Query 002941
Match_columns 863
No_of_seqs 400 out of 3985
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 13:50:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002941.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002941hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02974 adenosylmethionine-8- 100.0 4E-128 9E-133 1158.7 76.1 796 26-850 16-816 (817)
2 COG0161 BioA Adenosylmethionin 100.0 1.4E-90 3.1E-95 771.3 41.3 436 357-854 9-445 (449)
3 COG4992 ArgD Ornithine/acetylo 100.0 3.3E-81 7.2E-86 681.5 40.9 376 376-855 25-401 (404)
4 COG0160 GabT 4-aminobutyrate a 100.0 5.1E-81 1.1E-85 699.4 43.2 405 376-853 39-446 (447)
5 PRK07482 hypothetical protein; 100.0 1.5E-76 3.3E-81 683.3 46.7 441 351-853 6-455 (461)
6 PRK07481 hypothetical protein; 100.0 2.7E-76 5.9E-81 679.4 47.0 438 355-853 4-446 (449)
7 PRK08742 adenosylmethionine--8 100.0 8.1E-76 1.8E-80 677.0 46.7 439 353-854 23-469 (472)
8 KOG1404 Alanine-glyoxylate ami 100.0 4.4E-77 9.6E-82 634.3 33.2 397 375-846 32-432 (442)
9 PRK05965 hypothetical protein; 100.0 6.4E-76 1.4E-80 677.7 45.4 438 353-854 6-449 (459)
10 PRK06943 adenosylmethionine--8 100.0 4.1E-75 8.9E-80 669.5 46.1 434 353-853 14-447 (453)
11 PLN02760 4-aminobutyrate:pyruv 100.0 1.7E-74 3.8E-79 670.3 47.4 441 360-862 56-501 (504)
12 PRK07030 adenosylmethionine--8 100.0 3E-74 6.6E-79 664.0 46.5 436 354-853 8-447 (466)
13 PRK07678 aminotransferase; Val 100.0 2.9E-74 6.4E-79 662.9 45.5 434 352-853 9-450 (451)
14 PRK07036 hypothetical protein; 100.0 5.9E-74 1.3E-78 662.1 47.9 439 352-854 10-454 (466)
15 PRK07480 putative aminotransfe 100.0 1E-73 2.2E-78 658.5 45.5 437 353-855 10-451 (456)
16 PRK06916 adenosylmethionine--8 100.0 1.5E-73 3.3E-78 658.2 45.2 439 353-855 16-458 (460)
17 PRK06105 aminotransferase; Pro 100.0 2.8E-73 6.1E-78 655.9 47.3 440 353-855 8-452 (460)
18 PRK12403 putative aminotransfe 100.0 1.7E-72 3.7E-77 649.4 47.3 435 354-854 15-454 (460)
19 PRK06062 hypothetical protein; 100.0 1E-72 2.2E-77 649.7 45.2 424 355-855 18-448 (451)
20 PRK07483 hypothetical protein; 100.0 1.9E-72 4.1E-77 646.1 45.8 416 376-855 13-440 (443)
21 PRK06173 adenosylmethionine--8 100.0 9E-72 1.9E-76 637.7 44.7 418 355-853 8-426 (429)
22 PRK06541 hypothetical protein; 100.0 2.6E-71 5.6E-76 639.2 47.4 438 352-854 11-457 (460)
23 PRK05630 adenosylmethionine--8 100.0 3.8E-71 8.3E-76 631.7 44.6 415 354-852 5-420 (422)
24 PRK07986 adenosylmethionine--8 100.0 4E-71 8.6E-76 631.7 44.4 415 356-852 8-423 (428)
25 PRK06917 hypothetical protein; 100.0 2E-70 4.4E-75 630.0 46.7 412 378-854 16-439 (447)
26 PRK09221 beta alanine--pyruvat 100.0 2.6E-70 5.6E-75 628.8 45.4 428 358-853 15-444 (445)
27 PRK13360 omega amino acid--pyr 100.0 4.8E-70 1E-74 626.1 45.7 429 358-853 12-441 (442)
28 PRK06938 diaminobutyrate--2-ox 100.0 8.7E-70 1.9E-74 626.7 43.5 404 376-853 46-461 (464)
29 TIGR03372 putres_am_tran putre 100.0 9.8E-70 2.1E-74 621.1 42.0 375 384-850 64-442 (442)
30 PRK11522 putrescine--2-oxoglut 100.0 1.3E-69 2.8E-74 623.9 42.9 388 376-857 64-456 (459)
31 PRK06082 4-aminobutyrate amino 100.0 9E-69 2E-73 617.9 44.7 411 359-855 43-454 (459)
32 PRK06931 diaminobutyrate--2-ox 100.0 9E-69 2E-73 617.9 43.8 405 376-854 41-456 (459)
33 PRK05639 4-aminobutyrate amino 100.0 1.1E-68 2.4E-73 616.4 43.6 406 376-854 36-445 (457)
34 PRK06058 4-aminobutyrate amino 100.0 3.8E-68 8.2E-73 611.9 43.8 401 376-853 39-443 (443)
35 PRK08593 4-aminobutyrate amino 100.0 1.2E-67 2.5E-72 607.2 44.6 406 376-855 25-432 (445)
36 PRK05964 adenosylmethionine--8 100.0 1.3E-67 2.9E-72 604.7 44.6 420 353-853 4-423 (423)
37 TIGR00709 dat 2,4-diaminobutyr 100.0 5.3E-67 1.1E-71 602.0 43.9 404 376-853 22-436 (442)
38 PRK05769 4-aminobutyrate amino 100.0 2.7E-66 5.7E-71 595.3 44.4 402 376-853 37-440 (441)
39 PRK07495 4-aminobutyrate amino 100.0 3.2E-66 7E-71 592.0 43.9 397 376-854 23-423 (425)
40 KOG1402 Ornithine aminotransfe 100.0 3.3E-67 7.2E-72 545.9 31.8 381 376-851 42-426 (427)
41 KOG1401 Acetylornithine aminot 100.0 1E-66 2.3E-71 559.5 35.2 400 360-854 23-432 (433)
42 PRK06148 hypothetical protein; 100.0 2.1E-65 4.6E-70 636.4 44.2 401 376-853 607-1011(1013)
43 PRK08360 4-aminobutyrate amino 100.0 5.6E-64 1.2E-68 576.1 46.2 403 376-854 24-428 (443)
44 PRK06777 4-aminobutyrate amino 100.0 3.5E-64 7.5E-69 575.5 43.6 394 376-851 23-420 (421)
45 PRK09792 4-aminobutyrate trans 100.0 4.3E-64 9.3E-69 574.7 44.1 394 376-851 23-420 (421)
46 PRK08117 4-aminobutyrate amino 100.0 6.2E-64 1.3E-68 576.1 44.8 400 377-853 27-430 (433)
47 TIGR00508 bioA adenosylmethion 100.0 6E-64 1.3E-68 573.9 44.2 418 354-852 8-426 (427)
48 TIGR00700 GABAtrnsam 4-aminobu 100.0 1E-63 2.3E-68 572.0 44.2 400 376-851 16-419 (420)
49 PRK06918 4-aminobutyrate amino 100.0 1.3E-63 2.9E-68 575.6 44.9 405 376-854 37-445 (451)
50 PRK08297 L-lysine aminotransfe 100.0 1.2E-63 2.5E-68 573.5 42.3 400 379-853 30-442 (443)
51 PRK04612 argD acetylornithine 100.0 1.6E-63 3.4E-68 567.1 42.7 382 376-854 23-405 (408)
52 PRK04013 argD acetylornithine/ 100.0 7.2E-64 1.6E-68 560.3 39.0 354 376-853 7-361 (364)
53 TIGR00699 GABAtrns_euk 4-amino 100.0 8.3E-64 1.8E-68 573.3 40.4 400 376-850 41-464 (464)
54 PRK12389 glutamate-1-semialdeh 100.0 2.5E-63 5.3E-68 569.6 43.3 385 376-852 36-427 (428)
55 TIGR02407 ectoine_ectB diamino 100.0 2.4E-63 5.2E-68 567.1 40.0 386 376-852 18-412 (412)
56 PRK09264 diaminobutyrate--2-ox 100.0 4.5E-63 9.7E-68 567.2 40.6 391 376-857 22-421 (425)
57 PRK06149 hypothetical protein; 100.0 8E-63 1.7E-67 613.4 44.8 399 376-852 568-970 (972)
58 PRK03715 argD acetylornithine 100.0 1.3E-62 2.8E-67 557.9 39.5 372 376-853 19-394 (395)
59 PRK07046 aminotransferase; Val 100.0 1.7E-61 3.8E-66 556.1 45.5 427 333-854 13-452 (453)
60 PLN00144 acetylornithine trans 100.0 7.3E-62 1.6E-66 549.8 39.7 377 383-853 3-381 (382)
61 TIGR03246 arg_catab_astC succi 100.0 1.5E-61 3.1E-66 550.6 42.3 378 376-853 18-396 (397)
62 PF00202 Aminotran_3: Aminotra 100.0 1.1E-62 2.5E-67 547.7 29.4 338 379-793 2-339 (339)
63 PLN02482 glutamate-1-semialdeh 100.0 1.5E-60 3.2E-65 549.5 43.3 383 376-853 82-474 (474)
64 TIGR03251 LAT_fam L-lysine 6-t 100.0 8.8E-61 1.9E-65 548.7 40.6 395 383-848 25-430 (431)
65 PRK00615 glutamate-1-semialdeh 100.0 5.4E-60 1.2E-64 540.4 42.8 385 376-854 36-430 (433)
66 PRK12381 bifunctional succinyl 100.0 6.4E-60 1.4E-64 538.7 42.4 379 376-854 22-401 (406)
67 COG0001 HemL Glutamate-1-semia 100.0 1.5E-59 3.2E-64 516.9 38.7 411 350-854 7-430 (432)
68 PLN02624 ornithine-delta-amino 100.0 1.1E-58 2.3E-63 537.0 44.4 384 376-852 58-444 (474)
69 KOG1403 Predicted alanine-glyo 100.0 5.1E-58 1.1E-62 471.1 28.0 407 374-854 28-439 (452)
70 PRK04073 rocD ornithine--oxo-a 100.0 1.8E-56 4E-61 508.8 40.7 371 376-850 23-395 (396)
71 PRK01278 argD acetylornithine 100.0 1.1E-55 2.5E-60 501.0 41.3 373 376-852 14-388 (389)
72 PRK08088 4-aminobutyrate amino 100.0 1.1E-54 2.4E-59 498.3 43.6 398 376-853 24-424 (425)
73 TIGR00713 hemL glutamate-1-sem 100.0 2.4E-54 5.1E-59 495.6 41.9 387 376-853 31-423 (423)
74 PRK00062 glutamate-1-semialdeh 100.0 3E-54 6.5E-59 494.6 41.4 387 376-853 33-425 (426)
75 TIGR01885 Orn_aminotrans ornit 100.0 9.5E-54 2.1E-58 487.3 41.0 379 376-850 20-400 (401)
76 PRK06209 glutamate-1-semialdeh 100.0 1.1E-53 2.3E-58 490.1 41.6 377 375-856 30-409 (431)
77 PRK05093 argD bifunctional N-s 100.0 2.8E-53 6.1E-58 483.7 42.3 378 376-853 23-401 (403)
78 PRK03244 argD acetylornithine 100.0 1.4E-52 2.9E-57 477.2 40.3 371 375-854 25-396 (398)
79 PRK02936 argD acetylornithine 100.0 4.5E-52 9.8E-57 469.4 40.5 365 376-850 12-377 (377)
80 PRK00854 rocD ornithine--oxo-a 100.0 1.7E-51 3.8E-56 468.5 41.5 375 376-851 24-400 (401)
81 PTZ00125 ornithine aminotransf 100.0 1E-50 2.3E-55 461.7 42.8 382 376-854 14-397 (400)
82 PRK04260 acetylornithine amino 100.0 3.5E-49 7.6E-54 445.8 40.7 363 376-850 12-375 (375)
83 cd00610 OAT_like Acetyl ornith 100.0 1.1E-48 2.3E-53 446.4 43.1 410 355-850 3-413 (413)
84 PRK02627 acetylornithine amino 100.0 6.7E-49 1.5E-53 446.0 40.9 373 376-853 22-395 (396)
85 KOG1405 4-aminobutyrate aminot 100.0 1.2E-43 2.6E-48 372.4 27.9 399 384-852 65-483 (484)
86 TIGR00707 argD acetylornithine 100.0 2.2E-40 4.8E-45 373.9 38.9 369 376-850 10-379 (379)
87 COG0132 BioD Dethiobiotin synt 100.0 4.5E-38 9.7E-43 324.3 19.7 196 37-316 2-207 (223)
88 PRK07505 hypothetical protein; 100.0 1.1E-33 2.4E-38 322.5 33.2 345 378-852 31-399 (402)
89 PF13500 AAA_26: AAA domain; P 100.0 1.5E-34 3.3E-39 298.3 16.2 196 38-319 1-198 (199)
90 PRK13393 5-aminolevulinate syn 100.0 1.2E-30 2.6E-35 298.0 31.6 331 400-854 46-398 (406)
91 PLN02822 serine palmitoyltrans 100.0 3E-30 6.6E-35 299.8 34.4 355 378-853 95-478 (481)
92 PRK12374 putative dithiobiotin 100.0 2.5E-30 5.5E-35 273.1 21.8 208 37-326 2-216 (231)
93 TIGR01821 5aminolev_synth 5-am 100.0 7.4E-29 1.6E-33 282.8 33.5 330 400-853 46-397 (402)
94 PRK09064 5-aminolevulinate syn 100.0 1.6E-28 3.4E-33 280.5 33.0 330 400-853 47-398 (407)
95 PRK00090 bioD dithiobiotin syn 100.0 4.9E-29 1.1E-33 261.6 22.3 202 39-324 1-213 (222)
96 PLN03227 serine palmitoyltrans 100.0 5.2E-28 1.1E-32 274.8 30.7 346 403-854 2-384 (392)
97 PLN02955 8-amino-7-oxononanoat 100.0 2E-27 4.4E-32 270.6 32.2 338 400-854 103-463 (476)
98 COG0156 BioF 7-keto-8-aminopel 100.0 1.2E-27 2.6E-32 266.9 29.3 326 400-849 40-387 (388)
99 PRK07179 hypothetical protein; 99.9 2.7E-25 5.8E-30 254.0 30.2 331 382-853 49-399 (407)
100 PRK05958 8-amino-7-oxononanoat 99.9 2.3E-24 5E-29 243.4 33.8 342 377-850 24-385 (385)
101 PRK00784 cobyric acid synthase 99.9 6.9E-26 1.5E-30 263.6 17.3 198 37-319 2-233 (488)
102 TIGR01825 gly_Cac_T_rel pyrido 99.9 1.5E-23 3.3E-28 237.3 34.7 346 377-853 18-382 (385)
103 PRK13392 5-aminolevulinate syn 99.9 8.4E-24 1.8E-28 241.9 31.4 332 400-853 47-398 (410)
104 PRK05937 8-amino-7-oxononanoat 99.9 2.5E-22 5.4E-27 226.8 31.5 328 400-854 5-352 (370)
105 KOG1359 Glycine C-acetyltransf 99.9 8.2E-23 1.8E-27 211.3 24.6 344 377-853 50-413 (417)
106 TIGR00347 bioD dethiobiotin sy 99.9 2.7E-23 5.8E-28 208.2 18.1 165 41-287 1-166 (166)
107 PRK06939 2-amino-3-ketobutyrat 99.9 4.4E-21 9.6E-26 217.7 35.2 345 384-853 31-394 (397)
108 PRK06278 cobyrinic acid a,c-di 99.9 7.1E-23 1.5E-27 234.5 19.6 172 36-312 237-418 (476)
109 TIGR00858 bioF 8-amino-7-oxono 99.9 4.4E-21 9.5E-26 214.3 33.1 335 384-847 6-360 (360)
110 TIGR00313 cobQ cobyric acid sy 99.9 4.5E-23 9.7E-28 238.6 15.9 207 40-316 1-227 (475)
111 TIGR01822 2am3keto_CoA 2-amino 99.9 1.7E-20 3.8E-25 213.0 33.6 345 384-853 27-390 (393)
112 PRK13896 cobyrinic acid a,c-di 99.9 3.4E-22 7.4E-27 226.7 18.3 174 37-319 1-181 (433)
113 PLN02483 serine palmitoyltrans 99.9 8.6E-20 1.9E-24 212.9 37.6 353 376-853 79-467 (489)
114 COG1797 CobB Cobyrinic acid a, 99.9 4.9E-22 1.1E-26 218.6 14.7 176 38-319 1-185 (451)
115 KOG1360 5-aminolevulinate synt 99.9 2.7E-20 5.7E-25 199.4 23.2 320 414-854 183-526 (570)
116 TIGR00379 cobB cobyrinic acid 99.9 3.2E-21 6.8E-26 222.3 17.5 174 39-319 1-184 (449)
117 PRK01077 cobyrinic acid a,c-di 99.9 4.4E-21 9.6E-26 221.5 17.7 178 36-319 2-187 (451)
118 cd03109 DTBS Dethiobiotin synt 99.9 1.1E-20 2.4E-25 182.8 15.7 88 222-311 40-134 (134)
119 cd06454 KBL_like KBL_like; thi 99.8 9.8E-19 2.1E-23 194.9 30.7 329 400-849 2-348 (349)
120 PRK05632 phosphate acetyltrans 99.8 5E-20 1.1E-24 222.4 18.4 178 37-323 2-206 (684)
121 cd00613 GDC-P Glycine cleavage 99.8 5.8E-18 1.3E-22 192.6 27.4 337 406-846 23-398 (398)
122 COG1492 CobQ Cobyric acid synt 99.8 1.5E-19 3.2E-24 202.8 8.2 218 37-316 1-230 (486)
123 TIGR03576 pyridox_MJ0158 pyrid 99.8 3.9E-17 8.5E-22 182.7 25.2 303 411-850 28-345 (346)
124 PRK03317 histidinol-phosphate 99.7 1.5E-15 3.2E-20 171.5 30.8 324 401-851 28-363 (368)
125 PRK06225 aspartate aminotransf 99.7 1.5E-15 3.2E-20 172.2 29.2 337 400-854 29-378 (380)
126 cd00609 AAT_like Aspartate ami 99.7 3.4E-15 7.3E-20 165.4 26.4 205 618-847 131-349 (350)
127 PRK03158 histidinol-phosphate 99.7 1.5E-14 3.3E-19 162.5 28.8 319 400-849 30-358 (359)
128 PRK13520 L-tyrosine decarboxyl 99.7 2.7E-14 6E-19 160.7 29.3 325 417-851 32-370 (371)
129 PRK08153 histidinol-phosphate 99.7 4.2E-14 9E-19 159.9 29.5 326 400-854 33-367 (369)
130 PLN02721 threonine aldolase 99.7 4.5E-14 9.8E-19 157.8 29.4 338 400-852 6-352 (353)
131 PRK02731 histidinol-phosphate 99.7 6.9E-14 1.5E-18 157.7 30.1 322 400-851 33-365 (367)
132 PRK06108 aspartate aminotransf 99.6 1.9E-13 4.1E-18 154.7 32.4 339 400-851 25-381 (382)
133 cd06502 TA_like Low-specificit 99.6 6.7E-14 1.5E-18 155.4 27.9 324 410-848 5-337 (338)
134 PRK07682 hypothetical protein; 99.6 8.6E-14 1.9E-18 157.6 27.6 326 418-853 35-377 (378)
135 PRK00950 histidinol-phosphate 99.6 1.5E-13 3.1E-18 154.6 28.4 316 400-850 35-360 (361)
136 PRK13034 serine hydroxymethylt 99.6 2.1E-13 4.5E-18 156.6 29.3 320 418-852 41-392 (416)
137 TIGR01141 hisC histidinol-phos 99.6 1.7E-13 3.7E-18 153.1 27.6 314 400-846 20-345 (346)
138 PRK09331 Sep-tRNA:Cys-tRNA syn 99.6 3.7E-13 8E-18 153.2 29.5 338 412-853 28-382 (387)
139 TIGR02539 SepCysS Sep-tRNA:Cys 99.6 1.3E-13 2.8E-18 156.0 25.3 329 421-852 20-368 (370)
140 TIGR03301 PhnW-AepZ 2-aminoeth 99.6 5.3E-13 1.2E-17 149.0 28.3 305 443-850 31-355 (355)
141 TIGR03402 FeS_nifS cysteine de 99.6 1.3E-12 2.8E-17 148.1 30.7 328 417-855 11-375 (379)
142 PRK05764 aspartate aminotransf 99.6 1.1E-12 2.3E-17 149.4 28.5 212 620-852 166-391 (393)
143 PRK01533 histidinol-phosphate 99.6 6E-13 1.3E-17 150.4 26.0 322 400-853 30-356 (366)
144 PRK07324 transaminase; Validat 99.6 5E-13 1.1E-17 151.4 25.3 203 622-852 157-370 (373)
145 PRK06207 aspartate aminotransf 99.6 4.4E-12 9.6E-17 145.3 32.9 345 400-853 40-403 (405)
146 cd06451 AGAT_like Alanine-glyo 99.6 9.2E-13 2E-17 147.7 26.7 210 619-850 124-355 (356)
147 PRK15481 transcriptional regul 99.6 4.5E-12 9.8E-17 146.3 33.0 201 621-851 214-430 (431)
148 COG0436 Aspartate/tyrosine/aro 99.6 3.1E-12 6.8E-17 145.5 31.0 328 417-852 42-391 (393)
149 COG0079 HisC Histidinol-phosph 99.5 3E-12 6.5E-17 143.5 29.5 319 400-852 23-354 (356)
150 PRK08960 hypothetical protein; 99.5 5.6E-12 1.2E-16 143.4 31.3 323 418-851 47-386 (387)
151 TIGR03392 FeS_syn_CsdA cystein 99.5 9.3E-12 2E-16 142.1 32.8 341 400-853 18-396 (398)
152 PRK10874 cysteine sulfinate de 99.5 1.1E-11 2.4E-16 141.6 33.1 342 400-853 21-399 (401)
153 TIGR01814 kynureninase kynuren 99.5 6.8E-12 1.5E-16 143.7 30.1 210 618-850 170-405 (406)
154 cd06453 SufS_like Cysteine des 99.5 7.5E-12 1.6E-16 141.2 29.5 324 417-846 11-373 (373)
155 PRK09105 putative aminotransfe 99.5 7.3E-12 1.6E-16 141.8 29.3 317 400-850 44-368 (370)
156 PRK08056 threonine-phosphate d 99.5 1E-11 2.2E-16 139.7 30.1 321 400-850 21-353 (356)
157 PLN00175 aminotransferase fami 99.5 1E-11 2.2E-16 142.7 30.5 208 620-851 188-412 (413)
158 COG0857 Pta BioD-like N-termin 99.5 6.6E-14 1.4E-18 154.8 12.0 193 37-320 2-210 (354)
159 TIGR01140 L_thr_O3P_dcar L-thr 99.5 4E-12 8.7E-17 141.6 26.3 191 621-846 128-329 (330)
160 KOG1357 Serine palmitoyltransf 99.5 2.4E-12 5.3E-17 141.3 23.8 357 372-851 111-501 (519)
161 PRK09148 aminotransferase; Val 99.5 1.3E-11 2.8E-16 141.4 30.3 215 618-856 165-394 (405)
162 PRK06358 threonine-phosphate d 99.5 2.2E-11 4.8E-16 136.9 31.6 321 400-850 20-353 (354)
163 PRK03321 putative aminotransfe 99.5 7.5E-12 1.6E-16 140.4 27.2 195 621-851 148-350 (352)
164 PRK14809 histidinol-phosphate 99.5 1.6E-11 3.4E-16 138.2 29.8 317 400-851 31-356 (357)
165 PRK07568 aspartate aminotransf 99.5 2.4E-11 5.2E-16 138.5 31.0 206 621-854 165-394 (397)
166 PRK09295 bifunctional cysteine 99.5 5.8E-11 1.3E-15 136.0 33.4 340 400-851 25-403 (406)
167 PRK07681 aspartate aminotransf 99.5 1.9E-11 4.1E-16 139.7 29.2 334 400-848 33-384 (399)
168 PRK14808 histidinol-phosphate 99.5 1.5E-11 3.3E-16 137.2 27.8 320 384-848 8-333 (335)
169 PF00155 Aminotran_1_2: Aminot 99.5 1.6E-11 3.4E-16 138.0 27.9 215 602-846 133-363 (363)
170 COG1168 MalY Bifunctional PLP- 99.5 2.6E-11 5.6E-16 132.0 28.1 223 602-853 148-387 (388)
171 PRK07777 aminotransferase; Val 99.5 3.7E-11 8E-16 136.7 31.0 207 620-850 160-384 (387)
172 PRK05664 threonine-phosphate d 99.5 2.2E-11 4.9E-16 135.6 28.7 195 621-851 127-327 (330)
173 PRK07550 hypothetical protein; 99.5 2.5E-11 5.5E-16 138.0 29.6 336 400-849 30-384 (386)
174 TIGR01979 sufS cysteine desulf 99.5 8.1E-11 1.8E-15 134.4 33.8 209 619-853 159-402 (403)
175 PRK02610 histidinol-phosphate 99.5 2.3E-11 5E-16 137.8 28.9 332 400-853 29-372 (374)
176 TIGR02326 transamin_PhnW 2-ami 99.5 2.8E-11 6.1E-16 136.3 29.3 204 630-851 139-361 (363)
177 PRK06348 aspartate aminotransf 99.5 3.6E-11 7.9E-16 136.7 30.4 203 621-848 165-381 (384)
178 PRK08361 aspartate aminotransf 99.5 2.1E-11 4.5E-16 139.0 28.1 209 621-852 169-390 (391)
179 PLN02656 tyrosine transaminase 99.5 6.1E-11 1.3E-15 136.0 31.9 216 618-853 169-404 (409)
180 PRK05387 histidinol-phosphate 99.5 1.8E-11 3.9E-16 137.2 27.0 318 400-851 25-352 (353)
181 TIGR03812 tyr_de_CO2_Arch tyro 99.5 5.3E-11 1.1E-15 134.3 30.7 324 417-848 32-372 (373)
182 PRK10534 L-threonine aldolase; 99.5 1.4E-11 2.9E-16 137.1 25.6 185 634-850 141-331 (333)
183 PRK08068 transaminase; Reviewe 99.5 4E-11 8.7E-16 136.5 29.9 202 620-848 169-385 (389)
184 PRK08912 hypothetical protein; 99.5 3.7E-11 8.1E-16 136.6 29.6 208 620-851 161-385 (387)
185 PRK07309 aromatic amino acid a 99.5 7.5E-11 1.6E-15 134.4 32.0 340 400-853 31-389 (391)
186 PLN03026 histidinol-phosphate 99.5 4.4E-11 9.6E-16 135.9 30.0 317 400-848 53-378 (380)
187 TIGR03537 DapC succinyldiamino 99.5 4.6E-11 1E-15 134.1 29.8 333 401-848 2-349 (350)
188 PRK13355 bifunctional HTH-doma 99.5 3.3E-11 7.1E-16 142.4 29.8 347 400-853 147-515 (517)
189 PRK07683 aminotransferase A; V 99.5 6.5E-11 1.4E-15 134.8 31.3 337 400-851 29-382 (387)
190 TIGR01976 am_tr_V_VC1184 cyste 99.4 1.2E-10 2.6E-15 132.6 33.4 332 400-846 19-397 (397)
191 PRK08363 alanine aminotransfer 99.4 6.3E-11 1.4E-15 135.3 30.9 346 400-852 31-394 (398)
192 PRK12414 putative aminotransfe 99.4 4.9E-11 1.1E-15 135.6 29.4 334 400-848 30-383 (384)
193 PTZ00433 tyrosine aminotransfe 99.4 5.9E-11 1.3E-15 136.3 30.1 213 621-854 180-410 (412)
194 PRK07366 succinyldiaminopimela 99.4 5.7E-11 1.2E-15 135.2 29.3 205 621-849 168-387 (388)
195 COG2008 GLY1 Threonine aldolas 99.4 2.6E-11 5.6E-16 131.7 24.9 316 417-850 12-341 (342)
196 PRK06425 histidinol-phosphate 99.4 3.1E-11 6.7E-16 134.6 26.5 283 440-850 37-331 (332)
197 PRK06107 aspartate aminotransf 99.4 9.2E-11 2E-15 134.2 30.8 348 400-853 34-401 (402)
198 PLN02855 Bifunctional selenocy 99.4 1.7E-10 3.6E-15 133.0 33.1 344 400-855 34-421 (424)
199 PRK09147 succinyldiaminopimela 99.4 7.9E-11 1.7E-15 134.4 30.0 336 400-850 30-394 (396)
200 PRK07392 threonine-phosphate d 99.4 7.3E-11 1.6E-15 133.0 29.1 322 400-850 23-357 (360)
201 PRK09082 methionine aminotrans 99.4 5.7E-11 1.2E-15 135.2 28.3 335 400-848 31-385 (386)
202 TIGR02006 IscS cysteine desulf 99.4 1.7E-10 3.8E-15 131.9 32.3 337 400-855 5-380 (402)
203 cd06452 SepCysS Sep-tRNA:Cys-t 99.4 6.2E-11 1.3E-15 133.6 27.9 211 619-850 139-360 (361)
204 PRK06290 aspartate aminotransf 99.4 9.3E-11 2E-15 134.6 29.8 215 621-854 182-407 (410)
205 PRK02948 cysteine desulfurase; 99.4 4.8E-11 1E-15 135.4 27.1 336 400-854 2-376 (381)
206 TIGR03540 DapC_direct LL-diami 99.4 8.7E-11 1.9E-15 133.4 29.2 200 621-847 167-381 (383)
207 TIGR01977 am_tr_V_EF2568 cyste 99.4 2.3E-10 4.9E-15 129.3 32.4 323 418-848 13-375 (376)
208 cd00616 AHBA_syn 3-amino-5-hyd 99.4 4.5E-11 9.7E-16 133.6 26.3 301 423-847 3-352 (352)
209 PRK14807 histidinol-phosphate 99.4 1.4E-10 3E-15 130.3 30.4 307 412-850 33-350 (351)
210 PLN00145 tyrosine/nicotianamin 99.4 1.4E-10 3E-15 134.0 30.6 350 400-854 53-426 (430)
211 PRK05957 aspartate aminotransf 99.4 2.6E-10 5.6E-15 130.0 32.4 208 621-853 163-386 (389)
212 PRK09276 LL-diaminopimelate am 99.4 9.3E-11 2E-15 133.2 28.7 200 621-847 169-383 (385)
213 PLN02187 rooty/superroot1 99.4 1.3E-10 2.8E-15 135.3 30.5 220 618-855 204-441 (462)
214 PRK13479 2-aminoethylphosphona 99.4 2.2E-10 4.7E-15 129.3 31.3 213 621-853 134-364 (368)
215 PRK09265 aminotransferase AlaT 99.4 3.6E-10 7.8E-15 129.4 32.3 212 620-853 170-402 (404)
216 PLN00143 tyrosine/nicotianamin 99.4 2.7E-10 5.8E-15 130.8 31.0 332 417-853 50-405 (409)
217 TIGR01264 tyr_amTase_E tyrosin 99.4 2E-10 4.4E-15 131.3 29.7 209 621-852 171-399 (401)
218 PRK08636 aspartate aminotransf 99.4 2E-10 4.3E-15 131.5 29.6 210 619-852 176-400 (403)
219 PRK06959 putative threonine-ph 99.4 1.2E-10 2.6E-15 130.3 27.2 198 621-855 133-336 (339)
220 cd00614 CGS_like CGS_like: Cys 99.4 1.5E-11 3.2E-16 139.3 20.0 236 439-792 36-293 (369)
221 PRK13238 tnaA tryptophanase/L- 99.4 2.4E-10 5.2E-15 132.7 30.4 232 602-853 164-434 (460)
222 PRK08175 aminotransferase; Val 99.4 2.6E-10 5.6E-15 130.2 29.9 211 619-852 164-389 (395)
223 TIGR03539 DapC_actino succinyl 99.4 2.5E-10 5.4E-15 128.6 28.9 317 400-846 22-356 (357)
224 PRK05166 histidinol-phosphate 99.4 2.9E-10 6.3E-15 128.7 28.8 320 400-850 37-369 (371)
225 PRK08354 putative aminotransfe 99.4 4.9E-10 1.1E-14 123.8 29.6 292 400-849 9-309 (311)
226 PRK04870 histidinol-phosphate 99.4 2.8E-10 6E-15 128.0 28.0 318 400-849 27-355 (356)
227 PRK01688 histidinol-phosphate 99.4 6.7E-11 1.5E-15 132.9 22.7 193 620-846 147-350 (351)
228 TIGR01265 tyr_nico_aTase tyros 99.3 4.9E-10 1.1E-14 128.3 29.5 213 619-852 170-401 (403)
229 PRK06855 aminotransferase; Val 99.3 5.4E-10 1.2E-14 129.2 30.0 228 602-852 160-429 (433)
230 PRK07337 aminotransferase; Val 99.3 5.2E-10 1.1E-14 127.3 29.4 211 618-850 163-387 (388)
231 PRK05942 aspartate aminotransf 99.3 5.1E-10 1.1E-14 127.7 29.3 200 621-847 173-387 (394)
232 TIGR03538 DapC_gpp succinyldia 99.3 6.2E-10 1.3E-14 126.9 29.6 199 621-849 168-392 (393)
233 TIGR01437 selA_rel uncharacter 99.3 1.4E-09 3E-14 122.9 32.1 323 417-850 25-363 (363)
234 PTZ00377 alanine aminotransfer 99.3 6.4E-10 1.4E-14 130.3 30.1 221 621-855 221-478 (481)
235 PRK07865 N-succinyldiaminopime 99.3 1E-09 2.2E-14 123.8 30.8 200 619-847 148-363 (364)
236 KOG1358 Serine palmitoyltransf 99.3 7.9E-11 1.7E-15 127.6 20.1 355 377-852 79-465 (467)
237 TIGR03403 nifS_epsilon cystein 99.3 3.3E-09 7.1E-14 120.5 34.2 205 620-855 141-378 (382)
238 PRK13580 serine hydroxymethylt 99.3 3.5E-10 7.7E-15 130.1 26.0 188 643-853 237-446 (493)
239 PLN03226 serine hydroxymethylt 99.3 2.8E-10 6E-15 132.5 25.1 188 643-852 200-419 (475)
240 COG1104 NifS Cysteine sulfinat 99.3 7.9E-10 1.7E-14 122.6 26.8 336 400-856 3-381 (386)
241 PRK00011 glyA serine hydroxyme 99.3 1.8E-09 3.9E-14 124.0 31.1 186 643-852 182-389 (416)
242 PLN02651 cysteine desulfurase 99.3 2.7E-10 5.9E-15 128.5 23.8 318 417-840 11-364 (364)
243 PLN02672 methionine S-methyltr 99.3 9.5E-10 2.1E-14 136.5 30.1 357 388-851 690-1079(1082)
244 PLN02409 serine--glyoxylate am 99.3 8.3E-10 1.8E-14 126.4 26.9 308 443-854 42-374 (401)
245 PRK05839 hypothetical protein; 99.3 2.5E-09 5.3E-14 121.3 30.5 328 400-851 25-373 (374)
246 PRK07590 L,L-diaminopimelate a 99.3 2.5E-09 5.5E-14 122.7 30.9 210 620-849 178-408 (409)
247 PF00266 Aminotran_5: Aminotra 99.3 7.5E-10 1.6E-14 125.2 26.0 322 413-842 8-371 (371)
248 TIGR01325 O_suc_HS_sulf O-succ 99.3 1.9E-10 4.1E-15 130.8 20.8 236 439-792 50-306 (380)
249 PLN02376 1-aminocyclopropane-1 99.3 3.3E-09 7.1E-14 124.6 31.3 215 621-854 202-440 (496)
250 PRK03967 histidinol-phosphate 99.3 2.1E-09 4.6E-14 120.2 28.0 307 400-851 19-333 (337)
251 PLN02607 1-aminocyclopropane-1 99.3 4.2E-09 9.1E-14 122.2 31.0 213 621-855 203-440 (447)
252 cd00378 SHMT Serine-glycine hy 99.3 1.5E-09 3.3E-14 123.9 26.6 203 621-854 164-387 (402)
253 PRK06836 aspartate aminotransf 99.2 6.3E-09 1.4E-13 118.8 31.4 205 620-853 169-392 (394)
254 PRK04781 histidinol-phosphate 99.2 1.6E-09 3.6E-14 122.4 25.8 194 621-850 155-361 (364)
255 PLN02231 alanine transaminase 99.2 2.5E-09 5.5E-14 126.4 27.9 224 620-857 273-532 (534)
256 KOG1368 Threonine aldolase [Am 99.2 2E-09 4.4E-14 113.1 23.7 331 400-850 22-366 (384)
257 PRK07908 hypothetical protein; 99.2 4.1E-09 8.9E-14 118.2 27.4 193 621-851 142-346 (349)
258 PRK09257 aromatic amino acid a 99.2 4.6E-09 9.9E-14 120.0 27.9 198 619-850 173-396 (396)
259 cd06450 DOPA_deC_like DOPA dec 99.2 4E-09 8.7E-14 117.6 26.9 185 620-848 150-344 (345)
260 PTZ00376 aspartate aminotransf 99.2 3E-09 6.4E-14 121.9 26.2 202 619-851 177-402 (404)
261 PRK09440 avtA valine--pyruvate 99.2 1.1E-08 2.3E-13 117.7 30.7 211 620-854 181-413 (416)
262 PLN02450 1-aminocyclopropane-1 99.2 1.4E-08 3E-13 118.7 32.0 213 621-854 194-432 (468)
263 COG1167 ARO8 Transcriptional r 99.2 1.5E-08 3.2E-13 118.0 31.8 343 400-854 90-457 (459)
264 COG0520 csdA Selenocysteine ly 99.2 1.6E-08 3.4E-13 115.6 31.1 340 400-851 24-404 (405)
265 PRK04635 histidinol-phosphate 99.2 2.8E-09 6E-14 119.9 24.8 193 621-848 150-351 (354)
266 PRK14012 cysteine desulfurase; 99.2 1.8E-08 4E-13 115.4 31.6 333 400-855 5-382 (404)
267 PRK06767 methionine gamma-lyas 99.2 5.4E-10 1.2E-14 127.3 18.3 169 619-820 146-329 (386)
268 TIGR03542 DAPAT_plant LL-diami 99.2 7.9E-09 1.7E-13 118.3 27.1 201 620-849 175-401 (402)
269 PTZ00094 serine hydroxymethylt 99.2 1.3E-08 2.8E-13 118.5 28.1 197 633-852 193-408 (452)
270 PRK04366 glycine dehydrogenase 99.1 3.2E-08 6.9E-13 116.0 30.1 223 619-861 209-457 (481)
271 PRK07810 O-succinylhomoserine 99.1 2.9E-09 6.2E-14 122.0 20.2 236 439-793 66-324 (403)
272 PRK08637 hypothetical protein; 99.1 4.2E-08 9.1E-13 111.8 29.1 215 619-853 147-387 (388)
273 TIGR02379 ECA_wecE TDP-4-keto- 99.1 1.5E-08 3.3E-13 115.0 24.9 316 419-850 11-375 (376)
274 PLN02242 methionine gamma-lyas 99.1 3E-09 6.6E-14 122.2 18.4 173 440-713 73-248 (418)
275 PRK06234 methionine gamma-lyas 99.1 8.7E-09 1.9E-13 118.0 21.4 238 440-793 61-321 (400)
276 PRK08249 cystathionine gamma-s 99.1 9E-09 1.9E-13 117.7 21.4 237 439-793 60-317 (398)
277 TIGR01328 met_gam_lyase methio 99.1 7.6E-09 1.6E-13 118.1 20.5 148 619-792 144-313 (391)
278 PRK07049 methionine gamma-lyas 99.1 8.1E-09 1.7E-13 119.1 20.9 242 439-793 79-350 (427)
279 TIGR03235 DNA_S_dndA cysteine 99.0 3E-08 6.4E-13 111.4 24.0 293 417-822 10-321 (353)
280 PRK11658 UDP-4-amino-4-deoxy-L 99.0 5.7E-08 1.2E-12 110.5 26.2 309 419-850 14-377 (379)
281 PRK15407 lipopolysaccharide bi 99.0 5.3E-08 1.2E-12 112.7 26.3 314 422-851 47-435 (438)
282 PRK12566 glycine dehydrogenase 99.0 1.3E-07 2.7E-12 115.6 30.4 318 443-858 543-882 (954)
283 TIGR01324 cysta_beta_ly_B cyst 99.0 8.4E-09 1.8E-13 117.1 19.3 251 440-814 47-318 (377)
284 PRK08574 cystathionine gamma-s 99.0 1.6E-08 3.5E-13 115.2 21.0 233 440-792 50-307 (385)
285 PRK08247 cystathionine gamma-s 99.0 1.8E-08 4E-13 114.0 21.3 235 439-792 48-288 (366)
286 PRK08045 cystathionine gamma-s 99.0 1.9E-08 4.2E-13 114.5 21.5 236 439-793 48-306 (386)
287 PRK06084 O-acetylhomoserine am 99.0 1.6E-08 3.4E-13 116.6 20.8 163 440-704 55-219 (425)
288 PRK08133 O-succinylhomoserine 99.0 2.3E-08 5E-13 114.1 22.0 147 619-792 146-313 (390)
289 PRK07503 methionine gamma-lyas 99.0 2.4E-08 5.1E-13 114.5 22.0 150 619-793 150-320 (403)
290 PLN02397 aspartate transaminas 99.0 8.4E-08 1.8E-12 110.7 26.5 202 619-851 195-420 (423)
291 TIGR01326 OAH_OAS_sulfhy OAH/O 99.0 1.5E-08 3.3E-13 116.6 20.2 164 439-705 53-219 (418)
292 PRK05994 O-acetylhomoserine am 99.0 3.7E-08 7.9E-13 113.7 23.1 162 440-703 60-223 (427)
293 PRK07504 O-succinylhomoserine 99.0 2.1E-08 4.6E-13 114.7 20.9 147 619-793 150-319 (398)
294 PRK07582 cystathionine gamma-l 99.0 4E-08 8.7E-13 111.2 22.6 145 619-792 132-300 (366)
295 PRK06460 hypothetical protein; 99.0 3.9E-08 8.4E-13 111.7 22.3 148 619-793 130-298 (376)
296 PRK08776 cystathionine gamma-s 99.0 7.1E-08 1.5E-12 110.6 24.5 147 620-793 146-314 (405)
297 PRK11706 TDP-4-oxo-6-deoxy-D-g 99.0 1.7E-07 3.6E-12 106.5 26.3 305 421-850 13-374 (375)
298 PLN02414 glycine dehydrogenase 98.9 4.1E-07 8.8E-12 113.2 30.4 320 443-857 568-912 (993)
299 PRK07811 cystathionine gamma-s 98.9 8.8E-08 1.9E-12 109.3 22.4 236 440-793 58-315 (388)
300 TIGR02080 O_succ_thio_ly O-suc 98.9 4.6E-08 1E-12 111.3 19.9 237 439-793 47-305 (382)
301 COG0075 Serine-pyruvate aminot 98.9 5E-07 1.1E-11 101.2 27.4 328 418-854 17-365 (383)
302 PRK07269 cystathionine gamma-s 98.9 4E-08 8.6E-13 111.1 19.0 233 439-792 50-288 (364)
303 cd00617 Tnase_like Tryptophana 98.9 7.1E-07 1.5E-11 102.8 29.4 235 602-855 139-411 (431)
304 PRK09275 aspartate aminotransf 98.9 3.2E-07 7E-12 107.7 26.8 225 619-859 242-524 (527)
305 PRK04311 selenocysteine syntha 98.9 4.6E-07 9.9E-12 105.3 27.7 320 418-851 99-463 (464)
306 PRK08861 cystathionine gamma-s 98.9 6.7E-08 1.5E-12 110.0 20.4 237 439-793 49-307 (388)
307 PRK05968 hypothetical protein; 98.9 4.6E-08 1E-12 111.6 19.1 165 621-819 149-329 (389)
308 TIGR03588 PseC UDP-4-keto-6-de 98.9 4.1E-07 8.9E-12 103.4 26.7 312 419-850 10-380 (380)
309 PLN02368 alanine transaminase 98.9 1.4E-07 3.1E-12 108.2 23.1 158 620-789 212-392 (407)
310 PF01041 DegT_DnrJ_EryC1: DegT 98.9 4.2E-07 9.1E-12 102.8 25.8 307 419-847 5-363 (363)
311 PRK07050 cystathionine beta-ly 98.9 1.4E-07 3E-12 107.9 21.9 172 439-712 61-236 (394)
312 PRK00451 glycine dehydrogenase 98.9 1.7E-06 3.7E-11 100.5 30.9 201 619-850 204-446 (447)
313 KOG0259 Tyrosine aminotransfer 98.9 1.7E-06 3.7E-11 94.3 28.2 336 417-854 79-435 (447)
314 TIGR00474 selA seryl-tRNA(sec) 98.9 5.7E-07 1.2E-11 104.2 26.5 312 418-846 94-453 (454)
315 cd01494 AAT_I Aspartate aminot 98.8 4.9E-08 1.1E-12 96.2 14.6 79 617-704 90-170 (170)
316 PRK03080 phosphoserine aminotr 98.8 2.7E-07 5.8E-12 105.0 22.2 201 631-855 147-376 (378)
317 PLN02509 cystathionine beta-ly 98.8 2.7E-07 5.8E-12 107.2 22.2 147 619-792 217-385 (464)
318 TIGR00461 gcvP glycine dehydro 98.8 1.7E-06 3.6E-11 106.7 29.6 313 443-857 530-872 (939)
319 TIGR03801 asp_4_decarbox aspar 98.8 6.3E-07 1.4E-11 105.2 24.8 219 619-855 241-519 (521)
320 PRK05367 glycine dehydrogenase 98.8 7E-07 1.5E-11 111.4 26.5 313 443-857 542-880 (954)
321 TIGR01329 cysta_beta_ly_E cyst 98.8 3.3E-07 7.2E-12 104.2 20.9 170 619-823 131-322 (378)
322 PRK06176 cystathionine gamma-s 98.8 3.3E-07 7.1E-12 104.3 20.6 83 619-712 134-220 (380)
323 PRK09028 cystathionine beta-ly 98.8 4.6E-07 1E-11 103.3 21.2 288 441-856 59-391 (394)
324 PRK07812 O-acetylhomoserine am 98.8 8.5E-07 1.8E-11 102.5 22.7 64 619-693 155-220 (436)
325 cd00615 Orn_deC_like Ornithine 98.7 1E-07 2.2E-12 104.6 14.2 142 602-762 143-291 (294)
326 TIGR01366 serC_3 phosphoserine 98.7 5.4E-07 1.2E-11 101.9 20.2 210 620-853 129-361 (361)
327 KOG0257 Kynurenine aminotransf 98.7 3.5E-06 7.7E-11 93.3 25.6 208 418-712 46-268 (420)
328 PRK08248 O-acetylhomoserine am 98.7 6.6E-07 1.4E-11 103.4 20.9 162 440-703 61-224 (431)
329 PRK05613 O-acetylhomoserine am 98.7 8.6E-07 1.9E-11 102.5 19.4 154 439-693 65-220 (437)
330 PRK13237 tyrosine phenol-lyase 98.6 1.9E-05 4.1E-10 90.6 28.7 232 602-855 164-436 (460)
331 TIGR03531 selenium_SpcS O-phos 98.6 8.6E-06 1.9E-10 94.0 25.7 219 602-850 192-444 (444)
332 PRK08064 cystathionine beta-ly 98.6 2.9E-06 6.4E-11 96.9 21.7 155 619-792 138-306 (390)
333 PLN02880 tyrosine decarboxylas 98.6 1.5E-05 3.2E-10 93.7 27.7 240 602-854 224-486 (490)
334 PF01053 Cys_Met_Meta_PP: Cys/ 98.6 1.6E-06 3.4E-11 98.6 18.9 238 439-794 51-312 (386)
335 PRK08114 cystathionine beta-ly 98.6 2E-06 4.4E-11 98.0 19.5 237 439-793 58-317 (395)
336 PLN03032 serine decarboxylase; 98.6 2.5E-05 5.5E-10 88.5 28.2 210 602-848 149-372 (374)
337 TIGR01788 Glu-decarb-GAD gluta 98.6 3.8E-05 8.2E-10 88.8 30.1 227 602-853 177-430 (431)
338 PRK05967 cystathionine beta-ly 98.6 1.7E-06 3.8E-11 98.6 18.8 236 440-793 61-317 (395)
339 PRK08134 O-acetylhomoserine am 98.6 3E-06 6.4E-11 98.1 20.9 152 440-693 61-214 (433)
340 PRK02769 histidine decarboxyla 98.6 3.6E-05 7.9E-10 87.6 29.4 213 602-852 148-372 (380)
341 PRK06702 O-acetylhomoserine am 98.6 5.1E-06 1.1E-10 95.8 21.5 152 441-693 59-212 (432)
342 PRK07671 cystathionine beta-ly 98.6 3.7E-06 8E-11 95.7 20.1 147 619-792 134-302 (377)
343 KOG0256 1-aminocyclopropane-1- 98.6 7.6E-05 1.6E-09 82.5 29.0 213 618-851 225-460 (471)
344 TIGR03799 NOD_PanD_pyr putativ 98.5 5.4E-05 1.2E-09 89.4 30.0 216 619-845 265-518 (522)
345 TIGR01364 serC_1 phosphoserine 98.5 1.8E-05 4E-10 89.1 24.2 199 618-851 132-347 (349)
346 COG0399 WecE Predicted pyridox 98.5 4.7E-05 1E-09 85.6 27.0 309 419-851 15-372 (374)
347 TIGR01007 eps_fam capsular exo 98.5 3E-06 6.6E-11 87.8 16.3 77 195-290 115-191 (204)
348 TIGR02618 tyr_phenol_ly tyrosi 98.5 6.8E-05 1.5E-09 85.9 28.1 232 602-855 157-429 (450)
349 PLN02590 probable tyrosine dec 98.5 7E-05 1.5E-09 88.5 29.2 224 620-854 288-534 (539)
350 PRK06434 cystathionine gamma-l 98.5 4.4E-06 9.6E-11 95.0 18.4 147 618-793 147-309 (384)
351 PRK05939 hypothetical protein; 98.5 5.1E-06 1.1E-10 95.1 18.5 74 619-704 131-207 (397)
352 TIGR02617 tnaA_trp_ase tryptop 98.5 9.1E-05 2E-09 84.3 27.7 232 602-854 170-443 (467)
353 COG3977 Alanine-alpha-ketoisov 98.5 0.0001 2.2E-09 78.4 25.7 212 617-853 177-412 (417)
354 PRK05355 3-phosphoserine/phosp 98.4 2.9E-05 6.3E-10 87.8 22.0 198 618-851 143-357 (360)
355 KOG0633 Histidinol phosphate a 98.4 4.5E-05 9.7E-10 79.5 21.0 201 619-849 160-374 (375)
356 KOG1549 Cysteine desulfurase N 98.4 2.9E-05 6.2E-10 87.3 20.6 347 400-854 45-420 (428)
357 COG1103 Archaea-specific pyrid 98.4 3.5E-05 7.5E-10 80.8 19.4 308 441-852 59-380 (382)
358 TIGR01969 minD_arch cell divis 98.3 1.2E-05 2.7E-10 85.6 16.3 102 193-316 94-200 (251)
359 cd02037 MRP-like MRP (Multiple 98.3 1.7E-05 3.6E-10 79.8 16.1 88 221-314 68-169 (169)
360 PRK15029 arginine decarboxylas 98.3 8.2E-05 1.8E-09 90.7 24.2 216 620-851 314-603 (755)
361 PLN02263 serine decarboxylase 98.3 0.00086 1.9E-08 77.8 29.8 215 602-852 216-443 (470)
362 KOG0634 Aromatic amino acid am 98.2 7.8E-05 1.7E-09 83.0 20.1 239 602-854 185-468 (472)
363 PF01212 Beta_elim_lyase: Beta 98.2 2.8E-06 6.1E-11 93.0 8.3 197 418-710 8-214 (290)
364 COG1003 GcvP Glycine cleavage 98.2 0.00035 7.7E-09 78.0 24.4 314 443-857 109-452 (496)
365 KOG2862 Alanine-glyoxylate ami 98.2 0.00034 7.3E-09 75.0 23.1 225 602-852 132-382 (385)
366 CHL00175 minD septum-site dete 98.2 7.8E-06 1.7E-10 89.1 11.1 87 221-316 127-222 (281)
367 COG2873 MET17 O-acetylhomoseri 98.2 0.00012 2.6E-09 80.3 19.4 181 428-711 48-230 (426)
368 TIGR01968 minD_bact septum sit 98.2 8.8E-06 1.9E-10 87.2 10.7 102 193-316 97-207 (261)
369 PLN02724 Molybdenum cofactor s 98.1 0.0014 3.1E-08 81.8 29.8 217 619-851 192-487 (805)
370 cd00611 PSAT_like Phosphoserin 98.1 0.00053 1.1E-08 77.4 23.8 182 648-849 157-353 (355)
371 TIGR03029 EpsG chain length de 98.1 0.00014 2.9E-09 79.1 17.6 74 196-288 201-274 (274)
372 PRK15399 lysine decarboxylase 98.0 0.0005 1.1E-08 83.2 22.6 312 442-851 194-558 (713)
373 COG0626 MetC Cystathionine bet 98.0 0.00028 6.1E-09 79.9 19.0 234 441-793 61-319 (396)
374 PLN02271 serine hydroxymethylt 98.0 0.00042 9.1E-09 81.1 20.7 202 619-851 298-539 (586)
375 cd02036 MinD Bacterial cell di 97.9 4.9E-05 1.1E-09 76.4 10.4 85 222-315 64-155 (179)
376 PF01656 CbiA: CobQ/CobB/MinD/ 97.9 5.8E-05 1.3E-09 76.9 10.8 66 221-293 95-162 (195)
377 cd02033 BchX Chlorophyllide re 97.9 0.00012 2.6E-09 81.4 13.7 91 221-317 148-245 (329)
378 COG1149 MinD superfamily P-loo 97.9 0.00022 4.7E-09 75.7 14.3 115 180-316 136-252 (284)
379 TIGR03018 pepcterm_TyrKin exop 97.9 0.00046 1E-08 71.8 16.9 74 195-287 134-207 (207)
380 COG0489 Mrp ATPases involved i 97.9 0.00045 9.7E-09 74.8 17.0 86 221-315 167-260 (265)
381 PRK15400 lysine decarboxylase 97.9 0.00068 1.5E-08 82.0 19.6 313 442-850 194-557 (714)
382 PF01276 OKR_DC_1: Orn/Lys/Arg 97.8 0.00019 4.2E-09 81.8 13.9 230 442-763 65-314 (417)
383 COG3844 Kynureninase [Amino ac 97.8 0.021 4.6E-07 62.0 27.5 215 617-853 164-403 (407)
384 COG0112 GlyA Glycine/serine hy 97.8 0.0051 1.1E-07 68.5 23.5 185 643-854 183-392 (413)
385 PRK13578 ornithine decarboxyla 97.8 0.0024 5.3E-08 77.4 23.0 47 805-851 517-564 (720)
386 PF00464 SHMT: Serine hydroxym 97.7 0.001 2.3E-08 75.6 17.7 192 620-844 170-397 (399)
387 PRK05367 glycine dehydrogenase 97.7 0.004 8.6E-08 78.5 24.3 202 619-847 206-437 (954)
388 cd03110 Fer4_NifH_child This p 97.7 0.0019 4.2E-08 65.3 16.9 84 220-311 92-179 (179)
389 PLN02452 phosphoserine transam 97.6 0.0054 1.2E-07 69.6 21.7 177 655-851 171-362 (365)
390 PRK14494 putative molybdopteri 97.6 0.00017 3.7E-09 76.1 8.6 44 37-86 1-44 (229)
391 PRK11670 antiporter inner memb 97.6 0.0012 2.6E-08 74.9 15.6 88 221-316 216-319 (369)
392 PRK11519 tyrosine kinase; Prov 97.6 0.0007 1.5E-08 83.5 14.5 77 195-290 623-699 (719)
393 TIGR02016 BchX chlorophyllide 97.6 0.00099 2.2E-08 73.4 13.9 91 221-317 123-220 (296)
394 PRK09841 cryptic autophosphory 97.6 0.0012 2.6E-08 81.5 16.0 77 195-290 628-704 (726)
395 TIGR01365 serC_2 phosphoserine 97.5 0.0095 2.1E-07 67.7 21.6 211 620-851 131-372 (374)
396 PLN02414 glycine dehydrogenase 97.5 0.028 6.2E-07 70.9 27.1 203 618-848 233-465 (993)
397 cd00550 ArsA_ATPase Oxyanion-t 97.4 0.0018 3.9E-08 69.7 13.8 64 252-316 162-242 (254)
398 TIGR03815 CpaE_hom_Actino heli 97.4 0.013 2.7E-07 65.4 20.2 101 193-316 190-293 (322)
399 COG3640 CooC CO dehydrogenase 97.3 0.0086 1.9E-07 62.6 16.4 93 221-321 134-228 (255)
400 cd02117 NifH_like This family 97.3 0.0022 4.9E-08 66.9 12.4 34 39-78 2-35 (212)
401 KOG2040 Glycine dehydrogenase 97.3 0.035 7.7E-07 64.8 22.2 317 443-858 582-924 (1001)
402 KOG0053 Cystathionine beta-lya 97.3 0.006 1.3E-07 68.8 15.8 193 440-740 74-270 (409)
403 PRK12462 phosphoserine aminotr 97.2 0.064 1.4E-06 60.7 22.8 189 632-851 155-361 (364)
404 TIGR01005 eps_transp_fam exopo 97.1 0.0038 8.2E-08 77.7 13.6 76 196-290 644-719 (754)
405 COG1703 ArgK Putative periplas 97.1 0.022 4.8E-07 61.6 17.0 35 38-78 52-86 (323)
406 PRK00771 signal recognition pa 97.1 0.027 5.9E-07 65.2 18.9 36 37-78 95-130 (437)
407 KOG3022 Predicted ATPase, nucl 97.1 0.0061 1.3E-07 65.0 12.4 90 220-317 156-262 (300)
408 PF00282 Pyridoxal_deC: Pyrido 97.1 0.053 1.2E-06 61.8 21.1 70 632-706 206-278 (373)
409 cd02035 ArsA ArsA ATPase funct 97.1 0.0052 1.1E-07 64.5 11.9 64 221-290 114-181 (217)
410 COG0076 GadB Glutamate decarbo 97.0 0.23 4.9E-06 58.2 25.9 103 643-749 226-341 (460)
411 cd02032 Bchl_like This family 97.0 0.0032 7E-08 68.1 10.1 90 220-317 115-210 (267)
412 cd02040 NifH NifH gene encodes 97.0 0.011 2.4E-07 63.7 14.3 36 37-78 1-36 (270)
413 PRK13185 chlL protochlorophyll 96.9 0.012 2.5E-07 63.8 13.7 90 220-317 117-212 (270)
414 COG0455 flhG Antiactivator of 96.9 0.015 3.2E-07 62.9 13.8 102 192-314 97-206 (262)
415 PRK13232 nifH nitrogenase redu 96.9 0.012 2.6E-07 64.0 13.2 36 37-78 1-36 (273)
416 cd02038 FleN-like FleN is a me 96.9 0.017 3.7E-07 56.2 12.8 83 222-311 46-139 (139)
417 COG2894 MinD Septum formation 96.9 0.0096 2.1E-07 61.5 11.2 36 38-78 3-38 (272)
418 TIGR00064 ftsY signal recognit 96.8 0.03 6.6E-07 61.0 15.6 36 37-78 72-107 (272)
419 PF12897 Aminotran_MocR: Alani 96.8 0.16 3.4E-06 57.0 20.8 223 602-851 161-414 (425)
420 TIGR01425 SRP54_euk signal rec 96.8 0.032 6.9E-07 64.3 16.2 35 38-78 101-135 (429)
421 PRK10867 signal recognition pa 96.8 0.068 1.5E-06 61.8 18.8 34 39-78 102-136 (433)
422 CHL00072 chlL photochlorophyll 96.8 0.018 3.9E-07 63.3 13.5 33 40-78 3-35 (290)
423 COG3033 TnaA Tryptophanase [Am 96.7 0.55 1.2E-05 52.0 24.0 228 601-853 171-445 (471)
424 cd01983 Fer4_NifH The Fer4_Nif 96.7 0.015 3.4E-07 51.3 10.4 33 40-78 2-34 (99)
425 COG1763 MobB Molybdopterin-gua 96.7 0.0042 9.1E-08 62.0 7.0 37 37-79 2-38 (161)
426 COG1982 LdcC Arginine/lysine/o 96.7 0.43 9.3E-06 56.4 24.4 66 620-693 168-236 (557)
427 TIGR00959 ffh signal recogniti 96.7 0.08 1.7E-06 61.2 18.4 82 221-310 183-272 (428)
428 PRK14974 cell division protein 96.7 0.023 5E-07 63.6 13.4 36 37-78 140-175 (336)
429 PHA02518 ParA-like protein; Pr 96.6 0.048 1E-06 56.4 15.0 35 39-78 2-36 (211)
430 TIGR00176 mobB molybdopterin-g 96.6 0.007 1.5E-07 60.3 8.0 39 40-84 2-40 (155)
431 PRK13849 putative crown gall t 96.6 0.051 1.1E-06 57.7 14.9 37 37-78 1-37 (231)
432 TIGR01281 DPOR_bchL light-inde 96.6 0.021 4.5E-07 61.8 12.1 88 220-315 115-208 (268)
433 PRK13230 nitrogenase reductase 96.5 0.026 5.7E-07 61.5 12.7 36 37-78 1-36 (279)
434 TIGR01287 nifH nitrogenase iro 96.5 0.058 1.3E-06 58.6 15.2 34 39-78 2-35 (275)
435 PRK13236 nitrogenase reductase 96.5 0.029 6.3E-07 61.9 12.7 37 36-78 5-41 (296)
436 TIGR03371 cellulose_yhjQ cellu 96.5 0.054 1.2E-06 57.5 14.3 37 37-78 1-37 (246)
437 cd03116 MobB Molybdenum is an 96.5 0.019 4E-07 57.5 10.0 41 37-83 1-41 (159)
438 cd03115 SRP The signal recogni 96.4 0.091 2E-06 52.8 14.8 33 40-78 3-35 (173)
439 PRK13231 nitrogenase reductase 96.3 0.044 9.5E-07 59.2 12.4 91 221-316 114-208 (264)
440 PF07755 DUF1611: Protein of u 96.2 0.01 2.2E-07 64.9 7.4 38 36-78 111-148 (301)
441 PRK10818 cell division inhibit 96.2 0.058 1.3E-06 58.3 13.3 37 37-78 2-38 (270)
442 COG1448 TyrB Aspartate/tyrosin 96.2 0.079 1.7E-06 59.1 13.8 200 622-849 175-395 (396)
443 COG1921 SelA Selenocysteine sy 96.2 0.34 7.4E-06 54.8 18.9 95 643-747 176-273 (395)
444 PRK10416 signal recognition pa 96.1 0.12 2.5E-06 57.7 15.2 36 37-78 114-149 (318)
445 COG3367 Uncharacterized conser 96.1 0.073 1.6E-06 58.1 12.9 37 37-78 148-184 (339)
446 PRK11889 flhF flagellar biosyn 96.1 0.095 2.1E-06 59.5 14.3 35 38-78 242-276 (436)
447 TIGR00461 gcvP glycine dehydro 96.1 1.3 2.8E-05 55.9 25.2 43 805-847 383-426 (939)
448 TIGR00750 lao LAO/AO transport 96.0 0.28 6.1E-06 54.2 17.6 36 37-78 34-69 (300)
449 PF03841 SelA: L-seryl-tRNA se 96.0 0.013 2.7E-07 65.5 6.8 95 643-745 159-261 (367)
450 PRK13869 plasmid-partitioning 96.0 0.19 4E-06 58.0 16.6 65 9-78 87-157 (405)
451 PRK14495 putative molybdopteri 96.0 0.025 5.5E-07 64.7 9.1 37 37-79 1-37 (452)
452 PRK12727 flagellar biosynthesi 95.9 0.19 4.1E-06 59.2 15.9 85 221-311 429-518 (559)
453 PRK13235 nifH nitrogenase redu 95.8 0.18 3.9E-06 54.7 14.9 36 37-78 1-36 (274)
454 PRK12723 flagellar biosynthesi 95.8 0.15 3.3E-06 58.2 14.6 85 221-310 255-345 (388)
455 PRK13233 nifH nitrogenase redu 95.8 0.1 2.2E-06 56.7 12.6 35 38-78 3-38 (275)
456 TIGR03453 partition_RepA plasm 95.6 0.19 4.1E-06 57.6 14.7 66 8-78 71-140 (387)
457 COG0541 Ffh Signal recognition 95.6 0.17 3.6E-06 57.6 13.6 44 29-78 91-135 (451)
458 PRK12726 flagellar biosynthesi 95.6 0.17 3.7E-06 57.3 13.4 36 37-78 206-241 (407)
459 PRK13234 nifH nitrogenase redu 95.5 0.078 1.7E-06 58.4 10.6 37 36-78 3-39 (295)
460 PF05889 SLA_LP_auto_ag: Solub 95.5 0.66 1.4E-05 52.5 17.7 222 602-851 142-389 (389)
461 PF06564 YhjQ: YhjQ protein; 95.5 0.016 3.5E-07 61.7 4.7 37 37-78 1-37 (243)
462 PF02347 GDC-P: Glycine cleava 95.4 2.3 5E-05 49.2 22.0 201 617-846 195-429 (429)
463 PRK05703 flhF flagellar biosyn 95.4 0.1 2.2E-06 60.5 11.2 38 37-78 221-258 (424)
464 PF07015 VirC1: VirC1 protein; 95.3 0.41 8.8E-06 50.6 14.4 37 37-78 1-37 (231)
465 PF03308 ArgK: ArgK protein; 95.2 0.25 5.4E-06 52.9 12.4 51 12-78 14-64 (266)
466 PF00142 Fer4_NifH: 4Fe-4S iro 95.1 0.15 3.3E-06 54.7 10.5 88 220-316 116-215 (273)
467 PF00448 SRP54: SRP54-type pro 94.9 0.23 5E-06 51.4 11.3 34 39-78 3-36 (196)
468 PRK13886 conjugal transfer pro 94.9 0.62 1.3E-05 49.8 14.7 36 38-78 3-38 (241)
469 COG2403 Predicted GTPase [Gene 94.9 0.039 8.5E-07 61.0 5.7 63 11-78 96-162 (449)
470 PRK09435 membrane ATPase/prote 94.9 0.77 1.7E-05 51.5 15.9 34 39-78 58-91 (332)
471 COG1348 NifH Nitrogenase subun 94.9 0.25 5.5E-06 51.7 11.0 87 222-317 119-217 (278)
472 PF03205 MobB: Molybdopterin g 94.8 0.031 6.7E-07 54.7 4.3 39 38-82 1-39 (140)
473 cd03114 ArgK-like The function 94.6 0.47 1E-05 46.8 12.0 33 40-78 2-34 (148)
474 cd03113 CTGs CTP synthetase (C 94.6 0.35 7.5E-06 51.3 11.4 105 195-312 118-237 (255)
475 PRK14491 putative bifunctional 94.5 0.22 4.7E-06 60.2 11.2 38 36-79 9-46 (597)
476 PRK12724 flagellar biosynthesi 94.4 0.53 1.2E-05 54.1 13.4 84 221-310 300-392 (432)
477 KOG0780 Signal recognition par 94.2 1.3 2.9E-05 49.6 15.4 87 221-310 184-273 (483)
478 PRK14493 putative bifunctional 94.1 0.054 1.2E-06 59.0 4.6 36 37-79 1-36 (274)
479 TIGR03811 tyr_de_CO2_Ent tyros 93.9 5.8 0.00013 48.1 21.5 40 442-482 122-161 (608)
480 TIGR03499 FlhF flagellar biosy 93.7 0.22 4.8E-06 54.5 8.3 36 37-78 194-231 (282)
481 PRK14723 flhF flagellar biosyn 92.9 1.3 2.9E-05 54.5 14.1 84 221-310 264-356 (767)
482 KOG2749 mRNA cleavage and poly 92.6 0.5 1.1E-05 52.4 8.9 36 37-78 103-138 (415)
483 PF10662 PduV-EutP: Ethanolami 92.6 3.2 6.9E-05 40.8 13.7 60 242-302 81-142 (143)
484 COG0403 GcvP Glycine cleavage 92.4 25 0.00054 40.4 24.0 206 617-849 208-447 (450)
485 COG0378 HypB Ni2+-binding GTPa 92.3 0.56 1.2E-05 48.1 8.3 33 39-78 15-47 (202)
486 KOG3846 L-kynurenine hydrolase 92.0 8.1 0.00018 42.2 16.7 218 616-854 211-463 (465)
487 COG1419 FlhF Flagellar GTP-bin 92.0 1.8 3.8E-05 49.4 12.5 81 221-310 282-371 (407)
488 PF01695 IstB_IS21: IstB-like 92.0 0.18 3.8E-06 51.5 4.3 36 37-78 47-82 (178)
489 PRK08506 replicative DNA helic 91.8 1.1 2.5E-05 52.7 11.4 35 39-78 193-227 (472)
490 PRK06995 flhF flagellar biosyn 91.7 1.6 3.6E-05 51.2 12.3 35 38-77 257-292 (484)
491 COG0552 FtsY Signal recognitio 91.5 3.1 6.6E-05 46.3 13.4 33 39-77 141-173 (340)
492 PRK14722 flhF flagellar biosyn 91.1 5.1 0.00011 45.7 15.1 87 221-310 216-314 (374)
493 PRK10751 molybdopterin-guanine 90.9 0.34 7.4E-06 49.1 5.0 36 37-78 6-41 (173)
494 PRK09165 replicative DNA helic 90.6 1.3 2.8E-05 52.5 10.3 40 39-78 218-267 (497)
495 PF01583 APS_kinase: Adenylyls 90.3 0.33 7E-06 48.4 4.2 34 39-78 4-37 (156)
496 PF02374 ArsA_ATPase: Anion-tr 90.2 0.32 6.9E-06 53.9 4.5 64 252-316 209-289 (305)
497 PRK06731 flhF flagellar biosyn 90.2 5.2 0.00011 43.6 13.6 35 38-78 76-110 (270)
498 PRK15453 phosphoribulokinase; 90.0 0.41 8.9E-06 52.1 5.0 40 33-78 1-40 (290)
499 PRK06749 replicative DNA helic 89.8 2.2 4.7E-05 49.6 11.1 35 39-78 187-221 (428)
500 PRK14489 putative bifunctional 89.8 0.4 8.6E-06 54.6 4.9 38 36-79 204-241 (366)
No 1
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=100.00 E-value=4e-128 Score=1158.67 Aligned_cols=796 Identities=62% Similarity=1.005 Sum_probs=658.9
Q ss_pred CCCCCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccC
Q 002941 26 FHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRN 105 (863)
Q Consensus 26 ~~~~~~~~~~~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~ 105 (863)
++.....++++.+++||||||||||||+||++|++++. ++|.+|.|+||||||++.++|+.++.+.+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~fI~GtnT~VGKT~vS~~L~~~~~-----~~g~~~~y~KPvqTG~~~~~Da~~v~~~~~~~~~~-- 88 (817)
T PLN02974 16 SSSAAGALPLSCPAFAVWGANTAVGKTLVSAGLAAAAA-----SRRSPVLYVKPVQTGFPDDSDARFVFRKADSLSRR-- 88 (817)
T ss_pred CCcccccccCCCceEEEEECCCCCCHHHHHHHHHHHHH-----HcCCceEEEEEEECCCCCCccHHHHHHhhhccccc--
Confidence 34467778889999999999999999999999999999 89999999999999999899999998875443222
Q ss_pred CCccccccchhhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHh
Q 002941 106 FPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAE 185 (863)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~ 185 (863)
-.++..+|+.|.+++.+. +.+.....+.. +++-.|+ ...+.....+..+.++|.|++|+|||+|++
T Consensus 89 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~------g~~~~~~~~~~~~~~~~~~~~p~SPhlAA~ 154 (817)
T PLN02974 89 -SESLFASNRTLFLSPPAA-KSALGGVSSMG------AHAAVNA------GAEAGVTSSALWCHTLFAWRRAVSPHLAAR 154 (817)
T ss_pred -cccccccccccccccccc-ccccccccccc------ccccccc------ccccccccccccccCceecCCCCCHHHHHH
Confidence 245677899999888877 33322222222 1111111 111111234456789999999999999999
Q ss_pred hhcCCCCChhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHH
Q 002941 186 RESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGIS 265 (863)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~ 265 (863)
++ +..+++++|.+.++++++++ ++.+..+.+|++|||||||++||++++.+++||++.+++|||||++.+||+||
T Consensus 155 ~e-g~~i~~~~i~~~~~~~l~~~----~~~~~~~~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l~lPvILV~~~~LG~IN 229 (817)
T PLN02974 155 RE-GRGVSDDEVLEAVNRSLREV----GANESGGGRVLALVETAGGVASPGPSGTLQCDLYRPLRLPAILVGDGRLGGIS 229 (817)
T ss_pred Hh-CCCCCHHHHHHHHHHHHHhh----hcccccccCCeEEEECCCcccccCCCCCCHHHHHHHhCCCEEEEECCCCCHHH
Confidence 99 99999999999998866543 11122345799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEEEcCCCCCCHHHHHHhhcCCCCeeecCCCCCCCchhhhhhhhhccchHHHHHHHHHHHHHH
Q 002941 266 GTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSE 345 (863)
Q Consensus 266 ~~~~~~~~~~~~~~~v~gvi~n~~~~~~~~~~~~~~~~~~pvl~~p~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~~ 345 (863)
||++++++|+.||++|.|||+|+...+|..+|++++++++||+++|+.|.....++.+|++...+.+..+++.+.+++.+
T Consensus 230 htllt~eaL~~rGi~v~gii~~~~~~~N~~~l~~~~~~~~pv~~lp~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (817)
T PLN02974 230 ATLAAYESLLLRGYDVVAVVIEDHGLSNEKALLSYLSNRVPVFVLPPVPEDPGDDLDEWFDDSKSTFDALLDALQSWHSG 309 (817)
T ss_pred HHHHHHHHHHHCCCCEEEEEEeCCccchHHHHHHHHhcCCcEEeCCCCCCCcchhHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999888999999999988999999999999888889999999999999999999999999
Q ss_pred HhHhhcChhhhhcccccccCCCCCCCCCCCeEEEEeecccce----EEEEcCCCcccceEEeeecccccccCCCCCcHHH
Q 002941 346 RIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENF----SVYQDQKNKFIGQQFDACASWWTQGPDATLQIEL 421 (863)
Q Consensus 346 r~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~----~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V 421 (863)
|.+++..|.+++++++|||||++..+...++.+|++ ++|. |++|.+|+..+.+|||+++|||++++||++||+|
T Consensus 310 r~~~~~~~~~~a~~~iw~Pftq~~~~~~~~~~vi~~--a~G~~~~~~~~d~~G~~~~~~ylD~~sg~w~~~lG~h~~p~I 387 (817)
T PLN02974 310 RLQRLQSMPKEAGEVLWWPFTQHALVPRDSVTVIDS--RCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTLQPEL 387 (817)
T ss_pred HhHHHHHHHHHHhhhccCCcccccccCCCCceEEEe--eecCceeEEEECCCCCcccceEEEcchhHHHhCCCcCCCHHH
Confidence 999999999999999999999998876667899998 5666 9999998523458999999999999996589999
Q ss_pred HHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCcc
Q 002941 422 ARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTT 501 (863)
Q Consensus 422 ~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~ 501 (863)
++|+++|++++.|+++..+.|+++.+|||+|++..|.+++++|||++|||||||+|||||+|+|+.++|++++..+.++.
T Consensus 388 ~~Ai~~Qa~rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~~ 467 (817)
T PLN02974 388 ARAVAYAAGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRG 467 (817)
T ss_pred HHHHHHHHhhCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCccccccccc
Confidence 99999999999999877789999999999999966545578999999999999999999976687777753210000000
Q ss_pred ccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccc
Q 002941 502 EKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFC 581 (863)
Q Consensus 502 ~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~ 581 (863)
....|.+||++++||||.|+|+|++++.+.|++.+..+|+.+++.++++|.++++++.+++++|..++..... ...+|.
T Consensus 468 ~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~ 546 (817)
T PLN02974 468 GDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEG-EETTWE 546 (817)
T ss_pred ccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCccccccccc-cccccc
Confidence 0012489999999999999999999998878766556787777888888887766778888887654210000 000111
Q ss_pred cccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEec
Q 002941 582 SRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDE 661 (863)
Q Consensus 582 ~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DE 661 (863)
+..+.|+..++..++...+.+.+++.|++....+++++|||||+|||+||.||+++||++|+++|+++|++||++||+||
T Consensus 547 ~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DE 626 (817)
T PLN02974 547 SRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDE 626 (817)
T ss_pred cccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEee
Confidence 11122332223344556667888888875433345788999999996699999999999999999999999999999999
Q ss_pred ccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHH
Q 002941 662 VFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIK 741 (863)
Q Consensus 662 V~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~ 741 (863)
|+|||||||++|+++++|++|||+|+||+|||||+|+|++++++++++.|....+...+.|++||+|||++||||+|+|+
T Consensus 627 V~TGfGRtG~~fa~e~~gv~PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~ 706 (817)
T PLN02974 627 VFTGLWRLGVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQ 706 (817)
T ss_pred cccCCCcccchhhHHhcCCCCCEEeecccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999643222457899999999999999999999
Q ss_pred HhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEE
Q 002941 742 WFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMR 820 (863)
Q Consensus 742 ~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~ 820 (863)
+++++++.+++.++++++.+.|.+.+.+.+.++|.|++|||.|+|++|+|+++....++....+..+.+.|+ ++||+++
T Consensus 707 ~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r 786 (817)
T PLN02974 707 WYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYAR 786 (817)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEE
Confidence 999998889999999999998888876667789999999999999999998754233444456778899999 9999999
Q ss_pred ecCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 821 PLGNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 821 p~g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
+.|++++++||++++++++++++++|++.|
T Consensus 787 ~~Gnvi~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 787 PLGNVVYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred ecCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998876
No 2
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=100.00 E-value=1.4e-90 Score=771.27 Aligned_cols=436 Identities=31% Similarity=0.434 Sum_probs=377.8
Q ss_pred hcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc
Q 002941 357 AGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM 436 (863)
Q Consensus 357 ~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~ 436 (863)
+.+|+|||||++...... +.+|++ |+|+|+||.||+ +|||++|||||+++|| +||+|++|+++|++++.|++
T Consensus 9 d~~~~whP~t~~~~~~~~-~~~i~~--aeG~yl~d~~G~----r~lDg~sg~W~~~~Gh-~~~~i~~Ai~~Q~~~l~~~~ 80 (449)
T COG0161 9 DLSHLWHPFTQMRDPLAE-PRVIVR--AEGVYLTDIDGR----RYLDGMSGLWCVNHGH-GRPEIAEAIKKQLDKLPHVM 80 (449)
T ss_pred hhhheecccccccccccc-ceeeee--cceeEEEeCCCC----EEEecccHHHHhhcCc-CCHHHHHHHHHHHHhCCchh
Confidence 889999999999876555 788887 899999999999 9999999999999999 89999999999999999998
Q ss_pred CCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCC
Q 002941 437 FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSY 516 (863)
Q Consensus 437 ~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sY 516 (863)
+.++++.|+++||++|++++|++.+++|||++|||||||+||||| ++||+.+|++ + |++||+++++|
T Consensus 81 ~~~~t~~Pa~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma-~qY~~~~G~p-~-----------r~~~Isr~~gY 147 (449)
T COG0161 81 FGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMA-LQYWRARGQP-Q-----------RKKFISRRNGY 147 (449)
T ss_pred hcccCCchHHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHH-HHHHHhcCCC-c-----------ceEEEEeccCc
Confidence 888899999999999999999544899999999999999999999 5799999875 2 38899999999
Q ss_pred ccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhH
Q 002941 517 HGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDL 596 (863)
Q Consensus 517 HG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 596 (863)
||.|++++|+++....++. +++++. ++++|++.|+.|+.. .++. .+ .+.
T Consensus 148 HG~T~ga~Sv~g~~~~~~~-----------~~~~ll----~~~~~~~~P~~y~~~--------------~~~~-~~-~~~ 196 (449)
T COG0161 148 HGDTLGAMSVGGPVALRHA-----------FYDPLL----PEVLHLPAPYAYRRG--------------FFGE-GD-EEF 196 (449)
T ss_pred CcccchheeccCchhhhhh-----------hccccc----cCceecCCCcccccC--------------CCCC-Ch-HHH
Confidence 9999999999995543321 111111 356678888665311 0011 11 122
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhh
Q 002941 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (863)
Q Consensus 597 ~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e 676 (863)
..+++.+|+.++ ..++++|||||+|||+|+.||+++||++||+++|++|++||||||+|||.|||||||++||++
T Consensus 197 -~~~a~~le~~i~----~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e 271 (449)
T COG0161 197 -AEAADELEALIL----EHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACE 271 (449)
T ss_pred -HHHHHHHHHHHH----hcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhh
Confidence 344566666665 467799999999999777799999999999999999999999999999999999999999999
Q ss_pred hcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHH
Q 002941 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (863)
Q Consensus 677 ~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~ 756 (863)
++|++|||+|+||||+|||+|+||++++++|++.|.... ...|+||+||+|||++||||+|+|+++++++|++++.+.+
T Consensus 272 ~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~-~~~f~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~ 350 (449)
T COG0161 272 HAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGD-AGAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIG 350 (449)
T ss_pred hcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhccc-CCeeccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999999999999999999999998764 5789999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCc
Q 002941 757 RILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSS 835 (863)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t 835 (863)
.++.+.| .+.+..+|.|++|||.|+|.+||++.+. ++.+|......++.+.++++||++||.|+.+.++||+++|
T Consensus 351 ~~l~~~L----~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~g~~i~~~PPliit 426 (449)
T COG0161 351 AYLQAGL----QAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPLGDVIYLMPPLIIT 426 (449)
T ss_pred HHHHHHH----HHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEeecCCEEEEcCCccCC
Confidence 8887755 4446788999999999999999999875 4555655567789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002941 836 PEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 836 ~eeid~~v~~L~~~l~~l~ 854 (863)
++|||++++++.+++++..
T Consensus 427 ~~eid~l~~~l~~al~~~~ 445 (449)
T COG0161 427 REEIDELVDALREALDETL 445 (449)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 3
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-81 Score=681.53 Aligned_cols=376 Identities=28% Similarity=0.368 Sum_probs=331.5
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
++++++ |+|+|+||.+|+ +||||.+|++++++|| +||.|++|+++|++++.|.+ +.|.+++..+|+++|++.
T Consensus 25 ~~~~~~--G~G~~v~D~~G~----~YlDf~~Giav~~lGH-~hP~iv~al~~Q~~kl~h~s-n~~~~~~~~~la~~L~~~ 96 (404)
T COG4992 25 PVVIVR--GEGAYVWDQQGR----EYLDFAAGIAVNNLGH-CHPALVEALKEQAEKLWHVS-NLFYNEPQAELAEKLVEL 96 (404)
T ss_pred ceeEEe--ccccEEECCCCC----EeeeeccceeeeccCC-CCHHHHHHHHHHHHHhhhcc-cccCChHHHHHHHHHHhh
Confidence 356665 899999999999 9999999999999999 99999999999999999986 568999999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
+| . .++|||+|||+||||+|||+| |+|+. + .+ |.+||+|.+||||+|++++|+|+++.|+..
T Consensus 97 s~-~-~d~vff~NSGaEA~EaAiKlA-Rk~~~--~--~~-----------k~~Iia~~nsFHGRT~galS~t~~~ky~~~ 158 (404)
T COG4992 97 SP-F-ADRVFFCNSGAEANEAALKLA-RKYTG--D--PE-----------KSKIIAFENSFHGRTLGALSATGQPKYRKG 158 (404)
T ss_pred Cc-c-ccEEEEcCCcHHHHHHHHHHH-HHHcC--C--CC-----------CcEEEEEcCCcCCccceeeeccCChhhccC
Confidence 98 3 789999999999999999999 67742 1 12 379999999999999999999999988754
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
|. |. + +++.++|+ +| .++++++++
T Consensus 159 F~--------Pl--~------~g~~~vpf--------------------------nD--------i~al~~ai~------ 182 (404)
T COG4992 159 FG--------PL--L------PGFRHVPF--------------------------ND--------IEALEAAID------ 182 (404)
T ss_pred CC--------CC--C------CCceecCC--------------------------CC--------HHHHHHHhc------
Confidence 31 11 1 23333332 34 355666664
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++||||+||| ||+||+++++++||+++|+||++||+|||+||||||+||||++|++||+|+.|||+|++|+||||
T Consensus 183 --~~taAvivEPI-QGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~tlaK~LgGG- 258 (404)
T COG4992 183 --EDTAAVIVEPI-QGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILTLAKALGGG- 258 (404)
T ss_pred --cCeEEEEEecc-cCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEEEeeccccCC-
Confidence 38999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+||||+++++.+++.+... .|++||+|||++||++.|+|+++.++++.+++++.+.++.+ +|.++..++|
T Consensus 259 ~PigA~la~~~~~~~~~~G------~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~----~L~~l~~~~~ 328 (404)
T COG4992 259 FPIGAMLATEEIASAFTPG------DHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQ----RLRELKRRYP 328 (404)
T ss_pred ccceeeEEchhhhhcCCCC------cccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH----HHHHHhhcCC
Confidence 8999999998778877653 59999999999999999999999999999998888888877 4466778899
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.|.+|||+|+|+++++..+. .+..+.+.|+++||++.+.+ +++||.||+++++||||+++++|++++..+.
T Consensus 329 ~v~~vRG~GLmiGiel~~~~--------~a~~~~~~~~~~gvL~~~a~~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~~ 400 (404)
T COG4992 329 LVKEVRGRGLMIGIELKEPY--------RARDIVRALREEGVLVLPAGPNVIRFLPPLVITEEEIDEALDALERALAAAS 400 (404)
T ss_pred ceeeeecceeEEEEEecCcc--------cHHHHHHHHHHCCeEEecCCCCeEEecCCccCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998752 36789999999999998765 8999999999999999999999999998765
Q ss_pred H
Q 002941 855 K 855 (863)
Q Consensus 855 ~ 855 (863)
.
T Consensus 401 ~ 401 (404)
T COG4992 401 A 401 (404)
T ss_pred h
Confidence 3
No 4
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-81 Score=699.43 Aligned_cols=405 Identities=25% Similarity=0.327 Sum_probs=348.0
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ ++|+|+||+||| +||||.+|+++.++|| |||+|++|+++|++++.|.+.....+++.++|||+|.+.
T Consensus 39 p~~~~r--a~G~~l~DvdG~----~ylDf~sgi~v~~~GH-~hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~~~ 111 (447)
T COG0160 39 PLVIVR--AEGAYLYDVDGN----EYLDFLSGIAVLNLGH-NHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTAL 111 (447)
T ss_pred cceEEe--cccCEEEeCCCC----EEEEcccCcchhccCC-CCHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHh
Confidence 566776 788999999999 9999999999999999 999999999999999998765444559999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
+|...++++||+||||||||+|||+| |.| ||| ..||+|.++|||+|.+++++|+....++
T Consensus 112 ~p~~~~~~~~f~~sGaeA~E~AiKiA-r~~-------Tgr-----------~~viaf~~afHG~T~galslT~~~~~~~- 171 (447)
T COG0160 112 APGSGLKKVFFGNSGAEAVEAAIKIA-RAY-------TGR-----------PGVIAFDGAFHGRTLGALSLTGSKPPYK- 171 (447)
T ss_pred CCcccCCeEEecCCcHHHHHHHHHHH-HHH-------hCC-----------CcEEEECCcccccchhhHHhccCccccc-
Confidence 99733789999999999999999999 677 565 7899999999999999999998553321
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
.+++++ .+++.++|+|++|++ +|.... +++...+.+++++.+... ..
T Consensus 172 ------~~~~~~--------~~~v~~~Pyp~~yr~---------------p~~~~~--~~~~~~~~~~~e~~i~~~--~~ 218 (447)
T COG0160 172 ------AGFGPL--------PPGVYHVPYPNPYRC---------------PFGIGG--EECGDDALEYIERALFDL--EV 218 (447)
T ss_pred ------cCCCCC--------CCCeEEecCCccccC---------------cccCch--hhhhHHHHHHHHHHHHhh--cC
Confidence 222222 245788999988752 222111 234444566777766542 45
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++++||||+||| ||+||+++||++||++|+++|+|||++||+|||||||||||+||++||+|+.|||+|+||+|+||
T Consensus 219 ~~~~vAaiI~EpI-QgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~aK~ig~G- 296 (447)
T COG0160 219 GPEEVAAIIIEPI-QGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSLGGG- 296 (447)
T ss_pred CCCceeEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEecccccCC-
Confidence 6789999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|+|++++++++.... .|++||+|||++||||+|+|++++++++.+++.+.++++++ +|.++.+++|
T Consensus 297 ~Pl~avv~r~ei~~~~~g-------~~~~Tf~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~----~L~~l~~~~~ 365 (447)
T COG0160 297 LPLSAVVGRAEIMDWPPG-------GHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRD----RLEELQEKHP 365 (447)
T ss_pred CceeEEeccHHhcccCCc-------ccCCCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH----HHHHHHhhcC
Confidence 899999999999994432 48999999999999999999999888887877777777776 5577889999
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.|++|||+|+|++||++++.....+....+..+...|+++||++..+| |++||.||+++|+|++|+.+++|+++|.+
T Consensus 366 ~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G~~~nviRi~PPL~is~e~~d~~l~il~~al~~ 445 (447)
T COG0160 366 LIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDILEEALKE 445 (447)
T ss_pred ceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEeccCCCCcEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 999999999999999998754444666788999999999999998765 99999999999999999999999999976
Q ss_pred H
Q 002941 853 F 853 (863)
Q Consensus 853 l 853 (863)
+
T Consensus 446 ~ 446 (447)
T COG0160 446 A 446 (447)
T ss_pred h
Confidence 4
No 5
>PRK07482 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-76 Score=683.29 Aligned_cols=441 Identities=20% Similarity=0.238 Sum_probs=359.9
Q ss_pred cChhhhhcccccccCCCCCCCCC--CCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHH
Q 002941 351 CDMPKRAGELFWWPFTQHKLVPE--EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYT 428 (863)
Q Consensus 351 ~~~~~~~~~~l~~p~~~~~~~~~--~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q 428 (863)
+.+.+++.+++|||++++..+.+ ..|++|++ |+|+|+||.||| +|||+.+|+|++++|| +||+|++|+++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~--a~G~~l~D~dG~----~ylD~~sg~~~~~lGh-~~p~v~~Av~~q 78 (461)
T PRK07482 6 DELLAWDRDHFFHPSTHLGDHARGELPGRIVEG--GEGIRITDAQGR----RYIDAFAGLYCVNVGY-GRTEVAEAIAEQ 78 (461)
T ss_pred HHHHHhhhhhccCCcccccccccccCCCeeEEe--eeeeEEEECCCC----EEEEcccchhhhcCCC-CCHHHHHHHHHH
Confidence 34455667789999987754432 24678876 788999999999 9999999999999999 899999999999
Q ss_pred HHhcccccC-CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCcccccccc
Q 002941 429 AARFGHVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL 507 (863)
Q Consensus 429 ~~~~~~~~~-~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~ 507 (863)
++++.+... ..+.+++..+|||+|++.+|.+ +++|+|+||||||||+|||+| |+|+..+|. ++| +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGSEAve~AlKlA-r~~~~~~g~-~~r-----------~ 144 (461)
T PRK07482 79 AKELAYYHTYVGHGTEASITLSKRIIDRAPAG-MSKVYYGLSGSDANETQIKLV-WYYNNVLGR-PEK-----------K 144 (461)
T ss_pred HHhcCccccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCchHHHHHHHHHHH-HHHHHhcCC-CCC-----------c
Confidence 999876542 3578999999999999999865 689999999999999999999 678766554 343 8
Q ss_pred EEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchh
Q 002941 508 KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587 (863)
Q Consensus 508 ~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~ 587 (863)
+||+|+++|||+|.+++++++.+.|+.. +++ +. .++.++++|++++... .
