCcEEEEEeccC-C--CCEEEECCEEccHhhhcCeEEEEEEc-CCceEEEEEE
Confidence 677777762 2334788889953 3 79999999999865 47889999876 4444677765
No 69
>PHA02651 IL-1 receptor antagonist; Provisional
Probab=34.44 E-value=28 Score=35.55 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=20.9
Q ss_pred CeEEEeecCCcceEEEEeeccCCCCcEEEE
Q 002940 774 RTVSLESETYKGCFVYTAVNLQSSESTKLG 803 (863)
Q Consensus 774 g~vSles~~~pg~~~~~~~~~~~g~~~~l~ 803 (863)
.+.+|||+.+||||+.... -.....|.|.
T Consensus 115 ~tstFESaafPgWfIsTs~-~e~~~PV~Lt 143 (165)
T PHA02651 115 HTSTFESVAFPGWFLCTSS-GDGIEPVGLT 143 (165)
T ss_pred CceEEEecCCCCcEEEecc-ccCCcceEee
Confidence 4999999999999997531 1112467776
No 70
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=33.28 E-value=77 Score=29.90 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=27.0
Q ss_pred CcEEEECCeecCCCCCCCEEEEEeecCCCCEEEEEecceeEEEec
Q 002940 570 GAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAI 614 (863)
Q Consensus 570 ~~~v~VNG~~~~~~~~ggy~~I~R~Wk~GD~I~L~LPm~lr~~~~ 614 (863)
+=.|.|||+.+.... .=+.||+|+|.|.-......+
T Consensus 33 ~GrV~vNG~~aKpS~---------~VK~GD~l~i~~~~~~~~v~V 68 (100)
T COG1188 33 GGRVKVNGQRAKPSK---------EVKVGDILTIRFGNKEFTVKV 68 (100)
T ss_pred CCeEEECCEEccccc---------ccCCCCEEEEEeCCcEEEEEE
Confidence 458999999875421 237899999999988777654
No 71
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=33.22 E-value=1.6e+02 Score=32.82 Aligned_cols=90 Identities=14% Similarity=0.115 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCcccccCCch--hhhhhhhcCCCccchhhHHHHHHHHHHHHHHcC
Q 002940 186 LSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTE--QFDRLEALIPVWAPYYTIHKILAGLLDQYTYAD 263 (863)
Q Consensus 186 Lsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga~p~~--~~~r~~~l~~~W~pyYt~HKI~aGLld~Y~~tG 263 (863)
|.-|+.+|..|+|+++++.+.+=|+.|++.|=. ..||=.-||.. ..+.+. .|++ +.-- +|-=|.+.+...+
T Consensus 45 i~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQyp-nGGWPQ~yP~~~~Y~~~IT-fNDd-am~~----vl~lL~~v~~~~~ 117 (289)
T PF09492_consen 45 IRFLARVYQATKDPRYREAFLKGLDYLLKAQYP-NGGWPQFYPLRGGYHDHIT-FNDD-AMVN----VLELLRDVAEGKG 117 (289)
T ss_dssp HHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-T-TS--BSECS--SGGGGSEE--GGG-HHHH----HHHHHHHHHCT-T
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCC-CCCCCccCCCCCCCCCceE-EccH-HHHH----HHHHHHHHHhhcC
Confidence 455899999999999999999999999999995 34665555531 111000 1111 1111 2222446666566
Q ss_pred CH---------hHHHHHHHHHHHHHHHh
Q 002940 264 NA---------EALRMTTWMVEYFYNRV 282 (863)
Q Consensus 264 n~---------~AL~va~~~ad~~~~r~ 282 (863)
+- ++.+.+.|-.++|.+..