T Consensus 145 ~Ii~~~~~YHG~t~ga~s~~~~~~~~~~--------~~~----~~----~~~~~~~~p~~~~~~~--------------~ 194 (461)
T PRK07482 145 KIISRWRGYHGSGVVTGSLTGLSLFHQH--------FDL----PI----ARVLHTEAPHYYRRAD--------------A 194 (461)
T ss_pred eEEEecCccCCccHhhhhccCCchhhhc--------cCC----CC----CCCEEcCCCccccccc--------------c
Confidence 9999999999999999999986655432 111 11 2345666665442100 0
Q ss_pred hcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccccc
Q 002941 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667 (863)
Q Consensus 588 ~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfG 667 (863)
+. ..+.+...+.+.+++.+++ .++++|||||+||| ||++|+++||++||++|+++|++||+|||+|||+||||
T Consensus 195 ~~--~~~~~~~~~~~~l~~~~~~----~~~~~iAAvi~EPv-qg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfG 267 (461)
T PRK07482 195 GM--SEEQFSAYCADELEELILA----EGPDTIAAFIAEPV-LGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFG 267 (461)
T ss_pred CC--CHHHHHHHHHHHHHHHHHh----cCCCcEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Confidence 00 0012333456677777742 34678999999998 99999999999999999999999999999999999999
Q ss_pred ccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCC-ccceeecccCCCccHHHHHHHHHHHHHhcCh
Q 002941 668 RLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDP 746 (863)
Q Consensus 668 RtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~-~~~~~~~~~T~~~~pla~AAalAaL~~l~~~ 746 (863)
|||++|+++++|++|||+|+||+|+|||+|+|++++++++++.+.... ....+.|++||+|||++||||+|+|++++++
T Consensus 268 RtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~ 347 (461)
T PRK07482 268 RLGSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERE 347 (461)
T ss_pred cCcchhhHHhcCCCCCEEEEccccccCccccceeeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999889999999999999886321 1224579999999999999999999999998
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCc-CCCCch--HHHHHHHHHHHHCCcEEEec-
Q 002941 747 QTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC-NAGYGS--LYAASLLKKLREDGVYMRPL- 822 (863)
Q Consensus 747 ~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~-~~~~~~--~~~~~l~~~l~e~GV~~~p~- 822 (863)
++.+++.+.++++.+.| .++.+++|.|.+|||.|+|++++|.++.. +.++.. ..+..++..|+++||++++.
T Consensus 348 ~l~~~~~~~g~~l~~~L----~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~ 423 (461)
T PRK07482 348 NLVGNAAEVGAYFRARL----RAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAMP 423 (461)
T ss_pred CHHHHHHHHHHHHHHHH----HHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCC
Confidence 88888888888777644 56678899999999999999999986431 222222 24578899999999999754
Q ss_pred -CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 823 -GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 823 -g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
++++++.||+++|++|||+++++|+++++++
T Consensus 424 ~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 424 HGDILGFAPPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999876
No 6
>PRK07481 hypothetical protein; Provisional
Probab=100.00 E-value=2.7e-76 Score=679.44 Aligned_cols=438 Identities=24% Similarity=0.339 Sum_probs=361.6
Q ss_pred hhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccc
Q 002941 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (863)
Q Consensus 355 ~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~ 434 (863)
+.+++++||||+++..+....|.++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++.+
T Consensus 4 ~~~~~~~w~p~~~~~~~~~~~p~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~~~~ 76 (449)
T PRK07481 4 SNNARRFWHPMAHPAEMKARPPIIIVR--GDGVYVYDIDGK----KLLDGVGGLWNVNVGH-NREEVKEAIVRQLDELEY 76 (449)
T ss_pred ccccccccCCcccccccccCCCceEEe--ccccEEEeCCCC----EEEECchhHHhhcCCC-CCHHHHHHHHHHHHhccc
Confidence 356788999999997765446778877 889999999999 9999999999999999 899999999999999887
Q ss_pred ccC-CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEec
Q 002941 435 VMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (863)
Q Consensus 435 ~~~-~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~ 513 (863)
.+. .++.+++..+|||+|++++|.+.+++|+|++|||||||+|||+| |.|++.+|+ +|| ++||+|+
T Consensus 77 ~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklA-r~~~~~~g~-~~r-----------~~ii~~~ 143 (449)
T PRK07481 77 YSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLA-RQYWKVRGQ-PER-----------TKFISLK 143 (449)
T ss_pred eecccccCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHH-HHHHHhcCC-CCC-----------cEEEEEC
Confidence 643 35689999999999999985333789999999999999999999 678766665 343 8899999
Q ss_pred CCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCc
Q 002941 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (863)
Q Consensus 514 ~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 593 (863)
++|||+|.+++++++...++..+ .+. .+++.+++.|+.++ ++|+. +|.
T Consensus 144 ~~yHG~t~ga~s~~~~~~~~~~~--------~~~--------~~g~~~~~~~~~~~---------------~~~~~-~d~ 191 (449)
T PRK07481 144 QGYHGTHFGGASVNGNTVFRRNY--------EPL--------LPGCFHVETPWLYR---------------NPFTE-QDP 191 (449)
T ss_pred CCcCCcchhhhccCCCccccccc--------CCC--------CCCCEEeCCCcccc---------------cccCC-CCH
Confidence 99999999999998866554211 111 13455566665431 11210 122
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc
Q 002941 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (863)
Q Consensus 594 ~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~ 673 (863)
+.+...+.+.+|+.+.. .++++|||||+||| ||++|+++||++||++|+++|++||+|||+|||+|||||||++|
T Consensus 192 ~~~~~~~~~~le~~i~~----~~~~~iAAviiEPv-qg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~ 266 (449)
T PRK07481 192 EELARICARLLEREIAF----QGPDTIAAFIAEPV-QGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWF 266 (449)
T ss_pred HHHHHHHHHHHHHHHHh----cCCCcEEEEEEecc-cCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhh
Confidence 33444555666766642 35678999999998 99999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCc-cceeecccCCCccHHHHHHHHHHHHHhcChhhHHhH
Q 002941 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (863)
Q Consensus 674 a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~-~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l 752 (863)
+++++|++|||+|+||+|+|||+|+|++++++++++.+..... ...+.|++||+|||++|||++++|++++++++.+++
T Consensus 267 a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~ 346 (449)
T PRK07481 267 GSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANA 346 (449)
T ss_pred HhhhcCCCCCEEEEeecccCCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999999999999998999999999999999864321 123579999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCc-CCCCc--hHHHHHHHHHHHHCCcEEEecCCEEEEe
Q 002941 753 IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC-NAGYG--SLYAASLLKKLREDGVYMRPLGNVIYLM 829 (863)
Q Consensus 753 ~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~-~~~~~--~~~~~~l~~~l~e~GV~~~p~g~~lr~~ 829 (863)
.+.++++++.| .++.+++|.|.+|||.|+|++++|..+.. +.+.. ......+...|+++||++.+.|+.++++
T Consensus 347 ~~~g~~l~~~L----~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g~~i~l~ 422 (449)
T PRK07481 347 AKRGAYLLEGL----QPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPSGTKIILS 422 (449)
T ss_pred HHHHHHHHHHH----HHHhhcCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEecCCEEEEE
Confidence 88888887754 45566789999999999999999975431 22211 2356778899999999999988889999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 830 CGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 830 ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
||+++|++|||+++++|+++++++
T Consensus 423 Ppl~it~~eid~~~~~l~~~l~~~ 446 (449)
T PRK07481 423 PPLVIQREDVDRIVDALDAGLSAV 446 (449)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999764
No 7
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=8.1e-76 Score=676.97 Aligned_cols=439 Identities=29% Similarity=0.449 Sum_probs=356.9
Q ss_pred hhhhhcccccccCCCCCCCCC-CCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHh
Q 002941 353 MPKRAGELFWWPFTQHKLVPE-EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~-~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~ 431 (863)
+.+.+.+++|+|++++..... .++..|++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~i~~Ai~~q~~~ 95 (472)
T PRK08742 23 WRQRDLAVLWHPCTQMREHPHTLPLVPIAR--GEGAWLVGHDGR----RYLDAVSSWWTNLFGH-AEPRIGAAIAAQAGE 95 (472)
T ss_pred HHHhhhcccccCCcccccccccCCCeeEEe--cccCEEEeCCCC----EEEEcCccHHhccCCC-CCHHHHHHHHHHHHh
Confidence 445566789999988643321 13456665 899999999999 9999999999999999 899999999999999
Q ss_pred cccccCCCCCChHHHHHHHHHHhhcCC----CCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCcccccccc
Q 002941 432 FGHVMFPENVYEPALECAELLLQGVGK----GWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL 507 (863)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~p~----~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~ 507 (863)
+.+.....+.+++..+|+++|++.+|. +++++|+|+||||||||+|||+| |.|+..+|+ ++| +
T Consensus 96 l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlA-r~~~~~~g~-~~r-----------~ 162 (472)
T PRK08742 96 LEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMA-FHYFHNRGE-HRR-----------T 162 (472)
T ss_pred CCCccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHH-HHHHHhcCC-CCC-----------c
Confidence 887765567899999999999999874 23679999999999999999999 677766665 343 8
Q ss_pred EEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchh
Q 002941 508 KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587 (863)
Q Consensus 508 ~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~ 587 (863)
+||+|+++|||+|.+++++++.+.++.. +.++. +++.++++|+.++.. +
T Consensus 163 ~ii~~~~syHG~t~gals~~~~~~~~~~--------~~p~~--------~~~~~~~~p~~~~~~---------------~ 211 (472)
T PRK08742 163 RFIALENGYHGETIGALAVGDIPLYRRV--------YAPLL--------LESLFAPSPDAYLAE---------------P 211 (472)
T ss_pred EEEEECCCcCCCchhhhhccCCcccccc--------cCCCC--------CCCEEeCCCCccccc---------------c
Confidence 9999999999999999999886655431 11111 234556777554211 1
Q ss_pred hcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccccc
Q 002941 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667 (863)
Q Consensus 588 ~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfG 667 (863)
+. ........+.+.+++.++. ++++|||||+||++||+||+++||++||++|+++|++||++||+|||+||||
T Consensus 212 ~~--~~~~~~~~~~~~l~~~~~~-----~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfG 284 (472)
T PRK08742 212 GQ--SAEDYALQAADALQALFEQ-----SPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFG 284 (472)
T ss_pred CC--CHHHHHHHHHHHHHHHHHh-----CCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence 10 0112233345667777652 4678999999994499999999999999999999999999999999999999
Q ss_pred ccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChh
Q 002941 668 RLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ 747 (863)
Q Consensus 668 RtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~ 747 (863)
|||++|+++++|+.|||+|+||+|||||+|+|++++++++++.+........+.|++||+|||++|||++|+|+++++++
T Consensus 285 RtG~~~a~e~~gv~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~ 364 (472)
T PRK08742 285 RTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDD 364 (472)
T ss_pred CCccchHHHhcCCCCCEEEEcccccCCCCCcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999988999999999999988642222346799999999999999999999999988
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCc-CCCCc--hHHHHHHHHHHHHCCcEEEecCC
Q 002941 748 TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC-NAGYG--SLYAASLLKKLREDGVYMRPLGN 824 (863)
Q Consensus 748 l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~-~~~~~--~~~~~~l~~~l~e~GV~~~p~g~ 824 (863)
+.+++.+.++++++. .+.++++|.|++|||.|+|++|+|..+.. +.++. ...+..+.+.|+++||++++.|+
T Consensus 365 l~~~~~~~g~~l~~~-----~~~~~~~~~i~dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~ 439 (472)
T PRK08742 365 VIARNQPTAARMTQL-----AAQIGEHPHVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPLGD 439 (472)
T ss_pred HHHHHHHHHHHHHHH-----HHHHhcCCCeeeEeccceEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeEEEecCC
Confidence 888888888877643 33456789999999999999999986431 22222 23456788999999999999999
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 825 VIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 825 ~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+++|.||+++|++|||+++++|+++|+++.
T Consensus 440 vi~~~PpL~it~~ei~~~~~~l~~~l~~~~ 469 (472)
T PRK08742 440 VLYWMPPYCVDEAQLALLADTTRHAIDEAV 469 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999997653
No 8
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-77 Score=634.25 Aligned_cols=397 Identities=24% Similarity=0.287 Sum_probs=340.1
Q ss_pred CeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHh
Q 002941 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (863)
Q Consensus 375 ~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (863)
.|++|++ |+|.||||.+|+ +|||+.+|+|++++|| |||+|++|+.+|+.++.|.+ ..+.|++..+|||+|++
T Consensus 32 ~Pl~Iv~--~~~~ylyDe~G~----ryLD~f~Gi~tvslGH-chP~v~~a~~kQl~~l~H~t-~~~~~~pi~~~Ae~L~s 103 (442)
T KOG1404|consen 32 KPLVIVR--GEGQYLYDEEGR----RYLDAFGGIVTVSLGH-CHPDVVAAAVKQLKKLYHTT-SGYLNPPIHDLAEALVS 103 (442)
T ss_pred CCceEEe--cceEEEEcCCCc----eeehhhCCeEEEEcCC-CChHHHHHHHHhhhhhEEee-ccccCCcHHHHHHHHHH
Confidence 4678877 788999999999 9999999999999999 99999999999998888765 57899999999999999
Q ss_pred hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 455 ~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
.+|.+ +.++||+||||||||.||||| |.| +|+ .+||+++++|||.|..++++|+.+.++.
T Consensus 104 ~~P~~-l~~vfF~nsGsEANelal~ma-r~Y-------t~~-----------~diIa~r~~YHG~t~~t~glt~~~~~k~ 163 (442)
T KOG1404|consen 104 KLPGD-LKVVFFVNSGSEANELALKMA-RLY-------TGN-----------LDIIARRNSYHGNTLYTLGLTGLSPWKQ 163 (442)
T ss_pred hCCCC-ceEEEEecCCchHHHHHHHHH-HHh-------cCC-----------ceEEEeeccccCCchhhcccccCCcccc
Confidence 99976 889999999999999999999 677 353 7999999999999999999999777663
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
++ |.+ ..++.|...|+.|+. +|+..+ .++..+.+. +.+++++..
T Consensus 164 ~~--------------~~~--~~~~~~~~~Pdp~r~---------------~~~~~~-~~e~~d~~a----~~l~d~i~~ 207 (442)
T KOG1404|consen 164 NF--------------PGV--ASGVHHTMNPDPYRG---------------IFGGSN-EEEASDRYA----KELEDLILY 207 (442)
T ss_pred cC--------------CCC--CCcccccCCCCcccc---------------cCCCCc-hhhhHHHHH----HHHHHHHHh
Confidence 21 111 136677888877643 232222 122333334 444454556
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
..++.|||||+||| ||.||++.+|++||++++++|+++|.++|+|||||||||||.+|+||+.|+.|||+|++|+||+|
T Consensus 208 ~~~~~vAafiaEtI-qGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGnG 286 (442)
T KOG1404|consen 208 DGPETVAAFIAETI-QGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGNG 286 (442)
T ss_pred cCCCceeEEEeehh-ccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCCCccHHHHHhhccCC
Confidence 77889999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|||||+++++|++.+.... .|.+||+|||++||+++|+|+++++++++++..+.+.+|.+ ++.++.++|
T Consensus 287 -~Pl~AVvtt~EIa~v~~~~~-----~~fnTyggnP~a~avg~aVL~Vikee~LqE~aa~vG~yl~~----~l~~l~d~h 356 (442)
T KOG1404|consen 287 -FPLGAVVTTPEIADVLNQKS-----SHFNTYGGNPVACAVGLAVLKVIKEENLQENAAEVGSYLLE----KLAALKDKH 356 (442)
T ss_pred -CcceeeecCHHHHHHHHhcc-----ccccccCCCchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHhhcC
Confidence 89999999999999998643 38899999999999999999999988777777776666665 557778899
Q ss_pred CCeeEecccceEEEEEEccCC-cCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAG-CNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~-~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L 846 (863)
|+|++|||+|+|+++|++++. ...+++......+...|.++|+++.-. |+++|+.||+++|+||||.+++..
T Consensus 357 ~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 357 PIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHGNVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred CceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeeecccccceEEEecCCeeccHHHHHHHHHHH
Confidence 999999999999999999876 234445566788999999999999753 599999999999999998888866
No 9
>PRK05965 hypothetical protein; Provisional
Probab=100.00 E-value=6.4e-76 Score=677.71 Aligned_cols=438 Identities=19% Similarity=0.237 Sum_probs=355.9
Q ss_pred hhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhc
Q 002941 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~ 432 (863)
+.+++.++.|+|++++.......+++|++ |+|+|+||.||| +|||+++|+|++++|| +||+|++|+++|++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~i~~Ai~~q~~~~ 78 (459)
T PRK05965 6 LIELDRAHLIHPVASYRGHEARGVTVLAS--AKGATLTDASGH----QLLDAFAGLWCVNVGY-GQESIVEAAAEQMREL 78 (459)
T ss_pred HHHhhhhccccccccccccccCCCceEEe--eeEeEEEECCCC----EEEECcccHHhccCCC-CCHHHHHHHHHHHHhc
Confidence 44556678899987653221123567776 788999999999 9999999999999999 8999999999999998
Q ss_pred ccccC-CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEE
Q 002941 433 GHVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (863)
Q Consensus 433 ~~~~~-~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~ 511 (863)
.+... ..+.+++..+|||+|++.+|.+ +++|+|+||||||||+|||+| |+|++.+|+ ++| ++||+
T Consensus 79 ~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGSEAve~AlKlA-r~~~~~~g~-~~r-----------~kii~ 144 (459)
T PRK05965 79 PYATGYFHFGSEPAIRLAAKLAERAPGS-LNHVYFTLGGSDAVDSAVRFI-RHYWNATGR-PSK-----------KQFIS 144 (459)
T ss_pred CCcccccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCChhHHHHHHHHHH-HHHHHhcCC-CCc-----------cEEEE
Confidence 77653 2467999999999999999855 789999999999999999999 678766664 243 88999
Q ss_pred ecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhccc
Q 002941 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (863)
Q Consensus 512 ~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (863)
|+++|||+|.+++++++.+.++.. +++.. +++.+++.|++|+. ++. +
T Consensus 145 ~~~~YHG~t~~a~s~t~~~~~~~~--------~~~~~--------~~~~~~~~~~~~~~---------------~~~--~ 191 (459)
T PRK05965 145 LERGYHGSSSVGAGLTALPAFHRG--------FDLPL--------PWQHKIPSPYPYRN---------------PVG--D 191 (459)
T ss_pred ecCCcCcccHHHHHhcCCchhhcc--------cCCCC--------CCCEEcCCCccccc---------------ccC--C
Confidence 999999999999999886554431 11111 12334555544321 111 1
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC
Q 002941 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (863)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~ 671 (863)
|.+++...+.+.+++.|+. .++++|||||+||| ||+||+++||++||++|+++|++||++||+|||+|||||||+
T Consensus 192 ~~~~~~~~~~~~l~~~i~~----~~~~~iAAvIvEPi-qg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~ 266 (459)
T PRK05965 192 DPQAIIAASVAALRAKVAE----LGADNVAAFFCEPI-QGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGP 266 (459)
T ss_pred ChHHHHHHHHHHHHHHHHh----cCCCceEEEEEecc-ccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCch
Confidence 2123334456677777753 34578999999997 999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCc-cceeecccCCCccHHHHHHHHHHHHHhcChhhHH
Q 002941 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNH 750 (863)
Q Consensus 672 ~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~-~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~ 750 (863)
+|+++++|++|||+|+||+|||||+|+|++++++++++.+..... ...+.|++||+|||++|||++|+|++++++++.+
T Consensus 267 ~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~ 346 (459)
T PRK05965 267 LFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLA 346 (459)
T ss_pred hhhHhhcCCCCCeEEechhhccCCcceeEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999999998899999999999998864211 1235799999999999999999999999988889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCc--hHHHHHHHHHHHHCCcEEEecC-CEE
Q 002941 751 NIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYG--SLYAASLLKKLREDGVYMRPLG-NVI 826 (863)
Q Consensus 751 ~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~--~~~~~~l~~~l~e~GV~~~p~g-~~l 826 (863)
++.+.++++.+.| .++ .++|.|++|||.|+|+++++..+. .+.++. ...+..+.+.|+++||++++.| +.+
T Consensus 347 ~~~~~g~~l~~~l----~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~g~~~i 421 (459)
T PRK05965 347 NGQKAGPRFAAGL----DAL-RAHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLVFRAFGDGVL 421 (459)
T ss_pred HHHHHHHHHHHHH----Hhh-ccCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEecCCcEE
Confidence 9888888888755 333 468999999999999999997543 122211 2356788999999999999877 789
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 827 YLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 827 r~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
++.||+++|++|||+++++|+++++++.
T Consensus 422 ~~~PpL~it~~ei~~~~~~l~~~l~~~~ 449 (459)
T PRK05965 422 GFAPALCCTEGEFDLIFERTRKTLDDVL 449 (459)
T ss_pred EEECCCcCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998864
No 10
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=4.1e-75 Score=669.50 Aligned_cols=434 Identities=25% Similarity=0.397 Sum_probs=356.6
Q ss_pred hhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhc
Q 002941 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~ 432 (863)
+.+++..++|+|+++........|++|++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~~ 86 (453)
T PRK06943 14 WVARSLRAVWHPCTQMKHHERLPLLPVAR--GEGAWLYDRDGR----RYLDAISSWWVNLFGH-ANPRINAALKDQLDTL 86 (453)
T ss_pred HHHHhhcccccCCcCccccccCCCceEEe--cccCEEEeCCCC----EEEEcchHHHHhcCCC-CCHHHHHHHHHHHHhc
Confidence 34556678999998764333234677776 889999999999 9999999999999999 8999999999999999
Q ss_pred ccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEe
Q 002941 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (863)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~ 512 (863)
.+.....+.+++..+|||+|++.+|.. +++|+|+||||||||+|||+| |+|+..+|. +|| ++||+|
T Consensus 87 ~~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGseAve~AlKlA-~~~~~~rg~-~~r-----------~~Ii~~ 152 (453)
T PRK06943 87 EHAMLAGCTHEPAIELAERLAALTGGT-LGHAFFASDGASAVEIALKMS-FHAWRNRGR-GDK-----------REFVCL 152 (453)
T ss_pred CCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCCHHHHHHHHHHH-HHHHHHhCC-CCC-----------CEEEEE
Confidence 887655678999999999999998854 579999999999999999999 567665665 343 789999
Q ss_pred cCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccC
Q 002941 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (863)
Q Consensus 513 ~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d 592 (863)
+++|||+|++++++++...|+..+ .+.+ .++.++++|+.++. .+...
T Consensus 153 ~~~yHG~t~gals~~~~~~~~~~~--------~~~~--------~~~~~~~~p~~~~~---------------~~~~~-- 199 (453)
T PRK06943 153 ANGYHGETIGALGVTDVALFKDAY--------DPLI--------RHAHVVASPDARGA---------------RPGET-- 199 (453)
T ss_pred CCCcCCCcHHhhcccCChhhhccc--------ccCC--------CCCEEECCCCcccc---------------ccCCC--
Confidence 999999999999999876655321 1111 12345666643310 11110
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc
Q 002941 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (863)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~ 672 (863)
.......+.+.+++.|++ ++++|||||+||++||++|+++||++||++|+++|++||++||+|||+|||||||++
T Consensus 200 ~~~~~~~~~~~l~~~l~~-----~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~ 274 (453)
T PRK06943 200 AADVAARALADVRRLFAE-----RAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTF 274 (453)
T ss_pred HHHHHHHHHHHHHHHHHh-----CCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcch
Confidence 012223345667777753 467999999999449999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhH
Q 002941 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (863)
Q Consensus 673 ~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l 752 (863)
|+++++|++|||+|+||+|+|||+|+|++++++++++.+........+.|++||+|||++||+++|+|++++++++.+++
T Consensus 275 fa~~~~gv~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~ 354 (453)
T PRK06943 275 FACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVLARN 354 (453)
T ss_pred hHHHhCCCCCCeEeeehhhccCcccceEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999998899999999999998864221223569999999999999999999999998888998
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCC
Q 002941 753 IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGP 832 (863)
Q Consensus 753 ~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl 832 (863)
.+.++++.+.| .++ .+++.|.+|||.|+|+++++..+. ......+..+...|+++||++.+.|+.++|.||+
T Consensus 355 ~~~G~~l~~~L----~~l-~~~~~v~~vrG~Gl~~gvel~~~~---~~~~~~~~~i~~~~~~~Gll~~~~g~~l~~~Ppl 426 (453)
T PRK06943 355 ARKSARLRAAL----APL-AAHPQVRHLRQRGTIFAFDVALDG---DAARTFSRRFFEAALERELLLRPIGTTVYLMPPY 426 (453)
T ss_pred HHHHHHHHHHH----HHH-hcCCCEEeEeccccEEEEEEccCC---CcchHHHHHHHHHHHHCCcEEEecCCEEEEeCCC
Confidence 88888888755 333 457889999999999999998432 1112346788999999999999988999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHH
Q 002941 833 CSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 833 ~~t~eeid~~v~~L~~~l~~l 853 (863)
++|++|||+++++|+++|+++
T Consensus 427 ~it~~eid~~~~~l~~al~~~ 447 (453)
T PRK06943 427 VLDDDEIAWLAERTRATLDAT 447 (453)
T ss_pred cCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876
No 11
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=100.00 E-value=1.7e-74 Score=670.28 Aligned_cols=441 Identities=21% Similarity=0.264 Sum_probs=358.7
Q ss_pred cccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccC-C
Q 002941 360 LFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF-P 438 (863)
Q Consensus 360 ~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~-~ 438 (863)
.+||||+++.......|.+|++ |+|+|+||+||+ +|||+++|+|++++|| +||+|++|+++|++++.+... .
T Consensus 56 ~~~~p~~~~~~~~~~~p~~i~~--~~G~~l~D~dG~----~ylD~~sg~~~~~lGh-~hp~v~~Av~~ql~~~~~~~~~~ 128 (504)
T PLN02760 56 DMLAPFTAGWQSTDLEPLVIEK--SEGSYVYDINGK----KYLDALAGLWCTALGG-SEPRLVAAATEQLNKLPFYHSFW 128 (504)
T ss_pred CcccCcccccccccCCCceEEe--eeeeEEEECCCC----EEEEcCcCHHhcccCC-CCHHHHHHHHHHHhhccceeccc
Confidence 4799999986554445677776 788999999999 9999999999999999 899999999999999876542 2
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.+++..+|||+|++.++...+++|+|+||||||||+|||+| |+|++.+|. ++ |++||+|+++|||
T Consensus 129 ~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlA-r~~~~~~g~-~~-----------r~~iI~~~~~yHG 195 (504)
T PLN02760 129 NRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLV-WYYNNALGR-PN-----------KKKFIARSKSYHG 195 (504)
T ss_pred ccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHH-HHHHHhcCC-CC-----------CcEEEEECCCccC
Confidence 4679999999999999864333679999999999999999999 677665554 23 3899999999999
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
+|++++++++.+.++..+ +++. +++.++++|.+|+.. +++ .+.+++..
T Consensus 196 ~t~~a~slsg~~~~~~~~------------~~~~----~~~~~~~~p~~~~~~------~~~----------~~~~~~~~ 243 (504)
T PLN02760 196 STLISASLSGLPALHQKF------------DLPA----PFVLHTDCPHYWRFH------LPG----------ETEEEFST 243 (504)
T ss_pred ChHhhhhccCChhhccCC------------CCCC----CCcEEeCCCcccccC------CCC----------CcHHHHHH
Confidence 999999998865543211 1111 234566666544210 000 11112223
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++++.+.. .+++++||||+||| ||++|+++||++||++|+++|++||++||+|||+|||||||++|+++++
T Consensus 244 ~~~~~le~~l~~----~~~~~iAAvI~EPv-~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~ 318 (504)
T PLN02760 244 RLADNLENLILK----EGPETIAAFIAEPV-MGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKY 318 (504)
T ss_pred HHHHHHHHHHHh----cCCCceEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhc
Confidence 344566666542 35678999999998 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCC-ccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHH
Q 002941 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERR 757 (863)
Q Consensus 679 gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~-~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~ 757 (863)
|++|||+||||+|||||+|+|++++++++++.+.... ....+.|++||++||++|||++|+|++++++++.++++++++
T Consensus 319 gv~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~ 398 (504)
T PLN02760 319 NIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKIAP 398 (504)
T ss_pred CCCCcEEEecccccCCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999999999999999999986421 122457999999999999999999999998889999999998
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCc-CCCC--chHHHHHHHHHHHHCCcEEEecCCEEEEecCCCC
Q 002941 758 ILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC-NAGY--GSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCS 834 (863)
Q Consensus 758 ~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~-~~~~--~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~ 834 (863)
++++.|. ++ .++|.|.+|||.|+|+++++.++.. .+.+ ....+..+.+.|+++||++.+.++.++++||+++
T Consensus 399 ~l~~~L~----~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~lrl~Ppl~i 473 (504)
T PLN02760 399 RFQDGIK----AF-SGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVAGDNIMMSPPLII 473 (504)
T ss_pred HHHHHHH----HH-hcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEecCCEEEEECCCCC
Confidence 8887663 33 6789999999999999999976531 1222 1234677899999999999998899999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002941 835 SPEVCSQLLLKLYQRLEEFDKVEEKLKS 862 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~~l~~~~~~~~~ 862 (863)
|++|||+++++|+++++++.+-..+||+
T Consensus 474 t~eeid~~~~~l~~al~~~~~~~~~~~~ 501 (504)
T PLN02760 474 TPEEVDELISIYGKALKATEERVAELKS 501 (504)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999998765555553
No 12
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=3e-74 Score=664.00 Aligned_cols=436 Identities=28% Similarity=0.432 Sum_probs=357.4
Q ss_pred hhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcc
Q 002941 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (863)
Q Consensus 354 ~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~ 433 (863)
.+++.++.|+|++....+.+.++.+|++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~l~ 80 (466)
T PRK07030 8 MQRDLKVLWHPCTQMKDHEQLPLIPIRR--GEGVWLEDFEGK----RYLDAVSSWWVNVFGH-ANPRINQRIKDQVDQLE 80 (466)
T ss_pred HhhhhcccccccccccccccCCCceEEe--eeccEEEECCCC----EEEEcchhHHhhcCCC-CCHHHHHHHHHHHHhcC
Confidence 4456778899988654332233456776 788999999999 9999999999999999 89999999999999988
Q ss_pred cccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEec
Q 002941 434 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (863)
Q Consensus 434 ~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~ 513 (863)
+.....+.+++..+|+|+|++.+|.+ +++|+|+||||||||+|||+| |.|+..+|. ++| ++||+|+
T Consensus 81 ~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGsEAve~AlKlA-r~~~~~~g~-t~r-----------~~ii~~~ 146 (466)
T PRK07030 81 HVILAGFSHEPVIELSERLVKITPPG-LSRCFYADNGSSAIEVALKMS-FHYWRNRGK-PRK-----------KRFVTLT 146 (466)
T ss_pred CccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHHhCC-CCC-----------cEEEEEC
Confidence 77655678999999999999998854 689999999999999999999 677666665 343 7899999
Q ss_pred CCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCc
Q 002941 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (863)
Q Consensus 514 ~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 593 (863)
++|||+|.+++++++...++..+ .+.. .++.++|+|++++.. ++. ..
T Consensus 147 ~~yHG~t~ga~s~~~~~~~~~~~--------~p~~--------~~~~~~p~~~~~~~~---------------~~~--~~ 193 (466)
T PRK07030 147 NSYHGETLAAMSVGDVALFTETY--------KPLL--------LDTIKVPSPDCYLRP---------------EGM--SW 193 (466)
T ss_pred CCcCcccHHHHhccCCccccccC--------CccC--------CCCEEcCCCCccccc---------------cCC--CH
Confidence 99999999999998866554321 1111 234566777654210 110 11
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc
Q 002941 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (863)
Q Consensus 594 ~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~ 673 (863)
......+.+.+++.+++ ++++|||||+||++||.||+++||++||++|+++|++||+|||+|||+|||||||++|
T Consensus 194 ~~~~~~~l~~le~~~~~-----~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~ 268 (466)
T PRK07030 194 EEHSRRMFAHMEQTLAE-----HHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMF 268 (466)
T ss_pred HHHHHHHHHHHHHHHHh-----CCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccch
Confidence 12233445667777753 4689999999993399999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCC-ccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhH
Q 002941 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (863)
Q Consensus 674 a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~-~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l 752 (863)
+++++|++|||+|+||+|+|||+|+|++++++++++.+.... ....+.|++||+|||++|||++|+|++++++++.+++
T Consensus 269 a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~ 348 (466)
T PRK07030 269 ACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENN 348 (466)
T ss_pred HHHhcCCCCCEEeeehhccCCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999999999999999889999999999999885321 1124679999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCc--hHHHHHHHHHHHHCCcEEEecCCEEEEe
Q 002941 753 IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYG--SLYAASLLKKLREDGVYMRPLGNVIYLM 829 (863)
Q Consensus 753 ~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~--~~~~~~l~~~l~e~GV~~~p~g~~lr~~ 829 (863)
++.++++++.| .++ .++|.|.+|||.|+|++|++..+. .+.++. ...+..+.+.|+++||++.+.++.++|.
T Consensus 349 ~~~G~~l~~~L----~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~i~~~ 423 (466)
T PRK07030 349 RALARRMAEAT----AHL-ADHPHVAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPLGSVVYFL 423 (466)
T ss_pred HHHHHHHHHHH----HHH-hcCCCEEEeEeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEecCCEEEEE
Confidence 88888888755 333 468999999999999999997643 122221 1234678899999999999988999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 830 CGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 830 ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
||+++|++|||+++++|+++++++
T Consensus 424 Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 424 PPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987
No 13
>PRK07678 aminotransferase; Validated
Probab=100.00 E-value=2.9e-74 Score=662.94 Aligned_cols=434 Identities=22% Similarity=0.280 Sum_probs=353.3
Q ss_pred ChhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHh
Q 002941 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (863)
Q Consensus 352 ~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~ 431 (863)
++.+++.+++|+|++... + ..|+++++ |+|+|+||.||| +|||+.+|+|++++|| +||+|++|+++|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~--~-~~p~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~ 78 (451)
T PRK07678 9 ELLAKDEQYVWHGMKPYN--P-NATMVVAK--AEGAWVTDIQGN----RYLDGMSGLWCVNVGY-GRKELAEAAYEQLKT 78 (451)
T ss_pred HHHHHhhcccCCCccccc--c-CCCeeEEe--eeeeEEEeCCCC----EEEEccccHHhhcCCC-CCHHHHHHHHHHHHh
Confidence 344556677888875321 1 23667776 888999999999 9999999999999999 899999999999999
Q ss_pred cccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEE
Q 002941 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (863)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~ 511 (863)
+.+... .+.+++..+|+|+|++++|. .++|+|+||||||||+|||+| |.|++.+|+ +|| ++||+
T Consensus 79 ~~~~~~-~~~~~~~~~lae~l~~~~~~--~~~v~f~~sGseA~e~AlklA-r~~t~~~g~-~~r-----------~~ii~ 142 (451)
T PRK07678 79 LSYFPL-TQSHEPAIKLAEKLNEWLGG--EYVIFFSNSGSEANETAFKIA-RQYHAQKGE-PHR-----------YKFIS 142 (451)
T ss_pred cCcccc-ccCCHHHHHHHHHHHHhCCC--CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC-CCC-----------cEEEE
Confidence 877652 46789999999999999875 369999999999999999999 678766664 243 88999
Q ss_pred ecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhccc
Q 002941 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (863)
Q Consensus 512 ~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (863)
|+++|||+|.+++++++...++.. +.+. .+++.+++.|+.++. ++....
T Consensus 143 ~~~~yHG~t~~als~~~~~~~~~~--------~~~~--------~~~~~~~~~~~~~~~---------------~~~~~~ 191 (451)
T PRK07678 143 RYRAYHGNSMGALAATGQAQRKYK--------YEPL--------APGFLHVPPPDCYRM---------------PGIESE 191 (451)
T ss_pred ECCCcCCccHHHhhcCCCcccccc--------cCCC--------CCCCEEeCCCccccc---------------cccCCh
Confidence 999999999999999886554321 1111 134566777765421 111000
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC
Q 002941 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (863)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~ 671 (863)
+.....+.+.+++.|+. .++++|||||+||| ||.+|+++||++||++|+++|++||+|||+|||+|||||||+
T Consensus 192 --~~~~~~~~~~l~~~~~~----~~~~~iAAvi~EPi-qg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~ 264 (451)
T PRK07678 192 --DIYDLECVKEIDRVMTW----ELSETIAAVIMEPI-ITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGK 264 (451)
T ss_pred --HHHHHHHHHHHHHHHHh----cCCCceEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCch
Confidence 11223345567777752 34678999999998 999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHh
Q 002941 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN 751 (863)
Q Consensus 672 ~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~ 751 (863)
+|+++++|++|||+|+||+|||||+|+|++++++++++.+........+.|++||++||++|||++|+|++++++++.++
T Consensus 265 ~~~~~~~gv~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~ 344 (451)
T PRK07678 265 AFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIER 344 (451)
T ss_pred hHHHHhcCCCCCEEEeecccccCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999899999999999999986432223467999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCc-CCCCchHHHHHHHHHHHHCCcEEEec-------C
Q 002941 752 IIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC-NAGYGSLYAASLLKKLREDGVYMRPL-------G 823 (863)
Q Consensus 752 l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~-~~~~~~~~~~~l~~~l~e~GV~~~p~-------g 823 (863)
+.+.++++++.| .+.+++++.|.+|||.|+|+++++..+.. ..+.....+..++..|+++||++.+. +
T Consensus 345 ~~~~g~~l~~~l----~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~ 420 (451)
T PRK07678 345 SAQLGELLLEQL----KEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYN 420 (451)
T ss_pred HHHHHHHHHHHH----HHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeecCccccCCC
Confidence 888888887755 45567889999999999999999975431 12223345778999999999999764 2
Q ss_pred CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 824 NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 824 ~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+.+||+||+++|++|||+++++|+++++++
T Consensus 421 ~~lrl~Ppl~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 421 NVLTLSPPLVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred CEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999765
No 14
>PRK07036 hypothetical protein; Provisional
Probab=100.00 E-value=5.9e-74 Score=662.10 Aligned_cols=439 Identities=21% Similarity=0.249 Sum_probs=359.0
Q ss_pred ChhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHh
Q 002941 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (863)
Q Consensus 352 ~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~ 431 (863)
++.+.+++++|+||+++..+....|++|++ |+|+|+||.||| +|||+++|+|++++|| +||+|++|+++|+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~ 82 (466)
T PRK07036 10 ALAQADKRHLLHPWHDFSSLGKEGSLVIVE--AEGIYVTDADGR----RYLDGIGGMWCVNVGY-GREEMADAIADQARR 82 (466)
T ss_pred HHHHHhhcccccCccCccccccCCCceEEe--CceeEEEECCCC----EEEECcccHHhhcCCC-CCHHHHHHHHHHHHh
Confidence 344566778999998875444345678877 788999999999 9999999999999999 899999999999999
Q ss_pred cccccCCC-CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEE
Q 002941 432 FGHVMFPE-NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVL 510 (863)
Q Consensus 432 ~~~~~~~~-~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II 510 (863)
+.+.+... +.+++..+|||+|++.+|.+ +++|+|+||||||||+|||+| |.|+..+|. ++| ++||
T Consensus 83 ~~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~-t~r-----------~~Ii 148 (466)
T PRK07036 83 LPYYTPFGDMTNAPAAELAAKLAELAPGD-LNHVFLTTGGSTAVDSALRFV-HYYFNVRGR-PAK-----------KHII 148 (466)
T ss_pred CcccccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCchHHHHHHHHHH-HHHHHhcCC-CCc-----------cEEE
Confidence 87765433 68999999999999999865 689999999999999999999 678766664 343 8999
Q ss_pred EecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcc
Q 002941 511 ALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590 (863)
Q Consensus 511 ~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (863)
+|+++|||+|.+++++++.+.++..+ . +. .+++.+++.|++++. +.+.
T Consensus 149 ~~~~~YHG~t~~a~s~~~~~~~~~~~--------~----~~----~~~~~~~~~p~~~~~---------------~~~~- 196 (466)
T PRK07036 149 TRGDAYHGSTYLTASLTGKAADRTEF--------D----YA----SDLVHHLSSPNPYRR---------------PAGM- 196 (466)
T ss_pred EEcCccCCccHhhhcccCCCcccccc--------c----CC----CCCcEEecCCccccc---------------ccCC-
Confidence 99999999999999999866554211 1 11 023456666754421 0100
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC
Q 002941 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670 (863)
Q Consensus 591 ~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG 670 (863)
......+.+.+.+++.+. ..++++|||||+||| ||++|+++||++||++|+++|++||++||+|||+|||||||
T Consensus 197 -~~~~~~~~~~~~~~~~i~----~~~~~~iAavi~EPv-~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG 270 (466)
T PRK07036 197 -SEAAFCDFLVDEFEDKIL----SLGADNIAAFIAEPI-LGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLG 270 (466)
T ss_pred -ChHHHHHHHHHHHHHHHH----HcCCCceEEEEEeCC-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCc
Confidence 001223334455665554 245689999999998 99999999999999999999999999999999999999999
Q ss_pred Ccchhh-hcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcC-CccceeecccCCCccHHHHHHHHHHHHHhcChhh
Q 002941 671 VETTAD-LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQT 748 (863)
Q Consensus 671 ~~~a~e-~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~-~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l 748 (863)
++|+++ ++|+.|||+|+||+|+|||+|+|++++++++++.+... .....+.|++||++||++||+++++|++++++++
T Consensus 271 ~~~~~~~~~gv~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~l 350 (466)
T PRK07036 271 HFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGL 350 (466)
T ss_pred hhhhhhhhcCCCCCEEEEccccccCccccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCCH
Confidence 999998 79999999999999999988999999999999988642 1112357899999999999999999999988888
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcC-CCC--chHHHHHHHHHHHHCCcEEEecCCE
Q 002941 749 NHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN-AGY--GSLYAASLLKKLREDGVYMRPLGNV 825 (863)
Q Consensus 749 ~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~-~~~--~~~~~~~l~~~l~e~GV~~~p~g~~ 825 (863)
.+++.++++++++.|. + ++++|.|.+|||.|+|++++|.++... +.+ ....+..+...|+++||++.+.++.
T Consensus 351 ~~~~~~~g~~l~~~L~----~-l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~ 425 (466)
T PRK07036 351 CEHVREVGPYFEERLA----S-LRELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPLEHL 425 (466)
T ss_pred HHHHHHHHHHHHHHHH----H-hccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeecCCE
Confidence 9999988888887653 2 357899999999999999999765321 121 1235678899999999999998899
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 826 IYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 826 lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+++.||+++|++|||+++++|+++++++.
T Consensus 426 ~~l~Ppl~it~~~id~~~~~l~~al~~~~ 454 (466)
T PRK07036 426 CVLSPPLIITRAQIDEIVAILRAAIEETA 454 (466)
T ss_pred EEEeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998874
No 15
>PRK07480 putative aminotransferase; Validated
Probab=100.00 E-value=1e-73 Score=658.45 Aligned_cols=437 Identities=20% Similarity=0.269 Sum_probs=354.6
Q ss_pred hhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhc
Q 002941 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~ 432 (863)
+.+.+.+++|+|++++..+....+.++++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~ 82 (456)
T PRK07480 10 LQALDAAHHLHPFSDMKALNEKGSRVITR--AEGVYLWDSEGN----KILDGMAGLWCVNVGY-GRKELADAAARQMREL 82 (456)
T ss_pred HHhhhhcccccCcccccccccCCCceEEe--ceeeEEEeCCCC----EEEEccchHHHhcCCC-CCHHHHHHHHHHHHhc
Confidence 34445678899988764433234567776 888999999999 9999999999999999 8999999999999998
Q ss_pred ccccC-CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEE
Q 002941 433 GHVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (863)
Q Consensus 433 ~~~~~-~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~ 511 (863)
.+... ..+.+++..+|||+|++.+|.+ +++|+|++|||||||+|||+| |.|++.+|+ ++| ++||+
T Consensus 83 ~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AlklA-r~~~~~~g~-~~r-----------~~ii~ 148 (456)
T PRK07480 83 PYYNTFFKTTHPPAIELAAKLAEVAPPG-FNHVFFTNSGSEANDTVLRMV-RHYWALKGK-PQK-----------KVIIS 148 (456)
T ss_pred CCcccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC-CCC-----------cEEEE
Confidence 76542 2568999999999999999865 689999999999999999999 678766665 343 79999
Q ss_pred ecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhccc
Q 002941 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (863)
Q Consensus 512 ~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (863)
|+++|||+|++++++++...++.. +++. .+++.++++|++|+. .++ .
T Consensus 149 ~~~~yHG~tl~a~s~~g~~~~~~~--------~~~~--------~~~~~~~~~p~~~~~---------------~~~--~ 195 (456)
T PRK07480 149 RKNGYHGSTVAGASLGGMKYMHEQ--------GDLP--------IPGIVHIDQPYWFGE---------------GGD--M 195 (456)
T ss_pred ECCCcCCcchhhhhccCChhhhcc--------cCCC--------CCCCeecCCCccccc---------------ccC--C
Confidence 999999999999999875543321 1111 123455666655421 111 0
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC
Q 002941 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (863)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~ 671 (863)
+..++.+.+.+.+++.+.+ .+++++||||+||| ||++|+++||++||++|+++|++||++||+|||+|||||||+
T Consensus 196 ~~~~~~~~~~~~l~~~~~~----~~~~~vAAvi~EPi-qg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~ 270 (456)
T PRK07480 196 TPEEFGLAAARQLEAKILE----LGADNVAAFIGEPI-QGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGE 270 (456)
T ss_pred ChHHHHHHHHHHHHHHHHh----cCCCcEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcc
Confidence 1123334445666655532 35678999999998 999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHh
Q 002941 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN 751 (863)
Q Consensus 672 ~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~ 751 (863)
+|+++++|++|||+||||+|+|||+|+|++++++++++.+.... ..+.|++||+|||++|||++|+|++++++++.++
T Consensus 271 ~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~--~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~ 348 (456)
T PRK07480 271 WFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEG--GEFNHGFTYSGHPVAAAVALANLRILRDEGIVER 348 (456)
T ss_pred hhhhhhcCCCCCeeeeehhhccCCccceEEEEcHHHHHHHhcCC--CCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999889999999999999884211 2356999999999999999999999998888888
Q ss_pred H-HHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCch--HHHHHHHHHHHHCCcEEEecCCEEE
Q 002941 752 I-IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYGS--LYAASLLKKLREDGVYMRPLGNVIY 827 (863)
Q Consensus 752 l-~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~~--~~~~~l~~~l~e~GV~~~p~g~~lr 827 (863)
+ .++++++++.|+ + +.++|.|.+|||.|+|++++|.++. .+.++.. .....+...|+++||++.+.++.++
T Consensus 349 ~~~~~g~~l~~~l~----~-l~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~l~ 423 (456)
T PRK07480 349 VRDDTGPYLQKRLR----E-LADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAVGDRMI 423 (456)
T ss_pred HHHHHHHHHHHHHH----H-hhcCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeecCCEEE
Confidence 8 588888887553 3 4568999999999999999997543 1122211 2345788899999999998889999
Q ss_pred EecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 828 LMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 828 ~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
|.||+++|++|||+++++|++++.++.+
T Consensus 424 ~~Ppl~it~~eid~~~~~l~~al~~~~~ 451 (456)
T PRK07480 424 ISPPLVITHAEIDELVEKARKALDATAA 451 (456)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988643
No 16
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=1.5e-73 Score=658.16 Aligned_cols=439 Identities=27% Similarity=0.428 Sum_probs=358.1
Q ss_pred hhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhc
Q 002941 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~ 432 (863)
+.+++.+++|+|++++.......|++|++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~l 88 (460)
T PRK06916 16 LSEKNKAYVWHPFTQMKDYLEEDPLIIER--GEGRKLYDVNGN----EYYDGVSSIWLNVHGH-QVPELDEAIREQLNKI 88 (460)
T ss_pred HHHHHhhccccccccccccccCCCeeEEe--ccccEEEeCCCC----EEEEcchhHHHhhcCC-CCHHHHHHHHHHHHhC
Confidence 34556677899988653221234677776 889999999999 9999999999999999 8999999999999998
Q ss_pred ccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEe
Q 002941 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (863)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~ 512 (863)
.+.....+.+++..+|||+|++++|.+ +++|+|+||||||||+|||+| |.|+..+|. +|| ++||+|
T Consensus 89 ~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseAve~AlklA-r~~~~~~g~-tgr-----------~~ii~~ 154 (460)
T PRK06916 89 AHSTLLGLANVPSILLAEKLIEVVPEG-LKKVFYSDSGATAVEIAIKMA-FQYWQNKGK-PKK-----------QRFVTL 154 (460)
T ss_pred CCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC-CCC-----------cEEEEE
Confidence 877655678999999999999999854 689999999999999999999 677766664 354 899999
Q ss_pred cCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccC
Q 002941 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (863)
Q Consensus 513 ~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d 592 (863)
+++|||+|.+++++++...++..+ .++. .++.++++|+.++. +++ .+
T Consensus 155 ~~~YHG~t~~als~s~~~~~~~~~--------~~~~--------~~~~~~p~p~~~~~---------------~~~--~~ 201 (460)
T PRK06916 155 KNAYHGDTIGAVSVGAIDLFHQVY--------SSLL--------FEAIKMPYPYTYRS---------------PYG--ND 201 (460)
T ss_pred CCcCCcccHHhHhccCCccccccc--------CCCC--------CCCEEeCCCccccc---------------ccC--CC
Confidence 999999999999999866554321 1111 23455666754421 010 01
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc
Q 002941 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (863)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~ 672 (863)
.+...+.+.+.+++.|++ ++++|||||+||++||.||+++||++||++|+++|++||++||+|||+|||||||++
T Consensus 202 ~~~~~~~~~~~l~~~l~~-----~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~ 276 (460)
T PRK06916 202 KAEIVKKHLEELEELLKE-----KHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKM 276 (460)
T ss_pred hHHHHHHHHHHHHHHHHh-----CCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchh
Confidence 112233445667777753 568999999999339999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCC-ccceeecccCCCccHHHHHHHHHHHHHhcChhhHHh
Q 002941 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN 751 (863)
Q Consensus 673 ~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~-~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~ 751 (863)
|+++++|+.|||+|+||+|+|||+|+|++++++++++.+.... ....+.|++||++||++||+++++|+++++++++++
T Consensus 277 ~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~ 356 (460)
T PRK06916 277 FACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTNLIEQ 356 (460)
T ss_pred hHHHhcCCCCCeeeeehhhhcCccccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999999889999999999999885321 112456899999999999999999999998888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCc--hHHHHHHHHHHHHCCcEEEecCCEEEE
Q 002941 752 IIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYG--SLYAASLLKKLREDGVYMRPLGNVIYL 828 (863)
Q Consensus 752 l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~--~~~~~~l~~~l~e~GV~~~p~g~~lr~ 828 (863)
+.++++++++.| .++ .+++.|++|||.|+|+++++.++. .++++. ...+..+...|+++||++.+.|+.++|
T Consensus 357 ~~~~g~~l~~~l----~~l-~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~l~~ 431 (460)
T PRK06916 357 VARKTEYVATQL----EDL-FALKHVGDIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPLGNTIVF 431 (460)
T ss_pred HHHHHHHHHHHH----HHh-hcCCCeEEeecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEecCCEEEE
Confidence 988888888755 344 358899999999999999998643 122221 123567899999999999999999999
Q ss_pred ecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 829 MCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 829 ~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
.||+++|++|||+++++|+++|+++.+
T Consensus 432 ~Ppl~it~~~id~~~~~l~~~l~~~~~ 458 (460)
T PRK06916 432 MPPLASTIDELDEMLRILYKAISDVTE 458 (460)
T ss_pred eCCcccCHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999987653
No 17
>PRK06105 aminotransferase; Provisional
Probab=100.00 E-value=2.8e-73 Score=655.89 Aligned_cols=440 Identities=20% Similarity=0.274 Sum_probs=358.6
Q ss_pred hhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhc
Q 002941 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~ 432 (863)
+.+++.++.|+|+..........|.++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~i~~Ai~~q~~~~ 80 (460)
T PRK06105 8 LEARDIAYHLHPYTNARRHEEEGPLVIER--GEGIYVYDDAGK----RYIEGMAGLWSVALGF-SEQRLVEAAARQMKKL 80 (460)
T ss_pred HHHhhhhhcccCCcccccccccCCceEEe--eeEEEEEECCCC----EEEEcchhHHhccCCC-CCHHHHHHHHHHHHhC
Confidence 45566788999988654332234667776 789999999999 9999999999999999 8999999999999998
Q ss_pred cccc-CCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEE
Q 002941 433 GHVM-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (863)
Q Consensus 433 ~~~~-~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~ 511 (863)
.+.. +..+.++++.+|+|+|++.+|.+ +++|+|+||||||||+|||+| |+|++.+|. ++| ++||+
T Consensus 81 ~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseAve~AlKla-r~~~~~~g~-t~r-----------~~il~ 146 (460)
T PRK06105 81 PFYHTFSHKSHGPVIDLAEKLVAMAPVP-MSKVFFTNSGSEANDTVVKLV-WYYNNALGR-PEK-----------KKIIS 146 (460)
T ss_pred CCeecccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC-CCC-----------cEEEE
Confidence 7653 23467999999999999999865 689999999999999999999 567665554 343 89999
Q ss_pred ecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhccc
Q 002941 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (863)
Q Consensus 512 ~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (863)
++++|||+|.+++++++.+.++.. +++. . +++.++++|++++.. +. ..
T Consensus 147 ~~~~yHG~t~~a~s~t~~~~~~~~--------~~~~----~----~~~~~~~~p~~~~~~----------~~------~~ 194 (460)
T PRK06105 147 RQRGYHGVTIASASLTGLPNNHRS--------FDLP----L----DRILHTGCPHYYRFG----------LP------GE 194 (460)
T ss_pred ecCccCCcchhheeccCCcccccc--------cCCC----C----CCCEEcCCCcccccc----------cC------CC
Confidence 999999999999999875544321 1111 1 245667777654210 00 00
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC
Q 002941 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (863)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~ 671 (863)
..+...+.+.+++|+.++. .+++++||||+||| ||++|++++|++||++|+++|++||++||+|||||||||||+
T Consensus 195 ~~~~~~~~~~~~le~~~~~----~~~~~iAavIvEPi-qg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~ 269 (460)
T PRK06105 195 SEEAFATRLANELEALILA----EGPDTIAAFIGEPV-MGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGN 269 (460)
T ss_pred ChHHHHHHHHHHHHHHHHH----cCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCch
Confidence 0112333455667776642 34578999999998 999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCc-cceeecccCCCccHHHHHHHHHHHHHhcChhhHH
Q 002941 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNH 750 (863)
Q Consensus 672 ~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~-~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~ 750 (863)
+|+++++|++|||+|+||+||||++|+|++++++++++.+..... ...+.|++||++||++||+++++|++++++++.+
T Consensus 270 ~f~~~~~~v~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~ 349 (460)
T PRK06105 270 MFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVG 349 (460)
T ss_pred hhhHHhcCCCCCeeeeecccccCcccceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999999998899999999999998864321 1235689999999999999999999999888889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCc--hHHHHHHHHHHHHCCcEEEecCCEEE
Q 002941 751 NIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYG--SLYAASLLKKLREDGVYMRPLGNVIY 827 (863)
Q Consensus 751 ~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~--~~~~~~l~~~l~e~GV~~~p~g~~lr 827 (863)
+++++++++++.| .++ +++|.|.+|||.|+|++|++..+. .+.++. ...+..+...|+++||++.+.+++++
T Consensus 350 ~v~~~g~~l~~~L----~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~g~~i~ 424 (460)
T PRK06105 350 NAAERGARLQARL----RAL-ADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRAMGDTLA 424 (460)
T ss_pred HHHHHHHHHHHHH----HHh-hcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEEecCCEEE
Confidence 9998888888755 455 678999999999999999997543 122221 23456788999999999999889999
Q ss_pred EecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 828 LMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 828 ~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
+.||+++|++|||+++++|+++++++.+
T Consensus 425 l~Ppl~it~~eid~~~~~l~~~l~~~~~ 452 (460)
T PRK06105 425 FCPPLIITAAQVDEMVDRFGRALDDVAA 452 (460)
T ss_pred EECCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988654
No 18
>PRK12403 putative aminotransferase; Provisional
Probab=100.00 E-value=1.7e-72 Score=649.44 Aligned_cols=435 Identities=17% Similarity=0.234 Sum_probs=353.2
Q ss_pred hhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcc
Q 002941 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (863)
Q Consensus 354 ~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~ 433 (863)
.+.+..+.|+|++++.......|.+|++ |+|+|+||.||| +|||+.+|+|++++|| +||+|++|+++|++++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~p~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~hp~v~~A~~~q~~~~~ 87 (460)
T PRK12403 15 QAADAAHHIHAFLDQKALNAEGPRVMVR--GEGLHLWDNDGK----RYLDGMSGLWCTNLGY-GRKDLAAAAARQMEQLP 87 (460)
T ss_pred HHhhhcccccccccccccccCCCceEEe--ceeeEEEeCCCC----EEEECchhHHhhcCCC-CCHHHHHHHHHHHHhCC
Confidence 3445677899998764322234677776 889999999999 9999999999999999 89999999999999988
Q ss_pred cccCC-CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEe
Q 002941 434 HVMFP-ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (863)
Q Consensus 434 ~~~~~-~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~ 512 (863)
+.+.. .+.++++.+|+|+|++++|.+ +++|+|+||||||||+|||+| |.|+..+|++ + |.+||.+
T Consensus 88 ~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AiklA-r~~~~~~g~~-~-----------r~~ii~~ 153 (460)
T PRK12403 88 YYNMFFHTTHPAVIELSELLFSLLPGH-YSHAIYTNSGSEANEVLIRTV-RRYWQVLGKP-Q-----------KKIMIGR 153 (460)
T ss_pred CeecccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhhCCC-C-----------CcEEEEE
Confidence 76432 457899999999999999854 689999999999999999999 6776555431 2 3789999
Q ss_pred cCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccC
Q 002941 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (863)
Q Consensus 513 ~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d 592 (863)
.++|||+|++++++++...++. .++. .+++.++++|++|++. ++. .
T Consensus 154 ~~~yHG~t~~~~s~s~~~~~~~---------~~~~--------~~~~~~~~~p~~~~~~---------------~~~--~ 199 (460)
T PRK12403 154 WNGYHGSTLAATALGGMKFMHE---------MGGL--------IPDVAHIDEPYWYANG---------------GEL--T 199 (460)
T ss_pred CCCcCcccHhhhhcCCCccccc---------cCCC--------CCCCEEeCCCcccccc---------------cCC--C
Confidence 9999999999999988554431 0111 1245567777655321 000 0
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc
Q 002941 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (863)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~ 672 (863)
...+.+.+.+.+++.+.+ .+++++||||+||| ||++|+++||++||++|+++|++||++||+|||||||||||++
T Consensus 200 ~~~~~~~~~~~le~~~~~----~~~~~iaavI~Epv-~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~ 274 (460)
T PRK12403 200 PAEFGRRAALQLEEKILE----LGAENVAGFVAEPF-QGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEW 274 (460)
T ss_pred hHHHHHHHHHHHHHHHHH----hCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchh
Confidence 012333444556655542 34578999999998 9999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhH
Q 002941 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (863)
Q Consensus 673 ~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l 752 (863)
|+++++|++|||+|+||+|||||+|+|++++++++++.+.... ..+.|++||++||++|||++|+|++++++++.+++
T Consensus 275 ~a~e~~gv~PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~~~--~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~ 352 (460)
T PRK12403 275 FAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQG--GVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRV 352 (460)
T ss_pred hhhhhcCCCCCeEEEcccccccccceEEEEECHHHHHHHhcCC--CccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999999999999889999999999999986422 23568999999999999999999999988888888
Q ss_pred H-HHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCc--hHHHHHHHHHHHHCCcEEEecCCEEEE
Q 002941 753 I-PERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYG--SLYAASLLKKLREDGVYMRPLGNVIYL 828 (863)
Q Consensus 753 ~-~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~--~~~~~~l~~~l~e~GV~~~p~g~~lr~ 828 (863)
+ ++++++++.| .++.+++|.|++|||.|+|++++|..+. ++.++. ......+...|+++||++.+.++.+++
T Consensus 353 ~~~~g~~l~~~L----~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~l 428 (460)
T PRK12403 353 KDDTGPYLQRCL----REVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRSTLGRMIM 428 (460)
T ss_pred HHHHHHHHHHHH----HHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEEEEecCCEEEE
Confidence 6 7888887744 4567789999999999999999997543 112211 123455778889999999988888999
Q ss_pred ecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 829 MCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 829 ~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+||+++|++|||+++++|+++++++.
T Consensus 429 ~Ppl~it~~eid~~~~~l~~al~~~~ 454 (460)
T PRK12403 429 APALVAGRAEIDELVDKTRIAVDRTA 454 (460)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998874
No 19
>PRK06062 hypothetical protein; Provisional
Probab=100.00 E-value=1e-72 Score=649.70 Aligned_cols=424 Identities=21% Similarity=0.240 Sum_probs=348.0
Q ss_pred hhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccc
Q 002941 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (863)
Q Consensus 355 ~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~ 434 (863)
+.+..++|++|+... ...|++|++ |+|+|+||.||| +|||+.+|+|++++|| +||+|++|+++|++++.+
T Consensus 18 ~~~~~~~~~~~~~~~---~~~p~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~~~ 87 (451)
T PRK06062 18 ALDRAHVFHSWSAQG---KINPMVIAG--AEGSYVWDYEGR----RYLDFSSQLVNTNIGH-QHPKVVAAIQEQAARLCT 87 (451)
T ss_pred Hhhhhhccccccccc---cCCCceEEe--ceeeEEEECCCC----EEEEcccCHHhhcCCC-CCHHHHHHHHHHHHhcCC
Confidence 345567888887642 123567776 899999999999 9999999999999999 899999999999999887
Q ss_pred ccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecC
Q 002941 435 VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514 (863)
Q Consensus 435 ~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~ 514 (863)
+.. .+.+++..+|||+|++++|.+ +++|+|+||||||||+|||+| |.| ||| ++||+|++
T Consensus 88 ~~~-~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGsEAve~AlklA-r~~-------tgr-----------~~ii~~~~ 146 (451)
T PRK06062 88 VAP-AHANDARSEAARLIAERAPGD-LSKVFFTNGGADANEHAVRMA-RLH-------TGR-----------PKVLSAYR 146 (451)
T ss_pred cCC-ccCCHHHHHHHHHHHHhCCCC-CCEEEEcCChHHHHHHHHHHH-HHh-------hCC-----------ceEEEEeC
Confidence 654 578999999999999999865 689999999999999999999 666 454 78999999
Q ss_pred CCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCch
Q 002941 515 SYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (863)
Q Consensus 515 sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 594 (863)
+|||+|.+++++++.+.++.. . |. .+++.+++.|+.++ ++|...+| .
T Consensus 147 ~yHG~t~~als~~~~~~~~~~---------~-----~~---~~~~~~~~~p~~~~---------------~~~~~~~~-~ 193 (451)
T PRK06062 147 SYHGGTGSAINLTGDPRRWPN---------D-----TG---RAGVVHFFGPFLYR---------------SEFHATTE-E 193 (451)
T ss_pred CCCCCCHHHHhhcCCcccccC---------C-----CC---CCCCEEeCCCCccc---------------cccCCCCh-H
Confidence 999999999999875533210 0 11 12445556665442 11211112 1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch
Q 002941 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (863)
Q Consensus 595 ~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a 674 (863)
+....+.+.+++.|+. .+++++||||+||| ||++|+++||++||++|+++|++||++||+|||+|||||+|++|+
T Consensus 194 ~~~~~~~~~le~~l~~----~~~~~iAaviiEPv-~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a 268 (451)
T PRK06062 194 EECERALAHLERVIEL----EGPSTIAAILLESV-PGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFA 268 (451)
T ss_pred HHHHHHHHHHHHHHHh----cCCCceEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHH
Confidence 2223345667777752 34578999999998 999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 675 ~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
++++|+.|||+||||+|||||+|+|++++++++++.+... .+.|++||++||++||+++|+|++++++++.+++.+
T Consensus 269 ~~~~gv~PDi~t~gK~lggG~~Pigav~~~~~i~~~~~~~----~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~ 344 (451)
T PRK06062 269 IEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFADR----PYPGGLTYSGHPLACAAAVATINAMEEEGIVENAAR 344 (451)
T ss_pred HHhcCCCCCeeeechhhhcCCcCcEEEEEcHHHHHHhccC----CCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999999999999988999999999999998632 356889999999999999999999988888888888
Q ss_pred HH-HHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCc-CCCCc-----hHHHHHHHHHHHHCCcEEEecCCEEE
Q 002941 755 ER-RILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC-NAGYG-----SLYAASLLKKLREDGVYMRPLGNVIY 827 (863)
Q Consensus 755 ~~-~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~-~~~~~-----~~~~~~l~~~l~e~GV~~~p~g~~lr 827 (863)
.+ +++++. |.++.+++|.|.+|||.|+|++|++..+.. +.+.. ...+..+.+.|+++||++.+.++++|
T Consensus 345 ~G~~~l~~~----L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~~~~lr 420 (451)
T PRK06062 345 IGAEVLGPG----LRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVNGNRIH 420 (451)
T ss_pred HHHHHHHHH----HHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEeecCCEEE
Confidence 77 466664 455667789999999999999999975431 11111 12467889999999999988889999
Q ss_pred EecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 828 LMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 828 ~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
|.||+++|++|||+++++|+++++++++
T Consensus 421 l~ppl~~t~~eid~~~~~l~~~l~~~~~ 448 (451)
T PRK06062 421 VVPPCTVTEDEVREGLAILDAALAVADA 448 (451)
T ss_pred EECCccCCHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999988765
No 20
>PRK07483 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-72 Score=646.13 Aligned_cols=416 Identities=21% Similarity=0.256 Sum_probs=340.1
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++.+.....+.+++..+|+++|+++
T Consensus 13 p~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~~ 85 (443)
T PRK07483 13 LPVAVA--GEGIYLIDATGK----RYLDASGGAAVSCLGH-SHPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVAA 85 (443)
T ss_pred CceEEe--ceEEEEEeCCCC----EEEEcCccHhhhccCC-CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHh
Confidence 566766 899999999999 9999999999999999 899999999999999876543346799999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
+|.+ +++|+|+||||||||+|||+| |.|++.+|+ ++| ++||+|+++|||+|.+++++++...++..
T Consensus 86 ~p~~-~~~v~f~~sGsEAve~AlklA-r~~~~~~g~-~~r-----------~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~ 151 (443)
T PRK07483 86 APAG-LEHVYFVSGGSEAVEAALKLA-RQYFVEIGQ-PQR-----------RHFIARRQSYHGNTLGALAIGGNAWRREP 151 (443)
T ss_pred CCCC-CCEEEEcCCcHHHHHHHHHHH-HHHHHhcCC-CCC-----------cEEEEECCCcCCcCHHHhhhcCCcccccc
Confidence 8855 689999999999999999999 678766664 343 88999999999999999999886544321
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+++.. +++.+++.|+.|+. ... ......+...+.+.+++.+. ..
T Consensus 152 --------~~p~~--------~~~~~~~~~~~~~~---------------~~~-~~~~~~~~~~~~~~l~~~~~----~~ 195 (443)
T PRK07483 152 --------FAPLL--------IEAHHVSPCYAYRE---------------QRA-GESDEAYGQRLADELEAKIL----EL 195 (443)
T ss_pred --------cCCCC--------CCCEEeCCCccccc---------------ccc-CCCHHHHHHHHHHHHHHHHH----hc
Confidence 11111 12345555543310 000 00111223334566666554 23
Q ss_pred CCCcEEEEEEcccccc-CCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 616 VSGCIGALIIEPVVHA-AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg-~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
+++++||||+||| || .||+++||++||++|+++|+|||++||+|||+|||||||++|+++++|++|||+|+||+|+||
T Consensus 196 ~~~~iAAvivEPi-qg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~gG 274 (443)
T PRK07483 196 GPDTVAAFVAETV-VGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVTIAKGLGAG 274 (443)
T ss_pred CCCceEEEEEeCc-ccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeeeehhhhccC
Confidence 5678999999998 98 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
|+|+|++++++++++.+.... ..+.|++||+|||++||+++|+|++++++++.+++.++++++++.| .++++++
T Consensus 275 ~~Pi~av~~~~~i~~~~~~~~--~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L----~~l~~~~ 348 (443)
T PRK07483 275 YQPIGAVLASDRIYDAIADGS--GFFQHGHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLRARL----RERLGQH 348 (443)
T ss_pred ccccEEEEEcHHHHHHHhcCC--CccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHhcC
Confidence 889999999999999886421 2356999999999999999999999999888888888888887754 5566789
Q ss_pred CCeeEecccceEEEEEEccCC-cCCCCc--hHHHHHHHHHHHHCCcEEEec--------CCEEEEecCCCCcHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAG-CNAGYG--SLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~-~~~~~~--~~~~~~l~~~l~e~GV~~~p~--------g~~lr~~ppl~~t~eeid~~v 843 (863)
|.|.+|||.|+|+++++.++. +..++. ......+.+.|+++||++.+. ++.++|.||+++|++|||+++
T Consensus 349 ~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~ 428 (443)
T PRK07483 349 PHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIV 428 (443)
T ss_pred CCeeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccccCCCCCEEEEECCCCCCHHHHHHHH
Confidence 999999999999999997643 122221 234677899999999999865 479999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 002941 844 LKLYQRLEEFDK 855 (863)
Q Consensus 844 ~~L~~~l~~l~~ 855 (863)
++|+++|.++..
T Consensus 429 ~~l~~~l~~~~~ 440 (443)
T PRK07483 429 ERLGDAIDAALA 440 (443)
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 21
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=9e-72 Score=637.69 Aligned_cols=418 Identities=29% Similarity=0.458 Sum_probs=346.5
Q ss_pred hhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccc
Q 002941 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (863)
Q Consensus 355 ~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~ 434 (863)
+.+.+++|+||++... ..++.++++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++.+
T Consensus 8 ~~~~~~~~~~~~~~~~--~~~~~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~ 78 (429)
T PRK06173 8 ELDRQHIWHPYSSVTD--PIPVYPVER--ADGVMITLKDGR----RLIDGMSSWWAALHGY-NHPRLNAAATNQLAKMSH 78 (429)
T ss_pred hhhhcccccccccccc--cCCCceEEe--ceeeEEEcCCCC----EEEEccchHHhccCCC-CCHHHHHHHHHHHHhcCC
Confidence 3456688999876521 223345666 889999999999 9999999999999999 899999999999999987
Q ss_pred ccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecC
Q 002941 435 VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514 (863)
Q Consensus 435 ~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~ 514 (863)
..+..+.+++..+|+|+|++.+|.+ +++|+|+||||||||+|||+| |.|++.+|+ ++| ++||+|++
T Consensus 79 ~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~-~~r-----------~~ii~~~~ 144 (429)
T PRK06173 79 IMFGGFTHEPAVELAQKLLEILPPS-LNKIFFADSGSVAVEVAMKMA-LQYQQAKGE-VQR-----------TKFATIRS 144 (429)
T ss_pred ccccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCCchHHHHHHHHHH-HHHHHHhCC-CCC-----------cEEEEECC
Confidence 7655678999999999999999854 789999999999999999999 678766664 343 78999999
Q ss_pred CCccCccccceecCCC-CCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCc
Q 002941 515 SYHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (863)
Q Consensus 515 sYHG~t~gals~t~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 593 (863)
+|||+|.+++++++.. .+++. +++.. +.+.++++|+.+ + .
T Consensus 145 ~yHG~t~~a~s~~~~~~~~~~~--------~~~~~--------~~~~~~~~p~~~------------------~---~-- 185 (429)
T PRK06173 145 GYHGDTWHAMSVCDPVTGMHGL--------FNHSL--------PVQYFLPQPSIK------------------F---G-- 185 (429)
T ss_pred CcCCcchhhhccCCCchhhhhc--------ccccC--------CCCeEeCCCCcc------------------c---c--
Confidence 9999999999998742 23321 11111 123345555321 0 0
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc
Q 002941 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (863)
Q Consensus 594 ~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~ 673 (863)
..+.+.+.+.+++.++. +++++||||+||++||.||+++||++|+++|+++|++||++||+|||||||||+|++|
T Consensus 186 ~~~~~~~l~~l~~~i~~-----~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~ 260 (429)
T PRK06173 186 EEWNDEAIEPLQDLLEQ-----KGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLF 260 (429)
T ss_pred hhHHHHHHHHHHHHHHh-----CCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcch
Confidence 12233345667777753 4578999999995499999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHH
Q 002941 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (863)
Q Consensus 674 a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~ 753 (863)
+++++|+.|||+||||+|+|||+|+|++++++++++.+... ..+.+.|++||++||++||+++++|++++++++.++++
T Consensus 261 a~~~~gv~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~~-~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~ 339 (429)
T PRK06173 261 ALEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSG-EAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQ 339 (429)
T ss_pred HHHhcCCCCCEEEeehhhhCCccccceEEecHHHHHHHhcC-CCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999989999999999999998642 12346799999999999999999999998888899999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCC
Q 002941 754 PERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPC 833 (863)
Q Consensus 754 ~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~ 833 (863)
++++++++.|+ + +.+++.|.+|||.|+|++|++.++. .+..+.+.|+++||++.+.|++++|.||++
T Consensus 340 ~~g~~l~~~L~----~-~~~~~~v~~vRg~Gl~~~iel~~~~--------~~~~i~~~l~e~Gi~v~~~g~~l~~~Ppl~ 406 (429)
T PRK06173 340 RIEAQLKQELA----P-AAEFDSVAEVRVLGAIGVVEMKEPV--------NMATLQPRFVEHGIWVRPFGKLVYIMPPFI 406 (429)
T ss_pred HHHHHHHHHHH----H-hhcCCCeeeeeccceEEEEEeCCcc--------cHHHHHHHHHHCCeEEEecCCEEEEeCCcc
Confidence 99888887553 2 2467889999999999999997542 246788999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHH
Q 002941 834 SSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 834 ~t~eeid~~v~~L~~~l~~l 853 (863)
+|++|+|+++++|++++.++
T Consensus 407 it~~ei~~~~~~l~~~l~~~ 426 (429)
T PRK06173 407 ISPDELSQLTSGLLRVLKQE 426 (429)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999753
No 22
>PRK06541 hypothetical protein; Provisional
Probab=100.00 E-value=2.6e-71 Score=639.17 Aligned_cols=438 Identities=23% Similarity=0.308 Sum_probs=357.2
Q ss_pred ChhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHh
Q 002941 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (863)
Q Consensus 352 ~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~ 431 (863)
++.+.+++++||||++.......+|.+|++ |+|+|+||.||| +|||+++|+|++++|| +||+|++|+++|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Av~~q~~~ 83 (460)
T PRK06541 11 DLQALAKRHLWMHFTRHGAYIDAPVPVIVR--GEGCYIWDDRGK----RYLDGLAGLFVVQVGH-GRAELAEAAAKQAGT 83 (460)
T ss_pred HHHHHhhcccccCccCccccccCCCceEEe--CcccEEEeCCCC----EEEECCccHHhccCCC-CCHHHHHHHHHHHhh
Confidence 445667889999999975443334667776 889999999999 9999999999999999 899999999999999
Q ss_pred cccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEE
Q 002941 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (863)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~ 511 (863)
+.+.+...+.+++..+||++|++.+|.+ +++|+|+||||||||+|||+| |.|++.+|.+ + |.+||+
T Consensus 84 ~~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~~-~-----------r~~ii~ 149 (460)
T PRK06541 84 LAFFPLWSYAHPPAIELAERLAALAPGD-LNRVFFTTGGSEAVESAWKLA-KQYFKLTGKP-G-----------KHKVIS 149 (460)
T ss_pred CcCccccccCCHHHHHHHHHHHHhCCCC-cCEEEEcCCcHHHHHHHHHHH-HHHHHhcCCC-C-----------ccEEEE
Confidence 9877655678999999999999998865 689999999999999999999 6776555542 3 389999
Q ss_pred ecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhccc
Q 002941 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (863)
Q Consensus 512 ~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (863)
|+++|||+|.+++++++.+.++.. +.+. .+++.+++.|++++. + .+. +
T Consensus 150 ~~~~yHG~t~~a~s~~~~~~~~~~--------~~~~--------~~g~~~~~~~~~~~~--------~------~~~--~ 197 (460)
T PRK06541 150 RAIAYHGTTQGALAITGLPAFKAP--------FEPL--------VPGGFRVPNTNFYRA--------P------ELG--D 197 (460)
T ss_pred EcCcccCcchhhhcCcCChhhccc--------cCCC--------CCCcEEeCCCccccc--------c------ccC--C
Confidence 999999999999999886654421 1111 134566777754420 0 011 1
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC
Q 002941 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (863)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~ 671 (863)
+...+...+++.+++.++. .+++++||||+||| ||++|++++|++||++|+++|++||++||+|||||||||+|+
T Consensus 198 ~~~~~~~~~~~~l~~~l~~----~~~~~~Aavi~EPv-~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~ 272 (460)
T PRK06541 198 DPEAFGRWAADRIEEAIEF----EGPDTVAAVFLEPV-QNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGE 272 (460)
T ss_pred CHHHHHHHHHHHHHHHHHh----cCCCCEEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCch
Confidence 1122334456677777753 24678999999998 999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHh
Q 002941 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN 751 (863)
Q Consensus 672 ~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~ 751 (863)
+|+++++|++|||+||||+|+|||+|+|++++++++++.+.... ..+.|++||++||++||+++++|++++++++.++
T Consensus 273 ~~a~~~~gv~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~~~--~~~~~~~T~~gnp~~~aaala~l~~l~~~~~~~~ 350 (460)
T PRK06541 273 MFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGP--TMFLHGYTFGGHPVSAAVALANLDIFEREGLLDH 350 (460)
T ss_pred hhhhhhcCCCCCEEEecccccCCccceeEEEEcHHHHHHhhcCC--CccccCCCCCCCHHHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999999999889999999999999886432 3466889999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCch-----HHHHHHHHHHHHCCcEEEec--C
Q 002941 752 IIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYGS-----LYAASLLKKLREDGVYMRPL--G 823 (863)
Q Consensus 752 l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~~-----~~~~~l~~~l~e~GV~~~p~--g 823 (863)
+.++++++.+.| .++. ++|.|.++||.|+|++++|.++. ++.++.. .....+...|+++||++.+. |
T Consensus 351 ~~~~g~~l~~~L----~~l~-~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~g 425 (460)
T PRK06541 351 VRDNEPAFRATL----EKLL-DLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRADDRG 425 (460)
T ss_pred HHHHHHHHHHHH----HHhh-cCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEecCCC
Confidence 888888888755 3333 48889999999999999997643 1222211 12246788999999999873 4
Q ss_pred -CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 824 -NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 824 -~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+.+||.||+++|++|||+++++|++++.++.
T Consensus 426 ~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06541 426 DPVVQLAPPLISGQEEFDEIEQILRSVLTEAW 457 (460)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999997654
No 23
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=3.8e-71 Score=631.68 Aligned_cols=415 Identities=26% Similarity=0.400 Sum_probs=340.1
Q ss_pred hhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcc
Q 002941 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (863)
Q Consensus 354 ~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~ 433 (863)
.+.+.+++|+|+++.. ..|.+|++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++.
T Consensus 5 ~~~~~~~~~~~~~~~~----~~p~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~i~~ai~~q~~~~~ 73 (422)
T PRK05630 5 REFDHRHIWHPYAAPG----VRNRLVTS--TDGVFLTLEDGS----TVIDAMSSWWSAAHGH-GHPRLKAAAHKQIDTMS 73 (422)
T ss_pred hhccccccccCcccCC----CCCeeEEe--ceeeEEEECCCC----EEEEcchhHHHhcCCC-CCHHHHHHHHHHHHhCC
Confidence 3345667899886521 24567776 899999999999 9999999999999999 89999999999999988
Q ss_pred cccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEec
Q 002941 434 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (863)
Q Consensus 434 ~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~ 513 (863)
+..+..+++++..+|+++|++.+|.+ +++|+|++|||||||+|||+| |.|+..+|.+ + |++||+|+
T Consensus 74 ~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AlklA-r~~~~~~g~~-~-----------r~~ii~~~ 139 (422)
T PRK05630 74 HVMFGGLTHEPAIKLTRKLLNLTDNG-LDHVFYSDSGSVSVEVAIKMA-LQYSKGQGHP-E-----------RTRLLTWR 139 (422)
T ss_pred CcccCCcCCHHHHHHHHHHHhhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcCCC-C-----------CcEEEEEC
Confidence 77654578999999999999998765 689999999999999999999 6776555542 4 38899999
Q ss_pred CCCccCccccceecCCC-CCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccC
Q 002941 514 GSYHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (863)
Q Consensus 514 ~sYHG~t~gals~t~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d 592 (863)
++|||+|.+++++++.. .++.. | .+.. +++.+++.|... . .+
T Consensus 140 ~~yHG~t~~als~~~~~~~~~~~----~----~~~~--------~~~~~~p~~~~~---------------~------~~ 182 (422)
T PRK05630 140 SGYHGDTFAAMSVCDPEGGMHSL----W----KGTL--------PEQIFAPAPPVR---------------G------SS 182 (422)
T ss_pred CCcCCccHHHhccCCCccccccc----c----cccC--------CCCeEcCCCccc---------------C------CC
Confidence 99999999999998742 23211 1 1110 122334444211 0 00
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc
Q 002941 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (863)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~ 672 (863)
....+.+.+.+++.+. +++||||+||++||+||+++||++|+++|+++|++||++||+|||||||||||++
T Consensus 183 -~~~~~~~~~~~~~~~~--------~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~ 253 (422)
T PRK05630 183 -PQEISEYLRSLELLID--------ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGEL 253 (422)
T ss_pred -hHHHHHHHHHHHHHHh--------hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchh
Confidence 0112234455555552 4799999999549999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhH
Q 002941 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (863)
Q Consensus 673 ~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l 752 (863)
|+++++|+.|||+||||+|+|||+|+|++++++++++.+........+.|++||++||++||+++++|++++++++.+++
T Consensus 254 ~a~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~ 333 (422)
T PRK05630 254 FATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQV 333 (422)
T ss_pred hHHHhcCCCCCeeeeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHH
Confidence 99999999999999999999998899999999999999864211124679999999999999999999999888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCC
Q 002941 753 IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGP 832 (863)
Q Consensus 753 ~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl 832 (863)
+++++++++.+. . +.++|.|.+|||.|+|++|++.++. .+..+...|+++||++.+.|++++|.||+
T Consensus 334 ~~~g~~l~~~L~----~-l~~~~~v~~vRg~Gl~~~ie~~~~~--------~~~~~~~~~~~~Gl~~~~~g~~l~~~PpL 400 (422)
T PRK05630 334 KRIEAELIAGLS----P-LAHLPGVADVRVLGAIGVVEMEQPV--------DMEEATQAAVDHGVWLRPFGRLVYVMPPY 400 (422)
T ss_pred HHHHHHHHHHHH----H-hhcCCCeeeeeccccEEEEEECCcc--------cHHHHHHHHHHCCeEEEecCCEEEEECCc
Confidence 988888887553 2 3458899999999999999997542 14578889999999999989999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHH
Q 002941 833 CSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 833 ~~t~eeid~~v~~L~~~l~~ 852 (863)
++|++|||+++++|++++++
T Consensus 401 ~it~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 401 ITTSEQIAQICAALAAAVKA 420 (422)
T ss_pred cCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999864
No 24
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=100.00 E-value=4e-71 Score=631.74 Aligned_cols=415 Identities=27% Similarity=0.413 Sum_probs=343.2
Q ss_pred hhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccc
Q 002941 356 RAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV 435 (863)
Q Consensus 356 ~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~ 435 (863)
.+.+++|+|++++.. ..++.+|++ |+|+|+||.||| +|||+++|+|++++|| +||+|++|+++|++++.+.
T Consensus 8 ~~~~~~~~~~~~~~~--~~~~~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~i~~Ai~~q~~~~~~~ 78 (428)
T PRK07986 8 FDQRHIWHPYTSMTS--PLPVYPVVS--AEGCELILADGR----RLVDGMSSWWAAIHGY-NHPQLNAAMKSQIDAMSHV 78 (428)
T ss_pred ccccccccCCccccc--CCCCeeEEe--eeeeEEEeCCCC----EEEEcchhHHhhcCCC-CCHHHHHHHHHHHhhcCCc
Confidence 345678999987643 234467776 788999999999 9999999999999999 8999999999999998877
Q ss_pred cCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCC
Q 002941 436 MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS 515 (863)
Q Consensus 436 ~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~s 515 (863)
.+..+.+++..+|+++|++++|.+ +++|+|+||||||||+|||+| |.|++.+| +|| ++||+|+++
T Consensus 79 ~~~~~~~~~~~~la~~L~~~~p~~-~~~v~f~~SGsEAve~AlklA-r~~~~~~g--~~r-----------~kii~~~~~ 143 (428)
T PRK07986 79 MFGGITHPPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMKMA-LQYWQAKG--EPR-----------QRFLTLRHG 143 (428)
T ss_pred cccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcC--CCC-----------cEEEEECCC
Confidence 644568999999999999999864 689999999999999999999 66765554 343 789999999
Q ss_pred CccCccccceecCCC-CCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCch
Q 002941 516 YHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (863)
Q Consensus 516 YHG~t~gals~t~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 594 (863)
|||+|.+++++++.. .++.. +.++. +++.+++.|.+++ . .
T Consensus 144 yHG~t~~a~s~~~~~~~~~~~--------~~~~~--------~~~~~~~~p~~~~------------------~-----~ 184 (428)
T PRK07986 144 YHGDTFGAMSVCDPDNSMHSL--------YKGYL--------PENLFAPAPQSRF------------------D-----G 184 (428)
T ss_pred cCCCcHhhhcccCCchhhhhc--------cCCCC--------CCCEEECCCCccc------------------c-----h
Confidence 999999999998642 23211 11111 2334455553220 0 0
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch
Q 002941 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (863)
Q Consensus 595 ~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a 674 (863)
++.....+.+++.++. .++++||||+||++||.||+++++++||++|+++|++||++||+|||||||||+|++|+
T Consensus 185 ~~~~~d~~~l~~~l~~-----~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa 259 (428)
T PRK07986 185 EWDERDIAPFARLMAA-----HRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFA 259 (428)
T ss_pred hhHHHHHHHHHHHHHh-----CCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeee
Confidence 1111123556666642 35789999999955999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 675 ~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
++++|+.|||+|+||+|+|||+|+|++++++++++.+.... ...+.|++||++||++||+++++|++++++++.+++++
T Consensus 260 ~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~-~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~ 338 (428)
T PRK07986 260 CEHAGIAPDILCLGKALTGGTMTLSATLTTREVAETISNGE-AGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAA 338 (428)
T ss_pred ecccCCCCCEEEechhhhCCcccCcchhchHHHHHHhhcCC-CCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999987521 12356899999999999999999999998888899999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCC
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCS 834 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~ 834 (863)
+++++++.+ .++ .+++.|++|||.|+|+++++.++. .+..+.+.|+++||++++.|+.++|.||+++
T Consensus 339 ~g~~l~~~l----~~l-~~~~~i~~vRg~Gl~~~ve~~~~~--------~~~~~~~~l~~~Gl~~~~~g~~i~~~Ppl~i 405 (428)
T PRK07986 339 IEAQLREEL----APL-RDAPMVADVRVLGAIGVVETTRPV--------NMAALQRFFVEQGVWIRPFGKLIYLMPPYII 405 (428)
T ss_pred HHHHHHHHH----HHH-hcCCCEEeEeccceEEEEEeCCcc--------cHHHHHHHHHHCCcEEEecCCEEEEeCCCCC
Confidence 888888755 333 358899999999999999997542 2457889999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~~ 852 (863)
|++||++++++|++++++
T Consensus 406 t~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 406 LPEQLQRLTAAVNRAVQD 423 (428)
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 999999999999999854
No 25
>PRK06917 hypothetical protein; Provisional
Probab=100.00 E-value=2e-70 Score=630.01 Aligned_cols=412 Identities=22% Similarity=0.268 Sum_probs=337.2
Q ss_pred EEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcC
Q 002941 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG 457 (863)
Q Consensus 378 ~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p 457 (863)
+|++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++.+.....+.+++..+|||+|++.+|
T Consensus 16 ~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p 88 (447)
T PRK06917 16 VISH--GKGVYLYDQNGN----KYFDGSSGAVTAGIGH-GVKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSP 88 (447)
T ss_pred eEEe--eeeeEEEeCCCC----EEEECchhHHhccCCC-CCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCC
Confidence 4665 899999999999 9999999999999999 89999999999999987664445679999999999999998
Q ss_pred CCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCc
Q 002941 458 KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537 (863)
Q Consensus 458 ~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~ 537 (863)
.. +++++|+||||||||+|||+| |+|++.+|. +|| ++||+|+++|||+|.+++++++...++..
T Consensus 89 ~~-~~~v~f~~sGsEAve~AlklA-r~~~~~rg~-t~r-----------~~ii~~~~~yHG~t~~als~~~~~~~~~~-- 152 (447)
T PRK06917 89 GD-LNWSFFVNSGSEANETAMKIA-IQHFQERGI-QGK-----------HKILSRWMSYHGITMGALSMSGHPLRRQR-- 152 (447)
T ss_pred CC-CCEEEEeCChHHHHHHHHHHH-HHHHHhcCC-CCC-----------CEEEEECCCcCCccHHHHHhcCCcccccc--
Confidence 64 579999999999999999999 567766665 354 89999999999999999999875544321
Q ss_pred CCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 002941 538 QPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (863)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~ 617 (863)
+.++. .++.+++.|.+++ ++++ .+...+...+.+.+++.++. .++
T Consensus 153 ------~~~~~--------~~~~~~~~p~~~~---------------~~~~--~~~~~~~~~~~~~le~~i~~----~~~ 197 (447)
T PRK06917 153 ------FVSLL--------EDYPTISAPYCYR---------------CPVQ--KVYPTCQLACATELETAIER----IGA 197 (447)
T ss_pred ------CCCCC--------CCCeEeCCCcccc---------------cccC--CChHHHHHHHHHHHHHHHHh----cCC
Confidence 11111 1223344554331 0111 01112223345566666653 334
Q ss_pred CcEEEEEEcccccc-CCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCC
Q 002941 618 GCIGALIIEPVVHA-AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVI 696 (863)
Q Consensus 618 ~~iAAvIvEPViqg-~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~ 696 (863)
++|||||+||+ || .||+++||++||++|+++|++||++||+|||+|||||||++|+++++|+.|||+||||+|+|||+
T Consensus 198 ~~iAAvi~EPi-~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~~gK~l~~G~~ 276 (447)
T PRK06917 198 EHIAAFIAEPI-IGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMTLGKGLGAGYT 276 (447)
T ss_pred CceEEEEEecc-ccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCEEEeeehhccCCc
Confidence 68999999998 88 57899999999999999999999999999999999999999999999999999999999999988
Q ss_pred CceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002941 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~ 776 (863)
|+|++++++++++.+.... ..+.|++||++||++|||++|+|++++++++.+++.++++++++.| .++.+++|.
T Consensus 277 Pi~a~~~~~~i~~~~~~~~--~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L----~~l~~~~~~ 350 (447)
T PRK06917 277 PIAATVVSDRVMEPILRGS--RSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGL----QKVQQQSTI 350 (447)
T ss_pred ceEEEEEcHHHHHHHhccC--cccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----HHHHhcCCC
Confidence 9999999999999886432 2456889999999999999999999988888888888888887754 556678899
Q ss_pred eeEecccceEEEEEEccCCc-CCCCc--hHHHHHHHHHHHHCCcEEEec--------CCEEEEecCCCCcHHHHHHHHHH
Q 002941 777 VQRVVALGTLCAIELQAAGC-NAGYG--SLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 777 v~~vrg~Gl~~~iel~~~~~-~~~~~--~~~~~~l~~~l~e~GV~~~p~--------g~~lr~~ppl~~t~eeid~~v~~ 845 (863)
|.+|||.|+|++++|.++.. ++++. ......+.+.|+++||++.+. ++.+++.||+++|++|||+++++
T Consensus 351 i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~ 430 (447)
T PRK06917 351 IGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSI 430 (447)
T ss_pred EEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHH
Confidence 99999999999999975431 12221 245778899999999999875 57999999999999999999999
Q ss_pred HHHHHHHHH
Q 002941 846 LYQRLEEFD 854 (863)
Q Consensus 846 L~~~l~~l~ 854 (863)
|+++++++.
T Consensus 431 l~~~l~~~~ 439 (447)
T PRK06917 431 FAKSVEEMM 439 (447)
T ss_pred HHHHHHHHH
Confidence 999998863
No 26
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=100.00 E-value=2.6e-70 Score=628.85 Aligned_cols=428 Identities=22% Similarity=0.316 Sum_probs=347.3
Q ss_pred cccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccC
Q 002941 358 GELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF 437 (863)
Q Consensus 358 ~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~ 437 (863)
.+++|+||+++..+.. .|.++++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++.+.+.
T Consensus 15 ~~~~~~~~~~~~~~~~-~p~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~l~~~~~ 86 (445)
T PRK09221 15 LDAHWMPFTANRQFKA-APRLLVS--AEGMYYTDADGR----KILDGTAGLWCCNAGH-GRPEIVEAVARQAATLDYAPA 86 (445)
T ss_pred hhhcccCcccccccCC-CCceEEe--ccccEEEeCCCC----EEEEccccHhhccCCC-CCHHHHHHHHHHHHhccCccc
Confidence 4568999887644322 4567776 889999999999 9999999999999999 899999999999999887765
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCc
Q 002941 438 PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYH 517 (863)
Q Consensus 438 ~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYH 517 (863)
..+.+++..+|+++|++++|.+ +++|+|+||||||||+|||+| |.|++.+|++ + |.+||+|+++||
T Consensus 87 ~~~~~~~~~~la~~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~~-~-----------r~~ii~~~~~yH 152 (445)
T PRK09221 87 FQMGHPLAFELAERLAELAPGG-LDHVFFTNSGSESVDTALKIA-LAYHRARGQG-T-----------RTRLIGRERGYH 152 (445)
T ss_pred cccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCCC-C-----------CcEEEEECCCcC
Confidence 5578999999999999999865 689999999999999999999 6776655531 3 378999999999
Q ss_pred cCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcc-hhhhhhccccccccccccchhhcccCchhH
Q 002941 518 GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDL 596 (863)
Q Consensus 518 G~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 596 (863)
|+|.+++++++.+.++..+ ++.. +++.++++|+ .++ +.+.... ...
T Consensus 153 G~t~gals~~~~~~~~~~~--------~~~~--------~~~~~~~~~~~~~~---------------~~~~~~~--~~~ 199 (445)
T PRK09221 153 GVGFGGISVGGIVNNRKMF--------GGLL--------PGVDHLPHTLDLPE---------------NAFSKGQ--PEH 199 (445)
T ss_pred ccchhhhccCCChhhhhcc--------CCCC--------CCCeEeCCCccccc---------------cccCCCh--HHH
Confidence 9999999999866544211 1111 1234455553 211 0111100 122
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhh
Q 002941 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (863)
Q Consensus 597 ~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e 676 (863)
...+.+.+++.++. .+++++||||+||| ||++|+++||++||++|+++|++||++||+|||||||||||++|+++
T Consensus 200 ~~~~~~~l~~~i~~----~~~~~iAavi~Epv-~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~ 274 (445)
T PRK09221 200 GAELADDLERLVAL----HDASTIAAVIVEPM-AGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAE 274 (445)
T ss_pred HHHHHHHHHHHHHh----cCCCcEEEEEEecc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHH
Confidence 23345566666653 33578999999998 99999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCC-ccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHH
Q 002941 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (863)
Q Consensus 677 ~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~-~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~ 755 (863)
++|+.|||+|+||+|+|||+|+|++++++++++.+.... ....+.|++||++||++||+++++|++++++++.++++++
T Consensus 275 ~~gv~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~~~~~~~ 354 (445)
T PRK09221 275 RFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDLFERAAEL 354 (445)
T ss_pred hcCCCCCEEEeccccccCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999999999999999999999999886421 1123568999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCc
Q 002941 756 RRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSS 835 (863)
Q Consensus 756 ~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t 835 (863)
++++++.|+ + +.++|.|.+|||.|+|+++++...... ....+..+.+.|+++||++++.++.+||+||+++|
T Consensus 355 g~~l~~~l~----~-l~~~~~v~~vrg~Gl~~~v~~~~~~~~---~~~~~~~~~~~~~~~Gv~~~~~~~~lr~~Ppl~~t 426 (445)
T PRK09221 355 APYFEDAVH----S-LKGLPHVIDIRNIGLVAGIELAPRPGA---PGARGYEAFMKCFEKGLLVRYTGDTIALSPPLIIE 426 (445)
T ss_pred HHHHHHHHH----h-hccCCCEEEEecCceEEEEEEeccccc---ccchHHHHHHHHHHCCeEEeecCCEEEEECCccCC
Confidence 888877553 3 346888999999999999999753211 11235678899999999999988999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002941 836 PEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 836 ~eeid~~v~~L~~~l~~l 853 (863)
++|||+++++|+++++++
T Consensus 427 ~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 427 KAQIDELVDALGDALRAV 444 (445)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999999764
No 27
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=100.00 E-value=4.8e-70 Score=626.13 Aligned_cols=429 Identities=22% Similarity=0.315 Sum_probs=345.8
Q ss_pred cccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccC
Q 002941 358 GELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF 437 (863)
Q Consensus 358 ~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~ 437 (863)
.++.|+|+++..... ..|.++++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++.+...
T Consensus 12 ~~~~~~~~~~~~~~~-~~p~~~~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~l~~~~~ 83 (442)
T PRK13360 12 LSAFWMPFTANRQFK-KAPRLLVA--AKGMYYTTHDGR----RVLDGTAGLWCVNAGH-GRPEIVEAVRAQAGELDYAPA 83 (442)
T ss_pred ccccccCcccccccc-CCCceEEe--eeeeEEEeCCCC----EEEECchhHHHhccCC-CCHHHHHHHHHHHHhCCCccc
Confidence 345788887654332 24567776 889999999999 9999999999999999 899999999999999887765
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCc
Q 002941 438 PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYH 517 (863)
Q Consensus 438 ~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYH 517 (863)
..+.+++..+||++|++++|.+ +++|+|+||||||||+|||+| |.|++.+|. ++ |.+||+|.++||
T Consensus 84 ~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~AlklA-r~~~~~~g~-~~-----------r~~ii~~~~~yH 149 (442)
T PRK13360 84 FQMGHPKAFELANRIAEIAPGG-LNHVFFTNSGSESVDTALKIA-LAYHRARGE-GS-----------RTRLIGRERGYH 149 (442)
T ss_pred CCcCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC-CC-----------CcEEEEEcCCcC
Confidence 5578999999999999999855 689999999999999999999 667655443 23 378999999999
Q ss_pred cCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHH
Q 002941 518 GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLA 597 (863)
Q Consensus 518 G~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 597 (863)
|+|.+++++++...++..+ ++.. +++.++++|.... ++.+.... ....
T Consensus 150 G~t~gals~tg~~~~~~~~--------~~~~--------~~~~~~p~~~~~~--------------~~~~~~~~--~~~~ 197 (442)
T PRK13360 150 GVGFGGISVGGIVPNRKAF--------GALL--------PGVDHLPHTLDLA--------------RNAFSKGQ--PEHG 197 (442)
T ss_pred CccHhhhhccCChhhhhcc--------CCCC--------CCCEEeCCCchhh--------------ccccCCCh--HHHH
Confidence 9999999999866554321 1111 1234455543110 01111100 1222
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhh
Q 002941 598 SIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677 (863)
Q Consensus 598 ~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~ 677 (863)
..+.+.+++.++. .+++++||||+||| ||++|+++||++||++|+++|++||++||+|||||||||||++|++++
T Consensus 198 ~~~~~~le~~l~~----~~~~~~aavivEpi-~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~ 272 (442)
T PRK13360 198 AELADELERLVTL----HDASTIAAVIVEPV-AGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQY 272 (442)
T ss_pred HHHHHHHHHHHHh----cCCCcEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhh
Confidence 3345667777752 34578999999998 999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCc-cceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHH
Q 002941 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (863)
Q Consensus 678 ~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~-~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~ 756 (863)
+|+.|||+||||+|+|||+|+|++++++++++.+..... ...+.|++||++||++||+++++|++++++++.+++.+++
T Consensus 273 ~gv~PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g 352 (442)
T PRK13360 273 FGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTRAARLA 352 (442)
T ss_pred cCCCCceeeeeeccccCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999999999999999999999998864221 1224688999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcH
Q 002941 757 RILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSP 836 (863)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~ 836 (863)
+++++.+ .+ +.+++.|.+|||.|+|+++++...... ....+..+...|+++||++.+.++.+||+||+++|+
T Consensus 353 ~~l~~~l----~~-l~~~~~v~~vrG~Gl~~~~~l~~~~~~---~~~~~~~~~~~l~~~Gvl~~~~~~~lr~~Ppl~~t~ 424 (442)
T PRK13360 353 PYWEDAL----HS-LRDAPHVIDIRNLGLVGAVELAPRDGK---PGKRAYEVFLKCFEKGLMIRYTGDILALSPPLIIEE 424 (442)
T ss_pred HHHHHHH----HH-hhcCCCeeeeeccceEEEEEEecCCCC---cchhHHHHHHHHHHCCcEEEecCCEEEEeCCCccCH
Confidence 8887754 33 345788999999999999999753211 112456788899999999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 837 eeid~~v~~L~~~l~~l 853 (863)
+|||+++++|+++++++
T Consensus 425 ~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 425 AQIDELFDILAQALKET 441 (442)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999754
No 28
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=100.00 E-value=8.7e-70 Score=626.65 Aligned_cols=404 Identities=18% Similarity=0.179 Sum_probs=326.5
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|++|++ |+|+|+||.||| +|||+++|+|++++|| +||+|++|+++|+++..+.....+.+++..+|+++|++.
T Consensus 46 p~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~ 118 (464)
T PRK06938 46 PLALKR--ARGIYVEDVEGR----QFIDCLAGAGTLALGH-NHPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQDLFAS 118 (464)
T ss_pred CceEEe--ccccEEEeCCCC----EEEEccCCccccccCC-CCHHHHHHHHHHHHhhhcccccccCCHHHHHHHHHHHHh
Confidence 456666 889999999999 9999999999999999 899999999999986433222356799999999999999
Q ss_pred cCCCCC--CeEEEe-CChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCC
Q 002941 456 VGKGWA--SRAYFS-DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (863)
Q Consensus 456 ~p~~~~--~~v~f~-~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~ 532 (863)
+|.+.. ++++|+ ||||||||+|||+| |.| +|| ++||+|+++|||+|.+++++++...+
T Consensus 119 ~p~~~~~~~~v~f~~~SGSEAve~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~als~t~~~~~ 179 (464)
T PRK06938 119 LPEAFAREAKIQFCGPTGTDAVEAALKLV-KTA-------TGR-----------STVLSFQGGYHGMSQGALSLMGNLGP 179 (464)
T ss_pred CcccccccceEEEeCCCcHHHHHHHHHHH-HHh-------hCC-----------CeEEEECCccCCccHHHHhhcCCccc
Confidence 885411 377666 89999999999999 666 454 78999999999999999999886544
Q ss_pred CCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 002941 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (863)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i 612 (863)
+.. ++++ .+++.++++|+++++ +++... +.....+.+.+++.+++.
T Consensus 180 ~~~--------~~~~--------~~~~~~~~~p~~~~~---------------~~~~~~--~~~~~~~~~~l~~~i~~~- 225 (464)
T PRK06938 180 KKP--------LGAL--------LPGVQFLPYPYDYRC---------------PFGLGG--EAGVRANLHYLENLLDDP- 225 (464)
T ss_pred ccc--------CCCC--------CCCcEEeCCCccccc---------------cccCch--hhHHHHHHHHHHHHHHhh-
Confidence 321 1111 123456777755421 111110 122233456677777531
Q ss_pred CCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccC
Q 002941 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (863)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLg 692 (863)
..++++|||||+||| ||.+|+++||++||++|+++|++||+|||+|||+|||||||++|+++++|++|||+|+||+||
T Consensus 226 -~~~~~~iAAvI~EPi-qg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gKglg 303 (464)
T PRK06938 226 -ESGVVLPAAVILEVV-QGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAIG 303 (464)
T ss_pred -ccCCCceEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEeecccc
Confidence 112358999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 693 gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
|| +|+|++++++++ +.+.. ..|++||+|||++|||++|+|++++++++.++++++++++++.| .++.+
T Consensus 304 gG-~PlsAv~~~~~~-~~~~~------~~~~~T~~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L----~~l~~ 371 (464)
T PRK06938 304 GS-LPLAVVVYREWL-DTWQP------GAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLREHL----RQLQR 371 (464)
T ss_pred CC-CceEEEeehhHh-hccCC------CCCCCCCCcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHH
Confidence 99 899999999885 65532 25899999999999999999999998888888888888777654 55667
Q ss_pred cCCCeeEecccceEEEEEEccCCcC------CCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHH
Q 002941 773 SHRTVQRVVALGTLCAIELQAAGCN------AGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 773 ~~p~v~~vrg~Gl~~~iel~~~~~~------~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v 843 (863)
++|.|.+|||.|+|++++|.++... .+.....+..+...|+++||++.+. +++++|.||+++|++|||+++
T Consensus 372 ~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~~~~~l~~~Ppl~it~~eid~~~ 451 (464)
T PRK06938 372 DYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILELGGRHGSVVRFLPPLIITAEQIDEVA 451 (464)
T ss_pred hCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHH
Confidence 8999999999999999999754211 1112345677899999999999874 489999999999999999999
Q ss_pred HHHHHHHHHH
Q 002941 844 LKLYQRLEEF 853 (863)
Q Consensus 844 ~~L~~~l~~l 853 (863)
+++++++.++
T Consensus 452 ~~l~~~l~~~ 461 (464)
T PRK06938 452 EIFAEAVAAA 461 (464)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 29
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=100.00 E-value=9.8e-70 Score=621.14 Aligned_cols=375 Identities=21% Similarity=0.283 Sum_probs=319.0
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCe
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASR 463 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~ 463 (863)
++|+|+||.||+ +|||+.+|+|++++|| +||+|++|+.+|++++.+.+ ..+.+++..+|||+|++.+|.+ +++
T Consensus 64 ~~g~~l~D~dG~----~ylD~~~g~~~~~lGh-~hp~v~~Av~~ql~~l~~~~-~~~~~~~~~~lAe~L~~~~p~~-~~~ 136 (442)
T TIGR03372 64 GGLNTLIDTQGN----EFIDCLGGFGIFNVGH-RNPNVIAAVENQLAKQPLHS-QELLDPLRALLAKTLAALTPGK-LKY 136 (442)
T ss_pred CCeeEEEECCCC----EEEECCccHHhhhcCC-CCHHHHHHHHHHHHhCCCcc-cccCCHHHHHHHHHHHHhCCCC-cCE
Confidence 778999999999 9999999999999999 89999999999999987654 2356899999999999999865 579
Q ss_pred EEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccC
Q 002941 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSG 543 (863)
Q Consensus 464 v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~ 543 (863)
|+|+||||||||+|||+| |.|+..+ || ++||+++++|||+|.+++++|+.+.++..
T Consensus 137 v~f~~SGsEA~e~AlklA-r~~t~~~----gr-----------~~ii~~~~~yHG~t~~~ls~t~~~~~~~~-------- 192 (442)
T TIGR03372 137 SFFCNSGTESVEAALKLA-KAYQSPR----GK-----------FTFIAASGAFHGKSLGALSATAKPAFRKP-------- 192 (442)
T ss_pred EEEeCCchHHHHHHHHHH-HHHHhhc----CC-----------cEEEEECCCccCCCHHHhhccCCcccCCC--------
Confidence 999999999999999999 6775322 33 78999999999999999999986655421
Q ss_pred CCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 002941 544 RGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL 623 (863)
Q Consensus 544 ~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAv 623 (863)
+.+. .+++.++++|+. +.+++.+++. ..+++++|||
T Consensus 193 ~~p~--------~~~~~~~p~~d~----------------------------------~~~~~~l~~~--~~~~~~vAav 228 (442)
T TIGR03372 193 FMPL--------LPGFHHVAFGDI----------------------------------EAMLKALNEC--KKTGDDVAAI 228 (442)
T ss_pred CCCC--------CCCCEEeCCCCH----------------------------------HHHHHHHHHH--hcCCCcEEEE
Confidence 1111 123455555531 1222333321 1245789999
Q ss_pred EEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeec
Q 002941 624 IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLA 703 (863)
Q Consensus 624 IvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~ 703 (863)
|+||| ||++|+++||++||++|+++|++||++||+|||||||||||++|+++++|+.|||+||||+|||||+|+|++++
T Consensus 229 IvEpv-~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lg~G~~Pigavv~ 307 (442)
T TIGR03372 229 ILEPI-QGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCLAKALGGGVMPIGATIA 307 (442)
T ss_pred EEeCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeeeehhhhcCCcccceEEEe
Confidence 99998 99999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC-CeeEecc
Q 002941 704 TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR-TVQRVVA 782 (863)
Q Consensus 704 ~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p-~v~~vrg 782 (863)
++++++.+.. .++.|++||+|||++|||++|+|++++++++.++++++++++++.| .++..++| .|.+|||
T Consensus 308 ~~~i~~~~~~----~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L----~~l~~~~~~~i~~vRG 379 (442)
T TIGR03372 308 TEAVFSVLFD----NPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLDGF----QQLAAEYPDLIIEARG 379 (442)
T ss_pred cHHHHHhhhc----cCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----HHHHHhCCCceEEEec
Confidence 9999998853 2356899999999999999999999998888888888888887754 55667888 7899999
Q ss_pred cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 783 LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 783 ~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.|+|++|++.++. ....+++.|+++||++.+. ++.+||.||+++|++|+|+++++|++++
T Consensus 380 ~Gl~~giel~~~~--------~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~~~~l~~~~ 442 (442)
T TIGR03372 380 KGLLMAIEFRDNE--------IGYAFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQCALVIKAAKDAL 442 (442)
T ss_pred ceEEEEEEeCChH--------HHHHHHHHHHHCCcEEeecCCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 9999999998652 4677999999999999764 4899999999999999999999998864
No 30
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=100.00 E-value=1.3e-69 Score=623.95 Aligned_cols=388 Identities=21% Similarity=0.265 Sum_probs=328.0
Q ss_pred eEEEEeecccc-eEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHh
Q 002941 376 VTVIDSRCGEN-FSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (863)
Q Consensus 376 ~~~i~~~~G~G-~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (863)
+.++++ |+| +|+||.||+ +|||+.+|+|+.++|| +||+|++|+++|++++.+.+ ..+.+++..+||++|++
T Consensus 64 ~~~~~~--~~G~~~l~D~dG~----~ylD~~~g~~~~~lGH-~~p~v~~Ai~~ql~~l~~~~-~~~~~~~~~~lae~L~~ 135 (459)
T PRK11522 64 GAVEWQ--AGGLNTLVDTQGQ----EFIDCLGGFGIFNVGH-RNPVVVSAVQNQLAKQPLHS-QELLDPLRAMLAKTLAA 135 (459)
T ss_pred CeeEEe--ccCeEEEEECCCC----EEEECCcCHHhhhcCC-CCHHHHHHHHHHHhhCcccc-cccCCHHHHHHHHHHHH
Confidence 346665 899 999999999 9999999999999999 89999999999999987764 24679999999999999
Q ss_pred hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 455 ~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
++|.+ +++|+|+||||||||+|||+| |.|+..+ | |.+||+++++|||+|.+++++++...|+.
T Consensus 136 ~~p~~-~~~v~f~~SGsEAve~AlklA-r~~t~~~----g-----------r~~ii~~~~~yHG~t~~~ls~~~~~~~~~ 198 (459)
T PRK11522 136 LTPGK-LKYSFFCNSGTESVEAALKLA-KAYQSPR----G-----------KFTFIATSGAFHGKSLGALSATAKSTFRK 198 (459)
T ss_pred hCCCC-CCEEEEeCCchHHHHHHHHHH-HHHhccC----C-----------CcEEEEecCCCCCCcHHHhhhcCCccccc
Confidence 99865 689999999999999999999 6774322 2 27899999999999999999988665542
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
+ +.+.. +++.++++| | .+.+++.|+.. .
T Consensus 199 ~--------~~~~~--------~~~~~~~~~--------------------------d--------~~~l~~~l~~~--~ 226 (459)
T PRK11522 199 P--------FMPLL--------PGFRHVPFG--------------------------N--------IEAMRTALSEC--K 226 (459)
T ss_pred C--------CCCCC--------CCCcccCCC--------------------------C--------HHHHHHHHHHh--h
Confidence 1 11111 122333333 1 12344444321 1
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.+++++||||+||| ||++|+++||++||++|+++|++||++||+|||||||||||++|+++++|+.|||+||||+||||
T Consensus 227 ~~~~~iAavIvEpv-~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggG 305 (459)
T PRK11522 227 KTGDDVAAVILEPI-QGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGG 305 (459)
T ss_pred ccCCcEEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCCEEEechhhhCC
Confidence 23578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
|+|+|++++++++++.+... ++.|++||+|||++||+++|+|++++++++.+++.++++++++.| .++..++
T Consensus 306 ~~Pigav~~~~~i~~~~~~~----~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L----~~l~~~~ 377 (459)
T PRK11522 306 VMPIGATIATEEVFSVLFDN----PFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLLDGF----RQLAREY 377 (459)
T ss_pred CccceeEEEcHHHHHHhccC----CcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 99999999999999987532 356899999999999999999999998888888888888887754 5556678
Q ss_pred C-CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 775 R-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 775 p-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
| .|++|||.|+|+++++.++. .+..+.+.|+++||++.+. ++++||.||+++|++|||+++++|++++
T Consensus 378 ~~~i~~VrG~Gl~~giel~~~~--------~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l 449 (459)
T PRK11522 378 PDLVQEARGKGMLMAIEFVDNE--------IGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQVLKAARKAL 449 (459)
T ss_pred CCceeeEEeceeEEEEEecCch--------HHHHHHHHHHHCCeEEEecCCCCCEEEEECCccCCHHHHHHHHHHHHHHH
Confidence 8 78999999999999998642 4677899999999999875 4899999999999999999999999999
Q ss_pred HHHHHHH
Q 002941 851 EEFDKVE 857 (863)
Q Consensus 851 ~~l~~~~ 857 (863)
+++.+..
T Consensus 450 ~~~~~~~ 456 (459)
T PRK11522 450 AAMRVSV 456 (459)
T ss_pred HHHHHhh
Confidence 8877544
No 31
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=9e-69 Score=617.89 Aligned_cols=411 Identities=23% Similarity=0.295 Sum_probs=335.2
Q ss_pred ccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCC
Q 002941 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP 438 (863)
Q Consensus 359 ~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~ 438 (863)
+++|+|++.. ..+.+|++ |+|+|+||.||+ +|||+++ .|++++|| +||+|++|+++|++++.+.. .
T Consensus 43 ~~~~~~~~~~-----~~~~~i~~--a~G~~l~D~dG~----~ylD~~g-~~~~~lGh-~~p~v~~Ai~~ql~~~~~~~-~ 108 (459)
T PRK06082 43 EVFLHQAMST-----PCLDVLAS--AEGIYIEDVDGK----KYMDFHG-NNVHQLGY-GHPHVIEKVKEQMAKLPFSP-R 108 (459)
T ss_pred HHhcccccCC-----CCCceEEe--eeeeEEEECCCC----EEEEccc-HhhcccCC-CCHHHHHHHHHHHHhCCCcc-C
Confidence 4466765432 12567776 788999999999 9999984 59999999 89999999999999987754 3
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.+++..+|+++|++++|.+ +++|+|+||||||||+|+|+| |+| +|| .+||+|+++|||
T Consensus 109 ~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~-------tgr-----------~~ii~~~~~yHG 168 (459)
T PRK06082 109 RFTNETAIECAEKLTEIAGGE-LNRVLFAPGGTSAIGMALKLA-RHI-------TGN-----------FKVVSLWDSFHG 168 (459)
T ss_pred ccCCHHHHHHHHHHHHhCCCC-CCEEEECCCcHHHHHHHHHHH-HHh-------cCC-----------CEEEEEeCCCcC
Confidence 568999999999999999854 579999999999999999999 666 454 789999999999
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
+|.+++++++.+.++.. +++. .+++.+++.|+.++ ++|. +.+....
T Consensus 169 ~t~~a~s~~~~~~~~~~--------~~~~--------~~~~~~~~~~~~~~---------------~~~~---~~~~~~~ 214 (459)
T PRK06082 169 ASLDAISVGGEACFRQG--------MGPL--------MAGVERIPPAVSYR---------------GAFP---DADGSDV 214 (459)
T ss_pred ccHHHHhhcCCcccccC--------CCCC--------CCCCEEeCCCcccc---------------cccC---ChhHHHH
Confidence 99999999886655421 1111 13455666665442 1111 1122333
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+.+++.+++ .+++||||+||| ||+| +++||++||++|+++|++||++||+|||+|||||||++|+++++
T Consensus 215 ~~~~~l~~~i~~------~~~vAavIvEPv-~g~g-~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~ 286 (459)
T PRK06082 215 HYADYLEYVIEK------EGGIGAFIAEAV-RNTD-VQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAY 286 (459)
T ss_pred HHHHHHHHHHhc------CCCEEEEEECCc-cCCC-CcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhh
Confidence 455667776642 357999999998 9985 78899999999999999999999999999999999999999999
Q ss_pred CCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHH
Q 002941 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRI 758 (863)
Q Consensus 679 gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~ 758 (863)
|++|||+|+||+|||||+|+|++++++++++.+.. .+.| +||++||++|||++|+|++++++++.+++.+++++
T Consensus 287 gv~PDiv~~gKgl~gG~~P~~av~~~~~i~~~~~~-----~~~~-~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~ 360 (459)
T PRK06082 287 GIEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQI-----SLGH-YTHEKSPLGCAAALATIEVIEQEGLLEKVKADSQF 360 (459)
T ss_pred CCCCCEEEecccccCCCCcceEEEEcHHHHhhccC-----CCCC-CCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999998899999999998866532 1345 89999999999999999999888888898888888
Q ss_pred HHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEEecCCCCcHH
Q 002941 759 LRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPE 837 (863)
Q Consensus 759 l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~~ppl~~t~e 837 (863)
+++.| .++.+++|.|++|||.|+|++++|..+..........+..+...|+++||++.+. ++.++++||+++|++
T Consensus 361 l~~~L----~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~i~~~Ppl~it~~ 436 (459)
T PRK06082 361 MRERL----LEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVSQGNVIQLSPPLIITRE 436 (459)
T ss_pred HHHHH----HHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEecCCCEEEEeCCCccCHH
Confidence 88755 4566778999999999999999998543111122234667888999999999886 699999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002941 838 VCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 838 eid~~v~~L~~~l~~l~~ 855 (863)
|||++++++++++.++.+
T Consensus 437 eid~~~~~l~~~l~~~~~ 454 (459)
T PRK06082 437 ELTQALAILEEAIAKICQ 454 (459)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999988754
No 32
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=100.00 E-value=9e-69 Score=617.87 Aligned_cols=405 Identities=19% Similarity=0.178 Sum_probs=325.7
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|+++..+.....+.+++..+||++|++.
T Consensus 41 p~~~~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGH-~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lAe~L~~~ 113 (459)
T PRK06931 41 PLAIAK--AQGVWVTDVEGN----QYLDCLAGAGTLALGH-NHPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLSL 113 (459)
T ss_pred CceEEe--ccccEEEeCCCC----EEEEcccchhhccCCC-CCHHHHHHHHHHHhhhccccccccCCHHHHHHHHHHHHh
Confidence 556666 889999999999 9999999999999999 899999999999987443222346789999999999999
Q ss_pred cCCCC--CCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCC
Q 002941 456 VGKGW--ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (863)
Q Consensus 456 ~p~~~--~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~ 533 (863)
+|... ...+||+||||||||+|||+| |.| +|| ++||+|+++|||+|.+++++++...++
T Consensus 114 ~p~~~~~~~~~f~~~SGsEAve~AlklA-r~~-------tgr-----------~~Ii~~~~~yHG~t~~als~t~~~~~~ 174 (459)
T PRK06931 114 LPGQGKEYCLQFTGPSGADAVEAAIKLA-KTY-------TGR-----------SNVISFSGGYHGMTHGALAVTGNLSPK 174 (459)
T ss_pred CCCccccceEEEeCCCcHHHHHHHHHHH-HHh-------cCC-----------CeEEEECCCcCCccHHHHhhcCCcccc
Confidence 87431 124577799999999999999 666 464 789999999999999999998865544
Q ss_pred CCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 002941 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (863)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~ 613 (863)
.. +.++ .+++.++++|+.++. +++... ++..+.+.+.+++.+++.
T Consensus 175 ~~--------~~~~--------~~~~~~~~~~~~~~~---------------~~~~~~--~~~~~~~~~~~~~~~~~~-- 219 (459)
T PRK06931 175 NA--------VNGL--------MPGVQFMPYPHEYRC---------------PLGIGG--EAGVKALTYYFENFIEDV-- 219 (459)
T ss_pred cC--------CCCC--------CCCcEEeCCCccccc---------------cccCCc--hhHHHHHHHHHHHHHHhh--
Confidence 21 1111 134566777765521 121110 111122233344444321
Q ss_pred CCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCC
Q 002941 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (863)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLgg 693 (863)
..++++|||||+||| ||++|+++||++||++|+++|++||+|||+|||+|||||||++|+++++|++|||+|+||+|||
T Consensus 220 ~~~~~~iAAvI~EPi-qg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~gK~l~g 298 (459)
T PRK06931 220 ESGVRKPAAVILEAI-QGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMSKAVGG 298 (459)
T ss_pred hcCCCceEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEecccccC
Confidence 124578999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +|+|++++++++ +.+.. ..|++||+|||++||+|+|+|++++++++.+++.++++++++.| .++.++
T Consensus 299 G-~Pi~av~~~~~~-~~~~~------~~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~~l~~~L----~~l~~~ 366 (459)
T PRK06931 299 G-LPLAVLGIKKEF-DAWQP------GGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQL----AELQKR 366 (459)
T ss_pred C-cceeeeeeHHHH-hhccC------CCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----HHHHHh
Confidence 9 899999998874 66632 25899999999999999999999998888888888888887754 556678
Q ss_pred CCCeeEecccceEEEEEEccCCcCC------CCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHH
Q 002941 774 HRTVQRVVALGTLCAIELQAAGCNA------GYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 774 ~p~v~~vrg~Gl~~~iel~~~~~~~------~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~ 844 (863)
+|.|.+|||.|+|+++++.++.... +.....+..+...|+++||++.+. ++++++.||+++|++|||++++
T Consensus 367 ~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~eid~~~~ 446 (459)
T PRK06931 367 YPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLERGGRNGNVVRLLPPLLITQAECEEFID 446 (459)
T ss_pred CCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCcCHHHHHHHHH
Confidence 9999999999999999997642111 112345677899999999999875 4899999999999999999999
Q ss_pred HHHHHHHHHH
Q 002941 845 KLYQRLEEFD 854 (863)
Q Consensus 845 ~L~~~l~~l~ 854 (863)
+|+++|.++.
T Consensus 447 ~l~~~l~~~~ 456 (459)
T PRK06931 447 RFEQALLAAV 456 (459)
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 33
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=1.1e-68 Score=616.40 Aligned_cols=406 Identities=19% Similarity=0.216 Sum_probs=331.4
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|+++++ |+|+||||.||+ +|||+.+|+|++++|| +||+|++|+++|++++.+..+..+.+++..+|+|+|++.
T Consensus 36 p~~~~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~ 108 (457)
T PRK05639 36 PLVPKR--GFGALIEDVDGN----VFIDFLAGAAAASTGY-SHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEI 108 (457)
T ss_pred CceEEe--eecCEEEeCCCC----EEEECCcCHHhhccCC-CCHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHhh
Confidence 456766 889999999999 9999999999999999 899999999999999877654334578999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~~ 534 (863)
+|.+ +++|+|+||||||||+|||+| |.| +|| ++||+|+++|||+|.+++++++.. .++.
T Consensus 109 ~p~~-~~~v~f~~SGsEA~e~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~a~s~~~~~~~~~~ 168 (457)
T PRK05639 109 SPIE-NPKVLFGLSGSDAVDMAIKVS-KFS-------TRR-----------PWILAFIGAYHGQTLGATSVAAFQSSQKR 168 (457)
T ss_pred CCCC-cCEEEEeCchHHHHHHHHHHH-HHh-------cCC-----------CeEEEECCCcCCccHHHHHHcCCCccccc
Confidence 9854 579999999999999999999 666 454 789999999999999999988642 2221
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
++.+. .+++.++++|+.++.. +.. ....+.+.+...+.+.+++.+... .
T Consensus 169 --------~~~~~--------~~~~~~~p~~~~~~~~--------~~~-----~~~~~~~~~~~~~~~~le~~l~~~--~ 217 (457)
T PRK05639 169 --------GFSPL--------MPNVVWIPYPNPYRNP--------WGI-----NGYEEPDELINRFLDYLENYVFSH--V 217 (457)
T ss_pred --------CCCCC--------CCCceEeCCCcccccc--------ccc-----cccCCHHHHHHHHHHHHHHHHHHh--h
Confidence 11111 1345567777554210 100 001121233344555666655320 1
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.++++|||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||++|+++++|++|||+||||+|+||
T Consensus 218 ~~~~~iAAvI~EPi-qg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG 296 (457)
T PRK05639 218 VPPDEVAALFAEPI-QGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFGKGVASG 296 (457)
T ss_pred cCCCceEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEEechhhcCC
Confidence 23678999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+.. .+++||++||++|||++|+|++++++++.+++.++++++++.| .++..++
T Consensus 297 -~pi~av~~~~~i~~~~~~-------~~~~T~~g~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L----~~l~~~~ 364 (457)
T PRK05639 297 -MGLSGVIGRKELMDLTSG-------SALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRL----LEMKESF 364 (457)
T ss_pred -CcceeEEehHHHHhhcCC-------CcccCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 799999999999994321 2678999999999999999999998888888888888877744 5566788
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+.+.+|||.|+|+++++..+.. ......+..+.+.|+++||++.+.+ +.+||.||+++|++|||+++++|+++++
T Consensus 365 ~~~~~VrG~Gl~~gve~~~~~~--~~~~~~~~~~~~~~~~~Gv~~~~~g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~ 442 (457)
T PRK05639 365 EVIGDVRGKGLMIGVEIVKENG--KPDPELTGKICWRAFELGLILPSYGMFGNVIRITPPLVITKEIAEKGLEIMERAIK 442 (457)
T ss_pred CCEEeeccceeEEEEEEecCCC--CCCHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999975431 1223456788999999999998764 8999999999999999999999999998
Q ss_pred HHH
Q 002941 852 EFD 854 (863)
Q Consensus 852 ~l~ 854 (863)
++.
T Consensus 443 ~~~ 445 (457)
T PRK05639 443 DAL 445 (457)
T ss_pred HHH
Confidence 875
No 34
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=3.8e-68 Score=611.90 Aligned_cols=401 Identities=24% Similarity=0.279 Sum_probs=324.8
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|++|++ |+|+|+||.||| +|||+.+|+|++++|| +||+|++|+++|++++.+..+..+.+++..+|+++|++.
T Consensus 39 p~~i~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~ 111 (443)
T PRK06058 39 PVYVAR--AGGGIVEDVDGN----RLIDLGSGIAVTSVGN-SAPRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNRL 111 (443)
T ss_pred CceEEe--eeeeEEEeCCCC----EEEEcCcchhhhccCC-CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHh
Confidence 456766 889999999999 9999999999999999 899999999999999876654446789999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~~ 534 (863)
+|..+.++++|+||||||||+|||+| |.| +|| .+||+++++|||+|.+++++++.. .++
T Consensus 112 ~p~~~~~~v~f~~sGseA~e~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~al~~~~~~~~~~- 171 (443)
T PRK06058 112 TPGDHEKRSALFNSGAEAVENAVKIA-RSY-------TGR-----------QAVVVFDHAYHGRTNLTMALTAKSMPYK- 171 (443)
T ss_pred CCCCCCCEEEEeCCcHHHHHHHHHHH-HHh-------hCC-----------CeEEEECCCcCcChHHHHhhcCCCcccc-
Confidence 88543469999999999999999999 667 454 789999999999999999998743 122
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
.++++.. +++.++++|+.++. .+....+..+....+.+.+++.+
T Consensus 172 -------~~~~~~~--------~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~~~~------ 215 (443)
T PRK06058 172 -------SGFGPFA--------PEVYRAPMSYPYRD---------------PKGLATDGEEAAARAITVIEKQV------ 215 (443)
T ss_pred -------cccCCCC--------CCceEcCCCccccc---------------ccccccchHHHHHHHHHHHHHhh------
Confidence 1112111 22334555543310 00000110111122223333322
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
+++++||||+||+ ||+||+++||++||++|+++|++||++||+|||+|||||+|++|+++++|+.|||+|+||+|+||
T Consensus 216 -~~~~iAavi~EPi-~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~gK~l~~G 293 (443)
T PRK06058 216 -GADNLAAVIIEPI-QGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTAKGIAGG 293 (443)
T ss_pred -CCCceEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEcccccCC
Confidence 3578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+... .|++||++||++||||+++|++++++++.+++.++++++.+. |.++..++
T Consensus 294 -~Pi~av~~~~~i~~~~~~~------~~~~T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~----L~~l~~~~ 362 (443)
T PRK06058 294 -LPLSAVTGRAEIMDAPHPG------GLGGTYGGNPVACAAALAAIETIEEDDLVARARQIEALMTDR----LRALAAED 362 (443)
T ss_pred -CccEEEEEcHHHHhhccCC------CCCCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH----HHHHHhhC
Confidence 7999999999999988642 488999999999999999999998888888888777777764 45566778
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+.|.+|||.|+|+++++.++... ......+..+.+.|+++||++.+. ++.+|+.||+++|+++||+++++|+++++
T Consensus 363 ~~i~~vrg~G~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~ 441 (443)
T PRK06058 363 DRIGDVRGRGAMIAIELVKPGTT-EPDAELTKALAAAAHAAGVIVLTCGTYGNVIRLLPPLVIGDELLREGLDVLEAALA 441 (443)
T ss_pred CcEEeeeccceEEEEEEecCCCC-CCcHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999765312 123345778899999999999874 48999999999999999999999999986
Q ss_pred HH
Q 002941 852 EF 853 (863)
Q Consensus 852 ~l 853 (863)
++
T Consensus 442 ~~ 443 (443)
T PRK06058 442 DL 443 (443)
T ss_pred hC
Confidence 53
No 35
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=1.2e-67 Score=607.19 Aligned_cols=406 Identities=20% Similarity=0.258 Sum_probs=336.4
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|+++++ |+|+|+||.||| +|||+.+|+|++++|| +||+|++|+++|++++.+..+..+.+++..+|+++|++.
T Consensus 25 p~~~~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGH-~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~ 97 (445)
T PRK08593 25 PLVIDH--GYGATLTDVDGK----TYIDLLASASSQNVGH-APPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCEL 97 (445)
T ss_pred CceEEe--eeeCEEEeCCCC----EEEECCccHHhhcCCC-CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHh
Confidence 456766 888999999999 9999999999999999 899999999999999888765456899999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCC-CCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP-YTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~-~~~ 534 (863)
+|.++.++|+|+||||||||+|||+| |.| +|| ++||+|+++|||+|.+++++++... ++.
T Consensus 98 ~p~~~~~~v~f~~SGseA~e~AiklA-r~~-------tgr-----------~~ii~~~~~YHG~t~~als~s~~~~~~~~ 158 (445)
T PRK08593 98 APGDFEKRVTFGLSGSDANDGIIKFA-RAY-------TGR-----------PYIISFTNAYHGSTYGSLSMSGISLNMRR 158 (445)
T ss_pred CCCCCCCEEEECCchHHHHHHHHHHH-HHh-------hCC-----------CeEEEECCCcCCCcHHHHhhcCCCccccc
Confidence 98653479999999999999999999 666 454 7899999999999999999987432 221
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
.+++. .+++.++++|+.+++ .+.. ++ .+....+.+.+++.+++.
T Consensus 159 --------~~~~~--------~~~~~~~~~p~~~~~---------------~~~~-~~-~~~~~~~~~~~~~~~~~~--- 202 (445)
T PRK08593 159 --------KYGPL--------LPGFVHIPFPDKYRG---------------MYEE-PD-ANFVEEYLAPLKEMFEKY--- 202 (445)
T ss_pred --------CCCCC--------CCCcEEeCCCccccc---------------cccC-Cc-HHHHHHHHHHHHHHHHhh---
Confidence 11111 134566777765421 1111 11 122233455666666431
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
..++++||||+||| ||++|+++||++||++|+++|++||++||+|||+|||||+|++|+++++|+.|||+|+||+++||
T Consensus 203 ~~~~~iAavI~EPv-~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~gK~l~~G 281 (445)
T PRK08593 203 LPADEVACIVIETI-QGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLAGG 281 (445)
T ss_pred cCCCceEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEeeecccccCC
Confidence 13468999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+... .|++||++||++|||++++|++++++++.+++.++++++++.| .++.+++
T Consensus 282 -~p~gav~~~~~i~~~~~~~------~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L----~~l~~~~ 350 (445)
T PRK08593 282 -MPMSAIVGRKEIMESLEAP------AHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYARKRF----DQWVSKY 350 (445)
T ss_pred -cccEEEEEcHHHHhhhccC------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----HHHHhcC
Confidence 8999999999999988532 3778999999999999999999988888888888888887754 4566789
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
|.|++|||.|+|+++++..+..........+..+...|+++||++.+. ++++||.||+++|++|||+++++++++++++
T Consensus 351 ~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~ 430 (445)
T PRK08593 351 NFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAVAGNVLRFQPPLVITYEQLDTALNTIEQAFTAL 430 (445)
T ss_pred CcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEeccCCCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997543111123345678999999999999874 5999999999999999999999999999887
Q ss_pred HH
Q 002941 854 DK 855 (863)
Q Consensus 854 ~~ 855 (863)
.+
T Consensus 431 ~~ 432 (445)
T PRK08593 431 EA 432 (445)
T ss_pred hc
Confidence 54
No 36
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=1.3e-67 Score=604.75 Aligned_cols=420 Identities=31% Similarity=0.455 Sum_probs=347.1
Q ss_pred hhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhc
Q 002941 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~ 432 (863)
+.+++.+++|+|++++... ..|+++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~--~~p~~~~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~ 74 (423)
T PRK05964 4 LMALDLSHVWHPYTQMKLH--PPPIPIVR--AEGAYLYLADGR----ELIDAISSWWVATHGH-NHPYIDQAIREQLDRL 74 (423)
T ss_pred hhhhhhcceecCCCCcccc--CCCeeEEe--ccccEEEeCCCC----EEEEcchhHHhccCCC-CCHHHHHHHHHHHhhC
Confidence 4445567899998875332 24567776 889999999999 9999999999999999 8999999999999998
Q ss_pred ccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEe
Q 002941 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (863)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~ 512 (863)
.+..+..+++++..+|+++|++.+|.+ +++|+|+||||||||+|||+| |.|+..+|. +|| ++||+|
T Consensus 75 ~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~A~kla-r~~~~~~~~-~~r-----------~~ii~~ 140 (423)
T PRK05964 75 DHVIFAGFTHEPAERLAQRLVALTPGG-LDHVFFSDSGSVAVEVALKMA-LQYWRNRGE-PGR-----------SRFLSL 140 (423)
T ss_pred CCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC-CCC-----------cEEEEE
Confidence 876544578999999999999999854 689999999999999999999 677666664 354 899999
Q ss_pred cCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccC
Q 002941 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (863)
Q Consensus 513 ~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d 592 (863)
+++|||+|.+++++++...++.. | .+. ..++.++++|+. |
T Consensus 141 ~~~yHG~t~~~ls~~~~~~~~~~----~----~~~--------~~~~~~~~~~~~------------------------d 180 (423)
T PRK05964 141 RGGYHGDTIGTMSVGDRGGMHAL----Y----TPL--------LFEQVTAPFPPD------------------------G 180 (423)
T ss_pred cCCcCCccHHHHhcCCCcccccc----c----cCc--------CCCCEEeCCCcc------------------------h
Confidence 99999999999999875544321 1 000 012334455421 1
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc
Q 002941 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (863)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~ 672 (863)
....+.+.+++.+.+ +++++||||+||++|+.+|++++|++||++|+++|++||++||+|||||||||+|++
T Consensus 181 ---~~~~~~~~l~~~l~~-----~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~ 252 (423)
T PRK05964 181 ---YEQATLDALEALLEK-----HAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTL 252 (423)
T ss_pred ---hHHHHHHHHHHHHHh-----CCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcch
Confidence 112235667777753 457899999999449999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhH
Q 002941 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (863)
Q Consensus 673 ~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l 752 (863)
|+++++|+.||++|+||+|+|||+|+|++++++++++.+........+.|++||++||++|++++++|++++++++.+++
T Consensus 253 ~a~~~~~v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~ 332 (423)
T PRK05964 253 FACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERV 332 (423)
T ss_pred hHHHhcCCCCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999998999999999999998863211234568999999999999999999999888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCC
Q 002941 753 IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGP 832 (863)
Q Consensus 753 ~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl 832 (863)
.++++++++.|. ++ .++|.+.++||.|+|+++++.++.. ......+.+.|+++||++.+.++.+||+||+
T Consensus 333 ~~~g~~l~~~l~----~l-~~~~~i~~vrg~Gl~~~i~l~~~~~-----~~~~~~l~~~l~~~Gv~v~~~~~~lR~~p~l 402 (423)
T PRK05964 333 AALSAGLAEGLE----PF-RDLPGVADVRVLGAIGAVELDRPVL-----ERDGPALRAFALERGVLLRPLGNTIYLMPPY 402 (423)
T ss_pred HHHHHHHHHHHH----hh-ccCCCeEEeecccEEEEEEeccCcc-----hhHHHHHHHHHHHCCeEEEecCCEEEEeCCc
Confidence 998888887553 33 4578888999999999999975420 1235678999999999999988999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHH
Q 002941 833 CSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 833 ~~t~eeid~~v~~L~~~l~~l 853 (863)
++|++|||+++++|+++++++
T Consensus 403 ~~t~edId~~v~~l~~al~~~ 423 (423)
T PRK05964 403 IITAEELDRITDAIVEVADEL 423 (423)
T ss_pred ccCHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999764
No 37
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=100.00 E-value=5.3e-67 Score=601.97 Aligned_cols=404 Identities=19% Similarity=0.217 Sum_probs=324.3
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++.+.....+.++...+||++|+++
T Consensus 22 p~~~~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~ 94 (442)
T TIGR00709 22 PTAFAK--AQGCWVTDVEGK----EYLDFLAGAGTLALGH-NHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNI 94 (442)
T ss_pred CceEEe--ccccEEEeCCCC----EEEEccccHhhhcCCC-CCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHh
Confidence 456666 889999999999 9999999999999999 899999999999998765543346789999999999999
Q ss_pred cCCC--CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCC
Q 002941 456 VGKG--WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (863)
Q Consensus 456 ~p~~--~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~ 533 (863)
+|.. ....+||+||||||||+|||+| |.| ||| ++||+++++|||+|.+++++++...++
T Consensus 95 ~p~~~~~~~~~f~~~sGsEA~e~AlklA-r~~-------tgr-----------~~Ii~~~~~yHG~t~~~~s~t~~~~~~ 155 (442)
T TIGR00709 95 IPKRKMDYKLQFPGPSGADAVEAAIKLA-KTY-------TGR-----------TNVISFSGGFHGMTIGALAVTGNLFAK 155 (442)
T ss_pred CCCcCCCccEEEeCCCHHHHHHHHHHHH-HHh-------cCC-----------CeEEEEcCCcCCchHHHHhhcCChhhh
Confidence 8742 1234677799999999999999 667 454 789999999999999999998855443
Q ss_pred CCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 002941 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (863)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~ 613 (863)
.. +.+. .+++.++++|+.++ ++|+... +.....+.+.+++.++.+
T Consensus 156 ~~--------~~~~--------~~~~~~~~~~~~~~---------------~~~~~~~--~~~~~~~~~~~~~~~~~~-- 200 (442)
T TIGR00709 156 NA--------VGML--------MPGVQFMPYPHEYR---------------CPFGIGG--EAGSNASIEYFENFIEDV-- 200 (442)
T ss_pred cc--------CCCC--------CCCcEEeCCCcccc---------------ccccCCc--hhHHHHHHHHHHHHHHhh--
Confidence 21 1111 12334556665442 1111111 111122233344444321
Q ss_pred CCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCC
Q 002941 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (863)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLgg 693 (863)
...++++||||+||+ ||.+|+++||++||++|+++|++||++||+|||+|||||+|++|+++++|+.|||+|+||+|+|
T Consensus 201 ~~~~~~iaavi~Epi-~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~~ 279 (442)
T TIGR00709 201 ESGVDKPAAVILEAI-QGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVGG 279 (442)
T ss_pred ccCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEEcccccC
Confidence 123568999999997 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +|+|+++++++ ++.+.. ..|++||++||++||||+|+|++++++++.+++.++++++.+.| .++.++
T Consensus 280 G-~Pigav~~~~~-~~~~~~------~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L----~~l~~~ 347 (442)
T TIGR00709 280 G-LPLAVLLIAPE-FDAWQP------AGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFL----DDMIKE 347 (442)
T ss_pred C-cccEEEEEchH-HhccCC------CcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHHh
Confidence 9 89999999998 565532 24889999999999999999999988888888888887777644 556678
Q ss_pred CCCeeEecccceEEEEEEccCCcCC------CCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHH
Q 002941 774 HRTVQRVVALGTLCAIELQAAGCNA------GYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 774 ~p~v~~vrg~Gl~~~iel~~~~~~~------~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~ 844 (863)
+|.|++|||.|+|++++|.++.... ......+..+...|+++||++.+. ++++++.||+++|++|+|++++
T Consensus 348 ~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~ei~~~~~ 427 (442)
T TIGR00709 348 HPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPITIDQEECEEGIS 427 (442)
T ss_pred CCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999997642111 112235677889999999999875 5899999999999999999999
Q ss_pred HHHHHHHHH
Q 002941 845 KLYQRLEEF 853 (863)
Q Consensus 845 ~L~~~l~~l 853 (863)
+|+++++++
T Consensus 428 ~l~~~l~~~ 436 (442)
T TIGR00709 428 RFKQAVEEA 436 (442)
T ss_pred HHHHHHHHH
Confidence 999999865
No 38
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=2.7e-66 Score=595.34 Aligned_cols=402 Identities=21% Similarity=0.259 Sum_probs=330.6
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+.+|++++.+..+..+.+++..+|||+|++.
T Consensus 37 p~~~~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~ 109 (441)
T PRK05769 37 PLVIER--GEGVWVEDVDGN----VYLDFNAGIAVTNVGH-AHPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVEI 109 (441)
T ss_pred CeeEEe--cceEEEEeCCCC----EEEECCCchhhcccCC-CCHHHHHHHHHHHHhccCccCcccCCHHHHHHHHHHHHh
Confidence 566765 899999999999 9999999999999999 899999999999999887665556799999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~~ 534 (863)
+|.+++++|+|+||||||||+|||+| |.| +|| ++||+++++|||+|.+++++++.. .++.
T Consensus 110 ~p~~~~~~v~f~~SGsEA~e~AlklA-r~~-------tgr-----------~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~ 170 (441)
T PRK05769 110 APGGFEKKVFFTNSGTESNEAAIKIA-RYH-------TGR-----------KYIIAFLGAFHGRTYGSLSLTASKPVQRK 170 (441)
T ss_pred CCCCCCCEEEECCchHHHHHHHHHHH-HHH-------hCC-----------CeEEEECCCcCCccHHHHHhcCCCccccc
Confidence 98544689999999999999999999 566 454 789999999999999999997642 2221
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
. +.+. .+++.++++|+.++ .+|+. ++.++..+.+.+.+++.+.+ ..
T Consensus 171 ~--------~~~~--------~~~~~~~~~~~~~~---------------~~~~~-~~~~~~~~~~~~~le~~~~~--~~ 216 (441)
T PRK05769 171 G--------FFPL--------MPGVIHVPYPNPYR---------------NPWGI-ENPEECGNAVLDFIEDYLFK--KL 216 (441)
T ss_pred C--------CCCC--------CCCeEEeCCCcccc---------------ccccC-CchHHHHHHHHHHHHHHHHh--hc
Confidence 1 1111 13556677775442 11110 11112223344556653321 01
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.+++++||||+||| ||++|+++||++||++|+++|++||++||+|||+|||||+|++|+++++|+.||++||||+++||
T Consensus 217 ~~~~~iaavi~Epv-~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~K~l~~G 295 (441)
T PRK05769 217 VPPEEVAAIIVEPI-QGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKAIAGG 295 (441)
T ss_pred cCCCceEEEEECcc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEEEcccccCC
Confidence 24678999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+. ..|++||++||++|++++++|+++++ ++.++++++++++++.| .++..++
T Consensus 296 -~p~gav~~~~~i~~~~~-------~~~~~T~~g~p~~~aaa~a~L~~l~~-~~~~~~~~~g~~l~~~L----~~l~~~~ 362 (441)
T PRK05769 296 -LPLGAVIGRAELMFLPP-------GSHANTFGGNPVAAAAALATLEELEE-GLLENAQKLGEYLRKEL----KELKEKY 362 (441)
T ss_pred -cccEEEEEehhhhhcCC-------CCCCCCCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 89999999999986542 24889999999999999999999988 88899998888888755 4556778
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+.+.++||.|+|++++|.++. .......+..+.+.|+++||++.+.+ +.+||.||+++|++|||+++++|+++++++
T Consensus 363 ~~~~~vrg~G~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~Gil~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~ 440 (441)
T PRK05769 363 EFIGDVRGLGLMIGVELVKDR--KEPDPKLRDKVLYEAFKRGLLLLGAGKSAIRIIPPLIITEEEADIGLEILEEAIKEL 440 (441)
T ss_pred CCeeeeecceEEEEEEeccCC--ccccHHHHHHHHHHHHhCCcEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999997643 11223456788999999999998876 899999999999999999999999998753
No 39
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=3.2e-66 Score=591.98 Aligned_cols=397 Identities=23% Similarity=0.271 Sum_probs=330.4
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.+|++ |+|+|+||.||| +|||+++|+|++++|| +||+|++|+++|++++.+.....+.++...+|+|+|++.
T Consensus 23 p~~i~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~ 95 (425)
T PRK07495 23 QIYADR--AENAEIWDKEGR----RYIDFAAGIAVVNTGH-RHPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNAL 95 (425)
T ss_pred CeeEEe--eeecEEEeCCCC----EEEEccccHHhhccCC-CCHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHHh
Confidence 566776 889999999999 9999999999999999 899999999999999887654456789999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~~ 534 (863)
+|.++.++|+|+||||||||+|||+| |.| +|| ++||+|+++|||+|.+++++++.. .++
T Consensus 96 ~p~~~~~~v~f~~SGseA~e~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~~~~~~~~~~~~~- 155 (425)
T PRK07495 96 VPGDFAKKTIFVTTGAEAVENAVKIA-RAA-------TGR-----------SAVIAFGGGFHGRTFMGMSLTGKVVPYK- 155 (425)
T ss_pred CCCCCCCEEEECCchHHHHHHHHHHH-HHh-------hCC-----------CeEEEECCCcCCccHHHhhhcCCCcccc-
Confidence 98653479999999999999999999 566 454 789999999999999999998742 232
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
..++++ .+++.++++|+.++. .+ .+.+.+.+++.+++ .
T Consensus 156 -------~~~~~~--------~~~~~~~~~~~~~~g--------------------~~----~~~~~~~l~~~~~~---~ 193 (425)
T PRK07495 156 -------VGFGAM--------MPDVYHVPFPVELHG--------------------VS----VEQSLAALDKLFKA---D 193 (425)
T ss_pred -------cCCCCC--------CCCeEEecCCccccc--------------------cc----HHHHHHHHHHHHHh---c
Confidence 111211 134566777754310 00 11223455666642 1
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.+++++||||+||+ |+++|++++|++|+++|+++|++||++||+|||+|||||+|++|+++++|+.|||+||||+|+||
T Consensus 194 ~~~~~iaavi~EPv-~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~~G 272 (425)
T PRK07495 194 VDPQRVAAIIIEPV-QGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADLTTMAKGLAGG 272 (425)
T ss_pred cCCCceEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCEEeehhhhcCC
Confidence 24578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+... .+++||++||++||+++++|++++++++.++++++++++++.+ .++.+++
T Consensus 273 -~pigav~~~~~i~~~~~~~------~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L----~~l~~~~ 341 (425)
T PRK07495 273 -FPLAAVTGRAEIMDAPGPG------GLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQRL----ASLRETV 341 (425)
T ss_pred -ccceEEEEcHHHHhccCCC------CcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH----HHHHhhC
Confidence 7999999999999988642 4789999999999999999999988888888888887777754 4556678
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
|.+.+|||.|+|+++++.++... ......+..+.+.|+++||++.+. ++++||.||+++|++++|+++++|+++++
T Consensus 342 ~~i~~vrG~Gl~~~iel~~~~~~-~~~~~~~~~~~~~~~~~Gvl~~~~g~~~~~~r~~Ppl~it~~~id~~~~~l~~~l~ 420 (425)
T PRK07495 342 PEIADIRGPGFMNAVEFNDADSG-LPSAEFANRVRLKALEKGLILLTCGVHGNVIRFLAPITIQDDVFAEALDILEASIL 420 (425)
T ss_pred CCeeeeecCceEEEEEEecCCCC-CccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999764321 122335678899999999999764 48999999999999999999999999998
Q ss_pred HHH
Q 002941 852 EFD 854 (863)
Q Consensus 852 ~l~ 854 (863)
++.
T Consensus 421 ~~~ 423 (425)
T PRK07495 421 EAS 423 (425)
T ss_pred HHh
Confidence 765
No 40
>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-67 Score=545.94 Aligned_cols=381 Identities=23% Similarity=0.337 Sum_probs=320.8
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|+++.. ++|+++||.+|+ +|+||.|++..++-|| |||.|++|+++|++++..++ ..+.++...+++|.+.++
T Consensus 42 pvvf~k--a~g~~vwD~eGk----~ylDflsaysaVnqGh-chpki~~aLqeq~~kLtlss-rafYnd~~~~f~~~vt~l 113 (427)
T KOG1402|consen 42 PVVFSK--AKGSRVWDPEGK----EYLDFLSAYSAVNQGH-CHPKIIKALQEQADKLTLSS-RAFYNDVLGEFAEYVTKL 113 (427)
T ss_pred ceEEEe--cCCcEEECCCcc----chhhhhhhhhhcccCC-CCHHHHHHHHHHHhHhhhhh-HHHhhhhHHHHHHHHHHh
Confidence 345554 899999999999 9999999999999999 99999999999999987654 347889999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHH-HhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKF-SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~-~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~ 533 (863)
+| .++|+-.|||.||+|+|+|+| |+| +..++-+. .+.+|++..++|||+|++++++++.+ .|
T Consensus 114 f~---~~kvlpmnTGaEa~Eta~KLa-R~wgy~~K~ip~-----------nka~il~~~~nFhGrT~~ais~s~d~ds~- 177 (427)
T KOG1402|consen 114 FG---YDKVLPMNTGAEAVETACKLA-RKWGYRKKNIPK-----------NKAKILSAENNFHGRTLGAISLSTDPDSW- 177 (427)
T ss_pred cC---cceeeecccchhHHHHHHHHH-HHHHHhhccCCc-----------cceeEEEecccccCceeeeEEecCCcchh-
Confidence 98 689999999999999999999 555 44444331 24789999999999999999998755 32
Q ss_pred CCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 002941 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (863)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~ 613 (863)
.++++|. |.+ +..++ | +| +++++..|+
T Consensus 178 --------~~fgp~~--P~~-----~~~v~----------------Y----------~d--------~eale~~l~---- 204 (427)
T KOG1402|consen 178 --------DGFGPFL--PGV-----VDKVP----------------Y----------GD--------AEALEVALK---- 204 (427)
T ss_pred --------hccCCCC--CCc-----ceeec----------------c----------CC--------HHHHHHHhc----
Confidence 2345543 221 11111 1 23 356777775
Q ss_pred CCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCC
Q 002941 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (863)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLgg 693 (863)
...+||||+||| ||++|+++||++||+++|+||++|++++|+||||||+||||+++++++.+++||+|.|||+|+|
T Consensus 205 ---~~~vaaFivEPI-QGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~PDivilgKalSG 280 (427)
T KOG1402|consen 205 ---SPNVAAFIVEPI-QGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRPDIVILGKALSG 280 (427)
T ss_pred ---CCCeeEEEeecc-ccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCCCeEEEeccccC
Confidence 378999999997 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
|++|+|++++++++|..+... .|++||+|||++|++|+|+|++++++.+.++.. .|++.|..+|.++..+
T Consensus 281 G~~Pvsavl~~~~im~~~~pg------eHgsTyggNpLg~~vaiAalevi~eekL~era~----~lG~~l~~~L~~l~~~ 350 (427)
T KOG1402|consen 281 GVYPVSAVLADDDIMLNIKPG------EHGSTYGGNPLGCAVAIAALEVIVEEKLVERAA----KLGEILRDQLNKLQKK 350 (427)
T ss_pred CeeeeEEEEecHHHHhccCCC------ccccccCCChHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcccc
Confidence 999999999999999997653 599999999999999999999998876655555 4555555566777778
Q ss_pred CCC-eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 774 HRT-VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 774 ~p~-v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.|. |.+|||+|++.+|++...+.+ ...+..++-.|.++|++..|. |+.+||.||++++++|+++.++++.+++.
T Consensus 351 ~p~~v~~VRGrGl~~ai~i~~~~~~----~~~aw~~cl~lk~~g~LAkptH~~IiRfaPPL~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 351 FPHVVKEVRGRGLLNAIVINPSKTS----GQDAWDVCLALKENGLLAKPTHGNIIRFAPPLVISEEDLREGIEAIEKTIA 426 (427)
T ss_pred ccchhheeeccceEEEEEecccccc----chhHHHHHHcccccccccCCCCCCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence 874 789999999999999854311 134678888999999999986 68999999999999999999999988764
No 41
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-66 Score=559.52 Aligned_cols=400 Identities=30% Similarity=0.416 Sum_probs=319.9
Q ss_pred cccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCC
Q 002941 360 LFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPE 439 (863)
Q Consensus 360 ~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~ 439 (863)
++|++.+.+...-...|.++++ |+|+.+||.||+ +|+|++++||++.+|| +||+|.+|+.+|+.+++|+.+..
T Consensus 23 ~i~~~~~~~~~t~a~~pv~~~~--gkg~kl~D~~g~----EyiD~~ssw~~~~~Gh-anpev~ral~~q~~k~~hs~~~~ 95 (433)
T KOG1401|consen 23 GIVEEKTRIVSTYARYPVVIES--GKGSKLFDPDGK----EYIDFTSSWAVTILGH-ANPEVARALAEQAKKLGHSSNGY 95 (433)
T ss_pred cccccceEEeeecCCCceeeec--ceeeeeecCCcc----eeeeeccceeccccCC-CCHHHHHHHHHHHhhheeccCcc
Confidence 4444444443222233577776 888999999999 9999999999999999 79999999999999999987654
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
++.+ +++|+++|.+..++++.++|||+||||||||+|||+| |+++ ..+.+++ +.+||+|+|||||+
T Consensus 96 ~t~e-av~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~A-rk~~-~~~~~~~-----------~t~~Iaf~nsyHG~ 161 (433)
T KOG1401|consen 96 FTLE-AVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFA-RKFT-GKKHPEK-----------KTKFIAFENSYHGR 161 (433)
T ss_pred ccHH-HHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHH-HHhh-cccCCcc-----------ceeEEEEecCcCCc
Confidence 4455 9999999999998888999999999999999999999 4453 2222111 36899999999999
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
|+|+|++++++.|+-++ +|-. +++... .++|
T Consensus 162 tlgals~~~~s~y~~~~------------~p~~----p~v~~~--------------------------~ynd------- 192 (433)
T KOG1401|consen 162 TLGALSVTGNSKYGLPF------------DPIA----PDVVTA--------------------------EYND------- 192 (433)
T ss_pred chhHHHhhcccccCCCC------------CCCC----Cceeec--------------------------ccCC-------
Confidence 99999999888776322 1100 111111 1233
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
..++++.++. +.++|||||+||+ ||+||+++++++|+..|+.+|+++|++||+|||+|||||+|.+|++++++
T Consensus 193 -~t~l~k~~~~-----h~~~IaAVIvEPi-qGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~ 265 (433)
T KOG1401|consen 193 -STALEKLFES-----HKGEIAAVIVEPI-QGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFG 265 (433)
T ss_pred -HHHHHHHHHh-----CCCceEEEEEecc-cCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhC
Confidence 3567777763 6778999999998 99999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHH
Q 002941 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRIL 759 (863)
Q Consensus 680 v~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l 759 (863)
++|||.|++|.|||| +|+||+++++++++.+..+.. +.|++||+|||++|.++..+|+.+.+++++.++.+.++.|
T Consensus 266 ~~PDI~t~aK~L~gG-lPigA~~v~~kV~~~i~~~~~---l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L 341 (433)
T KOG1401|consen 266 VTPDITTVAKPLGGG-LPIGATGVRDKVAEMISPGDH---LYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKEL 341 (433)
T ss_pred cCCcceeehhhccCC-ceeEEEeehHHHHhhcCCCCc---cccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999987543 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCC-eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-----CEEEEec--C
Q 002941 760 RELWDLELIQQISSHRT-VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-----NVIYLMC--G 831 (863)
Q Consensus 760 ~~~l~~~l~~~~~~~p~-v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-----~~lr~~p--p 831 (863)
++.| .+.+.+.+. +...+|+|+++++++..+. ..+....++.|++..+.+ ..+|+.| +
T Consensus 342 ~~~l----~e~~~~~~~~i~g~~grgl~ig~~~~~p~----------~~~~d~~~~~~ll~~~~~~~~~~~gv~i~P~~~ 407 (433)
T KOG1401|consen 342 RKLL----DEYLKKTPNSICGGVGRGLVIGFEFEGPV----------YKFADAAREQGLLILTLGKGLLEEGVRIAPIYL 407 (433)
T ss_pred HHHH----HHHhccCCCceeeeeeeEEEEEEEEeech----------hhhhhhhhhhhHHHHHHhcccccceEEEecccc
Confidence 8865 455666664 4444999999999997653 222333333333333221 3466666 3
Q ss_pred CCC--cHHHHHHHHHHHHHHHHHHH
Q 002941 832 PCS--SPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 832 l~~--t~eeid~~v~~L~~~l~~l~ 854 (863)
+++ ++|.+++.++++.+.++++.
T Consensus 408 l~~~~~~E~i~~~l~i~~~~l~~~~ 432 (433)
T KOG1401|consen 408 LTVEHTPEVIQRLLTILEKVLSALN 432 (433)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHhc
Confidence 443 58999999999999888764
No 42
>PRK06148 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-65 Score=636.43 Aligned_cols=401 Identities=18% Similarity=0.199 Sum_probs=329.2
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|++|++ |+|+|+||.||+ +|||+.+|+ .++|| +||+|++|+++|++++.+.+ .+.+++..+|||+|++.
T Consensus 607 p~~i~~--g~G~~l~D~dG~----~ylD~~~g~--~~lGH-~hp~v~~Ai~~q~~~l~~~~--~~~~~~~~~lAe~L~~~ 675 (1013)
T PRK06148 607 PIKFVR--GWGVWLIDNRGR----AYLDCFNNV--CHVGH-AHPRVVAAAARQAARLNTNT--RYLHDAIVAYAERLTAT 675 (1013)
T ss_pred CceEEE--eeecEEEECCCC----EEEEcccCh--hhcCC-CCHHHHHHHHHHHhhcCCcC--CcCCHHHHHHHHHHHHh
Confidence 567776 888999999999 999999984 77999 89999999999999974432 56799999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
+|.+ +++|+|+||||||||.|||+| |.| ||| ++||+|+++|||+|.+++++++.. ++.
T Consensus 676 ~p~~-~~~v~f~nSGsEA~e~AlklA-r~~-------tGr-----------~~ii~~~~~YHG~t~~a~s~s~~~-~~~- 733 (1013)
T PRK06148 676 LPDG-LTVAFFVNSGSEANSLALRLA-RAH-------TGQ-----------RDAIVLDHAYHGTTTELIDLSPYK-FNR- 733 (1013)
T ss_pred CCCC-cCEEEEeCCcHHHHHHHHHHH-HHh-------cCC-----------CeEEEEcCCccCCCcchhhcCchh-hcc-
Confidence 9864 689999999999999999999 667 565 789999999999999999998732 221
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
++ ++. ..+++.+++.|++|+ ++|.+ .+ .+....+.+.+++.++.+ ..
T Consensus 734 ---~~----~~~-------~~~~~~~~~~p~~~~--------~~~~~--------~~-~~~~~~~~~~l~~~i~~~--~~ 780 (1013)
T PRK06148 734 ---KG----GKG-------RPDHVEVAEVPDSYR--------GPERW--------PD-AEHGRRFAESVAEQIAAM--AA 780 (1013)
T ss_pred ---cC----CCC-------CCCCceEcCCCCccc--------cCCCC--------Ch-hhhHHHHHHHHHHHHHhh--hc
Confidence 11 110 012344556665442 11211 11 122334455566666431 22
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhcCCCCcEEEeccccCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PDivt~sKgLggG 694 (863)
+++++||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||+ +|+++++|++|||+|+||+||||
T Consensus 781 ~~~~iAAvI~EPv-~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~gK~lggG 859 (1013)
T PRK06148 781 KGRGPAFFIAESI-PSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGNG 859 (1013)
T ss_pred cCCceEEEEEcCC-cCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeeecccccCC
Confidence 4578999999998 999999999999999999999999999999999999999997 89999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+... ..|++||+|||++|||++|+|++++++++.+++.++++++++.| .++.+++
T Consensus 860 -~Plgav~~~~ei~~~~~~g-----~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L----~~l~~~~ 929 (1013)
T PRK06148 860 -HPMGAVVTTREIADSFDNG-----MEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGL----RELQDRF 929 (1013)
T ss_pred -cceEEEEEcHHHHhhccCC-----CccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 7999999999999988642 23789999999999999999999998888888888888887754 5667789
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
|.|++|||.|+|+++++..+..........+..+...|+++||++.+.| ++++|.||+++|+++||+++++|++++.
T Consensus 930 ~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~~~vlr~~Ppl~it~~~id~~l~~l~~~l~ 1009 (1013)
T PRK06148 930 DIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIFSRADADHLLEVLDDVLA 1009 (1013)
T ss_pred CCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999986542222333457789999999999998754 8999999999999999999999999997
Q ss_pred HH
Q 002941 852 EF 853 (863)
Q Consensus 852 ~l 853 (863)
++
T Consensus 1010 ~~ 1011 (1013)
T PRK06148 1010 AA 1011 (1013)
T ss_pred HH
Confidence 65
No 43
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=5.6e-64 Score=576.07 Aligned_cols=403 Identities=22% Similarity=0.231 Sum_probs=332.7
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|+++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++.+..+..+.+++..+||++|++.
T Consensus 24 p~~~~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~ 96 (443)
T PRK08360 24 PLVPVK--AENAKVWDIEGN----EYIDFLSDAAVQNVGH-NNPRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIEI 96 (443)
T ss_pred CceEEe--cceeEEEECCCC----EEEEccccHhhcccCC-CCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHh
Confidence 556766 899999999999 9999999999999999 899999999999999888765556689999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~~ 534 (863)
+|.+ +++|+|+||||||||+|||+| |.| +|| ++||++.++|||+|.+++++++.. .++.
T Consensus 97 ~p~~-~~~v~f~~sGsEAve~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~a~s~~~~~~~~~~ 156 (443)
T PRK08360 97 APGD-NPKVSFGLSGSDANDGAIKFA-RAY-------TKR-----------RKILSYLRSYYGSTYGAMSLTGLDFPVRA 156 (443)
T ss_pred CCCC-CCEEEEcCCHHHHHHHHHHHH-HHh-------cCC-----------CeEEEEeCCcCCcCHHHHHhcCCCccccc
Confidence 9865 579999999999999999999 667 454 789999999999999999987632 1221
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
.+++ + +++.++++|+.++. .+.. +...+...+.+.+++.++. .
T Consensus 157 --------~~~~---~------~~~~~~~~~~~~~~---------------~~~~--~~~~~~~~~~~~~~~~l~~---~ 199 (443)
T PRK08360 157 --------LVGE---L------SDVHYIPYPDCYRC---------------PFGK--EPGSCKMECVEYIKEKFEG---E 199 (443)
T ss_pred --------CCCC---C------CCcEEEeCCccccc---------------cccC--chhhhHHHHHHHHHHHHHh---c
Confidence 1111 1 24456777754421 1110 0011222234556666653 1
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
..++++||||+||+ ||++|++++|++|+++|+++|++||++||+|||||||||+|++|+++++|+.||++||||++++|
T Consensus 200 ~~~~~iAAvi~eP~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitlsK~l~~G 278 (443)
T PRK08360 200 VYAEGVAALFAEPI-QGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITLGKPLGGG 278 (443)
T ss_pred cCCCCeEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEEEecccccCC
Confidence 23578999999997 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+.. ..|.+||++||++|++++++|++++++++.++++++++++++.| .++..++
T Consensus 279 -~pigav~~~~~i~~~~~~------~~~~~T~~~~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L----~~l~~~~ 347 (443)
T PRK08360 279 -LPISATIGRAEIMDSLPP------LAHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRL----EEMKKKH 347 (443)
T ss_pred -ceeEEEEEcHHHHhhhcC------CCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 899999999999998863 24789999999999999999999988888888888888887755 4556678
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
|.+.+|||.|+|++++|.++..........+..+...|+++||++.+. ++++|+.||+++|++|||+++++|+++++++
T Consensus 348 ~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~ 427 (443)
T PRK08360 348 ELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFFSGNVLRIQPPLTIEKEVLDEGLDILEEAIEDV 427 (443)
T ss_pred CCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998643222222334678899999999999864 6999999999999999999999999999987
Q ss_pred H
Q 002941 854 D 854 (863)
Q Consensus 854 ~ 854 (863)
.
T Consensus 428 ~ 428 (443)
T PRK08360 428 E 428 (443)
T ss_pred H
Confidence 5
No 44
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=3.5e-64 Score=575.46 Aligned_cols=394 Identities=22% Similarity=0.285 Sum_probs=326.3
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++.+..+..+.+++..+|+++|+++
T Consensus 23 p~~~~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~ 95 (421)
T PRK06777 23 DFYAER--AENATLWDVEGR----EYIDFAAGIAVLNTGH-RHPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINAL 95 (421)
T ss_pred CeeEEe--eecCEEEeCCCC----EEEEcccCHHhhccCC-CCHHHHHHHHHHHhhcccccccccCChHHHHHHHHHHHh
Confidence 456666 888999999999 9999999999999999 899999999999999887655456789999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~~ 534 (863)
+|.+.+++++|+||||||||+|||+| |.| +|| ++||+|+++|||+|.+++++++.. .++
T Consensus 96 ~p~~~~~~~~f~~sGseA~e~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~~~s~t~~~~~~~- 155 (421)
T PRK06777 96 APIDGPAKTAFFTTGAEAVENAVKIA-RAY-------TGR-----------PGVIAFGGAFHGRTLLTMALTGKVAPYK- 155 (421)
T ss_pred CCCCCCceEEEeCCcHHHHHHHHHHH-HHh-------hCC-----------CeEEEEcCCcCCccHHHHhhcCCCcccc-
Confidence 87433579999999999999999999 666 454 789999999999999999998742 232
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
..++++ .+++.++++|+.++. . . ...+.+.+++.+++ .
T Consensus 156 -------~~~~~~--------~~~~~~~~~p~~~~~---------------------~--~-~~~~~~~l~~~~~~---~ 193 (421)
T PRK06777 156 -------VGFGPF--------PGSIFHALYPNELHG---------------------V--S-VEEALSSVERLFKA---D 193 (421)
T ss_pred -------cCCCCC--------CCCcEEcCCCccccC---------------------c--C-HHHHHHHHHHHHHh---c
Confidence 111221 123455666643210 0 0 11224556666642 1
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.+++++||||+||+ ||++|+.++|++|+++|+++|++||++||+|||+|||||+|++|+++++++.||++|+||+++||
T Consensus 194 ~~~~~iaavi~Epv-~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv~~sK~l~~G 272 (421)
T PRK06777 194 IAPDQVAAILLEPI-QGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLITMAKSLGGG 272 (421)
T ss_pred cCCCceEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEEeeehhhcCC
Confidence 24678999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+... .+++||++||++|++++++|++++++++.+++.++++++.+.| .++..++
T Consensus 273 -~pigav~~~~~i~~~~~~~------~~~~T~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L----~~l~~~~ 341 (421)
T PRK06777 273 -MPISAVVGRAEVMDAPAPG------GLGGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHLVEVL----EKAKASC 341 (421)
T ss_pred -CceEEEEEcHHHHhccCCC------CCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 8999999999999988642 4789999999999999999999988888888888888777755 4555678
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
|.+.+|||.|+|+++++..+... ......+..+...|+++||++.|. ++.+||.||++++++++++++++|++++.
T Consensus 342 ~~i~~vrg~G~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~Gv~i~~~~~~g~~lr~~ppl~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 342 PAIVDIRARGSMVAVEFNDPQTG-KPSPEFTRQYQRQALEEGLLLLSCGVHGNVIRFLYPLTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred CCeEEecCceEEEEEEEecCccC-CccHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 89999999999999999754211 122345677888899999999885 47999999999999999999999998874
No 45
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=100.00 E-value=4.3e-64 Score=574.70 Aligned_cols=394 Identities=22% Similarity=0.270 Sum_probs=326.1
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
++++++ |+|+||||.||+ +|||+.+|+|++++|| +||+|++|+++|++++.+..+..+.+++..+|+++|+++
T Consensus 23 ~~~~~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~ 95 (421)
T PRK09792 23 NFFAQS--AENATLKDVEGN----EYIDFAAGIAVLNTGH-RHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINAL 95 (421)
T ss_pred CeeEEe--ccccEEEeCCCC----EEEEccCchhhhcCCC-CCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHHh
Confidence 456666 888999999999 9999999999999999 899999999999999887665556899999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~~ 534 (863)
+|....++++|+||||||||+|||+| |.| +|| ++||+|+++|||+|.+++++++.. .++
T Consensus 96 ~p~~~~~~~~f~~sGseA~e~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~~~s~~~~~~~~~- 155 (421)
T PRK09792 96 APVSGQAKTAFFTTGAEAVENAVKIA-RAH-------TGR-----------PGVIAFSGGFHGRTYMTMALTGKVAPYK- 155 (421)
T ss_pred CCCCCCceEEEeCChHHHHHHHHHHH-HHh-------cCC-----------CeEEEECCCcCCccHHHHhhcCCCcccc-
Confidence 87432479999999999999999999 566 464 789999999999999999998742 222
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
.+++++. .++.++++|..++. .+ ...+.+.+++.+++ .
T Consensus 156 -------~~~~~~~--------~~~~~v~~p~~~~~--------------------~~----~~~~~~~l~~~~~~---~ 193 (421)
T PRK09792 156 -------IGFGPFP--------GSVYHVPYPSDLHG--------------------IS----TQDSLDAIERLFKS---D 193 (421)
T ss_pred -------cCCCCCC--------CCcEEcCCCccccc--------------------cc----HHHHHHHHHHHHHh---c
Confidence 2222211 23456677643210 00 11234566666653 1
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
..++++||||+||+ |+++|+.++|++|+++|+++|++||++||+|||+|||||+|++|+++++|+.|||+||||+|+||
T Consensus 194 ~~~~~iaavi~EPv-q~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi~t~gK~l~~G 272 (421)
T PRK09792 194 IEAKQVAAIIFEPV-QGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLAGG 272 (421)
T ss_pred cCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcEEEeehhhcCC
Confidence 13578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+... .+++||++||++|+|++++|++++++++.+++++.++++++.+ .++.+++
T Consensus 273 -~pigav~~~~~i~~~~~~~------~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l----~~l~~~~ 341 (421)
T PRK09792 273 -MPLSGVVGNANIMDAPAPG------GLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTL----IDAKESV 341 (421)
T ss_pred -CceEEEEEcHHHHhccCCC------CcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 7999999999999988642 4789999999999999999999988877888877777776644 5556778
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
|.+.++||.|+|++++|.++.... ........+...|+++||++.+. ++.+||.||++++++||++++++|++++.
T Consensus 342 p~v~~vrG~Gl~~~ie~~~~~~~~-~~~~~~~~l~~~~~~~Gv~i~~~g~~~~~irl~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 342 PAIAAVRGLGSMIAAEFNDPQTGE-PSAAIAQKIQQRALAQGLLLLTCGAYGNVIRFLYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred CCcceecccceEEEEEecCCccCC-cchHHHHHHHHHHHHCCcEEeecCCCCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence 989999999999999997543211 12235678999999999999754 48999999999999999999999999874
No 46
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=6.2e-64 Score=576.13 Aligned_cols=400 Identities=24% Similarity=0.289 Sum_probs=329.1
Q ss_pred EEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhc
Q 002941 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGV 456 (863)
Q Consensus 377 ~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~ 456 (863)
.++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++.+.....+.+++..+|+++|++++
T Consensus 27 ~~~~~--~~G~~l~d~dG~----~ylD~~~g~~~~~lGh-~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~ 99 (433)
T PRK08117 27 LPVVK--GEGCYYYGVDGK----EYLDFTSGIAVANVGH-RHPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEIT 99 (433)
T ss_pred ceEEe--eeeeEEEeCCCC----EEEECCcchhhccCCC-CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhC
Confidence 56766 788999999999 9999999999999999 8999999999999998876544567899999999999999
Q ss_pred CCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCC-CCCCCC
Q 002941 457 GKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-SPYTGF 535 (863)
Q Consensus 457 p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~-~~~~~~ 535 (863)
|++ .++|+|+||||||||+|||+| |.| +|| ++||+++++|||+|.+++++++. ..++..
T Consensus 100 ~~~-~~~v~f~~SGseA~e~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~ 159 (433)
T PRK08117 100 PGG-LDCFFFSNSGAEAIEGALKLA-KHV-------TKR-----------PYIISFTGCFHGRTLGALSVTTSKSKYRKY 159 (433)
T ss_pred CCC-CCEEEEeCcHHHHHHHHHHHH-HHh-------cCC-----------CeEEEECCCcCCcCHHHHhhcCCCcccccc
Confidence 654 689999999999999999999 566 454 78999999999999999998763 323211
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+.+. .+++.++++|++++.. ... +.......+.+.+++.+++. .
T Consensus 160 --------~~~~--------~~~~~~~~~~~~~~~~---------------~~~--~~~~~~~~~~~~l~~~~~~~---~ 203 (433)
T PRK08117 160 --------YQPL--------LGSVYQAPYPYCDRCP---------------KGE--DPEVCFLECLRDLESLFKHQ---V 203 (433)
T ss_pred --------CCCC--------CCCcEEeCCCcccccc---------------ccC--chhHHHHHHHHHHHHHHHhc---c
Confidence 1111 1345667777544210 000 00112222345666666531 2
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
.++++||||+||| ||++|+++|+++||++|+++|++||++||+|||||||||+|++|+++++|+.||++|+||+|+||
T Consensus 204 ~~~~~aavi~Epi-~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg~G- 281 (433)
T PRK08117 204 TPEEVAAVIIEPV-LGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIASG- 281 (433)
T ss_pred CCCcEEEEEECCe-eCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCEeehhhhccCC-
Confidence 3568999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+.. ..+++||++||++|+|++++|+++++++++++++++++++++.+ .++..+++
T Consensus 282 ~pigav~~~~~i~~~~~~------~~~~~T~~~np~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L----~~l~~~~~ 351 (433)
T PRK08117 282 LPLSAVVASKELMEQWPL------GSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYALERL----EVLKEKHP 351 (433)
T ss_pred CcceeEEEcHHHHhhccC------CCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----HHHHhcCC
Confidence 899999999999998753 24889999999999999999999987788888888887777654 44556788
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.+.++||.|+|++++|.++. . .........+.+.|+++||++.+.+ +.+|+.||+++|+++|++++++|++++++
T Consensus 352 ~~~~vrg~Gl~~gi~~~~~~-~-~~~~~~~~~~~~~l~~~Gv~~~~~g~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~ 429 (433)
T PRK08117 352 VIGDVRGIGLMIGIEIVDPD-G-EPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEALTE 429 (433)
T ss_pred ceeeeecCCcEEEEEEecCC-C-CcchHHHHHHHHHHHHCCCEEeecCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence 88999999999999998653 1 1122356778899999999997653 89999999999999999999999999876
Q ss_pred H
Q 002941 853 F 853 (863)
Q Consensus 853 l 853 (863)
+
T Consensus 430 ~ 430 (433)
T PRK08117 430 Y 430 (433)
T ss_pred H
Confidence 5
No 47
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=100.00 E-value=6e-64 Score=573.93 Aligned_cols=418 Identities=27% Similarity=0.424 Sum_probs=338.6
Q ss_pred hhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcc
Q 002941 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (863)
Q Consensus 354 ~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~ 433 (863)
.+.+.+++|+||+.... ..++..+++ ++|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~--~~~~~~~~~--a~G~~l~d~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~~~~~~~ 78 (427)
T TIGR00508 8 LAFDQRHIWHPYTSMSS--PLPVYPVES--ADGVELTLDDGR----RLIDGMSSWWAAIHGY-NHPRLNAAAQKQIDKMS 78 (427)
T ss_pred HhccccccccCccCccc--cCCCceEEe--eeeeEEEeCCCC----EEEEccchHHHhcCCC-CCHHHHHHHHHHHHhcC
Confidence 33455678888876521 123455665 788999999999 9999999999999999 89999999999999988
Q ss_pred cccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEec
Q 002941 434 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (863)
Q Consensus 434 ~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~ 513 (863)
+..+..++++...+|+++|++.+|.+ +++|+|++|||||||.|+|+| |.|+..+|. +| |.+||+|.
T Consensus 79 ~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~f~~sGseA~e~AlklA-r~~~~~~~~-~~-----------r~~il~~~ 144 (427)
T TIGR00508 79 HVMFGGFTHKPAIELCQKLVKMTPNA-LDCVFLADSGSVAVEVALKMA-LQYWQAKGE-KN-----------RQKFLTIR 144 (427)
T ss_pred CccccccCCHHHHHHHHHHHhhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhhCC-CC-----------ccEEEEEc
Confidence 76655568999999999999999865 689999999999999999999 567655444 24 37899999
Q ss_pred CCCccCccccceecCCCC-CCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccC
Q 002941 514 GSYHGDTLGAMEAQAPSP-YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (863)
Q Consensus 514 ~sYHG~t~gals~t~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d 592 (863)
++|||+|.+++++++... ++. .|. +. . ++..+++.|... | .
T Consensus 145 ~~yHG~t~~~~s~~~~~~~~~~----~~~----~~--~------~~~~~~~~p~~~-----------~-------~---- 186 (427)
T TIGR00508 145 SGYHGDTFGAMSVCDPENSMHS----LYK----GY--L------PEQIFAPAPQNR-----------F-------D---- 186 (427)
T ss_pred CCcCCccHhhhcccCCcccccc----ccc----cc--C------CCCeEcCCCCcc-----------c-------c----
Confidence 999999999999987432 211 110 00 0 112233333211 0 0
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc
Q 002941 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (863)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~ 672 (863)
........+.+++.+++ .++++||||+|||+|+.||+++++++||++|+++|++||++||+|||||||||+|++
T Consensus 187 -~~~~~~~~~~l~~~l~~-----~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~ 260 (427)
T TIGR00508 187 -EEWNEEAITPLAKLMEL-----HSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKL 260 (427)
T ss_pred -chhHHHHHHHHHHHHHh-----cCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcc
Confidence 01111223556666653 346899999999659999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhH
Q 002941 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (863)
Q Consensus 673 ~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l 752 (863)
|+++++|+.|||+|+||+|+|||+|++++++++++++.+.... ...+.|++||++||++||+++++|++++++++.+++
T Consensus 261 ~~~~~~~v~pDi~~~gK~l~gG~~p~~a~~~~~~~~~~~~~~~-~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~ 339 (427)
T TIGR00508 261 FACEHAGVVPDILCVGKALTGGYMTLSATVTTDKVAQTISSGE-AGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQV 339 (427)
T ss_pred chhhhcCCCCCEEEechhhhcCcccceEEEEcHHHHHHHhcCC-CCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999999999889999999999999987421 123458899999999999999999999888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCC
Q 002941 753 IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGP 832 (863)
Q Consensus 753 ~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl 832 (863)
+++++++++.|+ ++ ..++.+.++||.|+|+++++.++. .+..+.+.|+++||++.+.++.+++.||+
T Consensus 340 ~~~~~~l~~~L~----~l-~~~~~i~~vrg~G~~~~i~~~~~~--------~~~~~~~~l~~~Gv~~~~~~~~l~~~ppl 406 (427)
T TIGR00508 340 SAIENQLKRELS----PL-RKNPVVKDVRVLGAIGVVEMYKPV--------NVEELQKKFVEQGVWIRPFGKLIYVMPPY 406 (427)
T ss_pred HHHHHHHHHHHH----Hh-hcCCCEEeEeccccEEEEEECCcc--------CHHHHHHHHHHCCeEEEecCCEEEEECCC
Confidence 998888888653 33 456778899999999999997532 24678999999999999988999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHH
Q 002941 833 CSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 833 ~~t~eeid~~v~~L~~~l~~ 852 (863)
++|++|||+++++|++++++
T Consensus 407 ~~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 407 IITTEQLQKLTAALIEALHE 426 (427)
T ss_pred CCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999864
No 48
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=100.00 E-value=1e-63 Score=571.96 Aligned_cols=400 Identities=23% Similarity=0.258 Sum_probs=327.3
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++.+..+..+.+++..+||++|+++
T Consensus 16 p~~~~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~ 88 (420)
T TIGR00700 16 PVFAAR--AEGAILEDVDGN----RLIDFASGIAVLNIGH-SHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRI 88 (420)
T ss_pred CeeEEe--eeeeEEEeCCCC----EEEECccCHHhccCCC-CCHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHh
Confidence 566766 889999999999 9999999999999999 899999999999999887654446789999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~~ 534 (863)
+|....++|+|+||||||||+|||+| |.| +|| ++||+|.++|||+|.+++++++.. .++
T Consensus 89 ~p~~~~~~v~f~~sGseA~e~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~~~~~~~~~~~~~- 148 (420)
T TIGR00700 89 APGSGPKKSVFFNSGAEAVENAVKIA-RSY-------TGR-----------PGVVAFDHGFHGRTNMTMALTAKVMPYK- 148 (420)
T ss_pred CCCCCCCEEEEeCCcHHHHHHHHHHH-HHh-------cCC-----------CcEEEECCCcCCCcHHHHHhcCCCcccc-
Confidence 97533579999999999999999999 667 454 789999999999999999998742 122
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
.+++++ + +++.++++|++++.. ... .+ ... ..+.+.+++.+.. .