T Consensus 118 ~~~~v~~~~~~r~~~A~~kgi~ciL~tQ 145 (289)
T PF09492_consen 118 DFAFVDESLRARARAAVDKGIDCILKTQ 145 (289)
T ss_dssp TSTTS-HHHHHHHHHHHHHHHHHHHHHS
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 88889999999998653
No 72
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=31.07 E-value=2.4e+02 Score=33.46 Aligned_cols=138 Identities=15% Similarity=0.136 Sum_probs=67.9
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCccccc-CCchhhhhhhhcCCCccchhhHHHHHHHHHHHHHHcCC
Q 002940 186 LSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSA-FPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADN 264 (863)
Q Consensus 186 Lsala~~ya~TgD~~lk~k~~~~Vd~L~~~Q~~~~dGYlga-~p~~~~~r~~~l~~~W~pyYt~HKI~aGLld~Y~~tGn 264 (863)
+++.+.+| ..+|.++ +++.++.+...|. ++|.+.. .|... ....-.|-|..+-|+. +.++|+.+||
T Consensus 156 ~~~~~~~~-~~~~~~l---~~~~l~~~~~~q~--~~G~~p~~~P~~~------~~~~~~~~w~l~~i~~-~~~~y~~tGD 222 (509)
T PF05592_consen 156 VSALTAYY-SFGDAAL---YRKWLRDFADSQR--PDGLLPSVAPSYG------GGGFGIPDWSLAWIII-PWDYYLYTGD 222 (509)
T ss_dssp HHHHHHHC-CT--HHH---HHHHHHHHHGGTT--TSTT-SSBSS---------SSGGGBHHHHHHHHHH-HHHHHHHHT-
T ss_pred HHHHHHHH-hCCcHHH---HHHHHHHHHHhhc--ccCCceEEecccC------CCCCCCccHHHHHHHH-HHHHHHHhCC
Confidence 44444443 4466554 4556667778898 8888754 33311 0111224444443554 6699999999
Q ss_pred HhHH----HHHHHHHHHHHHHhhh---hhccchhhhhhc---ccccccc----------chHHHHHHHHHhcCCH----H
Q 002940 265 AEAL----RMTTWMVEYFYNRVQN---VIKKYSIERHWQ---TLNEEAG----------GMNDVLYKLFCITQDP----K 320 (863)
Q Consensus 265 ~~AL----~va~~~ad~~~~r~~~---~~~~~~~~~~~~---~l~~E~G----------Gmne~L~~LY~~TGd~----r 320 (863)
.+.+ +.+++..+|+..+..+ .+..+..-.|.. ......+ .....+.+|.+..|++ +
T Consensus 223 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DW~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~ 302 (509)
T PF05592_consen 223 REFLEEYYPAMKRYLDYLERRVDDGLDGLPGWGFGDWLAPGNDGDGPTPGATITNALYYYALRAAAELAEALGKDEDAAE 302 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTB-TSSB-CCSB--S-SS----TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccCCCCCceeecCCccCcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7644 4567777777655443 111111112210 0001001 1124567888889984 7
Q ss_pred HHHHHhhcc---cccccch
Q 002940 321 HLMLAHLFD---KPCFLGL 336 (863)
Q Consensus 321 yL~lA~~f~---~~~~~~~ 336 (863)
|.+.|+.+. +..|+++
T Consensus 303 y~~~a~~lk~a~~~~~~d~ 321 (509)
T PF05592_consen 303 YRARAERLKAAINRHFWDP 321 (509)
T ss_dssp HHHHHHHHHHHHHHHCEET
T ss_pred HHHHHHHHHHHHHHhccCc
Confidence 888888764 3345544
No 73
>KOG0602 consensus Neutral trehalase [Carbohydrate transport and metabolism]
Probab=25.70 E-value=1e+02 Score=37.56 Aligned_cols=105 Identities=22% Similarity=0.354 Sum_probs=68.1
Q ss_pred CCCCCCCcCccCcccchHHHHHHHHHHhcCcHHHHH-HHHHHHHHHHHHHHhcCCcccccCCchhhh---hhhhcCCCcc
Q 002940 168 GGWEEPSCELRGHFVGHYLSASALMWASTHNESLKE-KMSAVVSALSACQKEIGSGYLSAFPTEQFD---RLEALIPVWA 243 (863)
Q Consensus 168 gGWE~~~~~l~Gh~~GhyLsala~~ya~TgD~~lk~-k~~~~Vd~L~~~Q~~~~dGYlga~p~~~~~---r~~~l~~~W~ 243 (863)
|-|+.=++.+..|....|.|.+|=+|+..-++.=.+ .++.+++.+++.= --.|-+..|...-. .| +.-+.|+
T Consensus 407 g~w~DYd~~~~~~~~~~~~sn~~Pl~~~~~~~~~~~~~~~~v~~~le~~g---~~~~p~giP~Sl~~s~eQW-D~Pn~Wa 482 (600)
T KOG0602|consen 407 GAWFDYDLELKKHNTYFYASNFAPLWAGCYPAPDDDKSVDKVLDYLEKSG---ALTFPGGIPTSLSNSGEQW-DFPNGWA 482 (600)
T ss_pred CcceeccccccccCCCcCchhhhhhhccCCCcccccchHHHHHHHHHHcC---CcCCCCCCcccCCCchhhc-cCCCCCC
Confidence 568888888899999999999999888766533333 3444555554221 13333444432111 11 1447899
Q ss_pred chhhHHHHHHHHHHHHHHcCCHhHHHHHHHHHH-HHHHHh
Q 002940 244 PYYTIHKILAGLLDQYTYADNAEALRMTTWMVE-YFYNRV 282 (863)
Q Consensus 244 pyYt~HKI~aGLld~Y~~tGn~~AL~va~~~ad-~~~~r~ 282 (863)
| +-|++..|| ..+|++++.++|.++|. |+...+
T Consensus 483 P--~q~m~~~gl----~~~~~~~~~~~A~kla~~wl~~~~ 516 (600)
T KOG0602|consen 483 P--NQHMAIEGL----RRAGNQELQEVALKLAQRWLETNF 516 (600)