T Consensus 149 -------~~~~~~--~------~~~~~~~~~~~~~~~---------------~~~-~~-~~~-~~~~~~~~~~~~~---~ 192 (420)
T TIGR00700 149 -------SGFGPF--A------PEVYRAPLPYPYRDG---------------LLD-KQ-LST-DGELAAARAIFVI---D 192 (420)
T ss_pred -------cCCCCC--C------CCcEEeCCCcccccc---------------ccc-cc-hhH-HHHHHHHHHHHHh---h
Confidence 222222 1 234556777554210 000 00 011 1234456655531 1
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.+++++||||+||| ||++|+++++++|+++|+++|++||++||+|||+|||||+|++|+++++|+.||++||||++++|
T Consensus 193 ~~~~~iAavi~Epi-~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~lsK~l~~G 271 (420)
T TIGR00700 193 VGANNVAALVIEPV-QGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLITTAKSLADG 271 (420)
T ss_pred cCCCcEEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEEEeeccccCC
Confidence 34679999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+.. ..+++||++||++|++++|+|++++++++.+++.+.++++++.+ .++.+++
T Consensus 272 -~pig~v~~~~~i~~~~~~------~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~L----~~l~~~~ 340 (420)
T TIGR00700 272 -LPLSGVTGRAEIMDAPAP------GGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTDRL----TTLKAVD 340 (420)
T ss_pred -cceEEEEecHHHHhhcCC------CCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----HHHHhhC
Confidence 899999999999998754 24789999999999999999999988888888887777776644 5556678
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
|.+.++||.|+|+++++.++.. .......+..+.+.|+++||++.|. ++.+||.||+++++++|++++++|+++++
T Consensus 341 ~~~~~vrg~G~~~~i~~~~~~~-~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~~~lRl~p~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 341 PRIGDVRGLGAMIAVELVDPGT-TEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred CCEEEeeccceEEEEEEecCCC-CCccHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 8899999999999999974321 1123345678888999999999885 48999999999999999999999998874
No 49
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=100.00 E-value=1.3e-63 Score=575.63 Aligned_cols=405 Identities=22% Similarity=0.300 Sum_probs=329.8
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
+.++++ |+|+|+||.||| +|||+.+|+|++++|| +||+|++|+++|++++.+..+..+.+++..+|||+|+++
T Consensus 37 ~~~~~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~ 109 (451)
T PRK06918 37 PTFAQS--ANGALVTDVDGN----QYIDFAGAIGTINVGH-SHPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAAL 109 (451)
T ss_pred CceEEe--ccccEEEeCCCC----EEEEcCCchhhcCCCC-CCHHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHh
Confidence 456666 899999999999 9999999999999999 899999999999999887654456799999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~~ 534 (863)
+|.++.++|+|+||||||||+|||+| |.| +|| ++||+|+++|||+|.+++++++.. .++.
T Consensus 110 ~p~~~~~~v~f~~sGseA~e~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~~ls~~~~~~~~~~ 170 (451)
T PRK06918 110 APGSFDKKVLFLNSGAEAVENAVKIA-RKY-------TKR-----------QGIISFSRGFHGRTLMTMTMTSKVKPYKF 170 (451)
T ss_pred CCCCCCCEEEEcCCcHHHHHHHHHHH-HHH-------hCC-----------CcEEEECCCcCccchhhhhhcCCCccccc
Confidence 98653369999999999999999999 667 454 789999999999999999998742 2321
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
.++++ .+++.++|+|++++.. .+. ......+.+.+.+++.++. .
T Consensus 171 --------~~~~~--------~~~~~~~~~~~~~~~~---------------~~~--~~~~~~~~~~~~~~~~~~~---~ 214 (451)
T PRK06918 171 --------GFGPF--------APEVYKAPFPYEYRRP---------------EGL--TEEQYDDFMIEEFKNFFIS---E 214 (451)
T ss_pred --------cCCCC--------CCCcEEcCCCcccccc---------------ccC--chHHHHHHHHHHHHHHHHh---h
Confidence 11211 1244566777544210 000 0012333344555555532 1
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.+++++||||+||+ ||.||+++|+++|+++|+++|++||++||+|||+|||||+|++|+++++++.||+++|||++++|
T Consensus 215 ~~~~~iAavi~EPi-~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~t~sK~l~~G 293 (451)
T PRK06918 215 VAPETIAAVVMEPV-QGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITVSKSLGAG 293 (451)
T ss_pred cCCCceEEEEECcc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEEeeehhhcCC
Confidence 24678999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+.. ..+++||++||++|++++++|++++++++.+++.+.++++.+.+ .++.+++
T Consensus 294 -~pig~v~~~~~i~~~~~~------~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l----~~l~~~~ 362 (451)
T PRK06918 294 -VPISGVIGRKEIMDESAP------GELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRF----EEMKNKY 362 (451)
T ss_pred -CccEEEEEcHHHHhccCC------CCcCcCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----HHHHhhC
Confidence 899999999999998753 24789999999999999999999988878888877777766644 4555578
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+.+.++||.|+|+++++..+..........+..+.+.|+++||++.+.+ +.+||.||+++++++||+++++|++++.
T Consensus 363 ~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~~~~~~lrl~p~l~~t~~~id~~l~~l~~~l~ 442 (451)
T PRK06918 363 NCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTIIEESLQ 442 (451)
T ss_pred CCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHH
Confidence 8889999999999999964321111233457788899999999998864 8999999999999999999999999998
Q ss_pred HHH
Q 002941 852 EFD 854 (863)
Q Consensus 852 ~l~ 854 (863)
++.
T Consensus 443 ~~~ 445 (451)
T PRK06918 443 ACY 445 (451)
T ss_pred HHH
Confidence 764
No 50
>PRK08297 L-lysine aminotransferase; Provisional
Probab=100.00 E-value=1.2e-63 Score=573.46 Aligned_cols=400 Identities=18% Similarity=0.221 Sum_probs=312.1
Q ss_pred EEeecccceEEEEc-CCCcccceEEeeecccccccCCCCCcHHHHH--HHHHHHHhccc--ccCCCCCChHHHHHHHHHH
Q 002941 379 IDSRCGENFSVYQD-QKNKFIGQQFDACASWWTQGPDATLQIELAR--DMGYTAARFGH--VMFPENVYEPALECAELLL 453 (863)
Q Consensus 379 i~~~~G~G~~v~D~-dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~--Ai~~q~~~~~~--~~~~~~~~~~~~eLae~L~ 453 (863)
+++ |+|+|+||. ||+ +|||+++|+|++++|| +||+|++ |+++|++++.+ .....+.+++..+|+++|+
T Consensus 30 i~~--a~G~~l~D~~dG~----~ylD~~~g~~~~~lGh-~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~ 102 (443)
T PRK08297 30 LER--SQGSYLVDARTGR----RYLDMFTFFASSALGM-NHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFA 102 (443)
T ss_pred EEe--ccCCEEEECCCCC----EeeecccCHhhhcCCC-CChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHH
Confidence 444 899999995 999 9999999999999999 8999999 99999998763 2223567899999999999
Q ss_pred hhc-CCCCCCeEEEeCChhhHHHHHHHHHHHHHHhh----cccc-ccccCCCccccccccEEEEecCCCccCccccceec
Q 002941 454 QGV-GKGWASRAYFSDNGSTAIEIALKMAFRKFSFD----HEVL-VDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ 527 (863)
Q Consensus 454 ~~~-p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~----~G~~-tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t 527 (863)
+++ |.+ +++|+|+||||||||+|||+| |+|+.+ +|.+ ++ |++||+|+++|||+|.++++++
T Consensus 103 ~~~~p~~-~~~v~f~~SGsEAve~AlKlA-r~~~~~~~~~~g~~~~~-----------r~kii~~~~~yHG~t~~als~~ 169 (443)
T PRK08297 103 RVLGDPE-LPHLFFVDGGALAVENALKVA-FDWKSRKNEARGIDPAL-----------GTKVLHLRGAFHGRSGYTLSLT 169 (443)
T ss_pred hhcCCCC-CCEEEEeCchHHHHHHHHHHH-HHHhhccccccCCCCCC-----------CceEEEECCCcCCcchhhhhhc
Confidence 988 443 689999999999999999999 667532 2321 12 3899999999999999999998
Q ss_pred CCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHH
Q 002941 528 APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQN 607 (863)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~ 607 (863)
+...++.. ++ +..+.+ +++.|+.. |++... ...+...+...+.+.+++.
T Consensus 170 ~~~~~~~~----~~----~~~~~~---------~~~~~~~~-----------~~~~~~---~~~~~~~~~~~~~~~~~~~ 218 (443)
T PRK08297 170 NTDPRKTA----RF----PKFDWP---------RIDNPKLR-----------FPLPGE---DLEEVEALEAEALAQARAA 218 (443)
T ss_pred CCcccccc----cC----CCCCcc---------ccCCCCCC-----------CCCccc---ccchhhHHHHHHHHHHHHH
Confidence 75332210 00 000000 11222110 000000 0001112223345666777
Q ss_pred HhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe
Q 002941 608 LLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY 687 (863)
Q Consensus 608 l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~ 687 (863)
+++ +++++||||+||| ||++|+++||++||++|+++|++||++||+|||+|||||+|++|+++++|++|||+||
T Consensus 219 i~~-----~~~~iAavI~EPi-~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~ 292 (443)
T PRK08297 219 FER-----HPHDIACFIAEPI-QGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVAF 292 (443)
T ss_pred HHh-----CCCcEEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEEe
Confidence 753 5689999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHH
Q 002941 688 GKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (863)
Q Consensus 688 sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l 767 (863)
||++ |++++++++++.+.....-. ....|++||++||++|++++++|++++++++.+++.++++++++.|
T Consensus 293 gK~l-----~~~a~l~~~~i~~~~~~~~~-~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L---- 362 (443)
T PRK08297 293 GKKT-----QVCGIMAGRRVDEVEDNVFA-VSSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARL---- 362 (443)
T ss_pred cccc-----cccceecchHHHHhhhhhcc-CccccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----
Confidence 9997 45667777776554321000 0124889999999999999999999988888888888888887754
Q ss_pred HHHHhcCCCee-EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHH
Q 002941 768 IQQISSHRTVQ-RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 768 ~~~~~~~p~v~-~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~ 845 (863)
.++.+++|.+. +|||.|+|+++++.+. .....+++.|+++||++.|.+ +.+||+||+++|++|||+++++
T Consensus 363 ~~l~~~~~~~~~~vrg~G~~~~i~~~~~--------~~~~~~~~~l~~~Gvl~~~~~~~~lr~~P~l~~t~~eid~~l~~ 434 (443)
T PRK08297 363 EELAAEFPAVVSNVRGRGLMCAFDLPTT--------ADRDEVIRRLWEEGVLVLPCGERSIRFRPALTVTTEEIDAAIDA 434 (443)
T ss_pred HHHHHHCCCcceeeeccceEEEEEecCH--------HHHHHHHHHHHHCCEEEecCCCCeEEEECCccCCHHHHHHHHHH
Confidence 45566788665 9999999999999643 245678999999999999876 7999999999999999999999
Q ss_pred HHHHHHHH
Q 002941 846 LYQRLEEF 853 (863)
Q Consensus 846 L~~~l~~l 853 (863)
|+++++++
T Consensus 435 l~~~l~~~ 442 (443)
T PRK08297 435 LRRALPEV 442 (443)
T ss_pred HHHHHHhh
Confidence 99998765
No 51
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=100.00 E-value=1.6e-63 Score=567.07 Aligned_cols=382 Identities=23% Similarity=0.318 Sum_probs=323.0
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|+++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++.+... .+.+++..+|+|+|++.
T Consensus 23 ~~~~~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~la~~L~~~ 94 (408)
T PRK04612 23 QVVLER--GQGSRVWDDQGR----EYLDLAAGIAVCGLGH-NDPDLVAALTEQAGKLWHTSN-VFYSAPPLKLAEELVTA 94 (408)
T ss_pred CceEEE--eeeCEEEECCCC----EEEEcCccHhhccCCC-CCHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHhh
Confidence 456666 788999999999 9999999999999999 899999999999999877643 46789999999999998
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
+|. .++|+|++|||||||+|||+| |+|+..+|++++ |++||+|+++|||+|++++++++.+.++..
T Consensus 95 ~~~--~~~v~f~~sGseA~e~AlklA-r~~~~~~g~~~~-----------r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~ 160 (408)
T PRK04612 95 SRF--AEKVFLCNSGTEANEAAIKLV-RKWASSQGRPAD-----------KRVIVTFRGSFHGRTLAAVTATAQPKYQEG 160 (408)
T ss_pred CCC--CCEEEEcCchHHHHHHHHHHH-HHHHHhhCCCCC-----------CcEEEEECCCcCCccHHHHHhcCCcccccC
Confidence 874 479999999999999999999 678765554323 378999999999999999999886655421
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+.+. | +++.++++| | .+.+++.++
T Consensus 161 --------~~~~---~-----~~~~~~~~~--------------------------d--------~~~l~~~~~------ 184 (408)
T PRK04612 161 --------YEPL---P-----GGFRYVDFN--------------------------D--------VEALEAAMA------ 184 (408)
T ss_pred --------CCCC---C-----CCceEcCCC--------------------------C--------HHHHHHhhC------
Confidence 1111 0 122223322 1 133444442
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++++|||+||+ |+.||+++++++|+++|+++|++||++||+|||+|||||+|.+|+++++++.||++||||+++||
T Consensus 185 -~~~~aavi~eP~-~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~K~l~~G- 261 (408)
T PRK04612 185 -GGDVAAVMLEPI-QGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKALGGG- 261 (408)
T ss_pred -CCCEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEcchhcCC-
Confidence 468999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+... .+++||++||++|++++++|++++++++.+++.++++++++.| .++.++++
T Consensus 262 ~piga~~~~~~~~~~~~~~------~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l----~~l~~~~~ 331 (408)
T PRK04612 262 FPIGAMLAGPKVAETMQFG------AHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALRAGL----EALNAEFG 331 (408)
T ss_pred CceEEEEECHHHHhhhcCC------CcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----HHHHhhCC
Confidence 8999999999998887642 4789999999999999999999988888888888888887754 45667789
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.+.++||.|+|+++++..+. ...+..+.+.|+++||++.+.| +.+|+.||+.+|++|||+++++|++++.++.
T Consensus 332 ~i~~vrg~Gl~~~i~~~~~~------~~~a~~i~~~l~~~Gvlv~~~g~~~lRl~Ppl~it~eeid~~l~~l~~~l~~~~ 405 (408)
T PRK04612 332 VFAQVRGRGLMLGAVLAPAH------AGQAGAILDLAAEHGLLLLQAGPDVLRFVPALNLTDAELADGLARLRLALADYV 405 (408)
T ss_pred CeeeeeccceEEEEEecCch------hhHHHHHHHHHHHCCeEEeeCCCCEEEEcCCccCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999997431 1246678899999999999887 9999999999999999999999999998754
No 52
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=100.00 E-value=7.2e-64 Score=560.33 Aligned_cols=354 Identities=21% Similarity=0.274 Sum_probs=300.1
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
+.++++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++.+.. ..+.+++..+|+++|+++
T Consensus 7 ~~~~~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~~-~~~~~~~~~~la~~l~~~ 78 (364)
T PRK04013 7 RLRLVR--GEGIYVWDSQGR----RYLDLIAGIGVNVLGH-NHPEWVEEMSEQLEKLVVAG-PMFEHEEKEEMLEELSKW 78 (364)
T ss_pred CccEEE--eecCEEEECCCC----EEEEcccChhhccCCC-CCHHHHHHHHHHHHhcCCcc-CCcCCHHHHHHHHHHHhh
Confidence 446666 788999999999 9999999999999999 89999999999999987764 357899999999999998
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
++ .++++|+||||||||.|||+| |.| +|| ++||+++++|||+|.+++++++.+.++..
T Consensus 79 ~~---~~~v~~~~SGseA~e~Alkla-r~~-------~gr-----------~~Ii~~~~syHG~t~~~ls~~~~~~~~~~ 136 (364)
T PRK04013 79 VN---YEYVYMGNSGTEAVEAALKFA-RLY-------TGR-----------KEIIAMTNAFHGRTMGALSATWKPKYRED 136 (364)
T ss_pred cC---CCEEEEeCchHHHHHHHHHHH-HHH-------hCC-----------CEEEEECCccccCchhhccCCCCcccccC
Confidence 85 579999999999999999999 566 354 78999999999999999999886655431
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+.+.. .++.++++| | .+.+++.+.
T Consensus 137 --------~~p~~--------~~~~~~~~~--------------------------d--------~~~l~~~i~------ 160 (364)
T PRK04013 137 --------FEPLV--------PGFKHIPFN--------------------------D--------VEAAKEAIT------ 160 (364)
T ss_pred --------CCCCC--------CCcEEecCC--------------------------C--------HHHHHHHhc------
Confidence 11111 122233332 1 123444442
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++||||+||+ ||+||++++|++||++|+++|++||++||+|||+||| |+|++|+++++|+.|||+|+||+|+||
T Consensus 161 --~~~aAvivEpi-~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~a~~~~gv~PDiv~~gK~lggG- 235 (364)
T PRK04013 161 --KETAAVIFEPI-QGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVEPDIVTMGKGIGNG- 235 (364)
T ss_pred --CCcEEEEEcCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchhHHHhcCCCCCEEEecccccCC-
Confidence 47999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|+++.++++. . ..|++||++||++|||++|+|++++++++.+++.+. + .++ ..+
T Consensus 236 ~P~~a~~~~~~~~----~------~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~-------l----~~l--~~~ 292 (364)
T PRK04013 236 VPVSLTLTNFDVE----R------GKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK-------F----IEI--KGE 292 (364)
T ss_pred ceeEEEEeccccc----C------CCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH-------H----HHh--ccC
Confidence 8999999988761 1 248899999999999999999999988887776553 1 111 237
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.|++|||.|+|+++|+..+ +..+.+.|+++||++.+.| +++||.||+++|++|+|+++++|+++++++
T Consensus 293 ~v~~vRG~Gl~~gve~~~~----------~~~i~~~~~~~Gll~~~~g~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~ 361 (364)
T PRK04013 293 RVVTTRGRGLMIGIVLKKP----------VGKYVEELQNRGYLVHTAGQRVIRLLPPLIISKDTMEEAKSAIEGVINDI 361 (364)
T ss_pred cceeeeeCcEEEEEEeCCc----------HHHHHHHHHhCCcEEeeCCCCEEEEeCCcccCHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999642 4568899999999999877 899999999999999999999999999764
No 53
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=100.00 E-value=8.3e-64 Score=573.27 Aligned_cols=400 Identities=18% Similarity=0.174 Sum_probs=307.5
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHH--HHhcccccCCCCCChHHHHHHHHHH
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYT--AARFGHVMFPENVYEPALECAELLL 453 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q--~~~~~~~~~~~~~~~~~~eLae~L~ 453 (863)
|+.+++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++| ..++.+.. .+.+++..+|+++|+
T Consensus 41 p~~~~~--a~G~~l~D~dG~----~ylD~~sg~~~~~lGh-~~p~i~~Ai~~q~~~~~l~~~~--~~~~~~~~~la~~l~ 111 (464)
T TIGR00699 41 LADYEK--SRGNYLVDVDGN----RLLDLYSQISSIPIGY-NNPALLKAAQSPEMATTLINRP--ALGNFPSKDWAKILK 111 (464)
T ss_pred ceEEEe--cccCEEEeCCCC----EEEEccCCHhhhcCCC-CCHHHHHHHHHHHHHHhhcccc--cCCcHHHHHHHHHHH
Confidence 455665 889999999999 9999999999999999 899999999995 44554432 467888999999985
Q ss_pred h----hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccc-----ccccCCCc-----cccccccEEEEecCCCccC
Q 002941 454 Q----GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVL-----VDFLGKDT-----TEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 454 ~----~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~-----tgr~~~~~-----~~~~~r~~II~~~~sYHG~ 519 (863)
+ ++|.+ +++|+|+||||||||+|||+| |.|+..+|+. |||. ++. .....|.+||+|+++|||+
T Consensus 112 ~~l~~~~p~~-~~~v~f~~SGsEAvE~AlKlA-r~~~~~~~r~~~~~~t~~~-~~~~~~~~~~g~~r~~ii~~~~syHG~ 188 (464)
T TIGR00699 112 EGILKVAPKG-QDQVWTGMSGSDANELAFKAA-FMYYRSKQRGYQADFSEEE-NESCMDNQAPGSPDLSILSFKGAFHGR 188 (464)
T ss_pred HhHHhhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcCCCccccccccc-ccccccccccCCcCCEEEEECCCcCCc
Confidence 4 67754 689999999999999999999 5676543321 1210 000 0000135899999999999
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhc-ccCchhHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYE-ERDSSDLAS 598 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~ 598 (863)
|.+++++++.+.++.. .+|. .++.++|+|+ ++ +++.. ..+......
T Consensus 189 t~~als~t~~~~~~~~-------------~~~~----~~~~~~p~p~-~~---------------~~~~~~~~~~~~~~~ 235 (464)
T TIGR00699 189 LFGSLSTTRSKPIHKL-------------DIPA----FDWPQAPFPS-LK---------------YPLEEHVKENAKEEQ 235 (464)
T ss_pred cHHHHHhcCCcccccc-------------CCCC----CCceecCCCC-cc---------------cccccccccchhHHH
Confidence 9999999875433211 0111 1223455553 10 00000 000012223
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+.+++.|++ ++++|||||+||| ||++|+++||++||++|+++|++||++||+|||+|||||||.+|+++++
T Consensus 236 ~~l~~l~~~l~~-----~~~~iAAvI~EPv-~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~ 309 (464)
T TIGR00699 236 RCLEEVEDLIKK-----WHKPVAAIIVEPI-QSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHW 309 (464)
T ss_pred HHHHHHHHHHHh-----cCCcEEEEEEeCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhc
Confidence 345667777753 3567999999998 9999999999999999999999999999999999999999999999999
Q ss_pred CCC--CcEEEeccccC-CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHH
Q 002941 679 GCV--PDIACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (863)
Q Consensus 679 gv~--PDivt~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~ 755 (863)
|+. |||+|+||+|+ ||| + +.+ +. +... ..+.|++||++||++||+++|+|++++++++.+++.++
T Consensus 310 gv~~~PDi~t~gK~lg~gG~-~----~~~-~~---~~~~---~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~ 377 (464)
T TIGR00699 310 NLDDPPDMVTFSKKFQTAGY-F----FHD-PA---FRPN---KPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHV 377 (464)
T ss_pred CCCCCCCEEEehhhhccCCc-c----ccc-hh---ccCC---CCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 997 99999999995 685 2 222 22 2211 12468999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHhcCC-CeeEec--ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecC
Q 002941 756 RRILRELWDLELIQQISSHR-TVQRVV--ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCG 831 (863)
Q Consensus 756 ~~~l~~~l~~~l~~~~~~~p-~v~~vr--g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~pp 831 (863)
++++++.| .++.+++| .|++|| |.|+|+++++.+. ..+..+.+.|+++||++.+.| +.+||.||
T Consensus 378 g~~l~~~L----~~l~~~~~~~i~~vRg~G~Glm~gie~~~~--------~~~~~i~~~~~~~Gvl~~~~g~~~ir~~Pp 445 (464)
T TIGR00699 378 GDYLYTGL----EDLQKKYPEFIQNLRGKGRGTFIAWDTPDE--------AKRDKLLKKARNNGVNIGGCGVKAIRLRPM 445 (464)
T ss_pred HHHHHHHH----HHHHHhCCCceeeecccCeEEEEEEecCCH--------HHHHHHHHHHHHCCcEEecCCCCeEEEeCC
Confidence 88887754 45566789 799999 9999999998532 246789999999999999877 89999999
Q ss_pred CCCcHHHHHHHHHHHHHHH
Q 002941 832 PCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 832 l~~t~eeid~~v~~L~~~l 850 (863)
+++|++|||+++++|++++
T Consensus 446 l~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 446 LVFQKHHADIFLEIISKII 464 (464)
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 9999999999999998864
No 54
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=100.00 E-value=2.5e-63 Score=569.59 Aligned_cols=385 Identities=17% Similarity=0.243 Sum_probs=312.2
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++.+. .+.+++..+|+++|++.
T Consensus 36 p~~~~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~---~~~~~~~~~la~~l~~~ 105 (428)
T PRK12389 36 PVVMER--GKGAYFYDVDGN----KYIDYLAAYGPIITGH-AHPHITKAITEAAENGVLY---GTPTELEIEFAKMLKEA 105 (428)
T ss_pred CeEEEe--ccCCEEEeCCCC----EEEEccccccccccCC-CCHHHHHHHHHHHHhCCcc---CCCCHHHHHHHHHHHHh
Confidence 566666 889999999999 9999999999999999 8999999999999987653 46789999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
+|. +++|+|+||||||||+|||+| |.| +|| ++||+|+++|||+|.+++++++...++..
T Consensus 106 ~p~--~~~v~f~~sGseA~e~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~~~~~~~~~~~~~~ 164 (428)
T PRK12389 106 IPS--LEKVRFVNSGTEAVMTTIRVA-RAY-------TGR-----------TKIIKFAGCYHGHSDLVLVAAGSGPSTLG 164 (428)
T ss_pred CCC--CcEEEEeCCHHHHHHHHHHHH-HHh-------hCC-----------CEEEEECCCcCCChHHHHHhcCCcccccC
Confidence 873 689999999999999999999 667 454 78999999999999999999874432210
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
.+...+ +..+ . .+.+.+++++ | .+.+++.+++
T Consensus 165 --~~~~~~---~~~~-~---~~~~~~~~~~--------------------------d--------~~~l~~~l~~----- 196 (428)
T PRK12389 165 --TPDSAG---VPKS-I---AQEVITVPFN--------------------------D--------IEALKEALDK----- 196 (428)
T ss_pred --CCCCCC---CCCc-c---cCceEEcCCC--------------------------C--------HHHHHHHHHh-----
Confidence 000000 0000 0 0112222221 2 1345566643
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++++||||+||| ||++|+++||++||++|+++|++||++||+|||+||| |+|.+|+++++|++|||+|+||+|+||
T Consensus 197 ~~~~vaavi~EPv-~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv~PDivt~gK~lggG- 273 (428)
T PRK12389 197 WGDEVAAVLVEPI-VGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGVEPDLTALGKIIGGG- 273 (428)
T ss_pred cCCcEEEEEEeCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCCCCCeeeechhhcCC-
Confidence 3468999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+.... ...|++||++||++|||++|+|+++++++++++++++++++++.| .++.+++|
T Consensus 274 ~Pi~av~~~~~i~~~~~~~~---~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~~~~~~g~~l~~~L----~~l~~~~~ 346 (428)
T PRK12389 274 LPIGAYGGRKDIMEQVAPLG---PAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGI----LEAAEKHG 346 (428)
T ss_pred CceeEEeEHHHHHhhhccCC---CcccccCCccCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH----HHHHHhCC
Confidence 89999999999999986321 246889999999999999999999988888899888888888755 45566788
Q ss_pred CeeEe-cccceEEEEEEccCCcC-----CCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 776 TVQRV-VALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 776 ~v~~v-rg~Gl~~~iel~~~~~~-----~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
.+.++ |+.| |+++++.++... ...+...+..+...|+++||++.+.+ +. +.||+++|++|||++++++++
T Consensus 347 ~~~~v~r~~g-~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~--~~~~l~~t~e~id~~~~~l~~ 423 (428)
T PRK12389 347 ITITINRLKG-ALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSKYEA--WFLTTAHTEEDIEETLEAVDR 423 (428)
T ss_pred CCEEEEecCc-EEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCCCCC--eeecCCCCHHHHHHHHHHHHH
Confidence 87777 7888 888999754311 01122346788999999999998865 33 358999999999999999999
Q ss_pred HHHH
Q 002941 849 RLEE 852 (863)
Q Consensus 849 ~l~~ 852 (863)
++++
T Consensus 424 ~l~~ 427 (428)
T PRK12389 424 AFAQ 427 (428)
T ss_pred HHHh
Confidence 9865
No 55
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=100.00 E-value=2.4e-63 Score=567.07 Aligned_cols=386 Identities=22% Similarity=0.288 Sum_probs=314.3
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|+++..+.....+.+++..+|+|+|++.
T Consensus 18 p~~~~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~ 90 (412)
T TIGR02407 18 PTVFEK--AKGSTLWDEDGK----EYIDFFAGAGALNYGH-NNPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNEI 90 (412)
T ss_pred CceEEe--cccCEEEeCCCC----EEEEcccchhhccCCC-CCHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHHh
Confidence 456666 889999999999 9999999999999999 899999999999998766554445789999999999997
Q ss_pred c--CCCCCCeEEE-eCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCC
Q 002941 456 V--GKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (863)
Q Consensus 456 ~--p~~~~~~v~f-~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~ 532 (863)
+ |.+...+++| +||||||||+|||+| |.| +|| ++||+|+++|||+|.+++++++...+
T Consensus 91 ~~~~~~~~~~~~f~~~sGseA~e~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~als~~~~~~~ 151 (412)
T TIGR02407 91 ILKPRGLDYKVQFPGPTGTNAVESALKLA-RKV-------TGR-----------SNVVSFTNAFHGMTLGSLSVTGNRFK 151 (412)
T ss_pred ccCccCCCceEEEeCCCchHHHHHHHHHH-hhh-------cCC-----------CeEEEECCCcCCchHHHHHhcCCccc
Confidence 5 4322235655 599999999999999 566 454 78999999999999999999886544
Q ss_pred CCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 002941 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (863)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i 612 (863)
+.. ++ ++. .++.++|+|+.. .+ ...+.+.+++.+++.
T Consensus 152 ~~~--------~~----~~~----~~~~~~p~~~~~----------------------~~----~~~~~~~l~~~~~~~- 188 (412)
T TIGR02407 152 RQG--------AG----VPL----SNVSRMPYDGYL----------------------GG----DVDTIAYFEKLLEDS- 188 (412)
T ss_pred ccC--------CC----CCC----CCeEECCCCCcc----------------------cc----chhHHHHHHHHHHhc-
Confidence 321 11 111 133445555311 00 011234566666531
Q ss_pred CCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccC
Q 002941 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (863)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLg 692 (863)
..+.+++||||+||| ||++|+++||++||++|+++|++||++||+|||+|||||||++|+++++++.||++|+||+|+
T Consensus 189 -~~~~~~~aavi~Epi-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~~~K~lg 266 (412)
T TIGR02407 189 -SSGVDLPAAVILETV-QGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVCLSKSIS 266 (412)
T ss_pred -cCCCCceEEEEeccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEEechhcc
Confidence 112367999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHH-hcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 002941 693 G-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKW-FKDPQTNHNIIPERRILRELWDLELIQQ 770 (863)
Q Consensus 693 g-G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~-l~~~~l~~~l~~~~~~l~~~l~~~l~~~ 770 (863)
| | +|+|++++++++ +.+.. ..|++||++||++|+++.++|++ ++++++.+++.+.++++++.+ .++
T Consensus 267 ~~G-~pigav~~~~~~-~~~~~------~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~~l----~~l 334 (412)
T TIGR02407 267 GYG-LPLALTLIKPEL-DVWKP------GEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERL----DRI 334 (412)
T ss_pred CCc-cceeEEEEchhh-hccCC------CccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHH
Confidence 8 8 899999999987 55532 25889999999999999999995 778778888888777777654 455
Q ss_pred HhcCC-CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHH
Q 002941 771 ISSHR-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 771 ~~~~p-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L 846 (863)
.++++ .+.++||.|+|+++++.+.. .+..+...|+++||++.+.+ +.+|+.||+++|++|+|+++++|
T Consensus 335 ~~~~~~~~~~vrg~Gl~~~l~l~~~~--------~~~~~~~~~~~~Gv~v~~~~~~~~~lr~~p~l~~t~~~i~~~~~~l 406 (412)
T TIGR02407 335 VAEYPELIKQVRGRGLMQGIECGDGD--------LAGKIAKAAFENGLIIETSGPNDEVIKLLPPLTIDEETLQQGLDIL 406 (412)
T ss_pred HhhCCCceEeeecceeEEEEEecChH--------HHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 66777 67899999999999997542 46788999999999997643 89999999999999999999999
Q ss_pred HHHHHH
Q 002941 847 YQRLEE 852 (863)
Q Consensus 847 ~~~l~~ 852 (863)
++++++
T Consensus 407 ~~~l~~ 412 (412)
T TIGR02407 407 EQAVEE 412 (412)
T ss_pred HHHHhC
Confidence 998853
No 56
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=100.00 E-value=4.5e-63 Score=567.20 Aligned_cols=391 Identities=20% Similarity=0.252 Sum_probs=317.7
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++.+.....+.+++..+|+|+|++.
T Consensus 22 p~~~~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~ 94 (425)
T PRK09264 22 PVVFDK--AKGSWLYDEDGK----EYIDFFAGAGALNYGH-NNPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEET 94 (425)
T ss_pred CccEEe--eecCEEEeCCCC----EeeecccchhhccCCC-CCHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHh
Confidence 456665 889999999999 9999999999999999 899999999999998766654456789999999999997
Q ss_pred c--CCCCCCeEEE-eCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCC
Q 002941 456 V--GKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (863)
Q Consensus 456 ~--p~~~~~~v~f-~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~ 532 (863)
+ |.+...+++| +||||||||+|||+| |.| +|| ++||+|+++|||+|.+++++|+...+
T Consensus 95 ~~~~~~~~~~~~f~~~sGseA~e~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~~ls~~~~~~~ 155 (425)
T PRK09264 95 ILKPRGLDYKVQFTGPTGTNAVEAALKLA-RKV-------TGR-----------TNIVAFTNGFHGMTLGSLAVTGNSHK 155 (425)
T ss_pred hcCCcCCCceEEEeCCCHHHHHHHHHHHH-HHh-------cCC-----------CeEEEECCccCCccHHHHHhcCCccc
Confidence 5 3232236766 589999999999999 666 454 78999999999999999999886544
Q ss_pred CCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 002941 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (863)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i 612 (863)
+.. ++ ++. .++.++|+|++++ .+ ....+.+++.|++.
T Consensus 156 ~~~--------~~----~~~----~~~~~~p~~~~~~---------------------~~-----~~~~~~l~~~l~~~- 192 (425)
T PRK09264 156 RQG--------AG----VPL----NNVTRMPYDGYFG---------------------GD-----VDTLAYLEKLLEDS- 192 (425)
T ss_pred ccC--------CC----CCC----CCeEEeCCCCccc---------------------cc-----hhHHHHHHHHHHhc-
Confidence 321 11 111 2345566664220 00 01134566666531
Q ss_pred CCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccC
Q 002941 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (863)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLg 692 (863)
..+.+++||||+||| ||++|++++|++||++|+++|++||++||+|||||||||+|++|+++++|+.||++|+||+|+
T Consensus 193 -~~~~~~~aavi~Epv-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t~~K~l~ 270 (425)
T PRK09264 193 -SSGVDLPAAVIVETV-QGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTLSKSIS 270 (425)
T ss_pred -cCCCCceEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEEEeccccC
Confidence 112357999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHH-HHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 002941 693 G-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSI-KWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (863)
Q Consensus 693 g-G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL-~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~ 770 (863)
+ | +|+|++++++++. .+.. ..|++||++||++|++++++| ++++++++.++++++++++++.+ .++
T Consensus 271 ~~G-~pigav~~~~~i~-~~~~------~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~~l----~~l 338 (425)
T PRK09264 271 GYG-LPMALVLIKPELD-VWKP------GEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERL----EEI 338 (425)
T ss_pred CCc-cceEEEEEchhhh-ccCC------CccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHH
Confidence 8 7 8999999999973 4432 247899999999999999999 67777778888888888887754 444
Q ss_pred HhcCCC-eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHH
Q 002941 771 ISSHRT-VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 771 ~~~~p~-v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L 846 (863)
.+++|. +.++||.|+|+++++.+.. ....+.+.|+++||++.+.+ ++|||.||+++|+++|++++++|
T Consensus 339 ~~~~~~~~~~vrg~Gl~~~i~l~~~~--------~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~p~l~~t~~ei~~~~~~l 410 (425)
T PRK09264 339 AAKYPGLGAEVRGRGMMQGIDFGDGE--------LAGKIAAEAFENGLIIETSGPEDEVVKLLPPLTIDEEELEEGLDIL 410 (425)
T ss_pred HHhCCCceecceecccEEEEEecChH--------HHHHHHHHHHHCCCEEeccCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 556774 5889999999999996432 46788999999999998754 89999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 002941 847 YQRLEEFDKVE 857 (863)
Q Consensus 847 ~~~l~~l~~~~ 857 (863)
+++++++.+.+
T Consensus 411 ~~~l~~~~~~~ 421 (425)
T PRK09264 411 EEAVAEVLAEE 421 (425)
T ss_pred HHHHHHHHhcc
Confidence 99998875443
No 57
>PRK06149 hypothetical protein; Provisional
Probab=100.00 E-value=8e-63 Score=613.36 Aligned_cols=399 Identities=19% Similarity=0.190 Sum_probs=322.7
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+++|+ .++|| +||+|++|+.+|++++.+.+ .+.++.+.+|+|+|+++
T Consensus 568 p~~i~~--g~G~~l~D~dG~----~ylD~~~~~--~~lGh-~hp~v~~Ai~~q~~~l~~~~--~~~~~~~~elae~L~~~ 636 (972)
T PRK06149 568 PPQIER--GWRHHLFDMAGR----SYLDMVNNV--TVLGH-GHPRLAAAAARQWSLLNTNS--RFHYAAVAEFSERLAAL 636 (972)
T ss_pred CCeEEE--eeeeEEEeCCCC----EEEECCCCc--cccCC-CCHHHHHHHHHHHHhccccc--cccCHHHHHHHHHHHHh
Confidence 446666 788999999999 999999885 37999 89999999999999986543 35789999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
+|.+ +++|+|+||||||||+|||+| |.| +|| ++||+++++|||+|.+++++++....+.
T Consensus 637 ~p~~-~~~v~f~~SGsEA~e~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~ga~~~s~~~~~~~- 695 (972)
T PRK06149 637 APDG-LDTVFLVNSGSEANDLAIRLA-WAA-------SGR-----------RDVVSVLEAYHGWTVATDAVSTSIADNP- 695 (972)
T ss_pred CCCC-cCEEEEeCCchHHHHHHHHHH-HHh-------cCC-----------CeEEEEeCCCCCcChhHhhhcCCccccc-
Confidence 9865 689999999999999999999 667 454 7899999999999999998875321110
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
.+.. . ...++..++.|+.++. +|.. ++ ....+.+.+++.++.. ..
T Consensus 696 ---~~~~---~--------~~~~v~~~~~p~~~~~---------------~~~~-~~---~~~~~~~~~~~~l~~~--~~ 740 (972)
T PRK06149 696 ---QALE---T--------RPDWVHPVESPNTYRG---------------RFRG-AD---SAADYVRDVVAQLEEL--DA 740 (972)
T ss_pred ---cccC---C--------CCCCeEEeCCCcccCC---------------cCCC-cc---cHHHHHHHHHHHHHHH--hh
Confidence 0100 0 0123445566654421 1111 11 0112334444444432 12
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhcCCCCcEEEeccccCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PDivt~sKgLggG 694 (863)
+++++||||+||| ||++|++++|++||++|+++|++||++||+|||||||||+|+ +|+++++|+.|||+||||+||||
T Consensus 741 ~~~~iAavI~Epv-~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~gK~lg~G 819 (972)
T PRK06149 741 SGRGLAGFICEPV-YGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGNG 819 (972)
T ss_pred cCCceEEEEEccc-ccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEecccccCC
Confidence 4678999999998 999999999999999999999999999999999999999998 77999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+.... .+.+||+|||++||+++|+|++++++++.+++.++++++++.| .++.+++
T Consensus 820 -~Pl~av~~~~~i~~~~~~~~-----~~~sT~~gnP~~~aaala~L~~i~~e~l~~~~~~~G~~l~~~L----~~l~~~~ 889 (972)
T PRK06149 820 -HPLGAVITRREIAEALEAEG-----YFFSSTGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKARL----EALADRH 889 (972)
T ss_pred -eeeEEEEEcHHHHhhhccCC-----cccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 79999999999999986421 3567899999999999999999998888888888887777754 5566789
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
|.|++|||.|+|++++|..+..+.......+..++..|+++||++.+.| ++++|.||+++|+++||+++++|+++++
T Consensus 890 ~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g~~~~vl~~~Ppl~it~~~id~~~~~l~~~l~ 969 (972)
T PRK06149 890 PLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTGDHLNILKIKPPLCLDRESADFFVDMLDRVLT 969 (972)
T ss_pred CCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999975432222333457789999999999999876 8999999999999999999999999987
Q ss_pred H
Q 002941 852 E 852 (863)
Q Consensus 852 ~ 852 (863)
+
T Consensus 970 ~ 970 (972)
T PRK06149 970 E 970 (972)
T ss_pred h
Confidence 5
No 58
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=100.00 E-value=1.3e-62 Score=557.87 Aligned_cols=372 Identities=23% Similarity=0.288 Sum_probs=305.1
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
+.++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+.+|++++.+... .+.+++..+|+++|.+.
T Consensus 19 ~~~~~~--~~G~~~~d~dG~----~~lD~~sg~~~~~lGh-~~p~v~~a~~~q~~~~~~~~~-~~~~~~~~~la~~l~~~ 90 (395)
T PRK03715 19 DIVFTH--GKGSWLYDHNGK----RYLDFIQGWAVNCLGH-CNPGMVEALAAQAEKLINPSP-AFYNEPMAKLAGLLTQH 90 (395)
T ss_pred CceEEe--eecCEEEECCCC----EEEECCcChhhccCCC-CCHHHHHHHHHHHHhcccccc-cccCHHHHHHHHHHhhc
Confidence 456665 788999999999 9999999999999999 899999999999999877643 46789999999999987
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
.+ .++++|+||||||||+|+|+| |.|+. ++. +| |++||+++++|||+|.+++++++...++..
T Consensus 91 ~~---~~~v~f~~SGseA~e~Aik~a-r~~~~-~~~-~~-----------r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~ 153 (395)
T PRK03715 91 SC---FDKVFFANSGAEANEGAIKLA-RKWGR-KHK-NG-----------AYEIITFDHSFHGRTLATMSASGKPGWDTI 153 (395)
T ss_pred cC---CCEEEEeCCcHHHHHHHHHHH-HHHhh-ccC-CC-----------CcEEEEECCCcCCChHHHHhhcCCcccccC
Confidence 54 579999999999999999999 56643 221 23 378999999999999999999886544321
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+ .+. .+ ++.+.++ +| .+.+++.++
T Consensus 154 ~--------~~~--~~------~~~~~~~--------------------------~d--------~~~l~~~l~------ 177 (395)
T PRK03715 154 F--------APQ--VP------GFPKAEL--------------------------ND--------IASVEKLIT------ 177 (395)
T ss_pred C--------CCC--CC------CceeeCC--------------------------ch--------HHHHHHHcC------
Confidence 1 110 00 1111111 11 234454442
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++++||+||+ ||++|+++||++||++|+++|++||++||+|||||||||+|++|+++++|+.|||+||||+||||
T Consensus 178 --~~~aavi~Epv-~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t~gK~lg~G- 253 (395)
T PRK03715 178 --DKTVAVMLEPV-QGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTLGKGIGGG- 253 (395)
T ss_pred --CCceEEEEeCC-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCceeeehhhhhCC-
Confidence 46899999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|+++++++++. +.. ..|++||++||++||+++++|++++++++.++++++++++++.| .++..+++
T Consensus 254 ~p~~av~~~~~i~~-~~~------~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L----~~l~~~~~ 322 (395)
T PRK03715 254 VPLAALLAKAEVAV-FEA------GDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKL----LELSEERG 322 (395)
T ss_pred cceEEEEEcccccc-ccC------CCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----HHHhhcCC
Confidence 89999999999863 222 14789999999999999999999988888889988888888755 44555666
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHC---CcEEEec-CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED---GVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~---GV~~~p~-g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+.++||.|+|++|++.++. ...+...+++. ||++.+. ++++||.||+++|++|||+++++|+++++
T Consensus 323 -i~~vrG~Glm~~i~l~~~~---------~~~~~~~~~~~~~~Gi~~~~~~~~~lR~~p~l~~t~~ei~~~~~~l~~~l~ 392 (395)
T PRK03715 323 -LEGERGEGLLRALLLGKDI---------GPQIVEKARDMQPDGLLLNAPRPNLLRFMPALNVTTEEIDQMIAMLRSVLD 392 (395)
T ss_pred -cCeEEcceeEEEEEecCch---------HHHHHHHHHhccCCCEEEeecCCCEEEEeCCcccCHHHHHHHHHHHHHHHH
Confidence 6789999999999997531 23444445544 9999754 58999999999999999999999999987
Q ss_pred HH
Q 002941 852 EF 853 (863)
Q Consensus 852 ~l 853 (863)
++
T Consensus 393 ~~ 394 (395)
T PRK03715 393 KL 394 (395)
T ss_pred hh
Confidence 64
No 59
>PRK07046 aminotransferase; Validated
Probab=100.00 E-value=1.7e-61 Score=556.13 Aligned_cols=427 Identities=18% Similarity=0.149 Sum_probs=332.3
Q ss_pred HHHHHHHHHHHHHHhHhhcChhhhhccccccc--CCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeeccccc
Q 002941 333 DSLKNIMLLAYSERIQRLCDMPKRAGELFWWP--FTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT 410 (863)
Q Consensus 333 ~~l~~~L~~~~~~r~~~~~~~~~~~~~~l~~p--~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~ 410 (863)
...+..+..++.++..++..+.+++++.+... ++....+....|+++++ |+|+|+||+||| +|||+.+|+|+
T Consensus 13 ~~~~~~~~~~~~~~~~~S~~l~~ra~~~~p~g~~~~~~~~~~~~~p~~~~~--a~G~~v~D~DG~----~yiD~~~g~g~ 86 (453)
T PRK07046 13 AALLARERARFLEAHPRSRALAARAAQHLLGGVPMHWMNDWPTPFPLFVAE--ARGARFTDVDGH----RYDDFCLGDTG 86 (453)
T ss_pred HHHHHHHHHHHHhcChhhHHHHHHHHhhCCCCcccccccccCCCCCCeEEe--eeeCEEEeCCCC----EEEEecccccc
Confidence 33444456667777778888888888877542 22222232234666766 888999999999 99999999999
Q ss_pred ccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcc
Q 002941 411 QGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (863)
Q Consensus 411 ~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G 490 (863)
+++|| +||+|++|+.+|+++..+. .+.++...+|||+|++.+| .++|+|+||||||||.|||+| |.|
T Consensus 87 ~~lGh-~~p~i~~Av~~q~~~~~~~---~~~~~~~~~lAe~l~~~~~---~~~v~F~nSGtEA~e~AlrlA-R~~----- 153 (453)
T PRK07046 87 AMFGH-SPAPVARALAEQARRGLTT---MLPSEDAAWVGEELARRFG---LPYWQVATTATDANRFVLRWA-RAV----- 153 (453)
T ss_pred cccCC-CCHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHHHHhC---CCEEEEECCHHHHHHHHHHHH-HHh-----
Confidence 99999 8999999999999987543 4578999999999999886 689999999999999999999 677
Q ss_pred ccccccCCCccccccccEEEEecCCCccCccccceec--CCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchh
Q 002941 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ--APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWL 568 (863)
Q Consensus 491 ~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~ 568 (863)
||| ++||.|+++|||++.+++... +...++. . +...|.. ..+.+..++
T Consensus 154 --TGr-----------~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~--------~---~~g~~~~-~~~~~~~~~----- 203 (453)
T PRK07046 154 --TGR-----------PKILVFNGCYHGTVDDVFVDLVDGRPVQRP--------G---LLGQVHD-LTATTRVVE----- 203 (453)
T ss_pred --hCC-----------CEEEEECCCCCCCcHHhHhhccCCCCCCCC--------C---CCCCCcc-ccCceEeeC-----
Confidence 565 889999999999987766432 2111110 0 0000000 000111111
Q ss_pred hhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHH
Q 002941 569 YSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVK 648 (863)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lre 648 (863)
.+| .+.+++.+. ++++||||+||+ ||++|+++|+++||++|++
T Consensus 204 ---------------------~nd--------~~~l~~~l~-------~~~vAavi~EPi-~g~~G~~~p~~~fl~~lr~ 246 (453)
T PRK07046 204 ---------------------FND--------LAALEAALA-------DGDVAAVLAEPA-MTNIGMVLPEPGFHEALRE 246 (453)
T ss_pred ---------------------CCC--------HHHHHHHhC-------CCCeEEEEECCC-CCCCCCcCCCHHHHHHHHH
Confidence 123 234555552 367999999998 9999999999999999999
Q ss_pred HHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCC---ccceeecccC
Q 002941 649 ECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS---KLKALLHGHS 725 (863)
Q Consensus 649 lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~---~~~~~~~~~T 725 (863)
+|+|||+|||+|||+| | |+|..++.+++|++|||+||||+|||| +|+|++++++++++.+.... ....+.|++|
T Consensus 247 lc~~~g~llI~DEV~t-f-r~g~Gg~~~~~gv~PDi~t~gK~lggG-~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T 323 (453)
T PRK07046 247 LTRRYGTLLVIDETHT-I-SSGPGGYTRAHGLEPDFLVVGKPIAGG-VPCAVYGFSAELAERAQAAKASAPPGHSGIGTT 323 (453)
T ss_pred HHHHhCCEEEEEcccc-C-ccCCcchhHHhCCCccceeehhhhcCC-CcceeeeehHHHHHHHhhccccCCCCCceeCCC
Confidence 9999999999999999 6 688777888999999999999999999 89999999999999986311 0123468899
Q ss_pred CCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcC------CC
Q 002941 726 YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN------AG 799 (863)
Q Consensus 726 ~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~------~~ 799 (863)
|++||++|||++++|++++++++++++.+.++++++.| .++.++++.+..|+|.|+++.+++.++... ..
T Consensus 324 ~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L----~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~ 399 (453)
T PRK07046 324 LSANALAMAAMRATLAEVMTEAAYAHMLALAARLAAGL----RAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAA 399 (453)
T ss_pred CcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH----HHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcc
Confidence 99999999999999999988888899988888888754 556678888889999999999998643211 01
Q ss_pred CchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 800 YGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 800 ~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
........++..|+++||++.|.++.++++|+ +|++|||+++++++++++++.
T Consensus 400 ~~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~p~--~t~~did~~~~~~~~~l~~~~ 452 (453)
T PRK07046 400 LDPELEAALHLYLLNRGVLITPFHNMMLVCPA--TTAADVDRLVAAFDACLGELL 452 (453)
T ss_pred cCHHHHHHHHHHHHHCCCEEecccCcEEEeCC--CCHHHHHHHHHHHHHHHHHHh
Confidence 12234567888999999999987777777764 999999999999999998753
No 60
>PLN00144 acetylornithine transaminase
Probab=100.00 E-value=7.3e-62 Score=549.84 Aligned_cols=377 Identities=23% Similarity=0.319 Sum_probs=315.4
Q ss_pred cccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCC
Q 002941 383 CGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS 462 (863)
Q Consensus 383 ~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~ 462 (863)
+|+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++.+... .+.+++..+|+|+|++..+ .+
T Consensus 3 ~~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~la~~l~~~~~---~~ 73 (382)
T PLN00144 3 SGKGCKLYDVEGK----EYLDMAAGIAVNALGH-GDPDWVKAVAEQAGTLAHVSN-VYHTIPQVELAKRLVASSF---AD 73 (382)
T ss_pred eeeccEEEeCCCC----EEEECCcCHHhccCCC-CCHHHHHHHHHHHHhcCCccc-cccCHHHHHHHHHHHhcCC---CC
Confidence 3789999999999 9999999999999999 899999999999999877653 3568999999999999875 57
Q ss_pred eEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCccc
Q 002941 463 RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYS 542 (863)
Q Consensus 463 ~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~ 542 (863)
+|+|+||||||||+|||+| |.|+.++|...++ ...+.|.+||+|+++|||+|.+++++++...++..+
T Consensus 74 ~v~f~~sGseA~e~AlklA-r~~~~~~~~~~~~-----~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~------ 141 (382)
T PLN00144 74 RVFFCNSGTEANEAAIKFA-RKYQRVRAPDKKD-----PAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPF------ 141 (382)
T ss_pred eEEEeCCcHHHHHHHHHHH-HHHHhccCCCCcc-----ccccccceEEEECCCcccccHHHHhcCCCccccccC------
Confidence 9999999999999999999 6786555432110 000114789999999999999999998866554311
Q ss_pred CCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 002941 543 GRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622 (863)
Q Consensus 543 ~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAA 622 (863)
.+. . +++.+++++ | .+.+++.++ .++++|
T Consensus 142 --~~~--~------~~~~~~~~~--------------------------d--------~~~l~~~~~-------~~~~aa 170 (382)
T PLN00144 142 --EPL--M------PGVTFVEYG--------------------------N--------LEAARKLIQ-------KGKTAA 170 (382)
T ss_pred --CCC--C------CCeEEeCCC--------------------------C--------HHHHHHhcC-------CCCeEE
Confidence 111 1 122333332 1 134444442 368999
Q ss_pred EEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeee
Q 002941 623 LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATL 702 (863)
Q Consensus 623 vIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~ 702 (863)
||+||+ ||+||+..++++|+++|+++|++||++||+|||+|||||+|++|+++++++.|||+||||+|+|| +|+|+++
T Consensus 171 vi~eP~-q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PDi~t~sK~l~~G-~pig~v~ 248 (382)
T PLN00144 171 VFVEPV-QGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTLAKPLAGG-LPIGAVL 248 (382)
T ss_pred EEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCCEEEecccccCC-cceEEEE
Confidence 999998 99999999999999999999999999999999999999999999999999999999999999999 7999999
Q ss_pred ccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc
Q 002941 703 ATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA 782 (863)
Q Consensus 703 ~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg 782 (863)
+++++++.+... .+++||++||++|++++|+|++++++++.+++++.++++++ .+.+++.++|.+.+|||
T Consensus 249 ~~~~~~~~~~~~------~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~----~l~~~~~~~~~~~~vrg 318 (382)
T PLN00144 249 VTEKVASAINPG------DHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRE----LLRRKLGGNPHVKEVRG 318 (382)
T ss_pred EcHHHHhccCCC------CCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH----HHHHHHhhCCCceeeec
Confidence 999999988642 47899999999999999999999988888888888877765 44556778888899999
Q ss_pred cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 783 LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 783 ~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.|+|++++|... +..+...|+++||++.+.+ +.+|+.||++++++++++++++|++++.++
T Consensus 319 ~G~~~~l~l~~~----------~~~~~~~~~~~Gv~i~~~~~~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~~ 381 (382)
T PLN00144 319 VGLLVGIQLDVP----------AGPLVDACRDSGLLVLTAGKGDVVRLVPPLVISEAELEQAVEILADCLPAL 381 (382)
T ss_pred CceEEEEEecCc----------cHHHHHHHHHCCeEEeecCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHhc
Confidence 999999999321 3568899999999999864 899999999999999999999999999764
No 61
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=100.00 E-value=1.5e-61 Score=550.63 Aligned_cols=378 Identities=24% Similarity=0.317 Sum_probs=318.2
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+.+|++++.+.. ..+.+++..+|+++|+++
T Consensus 18 ~~~~~~--~~G~~l~d~dG~----~ylD~~~g~~~~~lGh-~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~L~~~ 89 (397)
T TIGR03246 18 PFIPVR--GEGSRVWDQQGK----EYIDFAGGIAVNALGH-AHPELVKALIEQADKLWHIG-NGYTNEPVLRLAKKLVDA 89 (397)
T ss_pred CceEEE--eecCEEEeCCCC----EEEECCcCHhhccCCC-CCHHHHHHHHHHHHhccccc-CccCCHHHHHHHHHHHhh
Confidence 456666 888999999999 9999999999999999 89999999999999865543 246789999999999998
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
.+ .++++|+||||||||+|||+| |.|++.++. +|| .+||+++++|||+|.+++++++.+.++..
T Consensus 90 ~~---~~~~~f~~SGseA~e~Alk~a-r~~~~~~~~-~~r-----------~~ii~~~~~yHG~~~~~~~~~~~~~~~~~ 153 (397)
T TIGR03246 90 TF---ADKVFFCNSGAEANEAALKLA-RRYALDKHG-ADK-----------SEIVAFKNSFHGRTLFTVSVGGQPKYSQG 153 (397)
T ss_pred CC---CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC-CCC-----------CEEEEECCCcCCccHHHHHhcCCcccccC
Confidence 86 479999999999999999999 677655432 243 78999999999999999999876544421
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+.++ + +++.++++| | .+.+++.+.
T Consensus 154 --------~~~~--~------~~~~~~~~~--------------------------d--------~~~l~~~l~------ 177 (397)
T TIGR03246 154 --------FAPL--P------GGIKHAPYN--------------------------D--------LAAAKALIS------ 177 (397)
T ss_pred --------CCCC--C------CceEEeCCC--------------------------C--------HHHHHHHhc------
Confidence 1111 1 123333332 2 134555552
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
++++|||+||+ ++++|+++|+++||++|+++|++||++||+|||||||||+|++|+++++|+.||++|+||+|+||
T Consensus 178 --~~~aavi~Epi-~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~t~~K~lggG- 253 (397)
T TIGR03246 178 --DKTCAVIVEPI-QGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDILTSAKALGGG- 253 (397)
T ss_pred --cCeEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEEEeehhhhCC-
Confidence 36999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+... .+++||++||++|++++++|++++++++.++++++++++.+.| .++..+++
T Consensus 254 ~pigav~~~~~i~~~~~~~------~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L----~~l~~~~~ 323 (397)
T TIGR03246 254 FPIGAMLTTTEIAAHLKVG------THGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGL----EKINARYN 323 (397)
T ss_pred cceeEEEEcHHHHHhccCC------CcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH----HHHHhcCC
Confidence 8999999999999988642 4788999999999999999999988888888888888887755 44445688
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.+.++||.|+|+++++.++. ...+..++..|+++|+++.+.| +.+|+.||+++|+++||+++++|+++++++
T Consensus 324 ~~~~vrg~G~~~~i~~~~~~------~~~~~~~~~~l~~~Gv~~~~~g~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~~ 396 (397)
T TIGR03246 324 VFSEIRGKGLLIGAVLTEAY------QGKAKQFVNAAAEEGVIALIAGPNVVRFAPSLVISDDDIDEGLARFERAIEQV 396 (397)
T ss_pred CeEeeecCceEEEEEEcCch------hhHHHHHHHHHHHCCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 88999999999999997531 1246788999999999998876 899999999999999999999999988754
No 62
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=100.00 E-value=1.1e-62 Score=547.69 Aligned_cols=338 Identities=27% Similarity=0.400 Sum_probs=279.6
Q ss_pred EEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCC
Q 002941 379 IDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGK 458 (863)
Q Consensus 379 i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~ 458 (863)
|++ ++|+|+||.||+ +|+|+++++|++++|| +||+|++|+++|++++.+.++..+.+++..+|+++|.+.+|.
T Consensus 2 i~~--a~G~~l~d~dG~----~~lD~~~~~~~~~lGh-~~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p~ 74 (339)
T PF00202_consen 2 IER--AEGAYLWDVDGR----EYLDFMSGYGSVNLGH-NHPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFPG 74 (339)
T ss_dssp EEE--EEBTEEEETTSE----EEEESSHHHHTTTT-B-T-HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSST
T ss_pred eEE--eecCEEEECCCC----EEEECCCCccceecCC-CccccchhHHHHhhhcccccccceeccchhhhhhhhhhcccc
Confidence 555 788999999999 9999999999999999 899999999999999998876788999999999999999976
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcC
Q 002941 459 GWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538 (863)
Q Consensus 459 ~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~ 538 (863)
+ +++|+|++|||||||.|||+|+ +|+..++. ++| ++||+|+++|||+|.+++++++.+.++..+
T Consensus 75 ~-~~~v~f~~sGseAve~Alkla~-~~~~~~~~-~~r-----------~~il~~~~~yHG~t~~~~s~~~~~~~~~~~-- 138 (339)
T PF00202_consen 75 G-LDRVFFANSGSEAVEAALKLAR-QYHNKRAY-TGR-----------RKILAFEGSYHGRTLGALSLTGNPPYRKGF-- 138 (339)
T ss_dssp T-EEEEEEESSHHHHHHHHHHHHH-HHHHHTHH-HTT-----------TEEEEETTTB-TSSHHHHHHSSSTHHHTTT--
T ss_pred c-cceeeeccCchHHHHHHHHHhh-cccccccc-cCC-----------ceEEEeeeeeeccCcccccccCCccccccc--
Confidence 4 7999999999999999999994 56555544 354 899999999999999999998766554321
Q ss_pred CcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCC
Q 002941 539 PWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618 (863)
Q Consensus 539 ~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~ 618 (863)
.+.+ .++.++|+|+... ++....+...+++.+.+ .+++
T Consensus 139 ------~~~~--------~~~~~~p~~~~~~------------------------~~~~~~~~~~~~~~~~~----~~~~ 176 (339)
T PF00202_consen 139 ------GPLY--------PGVVFVPFPDPAA------------------------DEEEQACLNALEELIAA----LNAD 176 (339)
T ss_dssp ------CSSS--------TTEEEEETTCHHH------------------------HHHHHHHHHHHHHHHHH----HHGG
T ss_pred ------cccc--------cccccccCCccch------------------------hhhHHHHHHHHHHHHHh----hcCC
Confidence 1111 2345566665431 01111222333333322 2467
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCc
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPL 698 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pi 698 (863)
+|||||+||| ||++|++++|++||++|+++|+|||++||+|||+|||||||++|+++++|+.|||+|+||+|+|| +|+
T Consensus 177 ~iaavivEPi-~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~gK~l~gG-~p~ 254 (339)
T PF00202_consen 177 EIAAVIVEPI-QGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTFGKGLGGG-LPI 254 (339)
T ss_dssp GEEEEEEESS-BTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEEEGGGGTT-SSE
T ss_pred cEEEEEEecc-ccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCcccccccchhhh-hhc
Confidence 8999999997 99999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred eeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee
Q 002941 699 AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ 778 (863)
Q Consensus 699 gav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~ 778 (863)
|++++++++++.+... .|++||++||++|++++++|++++++++.+++++.++++.+.| .++.++++.|.
T Consensus 255 sav~~~~~i~~~~~~~------~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~L----~~l~~~~~~i~ 324 (339)
T PF00202_consen 255 SAVLGSEEIMEAFQPG------SHGSTFGGNPLSCAAALATLEILEEEDLLERVRELGERLREGL----RELAARYPLIG 324 (339)
T ss_dssp EEEEEEHHHHTTSCTT------SSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH----HHHHHHTTTEE
T ss_pred ccccccchhhcccccc------ccccccccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHHHHH----HHHHHhCCCeE
Confidence 9999999999988653 3899999999999999999999999888888888888887754 55666779999
Q ss_pred EecccceEEEEEEcc
Q 002941 779 RVVALGTLCAIELQA 793 (863)
Q Consensus 779 ~vrg~Gl~~~iel~~ 793 (863)
+|||.|+|++|++++
T Consensus 325 ~vrg~Gl~~~ie~~k 339 (339)
T PF00202_consen 325 EVRGIGLMIGIELVK 339 (339)
T ss_dssp EEEEETTEEEEEESS
T ss_pred EEeeeCeEEEEEEEC
Confidence 999999999999964
No 63
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=100.00 E-value=1.5e-60 Score=549.50 Aligned_cols=383 Identities=18% Similarity=0.230 Sum_probs=302.6
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|+++++ |+|+|+||+||| +|||+++|+|++++|| +||+|++|+++|++++.+. ...+++..+|||+|++.
T Consensus 82 p~~~~~--a~G~~l~D~dG~----~yiD~~~g~g~~~lGh-~~p~v~~av~~ql~~~~~~---~~~~~~~~~lAe~l~~~ 151 (474)
T PLN02482 82 PIVFDR--VKGSYAWDVDGN----EYIDYVGSWGPAIIGH-ADDEVLAALAETMKKGTSF---GAPCLLENVLAEMVIDA 151 (474)
T ss_pred CeeEEE--eeeCEEEECCCC----EEEEecccccccccCC-CCHHHHHHHHHHHhhCCCC---CCCCHHHHHHHHHHHHh
Confidence 566776 888999999999 9999999999999999 8999999999999997653 45789999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccc--eecCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM--EAQAPSPYT 533 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gal--s~t~~~~~~ 533 (863)
+|. +++|+|+||||||||.|||+| |.| ||| ++||.|+++|||++...+ +.++...+.
T Consensus 152 ~p~--~~~v~f~~SGsEA~e~AlklA-R~~-------tgr-----------~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~ 210 (474)
T PLN02482 152 VPS--VEMVRFVNSGTEACMGVLRLA-RAY-------TGR-----------EKIIKFEGCYHGHADSFLVKAGSGVATLG 210 (474)
T ss_pred CCC--CCEEEEeCChHHHHHHHHHHH-HHh-------cCC-----------CEEEEECCccCCCcchhhhhcCCCccccC
Confidence 984 689999999999999999999 677 565 789999999999885533 333211111
Q ss_pred CCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 002941 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (863)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~ 613 (863)
. ++.. .. |... ...+.. +| .+| .+.+++.|++
T Consensus 211 ~----~~~~----g~--~~~~-~~~~~~--~~------------------------~nd--------~~~l~~~l~~--- 242 (474)
T PLN02482 211 L----PDSP----GV--PKAA-TSATLT--AP------------------------YND--------LEAVKKLFEA--- 242 (474)
T ss_pred C----CCCC----CC--CCCC-CCCeEE--ec------------------------CCC--------hHHHHHHHHh---
Confidence 0 0000 00 0000 000011 11 122 2445666643
Q ss_pred CCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCC
Q 002941 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (863)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLgg 693 (863)
+++++||||+||| ||++|+++|+++||++|+++|++||++||+|||+||| |+|.+|+++++|+.||++||||+|||
T Consensus 243 --~~~~iAavI~Epv-~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~~gv~PDi~t~gK~lgg 318 (474)
T PLN02482 243 --NKGEIAAVILEPV-VGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGITPDLTTLGKVIGG 318 (474)
T ss_pred --CCCceEEEEECCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcchHhHHhCCCCCEEEecchhhC
Confidence 4678999999998 9999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +|+|++++++++++.+... ..+.|++||++||++|||++++|+++++++++++++++++++++.| .++..+
T Consensus 319 G-~Pigav~g~~ei~~~~~~~---~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~l~~~L----~~l~~~ 390 (474)
T PLN02482 319 G-LPVGAYGGRREIMEMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKKLIQGI----LEAGKK 390 (474)
T ss_pred C-CceEEEEEcHHHHHhhccC---CCcccccCcchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH----HHHHHh
Confidence 9 8999999999999998632 1356889999999999999999999988888999998888888765 445555
Q ss_pred C--CCe-eEecccceEEEEEEccCCcC-----CCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHH
Q 002941 774 H--RTV-QRVVALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 774 ~--p~v-~~vrg~Gl~~~iel~~~~~~-----~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~ 845 (863)
+ |.+ .+++| |++++|.++... ..........+.+.|+++||++.+.+...+ .||+.+|++|||+++++
T Consensus 391 ~g~~~~~~~v~g---~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~~~~-~psl~ht~~dId~~l~a 466 (474)
T PLN02482 391 AGHEMCGGYISG---MFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQFEAG-FTSLAHTEEDIDFTIAA 466 (474)
T ss_pred cCCCEEEcccce---EEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCCCCC-cCCCCCCHHHHHHHHHH
Confidence 4 443 34544 889999764211 011223456789999999999988653223 38999999999999999
Q ss_pred HHHHHHHH
Q 002941 846 LYQRLEEF 853 (863)
Q Consensus 846 L~~~l~~l 853 (863)
++++++++
T Consensus 467 l~~~l~~~ 474 (474)
T PLN02482 467 AERVLARI 474 (474)
T ss_pred HHHHHHhC
Confidence 99998753
No 64
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=100.00 E-value=8.8e-61 Score=548.73 Aligned_cols=395 Identities=16% Similarity=0.162 Sum_probs=305.9
Q ss_pred cccceEEEEc-CCCcccceEEeeecccccccCCCCCcHHHH--HHHHHHHHhcccc--cCCCCCChHHHHHHHHHHhhcC
Q 002941 383 CGENFSVYQD-QKNKFIGQQFDACASWWTQGPDATLQIELA--RDMGYTAARFGHV--MFPENVYEPALECAELLLQGVG 457 (863)
Q Consensus 383 ~G~G~~v~D~-dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~--~Ai~~q~~~~~~~--~~~~~~~~~~~eLae~L~~~~p 457 (863)
+|+|+|+||. ||+ +|||+++|+|++++|| +||+|+ +|+.+|++++.+. ....+.+++..+++++|+++++
T Consensus 25 ~a~G~~l~D~~dG~----~ylD~~~g~~~~~lGh-~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 99 (431)
T TIGR03251 25 RSRGSVLVDARDGR----RYLDMFSFFASMALGM-NHPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTFARVLG 99 (431)
T ss_pred eccCCEEEECCCCC----ChhhcccChhhcCCCC-CChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHhcC
Confidence 4899999996 999 9999999999999999 899999 9999999987532 2234678999999999999873
Q ss_pred CCCCCeEEEeCChhhHHHHHHHHHHHHHHhh----ccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCC
Q 002941 458 KGWASRAYFSDNGSTAIEIALKMAFRKFSFD----HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (863)
Q Consensus 458 ~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~----~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~ 533 (863)
.+.+++|+|+||||||||+|||+| |+|+.+ +|++ + ..|++||+|+++|||+|.+++++++...++
T Consensus 100 ~~~~~~v~f~~sGsEAve~AlklA-r~~t~~~~~~~g~~-~---------~~~~~ii~~~~~yHG~t~~als~~~~~~~~ 168 (431)
T TIGR03251 100 DPALPHLFFIEGGALAVENALKTA-FDWKSRHNQARGIP-A---------ALGTQVLHLRQAFHGRSGYTLSLTNTDPRK 168 (431)
T ss_pred CCCcCEEEEeCCcHHHHHHHHHHH-HHHhhcchhhcCCC-C---------CCCceEEEECCccCCcchhhhhccCCcccc
Confidence 233789999999999999999999 677532 2321 0 013789999999999999999998854333
Q ss_pred CCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 002941 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (863)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~ 613 (863)
.. +.+..+. .+++.|... +++..+. ..+...+...+.+.+++.++.
T Consensus 169 ~~--------~~~~~~~---------~~~~~p~~~-----------~~~~~~~---~~~~~~~~~~~l~~~~~~~~~--- 214 (431)
T TIGR03251 169 TA--------RFPKFDW---------PRIDNPKLT-----------FPLDAPN---LDQVIALEEEALRQARAAFAE--- 214 (431)
T ss_pred cc--------CCCCCCC---------ccCCCCccc-----------CCccccc---cchhhHHHHHHHHHHHHHHHh---
Confidence 21 1111000 012222110 0000000 000112223345566666653
Q ss_pred CCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCC
Q 002941 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (863)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLgg 693 (863)
+++++||||+||| ||++|+++||++||++|+++|++||++||+|||||||||+|++|+++++|+.||++|+||++
T Consensus 215 --~~~~iAavivEPv-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~~gK~~-- 289 (431)
T TIGR03251 215 --RPHDIACFIAEPI-QGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFGKKT-- 289 (431)
T ss_pred --CCCcEEEEEEecc-ccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEEecccC--
Confidence 4679999999998 99999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
|+++++..+++.+.....-. ....+++||++||++|++++|+|++++++++.++++++++++.+.| .++.++
T Consensus 290 ---~~~g~~~~~~i~~~~~~~~~-~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L----~~l~~~ 361 (431)
T TIGR03251 290 ---QVCGIMAGRRVDEVADNVFA-VPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARL----HELAAE 361 (431)
T ss_pred ---ccceEEecchHHHhhhhccc-CccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHHh
Confidence 56667777665443221000 0124789999999999999999999988888888988888888755 445567
Q ss_pred CC-CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 774 HR-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 774 ~p-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
++ .+.++||.|+|+++++.+.. ....+.+.|+++||++.+.+ +.+||+||+.+|++|||+++++|++
T Consensus 362 ~~~~i~~vrg~G~~~~i~~~~~~--------~~~~~~~~l~~~Gvl~~~~g~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 362 FPHLVSNPRGRGLMCAFDLPSTA--------DRDEVIRQLYREGVLLLGCGERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred CccceecccccceeEEEEeCCHH--------HHHHHHHHHHhCCeEEecCCCCeEEEECCccCCHHHHHHHHHHHHh
Confidence 88 89999999999999996432 45678999999999999876 8999999999999999999999876
No 65
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=100.00 E-value=5.4e-60 Score=540.44 Aligned_cols=385 Identities=22% Similarity=0.272 Sum_probs=306.5
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++... .+.+++..+|+++|++.
T Consensus 36 p~~i~~--a~G~~l~D~dG~----~yiD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~---~~~~~~~~~la~~L~~~ 105 (433)
T PRK00615 36 PPIVSS--ASGDIFIDSLGK----TFIDFCGSWGSLIHGH-SHPKICDAIQQGAERGTSY---GLTSEQEILFAEELFSY 105 (433)
T ss_pred CceEEE--eeeCEEEECCCC----EEEEcccchhccccCC-CCHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHHHh
Confidence 556666 888999999999 9999999999999999 8999999999999987532 46789999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCc---cccceecCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT---LGAMEAQAPSPY 532 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t---~gals~t~~~~~ 532 (863)
+|.+ .++|+|+||||||||+|||+| |.| ||| ++||+|+++|||+| ++++++++....
T Consensus 106 ~~~~-~~~v~f~~SGsEA~e~AiklA-r~~-------tgr-----------~~ii~~~~~yHG~td~~~~~~~~~~~~~~ 165 (433)
T PRK00615 106 LGLE-DHKIRFVSSGTEATMTAVRLA-RGI-------TGR-----------SIIIKFLGCYHGHADTLLQGISFSETSLD 165 (433)
T ss_pred CCCC-cCEEEEeCchHHHHHHHHHHH-HHh-------hCC-----------CEEEEEcCccCCCCcccCcccccCCCCcC
Confidence 8754 479999999999999999999 667 465 78999999999998 677777653211
Q ss_pred CCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 002941 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (863)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i 612 (863)
. +....+ ..++. ... ..+| .+| .+.+++.|++
T Consensus 166 ~------~~~~~~--~~~~~----~~~--~~~~------------------------~~d--------~~~l~~~l~~-- 197 (433)
T PRK00615 166 T------LTHLVD--TDLAH----PLT--LSLP------------------------YND--------FQIFQTVMNS-- 197 (433)
T ss_pred c------CCCCCC--CCCCC----CCe--EeCC------------------------CCC--------HHHHHHHHHh--
Confidence 1 000000 00000 000 0111 022 2445666643
Q ss_pred CCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccC
Q 002941 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (863)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLg 692 (863)
.++++|+||+||| |+++|+++|+++||++|+++|++||++||+||||||| |+|.+|+++++|+.|||+||||+||
T Consensus 198 ---~~~~~aavI~Epv-~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~gv~PDi~~~gK~lg 272 (433)
T PRK00615 198 ---LGHRVAGVIFEPI-CANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVKPDITVYGKILG 272 (433)
T ss_pred ---cCCceEEEEECCC-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHhHHHHhcCCCCCeEEEccccc
Confidence 2468999999998 9999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 693 gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
|| +|+|++++++++++.+... ..+++++||++||++|||++++|++++++++++++.++++++.+.|+ +.+.
T Consensus 273 gG-~p~~av~~~~~i~~~~~~~---~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l~~~l~----~~~~ 344 (433)
T PRK00615 273 GG-LPAAAVVAHKSIMDHLAPE---GTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQNFLSPIE----EMIR 344 (433)
T ss_pred CC-cceeeeeecHHHHhhhcCC---CCcccCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHH
Confidence 99 7999999999999998642 12468899999999999999999999888888999888888877654 4444
Q ss_pred c--CCCeeEecccceEEEEEEccCCcC--CCC---chHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHH
Q 002941 773 S--HRTVQRVVALGTLCAIELQAAGCN--AGY---GSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 773 ~--~p~v~~vrg~Gl~~~iel~~~~~~--~~~---~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~ 845 (863)
+ ++ +..+| .|+|++++|.++... .+. .......+...|+++||++.+...... ..+..+|++|||+++++
T Consensus 345 ~~g~~-v~~~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~-~ls~~ht~~did~~~~a 421 (433)
T PRK00615 345 SQGFP-VSLVR-YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFEAS-FLSSAHSMENLDYAQNV 421 (433)
T ss_pred HcCCC-eEEEe-eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCcccccc-ceecCCCHHHHHHHHHH
Confidence 4 45 77888 999999999864311 000 223456899999999999987531111 23678999999999999
Q ss_pred HHHHHHHHH
Q 002941 846 LYQRLEEFD 854 (863)
Q Consensus 846 L~~~l~~l~ 854 (863)
++++++++-
T Consensus 422 ~~~~~~~~~ 430 (433)
T PRK00615 422 LIDSLEKVF 430 (433)
T ss_pred HHHHHHHHh
Confidence 999998753
No 66
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=100.00 E-value=6.4e-60 Score=538.69 Aligned_cols=379 Identities=24% Similarity=0.289 Sum_probs=317.1
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
+.++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+.+|++++.+.. ..+.++++.+|+++|+++
T Consensus 22 ~~~~~~--~~G~~~~d~dG~----~~lD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~ 93 (406)
T PRK12381 22 PFIPVR--GEGSRLWDQQGK----EYIDFAGGIAVNALGH-AHPALREALNEQASKFWHTG-NGYTNEPVLRLAKKLIDA 93 (406)
T ss_pred CceEEE--eecCEEEeCCCC----EEEEcCcCHhhccCCC-CCHHHHHHHHHHHhhccccc-CccCCHHHHHHHHHHHhh
Confidence 456666 788999999999 9999999999999999 79999999999999876654 346789999999999998
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
.+ .++|+|++||+||||+|+|+| |.|+..++. ++ +++||+++++|||+|.+++++++.+.++..
T Consensus 94 ~~---~~~v~~~~sGseA~e~Alk~a-r~~~~~~~~-~~-----------r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~ 157 (406)
T PRK12381 94 TF---ADRVFFCNSGAEANEAALKLA-RKYAHDRYG-SH-----------KSGIVAFKNAFHGRTLFTVSAGGQPKYSQD 157 (406)
T ss_pred CC---CCeEEEcCCcHHHHHHHHHHH-HHHHhhcCC-CC-----------CCeEEEECCCcCCcchhHHhhcCCcccccC
Confidence 76 479999999999999999999 677654443 23 378999999999999999999886554421
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
++++ + +++.++++| | .+.+++.+.
T Consensus 158 --------~~~~--~------~~~~~~~~~--------------------------d--------~~~l~~~l~------ 181 (406)
T PRK12381 158 --------FAPL--P------PDIRHAAYN--------------------------D--------LNSASALID------ 181 (406)
T ss_pred --------CCCC--C------CCeeEeCCC--------------------------C--------HHHHHHhcc------
Confidence 1111 1 112222222 2 133454442
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
++++|||+||+ +++||+++|+++|+++|+++|++||++||+|||||||||+|++|+++++++.||++||||+|+||
T Consensus 182 --~~~aaviiEPv-~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi~t~sK~l~gG- 257 (406)
T PRK12381 182 --DQTCAVIVEPI-QGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTTAKALGGG- 257 (406)
T ss_pred --CCeeEEEEeCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCEEEehhhhhCC-
Confidence 47999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+.. ..+++||++||++|++++++|++++++++.++++++++++.+.| .++..+++
T Consensus 258 ~~ig~~~~~~~~~~~~~~------~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L----~~l~~~~~ 327 (406)
T PRK12381 258 FPIGAMLTTEKCASVMTV------GTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERL----NTINARYG 327 (406)
T ss_pred CceEEEEEcHHHHhhcCC------CCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH----HHHHhhCC
Confidence 899999999999998864 24788999999999999999999988778888888887777755 44445678
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.+.++||.|+|+++++.++. ...+..+...|+++||++.+.+ +.+||.||+++|+++|++++++|+++++++.
T Consensus 328 ~~~~vrg~Gl~~~~~l~~~~------~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~ 401 (406)
T PRK12381 328 LFSEIRGLGLLIGCVLNAEY------AGKAKQISQEAAKAGVMVLIAGPNVVRFAPALNISEEEITTGLDRFARACERFV 401 (406)
T ss_pred CEEEEecCeEEEEEEecCch------hhHHHHHHHHHHHCCcEEeeCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999997531 0135678899999999998766 7999999999999999999999999998764
No 67
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=100.00 E-value=1.5e-59 Score=516.86 Aligned_cols=411 Identities=21% Similarity=0.272 Sum_probs=324.7
Q ss_pred hcChhhhhccccc----ccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHH
Q 002941 350 LCDMPKRAGELFW----WPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDM 425 (863)
Q Consensus 350 ~~~~~~~~~~~l~----~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai 425 (863)
+..+.+++.+.+. .|.......+ ..|.++.+ |+|+|+||+||| +|+|++.+|+...+|| +||.|++|+
T Consensus 7 S~~l~~~A~~~~pGGvnspvra~~~v~-~~P~fi~~--g~Ga~l~DvDGn----~YIDy~~~~Gp~ilGH-~~p~V~~Av 78 (432)
T COG0001 7 SEALFERAKKVIPGGVNSPVRAFKSVG-GYPIFIER--GKGAYLTDVDGN----EYIDYVLGWGPLILGH-AHPAVVEAV 78 (432)
T ss_pred hHHHHHHHhhhCCCCCCccccccCCCC-CCCeeEEe--ccCCeEEeCCCC----EeeehhccCcccccCC-CCHHHHHHH
Confidence 3445555555442 3322222222 35677776 889999999999 9999999999999999 899999999
Q ss_pred HHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCcccccc
Q 002941 426 GYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCI 505 (863)
Q Consensus 426 ~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~ 505 (863)
++|+++.... +.+++..++|||.|++.+|. .++|.|+|||+||+..|||+| |.| |||
T Consensus 79 ~~~l~~G~~f---g~Pte~Ei~~Aell~~~~p~--~e~vrfvnSGTEAtmsAiRlA-Ra~-------TgR---------- 135 (432)
T COG0001 79 QEQLERGLSF---GAPTELEVELAELLIERVPS--IEKVRFVNSGTEATMSAIRLA-RAY-------TGR---------- 135 (432)
T ss_pred HHHHHhcCCC---CCCCHHHHHHHHHHHHhcCc--ccEEEEecchhHHHHHHHHHH-HHh-------hCC----------
Confidence 9999997553 45799999999999999995 589999999999999999999 778 676
Q ss_pred ccEEEEecCCCccCccccceecC--CCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccc
Q 002941 506 ELKVLALKGSYHGDTLGAMEAQA--PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSR 583 (863)
Q Consensus 506 r~~II~~~~sYHG~t~gals~t~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~ 583 (863)
.|||.|+|+|||+....+--.+ ...+.. | +.|.+......+.+.+|
T Consensus 136 -~kIikF~G~YHG~~D~~lv~agsg~~t~g~----p---------~s~Gvp~~~a~~ti~~~------------------ 183 (432)
T COG0001 136 -DKIIKFEGCYHGHSDSLLVKAGSGAATLGS----P---------SSPGVPADVAKHTLVLP------------------ 183 (432)
T ss_pred -CeEEEEcCCCCCCccHHHhhcCcCcccCCC----C---------CCCCCChhhhccEEEec------------------
Confidence 8999999999999987765432 111100 0 11111000000111111
Q ss_pred cchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccc
Q 002941 584 DEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF 663 (863)
Q Consensus 584 ~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~ 663 (863)
+|| .+.+++.+++ .+++|||||+||| +|..|+++|.++|++.||++|++||++||+|||+
T Consensus 184 ------yND--------~~al~~~~~~-----~g~~IAaVIvEPv-~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEVi 243 (432)
T COG0001 184 ------YND--------LEALEEAFEE-----YGDDIAAVIVEPV-AGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVI 243 (432)
T ss_pred ------CCC--------HHHHHHHHHH-----cCCcEEEEEeccc-cCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecch
Confidence 245 3567777764 5789999999998 9999999999999999999999999999999999
Q ss_pred ccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHh
Q 002941 664 TGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWF 743 (863)
Q Consensus 664 TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l 743 (863)
||| |.+..+++++|||+||+.||||.+||| +|+|++.+++++|+.+.... ..++.+||+|||++++|++++|+.+
T Consensus 244 TGF-R~~~gGaq~~~gi~PDlttlGKiIGGG-lP~ga~gGr~eiM~~~~p~g---~vyqaGT~sgnplamaAG~atl~~l 318 (432)
T COG0001 244 TGF-RVALGGAQGYYGVEPDLTTLGKIIGGG-LPIGAFGGRAEIMEQLAPLG---PVYQAGTLSGNPLAMAAGLATLEEL 318 (432)
T ss_pred hhc-ccCCcccccccCcCcchhhhhhhhcCC-cceeeeccHHHHHhhhCCCC---CccccCCCCCcHHHHHHHHHHHHHH
Confidence 999 999999999999999999999999999 89999999999999887643 4678999999999999999999999
Q ss_pred cC-hhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCc------hHHHHHHHHHHHHCC
Q 002941 744 KD-PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYG------SLYAASLLKKLREDG 816 (863)
Q Consensus 744 ~~-~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~------~~~~~~l~~~l~e~G 816 (863)
++ ++.++++.+.+++|.+.+ .+.+.++..-..+.+.|.|+.+.|.+.+ ...+. ......+...|+++|
T Consensus 319 ~~~~~~y~~l~~~~~~L~~gl----~~~~~~~g~~~~v~~~gsm~~i~F~~~~-~~n~~da~~sd~~~~~~~~~~~l~~G 393 (432)
T COG0001 319 MTEEGVYERLDALGERLAEGL----RAAAERHGIPLTVNRVGSMFGIFFTEEG-VRNYADAKRSDVERFAKFFHHLLNRG 393 (432)
T ss_pred HhcccHHHHHHHHHHHHHHHH----HHHHHHhCCCeEEeeecceEEEEecCCC-CCCHHHHHhhchHHHHHHHHHHHhCC
Confidence 76 457899999888888855 5556677666688999999999998753 11221 112345666999999
Q ss_pred cEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 817 VYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 817 V~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
|++.|....-.|. +..||+++||+.+++++++++++.
T Consensus 394 V~l~ps~~ea~fl-S~ahte~di~~~~~a~~~~~~~~~ 430 (432)
T COG0001 394 VYLAPSQFEAGFL-STAHTEEDIDRTLEAADEAFKELA 430 (432)
T ss_pred cccCCccccceee-ecccCHHHHHHHHHHHHHHHHHhh
Confidence 9999986333343 668999999999999998887764
No 68
>PLN02624 ornithine-delta-aminotransferase
Probab=100.00 E-value=1.1e-58 Score=536.99 Aligned_cols=384 Identities=21% Similarity=0.296 Sum_probs=317.5
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|+++++ |+|+|+||.||+ +|||+++|+|+.++|| +||+|++|+++|++++.+.+. .+.+++..+|+++|+++
T Consensus 58 p~~~~~--a~G~~l~d~dG~----~ylD~~sg~~~~~~Gh-~~p~v~~ai~~ql~~~~~~~~-~~~~~~~~~la~~L~~~ 129 (474)
T PLN02624 58 PVVFSR--AKGSRIWDPEGK----KYLDFLSAYSAVNQGH-CHPKIIKALTEQAEKLTLSSR-AFYNDKFPEFAEYLTSM 129 (474)
T ss_pred CceEEe--eeeCEEEECCCC----EEEEcccchhcccCCC-CCHHHHHHHHHHHHhcCCccc-ccCCHHHHHHHHHHHhh
Confidence 456766 788999999999 9999999999999999 899999999999999887653 46799999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHh-hccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSF-DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~-~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
+| .++++|+|||+||||+|||+| |.|+. .+|.+++ +.+||.+.++|||+|.+++++++.+.++.
T Consensus 130 ~~---~~~~~f~~SGseA~e~AlklA-r~~~~~~~g~~~~-----------~~~ii~~~~~yHG~t~~~~s~~~~~~~~~ 194 (474)
T PLN02624 130 FG---YDMVLPMNTGAEGVETAIKLA-RKWGYEKKGIPKN-----------EAIIVSCCGCFHGRTLAAISMSCDNEATR 194 (474)
T ss_pred cC---CCeEEEeCChHHHHHHHHHHH-HHHHHhhcCCCCC-----------CcEEEEECCCcCCCCHHHhhcCCCccccc
Confidence 86 579999999999999999999 56642 2232222 36899999999999999999987554432
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
.+++.. +++.++++ +| .+.+++.++.
T Consensus 195 --------~~~~~~--------~~~~~~~~--------------------------~d--------~~~l~~~l~~---- 220 (474)
T PLN02624 195 --------GFGPLL--------PGHLKVDF--------------------------GD--------LDALEKIFEE---- 220 (474)
T ss_pred --------cCCCCC--------CCceEeCC--------------------------CC--------HHHHHHHHHh----
Confidence 111111 11222221 12 1345666642
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
++++++|||+||+ ||++|+++|+++||++|+++|++||++||+||||+||||+|++|+++++++.||++||||+++||
T Consensus 221 -~~~~iaaiiiEpv-~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~lsK~lggG 298 (474)
T PLN02624 221 -DGDRIAAFLFEPI-QGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVILGKALGGG 298 (474)
T ss_pred -CCCCEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEEEecccccCC
Confidence 3568999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
++|+|++++++++++.+.. ..+++||++||++|+++.++|++++++++.+++.++++++++.+ .++..++
T Consensus 299 ~~pigav~~~~~i~~~~~~------~~~~~T~~g~pl~~aaa~aaLe~l~~~~l~~~~~~~~~~l~~~L----~~l~~~~ 368 (474)
T PLN02624 299 VIPVSAVLADKDVMLCIKP------GEHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQL----QKIQKQF 368 (474)
T ss_pred CCcceeeeecHHHHhHhcc------CCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 9999999999999988753 24789999999999999999999987777777777777777644 4455667
Q ss_pred C-CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 775 R-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 775 p-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
+ .+.+++|.|+|++|++..+. .....+.++++.|+++||++.|.+ +.+||.||+.+|+++|++++++|++++..
T Consensus 369 ~~~i~~vrg~G~~~~i~l~~~~----~~~~~a~~~~~~L~e~GV~v~p~~~~~lR~~p~l~~t~e~id~~l~~L~~~l~~ 444 (474)
T PLN02624 369 PKLIKEVRGRGLLNAVVLNSPK----LGPVSAYDVCLKLKERGLLAKPTHDTIIRLAPPLSISEDELQECSKALSDVLEH 444 (474)
T ss_pred CCceEEEEeeEEEEEEEecCCC----cChHHHHHHHHHHHhCCeEEecCCCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 7 47889999999999996431 011246688999999999999865 78999999999999999999999998875
No 69
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=100.00 E-value=5.1e-58 Score=471.14 Aligned_cols=407 Identities=19% Similarity=0.276 Sum_probs=328.3
Q ss_pred CCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHH
Q 002941 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (863)
Q Consensus 374 ~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (863)
+.|+-|++ ++|-|+||.+|+ +|||+++. +.-.|| +||+|++|+..|+...... ..+.|+...+.|+.|.
T Consensus 28 sDP~kivR--aq~QYmfDE~g~----~yLDCInN--VaHvgh-chp~VV~A~~kQmat~~tN--~RFlhd~lv~cA~~l~ 96 (452)
T KOG1403|consen 28 SDPLKIVR--AQGQYMFDEEGT----RYLDCINN--VAHVGH-CHPEVVRAGAKQMATISTN--NRFLHDELVQCARTLT 96 (452)
T ss_pred CCchhheh--hccceeeccCcc----cHHHHhhh--hhhccc-CCHHHHHHHHHHHhHhccc--chhhHHHHHHHHHHHh
Confidence 35667776 677899999999 99999972 233577 9999999999999987543 4678999999999999
Q ss_pred hhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCC
Q 002941 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (863)
Q Consensus 454 ~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~ 533 (863)
..+|+ ++-+||+|||||||+.|||+| |.| +++ +++|+++.+|||.....|.++- |+
T Consensus 97 stlPe--Lsvc~F~NSGSEANDLALRLA-R~f-------tkh-----------qDvItldHAYHGHl~s~mE~SP---YK 152 (452)
T KOG1403|consen 97 STLPE--LSVCFFVNSGSEANDLALRLA-RNF-------TKH-----------QDVITLDHAYHGHLQSVMEVSP---YK 152 (452)
T ss_pred hcCCC--ceEEEEecCCchhhHHHHHHH-Hhh-------ccc-----------CceEEEechhccceeeeeeccc---ee
Confidence 99986 889999999999999999999 667 454 7899999999999877777752 22
Q ss_pred CCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 002941 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (863)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~ 613 (863)
. ..+.-..-| .-++..|.|+-|+.+.- +.- ..+ .+....|.+.+++.+++.+
T Consensus 153 F--------~~g~~v~kp-----d~VHVAPcPDvyrGK~r---~~~----------~~~-a~~~~~Yad~vk~I~~d~~- 204 (452)
T KOG1403|consen 153 F--------NQGGGVAKP-----DYVHVAPCPDVYRGKFR---DKM----------YPD-ADMGALYADPVKEICQDQL- 204 (452)
T ss_pred c--------cCCCCcCCC-----ceeEecCCccccccccc---ccc----------CCc-ccchhhhhhHHHHHHHHHH-
Confidence 1 111111112 23556788887753210 000 011 1111234555555555421
Q ss_pred CCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhcCCCCcEEEeccccC
Q 002941 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYGKLLT 692 (863)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PDivt~sKgLg 692 (863)
.....|||+|.|.. |+-||-++||.+|++.+.+..+.+|-+.|+||||+||||.|+ +|+++.|++.|||+|+||.||
T Consensus 205 -~~g~gvAAfiAEsl-QSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmG 282 (452)
T KOG1403|consen 205 -AKGQGVAAFIAESL-QSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMG 282 (452)
T ss_pred -hcCCcHHHHHHHHH-HhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchheecccCC
Confidence 23567999999997 999999999999999999999999999999999999999997 899999999999999999999
Q ss_pred CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 693 gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
+| .|+++|+++++|+++|...+ +....||+|||++||+++|+|+++++++++++..+.+.+|.. .|.++..
T Consensus 283 NG-hPVa~VattkeIA~Af~atg----v~YFNTyGGnPVsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~----lL~~~k~ 353 (452)
T KOG1403|consen 283 NG-HPVAAVATTKEIAQAFHATG----VEYFNTYGGNPVSCAVGLAVMRVCEDENLQEHAQQVGEKLEV----LLRRLKQ 353 (452)
T ss_pred CC-CeeeEEeccHHHHHHhcccc----ceehhccCCCchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHH----HHHHHhh
Confidence 99 89999999999999997632 457799999999999999999999988777777776666665 4456678
Q ss_pred cCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec---CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 773 SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 773 ~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
+|++|++|||.|+|++|+++++..++.++...+..+..+|++. ||++... .|.+.|.||++.+++++++++..|++
T Consensus 354 kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDGPh~NilKiKPPmCFneena~e~v~~ld~ 433 (452)
T KOG1403|consen 354 KHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADGPHRNILKIKPPMCFNEENADEFVLGLDE 433 (452)
T ss_pred hccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCCCCCceeecCCCcccChhhHHHHHHHHHH
Confidence 9999999999999999999988766667777788888888865 7998754 49999999999999999999999999
Q ss_pred HHHHHH
Q 002941 849 RLEEFD 854 (863)
Q Consensus 849 ~l~~l~ 854 (863)
+|.-+.
T Consensus 434 iLT~me 439 (452)
T KOG1403|consen 434 ILTVME 439 (452)
T ss_pred HHHHHH
Confidence 998665
No 70
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=100.00 E-value=1.8e-56 Score=508.75 Aligned_cols=371 Identities=19% Similarity=0.283 Sum_probs=306.4
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+++|+|+.++|| +||+|++|+.+|++++.+.+. .+.+++..+|+++|+++
T Consensus 23 p~~~~~--~~G~~l~d~~G~----~~lD~~~g~~~~~lGh-~~p~v~~ai~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~ 94 (396)
T PRK04073 23 PIVISE--AEGVWVKDPEGN----RYMDMLSAYSAVNQGH-RHPKIIQALKDQADKVTLTSR-AFHSDQLGPWYEKVAKL 94 (396)
T ss_pred CceEEe--eeecEEEECCCC----EEEEcCCCHHhccCCC-CCHHHHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHhc
Confidence 456666 889999999999 9999999999999999 899999999999999887643 45789999999999998
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHh-hccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSF-DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~-~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
.| .++++|+||||||||+|||+| |.|++ .+|..+| |.+||+++++|||+|.+++++++.+.++.
T Consensus 95 ~~---~~~~~~~~SGseA~e~Alk~a-~~~~~~~~g~~~~-----------r~~ii~~~~~~HG~~~~~~~~~~~~~~~~ 159 (396)
T PRK04073 95 TG---KDMVLPMNTGAEAVETAIKAA-RRWAYDVKGVEPN-----------KAEIIACEGNFHGRTMAAVSLSSEEEYKR 159 (396)
T ss_pred CC---CCeEEEcCChHHHHHHHHHHH-HHHhhhccCCCCC-----------CCEEEEECCCcCCCCHHHHhhcCCccccc
Confidence 76 479999999999999999999 55642 2343234 37899999999999999999987554432
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
. +.+. . +++.+++++ | .+.+++.+.
T Consensus 160 ~--------~~~~--~------~~~~~~~~~--------------------------d--------~~~l~~~i~----- 184 (396)
T PRK04073 160 G--------FGPM--L------PGIKKIPYG--------------------------D--------LEALKAAIT----- 184 (396)
T ss_pred C--------CCCC--C------CCceEeCCC--------------------------C--------HHHHHHhcc-----
Confidence 1 1111 0 122223222 1 133444442
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
+++++||+||+ ++++|.++++++|+++|+++|++||++||+||||+||||+|++++++++++.||++||||++|+|
T Consensus 185 ---~~~~~viiep~-~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~~sK~lg~g 260 (396)
T PRK04073 185 ---PNTAAFLVEPI-QGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYILGKALGGG 260 (396)
T ss_pred ---cCeEEEEEcCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCCEEEecccccCC
Confidence 35899999998 99999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
++|+|++++++++++.+... .+.+||++||++|++++++|++++++++.+++.++++++.+.| .++ .+
T Consensus 261 g~~ig~~~~~~~i~~~~~~~------~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~~~~~l~~~L----~~l--~~ 328 (396)
T PRK04073 261 VFPISCVAANRDILGVFTPG------SHGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFKEQL----KEI--DN 328 (396)
T ss_pred CCcceEEEEcHHHHhhhcCC------CCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----Hhh--cC
Confidence 89999999999999988642 4778999999999999999999977777777777666666544 332 34
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
+.+.+++|.|+|+++++... +..+.+.|+++||++.+.+ +.+||+||+++|+|++|+++++|++++
T Consensus 329 ~~i~~~~~~g~~~~~~~~~~----------~~~~~~~l~~~Gv~~~~~~~~~iRi~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 329 PMIKEVRGRGLFIGVELNEP----------ARPYCEALKEEGLLCKETHETVIRFAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred CcccceecceEEEEEEecch----------HHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence 66788999999999998632 4678889999999998865 799999999999999999999998875
No 71
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=100.00 E-value=1.1e-55 Score=501.00 Aligned_cols=373 Identities=22% Similarity=0.323 Sum_probs=312.6
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|++|++ |+|+++||.||+ +|+|+.+|+|++++|| +||+|++|+++|++++.+... .+.++...+|+++|+++
T Consensus 14 ~~~~~~--~~G~~~~d~dG~----~~lD~~~g~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~ 85 (389)
T PRK01278 14 DLAFER--GEGVWLIDEDGE----RYLDFASGIAVNSLGH-AHPHLVEALKEQAEKLWHVSN-LYRIPEQERLAERLVEN 85 (389)
T ss_pred CceEEe--eecCEEEECCCC----EEEECCccHhhccCCC-CCHHHHHHHHHHHHhcCcccc-ccCChHHHHHHHHHHhh
Confidence 567776 788999999999 9999999999999999 899999999999998766542 35789999999999998
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
.+ .++|+|++||+|||++|+|+| |.|+...|. ++ |++||+++++|||++.+++++++.+.++..
T Consensus 86 ~~---~~~v~~~~sGseA~~~al~~a-r~~~~~~G~-~~-----------r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 149 (389)
T PRK01278 86 SF---ADKVFFTNSGAEAVECAIKTA-RRYHYGKGH-PE-----------RYRIITFEGAFHGRTLATIAAGGQEKYLEG 149 (389)
T ss_pred CC---CCEEEEcCCcHHHHHHHHHHH-HHHHHhcCC-CC-----------CCEEEEECCCcCCCcHHHHhccCChhhccc
Confidence 76 479999999999999999999 567655554 23 378999999999999999999876544321
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+ .+. . +++.++++| | .+.+++.+.
T Consensus 150 ~--------~~~----~----~~~~~~~~~--------------------------d--------~~~l~~~l~------ 173 (389)
T PRK01278 150 F--------GPL----V----PGFDQVPFG--------------------------D--------IEALKAAIT------ 173 (389)
T ss_pred C--------CCC----C----CCceEeCCC--------------------------C--------HHHHHHhhC------
Confidence 1 000 0 111222222 1 134555552
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++++||+||+ ++++|+.+++++|+++|+++|++||++||+|||||||||+|++++++++++.||++||||++++|
T Consensus 174 --~~~~avivep~-~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G- 249 (389)
T PRK01278 174 --PNTAAILIEPI-QGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMAVAKGIGGG- 249 (389)
T ss_pred --CCeEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCEEEEehhccCC-
Confidence 37999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+.. ..+++||++||+++++++++|++++++++.++++++++++++.+ .++.+.++
T Consensus 250 ~~ig~~~~~~~~~~~~~~------~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l----~~l~~~~~ 319 (389)
T PRK01278 250 FPLGACLATEEAAKGMTP------GTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKL----EGLVDRFP 319 (389)
T ss_pred cceEEEEEcHHHHhccCC------CCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHHhhCC
Confidence 899999999999988754 24789999999999999999999987777888888888877755 33445677
Q ss_pred -CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 776 -TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 776 -~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.+.+++|.|+++++++..+ +..+++.|+++||++.|.+ +.+||.||+++++++|++++++|++++++
T Consensus 320 ~~~~~v~g~G~~~~i~~~~~----------~~~~~~~l~~~GV~~~p~~~~~lR~~p~~~~~~~~i~~~l~~l~~~l~~ 388 (389)
T PRK01278 320 DVIEEVRGKGLLLGLKCVVP----------NRDLVQALRDEGLLTVGAGDNVVRLLPPLIITEEEIDEALERLERAAES 388 (389)
T ss_pred CceeeEecccEEEEEEEecC----------HHHHHHHHHHCCeEEeecCCCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 7889999999999998532 4678999999999999876 89999999999999999999999998865
No 72
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=100.00 E-value=1.1e-54 Score=498.33 Aligned_cols=398 Identities=25% Similarity=0.340 Sum_probs=323.0
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ ++|+++||.||+ +|||+.+|+|++++|| +||+|++|+.+|++++.+..+..+.+++..+|+++|++.
T Consensus 24 p~~~~~--~~G~~l~d~dG~----~~lD~~~g~~~~~lGh-~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~ 96 (425)
T PRK08088 24 PIFADR--AENCRVWDVEGR----EYLDFAGGIAVLNTGH-LHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMNQK 96 (425)
T ss_pred CceEEe--eeeCEEEeCCCC----EEEEcCCchhhcCCCC-CCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHh
Confidence 456666 788999999999 9999999999999999 899999999999999887654445688999999999998
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
.|.++.++++|++||+||||.|||+| |.| ++| .+||+|+++|||+|.+++++++...
T Consensus 97 ~~~~~~~~~~f~~sGsea~e~Alkla-r~~-------~~r-----------~~iv~~~~~yHG~~~~~~~~~~~~~---- 153 (425)
T PRK08088 97 VPGDFAKKTLLVTTGSEAVENAVKIA-RAA-------TKR-----------SGVIAFTGAYHGRTHYTLALTGKVN---- 153 (425)
T ss_pred CCCCCCCEEEEeCCcHHHHHHHHHHH-HHH-------hCC-----------CeEEEECCccCCccHHHHHhhCCCC----
Confidence 87653469999999999999999999 566 343 6899999999999999999876321
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
++..+++++ + .++.++++|..+ ++. + .+.+.+.+++.+++ ..
T Consensus 154 ---~~~~~~~~~--~------~~~~~~~~p~~~----------------------~~~-~-~~~~~~~l~~~l~~---~~ 195 (425)
T PRK08088 154 ---PYSAGMGLM--P------GHVYRALYPCPL----------------------HGV-S-EDDAIASIERIFKN---DA 195 (425)
T ss_pred ---ccccCCCCC--C------CCcEEcCCCccc----------------------cCc-c-HHHHHHHHHHHHHh---cc
Confidence 111222211 1 123344444322 010 0 11224556666642 12
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++++|+||+||+ |+++|+++++++|+++|+++|++||+++|.|||++||||+|.+++++++++.|||++|||++++|
T Consensus 196 ~~~~~aavi~Epi-~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G- 273 (425)
T PRK08088 196 APEDIAAIIIEPV-QGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIAGG- 273 (425)
T ss_pred CCCceEEEEECcc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCEEEEeccccCC-
Confidence 4578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+... .+.+||+++|++|+++.++|+.++++++.+++++.++++++.+ .++..++|
T Consensus 274 ~rig~v~~~~~~~~~~~~~------~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l----~~l~~~~~ 343 (425)
T PRK08088 274 FPLAGVTGRAEVMDAIAPG------GLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGL----LAIAEKHP 343 (425)
T ss_pred CcceeeEecHHHHhhcCCC------CCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHHhCC
Confidence 8999999999999988642 3778999999999999999999977778888888777777644 45566788
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.+..++|.|+|+++++.++.....+....+..+...|+++||++.+. ++.+|+.||+.+++++|++.+++|.+++.+
T Consensus 344 ~~~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~ 423 (425)
T PRK08088 344 EIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIIAQCFDE 423 (425)
T ss_pred CeEEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHh
Confidence 88999999999999996542111122345778999999999988764 389999999999999999999999999875
Q ss_pred H
Q 002941 853 F 853 (863)
Q Consensus 853 l 853 (863)
+
T Consensus 424 ~ 424 (425)
T PRK08088 424 A 424 (425)
T ss_pred h
Confidence 4
No 73
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=100.00 E-value=2.4e-54 Score=495.58 Aligned_cols=387 Identities=19% Similarity=0.284 Sum_probs=307.4
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.+|++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|+++..+. .+.++...+|+|+|++.
T Consensus 31 p~~~~~--~~G~~l~d~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~---~~~~~~~~~lae~l~~~ 100 (423)
T TIGR00713 31 PFFVAR--GKGAYLYDVDGN----EYIDYVLSWGPLILGH-AHPRVVEAVKEALERGTSY---GAPTEAEILLAKEIISR 100 (423)
T ss_pred CeeEEe--ccCCEEEeCCCC----EEEEccccccccccCC-CCHHHHHHHHHHHHhCCcC---CCCCHHHHHHHHHHHHh
Confidence 566776 889999999999 9999999999999999 8999999999999986542 35688899999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
++. .++|+|++|||||||+|+|+| |.| +|| .+||+++++|||++.+++++++......
T Consensus 101 ~~~--~~~v~~~~sGseA~e~Alk~a-r~~-------~gr-----------~~ii~~~~~yhG~~~~~~~~~~~~~~~~- 158 (423)
T TIGR00713 101 VPS--VEMVRFVNSGTEATMSAVRLA-RGY-------TGR-----------DKIIKFEGCYHGHHDALLVKAGSGAATL- 158 (423)
T ss_pred CCc--ccEEEEeCCHHHHHHHHHHHH-HHh-------hCC-----------CEEEEEcCCCCCChhhhhccccCccccc-
Confidence 875 379999999999999999999 566 354 7899999999999887777654321110
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
..++... . +.... ... +.+| .+| .+.+++.+++
T Consensus 159 -~~~~~~~----~--~~~~~-~~~--~~~~------------------------~~d--------~~~l~~~i~~----- 191 (423)
T TIGR00713 159 -GLPTSPG----V--PEDFA-KLT--LVLP------------------------YND--------LEALEEVFEE----- 191 (423)
T ss_pred -CCCCCCC----C--Ccccc-cce--EEeC------------------------CCC--------HHHHHHHHHH-----
Confidence 0011000 0 00000 000 0111 012 2445666642
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
.++++++||+||+ ++++|+++++++|+++|+++|++||++||+||||||| |+|.+|+++++++.||++||||++++|
T Consensus 192 ~~~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~-r~g~~~~~~~~~~~pDi~t~sK~l~~G- 268 (423)
T TIGR00713 192 YGEEIAGVIVEPV-AGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVALGGAQEYFGVEPDLTTLGKIIGGG- 268 (423)
T ss_pred cCCcEEEEEEeCC-CCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc-ccCcchhHHHhCCCcchhhhhhhhcCC-
Confidence 2468999999998 9999999988999999999999999999999999999 999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+.... .+.+++||++||++|++++++|+.++++++.++++++++++++.+ .+.+.+++
T Consensus 269 ~pig~v~~~~~i~~~~~~~~---~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~ 341 (423)
T TIGR00713 269 LPVGAFGGRREIMERLAPEG---PVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGL----SEVLEDTG 341 (423)
T ss_pred CceeeeeEHHHHHHhhCcCC---CeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH----HHHHHhcC
Confidence 89999999999999986421 245789999999999999999999988778888888888887755 45566788
Q ss_pred CeeEecccceEEEEEEccCCcCC-----CCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNA-----GYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~-----~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
.+.+++|.|+|+++++..+.... .........++..|+++||++.+.+ +.++++|+ +|+++|++++++|+++
T Consensus 342 ~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~l~~~--~t~~~i~~~~~~l~~~ 419 (423)
T TIGR00713 342 IPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQFEACFLSAA--HTEEDIENTIEAAEEV 419 (423)
T ss_pred CCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecCCccceeeECC--CCHHHHHHHHHHHHHH
Confidence 88899999999999997542110 0112335578889999999998754 56788765 8999999999999998
Q ss_pred HHHH
Q 002941 850 LEEF 853 (863)
Q Consensus 850 l~~l 853 (863)
++++
T Consensus 420 l~~~ 423 (423)
T TIGR00713 420 FAEL 423 (423)
T ss_pred HhhC
Confidence 8653
No 74
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=100.00 E-value=3e-54 Score=494.62 Aligned_cols=387 Identities=20% Similarity=0.285 Sum_probs=308.2
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
+.++++ ++|+|+||.||+ +|||+++|+|++++|| +||+|++|+.+|+++..+ ..+.++...+|+++|+++
T Consensus 33 ~~~~~~--a~G~~l~d~dG~----~~lD~~~g~~~~~lGh-~~p~i~~a~~~~~~~~~~---~~~~~~~~~~la~~L~~~ 102 (426)
T PRK00062 33 PRFIER--AKGAYLYDVDGN----EYIDYVGSWGPMILGH-AHPEVVEAVIEAAEKGLS---FGAPTELEVELAELVIEL 102 (426)
T ss_pred CeEEEe--CcCCEEEeCCCC----EEEEcccchhhhhcCC-CCHHHHHHHHHHHHhCCc---CCCCCHHHHHHHHHHHHh
Confidence 456666 788999999999 9999999999999999 899999999999998432 245788999999999998
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
+|. .++|+|++||+||||+|+|+| +.| +|| ++||+|+++|||+|.++.+.++.....
T Consensus 103 ~~~--~~~v~~~~sGseA~e~Aik~a-~~~-------~g~-----------~~ii~~~~~yHG~t~~~~~~~~~~~~~-- 159 (426)
T PRK00062 103 VPS--IEMVRMVNSGTEATMSAIRLA-RGY-------TGR-----------DKIIKFEGCYHGHADSLLVKAGSGAAT-- 159 (426)
T ss_pred CCC--CCEEEEecCHHHHHHHHHHHH-HHH-------hCC-----------CeEEEEcCccCCchhhhhhccCccccc--
Confidence 863 579999999999999999999 555 343 789999999999998887775432111
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+..++... ...+. .+.. ..+| .+| .+.+++.+++
T Consensus 160 ~~~~~~~~----~~~~~---~~~~--~~~~------------------------~~d--------~~~l~~~i~~----- 193 (426)
T PRK00062 160 LGLPDSPG----VPEDF---AKHT--LTAP------------------------YND--------LEAVEELFEE----- 193 (426)
T ss_pred cCCCCCCC----CCccc---ccce--EEcC------------------------CCC--------HHHHHHHHHh-----
Confidence 00011000 00000 0000 0111 022 2445555642
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
.++++++||+||+ ||++|+++++++||++|+++|++||+++|+||||||| |+|.+|+++++++.||++++||++++|
T Consensus 194 ~~~~~aaiivEpv-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~~~~~~~~~~~pDi~~~gK~l~~G- 270 (426)
T PRK00062 194 YGDEIAAVIVEPV-AGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGAQGYYGVTPDLTTLGKIIGGG- 270 (426)
T ss_pred CCCcEEEEEEeCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCCccHHHHhCCCcchHhhhhHhhCC-
Confidence 3468999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+.... .+.+.+||++||++|++++++|++++++++++++.++++++++.| .+...+++
T Consensus 271 ~p~ga~~~~~~i~~~~~~~~---~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~ 343 (426)
T PRK00062 271 LPVGAFGGRREIMEQLAPLG---PVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGL----KEAAKKAG 343 (426)
T ss_pred CcceeeeEHHHHHHhhccCC---CceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH----HHHHHHcC
Confidence 89999999999999986321 245778999999999999999999988788888888888887754 45566788
Q ss_pred CeeEecccceEEEEEEccCCcC-----CCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~-----~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
.+.++||.|+|+++++.++... .......+..+...|+++||++.+.+ +.+++ ++++|++||++++++|+++
T Consensus 344 ~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~~~~~~~--~~~~t~~ei~~~~~~l~~~ 421 (426)
T PRK00062 344 IPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQFEAGFV--SAAHTDEDIEKTLEAARKA 421 (426)
T ss_pred CceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecCCcCceee--eccCCHHHHHHHHHHHHHH
Confidence 8889999999999999754211 00122345789999999999999876 55554 5899999999999999999
Q ss_pred HHHH
Q 002941 850 LEEF 853 (863)
Q Consensus 850 l~~l 853 (863)
++++
T Consensus 422 l~~~ 425 (426)
T PRK00062 422 FAAL 425 (426)
T ss_pred HHhh
Confidence 8764
No 75
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=100.00 E-value=9.5e-54 Score=487.28 Aligned_cols=379 Identities=22% Similarity=0.321 Sum_probs=308.3
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ ++|+++||.||+ +|||++|++|+.++|| +||+|++|+.+|++++.+... .+.+++..+|+++|+++
T Consensus 20 ~~~~~~--~~g~~~~~~~g~----~~lD~~s~~~~~~~Gh-~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~ 91 (401)
T TIGR01885 20 PVVFSK--AEGVHVWDVEGK----RYLDFLSAYSAVNQGH-CHPKIVKALTEQAQKLTLSSR-AFYNDVFGEFAEYVTKL 91 (401)
T ss_pred CceEEe--eecCEEEeCCCC----EEEEcccCHhhccCCC-CCHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHhh
Confidence 345555 788999999999 9999999999999999 899999999999999876542 34789999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhc-cccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH-EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~-G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
++ .++++|++||+||||+|||+| |.|+.++ |..+| +++|++++++|||++.+++++++.+.+..
T Consensus 92 ~~---~~~~~~~~SGs~A~e~ai~~a-~~~~~~~~~~~~~-----------~~~i~~~~~~yhg~~~~~~~~~~~~~~~~ 156 (401)
T TIGR01885 92 FG---YDKVLPMNTGAEAVETAIKLA-RKWGYKVKGIPEN-----------QAIIVSAKGNFHGRTLGAISMSTDPDSRT 156 (401)
T ss_pred cC---CCEEEEeCccHHHHHHHHHHH-HHHhhhhcCCCCC-----------CCEEEEECCCcCcccHHHHhCcCCccccc
Confidence 87 479999999999999999999 5664332 32223 37899999999999999999987543321
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
.+++.. + ++.+++++ | .+.+++.+++
T Consensus 157 --------~~~~~~--~------~~~~~~~~--------------------------d--------~~~le~~l~~---- 182 (401)
T TIGR01885 157 --------NFGPYV--P------GFKKIPYN--------------------------N--------LEALEEALED---- 182 (401)
T ss_pred --------ccCCCC--C------CceEeCCC--------------------------C--------HHHHHHHHHh----
Confidence 111110 1 11222221 1 2445666643
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.++++++||+||+ ++++|++.|+++||++|+++|++||+++|+|||||||||+|++++++++++.||++|+||+++||
T Consensus 183 -~~~~~~avi~E~v-~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~~~gK~l~~g 260 (401)
T TIGR01885 183 -HGPNVCAFIVEPI-QGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVLLGKALSGG 260 (401)
T ss_pred -cCCCEEEEEEeCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCEEEeeccccCC
Confidence 2467999999998 99999999999999999999999999999999999999999998888899999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
++|+|++++++++++.+... .+.+||+++|++|++++++|++++++++.++++++++++++.| .++ .+
T Consensus 261 ~~~ig~v~~~~~i~~~~~~~------~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~~~~~~~~~~~L----~~l--~~ 328 (401)
T TIGR01885 261 VYPVSAVLADDDVMLTIKPG------EHGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFRDQL----KKL--PK 328 (401)
T ss_pred CCCcEEEEEcHHHHhhccCC------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----Hhc--cC
Confidence 89999999999999987642 3668999999999999999999987677777777666666543 332 34
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
+.+.+++|.|+|+++++..+.. ...+.++++.|.++||++.|.+ +.+||.||+.+|+++|++++++|++++
T Consensus 329 ~~~~~~~g~g~~~~i~~~~~~~-----~~~~~~l~~~l~~~Gv~v~~~~~~~lRi~p~l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 329 PIITEVRGRGLLNAIVIDESKT-----GRTAWDLCLKLKEKGLLAKPTHGNIIRLAPPLVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred CceeEEeecCeeEEEEeccCcc-----hhHHHHHHHHHHhCCEEEEecCCCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence 6778899999999999964320 1236788999999999998875 899999999999999999999998876
No 76
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=100.00 E-value=1.1e-53 Score=490.15 Aligned_cols=377 Identities=19% Similarity=0.228 Sum_probs=288.5
Q ss_pred CeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHh
Q 002941 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (863)
Q Consensus 375 ~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (863)
.|+++++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++.+. ...++...+|+++|++
T Consensus 30 ~p~~~~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~~~~---~~~~~~~~~la~~l~~ 99 (431)
T PRK06209 30 APGFIQR--GSGAHVWDVDGN----EYIEYGMGLRAVGLGH-AYPPVVEAVREALQDGCNF---TRPSAIELDAAESFLE 99 (431)
T ss_pred CCeEEEe--ccCCEEEeCCCC----EEEEccccccchhcCC-CCHHHHHHHHHHHHhCcCC---CCCCHHHHHHHHHHHH
Confidence 4566766 889999999999 9999999999999999 8999999999999987542 2456667789999999
Q ss_pred hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEe-cCCCccCccccceecCCCCCC
Q 002941 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL-KGSYHGDTLGAMEAQAPSPYT 533 (863)
Q Consensus 455 ~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~-~~sYHG~t~gals~t~~~~~~ 533 (863)
++|. .++|+|+||||||||+|||+| |.| +|| ++|+.+ .++|||...+....+... .
T Consensus 100 ~~p~--~~~v~f~~sGseA~e~AlklA-r~~-------tgr-----------~~i~~~~~~~~h~~~~~~~g~~~~~--~ 156 (431)
T PRK06209 100 LIDG--ADMVKFCKNGSDATSAAVRLA-RAY-------TGR-----------DLVARCADHPFFSTDDWFIGTTPMS--A 156 (431)
T ss_pred hCCc--cceEEEecCHHHHHHHHHHHH-HHH-------hCC-----------CeEEEeccCccccccccccccCCCC--C
Confidence 9874 579999999999999999999 667 464 789999 788887432211100000 0
Q ss_pred CCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 002941 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (863)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~ 613 (863)
+ .+. ...+ .+. .|+ .+| .+.+++.+++
T Consensus 157 ~---------------~~~-----~~~~--~~~------------~~~--------~~d--------~~~l~~~l~~--- 183 (431)
T PRK06209 157 G---------------IPA-----SVSA--LTV------------TFR--------YND--------IASLEALFED--- 183 (431)
T ss_pred C---------------CCh-----hHhc--ccc------------ccC--------CCC--------HHHHHHHHHh---
Confidence 0 000 0000 000 010 122 2456666653
Q ss_pred CCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCC
Q 002941 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (863)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLgg 693 (863)
+++++|+||+||+ +|+ .++++||++|+++|++||++||+|||||||++++ +++.+++|+.|||+|+||+|||
T Consensus 184 --~~~~~aavi~Epv-~g~----~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~-~g~~~~~gv~PDi~t~gK~lgg 255 (431)
T PRK06209 184 --HPGRIACVILEPA-TAD----EPQDGFLHEVRRLCHENGALFILDEMITGFRWHM-RGAQKLYGIVPDLSCFGKALGN 255 (431)
T ss_pred --CCCCEEEEEEccc-cCC----CCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc-chhhHHhCCCcceeeehhhhcC
Confidence 3568999999998 775 7889999999999999999999999999997753 3344568999999999999999
Q ss_pred CCCCceeeeccHHHHHh--hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHH
Q 002941 694 GVIPLAATLATNAVFDS--FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQI 771 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~--l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~ 771 (863)
| +|+|++++++++++. +......+.+.|++||++||++||+++++|++++++++.++++++++++++.| .++.
T Consensus 256 G-~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L----~~~~ 330 (431)
T PRK06209 256 G-FAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLAAGV----NEAA 330 (431)
T ss_pred C-cccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH----HHHH
Confidence 9 799999999999997 32111123466899999999999999999999998888899999988888755 4455
Q ss_pred hcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 772 SSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 772 ~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.+++.+.++|+.|+++.+++................+.+.|+++||++.| + ..+..+|++||++++++|+++++
T Consensus 331 ~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~p~----l--~is~~ht~~dId~~l~~l~~~l~ 404 (431)
T PRK06209 331 AEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRRGVLMPS----L--VVSYAHGDADIERTIDAVHGALG 404 (431)
T ss_pred HhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHHCCccccc----c--cccccCCHHHHHHHHHHHHHHHH
Confidence 67888889999999999988743211112233445788999999998743 2 22457799999999999999999
Q ss_pred HHHHH
Q 002941 852 EFDKV 856 (863)
Q Consensus 852 ~l~~~ 856 (863)
++.+.
T Consensus 405 ~~~~~ 409 (431)
T PRK06209 405 VYRKA 409 (431)
T ss_pred HHHHH
Confidence 88554
No 77
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=100.00 E-value=2.8e-53 Score=483.70 Aligned_cols=378 Identities=23% Similarity=0.331 Sum_probs=310.1
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ ++|+|+||.||+ +|+|+++|+|++++|| +||+|.+|+.+|++++.+... .+.+++..+|+++|+++
T Consensus 23 ~~~~~~--~~G~~~~d~dG~----~~iD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~ 94 (403)
T PRK05093 23 EFIPVR--GEGSRVWDQQGK----EYIDFAGGIAVTALGH-CHPALVKALKEQGEKLWHISN-VFTNEPALRLAKKLIDA 94 (403)
T ss_pred CeeEEE--eecCEEEeCCCC----EEEEcCcCHHhccCCC-CCHHHHHHHHHHHHhcCcccC-ccCCHHHHHHHHHHHhh
Confidence 456665 788999999999 9999999999999999 999999999999998765432 35688899999999998
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
.+ .++++|++||+||||+|+|+| |.|+..++. ++ +.+||+++++|||+|.+++++++.+.++.
T Consensus 95 ~~---~~~~~~~~sGseA~e~a~kla-r~~~~~~~~-~~-----------~~~ii~~~~~~HG~~~~~~~~~~~~~~~~- 157 (403)
T PRK05093 95 TF---AERVFFANSGAEANEAAFKLA-RRYACDRHG-PE-----------KTEIIAFHNSFHGRTLFTVSVGGQPKYSD- 157 (403)
T ss_pred CC---CCEEEEeCchHHHHHHHHHHH-HHHHhhcCC-CC-----------CCeEEEEcCCcCCchhhhHhhcCChhhhh-
Confidence 75 479999999999999999999 667543321 12 37899999999999999999887543321
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+..+. + .++.+++++ | .+.+++.+.
T Consensus 158 -------~~~~~--~------~~~~~~~~~--------------------------d--------~~~l~~~l~------ 182 (403)
T PRK05093 158 -------GFGPK--P------ADITHVPFN--------------------------D--------LAAVKAVID------ 182 (403)
T ss_pred -------cCCCC--C------CCcEEeCCC--------------------------C--------HHHHHHHhc------
Confidence 11110 0 112222222 2 134455452
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++++||+||+ +++||+++++++|+++|+++|++||+++|+|||++||||+|++++++++++.||+++|||++++|
T Consensus 183 --~~~aaiiiep~-~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G- 258 (403)
T PRK05093 183 --DHTCAVVVEPI-QGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTSAKALGGG- 258 (403)
T ss_pred --CCeEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCEEEecccccCC-
Confidence 36899999998 99999999999999999999999999999999999999999988888999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+... .+.+||+++|++|++++++|++++++++.++++++.+++.+.| .+...+++
T Consensus 259 ~rig~vv~~~~i~~~l~~~------~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L----~~~~~~~~ 328 (403)
T PRK05093 259 FPIGAMLTTAEIASHFKVG------THGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGL----QKINQKYG 328 (403)
T ss_pred cceEEEEEcHHHHhhcCCC------CCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH----HHHHhhCC
Confidence 8999999999999988642 4678999999999999999999987777788887777777655 33334567
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.+..+++.|+++++++.... ...+.+++..|+++||++.+.| +.+|+.|++++++++|++++++|+++++++
T Consensus 329 ~~~~~~~~G~~~~~~l~~~~------~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~~~~~~~~~~i~~~~~~l~~~l~~~ 401 (403)
T PRK05093 329 VFSEIRGMGLLIGAELKPQY------KGRARDFLNAAAEEGVMVLVAGPDVLRFAPSLVIEEADIDEGLARFEKAVAKV 401 (403)
T ss_pred CeEeEeeCceEEEEEecCcc------hhHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 77899999999999996421 0135678999999999999876 899999999999999999999999988754
No 78
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=100.00 E-value=1.4e-52 Score=477.16 Aligned_cols=371 Identities=22% Similarity=0.253 Sum_probs=307.5
Q ss_pred CeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHh
Q 002941 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (863)
Q Consensus 375 ~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (863)
.|.++++ ++|+++||.||+ +|||+.+|+|++++|| +||+|++|+.+|++++++.. ..+.++...+|+++|++
T Consensus 25 ~~~~~~~--~~G~~~~d~dg~----~~lD~~s~~~~~~lG~-~~p~v~~ai~~~~~~~~~~~-~~~~~~~~~~la~~l~~ 96 (398)
T PRK03244 25 PPLALVR--GEGAVVWDVDGK----EYLDLLGGIAVNALGH-AHPAVVEAVTRQLATLGHVS-NLFATEPQIALAERLVE 96 (398)
T ss_pred CCceEEE--eeecEEEECCCC----EEEECCcCHhhccCCC-CCHHHHHHHHHHHHhccCcc-CccCCHHHHHHHHHHHH
Confidence 3567776 788999999999 9999999999999999 89999999999999987653 34678888999999999
Q ss_pred hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 455 ~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
.++....++++|++||+|||+.|+|+++ .+ || .+||.++++|||++.+++++++...+..
T Consensus 97 ~~~~~~~~~v~~~~sgsea~~~al~~~~-~~--------g~-----------~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 156 (398)
T PRK03244 97 LLGAPEGGRVFFCNSGAEANEAAFKLAR-LT--------GR-----------TKIVAAEGGFHGRTMGALALTGQPAKRA 156 (398)
T ss_pred hCCCCCCCEEEEeCchHHHHHHHHHHHH-HH--------CC-----------CeEEEECCCcCCccHHHHhccCCccccc
Confidence 9874324699999999999999999994 22 43 6899999999999999998876443321
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
.+ .+. . ..+..++++ | .+.+++.+.
T Consensus 157 ~~--------~~~-~-------~~~~~~~~~--------------------------d--------~~~l~~~~~----- 181 (398)
T PRK03244 157 PF--------EPL-P-------GGVEHVPYG--------------------------D--------VDALAAAVD----- 181 (398)
T ss_pred CC--------CCC-C-------CCceEeCCC--------------------------C--------HHHHHHhhc-----
Confidence 10 000 0 011112211 1 133444442
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
+++++|++||+ |+++|+++|+++|+++|+++|++||++||+|||+|||||+|++++++++++.||++||||++++|
T Consensus 182 ---~~~~aviiep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~t~sK~l~~G 257 (398)
T PRK03244 182 ---DDTAAVFLEPI-QGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVVTLAKGLGGG 257 (398)
T ss_pred ---CCeEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCCEEEEchhhhCC
Confidence 47899999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+.. ..+.+||++||++|++++++|++++++++.+++.++++++++.| .++ .+
T Consensus 258 -~~ig~~~~~~~~~~~~~~------~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L----~~~--~~ 324 (398)
T PRK03244 258 -LPIGACLAFGPAADLLTP------GLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQLRAGI----EAL--GH 324 (398)
T ss_pred -cccEEEEEcHHHHhhccC------CCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----Hhc--CC
Confidence 899999999999998754 24788999999999999999999987778888888777776644 222 36
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
|.+..++|.|+++++++..+ .+..+.+.|+++||++++.+ +.+|+.||+.++++||++++++|++++.++
T Consensus 325 ~~~~~v~g~g~~~~i~~~~~---------~~~~~~~~l~~~Gv~~~~~~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~ 395 (398)
T PRK03244 325 PLVDHVRGRGLLLGIVLTAP---------VAKAVEAAAREAGFLVNAVAPDVIRLAPPLIITDAQVDAFVAALPAILDAA 395 (398)
T ss_pred CceeeEeeccEEEEEEEecc---------HHHHHHHHHHHCCeEEeecCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 77889999999999999632 35678999999999999865 899999999999999999999999999765
Q ss_pred H
Q 002941 854 D 854 (863)
Q Consensus 854 ~ 854 (863)
.
T Consensus 396 ~ 396 (398)
T PRK03244 396 A 396 (398)
T ss_pred c
Confidence 4
No 79
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=100.00 E-value=4.5e-52 Score=469.43 Aligned_cols=365 Identities=24% Similarity=0.312 Sum_probs=302.8
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
+.++++ |+|+|+||.||+ +|||++|++|++++|| +||+|++|+.+|++++.+.. ..+.++...+|+++|++.
T Consensus 12 ~~~~~~--~~G~~~~d~~G~----~~lD~~s~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~ 83 (377)
T PRK02936 12 PIDIVK--GKGTKVTDNNGK----TYLDFTSGIAVCNLGH-CHPTVTKAVQEQLDDIWHVS-NLFTNSLQEEVASLLAEN 83 (377)
T ss_pred CceEEE--eecCEEEeCCCC----EEEECCcchhhccCCC-CCHHHHHHHHHHHHhccccc-cccCCHHHHHHHHHHHhc
Confidence 456666 788999999999 9999999999999999 89999999999999875543 235688899999999998
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
.| .++++|++||+|||++|+|+| +.| +|| .+||+++++|||++.+++++++...++.
T Consensus 84 ~~---~~~~~~~~sG~~a~~~A~~~a-~~~-------~g~-----------~~vi~~~~~~Hg~~~~~~~~~~~~~~~~- 140 (377)
T PRK02936 84 SA---GDLVFFCNSGAEANEAALKLA-RKH-------TGK-----------SKIVTFEQSFHGRTFGTMSATGQEKIKE- 140 (377)
T ss_pred CC---CCEEEEeCCcHHHHHHHHHHH-HHh-------cCC-----------CeEEEECCCcCCCcHHhhhccCCccccc-
Confidence 76 368999999999999999999 555 343 7899999999999999999876543321
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
.+++.. +++.+++++ | .+.+++.+.
T Consensus 141 -------~~~~~~--------~~~~~~~~~--------------------------d--------~~~l~~~~~------ 165 (377)
T PRK02936 141 -------GFGPLL--------PGFTHVPFN--------------------------D--------IKALKEVMN------ 165 (377)
T ss_pred -------cCCCCC--------CCceEeCCC--------------------------C--------HHHHHHhcc------
Confidence 111110 111112211 1 133444442
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++++||+||+ ++++|+.+++++|+++|+++|++||+++|+||||+||||+|.+++++++++.||++||||++++|
T Consensus 166 --~~~~~ii~e~i-~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G- 241 (377)
T PRK02936 166 --EEVAAVMLEVV-QGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVTVAKGLGNG- 241 (377)
T ss_pred --CCeEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEEEEcccccCC-
Confidence 45899999998 99999999999999999999999999999999999999999988888999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+... .+.+||++||++|++++++|+.++++++++++.++++++++.| .+.+.+++
T Consensus 242 ~~ig~v~~~~~~~~~~~~~------~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L----~~~~~~~~ 311 (377)
T PRK02936 242 IPVGAMIGKKELGTAFGPG------SHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKL----QEELEHLE 311 (377)
T ss_pred CccEEEEEcHHHHhhccCC------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----HHHHhhCC
Confidence 8999999999999988642 3678999999999999999999876677888888887777654 44455678
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.+..+++.|+++.+++.++ ...+.+.|+++||++.|.+ +.+||.||+.++++++++++++|++++
T Consensus 312 ~~~~v~~~g~~~~i~~~~~----------~~~~~~~l~~~gv~v~~~g~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 312 CVKNIRGKGLMIGIECTEE----------VAPVIEQLREEGLLVLSAGPNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred cEEeEeecceEEEEEecch----------HHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 8888999999999998642 4568889999999999877 899999999999999999999998764
No 80
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=100.00 E-value=1.7e-51 Score=468.49 Aligned_cols=375 Identities=20% Similarity=0.266 Sum_probs=305.3
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
+.++++ ++|+|+||.||+ +|||+++|+|+.++|| +||+|++|+.+|++++.+... .+.++...+|+++|+++
T Consensus 24 ~~~~~~--~~G~~~~d~~g~----~~lD~~~~~~~~~~Gh-~~~~i~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~ 95 (401)
T PRK00854 24 DVVLTR--GEGVWVWDTDGN----RYLDCLSAYSAVNQGH-CHPKILAAMVEQAGRLTLTSR-AFRNDQLAPLYEELAAL 95 (401)
T ss_pred CceEEe--eeeCEEEECCCC----EEEEcCcchhhccCCC-CCHHHHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHhh
Confidence 345655 788999999999 9999999999999999 899999999999999887542 45688999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHh-hccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSF-DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~-~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
++ .++++|+|||+||||.|||+| +.|++ .+|.++|| .+||++.++|||++.+++++++.+.++.
T Consensus 96 ~~---~~~~~~~~SGs~A~e~al~~a-~~~~~~~~g~~~~~-----------~~vi~~~~~~HG~~~~~~~~~~~~~~~~ 160 (401)
T PRK00854 96 TG---SHKVLPMNSGAEAVETAIKAV-RKWGYEVKGVPEGQ-----------AEIIVCADNFHGRTLSIVGFSTDPDARG 160 (401)
T ss_pred CC---CCEEEEeCCcHHHHHHHHHHH-HHHHHhccCCCCCC-----------ceEEEECCCcCCccHHHHhccCCccccc
Confidence 87 369999999999999999999 55643 23433333 7899999999999999888876543322
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
. ++++ . .++.+++++ | .+.+++.+.
T Consensus 161 ~--------~~~~--~------~~~~~~~~~--------------------------d--------~~~le~~i~----- 185 (401)
T PRK00854 161 G--------FGPF--T------PGFRVVPFG--------------------------D--------AEALEAAIT----- 185 (401)
T ss_pred c--------CCCC--C------CCeEEeCCC--------------------------C--------HHHHHHHhC-----
Confidence 1 1111 0 122223222 1 134555552
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
+++++||+||+ +|++|.+.++++||++|+++|++||++||+||||+||||+|.+++.+++|+.||++++||+++||
T Consensus 186 ---~~~~aii~e~~-~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~~K~l~gg 261 (401)
T PRK00854 186 ---PNTVAFLVEPI-QGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLIGKALSGG 261 (401)
T ss_pred ---CCeEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEEecccccCC
Confidence 36899999998 99999999999999999999999999999999999999999988888999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
++|+|++++++++++.+.. ..++.||+++|++|++++++|+.++++++.++++++++++.+.|. +. ..
T Consensus 262 ~~~ig~v~~~~~~~~~l~~------~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~~L~----~~--~~ 329 (401)
T PRK00854 262 FYPVSAVLSNSEVLGVLKP------GQHGSTFGGNPLACAVARAALKVLTEEGMIENAAEMGAYFLEGLR----SI--RS 329 (401)
T ss_pred ccCeEEEEEcHHHHhcccC------CCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH----hh--cc
Confidence 8999999999999998753 247789999999999999999998776677777777777766443 22 22
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+.+.+++|.|+|+.+++..+. .....+++.|+++||++.+.+ +.+|++||+.+++++|++++++|++++.
T Consensus 330 ~~~~~~~g~g~~~~i~~~~~~-------~~~~~~~~~L~~~GV~v~~~~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 330 NIVREVRGRGLMLAVELEPEA-------GGARQYCEALKERGLLAKDTHDHTIRLAPPLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred CceEEEeccceEEEEEEecCc-------hhHHHHHHHHHHCCeEEecCCCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence 446778999999999886432 135678999999999998764 8999999999999999999999998763
No 81
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=100.00 E-value=1e-50 Score=461.74 Aligned_cols=382 Identities=23% Similarity=0.332 Sum_probs=307.5
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ ++|+|+||.||+ +|||+++|+|+.++|| +||+|++|+.+|++++.+.+. .+.++...+++++|+++
T Consensus 14 ~~~~~~--~~G~~~~d~dg~----~~lD~~~~~~~~~~Gh-~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 85 (400)
T PTZ00125 14 PVVLKR--GKGVFVWDVEGK----KYYDFLSAYSAVNQGH-CHPKILAALINQAQKLTLTSR-AFYNDVLGLAEKYITDL 85 (400)
T ss_pred CccEEe--eecCEEEeCCCC----EEEEcccCHhhccCCc-CCHHHHHHHHHHHHhcccccc-cccCHHHHHHHHHHHhC
Confidence 446665 788999999999 9999999999999999 899999999999999887653 34577888888888887
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHH-hhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFS-FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~-~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
.+ .++++|++||++|||+|||++ +.|+ ..+|.+++ +.+||+++++|||++.+++++++...+..
T Consensus 86 ~~---~~~~~~~~SGs~A~e~al~~~-~~~~~~~~~~~~~-----------~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~ 150 (400)
T PTZ00125 86 FG---YDKVLPMNSGAEAGETALKFA-RKWGYEVKGIPEN-----------QAKIIFCNGNFSGRTIGACSASTDPKCYN 150 (400)
T ss_pred CC---CCEEEEeCCcHHHHHHHHHHH-HHHHHhccCCCCC-----------CCeEEEECCCcCCccHHHHhhcCCcchhc
Confidence 65 579999999999999999999 4443 22222112 37899999999999999999876432211
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
.+.++. + ++..+++ +| .+.+++.++
T Consensus 151 --------~~~~~~--~------~~~~~~~--------------------------~d--------~~~le~~l~----- 175 (400)
T PTZ00125 151 --------NFGPFV--P------GFELVDY--------------------------ND--------VEALEKLLQ----- 175 (400)
T ss_pred --------cCCCCC--C------CceEeCC--------------------------CC--------HHHHHHHhC-----
Confidence 111110 0 1111111 12 244555553
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.+++++|++||+ ++++|++.++++|+++|+++|++||++||+|||++||||+|++++.+++++.||++++||++++|
T Consensus 176 --~~~~~~v~~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~~sK~l~~g 252 (400)
T PTZ00125 176 --DPNVAAFIVEPI-QGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVLLGKALSGG 252 (400)
T ss_pred --CCCeEEEEEcCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCEEEEcccccCC
Confidence 246999999998 99999999999999999999999999999999999999999988988899999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
++|+|++++++++++.+... .+..||+++|++++++.++|++++++++.+++.++++.+++. +.+++..+
T Consensus 253 ~~~ig~v~~~~~~~~~~~~~------~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l~~~----l~~l~~~~ 322 (400)
T PTZ00125 253 LYPISAVLANDDVMLVIKPG------EHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFRDG----LKELLKKS 322 (400)
T ss_pred CcCcEEEEEcHHHHhhccCC------CCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH----HHHHHhcC
Confidence 77999999999999987642 366789999999999999999997777777777766666654 44455667
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+.+..+++.|+++++++..+. ......+++.|+++||++.|.+ +.+||.|++.++++++++++++|++++.++
T Consensus 323 ~~~~~~~~~g~~~~v~~~~~~------~~~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~~ 396 (400)
T PTZ00125 323 PWVKEIRGKGLLNAIVFDHSD------GVNAWDLCLKLKENGLLAKPTHDNIIRFAPPLVITKEQLDQALEIIKKVLKSF 396 (400)
T ss_pred CCeEEEecccEEEEEEEccCc------chHHHHHHHHHHHCCeEEeecCCCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 788889999999999986421 1235678899999999999865 899999999999999999999999998876
Q ss_pred H
Q 002941 854 D 854 (863)
Q Consensus 854 ~ 854 (863)
+
T Consensus 397 ~ 397 (400)
T PTZ00125 397 D 397 (400)
T ss_pred h
Confidence 4
No 82
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=100.00 E-value=3.5e-49 Score=445.82 Aligned_cols=363 Identities=23% Similarity=0.272 Sum_probs=297.7
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.+|++ ++|+|+||.||+ +|||+.||+|++++|| ||+|++|+.+|++++.+.. ..+.++...+|+++|+..
T Consensus 12 ~~~~~~--~~G~~l~d~dg~----~~lD~~s~~~~~~lG~--~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~ 82 (375)
T PRK04260 12 AIEFVK--AEGNYLIDTDGK----KYLDFSSGIGVTNLGF--HPQVQQALQKQAGLIWHSP-NLYLNSLQEEVAQKLIGD 82 (375)
T ss_pred CceEEE--eeeCEEEeCCCC----EEEECCCCcccccCCC--CHHHHHHHHHHHHhcCccc-CccCCHHHHHHHHHHhcC
Confidence 456766 788999999999 9999999999999998 7999999999999875543 235577788888888652
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
+ ..+++|++||+|||+.|+|+| |.+ +|| .+||+++++|||++.+++++++...++..
T Consensus 83 -~---~~~~~~~~SGseA~~~Al~~a-r~~-------~~~-----------~~vv~~~~~yHg~~~~~~~~~~~~~~~~~ 139 (375)
T PRK04260 83 -K---DYLAFFCNSGAEANEAAIKIA-RKA-------TGK-----------QEIITFQNSFHGRTFGSMSATGQDKIKDG 139 (375)
T ss_pred -c---CCEEEEcCccHHHHHHHHHHH-HHh-------cCC-----------CeEEEECCCcCcccHHHHhccCCcccCCC
Confidence 1 246899999999999999999 555 343 68999999999999999998875433321
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+ ++. ++. +...+ .+| .+.+++.+
T Consensus 140 ----~----~~~--~~~------~~~~~--------------------------~~d--------l~~l~~~l------- 162 (375)
T PRK04260 140 ----F----GDG--VPH------FSYAI--------------------------FND--------LNSVKALV------- 162 (375)
T ss_pred ----C----CCC--CCC------eEEeC--------------------------CCC--------HHHHHHhc-------
Confidence 1 110 000 00000 022 23444444
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
.+++++|++||+ ++++|++.++++||++++++|++||+++|+||+++||||+|.++.++.+++.||++||||+|++|
T Consensus 163 -~~~~a~vi~e~v-~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G- 239 (375)
T PRK04260 163 -NKNTAAVMLELV-QGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFTLAKGLANG- 239 (375)
T ss_pred -CCCeEEEEECCe-ECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEEEecccccCC-
Confidence 246899999998 99999999999999999999999999999999999999999988988999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+... .+.+||++||++|+++.++|+.++++++.++++++++++++.+ .+.+.+++
T Consensus 240 ~~ig~~~~~~~~~~~~~~~------~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~ 309 (375)
T PRK04260 240 VPVGAMLAKSSLGGAFGYG------SHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQL----QKALQDKE 309 (375)
T ss_pred cceEEEEEcHHHHhhcCCC------CCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHhhCC
Confidence 8999999999999887642 3778999999999999999999987788888888888888755 44556677
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.+..+++.|+++++++..+ +..+.+.|+++||++.+.+ +.+|+.||+.++++++++++++|++++
T Consensus 310 ~~~~~~~~g~~~~~~~~~~----------~~~~~~~l~~~Gi~v~~~~~~~lR~~~~~~~t~~~i~~~l~~l~~~~ 375 (375)
T PRK04260 310 TVTTVRGLGYMIGIETTAD----------LSQLVEAARDKGLIVLTAGTNVIRLLPPLTLTKEEIEQGIAILSEVF 375 (375)
T ss_pred CeeEEeccceEEEEEecCc----------HHHHHHHHHhCCCEEecCCCCEEEEcCCCccCHHHHHHHHHHHHHhC
Confidence 7889999999999999432 4578999999999998876 789999999999999999999998753
No 83
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=100.00 E-value=1.1e-48 Score=446.40 Aligned_cols=410 Identities=28% Similarity=0.390 Sum_probs=323.3
Q ss_pred hhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccc
Q 002941 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (863)
Q Consensus 355 ~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~ 434 (863)
+++++++|++++ ....|.++++ ++|.++||.||+ +|||+++|+|++++|| +||+|++|+.+|+++..+
T Consensus 3 ~~~~~~~~~~~~-----~~~~~~~~~~--~~g~~~~d~dG~----~~id~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~ 70 (413)
T cd00610 3 ERDRKVLWHGYT-----VRPYPLVIVR--AEGAYLYDVDGN----RYLDFLSGIGVLNLGH-NHPEVVEALKEQLAKLTH 70 (413)
T ss_pred chhhhhcccccc-----CCCCCceEEe--eecCEEEeCCCC----EEEEcCccHHhhccCC-CCHHHHHHHHHHHHhCcC
Confidence 456678899887 1134667776 788999999999 9999999999999999 899999999999988765
Q ss_pred ccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecC
Q 002941 435 VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514 (863)
Q Consensus 435 ~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~ 514 (863)
.....+.++...+|+++|++++|.+ .++++|++||+|||+.|++++ +.+ +++ .+||++++
T Consensus 71 ~~~~~~~~~~~~~l~~~l~~~~~~~-~~~v~~~~sgsea~~~al~~~-~~~-------~~~-----------~~ii~~~~ 130 (413)
T cd00610 71 FSLGFFYNEPAVELAELLLALTPEG-LDKVFFVNSGTEAVEAALKLA-RAY-------TGR-----------KKIISFEG 130 (413)
T ss_pred ccCcccCCHHHHHHHHHHHHhCCCC-CCEEEEcCcHHHHHHHHHHHH-HHH-------cCC-----------CeEEEECC
Confidence 5432236899999999999999853 689999999999999999999 445 232 78999999
Q ss_pred CCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCch
Q 002941 515 SYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (863)
Q Consensus 515 sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 594 (863)
+|||++.+++++++...+.+.+ .+.. ..+..++++..++ ...
T Consensus 131 ~yhg~~~~~~~~~~~~~~~~~~------------~~~~----~~~~~~~~~~~~~-------------------~~~--- 172 (413)
T cd00610 131 AYHGRTLGALSLTGSKKYRGGF------------GPLL----PGVLHVPYPYRYR-------------------PPA--- 172 (413)
T ss_pred CcCCccHHHHHhcCCccccccC------------CCCC----CCcEEeCCCcccc-------------------chh---
Confidence 9999999999887654333211 0000 1122233321110 000
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch
Q 002941 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (863)
Q Consensus 595 ~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a 674 (863)
. .....+.+++.+++ +++++++|++||+ ++++|.++++++|+++|+++|++||++||+|||++||||+|.+++
T Consensus 173 ~-~~~d~~~l~~~l~~-----~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~ 245 (413)
T cd00610 173 E-LADDLEALEEALEE-----HPEEVAAVIVEPI-QGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFA 245 (413)
T ss_pred h-HHHHHHHHHHHHhc-----CCCCEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhh
Confidence 0 11123556666642 3468999999997 999999999999999999999999999999999999999999989
Q ss_pred hhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 675 ~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
++++++.||++++||++++| +|+|++++++++++.+.. ..+.+.+|++++|++++++.++|++++++++.+++.+
T Consensus 246 ~~~~~~~~d~~t~sK~l~~g-~~~g~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~ 320 (413)
T cd00610 246 FEHFGVEPDIVTLGKGLGGG-LPLGAVLGREEIMDAFPA----GPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAE 320 (413)
T ss_pred HhhcCCCCCeEEEcccccCc-cccEEEEEcHHHHHhhcc----CCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999999999 899999999999998721 1245778999999999999999999987777888888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEEecCCC
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPC 833 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~~ppl~ 833 (863)
+++++++.+. ++...++.+..+++.|.++.+.+.++.............+++.|+++||++.|. ++.+|+.|++.
T Consensus 321 ~~~~l~~~l~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~lR~~~~~~ 396 (413)
T cd00610 321 LGEYLRERLR----ELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSGGNVIRLLPPLI 396 (413)
T ss_pred HHHHHHHHHH----HHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecCCCEEEEECCCc
Confidence 8877777553 333445777888999999999997642111112235677899999999999987 48999999999
Q ss_pred CcHHHHHHHHHHHHHHH
Q 002941 834 SSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 834 ~t~eeid~~v~~L~~~l 850 (863)
+|+++|++++++|++++
T Consensus 397 ~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 397 ITEEEIDEGLDALDEAL 413 (413)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999998764
No 84
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=100.00 E-value=6.7e-49 Score=446.01 Aligned_cols=373 Identities=26% Similarity=0.368 Sum_probs=305.5
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ ++|+++||.||+ +|+|+.+|+|++++|| +||+|.+|+.+|+++..+.. ..+.++...+|+++|++.
T Consensus 22 ~~~~~~--~~G~~~~d~dg~----~~iD~~~g~~~~~lG~-~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~ 93 (396)
T PRK02627 22 PIAFVR--GEGARLWDDDGK----EYLDFLAGIAVNNLGH-CHPKLVEAIQEQAAKLIHTS-NLYYIEPQEELAEKLVEL 93 (396)
T ss_pred CceEEe--eeeCEEEeCCCC----EEEECCccHHhccCCC-CCHHHHHHHHHHHhhccccc-cccCCHHHHHHHHHHHhh
Confidence 456666 788999999999 9999999999999999 89999999999999876543 346789999999999998
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
.+ .++++|++||+||++.|+|++ +.+..+.+. .+.+|++++++|||.+.+++++++...++..
T Consensus 94 ~~---~~~v~~~~gg~eA~~~al~~a-~~~~~~~~~-------------~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 156 (396)
T PRK02627 94 SG---MDKVFFCNSGAEANEAAIKLA-RKYGHKKGI-------------EKPEIITAENSFHGRTLATLSATGQPKYQEG 156 (396)
T ss_pred cC---CCEEEECCCcHHHHHHHHHHH-HHHhcccCC-------------CCCeEEEECCCcCcccHHHHHhcCCcccccc
Confidence 65 589999999999999999999 556322221 1268999999999999999998875543321
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+ .+. + .++..+++ +| .+.+++.+
T Consensus 157 ~--------~~~---~-----~~~~~~~~--------------------------~d--------~~~l~~~i------- 179 (396)
T PRK02627 157 F--------EPL---V-----EGFIYVPF--------------------------ND--------IEALKAAI------- 179 (396)
T ss_pred C--------CCC---C-----CCceEeCC--------------------------CC--------HHHHHHhc-------
Confidence 0 000 0 11111111 11 13344444
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
.+++++|++||+ ++++|+.+++++|+++|+++|++||++||+||+++||||+|++++++.+++.||++||||++++|
T Consensus 180 -~~~~~~vii~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~t~sK~~~~G- 256 (396)
T PRK02627 180 -TDKTAAVMLEPI-QGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDIMTLAKGLGGG- 256 (396)
T ss_pred -CCCeEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCEEEEcchhhCC-
Confidence 247899999998 99999999999999999999999999999999999999999988888999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+.. ..+..||++||++|+++.++|+.++++++.++++++++++++.+ .++..++|
T Consensus 257 ~rig~~~~~~~~~~~~~~------~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~ 326 (396)
T PRK02627 257 VPIGAVLAKEKVADVFTP------GDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKL----RELLEKYP 326 (396)
T ss_pred cccEEEEEcHHHHhccCC------CCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH----HHHHHhCC
Confidence 899999999999988753 23678999999999999999999877777788887777777654 44555677
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.+..++|.|+++.+++.. ...+++..|+++||++.|.+ +.+|+.|++.++++++++++++|+++++++
T Consensus 327 ~~~~~~~~g~~~~i~~~~----------~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~~ 395 (396)
T PRK02627 327 GIKEVRGLGLMIGIELDR----------PAAEIVKKALEKGLLINVTGDNVLRLLPPLIISKEEIDEAVDRLEEVLKEL 395 (396)
T ss_pred CeeeeccCcEEEEEEecC----------cHHHHHHHHHHCCeEEeecCCCEEEEECCcccCHHHHHHHHHHHHHHHHhh
Confidence 788899999999999832 15678999999999999876 789999999999999999999999988653
No 85
>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-43 Score=372.40 Aligned_cols=399 Identities=18% Similarity=0.168 Sum_probs=301.6
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHH-HHHhcc-ccc-CCCC-CChHHHHHHHHHHhhcCCC
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGY-TAARFG-HVM-FPEN-VYEPALECAELLLQGVGKG 459 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~-q~~~~~-~~~-~~~~-~~~~~~eLae~L~~~~p~~ 459 (863)
.-|.|++|+||| .+||..+.+.++++|| |||.++.++.. |+.+.. .-. ...+ ..+.+..|.+-|....|++
T Consensus 65 S~GNYlvDvDGN----~lLDvYsQIsSvplGY-n~P~LvK~a~~p~~~~~lvnRPALg~fP~kd~~~~l~~~ll~~APKG 139 (484)
T KOG1405|consen 65 SIGNYLVDVDGN----RLLDVYSQISSVPLGY-NNPALVKAAQQPQNATMLVNRPALGNFPPKDFAEKLRQSLLSIAPKG 139 (484)
T ss_pred hcCceEEecCCC----eeehhhhhhcccccCC-CCHHHHHHhcChHHHHHHhccccccCCChhhHHHHHHHHHHhhCcch
Confidence 467899999999 9999999999999999 89999999874 433321 111 0111 3455666666677788887
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHH-HhhccccccccCCC---------ccccccccEEEEecCCCccCccccceecCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKF-SFDHEVLVDFLGKD---------TTEKCIELKVLALKGSYHGDTLGAMEAQAP 529 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~-~~~~G~~tgr~~~~---------~~~~~~r~~II~~~~sYHG~t~gals~t~~ 529 (863)
.+.|++.-+||.|||+|+|.|+-.| .+.+|.. | .++ .++.++.-.|++|+|+|||++++++|.|..
T Consensus 140 -~~~v~tm~cGs~aNEnA~K~afiwy~~k~rg~~-~--~s~~e~eScm~n~aPg~P~lsvlsF~gaFHGR~~g~lstT~S 215 (484)
T KOG1405|consen 140 -QKQVITMLCGSCANENAYKTAFIWYRAKERGQA-G--FSAEELESCMINQAPGAPDLSVLSFKGAFHGRTFGSLSTTHS 215 (484)
T ss_pred -HHHHHHHhccccccHHHHHHHHHHHHhhcCCCC-C--CCHHHHHHHHhcCCCCCCceeeeeeccccccccccccccccC
Confidence 7899999999999999999996433 1333321 1 111 033446788999999999999999999876
Q ss_pred CCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcc-cCchhHHHHHHHHHHHHH
Q 002941 530 SPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE-RDSSDLASIYSSYISQNL 608 (863)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~le~~l 608 (863)
...++.. -+-|++|-. ++|.. +.++++. .....-.+.|++.+|+.+
T Consensus 216 KpIHKld--------iPaFdWPiA---------~fP~y----------------kYPLdenv~~N~ked~~Cl~~Ve~li 262 (484)
T KOG1405|consen 216 KPIHKLD--------IPAFDWPIA---------PFPRY----------------KYPLDENVAENKKEDQGCLAEVEDLI 262 (484)
T ss_pred ccccccC--------CCCCCCCCC---------CCccc----------------cCChhhhhhhhhhhhhhHHHHHHHHH
Confidence 5544321 122333322 22311 1112211 001122345778888888
Q ss_pred hcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC--CCcEEE
Q 002941 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC--VPDIAC 686 (863)
Q Consensus 609 ~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv--~PDivt 686 (863)
... ..+...|||+|+||| |++||....+++|++.||++|+|||+.+|+||||||-|-||++|++|||++ .||+||
T Consensus 263 ~~~--~~k~~pVaaiIvEPI-QsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~vT 339 (484)
T KOG1405|consen 263 VKY--RKKKKPVAAIIVEPI-QSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVT 339 (484)
T ss_pred HHH--hhcCCCeEEEEeech-hccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCcccee
Confidence 653 123357999999997 999999999999999999999999999999999999999999999999998 589999
Q ss_pred ecccc-CCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHH
Q 002941 687 YGKLL-TGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDL 765 (863)
Q Consensus 687 ~sKgL-ggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~ 765 (863)
|||-+ +|||+ -.+ .|+... ++.+..||-|+|.-..-..+++++++++++.+++...++.|..
T Consensus 340 FSKK~q~gGff------h~~----~frpn~---pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l~~---- 402 (484)
T KOG1405|consen 340 FSKKFQTGGFF------HDE----EFRPNE---PYRIFNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALLK---- 402 (484)
T ss_pred hhhhhhcCccc------cCc----ccCCCc---hHHHhhhhcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----
Confidence 99977 57762 122 233221 2346789999999999999999999998888888777777665
Q ss_pred HHHHHHhcCCC-eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHH
Q 002941 766 ELIQQISSHRT-VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 766 ~l~~~~~~~p~-v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v 843 (863)
+|.++.+++|. +..+||+|.|+++++.... ....+...++-+|+-++.+| ..+||.|.++..+.+.+-++
T Consensus 403 gL~~Lq~~~p~~~~~~RGrGTF~a~d~ps~~--------~Rdk~i~~~~~nGv~~GGCg~~siRfRPsLvf~~~Ha~i~l 474 (484)
T KOG1405|consen 403 GLLELQAKYPGKINNLRGRGTFIAWDCPSGS--------IRDKLILIARLNGVNLGGCGDKSIRFRPSLVFRKHHADIFL 474 (484)
T ss_pred HHHHHHHhCchhhhcccccceEEEEeCCChH--------HHHHHHHHHHHcCceecccccceeeeccceeehhhhHHHHH
Confidence 55778889985 7889999999999998764 56788999999999999887 78999999999999999999
Q ss_pred HHHHHHHHH
Q 002941 844 LKLYQRLEE 852 (863)
Q Consensus 844 ~~L~~~l~~ 852 (863)
+++++.+..
T Consensus 475 ~~~~k~l~~ 483 (484)
T KOG1405|consen 475 DIFDKILAG 483 (484)
T ss_pred HHHHHHhcc
Confidence 999998764
No 86
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=100.00 E-value=2.2e-40 Score=373.88 Aligned_cols=369 Identities=26% Similarity=0.383 Sum_probs=292.1
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|+++++ ++|.++||.||+ +|+|+++|+|++++|| +||.|.+|+.++++++.+.. ..+.++...+|+++|++.
T Consensus 10 ~~~~~~--~~g~~~~~~~g~----~~id~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~ 81 (379)
T TIGR00707 10 PVKIVR--GKGAYVYDVNGK----EYLDFVAGIAVNSLGH-AHPKLVEALKEQLEKLVHVS-NLYYTEPQEELAEKLVEH 81 (379)
T ss_pred CccEEE--eecCEEEeCCCC----EEEEcCcchhhccCCC-CCHHHHHHHHHHHhhccccc-cccCCHHHHHHHHHHHhh
Confidence 556776 788999999999 9999999999999999 89999999999999876543 235688899999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
++ .+++++++||++|++.|++++ +.+....|. + +.+|++++++|||.+..+...++...+...
T Consensus 82 ~g---~~~~~~~~sg~~a~~~a~~~~-~~~~~~~~~--~-----------~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~ 144 (379)
T TIGR00707 82 SG---ADRVFFCNSGAEANEAALKLA-RKYTGDKGK--E-----------KKKIIAFENSFHGRTMGALSATGQPKYQKG 144 (379)
T ss_pred CC---CCEEEEeCCcHHHHHHHHHHH-HHHhhccCC--C-----------CCeEEEECCCcCCccHHHHHhcCChhhhcc
Confidence 87 469999999999999999988 555321210 1 268999999999999988877664433210
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+ .+.. + ....+++ +| .+.+++.+.
T Consensus 145 ----~----~~~~--~------~~~~~~~--------------------------~d--------~~~l~~~~~------ 168 (379)
T TIGR00707 145 ----F----EPLV--P------GFSYAPY--------------------------ND--------IESLKKAID------ 168 (379)
T ss_pred ----C----CCCC--C------CceeeCC--------------------------CC--------HHHHHHHhh------
Confidence 0 0000 0 0000000 12 234445443
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++.+|++||+ ++++|+.+++.+++++|.++|++||+++|+||+++|||++|.++.++.+++.||++||||++++|
T Consensus 169 --~~~~~v~~~p~-~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~t~sK~~~~G- 244 (379)
T TIGR00707 169 --DETAAVIVEPI-QGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIITLAKGLGGG- 244 (379)
T ss_pred --hCeeEEEEEcc-ccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEEEEcccccCC-
Confidence 25789999998 99999888899999999999999999999999999999999877777789999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+... .+..+|+++|++++++.++|+.++++++.+++.++.+++++.+. +.....+
T Consensus 245 ~riG~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~ 314 (379)
T TIGR00707 245 VPIGATLAKEEVAEAFTPG------DHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLE----ELGKNYP 314 (379)
T ss_pred cccEEEEEcHHHHhhhcCC------CCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHhhCC
Confidence 8999999999999988642 35678889999999999999988766677778777777776554 3333333
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
+..+++.|.++.+++.++ ...+.+.|.++||++.|.+ +.+|++|++.++++++++++++|++++
T Consensus 315 -~~~~~~~g~~~~~~~~~~----------~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 379 (379)
T TIGR00707 315 -NKEVRGKGLMLGIELEAP----------CKDIVKKALEKGLLVNCAGPKVLRFLPPLIITKEEIDEAVSALEEAI 379 (379)
T ss_pred -CCccccCceEEEEEecCc----------HHHHHHHHHHCCcEEeeCCCCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 245667899999987642 3578889999999999976 799999999999999999999998753
No 87
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=100.00 E-value=4.5e-38 Score=324.33 Aligned_cols=196 Identities=31% Similarity=0.414 Sum_probs=168.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCC---chhHHHhhccccccccCCCcccccc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDS---DSRFLFTKLPSLSLRRNFPSSLILS 113 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (863)
|+.|||||||||||||++|++|+++|+ .+|++|+++||||||+.... |..++++ +.+
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~-----~~g~~~~~~KPVqsG~~~~~~~~D~~~l~~-~~~-------------- 61 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALK-----QQGYSVAGYKPVQTGSEETAENSDALVLQR-LSG-------------- 61 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHH-----hCCCeeEEECceeeCCCCCCCCchHHHHHH-hcC--------------
Confidence 578999999999999999999999999 99999999999999987653 4433332 223
Q ss_pred chhhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCC
Q 002941 114 NSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVG 193 (863)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~ 193 (863)
.+.+|+ .++||.|++|.|||+|++.+ |..++
T Consensus 62 -----------------~~~~~~-------------------------------~~~py~f~~P~sPhlAa~~e-g~~I~ 92 (223)
T COG0132 62 -----------------LDLSYE-------------------------------LINPYRFKEPLSPHLAAELE-GRTID 92 (223)
T ss_pred -----------------CCcccc-------------------------------cccceecCCCCCcHHHHhhc-CCccc
Confidence 233332 37899999999999999999 99999
Q ss_pred hhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHH
Q 002941 194 DSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273 (863)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~ 273 (863)
.+++...+.++.+++ |++|||||||+++|+++..+.+|+++.+++|||||++.+||+|||+++++++
T Consensus 93 ~~~l~~~l~~l~~~~-------------d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~LGtINHtlLt~ea 159 (223)
T COG0132 93 LEKLSQGLRQLLKKY-------------DLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLGTINHTLLTVEA 159 (223)
T ss_pred HHHHHHHHHhhhccc-------------CEEEEeCCCceeeecCCcccHHHHHHHcCCCEEEEecCCccHHHHHHHHHHH
Confidence 999999999888876 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcEEEEEEcCCCCCC------HHHHHHhhcCCCCeee-cCCCCCC
Q 002941 274 LKLRGYDVVAVVFEDHGLVN------EVPLMSYLRNRVPVLV-LPPLPQD 316 (863)
Q Consensus 274 ~~~~~~~v~gvi~n~~~~~~------~~~~~~~~~~~~pvl~-~p~~~~~ 316 (863)
++++|++++|+|+|+..... ...++++ .+.|++| +|+.++.
T Consensus 160 l~~~gl~l~G~I~n~~~~~~~~~~~~~~~l~~~--~~~p~~g~~p~~~~~ 207 (223)
T COG0132 160 LRARGLPLAGWVANGINPELDHYAEINATLLKR--IGAPLLGIIPYLPES 207 (223)
T ss_pred HHHCCCCEEEEEEccCCCchhHHHHHHHHHHHh--cCCCccccccCCccc
Confidence 99999999999999873321 1123333 5899999 9997764
No 88
>PRK07505 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=322.51 Aligned_cols=345 Identities=12% Similarity=0.032 Sum_probs=242.7
Q ss_pred EEEeecccceEEEEcCCCcccceEEeeecccccccCC-CCCcHHHHHHHHHHHHhccc--c-cCC-CCCChHHHHHHHHH
Q 002941 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPD-ATLQIELARDMGYTAARFGH--V-MFP-ENVYEPALECAELL 452 (863)
Q Consensus 378 ~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lG-h~~~p~V~~Ai~~q~~~~~~--~-~~~-~~~~~~~~eLae~L 452 (863)
.+++ |+|+++||.||+ +|||+.+ +.++| | +||+|++|+.+|++++++ . ... ...++...+|+++|
T Consensus 31 ~~~~--~~G~~~~d~~g~----~~ld~~s---~~~lgl~-~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~l 100 (402)
T PRK07505 31 TVGE--REGILITLADGH----TFVNFVS---CSYLGLD-THPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEAL 100 (402)
T ss_pred eeec--cCCccEEecCCc----eEEEeec---CCccCCC-CCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHH
Confidence 4444 899999999999 9999998 57888 7 899999999999998752 1 111 24578899999999
Q ss_pred HhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCC
Q 002941 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (863)
Q Consensus 453 ~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~ 532 (863)
++++| . ++++++||++|++.|+|++.+ +. .+ .+ +.+||+++++|||+..+... .
T Consensus 101 a~~~~---~-~~~~~~sG~~a~~~ai~~~~~-~~-~~---~~-----------~~~vi~~~~~~H~s~~~~~~------~ 154 (402)
T PRK07505 101 SELFG---A-SVLTFTSCSAAHLGILPLLAS-GH-LT---GG-----------VPPHMVFDKNAHASLNILKG------I 154 (402)
T ss_pred HHHhC---C-CEEEECChHHHHHHHHHHHHh-cc-cC---CC-----------CCCEEEEchhhhHhHHhhhh------h
Confidence 99987 3 788888999999999999832 11 01 12 26799999999994321110 0
Q ss_pred CCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 002941 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (863)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i 612 (863)
. .. .+ .+.+++++ | .+.+++.+.
T Consensus 155 ~--------~~------~~------~v~~~~~~--------------------------d--------~~~l~~~~~--- 177 (402)
T PRK07505 155 C--------AD------ET------EVETIDHN--------------------------D--------LDALEDICK--- 177 (402)
T ss_pred h--------hc------CC------eEEEeCCC--------------------------C--------HHHHHHHHh---
Confidence 0 00 00 11122221 1 134455553
Q ss_pred CCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccc--ccccccCCcchhhhcCC-CCcEE----
Q 002941 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF--TGFWRLGVETTADLLGC-VPDIA---- 685 (863)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~--TGfGRtG~~~a~e~~gv-~PDiv---- 685 (863)
++..+++|+||+ ++.|++ .+ +++|+++|++||++||+||+| +||||+|.+++.+++++ .||.+
T Consensus 178 ----~~~~~~vl~~p~-~~~G~~-~~----~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~ 247 (402)
T PRK07505 178 ----TNKTVAYVADGV-YSMGGI-AP----VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAA 247 (402)
T ss_pred ----cCCCEEEEEecc-cccCCc-CC----HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEE
Confidence 235789999997 877654 44 799999999999999999998 78999999888899998 78854
Q ss_pred EeccccCCCCCCceeee-ccHHHHHhhhcCCccceeecccCCCcc--HHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 002941 686 CYGKLLTGGVIPLAATL-ATNAVFDSFVGDSKLKALLHGHSYSAH--ALGCAAAAKSIKWFKDPQTNHNIIPERRILREL 762 (863)
Q Consensus 686 t~sKgLggG~~Pigav~-~~~~i~~~l~~~~~~~~~~~~~T~~~~--pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~ 762 (863)
++||+++++ .|+++ .++++++.+.. +.+.+||+++ +++|++++++++++.++.+.+ ..+++.+.
T Consensus 248 s~sK~~~~~---Gg~~~~~~~~~~~~~~~------~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~----~~~~l~~~ 314 (402)
T PRK07505 248 SLGKAFGAS---GGVIMLGDAEQIELILR------YAGPLAFSQSLNVAALGAILASAEIHLSEELDQ----LQQKLQNN 314 (402)
T ss_pred echhhhhcc---CeEEEeCCHHHHHHHHH------hCCCceeCCCCCHHHHHHHHHHHHHHhccCcHH----HHHHHHHH
Confidence 799998753 24455 47888888864 2356677665 689999999999776543322 22333332
Q ss_pred HHHHHHHHHhcCCCeeEecccceEEE-EEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------C-CEEEEecCCC
Q 002941 763 WDLELIQQISSHRTVQRVVALGTLCA-IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------G-NVIYLMCGPC 833 (863)
Q Consensus 763 l~~~l~~~~~~~p~v~~vrg~Gl~~~-iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g-~~lr~~ppl~ 833 (863)
+. .+.... ...++|.|+++. +.+.+. ..+..+.+.|+++||++++. + +.+||+|++.
T Consensus 315 ~~-~~~~~~-----~~~~~g~~~~i~~~~~~~~--------~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~~ 380 (402)
T PRK07505 315 IA-LFDSLI-----PTEQSGSFLPIRLIYIGDE--------DTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRAS 380 (402)
T ss_pred HH-HHHHHH-----HhcCCCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCcc
Confidence 21 111111 123467776654 333211 13567899999999999864 2 6899999999
Q ss_pred CcHHHHHHHHHHHHHHHHH
Q 002941 834 SSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 834 ~t~eeid~~v~~L~~~l~~ 852 (863)
+|+||+++++++|++++++
T Consensus 381 ~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 381 HTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999999988754
No 89
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=100.00 E-value=1.5e-34 Score=298.30 Aligned_cols=196 Identities=35% Similarity=0.468 Sum_probs=161.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccCCCccccccchhh
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSIL 117 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (863)
++|||+||+|+||||+||+||+++|+ ++|.+|+|||||++|...++|..++.+.+ +++
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~-----~~g~~v~~~KPi~~~~~~d~d~~~~~~~~-~~~---------------- 58 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALR-----RRGIKVGYFKPIQTGPEDDEDAELIRELF-GLS---------------- 58 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHH-----HTTSEEEEEEEEEESCCCSSHHHHHHHHC-CTC----------------
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH-----hCCCceEEEeeeEecCCCCchHHHHHHHh-CCC----------------
Confidence 47999999999999999999999999 99999999999999998888888776543 330
Q ss_pred hhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCChhHH
Q 002941 118 FSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKV 197 (863)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~~~ 197 (863)
.+....++|.|++|.+|+++++.+ +..+..+++
T Consensus 59 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i 91 (199)
T PF13500_consen 59 ----------------------------------------------EPPDDPSPYTFDEPASPHLAAELE-GVDIDLERI 91 (199)
T ss_dssp ----------------------------------------------CCHHHHECEEESSSS-HHHHHHHH-T----HHHH
T ss_pred ----------------------------------------------cccccccccccCcccCHHHHhhcc-CCcccHHHH
Confidence 112336899999999999999999 877887777
Q ss_pred HHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhC
Q 002941 198 IETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLR 277 (863)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~ 277 (863)
+ ++++.+++ |++||||+||+++|+..+.+|+|||+.+++|||||++.++|++|++++++++++.+
T Consensus 92 ~--~~~l~~~~-------------D~vlVEGag~~~~~~~~~~~n~dia~~L~a~vIlV~~~~~g~i~~~l~~~~~~~~~ 156 (199)
T PF13500_consen 92 I--YKELAEEY-------------DVVLVEGAGGLMVPIFSGDLNADIAKALGAPVILVASGRLGTINHTLLTIEALKQR 156 (199)
T ss_dssp H--HHHCHTTT-------------CEEEEEESSSTTSECCTTEEHHHHHHHHT-EEEEEEESSTTHHHHHHHHHHHHHCT
T ss_pred H--HHHHhhcC-------------CEEEEeCCcccCcccccChHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHHHHhc
Confidence 7 66666665 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEcCC-CCCCHHHHHHhhcCCCCeee-cCCCCCCCch
Q 002941 278 GYDVVAVVFEDH-GLVNEVPLMSYLRNRVPVLV-LPPLPQDSSN 319 (863)
Q Consensus 278 ~~~v~gvi~n~~-~~~~~~~~~~~~~~~~pvl~-~p~~~~~~~~ 319 (863)
|++++|||+|++ ..++.+.++++ .++||+| ||+.+.++++
T Consensus 157 g~~v~GvI~N~~~~~~~~~~l~~~--~~i~vlg~iP~~~~L~~p 198 (199)
T PF13500_consen 157 GIRVLGVILNRVPEPENLEALREK--SGIPVLGVIPEDPDLSAP 198 (199)
T ss_dssp TS-EEEEEEEECTCCHHHHHHHHH--HCCEECE---SSTT----
T ss_pred CCCEEEEEEECCCCHHHHHHHHHh--CCCCEEEECCCCcccccC
Confidence 999999999997 44577778877 6899999 9999999765
No 90
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.98 E-value=1.2e-30 Score=298.03 Aligned_cols=331 Identities=14% Similarity=0.089 Sum_probs=243.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE 475 (863)
++++|+| |.+||..+||+|++|+.+|++++++.. ...+.++...+|+++|++++|. ++++|++||++||+
T Consensus 46 ~~~~~~s---n~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~---~~~~~~~SG~~An~ 119 (406)
T PRK13393 46 EVTVWCS---NDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGK---EAALLFTSGYVSNW 119 (406)
T ss_pred cEEEeec---ccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCC---CcEEEeCCcHHHHH
Confidence 8999998 899999889999999999999987642 1223467889999999999983 68999999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.|++...+.+ +.++|.++..|||++..++..++...
T Consensus 120 ~ai~~l~~~~--------------------~g~~I~~~~~~H~s~~~~~~~~g~~~------------------------ 155 (406)
T PRK13393 120 AALSTLGSRL--------------------PGCVILSDELNHASMIEGIRHSRAEK------------------------ 155 (406)
T ss_pred HHHHHhhcCC--------------------CCCEEEEccchhHHHHHHHHHcCCeE------------------------
Confidence 9999541211 13589999999999887775532110
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
..++. +| .+.+++.+.. ..++++++|++|++ ++++|.
T Consensus 156 ----~~~~~--------------------------~d--------~~~l~~~l~~----~~~~~~~~v~~~~v-~~~~G~ 192 (406)
T PRK13393 156 ----RIFRH--------------------------ND--------PADLERKLSD----LDPHRPKLVAFESV-YSMDGD 192 (406)
T ss_pred ----EEeCC--------------------------CC--------HHHHHHHHHh----ccCCCCEEEEEcCC-CCCCCc
Confidence 00010 11 1223444432 12345789999998 999998
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccc-cc-cccCCcchhhhcCCC--CcEE--EeccccC--CCCCCceeeeccHHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGCV--PDIA--CYGKLLT--GGVIPLAATLATNAV 707 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~T-Gf-GRtG~~~a~e~~gv~--PDiv--t~sKgLg--gG~~Pigav~~~~~i 707 (863)
+.+ +++|+++|++||++||+||+|+ |+ |++|.++ ++++++. +|++ ||||+++ || ++++++++
T Consensus 193 ~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~-~~~~~~~~~~~i~~~tlsKa~g~~GG-----~~~~~~~~ 262 (406)
T PRK13393 193 IAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGI-AEREGLADRLTIIEGTLAKAFGVMGG-----YITGSAAL 262 (406)
T ss_pred hhC----HHHHHHHHHHcCCEEEEECCccccccCCCCCch-hhhcCCCCCCeEEEEeCchhhcccCc-----eeeCCHHH
Confidence 887 9999999999999999999997 66 8888765 4777775 6777 9999997 55 47889999
Q ss_pred HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChh-hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceE
Q 002941 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ-TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL 786 (863)
Q Consensus 708 ~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~-l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~ 786 (863)
++.+..... .+.+|++++|++++++.++|+.+++.. ...++.++.+++.+.| .+. ..+ .+++.|.|
T Consensus 263 ~~~l~~~~~----~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L----~~~--g~~---~~~~~~~i 329 (406)
T PRK13393 263 CDFIRSFAS----GFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARL----DKA--GIP---HLPNPSHI 329 (406)
T ss_pred HHHHHHhCc----CceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH----HHc--CCC---cCCCCCCe
Confidence 988764221 123577889999999999999886542 2234444454554433 221 222 24678889
Q ss_pred EEEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-------C-CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 787 CAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 787 ~~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-------g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+.+.+.+. ..+..+.+.|++ +||++++. | +.+|++|++.+|++|+|+++++|+++++++.
T Consensus 330 ~~v~~~~~--------~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~~~ 398 (406)
T PRK13393 330 VPVMVGDP--------VLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWARLG 398 (406)
T ss_pred EEEEeCCH--------HHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhcC
Confidence 88866432 135678888987 59999752 3 7899999999999999999999999887653
No 91
>PLN02822 serine palmitoyltransferase
Probab=99.98 E-value=3e-30 Score=299.85 Aligned_cols=355 Identities=13% Similarity=0.094 Sum_probs=250.4
Q ss_pred EEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccC----CCCCChHHHHHHHHHH
Q 002941 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLL 453 (863)
Q Consensus 378 ~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~----~~~~~~~~~eLae~L~ 453 (863)
++++ ++|.+++ .+|+ +|+|+.++. ++|..+||+|++|+.+++++++.... ..++++.+.+|+++|+
T Consensus 95 ~~~~--~~G~~i~-~~G~----~~id~~s~~---~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La 164 (481)
T PLN02822 95 VLES--AAGPHTI-INGK----DVVNFASAN---YLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIA 164 (481)
T ss_pred ceec--CCCCeEE-ECCc----eEEEeECCC---cCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHH
Confidence 5555 6788999 7999 999999854 44544689999999999999876421 2246788999999999
Q ss_pred hhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCC
Q 002941 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (863)
Q Consensus 454 ~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~ 533 (863)
++++.+ +.++|++ |..++..|++.. ++| .++|.++..||+++..++.+++...
T Consensus 165 ~~~~~~--~~i~~s~-G~~a~~sai~a~-----------~~~-----------gd~Ii~d~~~H~s~~~~~~ls~~~~-- 217 (481)
T PLN02822 165 KFLGTP--DSILYSY-GLSTIFSVIPAF-----------CKK-----------GDIIVADEGVHWGIQNGLYLSRSTI-- 217 (481)
T ss_pred HHhCCC--CEEEECC-HHHHHHHHHHHh-----------CCC-----------CCEEEEeCCccHHHHHHHHHcCCeE--
Confidence 999853 5677775 555788877743 233 5678899999999877766653110
Q ss_pred CCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 002941 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (863)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~ 613 (863)
..+++ +|. +.++..++++-.
T Consensus 218 --------------------------~~~~~--------------------------nd~--------~~l~~~l~~~~~ 237 (481)
T PLN02822 218 --------------------------VYFKH--------------------------NDM--------ESLRNTLEKLTA 237 (481)
T ss_pred --------------------------EEECC--------------------------CCH--------HHHHHHHHHHhh
Confidence 00110 111 112222221100
Q ss_pred CC-CCCcE-EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc--cccccCCcchhhhcCC---CCcEEE
Q 002941 614 LK-VSGCI-GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT--GFWRLGVETTADLLGC---VPDIAC 686 (863)
Q Consensus 614 ~~-~~~~i-AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T--GfGRtG~~~a~e~~gv---~PDivt 686 (863)
.. ...++ ++||+|++ +++.|.+.+ +++|+++|++||++||+||+|+ .+|++|.+ .++++|+ .|||++
T Consensus 238 ~~~~~~~~~~~Ivve~i-~~~~G~i~~----L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G-~~e~~~v~~~~~dii~ 311 (481)
T PLN02822 238 ENKRKKKLRRYIVVEAI-YQNSGQIAP----LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRG-LSEHFGVPIEKIDIIT 311 (481)
T ss_pred hhcccCCCcEEEEEecC-CCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCC-hHHHcCCCCCCCeEEE
Confidence 00 01233 89999998 999998887 8999999999999999999997 45667765 6799998 789987
Q ss_pred --eccccC--CCCCCceeeeccHHHHHhhhcCCccceeecccCCCcc--HHHHHHHHHHHHHhcC-hhhHHhHHHHHHHH
Q 002941 687 --YGKLLT--GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAH--ALGCAAAAKSIKWFKD-PQTNHNIIPERRIL 759 (863)
Q Consensus 687 --~sKgLg--gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~--pla~AAalAaL~~l~~-~~l~~~l~~~~~~l 759 (863)
|||+++ || ++++++++++.+... .+++||+++ |..++|++++|+.+++ +++.++++++++++
T Consensus 312 ~s~sKalg~~GG-----~i~g~~~ii~~~~~~------~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l 380 (481)
T PLN02822 312 AAMGHALATEGG-----FCTGSARVVDHQRLS------SSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALL 380 (481)
T ss_pred ecchhhhhhCCe-----EEEcCHHHHHHHHhc------CCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 789997 66 488999999987642 467788877 8899999999998865 56777787777777
Q ss_pred HHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec----------CCEEEE
Q 002941 760 RELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL----------GNVIYL 828 (863)
Q Consensus 760 ~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~----------g~~lr~ 828 (863)
++.|.+ . ...+. ...+.+.++.+.+.+..............+++.|+ ++||++.+. ...+|+
T Consensus 381 ~~~L~~----~-~g~~~--~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi 453 (481)
T PLN02822 381 HKGLSD----I-PGLSI--GSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRL 453 (481)
T ss_pred HHHHHh----c-CCccc--CCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEE
Confidence 764422 1 11111 11245667777775321000011234567899998 889999864 135898
Q ss_pred ecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 829 MCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 829 ~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
..+..+|++||++++++|++++.++
T Consensus 454 ~is~~~t~edI~~~~~~l~~~~~~~ 478 (481)
T PLN02822 454 FVSAGHTESDILKASESLKRVAASV 478 (481)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999887664
No 92
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=99.97 E-value=2.5e-30 Score=273.10 Aligned_cols=208 Identities=21% Similarity=0.187 Sum_probs=161.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccCCCccccccchh
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (863)
|++|||+||+|++|||+||++|+++|+ ++|++|+|||||++|+....+.