T ss_pred c--ceehhhhhh----hhcCCHHHHHHHHHHHHHHHHHhh
Confidence 9 567788888 56799999999999884 444433
No 74
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=23.70 E-value=55 Score=31.83 Aligned_cols=25 Identities=16% Similarity=0.386 Sum_probs=17.5
Q ss_pred cccchhhHHHHHHHHHHHHhhhccc
Q 002940 3 KWMCSIGFFKFLLTFLLIVSAAQAK 27 (863)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (863)
||...++|++++|++|++|.|...|
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~rR 25 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHNRR 25 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 6888777777777777777665443
No 75
>cd00100 IL1 Interleukin-1 homologes; Cytokines with various biological functions. Interleukin 1 alpha and beta are also known as hematopoietin and catabolin. This family also contains interleukin-1 receptor antagonists (inhibitors).
Probab=23.48 E-value=48 Score=33.21 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=20.8
Q ss_pred CeEEEeecCCcceEEEEeeccCCCCcEEEE
Q 002940 774 RTVSLESETYKGCFVYTAVNLQSSESTKLG 803 (863)
Q Consensus 774 g~vSles~~~pg~~~~~~~~~~~g~~~~l~ 803 (863)
.+.+|||+.+||||+-.. ......|.|.
T Consensus 103 ~~~~FeSaa~PgWfIsTs--~~~~~PV~l~ 130 (144)
T cd00100 103 NKNYFESAAFPNWFIATK--QEEDKPVFLA 130 (144)
T ss_pred CceEEEEccCCCcEEEec--ccCCeEEEee
Confidence 389999999999999753 1234566665
No 76
>PF00340 IL1: Interleukin-1 / 18; InterPro: IPR000975 Interleukin-1 alpha and interleukin-1 beta (IL-1 alpha and IL-1 beta) are cytokines that participate in the regulation of immune responses, inflammatory reactions, and hematopoiesis []. Two types of IL-1 receptor, each with three extracellular immunoglobulin (Ig)-like domains, limited sequence similarity (28%) and different pharmacological characteristics have been cloned from mouse and human cell lines: these have been termed type I and type II receptors []. The receptors both exist in transmembrane (TM) and soluble forms: the soluble IL-1 receptor is thought to be post-translationally derived from cleavage of the extracellular portion of the membrane receptors. Both IL-1 receptors appear to be well conserved in evolution, and map to the same chromosomal location []. The receptors can both bind all three forms of IL-1 (IL-1 alpha, IL-1 beta and IL-1RA). The crystal structures of IL1A and IL1B [] have been solved, showing them to share the same 12-stranded beta-sheet structure as both the heparin binding growth factors and the Kunitz-type soybean trypsin inhibitors []. The beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel. Several regions, especially the loop between strands 4 and 5, have been implicated in receptor binding. The Vaccinia virus genes B15R and B18R each encode proteins with N-terminal hydrophobic sequences, possible sites for attachment of N-linked carbohydrate and a short C-terminal hydrophobic domain []. These properties are consistent with the mature proteins being either virion, cell surface or secretory glycoproteins. Protein sequence comparisons reveal that the gene products are related to each other (20% identity) and to the Ig superfamily. The highest degree of similarity is to the human and murine interleukin-1 receptors, although both proteins are related to a wide range of Ig superfamily members, including the interleukin-6 receptor. A novel method for virus immune evasion has been proposed in which the product of one or both of these proteins may bind interleukin-1 and/or interleukin-6, preventing these cytokines reaching their natural receptors []. A similar gene product from Cowpox virus (CPV) has also been shown to specifically bind murine IL-1 beta []. This entry represents Interleukin-1. ; GO: 0005615 extracellular space; PDB: 1J0S_A 3F62_B 2VXT_I 1MD6_A 2KKI_A 2L5X_D 2WRY_A 3NJ5_A 8I1B_A 2MIB_A ....
Probab=22.87 E-value=64 Score=31.17 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=20.5
Q ss_pred eEEEeecCCcceEEEEeeccCCCCcEEEEe
Q 002940 775 TVSLESETYKGCFVYTAVNLQSSESTKLGC 804 (863)
Q Consensus 775 ~vSles~~~pg~~~~~~~~~~~g~~~~l~~ 804 (863)
+-+|||+.+|||||... ...+..|.|.+
T Consensus 80 ~~~FESaa~PgwFIaT~--~~~~~pv~l~~ 107 (120)
T PF00340_consen 80 TSTFESAAYPGWFIATS--PEDNQPVELTK 107 (120)
T ss_dssp EEEEEESSSTTEEEEBE--SSSTEEEEEES
T ss_pred ceEEEEccCCCeEEEec--ccCCceEEEEe
Confidence 44599999999999754 23455677764
No 77
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=22.83 E-value=1.5e+02 Score=28.95 Aligned_cols=32 Identities=28% Similarity=0.493 Sum_probs=21.9
Q ss_pred EEEEeccCCccCCCcEEEECCeecCCCCCCCEEEEEeecCCCCEEEEEecce
Q 002940 557 SLNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLT 608 (863)
Q Consensus 557 tL~LRIP~Wa~~~~~~v~VNG~~~~~~~~ggy~~I~R~Wk~GD~I~L~LPm~ 608 (863)
+...=||.|+. ++||..|+|+ .|+++|.-+..
T Consensus 20 ~~~~~ip~wa~-----------------~~~F~sIt~t---~eelsivc~~~ 51 (128)
T COG3603 20 DAGSAIPAWAD-----------------GPGFWSITRT---PEELSIVCLAD 51 (128)
T ss_pred ccCCcCccccC-----------------CCceEEEEcC---CceEEEEeecc
Confidence 34456899987 4789999976 46666655544
No 78
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=22.67 E-value=49 Score=36.86 Aligned_cols=51 Identities=22% Similarity=0.340 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhcccccchHHHHHHHHHhhhcccccCCCCCCcEEEeccCCCC
Q 002940 409 TTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPG 462 (863)
Q Consensus 409 at~nmlkl~~~L~~~tgD~~YaD~~ERalyN~iLa~q~~~~~g~~~Y~~PL~~g 462 (863)
+|+.-|.+.-++++.++|.+|-+..+|.+ +-||.+|+| .+|=..| -|+..+
T Consensus 40 aT~~ei~fLa~~y~~t~d~~y~~A~~kgl-~ylL~aQyp-nGGWPQ~-yP~~~~ 90 (289)
T PF09492_consen 40 ATTTEIRFLARVYQATKDPRYREAFLKGL-DYLLKAQYP-NGGWPQF-YPLRGG 90 (289)
T ss_dssp TTHHHHHHHHHHHHHCG-HHHHHHHHHHH-HHHHHHS-T-TS--BSE-CS--SG
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHHHH-HHHHHhhCC-CCCCCcc-CCCCCC
Confidence 45666777777899999999999999998 999999997 6664443 355433
No 79
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=22.34 E-value=1.8e+02 Score=27.06 Aligned_cols=54 Identities=17% Similarity=0.343 Sum_probs=31.7
Q ss_pred EEEECCeecCCCCCCCEEEEEeecCCCCEEEEEec-ceeEEEe--cCCCccccCCeEEEeecceeee
Q 002940 572 KATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLP-LTLRTEA--IQDDRPEYASIQAILYGPYVLA 635 (863)
Q Consensus 572 ~v~VNG~~~~~~~~ggy~~I~R~Wk~GD~I~L~LP-m~lr~~~--~~d~~~~~~~~vAv~rGPlVlA 635 (863)
.++|||+... ..++..+.++ +||.|+|+-. -..|+.= -.+-.+ --+.|||+|+.