T Consensus 2 ~~~ifIt~t~t~vGKT~vt~~L~~~l~-----~~g~~v~~~KPi~~g~~~~~~~-------------------------- 50 (231)
T PRK12374 2 LKRFFITGTDTSVGKTVVSRALLQALA-----SQGKTVAGYKPVAKGSKETPEG-------------------------- 50 (231)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEECccccCCccCCCC--------------------------
Confidence 346999999999999999999999999 9999999999999996432110
Q ss_pred hhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCChhH
Q 002941 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSK 196 (863)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~~ 196 (863)
+.++|+..++.....+.++ ...+||.++.+ .+++.+ +..++.++
T Consensus 51 ~~~~D~~~l~~~~~~~~~~-------------------------------~~~~p~~~~~~----~a~~~~-~~~i~~~~ 94 (231)
T PRK12374 51 LRNKDALVLQSVSSIELPY-------------------------------EAVNPIALSEE----ESSVAH-SCPINYTL 94 (231)
T ss_pred CchHHHHHHHHhcCCCCCH-------------------------------HhccCeecCCC----cChHHc-CCcCCHHH
Confidence 0012222222222222222 23567777655 345566 66778899
Q ss_pred HHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHh
Q 002941 197 VIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL 276 (863)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~ 276 (863)
|.+.++++.+++ |++|||||||+++|++......|++..+++|+|||++.++|++||++++++.++.
T Consensus 95 i~~~~~~l~~~~-------------D~VlVEGaGgl~~p~~~~~~~~d~~~~~~~pvilV~~~~lg~in~~lLt~~~l~~ 161 (231)
T PRK12374 95 MSNGLANLSEKV-------------DHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAIAN 161 (231)
T ss_pred HHHHHHHHHhhC-------------CEEEEECCCCcceeccCcccHHHHHHHhCCCEEEEECCCcChHHHHHHHHHHHHh
Confidence 999998877766 9999999999999998888999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEcCCCCCC------HHHHHHhhcCCCCeee-cCCCCCCCchhhhhhhh
Q 002941 277 RGYDVVAVVFEDHGLVN------EVPLMSYLRNRVPVLV-LPPLPQDSSNDLMEWFD 326 (863)
Q Consensus 277 ~~~~v~gvi~n~~~~~~------~~~~~~~~~~~~pvl~-~p~~~~~~~~~~~~~l~ 326 (863)
+|++++|+|+|++.... ...+++. .++|++| +|+.+.+...++.+|++
T Consensus 162 ~~~~~~gvV~N~~~~~~~~~~~~~~~l~~~--~~~~~lg~iP~~~~~~~~~~~~~l~ 216 (231)
T PRK12374 162 DGLPLIGWVANRINPGLAHYAEIIDVLGKK--LPAPLIGELPYLPRAEQRELGQYID 216 (231)
T ss_pred CCCcEEEEEEeCccCchhhhhhHHHHHHHh--cCCCEEEEeCCCCCCChHHHHhhcC
Confidence 99999999999984432 2333343 5899999 99998876555666654
No 93
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.97 E-value=7.4e-29 Score=282.82 Aligned_cols=330 Identities=16% Similarity=0.149 Sum_probs=238.0
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccC----CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~----~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE 475 (863)
++++|+| |++||..+||+|++|+.+|++++++... ..+.++...+|+++|+++++. +.+++++||++||+
T Consensus 46 ~~~~~~s---n~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~---~~~l~~~sG~~an~ 119 (402)
T TIGR01821 46 DVTVWCS---NDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGK---ESALVFTSGYVAND 119 (402)
T ss_pred eEEEeEc---cCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCC---CeEEEECchHHHHH
Confidence 8999998 8999999999999999999999876431 124578899999999999973 57899999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.|++++.+ + + +..+|..+..||+++..++..++.+..
T Consensus 120 ~ai~~l~~-~--------~-----------~~~~v~~~~~~h~s~~~~~~~~g~~~~----------------------- 156 (402)
T TIGR01821 120 ATLATLAK-I--------I-----------PGCVIFSDELNHASMIEGIRHSGAEKF----------------------- 156 (402)
T ss_pred HHHHHhhC-C--------C-----------CCCEEEEcchHhHHHHHHHHHcCCeEE-----------------------
Confidence 99998831 1 0 145788888899988766654321100
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
.++. +| .+++++.++. ..++++.+|++|++ +++.|.
T Consensus 157 -----~~~~--------------------------~d--------~~~l~~~l~~----~~~~~~~~v~~e~~-~~~~G~ 192 (402)
T TIGR01821 157 -----IFRH--------------------------ND--------VAHLEKLLQS----VDPNRPKIIAFESV-YSMDGD 192 (402)
T ss_pred -----EECC--------------------------CC--------HHHHHHHHHh----ccCCCCeEEEEcCC-CCCCCC
Confidence 0000 11 1234445532 12235789999998 999998
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccc-c-ccccCCcchhhhcCC--CCcEE--EeccccC--CCCCCceeeeccHHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGC--VPDIA--CYGKLLT--GGVIPLAATLATNAV 707 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~T-G-fGRtG~~~a~e~~gv--~PDiv--t~sKgLg--gG~~Pigav~~~~~i 707 (863)
+.+ +++|+++|++||++||+||+|+ | +|.+|.+ ..+++++ .||++ ||||+++ || ++++++++
T Consensus 193 ~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g~g-~~~~~~~~~~~div~~t~sKa~g~~GG-----~i~~~~~~ 262 (402)
T TIGR01821 193 IAP----IEEICDLADKYGALTYLDEVHAVGLYGPRGGG-IAERDGLMHRIDIIEGTLAKAFGVVGG-----YIAASRKL 262 (402)
T ss_pred ccC----HHHHHHHHHHcCCEEEEeCcccccccCCCCCc-cchhccCCCCCeEEEEechhhhccCCc-----eeecCHHH
Confidence 877 9999999999999999999997 3 2444543 3466676 47887 9999997 55 48889999
Q ss_pred HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChh-hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceE
Q 002941 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ-TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL 786 (863)
Q Consensus 708 ~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~-l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~ 786 (863)
++.+..... .+.+|++.+|+++++++++|+.+++.+ +.+++.++.+++.+.+ .+. ..+. +...|.+
T Consensus 263 ~~~l~~~~~----~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L----~~~--g~~~---~~~~~~i 329 (402)
T TIGR01821 263 IDAIRSYAP----GFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLL----EAL--GIPV---IPNPSHI 329 (402)
T ss_pred HHHHHHhCc----CceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH----HHc--CCCc---CCCCCCE
Confidence 998864221 133577899999999999999986543 3344444455554433 221 2222 2345778
Q ss_pred EEEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-------C-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 787 CAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 787 ~~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-------g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+.+.+... ..+..+++.|++ +||++++. + +.+|++|++.+|++|+|+++++|+++++++
T Consensus 330 ~~i~~~~~--------~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 330 VPVIIGDA--------ALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDRL 397 (402)
T ss_pred EEEEeCCH--------HHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 87766432 135678888875 59999763 3 689999999999999999999999988764
No 94
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.97 E-value=1.6e-28 Score=280.48 Aligned_cols=330 Identities=15% Similarity=0.106 Sum_probs=238.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccC----CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~----~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE 475 (863)
+++||+| |+++|+..||+|++|+.++++++++... ..+.++...+|+++|+++.+. ++.++++||++||+
T Consensus 47 ~~~~~~s---~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~---~~~~~~~sG~~an~ 120 (407)
T PRK09064 47 EVTVWCS---NDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGK---EAALVFTSGYVSND 120 (407)
T ss_pred eEEEEEC---CCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCC---CcEEEECcHHHHHH
Confidence 8999998 8899998899999999999999876421 113578899999999999873 57888999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.|++++.+ + . +..+|..+..+|++...++...+.+.
T Consensus 121 ~ai~~l~~-~--------~-----------~~~~i~~~~~~h~s~~~~~~~~~~~~------------------------ 156 (407)
T PRK09064 121 ATLSTLAK-L--------I-----------PDCVIFSDELNHASMIEGIRRSRCEK------------------------ 156 (407)
T ss_pred HHHHHHhC-C--------C-----------CCCEEEEeCcchHHHHHHHHHcCCcE------------------------
Confidence 99998832 1 0 13466767667887655544322110
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
..++. +| .+.+++.++. ..++++.+|++|++ +++.|.
T Consensus 157 ----~~~~~--------------------------~d--------~~~le~~l~~----~~~~~~~~v~~~~v-~s~~G~ 193 (407)
T PRK09064 157 ----HIFRH--------------------------ND--------VAHLEELLAA----ADPDRPKLIAFESV-YSMDGD 193 (407)
T ss_pred ----EEECC--------------------------CC--------HHHHHHHHHh----ccCCCCeEEEEeCC-CCCCcc
Confidence 00000 11 1345555542 12245789999998 999998
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccc-c-ccccCCcchhhhcCC--CCcEE--EeccccC--CCCCCceeeeccHHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGC--VPDIA--CYGKLLT--GGVIPLAATLATNAV 707 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~T-G-fGRtG~~~a~e~~gv--~PDiv--t~sKgLg--gG~~Pigav~~~~~i 707 (863)
+.+ +++|+++|++||++||+||+|+ | ||++|.++ .++.++ .||++ ||||++| || ++++++++
T Consensus 194 ~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~~GG-----~~~~~~~~ 263 (407)
T PRK09064 194 IAP----IAEICDLADKYNALTYLDEVHAVGMYGPRGGGI-AERDGLMDRIDIIEGTLAKAFGVMGG-----YIAGSAAL 263 (407)
T ss_pred ccC----HHHHHHHHHHcCCEEEEECCCcccccCCCCCCh-HHhcCCCCCCeEEEEecchhhhccCc-----eEecCHHH
Confidence 887 9999999999999999999997 6 58888765 567776 57888 9999987 55 48889999
Q ss_pred HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChh-hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceE
Q 002941 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ-TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL 786 (863)
Q Consensus 708 ~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~-l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~ 786 (863)
++.+..... .+.+|++.+|+++++++++|+++++.+ ..++++++.+++.+.| .+. ..+. +...+.+
T Consensus 264 ~~~l~~~~~----~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L----~~~--g~~~---~~~~~~i 330 (407)
T PRK09064 264 VDAVRSYAP----GFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAAL----DAA--GIPV---MPNESHI 330 (407)
T ss_pred HHHHHHhCc----cccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH----HHc--CCCC---CCCCCCE
Confidence 998764211 134577889999999999999987543 2355555555555433 221 2222 2234667
Q ss_pred EEEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-------C-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 787 CAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 787 ~~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-------g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+.+.+.+. ..+..+.+.|++ +||++++. + +.+|++|++.+|++|+++++++|+++++++
T Consensus 331 v~i~~~~~--------~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~~ 398 (407)
T PRK09064 331 VPVMVGDP--------EKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWARL 398 (407)
T ss_pred EEEEeCCH--------HHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 77766432 135678888875 59999752 2 689999999999999999999999988765
No 95
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=99.96 E-value=4.9e-29 Score=261.60 Aligned_cols=202 Identities=28% Similarity=0.353 Sum_probs=166.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCC---CCchhHHHhhccccccccCCCccccccch
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH---DSDSRFLFTKLPSLSLRRNFPSSLILSNS 115 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (863)
.|||+||+|++|||+||++|+++|+ ++|++|+|||||++|+.. +.|..++.+.+ ++
T Consensus 1 ~i~I~~t~t~~GKT~vs~~L~~~l~-----~~g~~v~~~KPv~~g~~~~~~~~d~~~~~~~~-~~--------------- 59 (222)
T PRK00090 1 RLFVTGTDTDVGKTVVTAALAQALR-----EAGYSVAGYKPVQSGCEETDRNGDALALQRLS-GL--------------- 59 (222)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHH-----HcCCceEEEeeEecCCCCCCCcHHHHHHHHHc-CC---------------
Confidence 4899999999999999999999999 999999999999999753 33555544432 22
Q ss_pred hhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCChh
Q 002941 116 ILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDS 195 (863)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~ 195 (863)
. .+....++|.|+.|.||++++..+ +..++.+
T Consensus 60 ----------------~-------------------------------~~~~~~~~~~~~~~~sp~~a~~~~-~~~~~~~ 91 (222)
T PRK00090 60 ----------------P-------------------------------LDYEDVNPYRFEEPLSPHLAAALE-GVAIDLE 91 (222)
T ss_pred ----------------C-------------------------------CChhhcCceeeCCCCCHHHHHHHh-CCCCCHH
Confidence 0 011236789999999999999998 8888899
Q ss_pred HHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHH
Q 002941 196 KVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK 275 (863)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~ 275 (863)
++.+.++++.+++ |++||||+||+++|+....+++|+++.+++|||+|++.+++++++++.+++.++
T Consensus 92 ~i~~~~~~l~~~~-------------D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~~~i~~~~~~i~~l~ 158 (222)
T PRK00090 92 KISAALRRLAQQY-------------DLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLLTLEAIR 158 (222)
T ss_pred HHHHHHHHHHhhC-------------CEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHH
Confidence 9999998877666 999999999999998877899999999999999999999999999999999999
Q ss_pred hCCCcEEEEEEcCCCCC-------CHHHHHHhhcCCCCeee-cCCCCCCCchhhhhh
Q 002941 276 LRGYDVVAVVFEDHGLV-------NEVPLMSYLRNRVPVLV-LPPLPQDSSNDLMEW 324 (863)
Q Consensus 276 ~~~~~v~gvi~n~~~~~-------~~~~~~~~~~~~~pvl~-~p~~~~~~~~~~~~~ 324 (863)
.+|+++.|+|+|++... +.+.++++ .++|++| +|+........+.++
T Consensus 159 ~~~~~i~gvIlN~~~~~~~~~~~~~~~~l~~~--~gi~vlg~ip~~~~~~~~~~~~~ 213 (222)
T PRK00090 159 ARGLPLAGWVANGIPPEPGLRHAENLATLERL--LPAPLLGELPYLAEAELAAAAEY 213 (222)
T ss_pred HCCCCeEEEEEccCCCcchhHHHHHHHHHHHH--cCCCeEEecCCCCCcchHHHHhh
Confidence 99999999999987433 33444554 5899999 999755433333333
No 96
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.96 E-value=5.2e-28 Score=274.81 Aligned_cols=346 Identities=14% Similarity=0.112 Sum_probs=232.7
Q ss_pred eeecccccccCCCCCcHHHHHHHHHHHHhcccccC----CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHH
Q 002941 403 DACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (863)
Q Consensus 403 D~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~----~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~AL 478 (863)
||.| +++||..+||++++++.+++++++..+. ....+....+|+++|+++.+. +..++++||..|+..++
T Consensus 2 ~f~s---~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~---e~al~~~sG~~a~~~~i 75 (392)
T PLN03227 2 NFAT---HDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGT---ESAILYSDGASTTSSTV 75 (392)
T ss_pred CCcC---cCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCC---CcEEEecCcHHHHHHHH
Confidence 4554 7788888999999999999999774431 112356789999999999984 57888899999998777
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
....+ .| ..|| .+..-|+++..++.+++..
T Consensus 76 ~~l~~---------~G------------D~Vl-~~~~~h~s~~~~~~l~~~~---------------------------- 105 (392)
T PLN03227 76 AAFAK---------RG------------DLLV-VDRGVNEALLVGVSLSRAN---------------------------- 105 (392)
T ss_pred HHhCC---------CC------------CEEE-EeccccHHHHHHHHHcCCe----------------------------
Confidence 65411 11 3455 4445566655443332100
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcC-C--CCCCCCcEEEEEEccccccCCCc
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN-P--GLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~-i--~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
+..++. +|..++ +.+.+.+... . ......+...|++||+ ++++|.
T Consensus 106 ~~~~~~--------------------------~d~~~l-----~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v-~~~~G~ 153 (392)
T PLN03227 106 VRWFRH--------------------------NDMKDL-----RRVLEQVRAQDVALKRKPTDQRRFLVVEGL-YKNTGT 153 (392)
T ss_pred EEEeCC--------------------------CCHHHH-----HHHHHHhhhhccccccccCCCcEEEEEcCC-cCCCCc
Confidence 000000 110111 1111122100 0 0001124678999998 999998
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccc--cccccCCcchhhhcCCCC----cEEEeccccCCCCCCceeeeccHHHHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT--GFWRLGVETTADLLGCVP----DIACYGKLLTGGVIPLAATLATNAVFD 709 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~T--GfGRtG~~~a~e~~gv~P----Divt~sKgLggG~~Pigav~~~~~i~~ 709 (863)
+++ +++++++|++||++||+||+|+ ++|++|. |+++++|+.| ||+++|++-+.| .+.|++++++++++
T Consensus 154 i~~----l~~i~~l~~~~g~~livDe~~~~g~~g~~G~-g~~~~~g~~p~~~~Div~~slsk~~g-~~gg~v~~~~~~~~ 227 (392)
T PLN03227 154 LAP----LKELVALKEEFHYRLILDESFSFGTLGKSGR-GSLEHAGLKPMVHAEIVTFSLENAFG-SVGGMTVGSEEVVD 227 (392)
T ss_pred ccC----HHHHHHHHHHcCCEEEEECcccccccCCCCC-cHHHHcCCCCCCCceEEEeechhhhh-ccCcEEecCHHHHH
Confidence 887 9999999999999999999997 3444555 6899999999 999877332222 33455778999988
Q ss_pred hhhcCCccceeecccCCCcc--HHHHHHHHHHHHH-hcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc---
Q 002941 710 SFVGDSKLKALLHGHSYSAH--ALGCAAAAKSIKW-FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL--- 783 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~--pla~AAalAaL~~-l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~--- 783 (863)
.+.. ..+++||+++ |+.|+|++++++. ++++++.+++.++++++++.|+ + ..+|.+.++||.
T Consensus 228 ~~~~------~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~----~--~~~~~~~~~rg~~~~ 295 (392)
T PLN03227 228 HQRL------SGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLT----N--SSHPYALKLRNRLVI 295 (392)
T ss_pred HHHH------hCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH----h--cCCcccccccccccc
Confidence 7753 2367788886 8888888877754 5667788888888888887553 2 356778888883
Q ss_pred -----ceEEEEEEccCCcCCCC-chHHHHHHHHHHHHCCcEEEecC------------CEEEEecCCCCcHHHHHHHHHH
Q 002941 784 -----GTLCAIELQAAGCNAGY-GSLYAASLLKKLREDGVYMRPLG------------NVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 784 -----Gl~~~iel~~~~~~~~~-~~~~~~~l~~~l~e~GV~~~p~g------------~~lr~~ppl~~t~eeid~~v~~ 845 (863)
|+|++|++.+....... .......+++.|+++|+++.+.+ ..+|+.....+|+||||+++++
T Consensus 296 ~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~ 375 (392)
T PLN03227 296 TSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDKLLTV 375 (392)
T ss_pred CCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHHHHHH
Confidence 55899999653211001 11134588999999999997543 3455666666699999999999
Q ss_pred HHHHHHHHH
Q 002941 846 LYQRLEEFD 854 (863)
Q Consensus 846 L~~~l~~l~ 854 (863)
|+++++++.
T Consensus 376 l~~~~~~~~ 384 (392)
T PLN03227 376 LGEAVEAIL 384 (392)
T ss_pred HHHHHHHHH
Confidence 999998763
No 97
>PLN02955 8-amino-7-oxononanoate synthase
Probab=99.96 E-value=2e-27 Score=270.60 Aligned_cols=338 Identities=10% Similarity=0.024 Sum_probs=251.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE 475 (863)
++++|+| |++||..+||+|++|+.+++++++... ...+.++.+.+|+++|+++++ .+.+++++||+.||.
T Consensus 103 ~~l~FsS---ndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g---~e~all~sSGy~AN~ 176 (476)
T PLN02955 103 KLLLFSG---NDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKK---KEDCLVCPTGFAANM 176 (476)
T ss_pred eEEEeec---cCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHC---CCcEEEECChHHHHH
Confidence 8999998 999999999999999999999998653 234567889999999999998 468999999999999
Q ss_pred HHHHHHHHHH--HhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcc
Q 002941 476 IALKMAFRKF--SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (863)
Q Consensus 476 ~ALklA~r~~--~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (863)
+++....... ....+. +. ..+..+|..+...|.+...++.++.... + .
T Consensus 177 ~~i~aL~~~~~~~~~~~~-~~---------~~~~d~i~~D~~~HaSI~dG~~ls~~~~--~---------------a--- 226 (476)
T PLN02955 177 AAMVAIGSVASLLAASGK-PL---------KNEKVAIFSDALNHASIIDGVRLAERQG--N---------------V--- 226 (476)
T ss_pred HHHHHHhhcccccccccc-cc---------CCCCcEEEEeccchHHHHHHHHhccccC--C---------------c---
Confidence 9997641000 000000 00 0136688999999999887776642100 0 0
Q ss_pred cccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
....++ .|| .+.|++.|+. ..++.+.||+|+| .++.
T Consensus 227 ------~~~~f~------------------------HND--------~~~Le~~L~~-----~~~~~~~Vv~EgV-~Smd 262 (476)
T PLN02955 227 ------EVFVYR------------------------HCD--------MYHLNSLLSS-----CKMKRKVVVTDSL-FSMD 262 (476)
T ss_pred ------eEEEeC------------------------CCC--------HHHHHHHHHh-----CCCCceEEEEeCC-CCCC
Confidence 000011 133 2456667753 2334578999998 9999
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC--cchhhhcCCCCcE----EEeccccC--CCCCCceeeeccH
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVPDI----ACYGKLLT--GGVIPLAATLATN 705 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--~~a~e~~gv~PDi----vt~sKgLg--gG~~Pigav~~~~ 705 (863)
|.+.| |++|+++|++||++||+||+| |+|+.|+ .+..+++|+.||+ .||||++| ||| +++++
T Consensus 263 Gdiap----L~eL~~L~~~~ga~LiVDEAH-~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~GGf-----i~gs~ 332 (476)
T PLN02955 263 GDFAP----MEELSQLRKKYGFLLVIDDAH-GTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCHGGF-----IACSK 332 (476)
T ss_pred CCcCC----HHHHHHHHHHcCcEEEEcccc-cCceecCCCCcHHHHhCCCCCCcEEEEeCccchhccCce-----eecHH
Confidence 99888 999999999999999999999 6779988 6778899998876 58999998 775 99999
Q ss_pred HHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc-ChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc
Q 002941 706 AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK-DPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG 784 (863)
Q Consensus 706 ~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~-~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G 784 (863)
++++.+...++ .+.+|.+..|..++++++++++++ ++..+++++++.+++++. ...+ + ..
T Consensus 333 ~~~~~l~~~~~----~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~---------~G~~----~--~s 393 (476)
T PLN02955 333 KWKQLIQSRGR----SFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKAL---------SGVD----I--SS 393 (476)
T ss_pred HHHHHHHHhCC----CCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh---------cCCC----C--CC
Confidence 99999886432 233444667778888999999985 445567788877777651 1221 1 25
Q ss_pred eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------C-CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 785 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 785 l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.++.|.+.++. .+..+++.|+++||++.+. | .++|++.+..+|++||+.++++|.++.+.+.
T Consensus 394 PI~pI~ig~~~--------~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~~~~ 463 (476)
T PLN02955 394 PIISLVVGNQE--------KALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCLDFDN 463 (476)
T ss_pred CEEEEEeCCHH--------HHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 67777776553 5778999999999999742 2 5899999999999999999999988766543
No 98
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.96 E-value=1.2e-27 Score=266.87 Aligned_cols=326 Identities=17% Similarity=0.159 Sum_probs=255.7
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE 475 (863)
+++||+| |++||.++||+|++|+.+++++++... ...++++.+.+|+++|+++++ .+++++++||..||.
T Consensus 40 ~~~nf~S---NdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g---~e~al~f~SGy~AN~ 113 (388)
T COG0156 40 KVLNFCS---NDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLG---AEAALLFSSGFVANL 113 (388)
T ss_pred eeEeeec---cCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhC---CCcEEEEcccchhHH
Confidence 8999998 899999999999999999999986543 234678999999999999998 478999999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
+++-... + +..+|..+.-.|.+.+.+..+++...++
T Consensus 114 ~~i~~l~-----------~-----------~~dli~~D~lnHASiidG~rls~a~~~~---------------------- 149 (388)
T COG0156 114 GLLSALL-----------K-----------KGDLIFSDELNHASIIDGIRLSRAEVRR---------------------- 149 (388)
T ss_pred HHHHHhc-----------C-----------CCcEEEEechhhhhHHHHHHhCCCcEEE----------------------
Confidence 9998662 2 2689999999999988887776432211
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
| .+ +| .++||+.|++.- ..++ +...|++|.| ++|.|.
T Consensus 150 ------------f-------------------~H-nD--------~~~Le~~l~~~~-~~~~-~~~~IvtegV-fSMdGd 186 (388)
T COG0156 150 ------------F-------------------KH-ND--------LDHLEALLEEAR-ENGA-RRKLIVTEGV-FSMDGD 186 (388)
T ss_pred ------------e-------------------cC-CC--------HHHHHHHHHhhh-ccCC-CceEEEEecc-ccCCCC
Confidence 0 00 23 256677775411 1122 5678999998 999999
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC--cchhhhcCCCCc---EE--EeccccC--CCCCCceeeeccHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVPD---IA--CYGKLLT--GGVIPLAATLATNA 706 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--~~a~e~~gv~PD---iv--t~sKgLg--gG~~Pigav~~~~~ 706 (863)
+.| |++|.+||+|||++|++||+| ++|..|. .+.++++|+.|+ |+ ||||++| ||| +++++.
T Consensus 187 iAp----L~~l~~L~~ky~a~L~VDEAH-a~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~Gg~-----v~g~~~ 256 (388)
T COG0156 187 IAP----LPELVELAEKYGALLYVDEAH-AVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSGGY-----IAGSAA 256 (388)
T ss_pred cCC----HHHHHHHHHHhCcEEEEEccc-cccccCCCCccHHHHhCCCCccceEEEEEchhhhcccCce-----eeCcHH
Confidence 999 999999999999999999999 7999997 566788999765 33 8999998 554 999999
Q ss_pred HHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc-ChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccce
Q 002941 707 VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK-DPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGT 785 (863)
Q Consensus 707 i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~-~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl 785 (863)
+.+++...++ .+.+|.+-.|..++++.++|++++ .++.+++++++.++++..+.. .... .....-.
T Consensus 257 ~~d~L~~~ar----~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~------~~~~---~~~s~s~ 323 (388)
T COG0156 257 LIDYLRNRAR----PFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKA------LGLV---LLPSESP 323 (388)
T ss_pred HHHHHHHhCC----ceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh------cCCc---cCCCCCC
Confidence 9999987543 466788899999999999999996 456778888888887743211 1111 1123334
Q ss_pred EEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------C-CEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 786 LCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 786 ~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g-~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
++.+.+.++. .+..+...|+++||++.+. | .++|+++++.+|++||+.++++|.+.
T Consensus 324 I~pv~~gd~~--------~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 324 IIPVILGDEE--------RALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred eeeeEeCCHH--------HHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 6777777643 5788999999999999742 2 79999999999999999999998764
No 99
>PRK07179 hypothetical protein; Provisional
Probab=99.94 E-value=2.7e-25 Score=254.01 Aligned_cols=331 Identities=13% Similarity=0.066 Sum_probs=225.4
Q ss_pred ecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc--CCCC--CChHHHHHHHHHHhhcC
Q 002941 382 RCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM--FPEN--VYEPALECAELLLQGVG 457 (863)
Q Consensus 382 ~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~--~~~~--~~~~~~eLae~L~~~~p 457 (863)
++++|.+++|-+|+ .|||+. +||+|++|+.+|+++++... ...+ ..+...+|+++|+++++
T Consensus 49 ~~~~g~~~~~~~~~----~YL~l~-----------~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g 113 (407)
T PRK07179 49 GKTPGPDAIILQSN----DYLNLS-----------GHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTG 113 (407)
T ss_pred ecCCCCcEEEeecC----CccCCC-----------CCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhC
Confidence 44788899999999 899977 58999999999999874221 1112 23578999999999988
Q ss_pred CCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCc
Q 002941 458 KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537 (863)
Q Consensus 458 ~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~ 537 (863)
. ++++|++||++||+.+++...+ +| ..|+. +.-.|.....++...+
T Consensus 114 ~---~~~~~~~sG~~An~~~l~~l~~---------~g------------~~v~~-~~~~h~s~~~~~~~~g--------- 159 (407)
T PRK07179 114 F---ESCLLCQSGWAANVGLLQTIAD---------PN------------TPVYI-DFFAHMSLWEGVRAAG--------- 159 (407)
T ss_pred C---CcEEEECCHHHHHHHHHHHhCC---------CC------------CEEEE-ECCcCHHHHHHHHHCC---------
Confidence 3 5789999999999999987621 12 23443 3444443322211110
Q ss_pred CCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 002941 538 QPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (863)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~ 617 (863)
....+++ .+| .+.+++.+.+
T Consensus 160 ---------------------~~~~~~~------------------------~~d--------~~~l~~~l~~------- 179 (407)
T PRK07179 160 ---------------------AQAHPFR------------------------HND--------VDHLRRQIER------- 179 (407)
T ss_pred ---------------------CeEEEec------------------------CCC--------HHHHHHHHHh-------
Confidence 0001110 012 2445555642
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccc---cCCcchhhhcCCC--CcEEE--eccc
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR---LGVETTADLLGCV--PDIAC--YGKL 690 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGR---tG~~~a~e~~gv~--PDivt--~sKg 690 (863)
.+.++|++|++ +++.|.+.| +++|.++|++||++||+||+|+ +|+ +|..+ ++.+|+. +|+++ ++|+
T Consensus 180 ~~~~lV~v~~v-~n~tG~i~p----l~~I~~l~~~~~~~livDea~~-~g~~g~~g~g~-~~~~~~~~~vdi~~~S~sK~ 252 (407)
T PRK07179 180 HGPGIIVVDSV-YSTTGTIAP----LADIVDIAEEFGCVLVVDESHS-LGTHGPQGAGL-VAELGLTSRVHFITASLAKA 252 (407)
T ss_pred cCCeEEEECCC-CCCCCcccc----HHHHHHHHHHcCCEEEEECccc-ccCcCCCCCch-HHhcCCCCCCCEEEeechHh
Confidence 23578999997 999998887 8999999999999999999996 555 44432 5567764 48865 6899
Q ss_pred cCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcCh-hhHHhHHHHHHHHHHHHHHHHHH
Q 002941 691 LTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDP-QTNHNIIPERRILRELWDLELIQ 769 (863)
Q Consensus 691 LggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~-~l~~~l~~~~~~l~~~l~~~l~~ 769 (863)
+++ ++|++++++++++.+.... .+..++.|+ .|..++++.++++.+++. +..+++.++.+++.+.| .+
T Consensus 253 ~g~---~~G~l~~~~~~~~~~~~~~--~~~~~~~t~--~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L----~~ 321 (407)
T PRK07179 253 FAG---RAGIITCPRELAEYVPFVS--YPAIFSSTL--LPHEIAGLEATLEVIESADDRRARLHANARFLREGL----SE 321 (407)
T ss_pred hhc---cCeEEEeCHHHHHHHHHhC--cCeeeCCCC--CHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH----HH
Confidence 974 5899999999988775321 111233443 456667777888887554 34555665555555533 22
Q ss_pred HHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE----ec----CCEEEEecCCCCcHHHHHH
Q 002941 770 QISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR----PL----GNVIYLMCGPCSSPEVCSQ 841 (863)
Q Consensus 770 ~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~----p~----g~~lr~~ppl~~t~eeid~ 841 (863)
.+. .+++.|.++.+++.... .+..+.+.|.++||+.. |. .+.+||+++..+|++|+++
T Consensus 322 ----~g~--~v~~~~~i~~l~~~~~~--------~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~ 387 (407)
T PRK07179 322 ----LGY--NIRSESQIIALETGSER--------NTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDR 387 (407)
T ss_pred ----cCC--CCCCCCCEEEEEeCCHH--------HHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHH
Confidence 221 34567889888875321 35667889999999743 32 3789999999999999999
Q ss_pred HHHHHHHHHHHH
Q 002941 842 LLLKLYQRLEEF 853 (863)
Q Consensus 842 ~v~~L~~~l~~l 853 (863)
++++|++++++.
T Consensus 388 ~~~~l~~~~~~~ 399 (407)
T PRK07179 388 VLEVCREARDEV 399 (407)
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 100
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.94 E-value=2.3e-24 Score=243.40 Aligned_cols=342 Identities=15% Similarity=0.113 Sum_probs=234.4
Q ss_pred EEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHH
Q 002941 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELL 452 (863)
Q Consensus 377 ~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L 452 (863)
.++++ ++|.++|+ +|+ +|||+.++ .++||..+|+|++|+.+++.+++... ...+.++...++++++
T Consensus 24 ~~~~~--~~g~~~~~-~g~----~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l 93 (385)
T PRK05958 24 RPREG--GAGRWLVV-DGR----RMLNFASN---DYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEEL 93 (385)
T ss_pred ccccc--CCCceeEe-CCc----eEEEeeCC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHH
Confidence 35555 78899997 888 99999985 35787578999999999998865321 1123467788999999
Q ss_pred HhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCC
Q 002941 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (863)
Q Consensus 453 ~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~ 532 (863)
+++++. +.++++++|++++..+++... ++ .+.|.+...+|+.+..++.+.+...
T Consensus 94 a~~~~~---~~~i~~~~g~~~~~~~l~~~~-----------~~-----------gd~V~~~~~~~~~~~~~~~~~g~~~- 147 (385)
T PRK05958 94 AEWFGA---ERALLFSSGYAANLAVLTALA-----------GK-----------GDLIVSDKLNHASLIDGARLSRARV- 147 (385)
T ss_pred HHHhCC---CcEEEECcHHHHHHHHHHHhC-----------CC-----------CCEEEEeCccCHHHHHHHHhcCCce-
Confidence 999873 577888899999988776441 11 2345566678887766554432110
Q ss_pred CCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 002941 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (863)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i 612 (863)
..++. .| .+.+++.++.
T Consensus 148 ---------------------------~~~~~--------------------------~d--------~~~l~~~i~~-- 164 (385)
T PRK05958 148 ---------------------------RRYPH--------------------------ND--------VDALEALLAK-- 164 (385)
T ss_pred ---------------------------EEeCC--------------------------CC--------HHHHHHHHHh--
Confidence 00110 01 1345555542
Q ss_pred CCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc-c-ccccCCcchhhhcC--CCCc---EE
Q 002941 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLG--CVPD---IA 685 (863)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T-G-fGRtG~~~a~e~~g--v~PD---iv 685 (863)
...+.++++++++ ++..|...+ +++|.++|++||++||+||+|+ | +|++|..+ ...++ ..+| +.
T Consensus 165 ---~~~~~~lvi~~~~-~~~~G~~~~----l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~~~~~~~i~~~ 235 (385)
T PRK05958 165 ---WRAGRALIVTESV-FSMDGDLAP----LAELVALARRHGAWLLVDEAHGTGVLGPQGRGL-AAEAGLAGEPDVILVG 235 (385)
T ss_pred ---ccCCCeEEEEEec-ccCCCCcCC----HHHHHHHHHHhCCEEEEECcccccccCCCCCch-HHhhCCCCCCceEEEE
Confidence 1234788999997 888887655 9999999999999999999994 2 34445433 22223 3567 45
Q ss_pred EeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcCh-hhHHhHHHHHHHHHHHHH
Q 002941 686 CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDP-QTNHNIIPERRILRELWD 764 (863)
Q Consensus 686 t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~-~l~~~l~~~~~~l~~~l~ 764 (863)
+++|+++. +.|++++++++++.+..... .+.++++.+|++++++.++|+.+++. ++.+++.++.+++.+.|
T Consensus 236 s~sK~~~~---~Gg~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L- 307 (385)
T PRK05958 236 TLGKALGS---SGAAVLGSETLIDYLINRAR----PFIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGL- 307 (385)
T ss_pred echhhccc---CCcEEEcCHHHHHHHHHhCc----cceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-
Confidence 88999963 33678899999887753211 23455678899999999999988653 44455555555555433
Q ss_pred HHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------CCEEEEecCCCCcH
Q 002941 765 LELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSP 836 (863)
Q Consensus 765 ~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------g~~lr~~ppl~~t~ 836 (863)
.+ .+ +.-+.+.|.++.+.+... ....++.+.|+++||++.+. .+.+|++|+..+++
T Consensus 308 ---~~----~~-~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~ 371 (385)
T PRK05958 308 ---RA----LG-FQLMDSQSAIQPLIVGDN--------ERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTE 371 (385)
T ss_pred ---HH----cC-CCcCCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCCCCH
Confidence 22 12 112345778888877432 13567999999999999752 26899999888999
Q ss_pred HHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRL 850 (863)
Q Consensus 837 eeid~~v~~L~~~l 850 (863)
+++++++++|++++
T Consensus 372 ~~i~~~l~~l~~~~ 385 (385)
T PRK05958 372 ADIDRLLEALAEAL 385 (385)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998753
No 101
>PRK00784 cobyric acid synthase; Provisional
Probab=99.93 E-value=6.9e-26 Score=263.55 Aligned_cols=198 Identities=17% Similarity=0.080 Sum_probs=151.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCC----C----CCCchhHHHhhccccccccCCCc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGY----P----HDSDSRFLFTKLPSLSLRRNFPS 108 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~----~----~~~~~~~~~~~~~~~~~~~~~~~ 108 (863)
|++|||+||+|+||||+||++|+++|+ ++|++|++||||++.. . +.+|..++++...++.
T Consensus 2 ~~~ifItGT~T~vGKT~vt~~L~~~l~-----~~G~~v~~~Kpv~~~~~~~~~~dg~~~~Da~~l~~~~~~~~------- 69 (488)
T PRK00784 2 AKALMVQGTASDAGKSTLVAGLCRILA-----RRGYRVAPFKAQNMSLNSAVTADGGEIGRAQALQAEAAGVE------- 69 (488)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCeEecccchhccccceECCCCCeeHHHHHHHHHhCCCC-------
Confidence 678999999999999999999999999 9999999999985211 1 1234444444333220
Q ss_pred cccccchhhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHh---
Q 002941 109 SLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAE--- 185 (863)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~--- 185 (863)
+...++|+.++ |.+|+.++.
T Consensus 70 --------------------------------------------------------~~~~i~P~~~~-~~sp~~a~~~~~ 92 (488)
T PRK00784 70 --------------------------------------------------------PSVDMNPVLLK-PQSDRGSQVIVQ 92 (488)
T ss_pred --------------------------------------------------------chhccCCEEec-CCCCCcceEEEc
Confidence 01236788764 788886642
Q ss_pred ------------hhcCCCCChhHHHHHHHHHHHccccccccccccCCCceEEEeCCCccc-ccCCC-CCcHhHHhhhcCC
Q 002941 186 ------------RESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVA-SPGPS-GSLQCDLYRPFRL 251 (863)
Q Consensus 186 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~-~p~~~-~~~~~dla~~l~~ 251 (863)
.+ +..+..++|.+.++++.+++ |++|||||||++ .|+.+ +.+++|||+.+++
T Consensus 93 g~~~~~l~a~~~~~-~~~~~~~~I~~~~~~l~~~~-------------D~vIVEGaGg~~~~~L~~~~~~~~dlak~l~~ 158 (488)
T PRK00784 93 GKPVGNMDARDYHD-YKPRLLEAVLESLDRLAAEY-------------DVVVVEGAGSPAEINLRDRDIANMGFAEAADA 158 (488)
T ss_pred CccccccCHHHHhh-cchhhHHHHHHHHHHHHhcC-------------CEEEEECCCCccccCcccCCchhHHHHHHcCC
Confidence 23 45678899999998877665 999999999999 56643 5789999999999
Q ss_pred CEEEEECCCCC-cHHHHHHHHHHHHhC-CCcEEEEEEcCCCCCC------HHHHHHhhcCCCCeee-cCCCCCCCch
Q 002941 252 PGILVGDGRLG-GISGTISAYESLKLR-GYDVVAVVFEDHGLVN------EVPLMSYLRNRVPVLV-LPPLPQDSSN 319 (863)
Q Consensus 252 pvilV~~~~~g-~i~~~~~~~~~~~~~-~~~v~gvi~n~~~~~~------~~~~~~~~~~~~pvl~-~p~~~~~~~~ 319 (863)
|||||++.++| ++++++.+++.+... +.+|+|||+|++..+. ...++++ .++||+| ||+.+.+.-+
T Consensus 159 PVILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~~~~~~~~~~~~~l~~~--~gipvLG~iP~~~~L~~~ 233 (488)
T PRK00784 159 PVILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFRGDISLLEPGLDWLEEL--TGVPVLGVLPYLDDLRLP 233 (488)
T ss_pred CEEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCCCCHHHHHHHHHHHHHh--cCCCEEEEcCCCcCCCcC
Confidence 99999999998 589999888888754 4799999999985431 2223343 5899999 9999887544
No 102
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.93 E-value=1.5e-23 Score=237.32 Aligned_cols=346 Identities=11% Similarity=0.051 Sum_probs=232.2
Q ss_pred EEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHH
Q 002941 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELL 452 (863)
Q Consensus 377 ~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L 452 (863)
.++.+ ++|++++ .+|+ +|+|+.++ +.+||..+|.+++++.+++.++.+.. .+.+..+...+++++|
T Consensus 18 ~~~~~--~~g~~~~-~~g~----~~id~~~~---~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l 87 (385)
T TIGR01825 18 RVLES--AQGPRVR-VNGK----EVINLSSN---NYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKL 87 (385)
T ss_pred ccccc--CCCceEE-ECCc----eEEEeecc---CccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHH
Confidence 34554 7889999 9998 99999873 55788789999999999998765421 1234567889999999
Q ss_pred HhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCC
Q 002941 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (863)
Q Consensus 453 ~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~ 532 (863)
++..+. +..++.+||++|+..|++..+ ++ .++|.....+|+....++.+.+...
T Consensus 88 ~~~~g~---~~~i~~~sG~~a~~~a~~~~~-----------~~-----------gd~vi~~~~~~~~~~~~~~~~g~~~- 141 (385)
T TIGR01825 88 AKFKKT---EAALVFQSGFNTNQGVLSALL-----------RK-----------GDIVLSDELNHASIIDGLRLTKATK- 141 (385)
T ss_pred HHHhCC---CcEEEECcHHHHHHHHHHHhC-----------CC-----------CCEEEEEccccHHHHHHHHhcCCce-
Confidence 998773 466778899999998887652 11 2345566778887665544322100
Q ss_pred CCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 002941 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (863)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i 612 (863)
..++. .| .+.+++.+.+
T Consensus 142 ---------------------------~~~~~--------------------------~d--------~~~l~~~l~~-- 158 (385)
T TIGR01825 142 ---------------------------KIYKH--------------------------AD--------MDDLDRVLRE-- 158 (385)
T ss_pred ---------------------------EEeCC--------------------------CC--------HHHHHHHHHh--
Confidence 00000 01 1234444432
Q ss_pred CCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccc--ccccCCcchhhhcCCCCc----EEE
Q 002941 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTADLLGCVPD----IAC 686 (863)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TG--fGRtG~~~a~e~~gv~PD----ivt 686 (863)
....+..+|+++++ ++..|.+.+ +++|.++|++||+++|+||+++. ++++|. +...++++.+| +.+
T Consensus 159 --~~~~~~~~v~~~~v-~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~s 230 (385)
T TIGR01825 159 --NPSYGKKLIVTDGV-FSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAGR-GTVHHFGLEDKVDIQVGT 230 (385)
T ss_pred --hccCCCeEEEEecC-CcCCCCccC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC-ccHhhcCCCcCCcEEEEe
Confidence 11235788899997 899897766 89999999999999999999953 444443 34455666666 358
Q ss_pred eccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHHhHHHHHHHHHHHHHH
Q 002941 687 YGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDL 765 (863)
Q Consensus 687 ~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~~l~~~~~~l~~~l~~ 765 (863)
|||++++ +.|++++++++++.+..... .+..+...+|..++++.++|+.+++ .+..+++.++.+++.+.|
T Consensus 231 ~sK~~~~---~gG~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L-- 301 (385)
T TIGR01825 231 LSKAIGV---VGGYAAGHKELIEYLKNRAR----PFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGL-- 301 (385)
T ss_pred ccHHhhc---CCCEEecCHHHHHHHHHhCc----cccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH--
Confidence 9999952 34668889999988764211 0112334678889999999987743 344555555555554433
Q ss_pred HHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe-------cC-CEEEEecCCCCcHH
Q 002941 766 ELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-------LG-NVIYLMCGPCSSPE 837 (863)
Q Consensus 766 ~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p-------~g-~~lr~~ppl~~t~e 837 (863)
.+. ..+. +...+.++.+.+... .....+++.|+++||++++ .+ +.+|++|++.+++|
T Consensus 302 --~~~--g~~~---~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~e 366 (385)
T TIGR01825 302 --GKL--GYDT---GGSETPITPVVIGDE--------KAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTAEHTKD 366 (385)
T ss_pred --HHc--CCCC---CCCCCCEEEEEECCH--------HHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEcCCCCHH
Confidence 221 2221 123344666654321 1246788999999999853 12 68999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 002941 838 VCSQLLLKLYQRLEEF 853 (863)
Q Consensus 838 eid~~v~~L~~~l~~l 853 (863)
++++++++|+++++++
T Consensus 367 ~i~~~~~~l~~~~~~~ 382 (385)
T TIGR01825 367 DLDQALDAYEKVGKEL 382 (385)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988653
No 103
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.93 E-value=8.4e-24 Score=241.94 Aligned_cols=332 Identities=14% Similarity=0.110 Sum_probs=226.9
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE 475 (863)
+++++.| ++++|..+||+|++|+.++++++++.. .....++...+|+++|++++|. +..++++||++||+
T Consensus 47 ~~~~~~s---n~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~---~~~i~~~sG~~a~~ 120 (410)
T PRK13392 47 RVTIWCS---NDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGK---ESALLFTSGYVSND 120 (410)
T ss_pred eEEEEEC---CCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCC---CCEEEECcHHHHHH
Confidence 7888887 788888789999999999999987532 1112345788999999999983 57788889999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.+++...+.. + ..+|..+..+|++...++..++....
T Consensus 121 ~~i~~l~~~~-------~-------------g~~vi~~~~~h~s~~~~~~~~g~~~~----------------------- 157 (410)
T PRK13392 121 AALSTLGKLL-------P-------------GCVILSDALNHASMIEGIRRSGAEKQ----------------------- 157 (410)
T ss_pred HHHHHHhcCC-------C-------------CCEEEEehhhhHHHHHHHHHcCCeEE-----------------------
Confidence 9999552100 1 23666677799987665544321100
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
. ++. +| .+.+++.++. ...++..+|++|++ +++.|.
T Consensus 158 -----~--~~~------------------------~d--------~~~l~~~l~~----~~~~~t~~v~i~~~-~n~tG~ 193 (410)
T PRK13392 158 -----V--FRH------------------------ND--------LADLEEQLAS----VDPDRPKLIAFESV-YSMDGD 193 (410)
T ss_pred -----E--EeC------------------------CC--------HHHHHHHHHh----ccCCCCEEEEEeCC-CCCCcc
Confidence 0 000 11 0123334432 12245678999997 999998
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccc-cc-cccCCcchhhhcCC--CCcEE--EeccccCCCCCCceeeeccHHHHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGC--VPDIA--CYGKLLTGGVIPLAATLATNAVFD 709 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~T-Gf-GRtG~~~a~e~~gv--~PDiv--t~sKgLggG~~Pigav~~~~~i~~ 709 (863)
+.+ +++|.++|++||++||+||+|+ |+ |+.|.++ .++.++ .+|++ +|||++|. +.|++++++++++
T Consensus 194 ~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~~~~div~~tlsK~~g~---~GG~~~~~~~~~~ 265 (410)
T PRK13392 194 IAP----IEAICDLADRYNALTYVDEVHAVGLYGARGGGI-AERDGLMDRIDMIQGTLAKAFGC---LGGYIAASADLID 265 (410)
T ss_pred ccc----HHHHHHHHHHcCCEEEEECCccccCcCCCCCch-hhhccCCCCCcEEEEEChHhhhc---ccchhhcCHHHHH
Confidence 877 9999999999999999999997 43 5666544 455555 46877 89998863 2245788999999
Q ss_pred hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChh-hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEE
Q 002941 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ-TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCA 788 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~-l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~ 788 (863)
.+..... .+.++.+.+|++++++.++|+.+++.. ..+++.++.+++.+ .+.+. ..+ -..+.+.++.
T Consensus 266 ~l~~~~~----~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~----~L~~~--g~~---~~~~~~~~~~ 332 (410)
T PRK13392 266 FVRSFAP----GFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKA----KLNAN--GIP---VMPSPSHIVP 332 (410)
T ss_pred HHHHhCc----chhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHc--CCC---CCCCCCCEEE
Confidence 7764211 123466778899999999999875432 23334444444443 32221 122 1245566766
Q ss_pred EEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------C-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 789 IELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 789 iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+.+... ..+.++++.|+ ++||++.+. + ..+|+++++.+|++|+|+++++|+++++++
T Consensus 333 i~~~~~--------~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~~ 398 (410)
T PRK13392 333 VMVGDP--------TLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDRL 398 (410)
T ss_pred EEeCCH--------HHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 665422 13567888887 679999863 2 689999999999999999999999987654
No 104
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.91 E-value=2.5e-22 Score=226.78 Aligned_cols=328 Identities=15% Similarity=0.058 Sum_probs=220.8
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc-------ccc----CCCCCChHHHHHHHHHHhhcCCCCCCeEEEeC
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-------HVM----FPENVYEPALECAELLLQGVGKGWASRAYFSD 468 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~-------~~~----~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~ 468 (863)
+++||.| |++||++.||++.+++.+++.+++ ... .....++...++.++|+++++. +.+++++
T Consensus 5 ~~~~~~s---~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~---~~~l~~~ 78 (370)
T PRK05937 5 LSIDFVT---NDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGA---PEAFIVP 78 (370)
T ss_pred ceEEeEC---CCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCC---CeEEEEC
Confidence 6888888 899999999999999999999873 221 1112567899999999999984 5789999
Q ss_pred ChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCccc
Q 002941 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (863)
Q Consensus 469 SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~ 548 (863)
||+.||...+. + + .+ +.++|..+..+|+++..++.... .+.
T Consensus 79 sG~~a~~~~~~-~---~-------~~-----------~~d~ii~d~~~H~sv~~~~~~~~--~~~--------------- 119 (370)
T PRK05937 79 SGYMANLGLCA-H---L-------SS-----------VTDYVLWDEQVHISVVYSLSVIS--GWH--------------- 119 (370)
T ss_pred ChHHHHHHHHH-H---h-------CC-----------CCCEEEEEhhhhHHHHHHHHHcC--Cce---------------
Confidence 99999853222 1 1 11 15699999999999888765421 000
Q ss_pred CCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 002941 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (863)
Q Consensus 549 ~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPV 628 (863)
+.++. +| .+.+++.|+.. ...+++..+|+++++
T Consensus 120 -------------~~~~~------------------------~d--------~~~l~~~l~~~--~~~~~~~~~v~v~~v 152 (370)
T PRK05937 120 -------------QSFRH------------------------ND--------LDHLESLLESC--RQRSFGRIFIFVCSV 152 (370)
T ss_pred -------------EEecC------------------------CC--------HHHHHHHHHhh--hccCCCcEEEEEecC
Confidence 00110 11 13455555431 011123456889998
Q ss_pred cccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc-c-ccccCCcchhhhcCC---CCcEEEeccccCCCCCCceeeec
Q 002941 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGC---VPDIACYGKLLTGGVIPLAATLA 703 (863)
Q Consensus 629 iqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T-G-fGRtG~~~a~e~~gv---~PDivt~sKgLggG~~Pigav~~ 703 (863)
+++.|.+.| +++|.++|+++|++|++||+|+ | +|++|.++. ..++. .+|+.||||++|. +.+++++
T Consensus 153 -~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~-~~~~~~~~~~~~~tlsK~~g~---~G~~vl~ 223 (370)
T PRK05937 153 -YSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFC-HSLGYENFYAVLVTYSKALGS---MGAALLS 223 (370)
T ss_pred -CCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchH-HhhCCCCCcEEEEechhhhhc---CceEEEc
Confidence 999999888 9999999999999999999996 3 555665432 22332 3678899999874 1245677
Q ss_pred cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc
Q 002941 704 TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL 783 (863)
Q Consensus 704 ~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~ 783 (863)
.+++.+.+..... .+.++.+.+|.+++++.++++++++.. +..++..+.+++++.+. +... +.
T Consensus 224 ~~~~~~~~~~~~~----~~~~s~~~~~~~~~a~~aal~~l~~~~--~~~~~~l~~l~~~l~~~----l~~~-------~~ 286 (370)
T PRK05937 224 SSEVKQDLMLNSP----PLRYSTGLPPHLLISIQVAYDFLSQEG--ELARKQLFRLKEYFAQK----FSSA-------AP 286 (370)
T ss_pred CHHHHHHHHHhCC----CCeecCCCCHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHh----cCCC-------CC
Confidence 7776665542111 234556678999999999999986432 22333334444433222 2111 12
Q ss_pred ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe----cCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 784 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 784 Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p----~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
|....+.+... ....+.+.|.++||++.. ....+|++++..+|+||||+++++|++.++++.
T Consensus 287 ~~~~~i~~~~~---------~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edid~l~~~L~~~~~~~~ 352 (370)
T PRK05937 287 GCVQPIFLPGI---------SEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEVDILVSVLATYLEKYQ 352 (370)
T ss_pred CCEEEEEeCCh---------hHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 33344555322 245688889999998874 357899999999999999999999999987764
No 105
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=99.91 E-value=8.2e-23 Score=211.29 Aligned_cols=344 Identities=16% Similarity=0.141 Sum_probs=245.1
Q ss_pred EEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHH
Q 002941 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELL 452 (863)
Q Consensus 377 ~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L 452 (863)
.+|+++.|--..+...+ |..|.|++ +++||.++||+|++|..+++++++... |.+++.+.+..|+.+|
T Consensus 50 rVi~s~q~p~i~v~G~~-----k~ilnFca---NnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~ki 121 (417)
T KOG1359|consen 50 RVITSRQGPTIQVKGSD-----KKILNFCA---NNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKI 121 (417)
T ss_pred eEEeecccceEEEeccc-----cceeeecc---cccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHH
Confidence 46777544333333333 36888886 899999999999999999999987653 5567889999999999
Q ss_pred HhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCC
Q 002941 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (863)
Q Consensus 453 ~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~ 532 (863)
+.+.+. +..+.++|+.+||..++-..+ +. ..-|..+.-.|.+.+..+.+.- .|
T Consensus 122 Aqfh~r---ED~ilypscfdANag~feail----------~p------------edAvfSDeLNhASIIdGirLck--ry 174 (417)
T KOG1359|consen 122 AQFHGR---EDTILYPSCFDANAGAFEAIL----------TP------------EDAVFSDELNHASIIDGIRLCK--RY 174 (417)
T ss_pred HHHhCC---CceEEeccccccchHHHHHhc----------Ch------------hhhhhccccccchhhhhhHHHh--hh
Confidence 998774 678899999999998887652 11 2344556667888777665532 11
Q ss_pred CCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 002941 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (863)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i 612 (863)
++. | ..+++..+..
T Consensus 175 ~h~--------------------------------------------------------d--------v~~l~~~l~~-- 188 (417)
T KOG1359|consen 175 RHV--------------------------------------------------------D--------VFDLEHCLIS-- 188 (417)
T ss_pred ccc--------------------------------------------------------h--------hHHHHHHHHH--
Confidence 110 0 0112222211
Q ss_pred CCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC--cchhhhcCC--CCcEE--E
Q 002941 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGC--VPDIA--C 686 (863)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--~~a~e~~gv--~PDiv--t 686 (863)
...-+.-.|+.+.+ +++.|.+.| |++|.+|++|||.||.+||.| +-|.+|. .+..|.+|+ .+|++ |
T Consensus 189 --a~k~r~klv~TDg~-FSMDGdiaP----l~ei~~La~kYgaLlfiDecH-aTgf~G~tGrGt~E~~~vm~~vdiinsT 260 (417)
T KOG1359|consen 189 --ACKMRLKLVVTDGV-FSMDGDIAP----LEEISQLAKKYGALLFIDECH-ATGFFGETGRGTAEEFGVMGDVDIINST 260 (417)
T ss_pred --hhhheEEEEEecce-eccCCCccc----HHHHHHHHHhcCcEEEEeecc-cceeecCCCCChHHHhCCCCcceehhhh
Confidence 11346778999998 999999999 999999999999999999999 4556776 456778887 57776 8
Q ss_pred eccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHh-cChhhHHhHHHHHHHHHHHHHH
Q 002941 687 YGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWF-KDPQTNHNIIPERRILRELWDL 765 (863)
Q Consensus 687 ~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l-~~~~l~~~l~~~~~~l~~~l~~ 765 (863)
+||++||. .-|++.+++++.+.++..++ ++. ++.+-.|.....+.++++.+ .......+...+.+++++.+..
T Consensus 261 LgKAlGga--~GGyttgp~~li~llrqr~R--pyl--FSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~ 334 (417)
T KOG1359|consen 261 LGKALGGA--SGGYTTGPKPLISLLRQRSR--PYL--FSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEA 334 (417)
T ss_pred hhhhhcCC--CCCCccCChhHHHHHHhcCC--cee--ecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999841 23449999999999987543 344 44445666666677778765 4555667777777777775543
Q ss_pred HHHHHH-hcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe--------cCCEEEEecCCCCcH
Q 002941 766 ELIQQI-SSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP--------LGNVIYLMCGPCSSP 836 (863)
Q Consensus 766 ~l~~~~-~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p--------~g~~lr~~ppl~~t~ 836 (863)
...... +.|| +..+.+.+. +.+..+++.|+++|+++.. ...++|+..+..||+
T Consensus 335 aGftIsg~~hP----------I~pv~lGda--------~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~ 396 (417)
T KOG1359|consen 335 AGFTISGASHP----------ICPVMLGDA--------RLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTE 396 (417)
T ss_pred cCceecCCCCC----------ccceecccH--------HHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCH
Confidence 322211 1233 455556544 3788899999999999952 237899999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 837 eeid~~v~~L~~~l~~l 853 (863)
||||++++++.++.+-+
T Consensus 397 edid~~i~Af~~vgr~~ 413 (417)
T KOG1359|consen 397 EDIDRLIEAFSEVGRFL 413 (417)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999998887643
No 106
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=99.91 E-value=2.7e-23 Score=208.23 Aligned_cols=165 Identities=28% Similarity=0.391 Sum_probs=140.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCC-CCchhHHHhhccccccccCCCccccccchhhhh
Q 002941 41 QIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH-DSDSRFLFTKLPSLSLRRNFPSSLILSNSILFS 119 (863)
Q Consensus 41 ~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (863)
||+||++++|||+++++|+++|+ ++|++|+++||++++... +.|..++.+... .
T Consensus 1 fI~~t~~~~GKT~va~~L~~~l~-----~~g~~V~~~kP~~~~~~~~d~d~~~i~~~~~-~------------------- 55 (166)
T TIGR00347 1 FVTGTDTGVGKTVASSALAAKLK-----KAGYSVGYYKPVQTGIEKTNSDALLLQNISG-T------------------- 55 (166)
T ss_pred CeecCCCCccHHHHHHHHHHHHH-----HCCCcEEEEEeeeeCCCCCchHHHHHHHHcC-C-------------------
Confidence 79999999999999999999999 999999999999998653 344455443321 1
Q ss_pred hhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCChhHHHH
Q 002941 120 SLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIE 199 (863)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~~~~~ 199 (863)
.. +....+++.+..|.+|+.+...+ +.....+++.+
T Consensus 56 ------------~~-------------------------------~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~i~~ 91 (166)
T TIGR00347 56 ------------AL-------------------------------DWDEVNPYAFALPLSPHIAADQE-GRPIDLEELSK 91 (166)
T ss_pred ------------CC-------------------------------chhccCCeeeCCCCChHHHHHHh-CCCCCHHHHHH
Confidence 00 01124567888899999888776 66788888999
Q ss_pred HHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCC
Q 002941 200 TLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGY 279 (863)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~ 279 (863)
.++++.++| |++||||+||+.+|+....+++|+++.++.|||||++.+.+.++++..+++.++++|+
T Consensus 92 ~~~~l~~~~-------------D~viid~~g~~~~~~~~~~~~~dl~~~~~~~vilV~~~~~~~~~~~~~~~~~l~~~~~ 158 (166)
T TIGR00347 92 HLRTLEQKY-------------DFVLVEGAGGLCVPITEEYTTADLIKLLQLPVILVVRVKLGTINHTLLTVEHARQTGL 158 (166)
T ss_pred HHHHHHhcC-------------CEEEEEcCCccccCCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHHHCCC
Confidence 998877766 9999999999999988778999999999999999999999999999999999999999
Q ss_pred cEEEEEEc
Q 002941 280 DVVAVVFE 287 (863)
Q Consensus 280 ~v~gvi~n 287 (863)
++.|+|+|
T Consensus 159 ~i~gvv~N 166 (166)
T TIGR00347 159 TLAGVILN 166 (166)
T ss_pred CeEEEEeC
Confidence 99999998
No 107
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.90 E-value=4.4e-21 Score=217.67 Aligned_cols=345 Identities=15% Similarity=0.117 Sum_probs=224.3
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHhhcCCC
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKG 459 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~p~~ 459 (863)
++|.++||.+|+ .|+|++++ .++||..+|++.+++.++++++.+.. +..+..+...++++.|+++++.
T Consensus 31 ~~~~~~~~~~g~----~~i~l~~~---~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~- 102 (397)
T PRK06939 31 PQGADITVADGK----EVINFCAN---NYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGT- 102 (397)
T ss_pred CCCceEEecCCC----eEEEeecc---CccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCC-
Confidence 788999999999 99999874 45787678999999999998865422 1123456778899999998873
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~ 539 (863)
+..+++++|++|+..+++..++ .| ..||+.+..|.+. ..++...+..
T Consensus 103 --~~~i~~tsG~~a~~~~~~~l~~---------~g------------d~vi~~~~~~~~~-~~~~~~~~~~--------- 149 (397)
T PRK06939 103 --EDAILYSSCFDANGGLFETLLG---------KE------------DAIISDALNHASI-IDGVRLCKAK--------- 149 (397)
T ss_pred --CcEEEEcChHHHHHHHHHHhCC---------CC------------CEEEEEhhhhHHH-HHHHHhcCCc---------
Confidence 3566677889999998865421 12 4566666555443 2222221100
Q ss_pred cccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 002941 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (863)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~ 619 (863)
+ +.+|. .| .+.+++.++..+ ....+
T Consensus 150 -------------------~--~~~~~------------------------~d--------~~~l~~~i~~~~--~~~~~ 174 (397)
T PRK06939 150 -------------------R--YRYAN------------------------ND--------MADLEAQLKEAK--EAGAR 174 (397)
T ss_pred -------------------e--EEeCC------------------------CC--------HHHHHHHHHhhh--ccCCC
Confidence 0 00110 11 123344443210 01235
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc-cc-cccCCcchhhhcCC--CCcEE--EeccccCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGC--VPDIA--CYGKLLTG 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T-Gf-GRtG~~~a~e~~gv--~PDiv--t~sKgLgg 693 (863)
+.+|+++++ ++..|...+ +++|.++|++||++||+||+|. |+ ++.|. +....+++ .+|++ ++||+++|
T Consensus 175 ~~~v~~~~v-~~~~G~~~~----~~~l~~la~~~~~~li~De~~~~g~~~~~~~-~~~~~~~~~~~~~i~~~S~sK~~~g 248 (397)
T PRK06939 175 HKLIATDGV-FSMDGDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENGR-GTVEHFGVMDRVDIITGTLGKALGG 248 (397)
T ss_pred CeEEEEecC-cCCCCCcCC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC-CHHHHcCCCCCCcEEEEECHHHhCc
Confidence 788999997 888887544 8999999999999999999994 33 33333 23445565 46777 78999965
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
.++|++++++++++.+..... . ...+.+.+|..+++++++++.+++ +++.+++.++.+.+.+ .+.+
T Consensus 249 --~r~G~v~~~~~~~~~l~~~~~--~--~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~----~L~~--- 315 (397)
T PRK06939 249 --ASGGYTAGRKEVIDWLRQRSR--P--YLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFRE----GMTA--- 315 (397)
T ss_pred --cCceEEEeCHHHHHHHHHhCc--c--ccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHH---
Confidence 478999999999998864211 1 112233467778888899988754 2333444444444433 3322
Q ss_pred cCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------CCEEEEecCCCCcHHHHHHHHH
Q 002941 773 SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 773 ~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------g~~lr~~ppl~~t~eeid~~v~ 844 (863)
++. ..+.+.|.++.+.+... ....++++.|.++||.+.+. .+.+|+.++..+++++++++++
T Consensus 316 -~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~ 385 (397)
T PRK06939 316 -AGF-TLGPGEHPIIPVMLGDA--------KLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAID 385 (397)
T ss_pred -cCC-CcCCCCCCEEEEEECCH--------HHHHHHHHHHHHCCceEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHH
Confidence 221 11234566665554321 13567899999999988642 2579998888899999999999
Q ss_pred HHHHHHHHH
Q 002941 845 KLYQRLEEF 853 (863)
Q Consensus 845 ~L~~~l~~l 853 (863)
+|.++++++
T Consensus 386 ~L~~~~~~~ 394 (397)
T PRK06939 386 AFEKVGKEL 394 (397)
T ss_pred HHHHHHHHh
Confidence 999888764
No 108
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.90 E-value=7.1e-23 Score=234.47 Aligned_cols=172 Identities=12% Similarity=0.134 Sum_probs=133.2
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccCCCccccccch
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNS 115 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (863)
+|+.|||+||+||||||+||++|+++|+ ++ |++||| |++. .| +
T Consensus 237 ~~~~i~Iagt~Tg~GKT~vt~~L~~al~-----~~---v~~fK~---GpD~-id----------~--------------- 279 (476)
T PRK06278 237 KPKGIILLATGSESGKTFLTTSIAGKLR-----GK---VFVAKI---GPDV-RD----------I--------------- 279 (476)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHH-----hC---eEEEcC---CCCh-hh----------c---------------
Confidence 5889999999999999999999999998 55 999995 4211 11 0
Q ss_pred hhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCC-CCh
Q 002941 116 ILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGV-VGD 194 (863)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~-~~~ 194 (863)
...++.|+.|+||+.++..+ +.. +..
T Consensus 280 ----------------------------------------------------~p~~~~~~~~~sp~~a~n~~-~d~~~~~ 306 (476)
T PRK06278 280 ----------------------------------------------------VPSLYLLREKMTKYNSIKIG-DRGWSDV 306 (476)
T ss_pred ----------------------------------------------------CCcceecccccCChHHHhhc-CCcccCH
Confidence 02357889999999999976 443 455
Q ss_pred hHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCC---CcHhHHhhhcCCCEEEEECCCCCcHHHHHHHH
Q 002941 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSG---SLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (863)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~---~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~ 271 (863)
++.++.+.. . .+|++|||||||+++|+..+ .+++|||+.+++|||||++.++|+|++++.++
T Consensus 307 ~~~~~~~~~--~-------------~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~~PVILV~~~~~g~i~~~~~~i 371 (476)
T PRK06278 307 EEFLEFVKN--S-------------DYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALGFPVYIVSSCSKSGIEGAFVES 371 (476)
T ss_pred HHHHHHHHh--c-------------CCCEEEEECCCCcccccCCCCccccHHHHHHHhCCCEEEEEcCCCChHHHHHHHH
Confidence 555554322 1 24999999999999995433 58899999999999999999999999998854
Q ss_pred ----HHHHhCCCcEEEEEEcCCCCC-CHHHHHHhhc-CCCCeeecCC
Q 002941 272 ----ESLKLRGYDVVAVVFEDHGLV-NEVPLMSYLR-NRVPVLVLPP 312 (863)
Q Consensus 272 ----~~~~~~~~~v~gvi~n~~~~~-~~~~~~~~~~-~~~pvl~~p~ 312 (863)
+++++++++|+|||+|++... ....+++.++ +++||||.|+
T Consensus 372 ~G~~~~l~~~~i~i~GVIlN~v~~~~~~~~~~~~le~~gvpVLG~~~ 418 (476)
T PRK06278 372 MAYYSLLKKMGVKVEGIILNKVYNMEIFEKVKKIAENSNINLIGVGK 418 (476)
T ss_pred HHHHHHHhcCCCcEEEEEEECCCcHHHHHHHHHHHHhcCCCEEEecc
Confidence 567778999999999999543 3344455443 5999999755
No 109
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.90 E-value=4.4e-21 Score=214.33 Aligned_cols=335 Identities=13% Similarity=0.092 Sum_probs=220.0
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccC----CCCCChHHHHHHHHHHhhcCCC
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKG 459 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~----~~~~~~~~~eLae~L~~~~p~~ 459 (863)
+.|.++. .+|+ +|+|+.++ +++|++.+|+|++|+.+++.+++.... ..+.++...++.++|+++.+.
T Consensus 6 ~~~~~~~-~~g~----~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~- 76 (360)
T TIGR00858 6 GPGPEVV-RDGR----RLLNFSSN---DYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGT- 76 (360)
T ss_pred CCCCeEE-ECCc----eEEecccC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC-
Confidence 5667887 6888 99999996 578976789999999999988654211 112356788899999998873
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~ 539 (863)
+..+++++|++++..+++.+. . .| ..|+. ...+|+....++...+..
T Consensus 77 --~~~i~~~~G~~~~~~~l~~~~-----~----~g------------d~v~~-~~~~~~~~~~~~~~~g~~--------- 123 (360)
T TIGR00858 77 --EAALLFSSGYLANVGVISALV-----G----KG------------DLILS-DALNHASLIDGCRLSGAR--------- 123 (360)
T ss_pred --CCEEEECchHHHHHHHHHHhC-----C----CC------------CEEEE-EccccHHHHHHHHhcCCc---------
Confidence 457777889999988776541 0 11 34554 455666554443322100
Q ss_pred cccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 002941 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (863)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~ 619 (863)
+..++. .| .+.+++.+.. ....+
T Consensus 124 -------------------~~~~~~--------------------------~d--------~~~l~~~~~~----~~~~~ 146 (360)
T TIGR00858 124 -------------------VRRYRH--------------------------ND--------VEHLERLLEK----NRGER 146 (360)
T ss_pred -------------------eEEecC--------------------------CC--------HHHHHHHHHH----cccCC
Confidence 000000 11 1334555542 11134
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC--cchhhhcCCCCc-----EEEeccccC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVPD-----IACYGKLLT 692 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--~~a~e~~gv~PD-----ivt~sKgLg 692 (863)
.++++++++ ++..|...+ +++|.++|++||+++|+||+|+ +|+.+. ......+++.|| +.+++|+++
T Consensus 147 ~~~v~~~~~-~~~~G~~~~----~~~i~~l~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~ 220 (360)
T TIGR00858 147 RKLIVTDGV-FSMDGDIAP----LPQLVALAERYGAWLMVDDAHG-TGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALG 220 (360)
T ss_pred CeEEEEeCC-ccCCCCCcC----HHHHHHHHHHcCcEEEEECccc-ccCcCCCCCchHHhcCCCccCCcEEEEechhhhh
Confidence 688899997 888886665 8999999999999999999995 555543 223455677665 558899886
Q ss_pred CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcCh-hhHHhHHHHHHHHHHHHHHHHHHHH
Q 002941 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDP-QTNHNIIPERRILRELWDLELIQQI 771 (863)
Q Consensus 693 gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~-~l~~~l~~~~~~l~~~l~~~l~~~~ 771 (863)
+ +.|++++++++++.+..... .+..+.+.++.+++++.++++.++.. ...+++.++.+++.+.| .
T Consensus 221 ~---~gG~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L----~--- 286 (360)
T TIGR00858 221 S---YGAYVAGSQALIDYLINRAR----TLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGL----E--- 286 (360)
T ss_pred c---cCcEEEcCHHHHHHHHHhCc----cceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH----H---
Confidence 4 33678899999888753211 12234456788888999999877542 33344444444444432 2
Q ss_pred hcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------CCEEEEecCCCCcHHHHHHHH
Q 002941 772 SSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 772 ~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------g~~lr~~ppl~~t~eeid~~v 843 (863)
+++. .-....|.++.+.+... ....++.+.|.++||++.+. ++.+|++++..++++++++++
T Consensus 287 -~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l 356 (360)
T TIGR00858 287 -ALGF-TLMPSCTPIVPVIIGDN--------ASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLA 356 (360)
T ss_pred -HcCC-ccCCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHH
Confidence 2221 11234566777776432 12567899999999999642 258999999889999999999
Q ss_pred HHHH
Q 002941 844 LKLY 847 (863)
Q Consensus 844 ~~L~ 847 (863)
++|+
T Consensus 357 ~~l~ 360 (360)
T TIGR00858 357 EALK 360 (360)
T ss_pred HhhC
Confidence 8763
No 110
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=99.89 E-value=4.5e-23 Score=238.59 Aligned_cols=207 Identities=15% Similarity=0.071 Sum_probs=140.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccc----cCCCC----CCchhHHHhhccccccccCCCcccc
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ----TGYPH----DSDSRFLFTKLPSLSLRRNFPSSLI 111 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~----~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (863)
|||+||+|+||||+||++|++.|+ ++|++|+||||+. ++... .++...++..+.++
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~-----~~G~~v~~fKp~~~~~~s~~~~~~~e~~~a~~~qa~a~~~----------- 64 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILA-----RRGYRVAPFKSQNMSLNSFVTKEGGEIAIAQATQALAAGI----------- 64 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHH-----hCCCeEEEECCcccccCccccCCCchhHHHHHHHHHhCCC-----------
Confidence 699999999999999999999999 9999999999984 22211 12333333332222
Q ss_pred ccchhhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhc-CC
Q 002941 112 LSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERES-GG 190 (863)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~-~~ 190 (863)
.+...++|..|+|.. + ..........|++|+.+.+... +.
T Consensus 65 ------------------~~~~~~nPv~lk~~~---~------------------~~s~~i~~g~~~~~~~a~~~~~~~~ 105 (475)
T TIGR00313 65 ------------------EPSVHMNPILLKPKG---N------------------FTSQVIVHGRAVGDMNYQEYYKNKV 105 (475)
T ss_pred ------------------CchhccCCEEeCcCC---C------------------CcCcEEEcCcccCcCCHHHHhhhhh
Confidence 011122333333220 0 0001122223455655533220 33
Q ss_pred CCChhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccc--cCCCCCcHhHHhhhcCCCEEEEECCCCC-cHHHH
Q 002941 191 VVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVAS--PGPSGSLQCDLYRPFRLPGILVGDGRLG-GISGT 267 (863)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~--p~~~~~~~~dla~~l~~pvilV~~~~~g-~i~~~ 267 (863)
.+.+++|.+.+.++.+++ |++|||||||+++ +...+.+++++|+.+++|||||++.++| .++++
T Consensus 106 ~~~~~~i~~~~~~l~~~~-------------D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~apVILV~d~~~g~~~a~i 172 (475)
T TIGR00313 106 DFFLKAIKESLEILAREY-------------DYVVIEGAGSPAEINLLKRDLANMRIAELANADAILVADIDRGGVFASI 172 (475)
T ss_pred HHHHHHHHHHHHHHHhcC-------------CEEEEECCCCccccccCcCCchHHHHHHHhCCCEEEEEeCCccHHHHHH
Confidence 567888988998877766 9999999999987 3446788999999999999999999888 45777
Q ss_pred HHHHHHHHhC-CCcEEEEEEcCCCCC------CHHHHHHhhcCCCCeee-cCCCCCC
Q 002941 268 ISAYESLKLR-GYDVVAVVFEDHGLV------NEVPLMSYLRNRVPVLV-LPPLPQD 316 (863)
Q Consensus 268 ~~~~~~~~~~-~~~v~gvi~n~~~~~------~~~~~~~~~~~~~pvl~-~p~~~~~ 316 (863)
+.+++.+... +..++|||+|++..+ +.+.++++ .++|||| +|+.+.+
T Consensus 173 ~gt~~~l~~~~~~~i~GvIlNrv~~~~~~~~~~~~~l~e~--~gipvLG~ip~~~~l 227 (475)
T TIGR00313 173 YGTLKLLPENWRKLIKGIVINKFRGNVDVLKSGIEKLEEL--TGIPVLGVLPYDENL 227 (475)
T ss_pred HHHHHHhChhhcCceEEEEEeccCCcHHHHHHHHHHHHHh--hCCCEEEEecCCCcC
Confidence 8888887654 368999999998542 12233443 5899999 9998776
No 111
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.89 E-value=1.7e-20 Score=213.02 Aligned_cols=345 Identities=14% Similarity=0.116 Sum_probs=225.4
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccc-cCCC---CCChHHHHHHHHHHhhcCCC
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-MFPE---NVYEPALECAELLLQGVGKG 459 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~-~~~~---~~~~~~~eLae~L~~~~p~~ 459 (863)
++|.++++.+|+ +|+|+.++ .++|+..+|++++++.+++.+++.. .... +..+...+|.++|+++++.
T Consensus 27 ~~~~~~~~~~g~----~~i~~~~~---~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~- 98 (393)
T TIGR01822 27 PQGADIRVADGR----EVLNFCAN---NYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLGT- 98 (393)
T ss_pred CCCceEEecCCc----eEEEeeCC---CccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCC-
Confidence 566788888888 99999985 6788867999999999999886432 1111 3356778999999999984
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~ 539 (863)
+.++.++||++|+..++...++ .| ..||+-+. +|.....++.+.+...
T Consensus 99 --~~~ii~~~~~~a~~~~~~~l~~---------~g------------d~vi~~~~-~~~s~~~~~~~~~~~~-------- 146 (393)
T TIGR01822 99 --EDTILYASCFDANGGLFETLLG---------AE------------DAIISDAL-NHASIIDGVRLCKAKR-------- 146 (393)
T ss_pred --CcEEEECchHHHHHHHHHHhCC---------CC------------CEEEEecc-ccHHHHHHHHhcCCce--------
Confidence 4667678999999976654310 11 45666554 4444333222211000
Q ss_pred cccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 002941 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (863)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~ 619 (863)
+.++ ..| .+.+++.+.+.. ....+
T Consensus 147 ----------------------~~~~------------------------~~d--------~~~l~~~i~~~~--~~~~~ 170 (393)
T TIGR01822 147 ----------------------YRYA------------------------NND--------MADLEAQLKEAR--AAGAR 170 (393)
T ss_pred ----------------------EEeC------------------------CCC--------HHHHHHHHHhhh--hcCCC
Confidence 0000 011 133445554310 11225
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc--chhhhcCC--CCcEE--EeccccCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGC--VPDIA--CYGKLLTG 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~--~a~e~~gv--~PDiv--t~sKgLgg 693 (863)
...|+++++ +++.|.+.+ +++|.++|++||++||+||+| ++|..|.. +..+..++ .+|++ +++|+++|
T Consensus 171 ~~~v~~~~v-~~~tG~~~~----l~~i~~la~~~~~~li~De~~-~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g 244 (393)
T TIGR01822 171 HRLIATDGV-FSMDGVIAP----LDEICDLADKYDALVMVDECH-ATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGG 244 (393)
T ss_pred ceEEEEeCC-ccCCCCcCC----HHHHHHHHHHcCCEEEEECCc-cccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhC
Confidence 678999997 899998876 899999999999999999999 45544431 23344555 36777 68999975
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
+++|++++++++++.+..... . +.++.+.+|..+++++++|+.+++ ++..+++.++.+++.+.| .+.
T Consensus 245 --~r~G~~~~~~~~~~~l~~~~~--~--~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L----~~~-- 312 (393)
T TIGR01822 245 --ASGGFTTARKEVVELLRQRSR--P--YLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRERM----EAA-- 312 (393)
T ss_pred --CCcEEEEeCHHHHHHHHHhCc--c--ceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH----HHc--
Confidence 578999999999998764211 1 112223467777888999987753 334455555555544433 221
Q ss_pred cCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------C-CEEEEecCCCCcHHHHHHHHH
Q 002941 773 SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 773 ~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g-~~lr~~ppl~~t~eeid~~v~ 844 (863)
.... ..+.+.++.+.+.+. ..+..+++.|.++||++... + ..+|+++++.+|++||+++++
T Consensus 313 g~~~---~~~~~~~~~i~~~~~--------~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~ 381 (393)
T TIGR01822 313 GFDI---KPADHPIIPVMLYDA--------VLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISAAHTEEQLDRAVE 381 (393)
T ss_pred CCCC---CCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHH
Confidence 1211 122455666655431 13567889999999988631 2 578999999999999999999
Q ss_pred HHHHHHHHH
Q 002941 845 KLYQRLEEF 853 (863)
Q Consensus 845 ~L~~~l~~l 853 (863)
+|.++++++
T Consensus 382 ~l~~~~~~~ 390 (393)
T TIGR01822 382 AFTRIGREL 390 (393)
T ss_pred HHHHHHHHh
Confidence 999887654
No 112
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=99.88 E-value=3.4e-22 Score=226.71 Aligned_cols=174 Identities=17% Similarity=0.180 Sum_probs=130.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccCCCccccccchh
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (863)
|++|||+||+|++|||+||+||+++|+ ++|.+|.+||| |++. .|..++. .+.+.+++|
T Consensus 1 m~~~~i~~~~s~~GKT~vt~gl~~~l~-----~~g~~v~~~K~---Gpd~-iD~~~~~-~~~g~~~~n------------ 58 (433)
T PRK13896 1 MKGFVLGGTSSGVGKTVATLATIRALE-----DAGYAVQPAKA---GPDF-IDPSHHE-AVAGRPSRT------------ 58 (433)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHH-----HCCCeeEEEee---CCCC-CCHHHHH-HHhCCCccc------------
Confidence 678999999999999999999999999 99999999996 6543 4554443 334442211
Q ss_pred hhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCChhH
Q 002941 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSK 196 (863)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~~ 196 (863)
.+||.. ..+.
T Consensus 59 ----------------------------------------------------ld~~~~------------------~~~~ 68 (433)
T PRK13896 59 ----------------------------------------------------LDPWLS------------------GEDG 68 (433)
T ss_pred ----------------------------------------------------CChhhC------------------CHHH
Confidence 223322 1233
Q ss_pred HHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCc--HHHHHHHHHHH
Q 002941 197 VIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG--ISGTISAYESL 274 (863)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~--i~~~~~~~~~~ 274 (863)
+.+.+.+ .. +|++||||+||++++ ...+++|||+.+++|||||++.++|+ ++++++++..+
T Consensus 69 i~~~~~~--~~-------------~d~~vIEG~gGl~dg--~~~s~adla~~l~~PviLVv~~~~g~~s~aa~l~g~~~~ 131 (433)
T PRK13896 69 MRRNYYR--GE-------------GDICVVEGVMGLYDG--DVSSTAMVAEALDLPVVLVVDAKAGMESVAATALGFRAY 131 (433)
T ss_pred HHHHHHh--hc-------------CCEEEEECCCccccC--CCCCHHHHHHHHCCCEEEEEcCcccHHHHHHHHHHHHHH
Confidence 4444332 11 499999999999976 34789999999999999999999995 67778887444
Q ss_pred Hh---CCCcEEEEEEcCCCCC-CHHHHHHhhcCCCCeee-cCCCCCCCch
Q 002941 275 KL---RGYDVVAVVFEDHGLV-NEVPLMSYLRNRVPVLV-LPPLPQDSSN 319 (863)
Q Consensus 275 ~~---~~~~v~gvi~n~~~~~-~~~~~~~~~~~~~pvl~-~p~~~~~~~~ 319 (863)
.. ++++|+|||+|++... +.+.+++.+..++||+| ||..+++.-+
T Consensus 132 ~~~~~~~~~i~GvIlN~~~~~~h~~~l~~~~~~~i~vlG~lP~~~~~~~~ 181 (433)
T PRK13896 132 ADRIGRDIDVAGVIAQRAHGGRHADGIRDALPDELTYFGRIPPRDDLEIP 181 (433)
T ss_pred HHhccCCCcEEEEEEECCCcHHHHHHHHHhhhhcCceeEecccCCCCCCC
Confidence 43 5899999999999654 45566777666899999 9998887643
No 113
>PLN02483 serine palmitoyltransferase
Probab=99.88 E-value=8.6e-20 Score=212.94 Aligned_cols=353 Identities=14% Similarity=0.100 Sum_probs=225.0
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCC-CcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHH
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDAT-LQIELARDMGYTAARFGHVM----FPENVYEPALECAE 450 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~-~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae 450 (863)
..++++.+....+-+...|+. ++.+++.| +++||.+ .++.+.+++.+++++++... ....+++.+.+|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~--~~~~n~~s---~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~ 153 (489)
T PLN02483 79 FDVVERVSNDNNKTLKRTTKT--RRCLNLGS---YNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEE 153 (489)
T ss_pred EEEEEeecCCCCceEEecCCC--ceEEEeec---CCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHH
Confidence 345666544433333222321 38899998 8999985 36788999999999987532 11235788999999
Q ss_pred HHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC
Q 002941 451 LLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS 530 (863)
Q Consensus 451 ~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~ 530 (863)
+|+++++. +..+++++|+.+|..++...+. .| ..|| .+..+|.+...++...|..
T Consensus 154 ~lA~~~g~---~~ai~~~~G~~an~~~i~al~~---------~G------------d~Vi-~d~~~h~s~~~~~~~~Ga~ 208 (489)
T PLN02483 154 LVARFVGK---PAAIVFGMGYATNSTIIPALIG---------KG------------GLII-SDSLNHNSIVNGARGSGAT 208 (489)
T ss_pred HHHHHhCC---CcEEEECCHHHHHHHHHHHhCC---------CC------------CEEE-EcchhhHHHHHHHHHcCCe
Confidence 99999984 4556667899999877665411 11 3455 5555555544433332211
Q ss_pred CCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhc
Q 002941 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610 (863)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~ 610 (863)
...+|. +|. +++++.+++
T Consensus 209 ------------------------------v~~~~~------------------------~d~--------~~le~~l~~ 226 (489)
T PLN02483 209 ------------------------------IRVFQH------------------------NTP--------SHLEEVLRE 226 (489)
T ss_pred ------------------------------EEEEeC------------------------CCH--------HHHHHHHHh
Confidence 001110 111 223333332
Q ss_pred CCCC-----CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc--cccccCCcchhhhcCCCC-
Q 002941 611 NPGL-----KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT--GFWRLGVETTADLLGCVP- 682 (863)
Q Consensus 611 ~i~~-----~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T--GfGRtG~~~a~e~~gv~P- 682 (863)
.+.. ..+.....|++|++ .++.|.+.+ +++|.++|++||++||+||+|+ .+|++|.+ ..+++++.|
T Consensus 227 ~i~~~~p~t~~p~~k~livve~v-~s~~G~~~~----l~~I~~la~~~~~~livDEa~s~g~~G~~G~g-~~~~~~v~~~ 300 (489)
T PLN02483 227 QIAEGQPRTHRPWKKIIVIVEGI-YSMEGELCK----LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRG-VCELLGVDPA 300 (489)
T ss_pred hhhccccccccCCceEEEEECCC-CCCCCcccC----HHHHHHHHHHcCCEEEEECcCccCccCCCCCc-hHHhcCCCcc
Confidence 1111 11233568999998 899998876 9999999999999999999995 23445543 567778755
Q ss_pred --cEE--EeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCC--CccHHHHHHHHHHHHHhcCh-------hhH
Q 002941 683 --DIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSY--SAHALGCAAAAKSIKWFKDP-------QTN 749 (863)
Q Consensus 683 --Div--t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~--~~~pla~AAalAaL~~l~~~-------~l~ 749 (863)
|++ +|+|++++ +.|++++++++++.+... .++++| +.+|..++++.++|+++.++ +..
T Consensus 301 ~~dI~~~SfSKs~g~---~GG~i~~~~~li~~l~~~------~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~ 371 (489)
T PLN02483 301 DVDIMMGTFTKSFGS---CGGYIAGSKELIQYLKRT------CPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKL 371 (489)
T ss_pred cCcEEEEecchhccc---CceEEEcCHHHHHHHHHh------CccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHH
Confidence 666 89998862 235688999999998742 123333 45788888899999987522 122
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec--ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC----
Q 002941 750 HNIIPERRILRELWDLELIQQISSHRTVQRVV--ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---- 823 (863)
Q Consensus 750 ~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr--g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---- 823 (863)
++++++.+++.+ .| .+... .+. ..+.++++.+.... ....+++.|+++||++.+.+
T Consensus 372 ~~l~~~~~~l~~----~L----~~~G~--~v~~~~~sp~~~l~l~~~~--------~~~~~~~~Ll~~GI~v~~~~fp~~ 433 (489)
T PLN02483 372 AQIRENSNFFRS----EL----QKMGF--EVLGDNDSPVMPIMLYNPA--------KIPAFSRECLKQNVAVVVVGFPAT 433 (489)
T ss_pred HHHHHHHHHHHH----HH----HHCCC--cccCCCCCCEEEEEECCHH--------HHHHHHHHHHHCCcEEeeeCCCCC
Confidence 333443333333 32 22221 111 12356666654321 35578999999999998421
Q ss_pred ----CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 824 ----NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 824 ----~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
..+|++.++.+|+|+|++++++|+++++.+
T Consensus 434 p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~ 467 (489)
T PLN02483 434 PLLLARARICISASHSREDLIKALEVISEVGDLV 467 (489)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999988765
No 114
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=99.87 E-value=4.9e-22 Score=218.57 Aligned_cols=176 Identities=20% Similarity=0.219 Sum_probs=134.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccCCCccccccchhh
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSIL 117 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (863)
++|+|+||.+|+|||+||+||+++|+ ++|++|++|| .|++.. |. .+++.+++.++||
T Consensus 1 ~~vvIAg~~SG~GKTTvT~glm~aL~-----~rg~~VqpfK---vGPDYI-DP-~~H~~atG~~srN------------- 57 (451)
T COG1797 1 PAVVIAGTSSGSGKTTVTLGLMRALR-----RRGLKVQPFK---VGPDYI-DP-GYHTAATGRPSRN------------- 57 (451)
T ss_pred CceEEecCCCCCcHHHHHHHHHHHHH-----hcCCcccccc---cCCCcc-Cc-hhhhHhhCCccCC-------------
Confidence 46999999999999999999999999 9999999999 454433 33 4566667877666
Q ss_pred hhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCChhHH
Q 002941 118 FSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKV 197 (863)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~~~ 197 (863)
.++|. ...+.|
T Consensus 58 ---------------------------------------------------LD~~m------------------m~~~~v 68 (451)
T COG1797 58 ---------------------------------------------------LDSWM------------------MGEEGV 68 (451)
T ss_pred ---------------------------------------------------Cchhh------------------cCHHHH
Confidence 33444 344566
Q ss_pred HHHHHHHHHccccccccccccCCCceEEEeCCCcccccCC---CCCcHhHHhhhcCCCEEEEECCCCC--cHHHHHHHHH
Q 002941 198 IETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGP---SGSLQCDLYRPFRLPGILVGDGRLG--GISGTISAYE 272 (863)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~---~~~~~~dla~~l~~pvilV~~~~~g--~i~~~~~~~~ 272 (863)
.+.+.+..++ .|+.||||++|++.... +..+.+++|+.|++|||||++.+.- ++..++..+.