T Consensus 30 ~~~v~~~~~~-~~~~~~~~l~----~g~~i~~~a~~~~a~~lll~GePl~E-----pi~~~GpFVmn 86 (104)
T PF05726_consen 30 SVEVGGEEDP-LEAGQLVVLE----DGDEIELTAGEEGARFLLLGGEPLNE-----PIVQYGPFVMN 86 (104)
T ss_dssp EEEETTTTEE-EETTEEEEE-----SECEEEEEESSSSEEEEEEEE----S-------EEETTEEES
T ss_pred cEEECCCcce-ECCCcEEEEC----CCceEEEEECCCCcEEEEEEccCCCC-----CEEEECCcccC
Confidence 3566666411 1256677776 8899999998 6666632 222111 24789999986
No 80
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=22.09 E-value=5.3e+02 Score=22.45 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=17.6
Q ss_pred eeeEEEEeccCCccCCCcEEEECCeecCCC
Q 002940 554 LTTSLNLRIPTWTSSNGAKATLNGQDLPLP 583 (863)
Q Consensus 554 ~~ftL~LRIP~Wa~~~~~~v~VNG~~~~~~ 583 (863)
.++.|.+--|+ ..+|++||+++...
T Consensus 38 ~~~~i~iGna~-----~v~v~~nG~~~~~~ 62 (77)
T PF13464_consen 38 EPFRIRIGNAG-----AVEVTVNGKPVDLL 62 (77)
T ss_pred CCEEEEEeCCC-----cEEEEECCEECCCC
Confidence 44555554443 68999999999863
No 81
>smart00125 IL1 Interleukin-1 homologues. Cytokines with various biological functions. Interluekin 1 alpha and beta are also known as hematopoietin and catabolin.
Probab=21.33 E-value=58 Score=32.78 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=20.5
Q ss_pred CeEEEeecCCcceEEEEeeccCCCCcEEEE
Q 002940 774 RTVSLESETYKGCFVYTAVNLQSSESTKLG 803 (863)
Q Consensus 774 g~vSles~~~pg~~~~~~~~~~~g~~~~l~ 803 (863)
.+.+|||+.+||||+.... .....|.|.
T Consensus 106 ~~~~FeSaa~PgWfIsTs~--~~~~PV~l~ 133 (147)
T smart00125 106 NKVEFESAAHPNWFISTSQ--EEDKPVFLG 133 (147)
T ss_pred CceEEEEccCCCcEEEecc--ccCceEEee
Confidence 4889999999999997531 234446665
No 82
>PHA02811 putative host range protein; Provisional
Probab=21.30 E-value=1.3e+02 Score=31.31 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=28.3
Q ss_pred EEEEEEEeCCCCeeeEEEEeccCCcc--C-CCcEEEECCeecCCC
Q 002940 542 RVTLTFSSKGSGLTTSLNLRIPTWTS--S-NGAKATLNGQDLPLP 583 (863)
Q Consensus 542 ~VtltV~~~~~~~~ftL~LRIP~Wa~--~-~~~~v~VNG~~~~~~ 583 (863)
.+.|.++.. +...|-+-|| |.|.. . ...++++||.++...
T Consensus 32 ~I~Lk~~~~-Kk~~~i~Il~-PdWseI~evKPI~m~~Ng~~vdv~ 74 (197)
T PHA02811 32 TINIKVNQQ-KKLDFIIILR-PDWTEVRNVKKINMVCNGVVIDTT 74 (197)
T ss_pred EEEEEeCCc-cEEEEEEEec-cchhhhhhccceEEEECCcEeEEE
Confidence 566666654 4566778888 99943 1 168899999988754
No 83
>PF08547 CIA30: Complex I intermediate-associated protein 30 (CIA30); InterPro: IPR013857 Mitochondrial complex I intermediate-associated protein 30 (CIA30) is present in human and mouse, and also in Schizosaccharomyces pombe (Fission yeast) which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits. This means it is possible that it is not directly involved in oxidative phosphorylation [, ].
Probab=21.19 E-value=4e+02 Score=26.49 Aligned_cols=53 Identities=21% Similarity=0.381 Sum_probs=37.2
Q ss_pred Cccccccccc--eecccCCCccCCceEEEecCCCcchhccccc--ccccceEEEEec
Q 002940 809 TEAGFNNAAS--FVIEKGLSEYHPISFVAKGANRNFLLAPLLS--LRDESYTVYFDF 861 (863)
Q Consensus 809 ~~~~f~~~as--F~~~~gl~~y~piSf~a~g~~~~~ll~pl~~--~~~~~~~~~~~~ 861 (863)
...+|+..-+ +....-|+.|..|++.++|+.|.|.+.=--. .....|...|..
T Consensus 47 ~~~GFa~~r~~~~~~~~dls~y~~l~l~vrgdGr~Y~~~l~~~~~~~~~~y~~~f~t 103 (157)
T PF08547_consen 47 NNGGFASVRTPSFPSPLDLSGYDGLELRVRGDGRTYKVNLRTDNDEPSDSYQARFQT 103 (157)
T ss_pred CCCceEEEEEccCCCcCCCCCCcEEEEEEEcCCceEEEEEEeCCCCCCceEEEEEec
Confidence 4456766555 6778889999999999999999987642221 334466666654
No 84
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=20.97 E-value=4.7e+02 Score=23.52 Aligned_cols=21 Identities=19% Similarity=0.567 Sum_probs=16.7
Q ss_pred eEEEEeccCCccCCCcEEEECCeecC
Q 002940 556 TSLNLRIPTWTSSNGAKATLNGQDLP 581 (863)
Q Consensus 556 ftL~LRIP~Wa~~~~~~v~VNG~~~~ 581 (863)
-+|.|.+| . +++|.|||++..
T Consensus 3 a~itv~vP---a--dAkl~v~G~~t~ 23 (75)
T TIGR03000 3 ATITVTLP---A--DAKLKVDGKETN 23 (75)
T ss_pred eEEEEEeC---C--CCEEEECCeEcc
Confidence 36888888 2 689999999765
No 85
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=20.39 E-value=92 Score=32.86 Aligned_cols=47 Identities=23% Similarity=0.445 Sum_probs=33.9
Q ss_pred EEeccCCccCC-------CcEEEECCeecCCCCCCCEEEE-EeecCCCCEEEEEecceeEEE
Q 002940 559 NLRIPTWTSSN-------GAKATLNGQDLPLPSPGNFLSV-TKTWSSDDKLTIQLPLTLRTE 612 (863)
Q Consensus 559 ~LRIP~Wa~~~-------~~~v~VNG~~~~~~~~ggy~~I-~R~Wk~GD~I~L~LPm~lr~~ 612 (863)
.+|||+|-.++ -+.++|||. .|.+.+ +|+-.+.|.|++-=|+.+|-+
T Consensus 145 gi~Iegf~~~~RtfG~v~~yp~~Ingi-------~gaiV~P~rT~h~~dviEIIapv~LR~~ 199 (214)
T COG1339 145 GIRIEGFKTEDRTFGGVKAYPCKINGI-------EGAIVIPERTHHPTDVIEIIAPVKLRDE 199 (214)
T ss_pred CEeeCCCCCCCceeccEEEEEEEEcCc-------ceEEEeeccccCCcceEEEEccHhHHHH
Confidence 48899997532 255788882 234444 588888999999999998853
Done!