T Consensus 69 ~~~f~~~~~~-------------adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~S~AAiv~G~~ 135 (451)
T COG1797 69 RALFARAAAD-------------ADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSRSVAAIVKGFK 135 (451)
T ss_pred HHHHHHhcCC-------------CCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcchhHHHHHHHHHHH
Confidence 6666665555 49999999999998843 4678999999999999999997733 3334444444
Q ss_pred HHHhCCCcEEEEEEcCCC-CCCHHHHHHhhc--CCCCeee-cCCCCCCCch
Q 002941 273 SLKLRGYDVVAVVFEDHG-LVNEVPLMSYLR--NRVPVLV-LPPLPQDSSN 319 (863)
Q Consensus 273 ~~~~~~~~v~gvi~n~~~-~~~~~~~~~~~~--~~~pvl~-~p~~~~~~~~ 319 (863)
.+. ..+++.|||+|++. +.+.+.+++.++ +++||+| ||..+++.-+
T Consensus 136 ~fd-p~v~iaGVIlNrVgserH~~llr~Ale~~~gv~vlG~lpr~~~l~lp 185 (451)
T COG1797 136 HFD-PDVNIAGVILNRVGSERHYELLRDALEEYTGVPVLGYLPRDDDLELP 185 (451)
T ss_pred hcC-CCCceEEEEEecCCCHHHHHHHHHHhhhcCCCcEEEEecCCcccCCc
Confidence 443 46899999999995 456667777766 5799999 9999988644
No 115
>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]
Probab=99.86 E-value=2.7e-20 Score=199.39 Aligned_cols=320 Identities=16% Similarity=0.122 Sum_probs=234.4
Q ss_pred CCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhc
Q 002941 414 DATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH 489 (863)
Q Consensus 414 Gh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~ 489 (863)
|.+.||+|.+|+.+.+++++-.. ...+.+..+++|+.+|+++..+ +..+.++|=.-||+..|-..-+..
T Consensus 183 gms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK---~aALlFsSCfVANDstLftLak~l---- 255 (570)
T KOG1360|consen 183 GMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQK---EAALLFSSCFVANDSTLFTLAKKL---- 255 (570)
T ss_pred cccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcC---cceeeeeeeeeccchHHHHHHHHC----
Confidence 33379999999999999987653 2345678899999999998774 567777788999999987652211
Q ss_pred cccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhh
Q 002941 490 EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569 (863)
Q Consensus 490 G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~ 569 (863)
...+|..+.+.|.+.+..+.-++.+.+
T Consensus 256 ----------------pgcei~SD~gNHASMI~GIrns~v~K~------------------------------------- 282 (570)
T KOG1360|consen 256 ----------------PGCEIFSDEGNHASMIQGIRNSRVPKH------------------------------------- 282 (570)
T ss_pred ----------------CCcEEeccccchHHHHHHhhhcCCcce-------------------------------------
Confidence 156888899999987765543332211
Q ss_pred hhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHH
Q 002941 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE 649 (863)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrel 649 (863)
.|.. || .++|++.|+. ..+...-.|-+|.| +++.|.++| +++|.++
T Consensus 283 ----------------IFrH-ND--------~~hL~~lL~~----~~~svPKivAFEtV-hSM~Gavcp----leelcDv 328 (570)
T KOG1360|consen 283 ----------------IFRH-ND--------LDHLEQLLQS----SPKSVPKIVAFETV-HSMDGAVCP----LEELCDV 328 (570)
T ss_pred ----------------eecc-CC--------HHHHHHHHHh----CCCCCCceEEEeee-eccCCCcCC----HHHHHHH
Confidence 0111 33 3567777764 33444456778998 999999999 9999999
Q ss_pred HHHcCCeEEEecccccccccCCcch--hhhcCC--CCcEE--EeccccC--CCCCCceeeeccHHHHHhhhcCCccceee
Q 002941 650 CQNRKIPVIFDEVFTGFWRLGVETT--ADLLGC--VPDIA--CYGKLLT--GGVIPLAATLATNAVFDSFVGDSKLKALL 721 (863)
Q Consensus 650 c~~~gilLI~DEV~TGfGRtG~~~a--~e~~gv--~PDiv--t~sKgLg--gG~~Pigav~~~~~i~~~l~~~~~~~~~~ 721 (863)
++|||++-.+|||| ..|-.|..++ -|+-|+ +-||+ |+||++| ||| +..+.++.|.++... -.
T Consensus 329 ah~yGAiTFlDEVH-AVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVGGY-----IAat~~LvDmiRSyA----aG 398 (570)
T KOG1360|consen 329 AHKYGAITFLDEVH-AVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVGGY-----IAATRKLVDMIRSYA----AG 398 (570)
T ss_pred HHHhCceeeeehhh-hhccccCCCCCccccCCcchhhhhcccchhhhcccccce-----ehhhhhHHHHHHHhc----Cc
Confidence 99999999999999 5777887544 566677 56887 8999998 787 889999999998633 23
Q ss_pred cccCCCccHHHHHHHHHHHHHhcChh---hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCC
Q 002941 722 HGHSYSAHALGCAAAAKSIKWFKDPQ---TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA 798 (863)
Q Consensus 722 ~~~T~~~~pla~AAalAaL~~l~~~~---l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~ 798 (863)
+.+|.+..|.-++.|++++++++.++ ++..-+++..++++.|.+. ..|. +..-.-++.+.+.+..
T Consensus 399 FIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~------GiPV---i~~pSHIiPv~vgda~--- 466 (570)
T KOG1360|consen 399 FIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL------GIPV---IPNPSHIIPVRVGDAA--- 466 (570)
T ss_pred eEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc------CCcc---cCCCcceeeeeccCHH---
Confidence 66888999999999999999996432 3334445555665544322 2332 2233446666666542
Q ss_pred CCchHHHHHHHHHHH-HCCcEEEe-------cC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 799 GYGSLYAASLLKKLR-EDGVYMRP-------LG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 799 ~~~~~~~~~l~~~l~-e~GV~~~p-------~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.+..++..|+ ++|||+.. .| ..+|+.|.+.+|++.++.+++.|..+.+++.
T Consensus 467 -----l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v~ 526 (570)
T KOG1360|consen 467 -----LAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNEVG 526 (570)
T ss_pred -----HHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 5677788777 67999973 34 7999999999999999999999999888763
No 116
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=99.86 E-value=3.2e-21 Score=222.29 Aligned_cols=174 Identities=17% Similarity=0.177 Sum_probs=128.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccCCCccccccchhhh
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILF 118 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (863)
+|||+||+|+||||+||+||+++|+ ++|++|++||| |+ +..|..++... .+.+.+|
T Consensus 1 ~~~I~gT~t~vGKT~vt~~L~~~L~-----~~G~~V~~fK~---g~-d~~D~~~~~~~-~g~~~~~-------------- 56 (449)
T TIGR00379 1 RVVIAGTSSGVGKTTISTGIMKALS-----RRKLRVQPFKV---GP-DYIDPMFHTQA-TGRPSRN-------------- 56 (449)
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCceeEEcc---CC-CCCCHHHHHHH-hCCchhh--------------
Confidence 4899999999999999999999999 99999999998 33 22344443322 2221000
Q ss_pred hhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCChhHHH
Q 002941 119 SSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVI 198 (863)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~~~~ 198 (863)
.++|. .+.++|.
T Consensus 57 --------------------------------------------------ld~~~------------------~~~~~i~ 68 (449)
T TIGR00379 57 --------------------------------------------------LDSFF------------------MSEAQIQ 68 (449)
T ss_pred --------------------------------------------------CCccc------------------CCHHHHH
Confidence 12222 3467788
Q ss_pred HHHHHHHHccccccccccccCCCceEEEeCCCccc---ccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHH--
Q 002941 199 ETLGKCLRDGLESESESERGKMEILCIVETAGGVA---SPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES-- 273 (863)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~---~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~-- 273 (863)
+.+.++.+++ |++||||+||++ +|+....+++|||+.+++|||||++.+ ++++++.++..
T Consensus 69 ~~~~~~~~~~-------------D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~--~~~~t~~al~~~~ 133 (449)
T TIGR00379 69 ECFHRHSKGT-------------DYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ--RLSRSAAAIVLGY 133 (449)
T ss_pred HHHHHhcccC-------------CEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc--hHHHHHHHHHHHH
Confidence 8888876665 999999999999 677777899999999999999999987 56777766531
Q ss_pred -HHhCCCcEEEEEEcCCCCCC-HHHHHHhhc--CCCCeee-cCCCCCCCch
Q 002941 274 -LKLRGYDVVAVVFEDHGLVN-EVPLMSYLR--NRVPVLV-LPPLPQDSSN 319 (863)
Q Consensus 274 -~~~~~~~v~gvi~n~~~~~~-~~~~~~~~~--~~~pvl~-~p~~~~~~~~ 319 (863)
...++++|+|||+|++..+. ...+.+.++ .++||+| ||+.+++..+
T Consensus 134 ~~~~~~i~i~GvIlN~v~~~~~~~~~~~~i~~~~gipvLG~IP~~~~l~~p 184 (449)
T TIGR00379 134 RSFDPGVKLKGVILNRVGSERHLEKLKIAVEPLRGIPILGVIPRQQDLKVP 184 (449)
T ss_pred HhhCCCCCEEEEEEECCCCHHHHHHHHHHHHHhCCCCEEEEecCccccCCC
Confidence 22468999999999985432 222233332 5899999 9999887643
No 117
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.86 E-value=4.4e-21 Score=221.45 Aligned_cols=178 Identities=17% Similarity=0.212 Sum_probs=132.0
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccCCCccccccch
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNS 115 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (863)
.|+.|||+||+||||||+||++|+++|+ ++|++|++||| |+ +..|..++.. +.+.+.+|
T Consensus 2 ~m~~i~I~gt~s~~GKT~it~~L~~~L~-----~~G~~V~~fK~---Gp-d~~d~~~~~~-~~g~~~~~----------- 60 (451)
T PRK01077 2 RMPALVIAAPASGSGKTTVTLGLMRALR-----RRGLRVQPFKV---GP-DYIDPAYHTA-ATGRPSRN----------- 60 (451)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH-----hCCCCcceeec---CC-CcccHHHHHH-HhCCCccc-----------
Confidence 3788999999999999999999999999 99999999998 53 2344444332 22221100
Q ss_pred hhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCChh
Q 002941 116 ILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDS 195 (863)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~ 195 (863)
.++|. ...+
T Consensus 61 -----------------------------------------------------ld~~~------------------~~~~ 69 (451)
T PRK01077 61 -----------------------------------------------------LDSWM------------------MGEE 69 (451)
T ss_pred -----------------------------------------------------CCcee------------------CCHH
Confidence 12222 2356
Q ss_pred HHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccC---CCCCcHhHHhhhcCCCEEEEECCCCC--cHHHHHHH
Q 002941 196 KVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPG---PSGSLQCDLYRPFRLPGILVGDGRLG--GISGTISA 270 (863)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~---~~~~~~~dla~~l~~pvilV~~~~~g--~i~~~~~~ 270 (863)
.|.+.+.++.+++ |++||||+||++++. ....+++|||+.+++|||||++.+.. ++++++.+
T Consensus 70 ~v~~~~~~~~~~~-------------D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~~~~~~~a~l~~~ 136 (451)
T PRK01077 70 LVRALFARAAQGA-------------DIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDASGMAQSAAALVLG 136 (451)
T ss_pred HHHHHHHHhcccC-------------CEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCchHHHHHHHHHHH
Confidence 7778887766665 999999999999863 35678999999999999999998864 45555566
Q ss_pred HHHHHhCCCcEEEEEEcCCCCC-CHHHHHHhhc-CCCCeee-cCCCCCCCch
Q 002941 271 YESLKLRGYDVVAVVFEDHGLV-NEVPLMSYLR-NRVPVLV-LPPLPQDSSN 319 (863)
Q Consensus 271 ~~~~~~~~~~v~gvi~n~~~~~-~~~~~~~~~~-~~~pvl~-~p~~~~~~~~ 319 (863)
+..+ .++++++|||+|++..+ ....+.+.++ .++||+| ||+.+.+..+
T Consensus 137 ~~~~-~~~i~i~GvI~N~v~~~~~~~~l~~~l~~~gipvLG~IP~~~~l~~p 187 (451)
T PRK01077 137 FATF-DPDVRIAGVILNRVGSERHYQLLREALERCGIPVLGALPRDAALALP 187 (451)
T ss_pred HHHh-CCCCCEEEEEEECCCChhHHHHHHHHHHhcCCCEEEEeeCCcccCCC
Confidence 6665 45899999999999543 3344455553 5899999 9999887643
No 118
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=99.85 E-value=1.1e-20 Score=182.83 Aligned_cols=88 Identities=26% Similarity=0.362 Sum_probs=79.0
Q ss_pred ceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCC------CHH
Q 002941 222 ILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV------NEV 295 (863)
Q Consensus 222 d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~------~~~ 295 (863)
|++|||||||+++|+..+.+++|+|+.+++|+|+|++.++|++||++.+++.++.+|+.+.|+|.|+.... +.+
T Consensus 40 d~vliEGaGg~~~p~~~~~~~~d~~~~~~~~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~~~~~~~ 119 (134)
T cd03109 40 DFVLVEGAGGLCVPLKEDFTNADVAKELNLPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKEGLATLNVE 119 (134)
T ss_pred CEEEEECCCccccCCCCCCCHHHHHHHhCCCEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCccchhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987432 244
Q ss_pred HHHHhhcCCCCeee-cC
Q 002941 296 PLMSYLRNRVPVLV-LP 311 (863)
Q Consensus 296 ~~~~~~~~~~pvl~-~p 311 (863)
.+.+. .++|++| +|
T Consensus 120 ~i~~~--~gip~LG~IP 134 (134)
T cd03109 120 TIERL--TGIPVLGIVP 134 (134)
T ss_pred HHHHh--cCCCEEEeCC
Confidence 45555 5899999 76
No 119
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.84 E-value=9.8e-19 Score=194.90 Aligned_cols=329 Identities=13% Similarity=0.060 Sum_probs=208.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE 475 (863)
.||.|++ +.+||+.+||+|.+|++++++++.+.. ......+...++.+.|+++++. +..++++||++++.
T Consensus 2 ~~~~~~~---~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~---~~~iv~~sg~~a~~ 75 (349)
T cd06454 2 KVLNFCS---NDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGK---EAALVFSSGYAAND 75 (349)
T ss_pred Cceeccc---CCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCC---CCEEEeccHHHHHH
Confidence 6888887 899999889999999999999865421 1123577888999999999874 45788889999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.+++.+.. .| ..|++. ..+|+....++...+..
T Consensus 76 ~~~~~~~~---------~g------------d~Vl~~-~~~~~~~~~~~~~~g~~------------------------- 108 (349)
T cd06454 76 GVLSTLAG---------KG------------DLIISD-SLNHASIIDGIRLSGAK------------------------- 108 (349)
T ss_pred HHHHHhcC---------CC------------CEEEEe-hhhhHHHHHHHHHcCCc-------------------------
Confidence 88865520 12 345554 44566543322211100
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
...+|. .| .+.+++.+.+. .++.+.++|+++++ ++..|.
T Consensus 109 -----~~~~~~------------------------~~--------~~~le~~i~~~---~~~~~~~~v~~~~~-~~~tG~ 147 (349)
T cd06454 109 -----KRIFKH------------------------ND--------MEDLEKLLREA---RRPYGKKLIVTEGV-YSMDGD 147 (349)
T ss_pred -----eEEecC------------------------CC--------HHHHHHHHHHh---hccCCCeEEEEecc-ccCCCC
Confidence 000110 01 12344444421 11356788999997 888897
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcC---CCCcEE--EeccccCCCCCCceeeeccHHHHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLG---CVPDIA--CYGKLLTGGVIPLAATLATNAVFD 709 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~g---v~PDiv--t~sKgLggG~~Pigav~~~~~i~~ 709 (863)
..+ +++|.++|++||+++|+||++ ++|..+..+ ....+. ..+|++ +++|.++. +.|++++++++++
T Consensus 148 ~~~----~~~i~~~~~~~~~~livD~a~-~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~---~gG~i~~~~~~~~ 219 (349)
T cd06454 148 IAP----LPELVDLAKKYGAILFVDEAH-SVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA---VGGYIAGSKELID 219 (349)
T ss_pred ccC----HHHHHHHHHHcCCEEEEEccc-cccccCCCCCChhhhccccccCcEEEeechhhhcc---cCCEEECCHHHHH
Confidence 765 899999999999999999999 455443211 111222 245765 67898874 3467888999888
Q ss_pred hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEE
Q 002941 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAI 789 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~i 789 (863)
.+..... .+..+.+.++..++++.++|+.+++ .++..+....+.+.+.+.+.+. ..+.+ ...+.++..
T Consensus 220 ~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~l~~~l~~~--g~~~~---~~~~~~~~~ 287 (349)
T cd06454 220 YLRSYAR----GFIFSTSLPPAVAAAALAALEVLQG---GPERRERLQENVRYLRRGLKEL--GFPVG---GSPSHIIPP 287 (349)
T ss_pred HHHHhch----hhhccCCCCHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhc--CCccc---CCCCCcEEE
Confidence 7764211 1233446788899999999998765 1223333344444443333221 12211 122333222
Q ss_pred EEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
....+. ....++.+.|.++||.+.+. ++.+|+.++...+++++++++++|+++
T Consensus 288 ~~~~~~-------~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 288 LIGDDP-------AKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred EeCCCh-------HHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 222111 13567899999999999752 368999988889999999999999764
No 120
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=99.83 E-value=5e-20 Score=222.39 Aligned_cols=178 Identities=16% Similarity=0.120 Sum_probs=135.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccCCCccccccchh
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (863)
|++|||+||+|++|||+||+||+++|+ ++|++|+|||||++++. +. ...... +
T Consensus 2 ~k~l~I~~T~t~~GKT~vslgL~~~L~-----~~G~~Vg~fKPi~~~p~--~~-~~~~~~---~---------------- 54 (684)
T PRK05632 2 SRSIYLAPTGTGVGLTSVSLGLMRALE-----RKGVKVGFFKPIAQPPL--TM-SEVEAL---L---------------- 54 (684)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHH-----hCCCeEEEeCCcccCCC--CH-HHHHHH---H----------------
Confidence 467999999999999999999999999 99999999999998621 00 000000 0
Q ss_pred hhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCChhH
Q 002941 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSK 196 (863)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~~ 196 (863)
... .....+++
T Consensus 55 --------------------------------------------------------------------~~~-~~~~~~~~ 65 (684)
T PRK05632 55 --------------------------------------------------------------------ASG-QLDELLEE 65 (684)
T ss_pred --------------------------------------------------------------------hcc-CChHHHHH
Confidence 000 12245678
Q ss_pred HHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCc----HHHHHHHHH
Q 002941 197 VIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG----ISGTISAYE 272 (863)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~----i~~~~~~~~ 272 (863)
+++.|+++.+++ |++||||++|.........+|+|||+.|++|||||++.+.++ ++++..+.+
T Consensus 66 I~~~~~~l~~~~-------------D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~~~si~d~~~~i~~~~~ 132 (684)
T PRK05632 66 IVARYHALAKDC-------------DVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGGNDTPEELAERIELAAS 132 (684)
T ss_pred HHHHHHHhccCC-------------CEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCCCCChHHHHHHHHHHHH
Confidence 888888776665 999999998777655567789999999999999999999887 467778888
Q ss_pred HHH-hCCCcEEEEEEcC--CCCCCHHHHHHhh-------------------cCCCCeee-cCCCCCCCchhhhh
Q 002941 273 SLK-LRGYDVVAVVFED--HGLVNEVPLMSYL-------------------RNRVPVLV-LPPLPQDSSNDLME 323 (863)
Q Consensus 273 ~~~-~~~~~v~gvi~n~--~~~~~~~~~~~~~-------------------~~~~pvl~-~p~~~~~~~~~~~~ 323 (863)
.+. .++.+++|||+|+ +..+....+.+.+ ..++|++| ||+.+.+.++++.+
T Consensus 133 ~l~~~~~~~v~GVIvNr~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~LG~IP~d~~L~~~t~~~ 206 (684)
T PRK05632 133 SFGGAKNANILGVIINKLNAPVDEQGRTRPDLSEIFDDSSKANVDPSKLFASSPLPLLGVVPWSPDLIAPRVID 206 (684)
T ss_pred HhccCCCCcEEEEEEECCCCCHHHHHHHHHHHHhhhccccccchhcchhhhcCCCceEEEccCccccCCCCHHH
Confidence 887 7889999999999 4433333333332 24799999 99999998774443
No 121
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.81 E-value=5.8e-18 Score=192.58 Aligned_cols=337 Identities=14% Similarity=0.041 Sum_probs=204.6
Q ss_pred cccccccCCCCCcHHHHHHHHHHHHhcc-cccC-----CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 406 ASWWTQGPDATLQIELARDMGYTAARFG-HVMF-----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 406 sg~~~~~lGh~~~p~V~~Ai~~q~~~~~-~~~~-----~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
++++....|| ++|++++++..|+ +.. +... ..+..+...+++++|+++++.+ .+.+.|+++|+++++.+++
T Consensus 23 ~~l~~g~~~~-~~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~-~~~v~~~~~g~~~~~~~~~ 99 (398)
T cd00613 23 SFLGSGTYKH-NPPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGMD-VANASLQDEATAAAEAAGL 99 (398)
T ss_pred ccccccccCC-cCcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCC-ccceeccCchHHHHHHHHH
Confidence 5566777899 8999999988887 321 1111 1223356778999999988743 3478888888888899988
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.++. . .++ .+.|.+...|||++..++...+... + . .+
T Consensus 100 ~~~~-~-------~~~-----------gd~Vl~~~~~h~~~~~~~~~~~~~~--g-----------~-----------~~ 136 (398)
T cd00613 100 AAIR-A-------YHK-----------RNKVLVPDSAHPTNPAVARTRGEPL--G-----------I-----------EV 136 (398)
T ss_pred HHHh-c-------ccC-----------CCEEEEcCccCcchHHHHHHhcccC--C-----------c-----------EE
Confidence 8831 1 111 3356667889999988777654210 0 0 01
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..+++++.. ..| .+.+++.+. +++++|++++. . ..|.+
T Consensus 137 ~~v~~~~~~---------------------~~d--------~~~l~~~i~--------~~t~~viv~~~-~-~~G~~--- 174 (398)
T cd00613 137 VEVPSDEGG---------------------TVD--------LEALKEEVS--------EEVAALMVQYP-N-TLGVF--- 174 (398)
T ss_pred EEeccCCCC---------------------CcC--------HHHHHHhcC--------CCeEEEEEECC-C-CCcee---
Confidence 112211000 001 234444442 35789999985 5 56776
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--ecccc---CCCCCCceeeeccHHHHHhhhcC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLL---TGGVIPLAATLATNAVFDSFVGD 714 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgL---ggG~~Pigav~~~~~i~~~l~~~ 714 (863)
.+++++|+++|++||++||+|++|+.....+.. ..+ .+|+++ ++|.+ |+|....|++++++++++.+...
T Consensus 175 ~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~---~~~--~~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~~~~~~~~~~ 249 (398)
T cd00613 175 EDLIKEIADIAHSAGALVYVDGDNLNLTGLKPP---GEY--GADIVVGNLQKTGVPHGGGGPGAGFFAVKKELVRFLPGR 249 (398)
T ss_pred cchHHHHHHHHHhcCCEEEEEeccccccCCCCh---HHc--CCCEEEeeccccCCCCCCCCCceeEEEEhhhhHhhCCCC
Confidence 367899999999999999999998532111111 112 479886 35654 44434556666777887765221
Q ss_pred C----------ccce-------------eecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHH
Q 002941 715 S----------KLKA-------------LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQI 771 (863)
Q Consensus 715 ~----------~~~~-------------~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~ 771 (863)
. .... ....++++++++.++++.++++.+.+++ .+++.++.+.+.+++.+.+.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g-~~~~~~~~~~~~~~l~~~L~~-- 326 (398)
T cd00613 250 LVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEG-LKEIAERAHLNANYLAKRLKE-- 326 (398)
T ss_pred eeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHh--
Confidence 0 0000 1124567888999999998888775433 344455555555555444333
Q ss_pred hcCCCeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe----cCCEEEEecCCCCcHHHHHHHHHHH
Q 002941 772 SSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----LGNVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 772 ~~~p~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p----~g~~lr~~ppl~~t~eeid~~v~~L 846 (863)
.+...... .....+.+.+... ....+.++++.|+++||++.. .++.+|++|++.+|+||||+++++|
T Consensus 327 --~~~~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~~L~~~gi~~~~~~~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 327 --VGGVLPFNGPFFHEFVLRLPPL------YGIRAEDLAKALIDGGFHAPTMYLPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred --cCCcccCCCCeeEEEEEEcCCc------chHHHHHHHHhhhhcCccccccccCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 22111000 1111223333211 012356789999999998865 3589999999999999999998864
No 122
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=99.78 E-value=1.5e-19 Score=202.75 Aligned_cols=218 Identities=17% Similarity=0.118 Sum_probs=151.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccCCCccccccchh
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (863)
|+++||.||.+++|||++++||||.|. ++|++|++|||-... -..++.. .-++|.+.|.
T Consensus 1 ~~~iMv~GT~S~~GKS~~~aglcRi~~-----~~G~~V~PFK~QNMs-----LNs~it~-----------~G~EIgraQ~ 59 (486)
T COG1492 1 MKAIMVQGTTSDAGKSFLVAGLCRILA-----RRGYRVAPFKSQNMS-----LNSAITP-----------GGGEIGRAQA 59 (486)
T ss_pred CCccEEEeccCCcchhhhhhhhhHHHH-----hcCCccCCCchhhcc-----cccEECC-----------CCcEEehhhh
Confidence 457999999999999999999999999 999999999983211 0000000 0123444444
Q ss_pred hhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHh-hhcCCCCChh
Q 002941 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAE-RESGGVVGDS 195 (863)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~-~~~~~~~~~~ 195 (863)
++.-.+.. .+...|+|..|+|+ ....+|.+. ...++.-..+.+ +.......+.
T Consensus 60 ~QA~Aa~i-----~p~v~mNPvLLKP~-------sd~~sQVIv--------------~G~~~G~~s~~~yy~~~~~~l~~ 113 (486)
T COG1492 60 LQALAAGI-----EPSVHMNPVLLKPC-------SDTGSQVIV--------------MGKDIGRKSAVEYYQEGKGLLWV 113 (486)
T ss_pred HHHHHcCC-----CCccccCCEEEeec-------CCCceEEEE--------------ecccccccChHHHHHHHHHHHHH
Confidence 43333222 57789999999999 233333332 222322222222 2113446777
Q ss_pred HHHHHHHHHHHccccccccccccCCCceEEEeCCCccccc-C-CCCCcHhHHhhhcCCCEEEEECCCCCcHHHHH-HHHH
Q 002941 196 KVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASP-G-PSGSLQCDLYRPFRLPGILVGDGRLGGISGTI-SAYE 272 (863)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p-~-~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~-~~~~ 272 (863)
.+.+.+.++.+++ |+|++||||+.+.. + ..+..|+.+|+..++|||||++...|++.+.+ -+++
T Consensus 114 ~v~~s~~~l~~~~-------------d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~dapvILV~DIdRGGvfAsl~GT~~ 180 (486)
T COG1492 114 AVKESLERLDREY-------------DVVVIEGAGSPAEINLRDRDIANMGVAEIADAPVILVGDIDRGGVFASLYGTLA 180 (486)
T ss_pred HHHHHHHHhhhcc-------------cEEEEecCCChhhcCcccccccceeeehhcCCCEEEEEeecccceeeeeeehhe
Confidence 8888888887776 99999999965544 3 26788999999999999999998886655544 5888
Q ss_pred HHHh-CCCcEEEEEEcCCC------CCCHHHHHHhhcCCCCeee-cCCCCCC
Q 002941 273 SLKL-RGYDVVAVVFEDHG------LVNEVPLMSYLRNRVPVLV-LPPLPQD 316 (863)
Q Consensus 273 ~~~~-~~~~v~gvi~n~~~------~~~~~~~~~~~~~~~pvl~-~p~~~~~ 316 (863)
.|.. ..-.|+|+|+|++- .+..+.|++. +++|||| +||.+..
T Consensus 181 lL~~~~r~~VkG~iINkFRGd~~ll~~gik~Le~~--tg~~vlGv~P~~~~~ 230 (486)
T COG1492 181 LLPESDRALVKGFIINKFRGDESLLDPGLKWLEEL--TGVPVLGVLPYLKDA 230 (486)
T ss_pred ecCHhHhcceeEEEEeeeCCCHHHHhhHHHHHHHh--hCCeeEeeccccccc
Confidence 7753 33579999999882 2345667776 8999999 9998886
No 123
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.77 E-value=3.9e-17 Score=182.74 Aligned_cols=303 Identities=12% Similarity=0.066 Sum_probs=191.1
Q ss_pred ccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcc
Q 002941 411 QGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (863)
Q Consensus 411 ~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G 490 (863)
++||..+||+|.+|+.+++++++ +.++.+.+|+++|+++.+.+ .+.+++++||++||..++.....
T Consensus 28 ~ylgl~~~~~~~~~~~~~~~~~~------g~~~~~~~Le~~lA~~~g~~-~e~ilv~~gg~~a~~~~~~al~~------- 93 (346)
T TIGR03576 28 DLTGLAGGFKIDEEDLELLETYV------GPAIFEEKVQELGREHLGGP-EEKILVFNRTSSAILATILALEP------- 93 (346)
T ss_pred ccccCCCChhHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHcCCC-cceEEEECCHHHHHHHHHHHhCC-------
Confidence 45666689999999999999984 35688999999999999843 37899999999999998875521
Q ss_pred ccccccCCCccccccccEEEE--ecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchh
Q 002941 491 VLVDFLGKDTTEKCIELKVLA--LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWL 568 (863)
Q Consensus 491 ~~tgr~~~~~~~~~~r~~II~--~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~ 568 (863)
.| ..|+. .+.-+|.+...++.+.+...+ .+
T Consensus 94 --~g------------d~Vli~~~d~p~~~s~~~~~~l~ga~~~------------------------------~~---- 125 (346)
T TIGR03576 94 --PG------------RKVVHYLPEKPAHPSIPRSCKLAGAEYF------------------------------ES---- 125 (346)
T ss_pred --CC------------CEEEECCCCCCCchhHHHHHHHcCCEEe------------------------------cc----
Confidence 12 45654 234566664444333221000 00
Q ss_pred hhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHH
Q 002941 569 YSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVK 648 (863)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lre 648 (863)
++ +++ ++. . .+..+|++++ .++.|.+. +..-+++|.+
T Consensus 126 ----------------------~~-----------l~~-l~~-----~-~~~~lIiitg--~s~~G~v~-~~~~L~~i~~ 162 (346)
T TIGR03576 126 ----------------------DE-----------LSE-LKK-----I-DGTSLVVITG--STMDLKVV-SEEDLKRVIK 162 (346)
T ss_pred ----------------------CC-----------HHH-Hhh-----C-cCceEEEEEC--CCCCCccc-CHHHHHHHHH
Confidence 01 111 211 0 1234567777 46777665 4677999999
Q ss_pred HHHHcCCeEEEecccccccccCCc--chhhhcCCCCcEE--EeccccCCCCCCceeeeccHHHHHhhhcCCccceeeccc
Q 002941 649 ECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGH 724 (863)
Q Consensus 649 lc~~~gilLI~DEV~TGfGRtG~~--~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~ 724 (863)
+|++||++||+||+|. .|..|.. +....++ +|++ +|||+|+| +.+|++++++++++.+.... ..+
T Consensus 163 la~~~~~~livDEAy~-~~~~~~~~~~~~~~~~--~divv~s~SKalaG--~r~G~v~~~~~li~~l~~~~------~~~ 231 (346)
T TIGR03576 163 QAKSKEAIVLVDDASG-ARVRRLYGQPPALDLG--ADLVVTSTDKLMDG--PRGGLLAGRKELVDKIKSVG------EQF 231 (346)
T ss_pred HHHHcCCEEEEECCcc-ccccccCCCCCHHHcC--CcEEEeccchhccc--cceEEEEeCHHHHHHHHHhh------cCc
Confidence 9999999999999994 4443321 1222334 5765 78998866 46889999999999987532 223
Q ss_pred CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHH
Q 002941 725 SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLY 804 (863)
Q Consensus 725 T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~ 804 (863)
.|+.+|.++++++++|+.+..+...+.++++.+.+.+.+ ..... . ....| |+.+.+.... .
T Consensus 232 ~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l--------~~~~~-~-~~~~~-f~~~~~~~~~--------~ 292 (346)
T TIGR03576 232 GLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLF--------DKLNV-E-RTPTG-FVIKGVEEEK--------L 292 (346)
T ss_pred ccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH--------HhCCC-C-cCCCe-EEEEeCCCCC--------H
Confidence 444688899999999986543333444444443333322 12211 1 12333 5555553211 1
Q ss_pred HHHHHHHHHHCCcEEEec------CCEEEEecCCCCcHH---HHHHHHHHHHHHH
Q 002941 805 AASLLKKLREDGVYMRPL------GNVIYLMCGPCSSPE---VCSQLLLKLYQRL 850 (863)
Q Consensus 805 ~~~l~~~l~e~GV~~~p~------g~~lr~~ppl~~t~e---eid~~v~~L~~~l 850 (863)
...+...|.++||+++|. ++.+||+ +...++ +.+.++++|++.+
T Consensus 293 ~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis--~~~~~~~~~~~~~~~~al~~~~ 345 (346)
T TIGR03576 293 IEIGLDLLRNYGIITITAVGMPGASKTLRFD--LAAKDAERIGDDYLVEAVKDSL 345 (346)
T ss_pred HHHHHHHHHhCCEEEeCCcccCCCCCeEEEE--EecChHHhcCHHHHHHHHHhcc
Confidence 234456677899999983 3678885 233443 6999999987764
No 124
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=99.74 E-value=1.5e-15 Score=171.46 Aligned_cols=324 Identities=16% Similarity=0.121 Sum_probs=201.5
Q ss_pred EEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhc----CCC-CCCeEEEeCChhhHHH
Q 002941 401 QFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGV----GKG-WASRAYFSDNGSTAIE 475 (863)
Q Consensus 401 ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~----p~~-~~~~v~f~~SGSeAvE 475 (863)
++|+..+ .+.++ ..|.+.+|+.+++...... ...|+..-..+|.+.+++++ +.+ ..+.+++++++++++.
T Consensus 28 ~i~l~~~--~~~~~--~~~~~~~al~~~l~~~~~~-~~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~ 102 (368)
T PRK03317 28 PVRLNTN--ENPYP--PSPALVADIAEAVAEAAAG-LNRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQ 102 (368)
T ss_pred eeEecCC--CCCCC--CCHHHHHHHHHHHhhhhhh-hccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHH
Confidence 4665543 33455 5799999999887542111 01222222334445555544 311 1357999999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.+++...+ .| ..|+...-+|++....+... +
T Consensus 103 ~~~~~~~~---------~g------------d~v~v~~P~y~~~~~~~~~~-g--------------------------- 133 (368)
T PRK03317 103 QLLQAFGG---------PG------------RTALGFVPSYSMHPIIARGT-H--------------------------- 133 (368)
T ss_pred HHHHHhcC---------CC------------CEEEEeCCChHHHHHHHHhc-C---------------------------
Confidence 88876521 12 46888888888754322111 0
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
...+++|... .+ .-| .+.+++.+.+ + ..-+.+++.| +++.|.
T Consensus 134 ---~~~~~~~~~~-----------------~~--~~d--------~~~l~~~~~~-----~-~~~~i~l~~p--~NPtG~ 175 (368)
T PRK03317 134 ---TEWVEGPRAA-----------------DF--TLD--------VDAAVAAIAE-----H-RPDVVFLTSP--NNPTGT 175 (368)
T ss_pred ---CeeEEcccCC-----------------CC--CCC--------HHHHHHHHhc-----c-CCCEEEEeCC--CCCCCC
Confidence 0011111000 00 011 1345555532 1 1223456666 789998
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhh
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSF 711 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l 711 (863)
..+ .++++++|+.++++||+||++++|++.|.....+..+..|+++ +|||++| .| +++|++++++++++.+
T Consensus 176 ~~~----~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~G-lRiG~~~~~~~~~~~l 250 (368)
T PRK03317 176 ALP----LDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAG-GRLGYLAAAPAVVDAL 250 (368)
T ss_pred CCC----HHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccch-hhhhhhhCCHHHHHHH
Confidence 876 6777888888899999999999998777655666666678877 8899997 68 8999999999999988
Q ss_pred hcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEE-E
Q 002941 712 VGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAI-E 790 (863)
Q Consensus 712 ~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~i-e 790 (863)
... ..+|..++++++++.++|+.. +.+.+.+.+ .+..++.+ .+.+.+++ +.-....|.++.+ .
T Consensus 251 ~~~--------~~~~~~s~~~~~a~~~~l~~~--~~~~~~~~~-~~~~~~~l----~~~L~~~g-~~~~~~~~~~~~~~~ 314 (368)
T PRK03317 251 RLV--------RLPYHLSAVTQAAARAALRHA--DELLASVAA-LRAERDRV----VAWLRELG-LRVAPSDANFVLFGR 314 (368)
T ss_pred Hhc--------CCCCCCCHHHHHHHHHHhhCH--HHHHHHHHH-HHHHHHHH----HHHHHHCC-CEeCCCCCcEEEEec
Confidence 742 136778899999999988743 223333322 22223322 33444443 2223445555443 2
Q ss_pred EccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 791 LQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 791 l~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+ . ....+.+.|+++||++.+.+ +.+|+. ..+++++++++++|+++++
T Consensus 315 ~--~---------~~~~~~~~l~~~Gv~v~~~~~~~~iRi~---~~~~~~~~~~~~~l~~~~~ 363 (368)
T PRK03317 315 F--A---------DRHAVWQGLLDRGVLIRDVGIPGWLRVT---IGTPEENDAFLAALAEVLA 363 (368)
T ss_pred c--C---------CHHHHHHHHHHCCEEEEeCCCCCeEEEe---cCCHHHHHHHHHHHHHHHH
Confidence 2 1 14678889999999999865 688887 3478899999999988764
No 125
>PRK06225 aspartate aminotransferase; Provisional
Probab=99.73 E-value=1.5e-15 Score=172.15 Aligned_cols=337 Identities=12% Similarity=0.110 Sum_probs=211.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCC-hHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~-~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~AL 478 (863)
+++++..+ .+.++ .+|.+.+|+.+++...... .+.. .-..+|.+.+++.++.. .+.++++++|++|+..++
T Consensus 29 ~~i~l~~~--~~~~~--~~~~~~~a~~~~~~~~~~~---~y~~~~g~~~lr~~ia~~l~~~-~~~v~~~~g~t~al~~~~ 100 (380)
T PRK06225 29 EMIWMGQN--TNHLG--PHEEVREAMIRCIEEGEYC---KYPPPEGFPELRELILKDLGLD-DDEALITAGATESLYLVM 100 (380)
T ss_pred CeEEccCC--CCCCC--CCHHHHHHHHHHHhcCCCC---CCCCCcchHHHHHHHHHhcCCC-CCcEEEeCCHHHHHHHHH
Confidence 56666643 34565 4799999999988753221 1222 23567888888887643 368999999999999998
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
+.... .| ..||..+.+|+.... .+...|.
T Consensus 101 ~~~~~---------~g------------d~vl~~~p~y~~~~~-~~~~~g~----------------------------- 129 (380)
T PRK06225 101 RAFLS---------PG------------DNAVTPDPGYLIIDN-FASRFGA----------------------------- 129 (380)
T ss_pred HHhcC---------CC------------CEEEEcCCCCcchHH-HHHHhCc-----------------------------
Confidence 86521 12 458888888764321 1111110
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
..+++|... . .+-+ .-| .+.+++.+. ++.-+.+++.| ++..|...
T Consensus 130 -~~~~v~~~~-------------~-~~~~--~~d--------~~~l~~~~~-------~~~~~v~l~~p--~NptG~~~- 174 (380)
T PRK06225 130 -EVIEVPIYS-------------E-ECNY--KLT--------PELVKENMD-------ENTRLIYLIDP--LNPLGSSY- 174 (380)
T ss_pred -eEEeecccc-------------c-cCCc--cCC--------HHHHHhhcC-------CCceEEEEeCC--CCCCCcCC-
Confidence 001111000 0 0000 001 123444332 22234556778 67788655
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc-CCCCcEEEeccccC-CCCCCceeeeccHHHHHhhhcCCc
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL-GCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVGDSK 716 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~-gv~PDivt~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~ 716 (863)
+.+.+++|.++|++||+++|+||++..|. .+........ ....++.+|||.+| .| +++|++++++++++.+...
T Consensus 175 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~i~~~s~SK~~g~~G-~RiG~i~~~~~l~~~~~~~-- 250 (380)
T PRK06225 175 TEEEIKEFAEIARDNDAFLLHDCTYRDFA-REHTLAAEYAPEHTVTSYSFSKIFGMAG-LRIGAVVATPDLIEVVKSI-- 250 (380)
T ss_pred CHHHHHHHHHHHHHCCcEEEEehhHHHHh-ccCCchhhcCCCCEEEEeechhhcCCcc-ceeEEEecCHHHHHHHHHH--
Confidence 67889999999999999999999998773 2322111110 11223558899997 67 8999999999999887641
Q ss_pred cceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC--eeEecccceEEEEEEccC
Q 002941 717 LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT--VQRVVALGTLCAIELQAA 794 (863)
Q Consensus 717 ~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~--v~~vrg~Gl~~~iel~~~ 794 (863)
...+++.+.++++++.++|+. ..++.+++.+..++..+.+. +.+++.+. +......|.++.+++...
T Consensus 251 -----~~~~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~~~~l~----~~L~~~~~~~~~~~~~~g~~~~~~~~~~ 319 (380)
T PRK06225 251 -----VINDLGTNVIAQEAAIAGLKV--KDEWIDRIRRTTFKNQKLIK----EAVDEIEGVFLPVYPSHGNMMVIDISEA 319 (380)
T ss_pred -----HhcccCCCHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHH----HHHHhCcCCccccCCCCCeEEEEEcccc
Confidence 234677788998888888864 23455565555555444443 33444332 222345677888887542
Q ss_pred CcCCCCchHHHHHHHHHHHHCCcEEEec-------C-CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKLREDGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
. ....++...|.++||.++|. + +.+|+. +..++|++++++++|.+++++++
T Consensus 320 ~-------~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s--~~~~~e~l~~~~~~l~~~~~~~~ 378 (380)
T PRK06225 320 G-------IDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVS--FSIPREQVEVFCEEFPDVVETLR 378 (380)
T ss_pred c-------CCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEE--eCCCHHHHHHHHHHHHHHHHHhh
Confidence 1 01456888889999999873 1 467775 45689999999999999988765
No 126
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.70 E-value=3.4e-15 Score=165.40 Aligned_cols=205 Identities=17% Similarity=0.121 Sum_probs=143.4
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch-hhhcCC-CCcEE--EeccccC-
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGC-VPDIA--CYGKLLT- 692 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a-~e~~gv-~PDiv--t~sKgLg- 692 (863)
.++.+|++++. ++..|.+. |.+.+++|.++|+++|+++|+||++++++..+.... ....+. ..|++ +++|.++
T Consensus 131 ~~~~~v~i~~~-~~~tG~~~-~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~ 208 (350)
T cd00609 131 PKTKLLYLNNP-NNPTGAVL-SEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGL 208 (350)
T ss_pred ccceEEEEECC-CCCCCccc-CHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCC
Confidence 56889999996 89899754 788899999999999999999999998876665431 111111 22443 6899998
Q ss_pred CCCCCceeeeccH-HHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHH
Q 002941 693 GGVIPLAATLATN-AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQI 771 (863)
Q Consensus 693 gG~~Pigav~~~~-~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~ 771 (863)
+| .++|++++++ ++.+.+... ....++..++.+++++.++|+..+ +..+++.+......+.+.+ .+
T Consensus 209 ~g-~~~G~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~----~L 275 (350)
T cd00609 209 PG-LRIGYLIAPPEELLERLKKL------LPYTTSGPSTLSQAAAAAALDDGE--EHLEELRERYRRRRDALLE----AL 275 (350)
T ss_pred cc-cceEEEecCHHHHHHHHHHH------HHhcccCCChHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHH----HH
Confidence 77 7999999999 888888652 233467778888888888888653 3334444444444444433 33
Q ss_pred hcCCCee-EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHH
Q 002941 772 SSHRTVQ-RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 772 ~~~p~v~-~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v 843 (863)
.+.+... .....|.++.+.+.... ....+.+.|.++||++.+. ++.+|+.+... ++|+++++
T Consensus 276 ~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~--~~~i~~~~ 345 (350)
T cd00609 276 KELGPLVVVKPSGGFFLWLDLPEGD--------DEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP--EEELEEAL 345 (350)
T ss_pred HhcCCccccCCCccEEEEEecCCCC--------hHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC--HHHHHHHH
Confidence 3443322 34566778778775431 2445666777889999864 36899987666 99999999
Q ss_pred HHHH
Q 002941 844 LKLY 847 (863)
Q Consensus 844 ~~L~ 847 (863)
++|+
T Consensus 346 ~al~ 349 (350)
T cd00609 346 ERLA 349 (350)
T ss_pred HHhh
Confidence 9885
No 127
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=99.68 E-value=1.5e-14 Score=162.55 Aligned_cols=319 Identities=10% Similarity=0.067 Sum_probs=197.1
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.++|+.++. +.+|. +|.+.+|+.++++.+.+.. ..-..+|.+.++++++.. .+.+++++++++++..+++
T Consensus 30 ~~i~l~~n~--~~~~~--~~~v~~a~~~~~~~~~~~p-----~~g~~~lr~~ia~~~~~~-~~~i~~t~G~~~~l~~~~~ 99 (359)
T PRK03158 30 KIVKLASNE--NPYGP--SPKVKEAIAAHLDELALYP-----DGYAPELRTKVAKHLGVD-EEQLLFGAGLDEVIQMISR 99 (359)
T ss_pred ceEEecCCC--CCCCC--CHHHHHHHHHHHHHhhcCC-----CCcHHHHHHHHHHHhCCC-HHHEEECCCHHHHHHHHHH
Confidence 577877643 34664 7999999999887654322 223456667777766533 3689999999999887766
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
...+ .| ..|++...+|++....+... |. .+
T Consensus 100 ~~~~---------~g------------d~v~~~~p~y~~~~~~~~~~-g~----------------------------~~ 129 (359)
T PRK03158 100 ALLN---------PG------------TNTVMAEPTFSQYRHNAIIE-GA----------------------------EV 129 (359)
T ss_pred HHhC---------CC------------CEEEEcCCCHHHHHHHHHHc-CC----------------------------eE
Confidence 4421 12 56898999998753222111 00 00
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..++..+ + ..| .+.+++.+. ++.-..+|+.| ++..|.+.+.
T Consensus 130 ~~~~~~~-~---------------------~~d--------~~~l~~~~~-------~~~~~v~i~~p--~NPtG~~~~~ 170 (359)
T PRK03158 130 REVPLKD-G---------------------GHD--------LEAMLKAID-------EQTKIVWICNP--NNPTGTYVNH 170 (359)
T ss_pred EEEecCC-C---------------------CcC--------HHHHHHhcC-------CCCCEEEEeCC--CCCCCCCCCH
Confidence 1111100 0 011 123333332 12223344556 8999987763
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhcCCCCc-EE--EeccccC-CCCCCceeeeccHHHHHhhhcC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPD-IA--CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PD-iv--t~sKgLg-gG~~Pigav~~~~~i~~~l~~~ 714 (863)
+-+.++.+.|+ +|+++|+||++..|-..+. .......+-.+. ++ +|||.++ .| +++|++++++++++.+...
T Consensus 171 -~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~~v~~~~~~~~~~~~ 247 (359)
T PRK03158 171 -EELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAA-LRVGYGIASEELIEKLNIA 247 (359)
T ss_pred -HHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcc-hhhehhcCCHHHHHHHHHh
Confidence 33444444442 6999999999976632221 111111121223 33 7899998 68 8999999999999988642
Q ss_pred CccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccC
Q 002941 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (863)
Q Consensus 715 ~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~ 794 (863)
..+++.++++++++.++|+ +.++.+++.+..+..++.+. +.+.+++ +..+++.|.++.+.+..+
T Consensus 248 --------~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~----~~l~~~~-~~~~~~~g~~i~~~~~~~ 311 (359)
T PRK03158 248 --------RPPFNTTRIAQYAAIAALE---DQAFLKECVEKNAEGLEQYY----AFCKEYG-LFYYPSQTNFIFVDTGRD 311 (359)
T ss_pred --------cCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHH----HHHHHCC-CeeCCCcCcEEEEECCCC
Confidence 2346789999999988885 45556565555555554443 3344443 333566788887776321
Q ss_pred CcCCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
..++++.|.++||++.|+ .+.+|+. ..+++++++++++|++.
T Consensus 312 ----------~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~---~~~~~~~~~l~~al~~~ 358 (359)
T PRK03158 312 ----------ANELFEALLKKGYIVRSGAALGFPTGVRIT---IGLKEQNDKIIELLKEL 358 (359)
T ss_pred ----------HHHHHHHHHHCCeEEeeCCCCCCCCeEEEe---cCCHHHHHHHHHHHHHh
Confidence 457888899999999984 3678886 45899999999999874
No 128
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.67 E-value=2.7e-14 Score=160.73 Aligned_cols=325 Identities=14% Similarity=0.063 Sum_probs=190.5
Q ss_pred CcHHHHHHHHHHHHhcccccC-CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~-~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr 495 (863)
.||.+++|+.+++........ .....+...++.++|+++++.+ ...++|+++|++|+..+++.++ .. .. ++
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~~~~~ggt~a~~~a~~~~~-~~---~~---~~ 103 (371)
T PRK13520 32 PHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLP-DAYGYITSGGTEANIQAVRAAR-NL---AK---AE 103 (371)
T ss_pred chHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCC-CCCeEEecCcHHHHHHHHHHHH-hh---cc---CC
Confidence 689999999998875322211 1112334478999999988743 2357899999999999999883 22 00 00
Q ss_pred cCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccc
Q 002941 496 LGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (863)
Q Consensus 496 ~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (863)
+.+||+.+.++..+.. +....|. .+..++.+..+
T Consensus 104 ----------~~~vl~~~~~h~s~~~-~~~~~g~----------------------------~~~~v~~~~~~------- 137 (371)
T PRK13520 104 ----------KPNIVVPESAHFSFDK-AADMLGV----------------------------ELRRAPLDDDY------- 137 (371)
T ss_pred ----------CceEEecCcchHHHHH-HHHHcCc----------------------------eEEEecCCCCC-------
Confidence 2568777765433211 1111000 01112211100
Q ss_pred cccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCC
Q 002941 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (863)
Q Consensus 576 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gi 655 (863)
..| .+.+++.+.+ +....+++.+ .+..|.+.+ +++|.++|++||+
T Consensus 138 --------------~~d--------~~~l~~~i~~-------~~~~vi~~~~--~~~tG~~~~----l~~I~~l~~~~g~ 182 (371)
T PRK13520 138 --------------RVD--------VKAVEDLIDD-------NTIGIVGIAG--TTELGQVDP----IPELSKIALENGI 182 (371)
T ss_pred --------------cCC--------HHHHHHHHhh-------CCEEEEEEcC--CcCCcccCC----HHHHHHHHHHcCC
Confidence 011 2456666642 2333444555 356787776 9999999999999
Q ss_pred eEEEeccccccc----ccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeec-cHHHHHhhhcCCccc----eeeccc
Q 002941 656 PVIFDEVFTGFW----RLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLA-TNAVFDSFVGDSKLK----ALLHGH 724 (863)
Q Consensus 656 lLI~DEV~TGfG----RtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~-~~~i~~~l~~~~~~~----~~~~~~ 724 (863)
++++||+|+++. +.+..+..... ..|.+++ -|.+.+| .|+|+++. ++++++.+....... .+.+.+
T Consensus 183 ~livD~a~~~~~~~~~~~~~~~~~~~~--~vd~~~~s~~K~~~a~-~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g 259 (371)
T PRK13520 183 FLHVDAAFGGFVIPFLDDPPNFDFSLP--GVDSITIDPHKMGLAP-IPAGGILFRDESYLDALAVDTPYLTSKKQATLTG 259 (371)
T ss_pred CEEEEecchhHHHHhhcCCCCccccCC--CCceEEECCccccCcc-CCceEEEEcCHHHHHhhcccCccccCCCCcceEe
Confidence 999999997653 11111222222 3476665 3654445 78988875 556777664211100 001112
Q ss_pred CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHH
Q 002941 725 SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLY 804 (863)
Q Consensus 725 T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~ 804 (863)
|. ++..++++.++|+.+.++++ ++..+...++.+.+.+.+.+. .... .+.....++.+.+. .
T Consensus 260 t~--~~~~~~~~~~al~~l~~~g~-~~~~~~~~~~~~~l~~~L~~~--g~~~--~~~~~~~~v~~~~~--~--------- 321 (371)
T PRK13520 260 TR--SGAGVAATYAVMKYLGREGY-RKVVERCMENTRWLAEELKER--GFEP--VIEPVLNIVAFDDP--N--------- 321 (371)
T ss_pred ec--cChHHHHHHHHHhhhcHhHH-HHHHHHHHHHHHHHHHHHHhC--CCEE--ecCCCceEEEEecC--C---------
Confidence 22 33558888889988765543 344444555555544443321 1211 12223446666553 1
Q ss_pred HHHHHHHHHHCCcEEEecC--CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 805 AASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 805 ~~~l~~~l~e~GV~~~p~g--~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
..++.+.|.++||++++.+ ..+|++++..+|++|++.+++.|+++++
T Consensus 322 ~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 322 PDEVREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred HHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 4578889999999998753 6799987778899999999999988764
No 129
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=99.66 E-value=4.2e-14 Score=159.90 Aligned_cols=326 Identities=13% Similarity=0.138 Sum_probs=204.8
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.++++..+ ...+| .+|++.+|+.+.+..... |..+...+|.++|+++.+-. .+.++++++.++++..+++
T Consensus 33 ~~~~l~~~--~~~~~--~~~~~~~a~~~~~~~~~~-----Y~~~~~~~Lr~~ia~~~~~~-~~~I~it~G~~~~l~~~~~ 102 (369)
T PRK08153 33 FRARIGAN--ESGFG--PSPSVIAAMREAAAEIWK-----YGDPENHDLRHALAAHHGVA-PENIMVGEGIDGLLGLIVR 102 (369)
T ss_pred ceeEecCC--CCCCC--CCHHHHHHHHHHHHHhhc-----CCCCccHHHHHHHHHHhCCC-HHHEEEcCCHHHHHHHHHH
Confidence 45666653 23455 579999999887654322 12222457788888877532 3579999999888888777
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.... .| ..|+....+|.+....+...+.
T Consensus 103 ~~~~---------~g------------d~vlv~~p~y~~~~~~~~~~g~------------------------------- 130 (369)
T PRK08153 103 LYVE---------PG------------DPVVTSLGAYPTFNYHVAGFGG------------------------------- 130 (369)
T ss_pred HhcC---------CC------------CEEEECCCcchHHHHHHHHcCC-------------------------------
Confidence 5421 12 4677777777664322111100
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..+++|. + ++..+ .+.+++.+.. ...-+.+++.| ++..|.+. +
T Consensus 131 ~~~~vp~--------------~---------~~~~~-----~~~l~~~~~~------~~~~~i~l~~P--~NPtG~~~-~ 173 (369)
T PRK08153 131 RLVTVPY--------------R---------DDRED-----LDALLDAARR------ENAPLVYLANP--DNPMGSWH-P 173 (369)
T ss_pred eEEEeeC--------------C---------CCCCC-----HHHHHHHhcc------cCCcEEEEeCC--CCCCCCCC-C
Confidence 0111220 0 00001 1223222211 12223455688 67778665 5
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcCC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDS 715 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~~ 715 (863)
.+.+.++.++|+ +|++||+||++..|+..|...... ...|+++ +|||.++ .| +++|++++++++++.+...
T Consensus 174 ~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~~~~~~--~~~~~~i~~~SfSK~~g~~G-lRiG~~v~~~~~~~~l~~~- 248 (369)
T PRK08153 174 AADIVAFIEALP-ETTLLVLDEAYCETAPAGAAPPID--TDDPNVIRMRTFSKAYGLAG-ARVGYAIGAPGTIKAFDKV- 248 (369)
T ss_pred HHHHHHHHHhCC-CCcEEEEeCchhhhcCcccchhhh--hcCCCEEEEecchHhccCcc-hheeeeecCHHHHHHHHHh-
Confidence 666777777776 499999999998886555322211 1235544 7899998 78 8999999999999988641
Q ss_pred ccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC
Q 002941 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795 (863)
Q Consensus 716 ~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~ 795 (863)
..+++.++++++++.++|+ ++++.+++++..+..++.+.+. +++.+. ......|.++.+.+..+.
T Consensus 249 -------~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~~~~~----L~~~g~-~~~p~~~~f~~~~~~~~~ 313 (369)
T PRK08153 249 -------RNHFGMNRIAQAAALAALK---DQAYLAEVVGKIAAARDRIAAI----ARANGL-TPLPSATNFVAIDCGRDG 313 (369)
T ss_pred -------hcCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHH----HHHCCC-ccCCCcCcEEEEECCCCc
Confidence 1346788999999998885 5566777777777777655443 333432 223455677777664211
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEE-ec----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMR-PL----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~-p~----g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
..+..+.+.|.++||+++ |. .+.+|++ ..++++++.++++|++++..++
T Consensus 314 -------~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis---~~~~~~~~~~~~al~~~~~~~~ 367 (369)
T PRK08153 314 -------AFARAVLDGLIARDIFVRMPGVAPLDRCIRVS---CGPDEELDLFAEALPEALEAAR 367 (369)
T ss_pred -------ccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEe---cCCHHHHHHHHHHHHHHHHHhh
Confidence 136788999999999996 42 2578886 3479999999999998886544
No 130
>PLN02721 threonine aldolase
Probab=99.66 E-value=4.5e-14 Score=157.79 Aligned_cols=338 Identities=14% Similarity=0.047 Sum_probs=192.6
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
+.+|+.++.+. . .+|.+.+|+.+. +.... ..+.++...+|.++|+++++. +.+++++||++++..++.
T Consensus 6 ~~~~~~~~~~~----~-~~~~~~~a~~~~--~~~~~--~~~~~~~~~~l~~~la~~~~~---~~~~~~~~Gs~a~~~~l~ 73 (353)
T PLN02721 6 RVVDLRSDTVT----K-PTDAMRAAMANA--EVDDD--VLGYDPTALRLEEEMAKIFGK---EAALFVPSGTMGNLISVL 73 (353)
T ss_pred hhhhhhccccc----C-CCHHHHHHHHhc--cCCCc--ccCCCHHHHHHHHHHHHHhCC---ceeEEecCccHHHHHHHH
Confidence 56788887666 2 368999998764 12221 123466688999999999983 568899999999987777
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcc-c-cceecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL-G-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~-g-als~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
.... .. | ..|++.+.+|.+... + .....|
T Consensus 74 ~~~~----~~----g------------d~Vl~~~~~~~~~~~~~~~~~~~g----------------------------- 104 (353)
T PLN02721 74 VHCD----VR----G------------SEVILGDNSHIHLYENGGISTLGG----------------------------- 104 (353)
T ss_pred HHcc----CC----C------------CeEEEcCccceehhcccchhhhcC-----------------------------
Confidence 6410 01 1 468877776522111 1 000000
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
.....+|... .+ ..| .+.+++.+++.. ..+..+..+|+++++ ++..|..+
T Consensus 105 -~~~~~v~~~~-----------------~~--~~d--------~~~l~~~i~~~~-~~~~~~~~~v~l~~~-~~np~G~~ 154 (353)
T PLN02721 105 -VHPRTVKNNE-----------------DG--TMD--------LDAIEAAIRPKG-DDHFPTTRLICLENT-HANCGGRC 154 (353)
T ss_pred -ceeEecCCCc-----------------CC--CcC--------HHHHHHHHHhcc-CCCCCcceEEEEecc-ccccCCcc
Confidence 0001111000 00 011 244555554210 111246778999987 66544466
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcCCCCc--EEEeccccCCCCCCcee-eeccHHHHHhhhc
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD--IACYGKLLTGGVIPLAA-TLATNAVFDSFVG 713 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PD--ivt~sKgLggG~~Piga-v~~~~~i~~~l~~ 713 (863)
++.+.+++|.++|++||+++|+||++. ++-..... .........| +++++|++++ |+|+ +++++++++.+..
T Consensus 155 ~~~~~l~~l~~l~~~~g~~livD~a~~-~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~---~~G~~~~~~~~~~~~~~~ 230 (353)
T PLN02721 155 LSVEYTDKVGELAKRHGLKLHIDGARI-FNASVALGVPVHRLVKAADSVSVCLSKGLGA---PVGSVIVGSKSFIRKAKR 230 (353)
T ss_pred ccHHHHHHHHHHHHHcCCEEEEEchhh-hcchhhhCCCHHHHhhhCCEEEEecccccCC---ceeeEEecCHHHHHhHHH
Confidence 688999999999999999999999984 43211000 0111111244 4578999973 5665 5678888876542
Q ss_pred CCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE-e-cccceEEEEEE
Q 002941 714 DSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR-V-VALGTLCAIEL 791 (863)
Q Consensus 714 ~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~-v-rg~Gl~~~iel 791 (863)
-. ....+... ..+..+++++.+++.. .+++.+. ..+.+.+ .+.+.+.+.+.. + ...+.++.+.+
T Consensus 231 ~~---~~~~~~~~-~~~~~~~~~~~~l~~~-----~~~~~~~-~~~~~~l----~~~L~~~~~~~~~~~~~~~~~~~~~~ 296 (353)
T PLN02721 231 LR---KTLGGGMR-QVGVLAAAALVALQEN-----VPKLEDD-HKKAKLL----AEGLNQIKGLRVNVAAVETNIVYFDI 296 (353)
T ss_pred HH---HhcCCCee-hhHHHHHHHHHHHHHH-----HHHHHHH-HHHHHHH----HHHHHhCCCcEEecCCccceEEEEEc
Confidence 10 00111111 1122334444444322 1122211 1222222 333444443311 2 23455677777
Q ss_pred ccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 792 QAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 792 ~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.... . .....+.+.|.++||++++.+ +.+|+++++.++++|+++++++|++++..
T Consensus 297 ~~~~---~---~~~~~~~~~L~~~gi~v~~~~~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~ 352 (353)
T PLN02721 297 TDGS---R---ITAEKLCKSLEEHGVLLMPGNSSRIRVVTHHQISDSDVQYTLSCFQQAALT 352 (353)
T ss_pred cCCc---c---ccHHHHHHHHHhCCcEEecCCCceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence 5320 0 125678999999999999876 78999988889999999999999987753
No 131
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=99.65 E-value=6.9e-14 Score=157.65 Aligned_cols=322 Identities=13% Similarity=0.169 Sum_probs=198.1
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
+++|+.++. +.+|- .|.+.+++.+.+..+.. +......+|.+.++++++.+ .+.+++++++++++..++.
T Consensus 33 ~~i~l~~~~--~~~~~--~~~~~~a~~~~~~~~~~-----y~~~~~~~lr~~ia~~~~~~-~~~i~~t~G~~~~l~~~~~ 102 (367)
T PRK02731 33 DIIKLASNE--NPLGP--SPKAIEAIRAAADELHR-----YPDGSGFELKAALAEKFGVD-PERIILGNGSDEILELLAR 102 (367)
T ss_pred ceEEecCCC--CCCCC--CHHHHHHHHHHHHhhcC-----CCCCcHHHHHHHHHHHhCcC-HHHEEEcCCHHHHHHHHHH
Confidence 789988743 35663 68899999988765432 22222357888888877643 3578888888877766555
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
...+ .| ..|+..+.+|.+....+... |.
T Consensus 103 ~l~~---------~g------------d~vl~~~p~y~~~~~~~~~~-g~------------------------------ 130 (367)
T PRK02731 103 AYLG---------PG------------DEVIYSEHGFAVYPIAAQAV-GA------------------------------ 130 (367)
T ss_pred HhcC---------CC------------CEEEEecCCHHHHHHHHHHc-CC------------------------------
Confidence 4311 12 46888887775543222111 10
Q ss_pred eeecCcc-hhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 560 WILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 560 ~~~~~P~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
..+.+|. .+ ..| .+.+++.+. ++.-..++..| ++..|.+.+
T Consensus 131 ~~~~~~~~~~---------------------~~~--------~~~l~~~~~-------~~~~~v~l~~p--~nptG~~~~ 172 (367)
T PRK02731 131 KPVEVPAKDY---------------------GHD--------LDAMLAAVT-------PRTRLVFIANP--NNPTGTYLP 172 (367)
T ss_pred eEEEecccCC---------------------CCC--------HHHHHHHhC-------CCCcEEEEeCC--CCCCCcCCC
Confidence 0011110 00 001 133444442 12223344455 788997765
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhc
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~ 713 (863)
.+-+.++.+.|+ +|+++|+||++..+...+. ..+...++..++++ +|||.+| .| +++|++++++++++.+..
T Consensus 173 -~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~~~~~~~~l~~ 249 (367)
T PRK02731 173 -AEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAG-LRVGYGIAPPEIIDALNR 249 (367)
T ss_pred -HHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcc-cceeeeeCCHHHHHHHHH
Confidence 333444444442 4999999999987754332 22334344445665 7899986 67 899999999999998864
Q ss_pred CCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEcc
Q 002941 714 DSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQA 793 (863)
Q Consensus 714 ~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~ 793 (863)
. ..++..++++++++.+.|+ +.++.+++++..+..++.+.+ .+++++ +....+.|.++.+.+.+
T Consensus 250 ~--------~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~~~~l~~----~L~~~g-~~~~~~~g~~~~i~~~~ 313 (367)
T PRK02731 250 V--------RQPFNVNSLALAAAVAALD---DDAFVEKSRALNAEGMAWLTE----FLAELG-LEYIPSVGNFILVDFDD 313 (367)
T ss_pred c--------cCCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHH----HHHHCC-CccCCCCceEEEEECCC
Confidence 2 1245567788887777764 455556666655555554443 333443 22234568888888743
Q ss_pred CCcCCCCchHHHHHHHHHHHHCCcEEEecC-----CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 794 AGCNAGYGSLYAASLLKKLREDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 794 ~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-----~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.. .+.++++.|.++||++++.. +.+|+.. .+.++++.++++|+++++
T Consensus 314 ~~--------~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~---~~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 314 GK--------DAAEAYQALLKRGVIVRPVAGYGLPNALRITI---GTEEENRRFLAALKEFLA 365 (367)
T ss_pred CC--------CHHHHHHHHHHCCEEEEeCCCCCCCCeEEEec---CCHHHHHHHHHHHHHHHh
Confidence 21 25678889999999999852 5788873 478899999999988764
No 132
>PRK06108 aspartate aminotransferase; Provisional
Probab=99.64 E-value=1.9e-13 Score=154.74 Aligned_cols=339 Identities=13% Similarity=0.065 Sum_probs=200.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc-ccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~A 477 (863)
..+++..|... ++ ..+.+.+++.+.+..... +....+..+....+++.+.+..+.. ..++++++++|++|+..+
T Consensus 25 ~~i~l~~g~~~--~~--~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~ 100 (382)
T PRK06108 25 GVLPLWFGESD--LP--TPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLA 100 (382)
T ss_pred CeEEecCCCCC--CC--CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHH
Confidence 34565554332 33 368899999887765321 1112234456667777776654411 136899999999999988
Q ss_pred HHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 478 LklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
++...+ .| ..|+....+|.+....+... |
T Consensus 101 ~~~l~~---------~g------------d~vl~~~p~y~~~~~~~~~~-g----------------------------- 129 (382)
T PRK06108 101 AQALVG---------PG------------DEVVAVTPLWPNLVAAPKIL-G----------------------------- 129 (382)
T ss_pred HHHhcC---------CC------------CEEEEeCCCccchHHHHHHC-C-----------------------------
Confidence 876521 12 46888877775432211111 0
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
...+.+|... + ...| .-| .+.+++.+. + ++.++++... ++..|.+
T Consensus 130 -~~~~~v~~~~------------~--~~~~--~~d--------~~~l~~~~~-------~-~~~~i~l~~p-~NPtG~~- 174 (382)
T PRK06108 130 -ARVVCVPLDF------------G--GGGW--TLD--------LDRLLAAIT-------P-RTRALFINSP-NNPTGWT- 174 (382)
T ss_pred -CEEEEeeCCC------------C--CCCc--cCC--------HHHHHHhcC-------c-cceEEEEECC-CCCCCcc-
Confidence 0011111100 0 0000 001 133444442 1 2334444433 7888866
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEeccccccccc-CCc-ch-hhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHh
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRL-GVE-TT-ADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDS 710 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRt-G~~-~a-~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~ 710 (863)
.+.+.+++|.++|++||+++|+||++.+|... +.. .. .......+.++ +|||.++ .| +++|++++++++++.
T Consensus 175 ~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~~~~~~~~~~~ 253 (382)
T PRK06108 175 ASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTG-WRLGWLVAPPALGQV 253 (382)
T ss_pred cCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcc-cceeeeeCCHHHHHH
Confidence 47889999999999999999999999887432 111 11 11111122233 7899886 57 899999999999988
Q ss_pred hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEEE
Q 002941 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAI 789 (863)
Q Consensus 711 l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~i 789 (863)
+... ....+++.++++++++.++|+. .+++.+++++..+..++.+. +.+.+.+.+..+... |+++.+
T Consensus 254 ~~~~------~~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~~~~l~----~~L~~~~~~~~~~p~~g~~~~~ 321 (382)
T PRK06108 254 LEKL------IEYNTSCVAQFVQRAAVAALDE--GEDFVAELVARLRRSRDHLV----DALRALPGVEVAKPDGAMYAFF 321 (382)
T ss_pred HHHH------HHhcccCCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHH----HHHHhCCCCcccCCCeeEEEEE
Confidence 7641 1223556788888888888863 23344555555555555443 334444444334444 445566
Q ss_pred EEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.+.... ...+++..|+ ++||++.|+ .+.+|++... +++++++++++|.++++
T Consensus 322 ~l~~~~--------~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 322 RIPGVT--------DSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR--DPARLDEAVERLRRFLA 381 (382)
T ss_pred eCCCCC--------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 665321 2456788775 579999763 2678987654 89999999999987764
No 133
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.64 E-value=6.7e-14 Score=155.43 Aligned_cols=324 Identities=14% Similarity=0.030 Sum_probs=183.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhc
Q 002941 410 TQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH 489 (863)
Q Consensus 410 ~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~ 489 (863)
.+++| .+|.+.+|+.+.+.... ..+..+...+|.+.++++++. +.++++++|++|+..+++..+.
T Consensus 5 ~~~~~--~~~~v~~a~~~~~~~~~----~~~~~~~~~~l~~~~a~~~g~---~~~~~~~~gt~a~~~~~~~l~~------ 69 (338)
T cd06502 5 DTVTG--PTPEMLEAMAAANVGDD----VYGEDPTTAKLEARAAELFGK---EAALFVPSGTAANQLALAAHTQ------ 69 (338)
T ss_pred ccCCC--CCHHHHHHHHhcccCCc----ccCCCHHHHHHHHHHHHHhCC---CeEEEecCchHHHHHHHHHhcC------
Confidence 45677 57999999987653221 112456788999999999872 5788999999999988876521
Q ss_pred cccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhh
Q 002941 490 EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569 (863)
Q Consensus 490 G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~ 569 (863)
.| ..|+. ...+|.....+..... .. |+....+|...
T Consensus 70 ---~g------------d~v~~-~~~~~~~~~~~~~~~~---~~------------------------g~~~~~v~~~~- 105 (338)
T cd06502 70 ---PG------------GSVIC-HETAHIYTDEAGAPEF---LS------------------------GVKLLPVPGEN- 105 (338)
T ss_pred ---CC------------CeEEE-ecCcceeeecCCcHHH---Hc------------------------CceEEeecCCC-
Confidence 11 34654 4455544321110000 00 00001111000
Q ss_pred hhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHH
Q 002941 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE 649 (863)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrel 649 (863)
+ ..| .+.+++.+.+.. ..+..+..+|+++.. .+.||+. +.+.+++|.++
T Consensus 106 -----------------~--~~d--------~~~l~~~i~~~~-~~~~~~~~~v~l~~p-~n~g~~~--~~~~l~~i~~~ 154 (338)
T cd06502 106 -----------------G--KLT--------PEDLEAAIRPRD-DIHFPPPSLVSLENT-TEGGTVY--PLDELKAISAL 154 (338)
T ss_pred -----------------C--cCC--------HHHHHHHhhccC-CCcCCcceEEEEEee-cCCcccc--CHHHHHHHHHH
Confidence 0 011 234555554210 011124566666654 5665543 78889999999
Q ss_pred HHHcCCeEEEeccccccc--ccCCcchhhhcCCCCcEE--EeccccCCCCCCcee-eeccHHHHHhhhcCCccceeeccc
Q 002941 650 CQNRKIPVIFDEVFTGFW--RLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAA-TLATNAVFDSFVGDSKLKALLHGH 724 (863)
Q Consensus 650 c~~~gilLI~DEV~TGfG--RtG~~~a~e~~gv~PDiv--t~sKgLggG~~Piga-v~~~~~i~~~l~~~~~~~~~~~~~ 724 (863)
|++||+++|+||++.-+. -.|. ....+...+|++ +++|.++ +|.|+ +++++++++.+.... ..+++
T Consensus 155 ~~~~~~~livDea~~~~~~~~~~~--~~~~~~~~~d~~~~s~sK~~~---~~~g~~~~~~~~~~~~~~~~~----~~~~~ 225 (338)
T cd06502 155 AKENGLPLHLDGARLANAAAALGV--ALKTYKSGVDSVSFCLSKGGG---APVGAVVVGNRDFIARARRRR----KQAGG 225 (338)
T ss_pred HHHcCCeEeechHHHHHHHHhcCC--CHHHHHhcCCEEEEeccccCC---CccceEEECCHHHHHHHHHHH----HHhCC
Confidence 999999999999973211 1122 222223356766 5689876 23444 457889888876411 12345
Q ss_pred CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHH
Q 002941 725 SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLY 804 (863)
Q Consensus 725 T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~ 804 (863)
+++.+++++++++++|+.-...+..+++.++.+++.+ . +.+.+. ......+.++.+.+.... ..
T Consensus 226 ~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~----~----L~~~~~-~~~~~~~~~~~v~~~~~~-------~~ 289 (338)
T cd06502 226 GMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAE----A----LEELGG-LESEVQTNIVLLDPVEAN-------AV 289 (338)
T ss_pred ChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH----H----HHhcCC-CcccccCCeEEEecCCcc-------HH
Confidence 6667778888888877631111122333333333333 2 222332 111234445555543211 12
Q ss_pred HHHHHHHHH---HCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 805 AASLLKKLR---EDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 805 ~~~l~~~l~---e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
...+.+.+. ++|+++++.+ +.+|++|++.++++|++++++++++
T Consensus 290 ~~~l~~~l~~~~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 290 FVELSKEAIERRGEGVLFYAWGEGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred HHHHHHHHHHhhhCCEEEEecCCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 334444443 7899998865 8999999999999999999998864
No 134
>PRK07682 hypothetical protein; Validated
Probab=99.63 E-value=8.6e-14 Score=157.62 Aligned_cols=326 Identities=13% Similarity=0.093 Sum_probs=192.7
Q ss_pred cHHHHHHHHHHHHhc-ccccCCCCCChHHHHHHHHHHhhcCCCC-C-CeEEEeCChhhHHHHHHHHHHHHHHhhcccccc
Q 002941 418 QIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~p~~~-~-~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tg 494 (863)
.+.+.+++.++++.. ..+....+..+....+++.+.+..+... . +.++++++|++|++.+++...+ .|
T Consensus 35 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~---------~g 105 (378)
T PRK07682 35 PWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIIN---------PG 105 (378)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCC---------CC
Confidence 467888888877642 1111122334556677777765433210 1 3799999999999988876521 12
Q ss_pred ccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcc
Q 002941 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (863)
Q Consensus 495 r~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~ 574 (863)
..|++.+.+|++....+...+. . .+++|...
T Consensus 106 ------------d~vl~~~p~y~~~~~~~~~~g~-~------------------------------~~~~~~~~------ 136 (378)
T PRK07682 106 ------------DEVLIVEPSFVSYAPLVTLAGG-V------------------------------PVPVATTL------ 136 (378)
T ss_pred ------------CEEEEeCCCchhhHHHHHHcCC-E------------------------------EEEeecCC------
Confidence 5799999999864322211110 0 01111000
Q ss_pred ccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC
Q 002941 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (863)
Q Consensus 575 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g 654 (863)
+ ..+ .-| .+.+++.+. ....+.+++.| ++..|. +.+.+.+++|.++|++||
T Consensus 137 ------~---~~~--~~d--------~~~l~~~~~-------~~~~~v~~~~p--~NPtG~-~~s~~~~~~l~~~~~~~~ 187 (378)
T PRK07682 137 ------E---NEF--KVQ--------PAQIEAAIT-------AKTKAILLCSP--NNPTGA-VLNKSELEEIAVIVEKHD 187 (378)
T ss_pred ------c---cCC--CCC--------HHHHHhhcC-------cccEEEEEECC--CCCcCc-CcCHHHHHHHHHHHHHcC
Confidence 0 000 001 234444442 12233445666 788886 557889999999999999
Q ss_pred CeEEEecccccccccCCcchh-hhcCCCCcE---EEeccccC-CCCCCceeeeccHHHHHhhhcCCccceeecccCCCcc
Q 002941 655 IPVIFDEVFTGFWRLGVETTA-DLLGCVPDI---ACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAH 729 (863)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~-e~~gv~PDi---vt~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~ 729 (863)
+++|+||++..|...+....+ ...+..+.+ .+|||.++ .| +++|++++++++++.+... ....+++.+
T Consensus 188 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lR~G~~~~~~~~i~~l~~~------~~~~~~~~~ 260 (378)
T PRK07682 188 LIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTG-WRLGFIAAPVYFSEAMLKI------HQYSMMCAP 260 (378)
T ss_pred cEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChh-hhhhhhhcCHHHHHHHHHH------HHhhccCCC
Confidence 999999999988655532221 212222333 37899997 67 8999999999999988641 112345567
Q ss_pred HHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc-eEEEEEEccCCcCCCCchHHHHHH
Q 002941 730 ALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASL 808 (863)
Q Consensus 730 pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l 808 (863)
+++.+++.++|+.- +.+.+++++..+..++.+.+ .+.++. +......| .++.+.+.... .....+
T Consensus 261 ~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~~~~----~L~~~~-~~~~~p~g~~~~~~~~~~~~-------~~~~~~ 326 (378)
T PRK07682 261 TMAQFAALEALRAG--NDDVIRMRDSYRKRRNFFVT----SFNEIG-LTCHVPGGAFYAFPSISSTG-------LSSEEF 326 (378)
T ss_pred HHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHH----HHHHCC-CccCCCCeeEEEEEeccCCC-------CCHHHH
Confidence 88888888777521 22334444444444443333 333332 22233444 44445553211 014567
Q ss_pred HHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 809 LKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 809 ~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+..++ ++||.+.|+ .+.+|++. ..+++++++++++|.++++++
T Consensus 327 ~~~ll~~~gv~v~pg~~f~~~~~~~iRis~--~~~~~~l~~~l~~l~~~l~~~ 377 (378)
T PRK07682 327 AEQLLLEEKVAVVPGSVFGESGEGFIRCSY--ATSLEQLQEAMKRMKRFVENK 377 (378)
T ss_pred HHHHHHhCCEEEcCchhhCcCCCCeEEEEe--CCCHHHHHHHHHHHHHHHhhc
Confidence 87776 789999873 26788863 457899999999998887653
No 135
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=99.62 E-value=1.5e-13 Score=154.58 Aligned_cols=316 Identities=13% Similarity=0.084 Sum_probs=189.6
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCCh-hhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNG-STAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SG-SeAvE~AL 478 (863)
+++|+.++. +.+| ..|.+.+++.+.+.++.. +..+...+|.+.++++++-. .+.++++.+| ++++..++
T Consensus 35 ~~i~l~~~~--~~~~--~~~~~~~~~~~~~~~~~~-----y~~~~~~~lr~~ia~~~~~~-~~~i~~~~~Ga~~~i~~~~ 104 (361)
T PRK00950 35 SIIKLGSNE--NPLG--PSPKAVEAIEKELSKIHR-----YPEPDAPELREALSKYTGVP-VENIIVGGDGMDEVIDTLM 104 (361)
T ss_pred ceEEccCCC--CCCC--CCHHHHHHHHHHHHhhcC-----CCCCCHHHHHHHHHHHhCCC-HHHEEEeCCCHHHHHHHHH
Confidence 678877532 4566 468999999887765422 22333477888888887643 3578884445 56677766
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
+...+ .| ..|++...+|......+... |..
T Consensus 105 ~~~~~---------~g------------d~vlv~~p~y~~~~~~~~~~-g~~---------------------------- 134 (361)
T PRK00950 105 RTFID---------PG------------DEVIIPTPTFSYYEISAKAH-GAK---------------------------- 134 (361)
T ss_pred HHhcC---------CC------------CEEEEcCCChHHHHHHHHHc-CCE----------------------------
Confidence 64411 12 45777777665432211111 100
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
+..++.+..+ ..| .+.+++.+. .+..+.++..| ++..|.+.+
T Consensus 135 ~~~~~~~~~~---------------------~~~--------~~~l~~~~~-------~~~~~v~~~~p--~nptG~~~~ 176 (361)
T PRK00950 135 PVYAKREEDF---------------------SLD--------VDSVLNAIT-------EKTKVIFLCTP--NNPTGNLIP 176 (361)
T ss_pred EEEeecCCCC---------------------CcC--------HHHHHHHhc-------cCCCEEEEeCC--CCCCCCCcC
Confidence 0001100000 001 133444442 12234455567 788898876
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecccccccccCCcchh-hhcCCCCcEEEeccccC-CCCCCceeeeccHHHHHhhhcCCc
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVGDSK 716 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~-e~~gv~PDivt~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~ 716 (863)
.+++.++|+++|+++|+||++.+|. .+..... ..++-.--+-+|||.+| .| +++|++++++++++.+...
T Consensus 177 ----~~~l~~l~~~~~~~li~De~y~~~~-~~~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~-- 248 (361)
T PRK00950 177 ----EEDIRKILESTDALVFVDEAYVEFA-EYDYTPLALEYDNLIIGRTFSKVFGLAG-LRIGYGFVPEWLIDYYMRA-- 248 (361)
T ss_pred ----HHHHHHHHHHCCcEEEEECchhhhC-ccchHHHHHhcCCEEEEEeehHhhcCch-hhcchhcCCHHHHHHHHHh--
Confidence 5678899999999999999998774 2221111 11110111237899997 67 8999999999999887642
Q ss_pred cceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCc
Q 002941 717 LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC 796 (863)
Q Consensus 717 ~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~ 796 (863)
..+++.++++.+++.++|+ +.++.++..+..+..++.+.+. +. +......|.++.+.+...
T Consensus 249 ------~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~----l~----~~~~~~~~~~i~~~~~~~-- 309 (361)
T PRK00950 249 ------KTPFSLTRLSQAAAIAALS---DKEYIEKSIEHGIKSREYLYNE----LP----FKVYPSEANFVLVDVTPM-- 309 (361)
T ss_pred ------cCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhh----cC----eeECCCcceEEEEECCCC--
Confidence 2334567777777777764 4555666665555555544222 22 111233566777777321
Q ss_pred CCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 797 NAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 797 ~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
...++++.|.++||+++++ .+.+|++. .+++++++++++|++++
T Consensus 310 -------~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~---~~~~~~~~l~~~L~~il 360 (361)
T PRK00950 310 -------TAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSI---GTFEENERFLEILKEIV 360 (361)
T ss_pred -------CHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEEC---CCHHHHHHHHHHHHHHh
Confidence 2567889999999999863 25788873 37889999999998765
No 136
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.62 E-value=2.1e-13 Score=156.64 Aligned_cols=320 Identities=12% Similarity=0.044 Sum_probs=184.5
Q ss_pred cHHHHHHHHHHH-Hhccccc----CCCCCChHHHHHHH----HHHhhcCCCCCCeE-EEeCChhhHHHHHHHHHHHHHHh
Q 002941 418 QIELARDMGYTA-ARFGHVM----FPENVYEPALECAE----LLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRKFSF 487 (863)
Q Consensus 418 ~p~V~~Ai~~q~-~~~~~~~----~~~~~~~~~~eLae----~L~~~~p~~~~~~v-~f~~SGSeAvE~ALklA~r~~~~ 487 (863)
||+|.+|+..++ .+++... ..++ ++...+|++ +++++++. +.+ ++++||+.||.+++....
T Consensus 41 ~p~v~~a~~~~~~~~~~~g~~gsr~~~G-~~~~~~lE~~~~~~la~l~g~---~~alv~~~SG~~A~~~~l~al~----- 111 (416)
T PRK13034 41 SPAVMEAQGSVLTNKYAEGYPGKRYYGG-CEFVDEVEALAIERAKQLFGC---DYANVQPHSGSQANGAVYLALL----- 111 (416)
T ss_pred CHHHHHHhcchhhcCCCCCCCCCcccCC-ChHHHHHHHHHHHHHHHHhCC---CceEEecCCcHHHHHHHHHHhc-----
Confidence 699999999995 8876532 1112 577888998 99999984 456 457999999999987652
Q ss_pred hccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcch
Q 002941 488 DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEW 567 (863)
Q Consensus 488 ~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~ 567 (863)
++ ..+||+-..+|.|....+...+ +.+ .|... .+++.. +.
T Consensus 112 ------~~----------GD~Vl~~~~~~~~~~~~g~~~~----~~~----~~~~~--~~~~~~-------------~~- 151 (416)
T PRK13034 112 ------KP----------GDTILGMSLSHGGHLTHGAKVS----LSG----KWYNA--VQYGVD-------------RL- 151 (416)
T ss_pred ------CC----------CCEEEEcCccceeeeecCCcce----ecc----ceeee--EEcccc-------------cc-
Confidence 11 1567776666544111111110 000 00000 000000 00
Q ss_pred hhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCceeCCHHHHHHH
Q 002941 568 LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRIL 646 (863)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fL~~L 646 (863)
....| .+++++.+.. .+..+|++ +++ .| +..+ +++|
T Consensus 152 --------------------~~~~d--------~~~le~~l~~-------~~~klVi~~~~~-~g---~~~d----l~~l 188 (416)
T PRK13034 152 --------------------TGLID--------YDEVEELAKE-------HKPKLIIAGFSA-YP---RELD----FARF 188 (416)
T ss_pred --------------------cCCcC--------HHHHHHHHhh-------cCCeEEEECCCc-cc---cccC----HHHH
Confidence 00011 2345555532 12346666 675 44 3333 8899
Q ss_pred HHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCCCCCceeeeccHH-HHHhhhcCCccceeecc
Q 002941 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNA-VFDSFVGDSKLKALLHG 723 (863)
Q Consensus 647 relc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~~~-i~~~l~~~~~~~~~~~~ 723 (863)
.++|++||++||+|++| ++|-.+.......++ ..|++ +++|+|+|+ ..|+++++++ +.+.++.. .+++
T Consensus 189 ~~la~~~g~~livD~Ah-a~G~~~~g~~~~~~~-~~Di~~~s~~K~l~g~--~GG~v~~~~~~~~~~~~~~-----~~~~ 259 (416)
T PRK13034 189 REIADEVGALLMVDMAH-IAGLVAAGEHPNPFP-HAHVVTTTTHKTLRGP--RGGMILTNDEEIAKKINSA-----VFPG 259 (416)
T ss_pred HHHHHHcCCEEEEeCcc-cccCcccCCCCCCCC-CceEEEEeCcccCCCC--CCeEEEECcHHHHHHHHhh-----cCCc
Confidence 99999999999999999 677776432111112 36876 457999754 2455666554 44433321 1122
Q ss_pred cCCCc-cHHHHHHHHHHHHHhcC--hhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCC
Q 002941 724 HSYSA-HALGCAAAAKSIKWFKD--PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY 800 (863)
Q Consensus 724 ~T~~~-~pla~AAalAaL~~l~~--~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~ 800 (863)
.+-+. .|..++++++.++.++. +++.++++++.+++++.|.+. ..+.+.. .....++.+.+.+..
T Consensus 260 ~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~------G~~~~~~-~~~t~i~~v~~~~~~----- 327 (416)
T PRK13034 260 LQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER------GYDLVSG-GTDNHLLLVDLRPKG----- 327 (416)
T ss_pred ccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc------CCEeccC-CCCCcEEEEEcCCCC-----
Confidence 11122 33344445566665532 334678888888887754221 2221110 123456667665432
Q ss_pred chHHHHHHHHHHHHCCcEEEec-----------CCEEEEecCC----CCcHHHHHHHHHHHHHHHHH
Q 002941 801 GSLYAASLLKKLREDGVYMRPL-----------GNVIYLMCGP----CSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 801 ~~~~~~~l~~~l~e~GV~~~p~-----------g~~lr~~ppl----~~t~eeid~~v~~L~~~l~~ 852 (863)
.....+.+.|.++||++.+. ...+|+.++. .++++|++++++.|.+++..
T Consensus 328 --~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~ 392 (416)
T PRK13034 328 --LSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDD 392 (416)
T ss_pred --CCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 11344567888899999741 2579998887 66799999999999999875
No 137
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.61 E-value=1.7e-13 Score=153.09 Aligned_cols=314 Identities=14% Similarity=0.137 Sum_probs=190.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
+.+|+++|. +.++ .+|++++|+.+++..... +..+...+|.+.++++++-. .+.+++++++++++..+++
T Consensus 20 ~~i~l~~~~--~~~~--~~~~~~~a~~~~~~~~~~-----y~~~~~~~lr~~ia~~~~~~-~~~i~~~~G~~~~l~~~~~ 89 (346)
T TIGR01141 20 EVIKLNSNE--NPFG--PPPKAKEALRAEADKLHR-----YPDPDPAELKQALADYYGVD-PEQILLGNGSDEIIELLIR 89 (346)
T ss_pred ceEEccCCC--CCCC--CCHHHHHHHHHhHHHhhc-----CCCCCHHHHHHHHHHHhCcC-hHHEEEcCCHHHHHHHHHH
Confidence 688887643 3565 479999999988754322 22222367888888877632 3679999999999988776
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
...+ .| .+|+....+|......+ ...| .
T Consensus 90 ~l~~---------~g------------d~v~~~~p~y~~~~~~~-~~~g------------------------------~ 117 (346)
T TIGR01141 90 AFLE---------PG------------DAVLVPPPTYSMYEISA-KIHG------------------------------A 117 (346)
T ss_pred HhcC---------CC------------CEEEEcCCCHHHHHHHH-HHcC------------------------------C
Confidence 5411 11 56888777764321110 0000 0
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
....+|... + ...| .+.+++.+. .++.+|++... ++..|...+
T Consensus 118 ~~~~~~~~~----------------~---~~~d--------~~~l~~~~~--------~~~~~v~l~~p-~NptG~~~~- 160 (346)
T TIGR01141 118 EVVKVPLDE----------------D---GQLD--------LEDILVAID--------DKPKLVFLCSP-NNPTGNLLS- 160 (346)
T ss_pred eEEEeccCC----------------C---CCCC--------HHHHHHhcC--------CCCCEEEEeCC-CCCCCCCCC-
Confidence 001111000 0 0011 133443321 23455555543 788897776
Q ss_pred HHHHHHHHHHHHHc--CCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhc
Q 002941 640 PLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (863)
Q Consensus 640 ~~fL~~Lrelc~~~--gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~ 713 (863)
.+++.++|+.+ |+++|+||++.+|...+... ......++++ +++|.++ .| +++|++++++++.+.+..
T Consensus 161 ---~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~--~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~ 234 (346)
T TIGR01141 161 ---RSDIEAVLERTPEDALVVVDEAYGEFSGEPSTL--PLLAEYPNLIVLRTLSKAFGLAG-LRIGYAIANAEIIDALNK 234 (346)
T ss_pred ---HHHHHHHHHhCCCCcEEEEECchhhhcCCccHH--HHHhhCCCEEEEehhhHhhhchh-hhceeeecCHHHHHHHHh
Confidence 44555555555 99999999998775322211 2222234544 6789995 56 799999999999998864
Q ss_pred CCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEcc
Q 002941 714 DSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQA 793 (863)
Q Consensus 714 ~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~ 793 (863)
. ..+++.++++++++.+.++. .++.++..+..++.++.+. +.+.+++.+.-+...|.++.+++..
T Consensus 235 ~--------~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~----~~L~~~~g~~~~~~~g~~~~~~~~~ 299 (346)
T TIGR01141 235 V--------RAPFNLSRLAQAAAIAALRD---DDFIEKTVEEINAERERLY----DGLKKLPGLEVYPSDANFVLIRFPR 299 (346)
T ss_pred c--------cCCCCCCHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHH----HHHHhcCCCEECCCcCCEEEEecCC
Confidence 2 23456688888888777653 3334444444444454443 3344454443334467788887753
Q ss_pred CCcCCCCchHHHHHHHHHHHHCCcEEEec------CCEEEEecCCCCcHHHHHHHHHHH
Q 002941 794 AGCNAGYGSLYAASLLKKLREDGVYMRPL------GNVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 794 ~~~~~~~~~~~~~~l~~~l~e~GV~~~p~------g~~lr~~ppl~~t~eeid~~v~~L 846 (863)
. +.++++.|.++||++.+. ++.+|+.. .+++++++++++|
T Consensus 300 -~---------~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~---~~~~~i~~~~~~l 345 (346)
T TIGR01141 300 -D---------ADALFEALLEKGIIVRDLNSYPGLPNCLRITV---GTREENDRFLAAL 345 (346)
T ss_pred -C---------HHHHHHHHHHCCeEEEeCCCcCCCCCeEEEec---CCHHHHHHHHHHh
Confidence 2 467888999999999874 36788873 3889999998876
No 138
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.60 E-value=3.7e-13 Score=153.19 Aligned_cols=338 Identities=11% Similarity=0.031 Sum_probs=191.5
Q ss_pred cCCCCCcHHHHHHHHHHHHhcccc-----cCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHH
Q 002941 412 GPDATLQIELARDMGYTAARFGHV-----MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486 (863)
Q Consensus 412 ~lGh~~~p~V~~Ai~~q~~~~~~~-----~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~ 486 (863)
-+|. -.+.+++|+.+....++.. .......+...++.++++++++ .+.++|++||++|+..|++...+
T Consensus 28 ~~~p-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g---~~~~~~~~g~t~a~~~al~~l~~--- 100 (387)
T PRK09331 28 RGGI-LTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLG---MDEARVTHGAREGKFAVMHSLCK--- 100 (387)
T ss_pred cCCC-CCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhC---CCcEEEeCCHHHHHHHHHHHhcC---
Confidence 3565 5788888888877543321 1111234568899999999998 35789999999999999876521
Q ss_pred hhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCc-
Q 002941 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP- 565 (863)
Q Consensus 487 ~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P- 565 (863)
.| .+|++...+ |-+...++...|.. +..++.+
T Consensus 101 ------~g------------d~Vlv~~~~-h~s~~~~~~~~G~~----------------------------~~~v~~~~ 133 (387)
T PRK09331 101 ------KG------------DYVVLDGLA-HYTSYVAAERAGLN----------------------------VREVPKTG 133 (387)
T ss_pred ------CC------------CEEEECCCc-hHHHHHHHHHcCCE----------------------------EEEEeCcc
Confidence 12 456665544 44333322221100 0111110
Q ss_pred chhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHH
Q 002941 566 EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (863)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~ 645 (863)
+.. ...| .+.+++.+.+.. .....++.+|+++-+ .++.|...+ +++
T Consensus 134 ~~~--------------------~~~d--------~~~l~~~l~~~~-~~~~~~~~lV~l~~~-~~~tG~~~~----l~~ 179 (387)
T PRK09331 134 YPE--------------------YKIT--------PEAYAEKIEEVK-EETGKPPALALLTHV-DGNYGNLAD----AKK 179 (387)
T ss_pred CcC--------------------CCcC--------HHHHHHHHHHhh-hccCCCCEEEEEECC-CCCCccccc----HHH
Confidence 000 0011 234555554200 001235677777765 788887766 999
Q ss_pred HHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCCCCCceeeeccHHHHHhhhcCCcccee---
Q 002941 646 LVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKAL--- 720 (863)
Q Consensus 646 Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~--- 720 (863)
|.++|++||+++|+|++| ++|..+. ....+|+ |++ +++|+++++ .++|++++++++++.+....+....
T Consensus 180 I~~la~~~g~~livD~a~-~~g~~~~--~~~~~g~--D~~~~s~~K~l~~~-~~~G~l~~~~~~i~~~~~~~~~~~~~~~ 253 (387)
T PRK09331 180 VAKVAHEYGIPFLLNGAY-TVGRMPV--DGKKLGA--DFIVGSGHKSMAAS-APSGVLATTEEYADKVFRTSRKFGVKEV 253 (387)
T ss_pred HHHHHHHcCCEEEEECCc-ccCCcCC--CHHHcCC--CEEEeeCcccccCC-CCEEEEEECHHHHhhcccccCCCcccce
Confidence 999999999999999999 4554322 2233444 665 568999877 6899999999988876542211000
Q ss_pred -ecccCCCccHHHHHHHHHHHHHhcCh-hhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe---cccceEEEEEEccCC
Q 002941 721 -LHGHSYSAHALGCAAAAKSIKWFKDP-QTNHNIIPERRILRELWDLELIQQISSHRTVQRV---VALGTLCAIELQAAG 795 (863)
Q Consensus 721 -~~~~T~~~~pla~AAalAaL~~l~~~-~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v---rg~Gl~~~iel~~~~ 795 (863)
..+.+ ..+...++++++++.+.+. +..++..++.++++ +.+.+.+.+.-+ .....++.++...-.
T Consensus 254 ~~~~~~--~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~--------~~L~~l~g~~~~~~~~~~~~i~~~~~~~~~ 323 (387)
T PRK09331 254 ELLGCT--LRGAPLVTLMASFPHVVERVKRWDEEVKKARWFV--------DELEKIEGFKQLGEKPRNHDLMKFETPSFD 323 (387)
T ss_pred eeecee--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhcCCCEEEeccCcCcCCeEEEeCCchh
Confidence 01112 2334556666777665321 11222233333333 334445332211 122334445433100
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEe-cCCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRP-LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p-~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.........+..+.+.|.++||+..+ ....+++..++.+++++++.++++|+++++++
T Consensus 324 ~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~i~ri~~~g~t~~di~~l~~aL~~i~~~~ 382 (387)
T PRK09331 324 EIAKKHKRRGFFLYEELKKRGIHGIKPGATKEFKLSTYGLTWEQVEYVADAFKEIAEKY 382 (387)
T ss_pred HHhhhccccchhHHHHHHHcCceEEccCCceEEEEEeccCCHHHHHHHHHHHHHHHHhc
Confidence 00000001245688999999998543 33455555566789999999999999887653
No 139
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.60 E-value=1.3e-13 Score=156.00 Aligned_cols=329 Identities=13% Similarity=0.061 Sum_probs=181.8
Q ss_pred HHHHHHHHHHhcccccC---------CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccc
Q 002941 421 LARDMGYTAARFGHVMF---------PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (863)
Q Consensus 421 V~~Ai~~q~~~~~~~~~---------~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~ 491 (863)
+.+|+.+++++++.... ....++...++.|.|+++++ .+.+.+++||++|+..++.....
T Consensus 20 ~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g---~~~~~i~~g~~~a~~~~~~~l~~-------- 88 (370)
T TIGR02539 20 LTEAARKALVEFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLG---MDEARVTHGAREGKFAVMHALCK-------- 88 (370)
T ss_pred CcHHHHHHHHHHhhccccccccccccccccchHHHHHHHHHHHHhC---CCceEEECChHHHHHHHHHHhhC--------
Confidence 56777777777665321 11224567788888999988 45788899999999988875520
Q ss_pred cccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhh
Q 002941 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (863)
Q Consensus 492 ~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~ 571 (863)
.| .+|++....|+ +...++...+.. ...+|...
T Consensus 89 -~g------------d~Vl~~~~~h~-s~~~~~~~~g~~------------------------------~~~~~~~~--- 121 (370)
T TIGR02539 89 -EG------------DWVVLDGLAHY-TSYVAAERAGLN------------------------------VKEVPHTG--- 121 (370)
T ss_pred -CC------------CEEEECCcccH-HHHHHHHHcCCE------------------------------EEEEecCC---
Confidence 11 45666444443 333322222110 00111000
Q ss_pred hccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHH
Q 002941 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (863)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~ 651 (863)
++.+ ..| .+.+++.+...- .....+..+|+++-+ .+..|.+.+ +++|.++|+
T Consensus 122 ------------~~~~--~~d--------~~~l~~~l~~~~-~~~~~~~~lv~~~~p-~~~~G~~~~----l~~i~~la~ 173 (370)
T TIGR02539 122 ------------HPEY--KVD--------PEGYGEVIEEVE-DESGKPPVLALLTHV-DGEYGNLPD----AGKVAKVCR 173 (370)
T ss_pred ------------cccC--CcC--------HHHHHHHHHHhh-hccCCCcEEEEEECC-CCCCccccC----HHHHHHHHH
Confidence 0000 011 234555553200 001123445555543 678888776 889999999
Q ss_pred HcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCCCCCceeeeccHHHHHhhhcCCcccee----ecccC
Q 002941 652 NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKAL----LHGHS 725 (863)
Q Consensus 652 ~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~----~~~~T 725 (863)
+||++||+||+|. +|..+..+ . ...+|++ +++|++++| .|+|++++++++++.+.....+..+ ..++|
T Consensus 174 ~~~~~livDea~~-~g~~~~~~--~--~~~~di~v~s~sK~~~~~-g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 247 (370)
T TIGR02539 174 EKGVPLLLNCAYT-VGRMPVSA--K--EIGADFIVGSGHKSMAAS-GPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCT 247 (370)
T ss_pred HcCCeEEEECccc-cCCcCCCH--H--HcCCCEEEeeCcccccCC-CCEEEEEECHHHHhhhcccccCCccceeeeeccc
Confidence 9999999999994 55433221 1 1246765 789999876 6899999999999988753321111 01111
Q ss_pred CCccHHHHHHHHHHHHHhcCh-hhHHhHHHHHHHHHHHHHHHHHHHHhcCCC-e-eEecccceEEEEEEccCCcCCCCch
Q 002941 726 YSAHALGCAAAAKSIKWFKDP-QTNHNIIPERRILRELWDLELIQQISSHRT-V-QRVVALGTLCAIELQAAGCNAGYGS 802 (863)
Q Consensus 726 ~~~~pla~AAalAaL~~l~~~-~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~-v-~~vrg~Gl~~~iel~~~~~~~~~~~ 802 (863)
....+++++.++|+...+. +...+..++.+++++ . +.+.+. + ..-.....++.+.+...........
T Consensus 248 --~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~----~----L~~~g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~ 317 (370)
T TIGR02539 248 --SRGAPIVTMMASFPHVVERVKRWDEEVKKTRWFVA----E----LEDIGFIQLGQKPKEHDLVKFETPGFHEIAQKHK 317 (370)
T ss_pred --ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----HHhCCcEEEccCCCcCceEEEECCchhHHhhhhc
Confidence 1223566666677643210 001111222223332 2 233332 1 1112344555555431100000000
Q ss_pred HHHHHHHHHHHHCCcE-EEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 803 LYAASLLKKLREDGVY-MRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 803 ~~~~~l~~~l~e~GV~-~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
..+..+.+.|+++||+ +++.. +.+|++. ..++++|+++++++|++.+++
T Consensus 318 ~~~~~~~~~L~e~GI~~ir~~~~~~iRis~-~~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 318 RRGYFLYEELKKRGIHGIRSGQTKYFKLSV-YGLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred cccHHHHHHHHhCCCccccCCcceEEEEEe-cCCCHHHHHHHHHHHHHHHHh
Confidence 1245689999999998 66643 5889885 468999999999999887654
No 140
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.59 E-value=5.3e-13 Score=149.02 Aligned_cols=305 Identities=15% Similarity=0.119 Sum_probs=182.3
Q ss_pred hHHHHHHHHHHhhcCCCCC-CeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcc
Q 002941 443 EPALECAELLLQGVGKGWA-SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (863)
Q Consensus 443 ~~~~eLae~L~~~~p~~~~-~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~ 521 (863)
+...++.++|+++++.+.- ..++++.||+++++.++..... . +.++|....+++|...
T Consensus 31 ~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~----------~-----------~~~vi~~~~~~~~~~~ 89 (355)
T TIGR03301 31 DVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVP----------R-----------DGKLLVLINGAYGERL 89 (355)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccC----------C-----------CCeEEEECCCchhhHH
Confidence 6678889999998874311 2578899999999999987621 1 1467777777777532
Q ss_pred cccee-cCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHH
Q 002941 522 GAMEA-QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (863)
Q Consensus 522 gals~-t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 600 (863)
..++- .|. + +..++.+..+ ..|
T Consensus 90 ~~~a~~~g~---------------------~-------~~~i~~~~~~---------------------~~d-------- 112 (355)
T TIGR03301 90 AKICEYLGI---------------------P-------HTDLNFSEYE---------------------PPD-------- 112 (355)
T ss_pred HHHHHHcCC---------------------c-------eEEEecCCCC---------------------CCC--------
Confidence 21111 010 0 0111111000 011
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC
Q 002941 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (863)
Q Consensus 601 ~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (863)
.+.+++.+.+ +++....+++-| .+..|...+ +++|.++|++||+++|+|++++ ||.. .+....++
T Consensus 113 ~~~l~~~l~~-----~~~~~~v~~~~~--~~~~G~~~~----~~~i~~l~~~~~~~livD~~~s-~g~~--~~~~~~~~- 177 (355)
T TIGR03301 113 LNRIEEALAA-----DPDITHVATVHH--ETTTGILNP----LEAIAKVARSHGAVLIVDAMSS-FGAI--PIDIEELD- 177 (355)
T ss_pred HHHHHHHHHh-----CCCceEEEEEec--CCcccchhH----HHHHHHHHHHcCCEEEEEeccc-cCCc--ccchhhcC-
Confidence 2455666642 222223333334 455677765 7999999999999999999884 6532 23333333
Q ss_pred CCcEE--EeccccCCCCCCceeeeccHHHHHhhhcCCccceee-----------cccCCCccHHHHHHHHHHHHHhcChh
Q 002941 681 VPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALL-----------HGHSYSAHALGCAAAAKSIKWFKDPQ 747 (863)
Q Consensus 681 ~PDiv--t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~-----------~~~T~~~~pla~AAalAaL~~l~~~~ 747 (863)
.|++ +++|+++|+ .-+|++++++++++.+........+. ....|+.++.++.++.++|+.+.+++
T Consensus 178 -~d~~~~s~~K~l~~~-~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g 255 (355)
T TIGR03301 178 -VDALIASANKCLEGV-PGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEG 255 (355)
T ss_pred -ccEEEecCCcccccC-CceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcc
Confidence 5654 668998764 34689999999988876311100000 01235667888888888998875443
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE-ecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---
Q 002941 748 TNHNIIPERRILRELWDLELIQQISSHRTVQR-VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--- 823 (863)
Q Consensus 748 l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~-vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--- 823 (863)
..++..+..+..++.+.+.+.+. ....+.. ....|.++.+.+.... .....++.+.|.++||++.+.+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~i~~~~~~~ 327 (355)
T TIGR03301 256 GVPARIARYRRNRELLVDGLRAL--GFQPLLPERWQSPIIVSFLYPDDP------DFDFDDFYQELKERGFVIYPGKLTL 327 (355)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHc--CCeeecCCCCCCCcEEEEECCCCC------cchHHHHHHHHHHCCEEEECCcccc
Confidence 22333333444455444443221 1111111 1234556667664321 0124578899999999998753
Q ss_pred -CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 824 -NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 824 -~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
+.+|+.+...+++++++++++.|++++
T Consensus 328 ~~~iRis~~~~~~~~~i~~~~~~l~~~~ 355 (355)
T TIGR03301 328 ADTFRIGTIGEIDAADIERLLEAIKDAL 355 (355)
T ss_pred ccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 689998877889999999999998753
No 141
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.58 E-value=1.3e-12 Score=148.08 Aligned_cols=328 Identities=13% Similarity=0.054 Sum_probs=192.9
Q ss_pred CcHHHHHHHHHHHHhc-ccccCCCC----CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccc
Q 002941 417 LQIELARDMGYTAARF-GHVMFPEN----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~-~~~~~~~~----~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~ 491 (863)
-++.|.+|+.+.+... +....... ..+...++.++++++++.. .+.++|+++|++|+..|++.+.. +.
T Consensus 11 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~i~~t~~~t~a~~~al~~~~~-~~----- 83 (379)
T TIGR03402 11 VDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAE-PDEIIFTSGGTESDNTAIKSALA-AQ----- 83 (379)
T ss_pred CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCcHHHHHHHHHHHHHH-hc-----
Confidence 4688999998887643 11110000 1234556778888888754 46799999999999999987632 10
Q ss_pred cccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhh
Q 002941 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (863)
Q Consensus 492 ~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~ 571 (863)
.+ +..||.....|++.......+.. .+ . .+..++.+...
T Consensus 84 -~~-----------~~~vv~~~~~~~s~~~~~~~~~~----~G-----------~-----------~v~~v~~~~~g--- 122 (379)
T TIGR03402 84 -PE-----------KRHIITTAVEHPAVLSLCQHLEK----QG-----------Y-----------KVTYLPVDEEG--- 122 (379)
T ss_pred -CC-----------CCeEEEcccccHHHHHHHHHHHH----cC-----------C-----------EEEEEccCCCC---
Confidence 11 14566666666543211111100 00 0 01111111000
Q ss_pred hccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHH
Q 002941 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (863)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~ 651 (863)
.-| .+.+++.+. +++..+++.-+ ++..|.+.+ +++|.++|+
T Consensus 123 ------------------~~~--------~~~l~~~i~--------~~~~lv~i~~~-~n~tG~~~~----~~~I~~l~~ 163 (379)
T TIGR03402 123 ------------------RLD--------LEELRAAIT--------DDTALVSVMWA-NNETGTIFP----IEEIGEIAK 163 (379)
T ss_pred ------------------cCC--------HHHHHHhcC--------CCcEEEEEEcc-cCCeeeccc----HHHHHHHHH
Confidence 001 234555542 23456767665 788898887 789999999
Q ss_pred HcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCcccee-ec-ccCCC
Q 002941 652 NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKAL-LH-GHSYS 727 (863)
Q Consensus 652 ~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~~~~-~~-~~T~~ 727 (863)
+||+++|+|++|+ +|.. . .+.....+|++++| | +.|. ..+|++..+++.. +... ..... .. ....+
T Consensus 164 ~~g~~vivD~~~~-~g~~--~--~~~~~~~~D~~~~s~~K-~~gp-~G~g~l~v~~~~~--~~p~-~~g~~~~~~~~~gt 233 (379)
T TIGR03402 164 ERGALFHTDAVQA-VGKI--P--IDLKEMNIDMLSLSGHK-LHGP-KGVGALYIRKGTR--FRPL-LRGGHQERGRRAGT 233 (379)
T ss_pred HcCCEEEEECccc-cccc--c--cCcccCCCCEEEEcHHH-cCCC-CceEEEEECCCCC--CCCc-ccCCccCCCcCCCC
Confidence 9999999999994 5432 1 12223457999999 9 6553 4577777776531 1110 00000 00 01223
Q ss_pred ccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec---cc-ceEEEEEEccCCcCCCCchH
Q 002941 728 AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV---AL-GTLCAIELQAAGCNAGYGSL 803 (863)
Q Consensus 728 ~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr---g~-Gl~~~iel~~~~~~~~~~~~ 803 (863)
.|..+..+..++++++.+ +.+.+.+..+.+.+.+.+.+.+ ..+.+.-.. .. ..++.+.+....
T Consensus 234 ~~~~~~~~l~~al~~~~~--~~~~~~~~~~~l~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 300 (379)
T TIGR03402 234 ENVPGIVGLGKAAELATE--HLEEENTRVRALRDRLEAGLLA---RIPDARLNGDPTKRLPNTVNISFEYIE-------- 300 (379)
T ss_pred ccHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHh---hCCCEEEeCCCccCCCCEEEEEecCCC--------
Confidence 466777778888887743 3556666666777666544332 234332111 01 123444443221
Q ss_pred HHHHHHHHHHHCCcEEEec------------------------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 804 YAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 804 ~~~~l~~~l~e~GV~~~p~------------------------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
...+...|.++||.++.+ .+.+|+++...+|++|||++++.|+++++++.+
T Consensus 301 -~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~~ 375 (379)
T TIGR03402 301 -GEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLRA 375 (379)
T ss_pred -HHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 356777888899998742 257999999999999999999999998877653
No 142
>PRK05764 aspartate aminotransferase; Provisional
Probab=99.56 E-value=1.1e-12 Score=149.38 Aligned_cols=212 Identities=15% Similarity=0.103 Sum_probs=134.9
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhc--CCCC-cEE--EeccccC-
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL--GCVP-DIA--CYGKLLT- 692 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~--gv~P-Div--t~sKgLg- 692 (863)
.+.+++.| ++..|.+. +.+.+++|.++|++||+++|+||++..+...|.. ...... +..+ +++ +|||.++
T Consensus 166 ~~v~~~~p--~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~ 242 (393)
T PRK05764 166 KALILNSP--SNPTGAVY-SPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAM 242 (393)
T ss_pred eEEEEECC--CCCCCccc-CHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccC
Confidence 34566667 67788654 6678999999999999999999999766332332 111111 2222 222 5899998
Q ss_pred CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 693 gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
.| +++|++++++++++.+... ....+...+++++.++.+.|+. ..++.+++++..++.++.+ .+.++
T Consensus 243 ~G-~RiG~i~~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l----~~~L~ 309 (393)
T PRK05764 243 TG-WRLGYAAGPKELIKAMSKL------QSHSTSNPTSIAQYAAVAALNG--PQDEVEEMRQAFEERRDLM----VDGLN 309 (393)
T ss_pred cc-ceeEEEecCHHHHHHHHHH------HhhcccCCChHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHH----HHHHh
Confidence 78 7999999999999987641 1123445678888888877752 2334444444444444433 33445
Q ss_pred cCCCeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHH
Q 002941 773 SHRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 773 ~~p~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~ 845 (863)
+++.+.-.++.| .++.+.+........ ....++...|+ ++||.+.++ ++.+|+. +..+++++++++++
T Consensus 310 ~~~g~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis--~~~~~~~~~~~i~~ 384 (393)
T PRK05764 310 EIPGLECPKPEGAFYVFPNVSKLLGKSI---TDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLS--YATSLEDLEEGLER 384 (393)
T ss_pred hCCCCcccCCCcceEEEEeccccccccc---CCHHHHHHHHHHhCCEEEccccccCCCCEEEEE--ecCCHHHHHHHHHH
Confidence 554443344555 455556643210000 01356777765 579999874 2678886 45689999999999
Q ss_pred HHHHHHH
Q 002941 846 LYQRLEE 852 (863)
Q Consensus 846 L~~~l~~ 852 (863)
|.+++++
T Consensus 385 l~~~~~~ 391 (393)
T PRK05764 385 IERFLES 391 (393)
T ss_pred HHHHHHh
Confidence 9988764
No 143
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=99.56 E-value=6e-13 Score=150.36 Aligned_cols=322 Identities=9% Similarity=0.064 Sum_probs=208.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
..+|+..+ .+.+|. +|.+.+++.+.+....+ ++..-..+|.+.|+++++-. .+.++++++++|++..+++
T Consensus 30 ~~i~l~~n--en~~~~--~~~v~~a~~~~~~~~~~-----Yp~~g~~~Lr~aia~~~~~~-~~~I~vt~Gs~e~i~~~~~ 99 (366)
T PRK01533 30 SFVKLASN--ENPFGC--SPRVLDELQKSWLDHAL-----YPDGGATTLRQTIANKLHVK-MEQVLCGSGLDEVIQIISR 99 (366)
T ss_pred ceEEeCCC--CCCCCC--CHHHHHHHHHHHHhcCc-----CCCCCHHHHHHHHHHHhCCC-cceEEECCCHHHHHHHHHH
Confidence 56776653 456774 79999999887665332 22333456777788777643 4689999999999988887
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
...+ .| ..|++..-+|.+....+... | .
T Consensus 100 ~l~~---------~g------------d~vlv~~P~y~~~~~~~~~~-g------------------------------~ 127 (366)
T PRK01533 100 AVLK---------AG------------DNIVTAGATFPQYRHHAIIE-G------------------------------C 127 (366)
T ss_pred HhcC---------CC------------CEEEEcCCcHHHHHHHHHHc-C------------------------------C
Confidence 6521 12 46888887776653322111 0 0
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..+++|... ..-| .+.+++.+. ++.-..+|+.| ++..|.+. +
T Consensus 128 ~v~~v~~~~--------------------~~~d--------~~~l~~~~~-------~~~~~v~i~~P--~NPTG~~~-~ 169 (366)
T PRK01533 128 EVKEVALNN--------------------GVYD--------LDEISSVVD-------NDTKIVWICNP--NNPTGTYV-N 169 (366)
T ss_pred EEEEeecCC--------------------CCcC--------HHHHHHHhC-------cCCcEEEEeCC--CCCCCCCc-C
Confidence 011111000 0001 234444443 12335566778 79999766 6
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~ 714 (863)
.+.+++|.++|++++ ++|+||++..|-..+.. .......-.+.++ +|||.++ .| +.+|++++++++++.+...
T Consensus 170 ~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G-lRiG~~i~~~~~~~~l~~~ 247 (366)
T PRK01533 170 DRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLAS-FRVGYAVGHEELIEKLNVV 247 (366)
T ss_pred HHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChH-HHHhHHhCCHHHHHHHHHh
Confidence 677888889998876 57789999777322211 1111122234444 6799998 77 8999999999999988641
Q ss_pred CccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccC
Q 002941 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (863)
Q Consensus 715 ~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~ 794 (863)
..+++.++++.+++.++|+ +.++.+.+.+..+..++.+.. .++.++ +......|.++.+.+. +
T Consensus 248 --------~~~~~~~~~~q~aa~~~l~---~~~~~~~~~~~~~~~r~~~~~----~l~~~g-~~~~~~~~nf~~~~~~-~ 310 (366)
T PRK01533 248 --------RLPFNVSSLAQKAATIAFG---DDEFIEEIVRVNTEGLRQYES----FCKENE-IPFYQSQTNFIFLPVE-N 310 (366)
T ss_pred --------cCCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHH----HHHhCC-CccCCCcCcEEEEeCC-C
Confidence 1356788899998888885 556666665555555554433 333332 2234567888888763 2
Q ss_pred CcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
...+...|+++||.+++..+.+|++ +.+.++.+.++++|++.++..
T Consensus 311 ----------~~~~~~~l~~~GI~Vr~~~~~iRis---~~~~~~~~~l~~al~~~~~~~ 356 (366)
T PRK01533 311 ----------GGEIYEACAHAGFIIRPFPNGVRIT---VGTREQNEGVISVLQQHFENK 356 (366)
T ss_pred ----------HHHHHHHHHHCCcEEccCCCceEEe---CCCHHHHHHHHHHHHHHHHhc
Confidence 3468899999999999988889997 778999999999998876543
No 144
>PRK07324 transaminase; Validated
Probab=99.56 E-value=5e-13 Score=151.37 Aligned_cols=203 Identities=17% Similarity=0.114 Sum_probs=135.2
Q ss_pred EEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcE---EEeccccC-CCCCC
Q 002941 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDI---ACYGKLLT-GGVIP 697 (863)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDi---vt~sKgLg-gG~~P 697 (863)
.++..| ++..|.+ .+++.+++|.++|++||+++|+||++.++...+..... ....++. -+|||.++ .| ++
T Consensus 157 i~i~~p--~NPtG~~-~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~--~~~~~~~I~~~s~SK~~~~~G-~R 230 (373)
T PRK07324 157 ICINNA--NNPTGAL-MDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSI--ADLYEKGISTNSMSKTYSLPG-IR 230 (373)
T ss_pred EEEeCC--CCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCCh--hhccCCEEEEecchhhcCCcc-ce
Confidence 344455 7888854 47888999999999999999999999888554432111 1122332 37899987 67 89
Q ss_pred ceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 002941 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (863)
Q Consensus 698 igav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v 777 (863)
+|++++++++++.+..- ....+++.++++..++..+|+. .+.+.++.++..+..++. +.+.+++++.+
T Consensus 231 iG~i~~~~~li~~~~~~------~~~~~~~~~~~~q~~a~~~l~~--~~~~l~~~~~~~~~~~~~----l~~~l~~~~~~ 298 (373)
T PRK07324 231 VGWIAANEEVIDILRKY------RDYTMICAGVFDDMLASLALEH--RDAILERNRKIVRTNLAI----LDEWVAKEPRV 298 (373)
T ss_pred eEEEecCHHHHHHHHHH------hCcEEecCChHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHH----HHHHHhcCCCc
Confidence 99999999999887642 2234566778888877777652 223344444443333333 33445556666
Q ss_pred eEecccce-EEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecC-----CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 778 QRVVALGT-LCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 778 ~~vrg~Gl-~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g-----~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
..++..|. +..+.+.... ...+++.+|+ ++||++.|+. +.+|+. +..+++.+.+.+++|.+++
T Consensus 299 ~~~~p~gg~~~~i~~~~~~--------~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis--~~~~~~~l~~~l~rl~~~l 368 (373)
T PRK07324 299 SYVKPKAVSTSFVKLDVDM--------PSEDFCLKLLKETGVLLVPGNRFDLEGHVRIG--YCCDTETLKKGLKKLSEFL 368 (373)
T ss_pred eEECCCceEEEEEEeCCCC--------CHHHHHHHHHHhcCEEEECccccCCCCeEEEE--ecCCHHHHHHHHHHHHHHH
Confidence 55666654 3445554221 2456777765 6799999852 678875 4567899999999999888
Q ss_pred HH
Q 002941 851 EE 852 (863)
Q Consensus 851 ~~ 852 (863)
++
T Consensus 369 ~~ 370 (373)
T PRK07324 369 RE 370 (373)
T ss_pred Hh
Confidence 65
No 145
>PRK06207 aspartate aminotransferase; Provisional
Probab=99.56 E-value=4.4e-12 Score=145.26 Aligned_cols=345 Identities=14% Similarity=0.062 Sum_probs=204.1
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc--ccCCCCCChHHHHHHHHHHhhcCCC-CC-CeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKG-WA-SRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~p~~-~~-~~v~f~~SGSeAvE 475 (863)
..+|+..|.-. .++ -.|.+.+++.+.+.+... +....+..+....+++.+.+..+.. .. +.+++++++++|+.
T Consensus 40 ~~i~l~~g~~~-~~~--p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~ 116 (405)
T PRK06207 40 RPVDFSHGDVD-AHE--PTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALF 116 (405)
T ss_pred CceecCCcCCC-CCC--CCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 56676654433 333 357888888887765321 1111223445667777777765521 12 57999999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.+++.... .| ..|++..-+|.+....+...+.
T Consensus 117 ~~~~~l~~---------~G------------d~Vlv~~P~y~~~~~~~~~~g~--------------------------- 148 (405)
T PRK06207 117 LAVAATVA---------RG------------DKVAIVQPDYFANRKLVEFFEG--------------------------- 148 (405)
T ss_pred HHHHHhcC---------CC------------CEEEEeCCCchhHHHHHHHcCC---------------------------
Confidence 88876521 12 5799999998775432221110
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
..+++|-.+ . + ..+.+ .-| .+.+++.+.. ..-+.+++.| ++..|.
T Consensus 149 ----~v~~v~~~~---------~--~-~~~~~--~~d--------~~~l~~~~~~-------~~k~v~l~~P--~NPTG~ 193 (405)
T PRK06207 149 ----EMVPVQLDY---------L--S-ADKRA--GLD--------LDQLEEAFKA-------GVRVFLFSNP--NNPAGV 193 (405)
T ss_pred ----EEEEEeccc---------c--C-cccCC--CcC--------HHHHHHhhhh-------cCeEEEECCC--CCCCCc
Confidence 001111000 0 0 00000 011 2345555532 2234667778 788886
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcCCCCc-EE---EeccccC-CCCCCceeeeccHHHHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD-IA---CYGKLLT-GGVIPLAATLATNAVFD 709 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PD-iv---t~sKgLg-gG~~Pigav~~~~~i~~ 709 (863)
+. +.+-+++|.++|++||+++|.||++..|-..|..+ ....+...+| ++ +|||.++ .| +.+|++++++++++
T Consensus 194 ~~-s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpG-lRiG~ii~~~~l~~ 271 (405)
T PRK06207 194 VY-SAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSG-YRLGVAFGSPAIID 271 (405)
T ss_pred CC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcc-cceEEEEcCHHHHH
Confidence 55 67889999999999999999999998774344321 1112222233 33 5799998 78 89999999999998
Q ss_pred hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc-cceEEE
Q 002941 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-LGTLCA 788 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-~Gl~~~ 788 (863)
.+.... ...+.+.+.++.+++.+.|+- ..++.++..+..+..++.+ .+.+.+++.+.-... -|+++.
T Consensus 272 ~~~~~~------~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~r~~l----~~~L~~~~~~~~~~p~gg~fl~ 339 (405)
T PRK06207 272 RMEKLQ------AIVSLRAAGYSQAVLRTWFSE--PDGWMKDRIARHQAIRDDL----LRVLRGVEGVFVRAPQAGSYLF 339 (405)
T ss_pred HHHHHH------hHhccCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHH----HHHHhcCCCceecCCCeeEEEE
Confidence 876411 122334455666666666641 2233333333333334333 344445544433333 467888
Q ss_pred EEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 789 IELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 789 iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+.+.... .....++..|+ ++||.+.|+ .+.+|++. ..+++++++.+++|.++++++
T Consensus 340 ~~l~~~~-------~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~--~~~~~~l~~al~rl~~~l~~~ 403 (405)
T PRK06207 340 PRLPRLA-------VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNF--SQDHAAAVAAAERIAQLIERY 403 (405)
T ss_pred EeCcccC-------CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHHHHh
Confidence 8875321 01456888887 689999873 25788864 457899999999999888654
No 146
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.56 E-value=9.2e-13 Score=147.73 Aligned_cols=210 Identities=12% Similarity=0.012 Sum_probs=131.0
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVI 696 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~ 696 (863)
++.+|++-.. ++..|.+.+ +++|.++|++||+++++|++| ++|.. .+....+ .+|+++. .|.++++ .
T Consensus 124 ~~~~v~i~~~-~~~~G~~~~----~~~i~~~a~~~~~~li~D~~~-~~g~~--~~~~~~~--~~d~~~~s~~K~l~~p-~ 192 (356)
T cd06451 124 DIKAVTLTHN-ETSTGVLNP----LEGIGALAKKHDALLIVDAVS-SLGGE--PFRMDEW--GVDVAYTGSQKALGAP-P 192 (356)
T ss_pred CCCEEEEecc-CCCcccccC----HHHHHHHHHhcCCEEEEeeeh-hccCc--ccccccc--CccEEEecCchhccCC-C
Confidence 3445555444 677887766 889999999999999999998 46532 2222222 3577755 6999876 4
Q ss_pred CceeeeccHHHHHhhhc-CCcccee---------ec---ccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 002941 697 PLAATLATNAVFDSFVG-DSKLKAL---------LH---GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELW 763 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~-~~~~~~~---------~~---~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l 763 (863)
.+|+++++++.++.+.. ......+ .. ..+.+.++.+++++.++++.+.+.+ .+++.+....+.+.+
T Consensus 193 g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~-~~~~~~~~~~~~~~l 271 (356)
T cd06451 193 GLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEG-LENRWARHRRLAKAL 271 (356)
T ss_pred CcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHH
Confidence 68899999998887652 0000000 00 1223346777788889998875533 233344444444444
Q ss_pred HHHHHHHHhcCCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec-----CCEEEEecCCCCcH
Q 002941 764 DLELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMCGPCSSP 836 (863)
Q Consensus 764 ~~~l~~~~~~~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-----g~~lr~~ppl~~t~ 836 (863)
.+.+.+. ....+....+ .+.+..+.+.... ....+++.|.++ ||++.+. ++.+|+++...+|+
T Consensus 272 ~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~ 341 (356)
T cd06451 272 REGLEAL--GLKLLAKPELRSPTVTAVLVPEGV--------DGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATR 341 (356)
T ss_pred HHHHHHc--CCeeccCcccCCCceEEEECCCCC--------CHHHHHHHHHHhCCEEEecccccccCCEEEEecCCCCCH
Confidence 4443321 1222211112 2233334332211 256789999998 9999753 46899999889999
Q ss_pred HHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRL 850 (863)
Q Consensus 837 eeid~~v~~L~~~l 850 (863)
||+++++++|++++
T Consensus 342 e~v~~~~~~l~~~~ 355 (356)
T cd06451 342 EDVLGVLSALEEAL 355 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998865
No 147
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=99.56 E-value=4.5e-12 Score=146.30 Aligned_cols=201 Identities=13% Similarity=0.054 Sum_probs=132.4
Q ss_pred EEEEE-ccccccCCCceeCCHHHHHHHHHHHHHc-CCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccCCCC
Q 002941 621 GALII-EPVVHAAGGMHMVDPLFQRILVKECQNR-KIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLTGGV 695 (863)
Q Consensus 621 AAvIv-EPViqg~gG~~~pp~~fL~~Lrelc~~~-gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLggG~ 695 (863)
+.+++ .| ++..|... +.+.+++|.++|++| ++++|.||++..|...+..-... ...+.++ +|||.++.|
T Consensus 214 ~i~~~p~p--~NPTG~~~-s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~--~~~~~vi~~~SfSK~~~~G- 287 (431)
T PRK15481 214 AVILTPRA--HNPTGCSL-SARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIP--QTTQRWALIRSVSKALGPD- 287 (431)
T ss_pred EEEECCCC--CCCCCccC-CHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCc--CCCCCEEEEeeeccccCCC-
Confidence 34555 66 88888665 788899999999999 99999999998773222111111 1123443 789999988
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhh---HHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQT---NHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l---~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
+.+|++++++++++.+... ....+++.+.+++.++.++|+ +.++ .+++++..+..++.+. +.+.
T Consensus 288 lRiG~~i~~~~~~~~~~~~------~~~~~~~~s~~~q~a~~~~l~---~~~~~~~l~~~~~~~~~~r~~~~----~~L~ 354 (431)
T PRK15481 288 LRLAFVASDSATSARLRLR------LNSGTQWVSHLLQDLVYACLT---DPEYQARLAQARLFYAQRRQKLA----RALQ 354 (431)
T ss_pred ceeEEEeCCHHHHHHHHHH------HhccccCCCHHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 8999999999998887531 122334567888888888776 3333 3333333333344333 3333
Q ss_pred cCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------CCEEEEecCCCCcHHHHHHHHH
Q 002941 773 SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 773 ~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------g~~lr~~ppl~~t~eeid~~v~ 844 (863)
++..-.....-|+++.+.+..+ ...++..|.++||.+.|+ ++.+|+... ..++++++++++
T Consensus 355 ~~~~~~~~p~gg~f~~~~l~~~----------~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~-~~~~~~i~~~~~ 423 (431)
T PRK15481 355 QYGIAIPSPGDGLNLWLPLDTD----------SQATALTLAKSGWLVREGEAFGVSAPSHGLRITLS-TLNDAEINRLAA 423 (431)
T ss_pred HcCCccccCCCeEEEEEECCCC----------HHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcC-CCChHHHHHHHH
Confidence 3332111244577777877532 356788888999999873 146888632 357899999999
Q ss_pred HHHHHHH
Q 002941 845 KLYQRLE 851 (863)
Q Consensus 845 ~L~~~l~ 851 (863)
+|.+++.
T Consensus 424 ~l~~~~~ 430 (431)
T PRK15481 424 DLHQALN 430 (431)
T ss_pred HHHHHhc
Confidence 9988864
No 148
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.55 E-value=3.1e-12 Score=145.55 Aligned_cols=328 Identities=16% Similarity=0.139 Sum_probs=208.4
Q ss_pred CcHHHHHHHHHHHHhcc-cccCCCCCChHHHHHHHHHHhhcCCC-CC-CeEEEeCChhhHHHHHHHHHHHHHHhhccccc
Q 002941 417 LQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WA-SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLV 493 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~p~~-~~-~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~t 493 (863)
..+.+.+|+.+++.... +++...+.-+....+++++....+.. .. +.|+.++++++|+-.++...+. .
T Consensus 42 ~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~~---------p 112 (393)
T COG0436 42 TPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLN---------P 112 (393)
T ss_pred CCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhcC---------C
Confidence 46789999999988764 33333444556666777777665421 11 3499999999999999876631 2
Q ss_pred cccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhc
Q 002941 494 DFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (863)
Q Consensus 494 gr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~ 573 (863)
| ..||..+-+|=........+++.. +++|-..
T Consensus 113 G------------DeVlip~P~Y~~y~~~~~~~gg~~-------------------------------v~v~l~~----- 144 (393)
T COG0436 113 G------------DEVLIPDPGYPSYEAAVKLAGGKP-------------------------------VPVPLDE----- 144 (393)
T ss_pred C------------CEEEEeCCCCcCHHHHHHhcCCEE-------------------------------EEEeCCc-----
Confidence 2 469998888855543333332211 1111000
Q ss_pred cccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc
Q 002941 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (863)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~ 653 (863)
. ..-|. -| .+.+++.+. +..-+.++.-| .+..|. +.+++++++|.++|++|
T Consensus 145 -------~--~~~f~--~d--------~~~l~~~i~-------~ktk~i~ln~P--~NPTGa-v~~~~~l~~i~~~a~~~ 195 (393)
T COG0436 145 -------E--ENGFK--PD--------LEDLEAAIT-------PKTKAIILNSP--NNPTGA-VYSKEELKAIVELAREH 195 (393)
T ss_pred -------C--ccCCc--CC--------HHHHHhhcC-------ccceEEEEeCC--CCCcCc-CCCHHHHHHHHHHHHHc
Confidence 0 00000 11 234555543 23446666688 788885 55889999999999999
Q ss_pred CCeEEEecccccccccCC--cchhhhcCCCCc-EE---EeccccC-CCCCCceeeecc-HHHHHhhhcCCccceeecccC
Q 002941 654 KIPVIFDEVFTGFWRLGV--ETTADLLGCVPD-IA---CYGKLLT-GGVIPLAATLAT-NAVFDSFVGDSKLKALLHGHS 725 (863)
Q Consensus 654 gilLI~DEV~TGfGRtG~--~~a~e~~gv~PD-iv---t~sKgLg-gG~~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T 725 (863)
|+++|+|||+.+|...|. ....+..+- -| .+ .|||..+ .| +.+|+++++ +++.+.+.. +....+
T Consensus 196 ~i~ii~DEiY~~l~yd~~~~~s~~~~~~~-~~~~i~i~s~SK~~~mtG-wRvG~~v~~~~~l~~~~~~------~~~~~~ 267 (393)
T COG0436 196 DIIIISDEIYEELVYDGAEHPSILELAGA-RDRTITINSFSKTYGMTG-WRIGWVVGPPEELIAALRK------LKSYLT 267 (393)
T ss_pred CeEEEEehhhhhcccCCCCcCCHhhcCCC-cceEEEEecccccccccc-cceeEeecChHHHHHHHHH------HHHhcc
Confidence 999999999999987774 222222221 13 33 5799776 56 999999999 888887762 123345
Q ss_pred CCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec-ccceEEEE-EEccCCcCCCCchH
Q 002941 726 YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV-ALGTLCAI-ELQAAGCNAGYGSL 803 (863)
Q Consensus 726 ~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr-g~Gl~~~i-el~~~~~~~~~~~~ 803 (863)
++.+.++..||.++|+.-++.++.+..++.-++.++.+ .+.+.+.+.+..+. ..|.|+.+ .+....
T Consensus 268 ~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l----~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~~-------- 335 (393)
T COG0436 268 SCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLL----VEALNEIGGLSVVKPPEGAFYLFPKIPELL-------- 335 (393)
T ss_pred cCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHH----HHHHHhcCCeeeccCCCeeEEEEeecCCCC--------
Confidence 67888999999999985422234454444444444433 34455566555555 55666554 443211
Q ss_pred HHHHHHHHHHH-CCcEEEec---C-----CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 804 YAASLLKKLRE-DGVYMRPL---G-----NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 804 ~~~~l~~~l~e-~GV~~~p~---g-----~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
...+|+..|++ .||.+.|+ | +.+|+ +++.++++++++++++.+.+..
T Consensus 336 d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRi--s~~~~~~~l~~a~~rl~~~~~~ 391 (393)
T COG0436 336 DSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRL--SLATSEETLEEALRRLARFLAE 391 (393)
T ss_pred CHHHHHHHHHHhCCEEEecccccCCCCCCCeEEE--EEecCHHHHHHHHHHHHHHHHh
Confidence 25667777775 58999873 2 46777 4677789999999999988765
No 149
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=99.55 E-value=3e-12 Score=143.55 Aligned_cols=319 Identities=15% Similarity=0.154 Sum_probs=215.8
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcC-CCCCCeEEEeCChhhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG-KGWASRAYFSDNGSTAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p-~~~~~~v~f~~SGSeAvE~AL 478 (863)
..+|+.+ .-+++|- .|.+.+++.+.++.+. .|+.+...+|.+++++..+ .. .+.|+.+|+..|..+..+
T Consensus 23 ~~i~Lss--NenP~gp--~~~~~~~~~~~~~~~~-----rYPd~~~~~l~~a~a~~~~~~~-~~~V~~gnGsde~i~~l~ 92 (356)
T COG0079 23 GIIKLSS--NENPYGP--PPKVIEAIRAALDKLN-----RYPDPDYRELRAALAEYYGVVD-PENVLVGNGSDELIELLV 92 (356)
T ss_pred cceeecC--CCCCCCC--CHHHHHHHHHHHHhhc-----cCCCCcHHHHHHHHHHHhCCCC-cceEEEcCChHHHHHHHH
Confidence 3566664 2466774 5899999998887543 3455567889999998877 33 468898999999998888
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
++... .| .+|+....+|.-....+...+..
T Consensus 93 ~~~~~---------~g------------d~vl~~~Ptf~~Y~~~a~~~g~~----------------------------- 122 (356)
T COG0079 93 RAFVE---------PG------------DTVLIPEPTFSMYEIAAQLAGAE----------------------------- 122 (356)
T ss_pred HHhhc---------CC------------CEEEEcCCChHHHHHHHHhcCCe-----------------------------
Confidence 76621 12 47999888886654444332210
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
++.++... + . .| .+.+...+. .+.-..+|+.| .+..|..+
T Consensus 123 ~~~v~~~~-~-------------------~--~d--------~~~~~~~~~-------~~~~lv~i~nP--NNPTG~~~- 162 (356)
T COG0079 123 VVKVPLKE-F-------------------R--LD--------LDAILAAIR-------DKTKLVFLCNP--NNPTGTLL- 162 (356)
T ss_pred EEEecccc-c-------------------c--cC--------HHHHHHhhh-------cCCCEEEEeCC--CCCCCCCC-
Confidence 11111111 1 0 11 112222332 12345788999 68888766
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCc-EE---EeccccC-CCCCCceeeeccHHHHHhhhc
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA---CYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD-iv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~ 713 (863)
+.+-++++.+.|.+ +++||+||++..|+. .-...... .++ ++ ||||++| .| +.+|++++++++++.+..
T Consensus 163 ~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~---~~~~~l~~-~~~nlivlRTfSKa~gLAG-lRlGy~ia~~~~i~~l~~ 236 (356)
T COG0079 163 PREELRALLEALPE-GGLVVIDEAYIEFSP---ESSLELLK-YPPNLIVLRTFSKAFGLAG-LRVGYAIANPELIAALNK 236 (356)
T ss_pred CHHHHHHHHHhCCC-CcEEEEeCchhhcCC---chhhhhcc-CCCCEEEEEecHHhhhcch-hceeeccCCHHHHHHHHH
Confidence 55557777777777 999999999998855 22222222 344 55 8999776 56 899999999999999985
Q ss_pred CCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee-EecccceEEEEEEc
Q 002941 714 DSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ-RVVALGTLCAIELQ 792 (863)
Q Consensus 714 ~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~-~vrg~Gl~~~iel~ 792 (863)
....|.-|-++.+++.++|+. .++.+..++....-++++ .+.+++++ +. -..+.+.|+.+.+.
T Consensus 237 --------vr~p~~v~~~a~~aa~aal~~---~~~~~~~~~~~~~~r~rl----~~~l~~~~-~~~v~pS~aNFvlv~~~ 300 (356)
T COG0079 237 --------VRPPFNVSSPALAAAIAALRD---ADYLEESVERIREERERL----YAALKALG-LFGVFPSQANFVLVRVP 300 (356)
T ss_pred --------hcCCCCCCHHHHHHHHHHccc---HHHHHHHHHHHHHHHHHH----HHHHHhCC-CCeecCCCCcEEEEECC
Confidence 335677888999999998873 355555566555555544 44555665 33 34556888888876
Q ss_pred cCCcCCCCchHHHHHHHHHHHHCCcEEEecC------CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 793 AAGCNAGYGSLYAASLLKKLREDGVYMRPLG------NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 793 ~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g------~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
+ . . +..+.+.|+++||++|.+. +.+|++ +-|+||.++++++|.+++..
T Consensus 301 ~-~-------~-~~~l~~~L~~~giivR~~~~~~~~~~~lRit---vgt~een~~ll~AL~~~~~~ 354 (356)
T COG0079 301 D-A-------E-AAALAEALLKKGILVRDCSSVGLLPGYLRIT---VGTPEENDRLLAALREVLKG 354 (356)
T ss_pred C-c-------c-HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEE---eCCHHHHHHHHHHHHHHHhc
Confidence 4 1 2 5578999999999999864 489987 67889889999999887754
No 150
>PRK08960 hypothetical protein; Provisional
Probab=99.54 E-value=5.6e-12 Score=143.39 Aligned_cols=323 Identities=13% Similarity=0.053 Sum_probs=190.6
Q ss_pred cHHHHHHHHHHHHhc--ccccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccc
Q 002941 418 QIELARDMGYTAARF--GHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~--~~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tg 494 (863)
.+.+.+++.+.+... .+.. ..+..+....+++.+....+.+ ..+.+++++++++|...++.+... .|
T Consensus 47 ~~~v~~a~~~~~~~~~~~Y~~-~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~---------~g 116 (387)
T PRK08960 47 AEPIVAAGQAALAAGHTRYTA-ARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVD---------PG 116 (387)
T ss_pred CHHHHHHHHHHHhcCCCccCC-CCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhcC---------CC
Confidence 588999988887642 1211 1222334455565555432211 136899999999999988865421 12
Q ss_pred ccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcc
Q 002941 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (863)
Q Consensus 495 r~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~ 574 (863)
..|++.+-+|.+........+. .+..++....
T Consensus 117 ------------d~vlv~~p~y~~~~~~~~~~g~-----------------------------~~~~v~~~~~------- 148 (387)
T PRK08960 117 ------------KHWLLADPGYPCNRHFLRLVEG-----------------------------AAQLVPVGPD------- 148 (387)
T ss_pred ------------CEEEEcCCCCcchHHHHHhcCC-----------------------------eEEEEecCcc-------
Confidence 5688888888775432221110 0011111100
Q ss_pred ccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC
Q 002941 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (863)
Q Consensus 575 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g 654 (863)
..|. -| .+.+++.+. ++....+++.| ++..|... +.+.+++|.++|++||
T Consensus 149 ----------~~~~--~d--------~~~l~~~~~-------~~~~~i~i~~p--~NPtG~~~-~~~~~~~l~~~~~~~~ 198 (387)
T PRK08960 149 ----------SRYQ--LT--------PALVERHWN-------ADTVGALVASP--ANPTGTLL-SRDELAALSQALRARG 198 (387)
T ss_pred ----------cCCC--CC--------HHHHHHHhC-------ccceEEEEECC--CCCCCcCc-CHHHHHHHHHHHHHcC
Confidence 0000 01 134444443 23456778888 78888665 6788999999999999
Q ss_pred CeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccH
Q 002941 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHA 730 (863)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~p 730 (863)
+++|+||++..|-..+... ......++++ +|||.+| .| +++|++++++++++.+..- ....+.+.+.
T Consensus 199 ~~li~De~Y~~~~~~~~~~--~~~~~~~~vi~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~------~~~~~~~~s~ 269 (387)
T PRK08960 199 GHLVVDEIYHGLTYGVDAA--SVLEVDDDAFVLNSFSKYFGMTG-WRLGWLVAPPAAVPELEKL------AQNLYISAST 269 (387)
T ss_pred CEEEEEccccccccCCCCC--ChhhccCCEEEEeecccccCCcc-cEEEEEEcCHHHHHHHHHH------HhhhccCCCH
Confidence 9999999998773222211 1233456766 4799996 77 8999999999999877531 1223445677
Q ss_pred HHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-cccceEEEEEEccCCcCCCCchHHHHHHH
Q 002941 731 LGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLL 809 (863)
Q Consensus 731 la~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~ 809 (863)
++..++.++|+- +..++..++++..+..++.+ .+.+++++....+ ..-|.++.+++.+.. .....++
T Consensus 270 ~~q~a~~~~l~~-~~~~~l~~~~~~~~~~~~~l----~~~L~~~~~~~~~~p~g~~f~~~~~~~~~-------~~~~~~~ 337 (387)
T PRK08960 270 PAQHAALACFEP-ETLAILEARRAEFARRRDFL----LPALRELGFGIAVEPQGAFYLYADISAFG-------GDAFAFC 337 (387)
T ss_pred HHHHHHHHHhhc-CcHHHHHHHHHHHHHHHHHH----HHHHHhcCCcCCcCCCeeEEEEEeccccC-------CCHHHHH
Confidence 887777777642 11233344444333334433 3344445432112 334677777775411 0145677
Q ss_pred HHHH-HCCcEEEec--------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 810 KKLR-EDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 810 ~~l~-e~GV~~~p~--------g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+.|+ ++||.+.|+ ++.+|++.. .+.+.+.+++++|.++++
T Consensus 338 ~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~--~~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 338 RHFLETEHVAFTPGLDFGRHQAGQHVRFAYT--QSLPRLQEAVERIARGLR 386 (387)
T ss_pred HHHHHhCCEEEcCchHhCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 7766 689999873 257888644 367777777777766553
No 151
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.53 E-value=9.3e-12 Score=142.05 Aligned_cols=341 Identities=10% Similarity=0.053 Sum_probs=198.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCC-------hHHHHHHHHHHhhcCCCCCCeEEEeCChhh
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-------EPALECAELLLQGVGKGWASRAYFSDNGST 472 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~-------~~~~eLae~L~~~~p~~~~~~v~f~~SGSe 472 (863)
-|||..+ .|. -.+.+.+|+.+.+....... ....+ +...++.+.|+++++....+.+.|++++++
T Consensus 18 iyld~a~------~~~-~p~~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~ 89 (398)
T TIGR03392 18 VYLDSAA------TAL-KPQAVIDATQQFYRLSSGTV-HRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTE 89 (398)
T ss_pred EEeeCcc------ccC-CCHHHHHHHHHHHHhcCCCC-CCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHH
Confidence 6788443 343 45788888888775432111 01111 234567788888887421367999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCc
Q 002941 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (863)
Q Consensus 473 AvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (863)
++..++..... .... . ..+||+....|++.......+.. ..+.
T Consensus 90 ~l~~~~~~~~~---~~~~--~------------gd~Vl~~~~~~~s~~~~~~~~~~--------------~~g~------ 132 (398)
T TIGR03392 90 SINLVAQSYAR---PRLQ--P------------GDEIIVSEAEHHANLIPWLMVAQ--------------QTGA------ 132 (398)
T ss_pred HHHHHHHHhhh---ccCC--C------------CCEEEECCcchhHHHHHHHHHHH--------------HcCc------
Confidence 99988875411 0000 1 15788888888763211111100 0000
Q ss_pred ccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 002941 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (863)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~ 632 (863)
.+..++.+..+ .-| .+.+++.+. + +..+|++.-+ ++.
T Consensus 133 -----~v~~v~~~~~~---------------------~~~--------~~~l~~~i~-------~-~t~lv~i~~~-~n~ 169 (398)
T TIGR03392 133 -----KVVKLPIGADL---------------------LPD--------IRQLPELLT-------P-RTRILALGQM-SNV 169 (398)
T ss_pred -----EEEEEecCCCC---------------------CcC--------HHHHHHHhc-------c-CceEEEEECc-ccc
Confidence 01111111000 001 234555553 2 2344454443 788
Q ss_pred CCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHh
Q 002941 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDS 710 (863)
Q Consensus 633 gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~ 710 (863)
.|.+.+ +++|.++|++||+++|+|++|. +|.. ..... ...+|++++| |.++- .-+|++++++++++.
T Consensus 170 tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~~--~~~~~--~~~~d~~~~s~~K~~gp--~G~G~l~~~~~~~~~ 238 (398)
T TIGR03392 170 TGGCPD----LARAITLAHQYGAVVVVDGAQG-VVHG--PPDVQ--ALDIDFYAFSGHKLYGP--TGIGVLYGKTELLEA 238 (398)
T ss_pred ccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCC--CCChh--hcCCCEEEEecccccCC--CceEEEEEcHHHHhh
Confidence 888876 8899999999999999999994 4432 11222 2347999998 95542 237888899998876
Q ss_pred hhcCCcccee--------------eccc-CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 711 FVGDSKLKAL--------------LHGH-SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 711 l~~~~~~~~~--------------~~~~-T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+......... ...+ +-+.|..++++..++++.+++.++ +++.+....+.+.+. +.+.+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~-~~i~~~~~~l~~~l~----~~l~~l~ 313 (398)
T TIGR03392 239 MPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDI-AAAEAWSVSLADLAE----ERLAQLP 313 (398)
T ss_pred CCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHH----HHHhcCC
Confidence 6421000000 0000 013455678888888888755443 355555555665443 3344555
Q ss_pred CeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------------CCEEEEecCCCCcHHHHHH
Q 002941 776 TVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQ 841 (863)
Q Consensus 776 ~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------------g~~lr~~ppl~~t~eeid~ 841 (863)
.+.-.. ....++.+.+.... ...+.+.|.++||.+++. ++.+|+++...+|++|+++
T Consensus 314 g~~~~~~~~~~i~~~~~~~~~---------~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~ 384 (398)
T TIGR03392 314 GFRSFRCPGSSLLAFDFAGVH---------HSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDA 384 (398)
T ss_pred CeEEeCCCCCcEEEEEeCCcC---------HHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHH
Confidence 432221 12345555554221 356788889999999753 2589999988899999999
Q ss_pred HHHHHHHHHHHH
Q 002941 842 LLLKLYQRLEEF 853 (863)
Q Consensus 842 ~v~~L~~~l~~l 853 (863)
++++|+++++.+
T Consensus 385 l~~~l~~~~~~~ 396 (398)
T TIGR03392 385 LVDAVGAALELL 396 (398)
T ss_pred HHHHHHHHHHHh
Confidence 999999887754
No 152
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.53 E-value=1.1e-11 Score=141.60 Aligned_cols=342 Identities=11% Similarity=0.072 Sum_probs=198.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCC------CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPE------NVYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~------~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeA 473 (863)
-|||..+ .|- -.+.+.+|+.+.++........+ ...+...++.++|+++++....+.|.|++|++++
T Consensus 21 ~yld~a~------~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~ 93 (401)
T PRK10874 21 VYLDSAA------TAL-KPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTES 93 (401)
T ss_pred EEEeCCc------ccC-CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHH
Confidence 6888443 343 45788888887776532111000 0123455777888888875224689999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcc
Q 002941 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (863)
Q Consensus 474 vE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (863)
+..+++.... . ....| .+||+.+..|++.......+.. . . +.
T Consensus 94 i~~~~~~~~~---~--~~~~g------------d~vl~~~~~~~s~~~~~~~~~~--~-~-----------g~------- 135 (401)
T PRK10874 94 INLVAQSYAR---P--RLQPG------------DEIIVSEAEHHANLVPWLMVAQ--Q-T-----------GA------- 135 (401)
T ss_pred HHHHHHHhhh---c--cCCCc------------CEEEECCcchHHHHHHHHHHHH--H-h-----------CC-------
Confidence 9988876511 0 00011 5788888887763211111100 0 0 00
Q ss_pred cccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
.+..++.+..+ ..| .+.+++.+. ++ ..+|++.-+ ++..
T Consensus 136 ----~v~~v~~~~~~---------------------~~d--------~~~l~~~i~-------~~-t~lv~i~~~-~n~t 173 (401)
T PRK10874 136 ----KVVKLPLGADR---------------------LPD--------VDLLPELIT-------PR-TRILALGQM-SNVT 173 (401)
T ss_pred ----EEEEEecCCCC---------------------cCC--------HHHHHHhcC-------cC-cEEEEEeCC-cccc
Confidence 01111111000 001 234555442 22 344545444 7888
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhh
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l 711 (863)
|.+.+ +++|.++|++||+++|+|++|. +|..- .... ...+|++++| |.+|- .-+|++.+++++.+.+
T Consensus 174 G~~~~----~~~i~~l~~~~g~~~ivD~a~~-~g~~~--~~~~--~~~~d~~~~s~~K~~gp--~G~G~l~~~~~~~~~~ 242 (401)
T PRK10874 174 GGCPD----LARAITLAHQAGMVVMVDGAQG-AVHFP--ADVQ--ALDIDFYAFSGHKLYGP--TGIGVLYGKSELLEAM 242 (401)
T ss_pred cCcCC----HHHHHHHHHHcCCEEEEECCcc-ccccc--CCch--hcCCCEEEEecccccCC--CccEEEEEchHHHhcC
Confidence 98876 8899999999999999999994 44331 1122 2347988776 95541 2258888999988766
Q ss_pred hcCCc-cce-------------eeccc-CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002941 712 VGDSK-LKA-------------LLHGH-SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (863)
Q Consensus 712 ~~~~~-~~~-------------~~~~~-T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~ 776 (863)
..-.. ... ....+ .-+.|..+.++..++++.+++.+. +++.+..+.+.+.+. +.++++|.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~-~~~~~~~~~l~~~l~----~~l~~~~g 317 (401)
T PRK10874 243 SPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDI-NQAESWSRSLATLAE----DALAKLPG 317 (401)
T ss_pred CCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHH----HHHhcCCC
Confidence 42100 000 00000 013355677788888887755432 334555555555443 33445554
Q ss_pred eeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------------CCEEEEecCCCCcHHHHHHH
Q 002941 777 VQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQL 842 (863)
Q Consensus 777 v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------------g~~lr~~ppl~~t~eeid~~ 842 (863)
+.-++ ..+.++.+.+.... ..++.+.|.++||.+++. .+.+|+++...+|++|+|.+
T Consensus 318 ~~~~~~~~~~i~~~~~~~~~---------~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~l 388 (401)
T PRK10874 318 FRSFRCQDSSLLAFDFAGVH---------HSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDAL 388 (401)
T ss_pred EEEeCCCCCcEEEEEECCcC---------HHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHH
Confidence 43332 23346666654321 356778889999999752 26799999888999999999
Q ss_pred HHHHHHHHHHH
Q 002941 843 LLKLYQRLEEF 853 (863)
Q Consensus 843 v~~L~~~l~~l 853 (863)
+++|+++++.+
T Consensus 389 l~al~~~~~~~ 399 (401)
T PRK10874 389 VNAVDRALELL 399 (401)
T ss_pred HHHHHHHHHHh
Confidence 99999987754
No 153
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.52 E-value=6.8e-12 Score=143.71 Aligned_cols=210 Identities=14% Similarity=0.116 Sum_probs=136.3
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCC
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGV 695 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~ 695 (863)
+++.+|++..+ ++..|.+.| +++|.++|++||+++++|++|+ +|.. .+..+.+| +|++++ -|.|.||
T Consensus 170 ~~t~lv~~~~v-~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~-~G~~--~id~~~~g--vD~~~~s~hK~l~g~- 238 (406)
T TIGR01814 170 DDIAVILLSGV-QYYTGQLFD----MAAITRAAHAKGALVGFDLAHA-VGNV--PLDLHDWG--VDFACWCTYKYLNAG- 238 (406)
T ss_pred CCeEEEEEecc-ccccceecC----HHHHHHHHHHcCCEEEEEcccc-cCCc--ccccccCC--CCEEEEcCccccCCC-
Confidence 46788999997 899999887 9999999999999999999994 6544 23333344 577655 5999877
Q ss_pred CCceeeeccHHHHHhhhcC-Ccc------ceeecccC----------CCccHHHHHHHHHHHHHhcChhhHHhHHHHHHH
Q 002941 696 IPLAATLATNAVFDSFVGD-SKL------KALLHGHS----------YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRI 758 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~-~~~------~~~~~~~T----------~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~ 758 (863)
|-+++..+++..+.+... ..+ ..+....+ .+.|..++++..++|+++++.+ .++++++...
T Consensus 239 -pG~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~ 316 (406)
T TIGR01814 239 -PGAGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAG-MEALRKKSLL 316 (406)
T ss_pred -CCeEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcC-HHHHHHHHHH
Confidence 335455544433322210 000 00000011 1245678888888999986544 3556666667
Q ss_pred HHHHHHHHHHHHHhcCCCe---e--EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEec-C
Q 002941 759 LRELWDLELIQQISSHRTV---Q--RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMC-G 831 (863)
Q Consensus 759 l~~~l~~~l~~~~~~~p~v---~--~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~p-p 831 (863)
+.+++.+.+.+.....+.+ . +.+.++.++.+.+. .. ...+.+.|.++||++...+ +.+|++| +
T Consensus 317 l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~~---------~~~~~~~L~~~gi~v~~~~~~~iRiS~~~ 386 (406)
T TIGR01814 317 LTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-VP---------GKAVFQALIKRGVIGDKREPSVIRVAPVP 386 (406)
T ss_pred HHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-CC---------HHHHHHHHHHCCEEEeccCCCeEEEechh
Confidence 7666655443321101222 1 12234556777665 22 4568888999999987654 7899998 6
Q ss_pred CCCcHHHHHHHHHHHHHHH
Q 002941 832 PCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 832 l~~t~eeid~~v~~L~~~l 850 (863)
..+|++|||+++++|++++
T Consensus 387 ~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 387 LYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred ccCCHHHHHHHHHHHHHHh
Confidence 8899999999999998765
No 154
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.51 E-value=7.5e-12 Score=141.25 Aligned_cols=324 Identities=10% Similarity=0.072 Sum_probs=189.0
Q ss_pred CcHHHHHHHHHHHHhcccccCCCC------CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcc
Q 002941 417 LQIELARDMGYTAARFGHVMFPEN------VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~------~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G 490 (863)
-.+.+.+|+.+.++........+. ..+...++.+.|+++++....+.+++++||++|+..+++.+.. ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~----~~- 85 (373)
T cd06453 11 KPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGR----AN- 85 (373)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhh----cC-
Confidence 457888888887765422110111 1233456778888888743125799999999999999977621 00
Q ss_pred ccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhh
Q 002941 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (863)
Q Consensus 491 ~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (863)
++ ..+||+...+|-+.. ....... . .. +. .+..++.....
T Consensus 86 ---~~----------g~~vl~~~~~~~~~~-~~~~~~~-~-~~-----------g~-----------~~~~v~~~~~~-- 125 (373)
T cd06453 86 ---KP----------GDEIVTSVMEHHSNI-VPWQQLA-E-RT-----------GA-----------KLKVVPVDDDG-- 125 (373)
T ss_pred ---CC----------CCEEEECcchhHHHH-HHHHHHH-h-hc-----------Cc-----------EEEEeecCCCC--
Confidence 00 146777665544321 1100000 0 00 00 01111111000
Q ss_pred hhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHH
Q 002941 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (863)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc 650 (863)
.-| .+.+++.+. +++.+|++.-+ .+..|...+ +++|.++|
T Consensus 126 -------------------~~d--------~~~l~~~l~--------~~~~~v~~~~~-~~~tG~~~~----~~~i~~~~ 165 (373)
T cd06453 126 -------------------QLD--------LEALEKLLT--------ERTKLVAVTHV-SNVLGTINP----VKEIGEIA 165 (373)
T ss_pred -------------------CcC--------HHHHHHHhc--------CCceEEEEeCc-ccccCCcCC----HHHHHHHH
Confidence 001 244555553 24556666554 677888776 78999999
Q ss_pred HHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCc----ccee-ecc
Q 002941 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSK----LKAL-LHG 723 (863)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~----~~~~-~~~ 723 (863)
++||++|++|++++ +|... +... ...+|+++++ |.+++ ..+|++++++++.+.+..... .... ...
T Consensus 166 ~~~~~~li~D~a~~-~~~~~--~~~~--~~~~d~~~~s~~K~~~~--~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 238 (373)
T cd06453 166 HEAGVPVLVDGAQS-AGHMP--VDVQ--DLGCDFLAFSGHKMLGP--TGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEE 238 (373)
T ss_pred HHcCCEEEEEhhhh-cCcee--eecc--ccCCCEEEeccccccCC--CCcEEEEEchHHhhcCCCeecCCCccccccccc
Confidence 99999999999985 44331 1122 2357999988 99875 457889999998887653110 0000 000
Q ss_pred ----------cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe---cccceEEEEE
Q 002941 724 ----------HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV---VALGTLCAIE 790 (863)
Q Consensus 724 ----------~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v---rg~Gl~~~ie 790 (863)
...+.+..+..+..++++.+++.++ +.+.+...++.+++. +.+.+++.+.-+ ...+.++.+.
T Consensus 239 ~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~-~~~~~~~~~~~~~l~----~~l~~~~~~~~~~~~~~~~~~~~~~ 313 (373)
T cd06453 239 TTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGM-EAIAAHEHELTAYAL----ERLSEIPGVRVYGDAEDRAGVVSFN 313 (373)
T ss_pred cccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHH----HHHhcCCCeEEeCCccccCCeEEEE
Confidence 0112344556666777887765543 444555555555443 334445533322 3356677777
Q ss_pred EccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------------CCEEEEecCCCCcHHHHHHHHHHH
Q 002941 791 LQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 791 l~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------------g~~lr~~ppl~~t~eeid~~v~~L 846 (863)
+.... ..++.+.|.++||.+++. .+.+|+++...+|++|+|+++++|
T Consensus 314 ~~~~~---------~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 314 LEGIH---------PHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred ECCcC---------HHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 64322 457888999999988642 368999999999999999998864
No 155
>PRK09105 putative aminotransferase; Provisional
Probab=99.51 E-value=7.3e-12 Score=141.77 Aligned_cols=317 Identities=14% Similarity=0.078 Sum_probs=195.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.++++..+ .+.++ -+|.+.+|+.+.+..... |..+...+|.+.+++..+-. .+.|++++++++++..++.
T Consensus 44 ~~i~l~~~--~~~~~--~~~~~~~a~~~~~~~~~~-----Y~~~~~~~Lr~aia~~~~v~-~e~I~it~Gs~~ai~~~~~ 113 (370)
T PRK09105 44 GAVFLNAN--ECPLG--PSPAARDAAARSAALSGR-----YDLELEDDLRTLFAAQEGLP-ADHVMAYAGSSEPLNYAVL 113 (370)
T ss_pred CcEEecCC--CCCCC--CCHHHHHHHHHHHHHhcC-----CCCchHHHHHHHHHHHhCcC-hhhEEEcCChHHHHHHHHH
Confidence 56665543 23455 479999999887755332 22233667888888877643 4789999999999998887
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.... .| .+|+..+-+|.+....+...+.
T Consensus 114 ~l~~---------~g------------d~Vli~~P~y~~~~~~~~~~g~------------------------------- 141 (370)
T PRK09105 114 AFTS---------PT------------AGLVTADPTYEAGWRAADAQGA------------------------------- 141 (370)
T ss_pred HHcC---------CC------------CEEEEeCCChHHHHHHHHHcCC-------------------------------
Confidence 5521 12 5688888887665332221110
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..+.+|... .+ ..| .+.+++. .++....+++.| ++..|.+. +
T Consensus 142 ~~~~v~~~~-----------------~~--~~d--------~~~l~~~--------~~~~~~v~l~nP--~NPTG~~~-~ 183 (370)
T PRK09105 142 PVAKVPLRA-----------------DG--AHD--------VKAMLAA--------DPNAGLIYICNP--NNPTGTVT-P 183 (370)
T ss_pred eEEEecCCC-----------------CC--CCC--------HHHHHhc--------CCCCCEEEEeCC--CCCCCcCc-C
Confidence 001111000 00 001 1222221 122345677888 78899765 6
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcCC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDS 715 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~~ 715 (863)
.+.++++.+.|+ +|+++|+||++..|+.. ....+..+..++++ +|||.+| .| +.+|++++++++++.+...
T Consensus 184 ~~~l~~l~~~~~-~~~~lIvDEaY~~f~~~--~s~~~~~~~~~~vi~~~SfSK~~g~~G-lRiG~~v~~~~~i~~l~~~- 258 (370)
T PRK09105 184 RADIEWLLANKP-AGSVLLVDEAYIHFSDA--PSVVDLVAQRKDLIVLRTFSKLYGMAG-MRLGLAAARPDLLAKLARF- 258 (370)
T ss_pred HHHHHHHHHhCC-CCcEEEEECchHHhccC--cchHHHHhhCCCEEEEecccHhhcCCc-cceeeeecCHHHHHHHHhc-
Confidence 666777777764 59999999999777431 11122223345655 5799997 67 8999999999999887641
Q ss_pred ccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC
Q 002941 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795 (863)
Q Consensus 716 ~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~ 795 (863)
..+..+..++.++.++|+ ++++.+..++..++.++.+.+. +.+++ +.-....|.++.+.+..+
T Consensus 259 --------~~~~~~~~~~~aa~~~L~---~~~~~~~~~~~~~~~r~~l~~~----L~~~g-~~~~~~~~~f~~~~~~~~- 321 (370)
T PRK09105 259 --------GHNPLPVPAAAAGLASLR---DPKLVPQRRAENAAVREDTIAW----LKKKG-YKCTPSQANCFMVDVKRP- 321 (370)
T ss_pred --------CCCCcCHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHH----HHHCC-CCcCCCCCcEEEEeCCCC-
Confidence 233456666666666664 4566666666666666655444 33333 222345666666655321
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEe----cCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRP----LGNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p----~g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
..++++.|.++||+++. ..+.+|++ ..+++++++++++|++.+
T Consensus 322 ---------~~~l~~~L~~~gI~v~~~~~~~~~~~Ris---~~~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 322 ---------AKAVADAMAKQGVFIGRSWPIWPNWVRVT---VGSEEEMAAFRSAFAKVM 368 (370)
T ss_pred ---------HHHHHHHHHHCCcEEecCCCCCCCeEEEE---cCCHHHHHHHHHHHHHHh
Confidence 46788999999999952 13688887 346888999988887654
No 156
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=99.51 E-value=1e-11 Score=139.67 Aligned_cols=321 Identities=13% Similarity=0.089 Sum_probs=190.9
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
..+|+.. +.+.+|- .|.+.+|+.+.+..... ++.....+|.+.++++++-. .+.+++++++++++..+++
T Consensus 21 ~~i~l~~--~~~~~~~--p~~~~~a~~~~~~~~~~-----y~~~~~~~lr~~ia~~~~~~-~~~i~it~Ga~~~l~~~~~ 90 (356)
T PRK08056 21 QLLDFSA--NINPLGM--PVSLKRAIIDNLDCAER-----YPDVEYRHLHQALARHHQVP-ASWILAGNGETESIFAVVS 90 (356)
T ss_pred hEEEecc--ccCCCCC--CHHHHHHHHHHHHhccc-----CcCccHHHHHHHHHHHhCcC-hhhEEECCCHHHHHHHHHH
Confidence 6778775 3456774 68999999887765432 22223567777777777543 3689999988898887776
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.. . . .+++....+|......+... | .
T Consensus 91 ~l-~---------~-------------g~viv~~P~y~~~~~~~~~~-g------------------------------~ 116 (356)
T PRK08056 91 GL-K---------P-------------RRAMIVTPGFAEYRRALQQV-G------------------------------C 116 (356)
T ss_pred Hh-C---------C-------------CCEEEeCCCcHHHHHHHHHc-C------------------------------C
Confidence 43 1 1 13566666664432211111 0 0
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..+++|... .++ .... ..+.+.+. +..-+.++..| ++..|. +.+
T Consensus 117 ~~~~v~~~~---------------------~~~-~~~~----~~~~~~~~-------~~~k~v~l~~p--~NPTG~-~~~ 160 (356)
T PRK08056 117 EIRRYSLRE---------------------ADG-WQLT----DAILEALT-------PDLDCLFLCTP--NNPTGL-LPE 160 (356)
T ss_pred eEEEEeccc---------------------ccC-CCcc----HHHHHhcc-------CCCCEEEEeCC--cCCCCC-CCC
Confidence 111111000 000 0000 11112221 22224455677 788997 568
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcE-E--EeccccC-CCCCCceeeec-cHHHHHhhhcC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDI-A--CYGKLLT-GGVIPLAATLA-TNAVFDSFVGD 714 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDi-v--t~sKgLg-gG~~Pigav~~-~~~i~~~l~~~ 714 (863)
.+.+++|.++|++||+++|+||++.+|-..+..+.. .+.-.+.+ + +|||.++ .| +.+|++++ ++++++.+...
T Consensus 161 ~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~~~~~~l~~~ 238 (356)
T PRK08056 161 RQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIP-QLADNPHLWVLRSLTKFYAIPG-LRLGYLVNSDDAAVARMRRQ 238 (356)
T ss_pred HHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHH-HhccCCCEEEEEechhhccCcc-hhheeeecCCHHHHHHHHHh
Confidence 899999999999999999999999887433321111 11112333 3 6799998 78 89999998 46777766531
Q ss_pred CccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccC
Q 002941 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (863)
Q Consensus 715 ~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~ 794 (863)
...++.+.++.+++.+.|+ ++.+..+.++..+..++.+ .+.+.+.+.+......|.++.+.+..+
T Consensus 239 --------~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l----~~~L~~~~~~~~~~~~~~~~~~~~~~~ 303 (356)
T PRK08056 239 --------QMPWSINAFAALAGEVILQ---DRAYQQATWQWLAEEGARF----YQALCALPLLTVWPGRANYLFLRCERP 303 (356)
T ss_pred --------CCCCchhHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHH----HHHHhcCCCcEEcCCCCcEEEEEcCCC
Confidence 1234556666666666553 4555544444444444433 334445544333344567766665422
Q ss_pred CcCCCCchHHHHHHHHHHHHCCcEEEecC-------CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKLREDGVYMRPLG-------NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-------~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
..++++.|.++||.+++.. +.+|++ ..++++.+.++++|++.+
T Consensus 304 ----------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis---~~~~~~~~~l~~~l~~~~ 353 (356)
T PRK08056 304 ----------DIDLQRALLTQRILIRSCANYPGLDSRYYRVA---IRSAAENERLLAALRNVL 353 (356)
T ss_pred ----------hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---EcCHHHHHHHHHHHHHHH
Confidence 3468889999999998632 578887 457888899998887764
No 157
>PLN00175 aminotransferase family protein; Provisional
Probab=99.51 E-value=1e-11 Score=142.69 Aligned_cols=208 Identities=13% Similarity=0.161 Sum_probs=133.0
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchh-hhcCCCCcEE---EeccccC-CC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCVPDIA---CYGKLLT-GG 694 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~-e~~gv~PDiv---t~sKgLg-gG 694 (863)
+.+|++... ++..|.+ .+.+.+++|.++|++||+++|+||++..|-..+..... +..+..+.++ +|||.++ .|
T Consensus 188 ~k~i~i~~p-~NPtG~~-~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G 265 (413)
T PLN00175 188 TRAILINTP-HNPTGKM-FTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTG 265 (413)
T ss_pred ceEEEecCC-CCCCCcC-CCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcc
Confidence 344555443 7888865 47889999999999999999999999877433322111 2222223333 6799998 78
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+++|++++++++++.+... ....+++.+++...++.++|+. .+.+.+++++..+..++.+.+ .+.++
T Consensus 266 -~RiG~~v~~~~l~~~l~~~------~~~~~~~~s~~~Q~a~~~~l~~--~~~~~~~~~~~~~~~~~~l~~----~L~~~ 332 (413)
T PLN00175 266 -WKIGWAIAPPHLTWGVRQA------HSFLTFATATPMQWAAVAALRA--PESYYEELKRDYSAKKDILVE----GLKEV 332 (413)
T ss_pred -hheeeeEeCHHHHHHHHHH------HhhccCCCCHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHH----HHHHC
Confidence 8999999999999887641 1223567788888888777753 233444445444444444433 33334
Q ss_pred CCeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec----------CCEEEEecCCCCcHHHHHHH
Q 002941 775 RTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL----------GNVIYLMCGPCSSPEVCSQL 842 (863)
Q Consensus 775 p~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~----------g~~lr~~ppl~~t~eeid~~ 842 (863)
+ +......| .++.+.+...+ .. ...+++..|+ ++||.+.|. .+.+|+.. +.++++++++
T Consensus 333 g-~~~~~p~g~~f~~~~~~~~~----~~--~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~--~~~~e~l~~~ 403 (413)
T PLN00175 333 G-FKVYPSSGTYFVMVDHTPFG----FE--NDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAF--CKDEETLRAA 403 (413)
T ss_pred C-CeecCCCeeEEEEEeccccC----CC--CHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEE--cCCHHHHHHH
Confidence 3 22233444 45556553211 00 1456778776 569999863 14788864 4588999999
Q ss_pred HHHHHHHHH
Q 002941 843 LLKLYQRLE 851 (863)
Q Consensus 843 v~~L~~~l~ 851 (863)
+++|.+.++
T Consensus 404 ~~rL~~~~~ 412 (413)
T PLN00175 404 VERMKTKLK 412 (413)
T ss_pred HHHHHHHHh
Confidence 999988764
No 158
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=99.51 E-value=6.6e-14 Score=154.80 Aligned_cols=193 Identities=21% Similarity=0.228 Sum_probs=129.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccc--cCCCCCCchhHHHhhccccccccCCCccccccc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ--TGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSN 114 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (863)
|++|||.+|++++|||.|++||+++|. ++|.+|+|||||. +|+..++....+......
T Consensus 2 ~~~l~l~p~~~~~G~tsi~lgLl~~l~-----~k~~kva~~kPI~~~~~~~~~~~~e~~~~~~~~--------------- 61 (354)
T COG0857 2 SRTLLLIPTETGVGKTSISLGLLRALE-----QKGLKVAYFKPIGTRTGKDADDLTEEDIRATSS--------------- 61 (354)
T ss_pred cceEEEeccCCCccHHHHHHHHHHHHH-----HcCceeEEEeccccccCCccchhHHHHHHHhhh---------------
Confidence 678999999999999999999999999 9999999999997 555444333322222100
Q ss_pred hhhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCCh
Q 002941 115 SILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGD 194 (863)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~ 194 (863)
.+.+. .+..+..+..-.... ..+..+
T Consensus 62 -----------------~l~~~---------------------------------~~~~~~~ae~L~~~~----~~d~l~ 87 (354)
T COG0857 62 -----------------SLTYA---------------------------------EPLVLSFAEVLLSTG----QDDVLL 87 (354)
T ss_pred -----------------hcccC---------------------------------cccchhhHHHHhccc----cchHHH
Confidence 00010 011111111111111 123456
Q ss_pred hHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCC----CCCcHhHHhhhcCCCEEEEECCCCCcHHHHH--
Q 002941 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGP----SGSLQCDLYRPFRLPGILVGDGRLGGISGTI-- 268 (863)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~----~~~~~~dla~~l~~pvilV~~~~~g~i~~~~-- 268 (863)
+++.+.|.++.+.+ |++++|| ..|.- ....|..||+.|+++++||++..+-+..+..
T Consensus 88 e~i~~~y~e~~~~~-------------~~vv~~g----~~~~~~~~~~~~ln~~iA~~Lna~~vlva~~~~~~~~~~~~~ 150 (354)
T COG0857 88 EEILANYAELAKDA-------------DVVVVEG----DVPTREGPYALDLNYEIAKNLNAAAVLVARALLVTPYELKSR 150 (354)
T ss_pred HHHHHHHHHHhccC-------------ceEEecc----ceeccccCccccccHHHHhhcCcchhhccccccCChhhhhhH
Confidence 78888888876654 9999999 55532 5678999999999999999998877654444
Q ss_pred --HHHHHHHhCCCcEEEEEEcCCCCC----CHHHHHHhhcC-CCCeee-cCCCCCCCchh
Q 002941 269 --SAYESLKLRGYDVVAVVFEDHGLV----NEVPLMSYLRN-RVPVLV-LPPLPQDSSND 320 (863)
Q Consensus 269 --~~~~~~~~~~~~v~gvi~n~~~~~----~~~~~~~~~~~-~~pvl~-~p~~~~~~~~~ 320 (863)
....++...+.++.|||+|+...+ ....+.+++++ ++.+++ +|..+-+.+..
T Consensus 151 i~~~~~~~~~~~~~l~gVv~N~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ll~~~~ 210 (354)
T COG0857 151 VELALAAFGAAGNNLAGVVINNAPVDEAGRTEDLLAEFLESSGIAVVGVLPPNRLLRSSP 210 (354)
T ss_pred HHHHHHHhcccCCceEEEEecCCChhhhhhhhhHHHHHhhhccccccccCCHHHHhcCCc
Confidence 444555545568999999966322 34456666655 688888 88877776543
No 159
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=99.51 E-value=4e-12 Score=141.56 Aligned_cols=191 Identities=15% Similarity=0.161 Sum_probs=131.2
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~ 696 (863)
+.+++.| ++..|. +++.+.+++|.++|++||+++|+||++.+|....... ...+..++++ +|||.+| .| +
T Consensus 128 ~v~i~~p--~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~--~~~~~~~~~i~~~S~SK~~g~~G-~ 201 (330)
T TIGR01140 128 VLVLCNP--NNPTGR-LIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLA--PQAARFPGLVVLRSLTKFFGLAG-L 201 (330)
T ss_pred EEEEeCC--CCCCCC-CCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchh--hHhccCCCEEEEEecchhhcCch-h
Confidence 5667778 678885 4588899999999999999999999998774321111 1122223444 7899998 77 8
Q ss_pred CceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002941 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~ 776 (863)
++|++++++++++.+... ..++..++++++++.+.|+ ++++.++++++.+..++.+ .+.+++++.
T Consensus 202 R~G~i~~~~~~~~~l~~~--------~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~l----~~~L~~~~~ 266 (330)
T TIGR01140 202 RLGFVVAHPALLARLREA--------LGPWTVNGPARAAGRAALA---DTAWQAATRARLAAERARL----AALLARLGG 266 (330)
T ss_pred hhhheeCCHHHHHHHHhc--------CCCCCchHHHHHHHHHHHh---chHHHHHHHHHHHHHHHHH----HHHHHhCCC
Confidence 999999999999988742 2345667777777766665 5566666666666666544 344556664
Q ss_pred eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-------CEEEEecCCCCcHHHHHHHHHHH
Q 002941 777 VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-------NVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 777 v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-------~~lr~~ppl~~t~eeid~~v~~L 846 (863)
+....+.|.++.+.+.. ..++++.|.++||++.|.. +.+|+.. ....++ +.++++|
T Consensus 267 ~~~~~~~~~f~~~~~~~-----------~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~--~~~~~~-~~~~~~l 329 (330)
T TIGR01140 267 LEVVGGTALFLLVRTPD-----------AAALHEALARRGILIRDFDNFPGLDPRYLRFAL--PTDEEN-DRLEEAL 329 (330)
T ss_pred ceECCCCCeEEEEEcCC-----------HHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEe--cCHHHH-HHHHHhh
Confidence 44345567777776542 3578899999999998741 5788863 333344 6666655
No 160
>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.4e-12 Score=141.33 Aligned_cols=357 Identities=12% Similarity=0.057 Sum_probs=216.5
Q ss_pred CCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCC-CCcHHHHHHHHHHHHhccccc----CCCCCChHHH
Q 002941 372 PEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDA-TLQIELARDMGYTAARFGHVM----FPENVYEPAL 446 (863)
Q Consensus 372 ~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh-~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~ 446 (863)
+..-+.++++.+-...|-|--.|.+. +.|.+.| =|++|. +++-...+++.+.++++++.. .-.+.++.+.
T Consensus 111 PG~~v~l~dR~S~D~n~tfk~tG~~~--~~lNlgS---YNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hk 185 (519)
T KOG1357|consen 111 PGAWVDLMDRVSDDYNWTFKYTGTRS--RCLNLGS---YNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHK 185 (519)
T ss_pred CCceEEeeeeeccCCCceEEecccee--eeeeecc---cccccccccCCcCChHHHHHHHHhcccccccchhcccHHHHH
Confidence 44445566665555555565555521 2333322 234443 144455666677777877653 1125678899
Q ss_pred HHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcccccee
Q 002941 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA 526 (863)
Q Consensus 447 eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~ 526 (863)
++++..+++++.+ ..+.+..|..+|..-+-..+ + +...|..+.-.|++......+
T Consensus 186 elE~l~A~f~g~e---~a~vF~mGf~TNs~~~p~l~-----------~-----------~gsLIiSDelNHaSi~~GaRL 240 (519)
T KOG1357|consen 186 ELEELVARFLGVE---DAIVFSMGFATNSMNIPSLL-----------G-----------KGSLIISDELNHASLITGARL 240 (519)
T ss_pred HHHHHHHHhcCCc---ceEEEeccccccccCcceee-----------c-----------CCcceeeccccchheeccccc
Confidence 9999999999863 45545567776665544331 2 134666777789988777766
Q ss_pred cCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHH
Q 002941 527 QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606 (863)
Q Consensus 527 t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~ 606 (863)
+|.... . |+| || ...||+
T Consensus 241 SgAtiR--V--------------------------------fkH--------------------Nd--------m~~LEr 258 (519)
T KOG1357|consen 241 SGATTR--V--------------------------------FRH--------------------ND--------MQGLER 258 (519)
T ss_pred cCceEE--E--------------------------------Eec--------------------CC--------HHHHHH
Confidence 652210 0 000 22 123444
Q ss_pred HHhcCC----CCC-CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc--cccccCCcchhhhcC
Q 002941 607 NLLQNP----GLK-VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT--GFWRLGVETTADLLG 679 (863)
Q Consensus 607 ~l~~~i----~~~-~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T--GfGRtG~~~a~e~~g 679 (863)
.|.+.| -+. .+.+...||+|.+ .++.|.++- |+++.++|+||.+.|++||+|+ ..|++| .+.++++|
T Consensus 259 ~Lrd~I~~gqP~Thrp~kki~iivegi-ysmEg~iv~----Lp~vvalkkkykayl~lDEAHSiGA~g~tG-rgvce~~g 332 (519)
T KOG1357|consen 259 LLRDAIVYGQPKTHRPWKKILICVEGI-YSMEGTIVD----LPEVVALKKKYKAYLYLDEAHSIGAMGATG-RGVCEYFG 332 (519)
T ss_pred HHHHHHhcCCCCcCCcchheeeeeccc-eeccCeecc----cHHHHHhhccccEEEEeeccccccccCCCC-cceeeccC
Confidence 454432 122 2557788999997 999999998 7788899999999999999997 223444 45788888
Q ss_pred CCC---cEE--EeccccC--CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChh-----
Q 002941 680 CVP---DIA--CYGKLLT--GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ----- 747 (863)
Q Consensus 680 v~P---Div--t~sKgLg--gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~----- 747 (863)
+.| ||+ ||-|+.+ ||| +.+++++.+.+...+. .+-+....+|..+...+.+++++..++
T Consensus 333 ~d~~dvDImMGtftKSfga~GGy-----iagsk~lid~lrt~s~----~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g 403 (519)
T KOG1357|consen 333 VDPEDVDIMMGTFTKSFGAAGGY-----IAGSKELIDYLRTPSP----SALYATSLSPPVAQQILTSVKHIMGEDGTNRG 403 (519)
T ss_pred CCchhheeecceehhhcccccce-----ecCcHHHHhhhccCCC----ceeecccCChHHHHHHHHHHHhhcCCCcccHH
Confidence 865 554 8889775 565 8999999999876431 233334467888888889999886422
Q ss_pred --hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--
Q 002941 748 --TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-- 823 (863)
Q Consensus 748 --l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-- 823 (863)
-.+++.++..+++..++ +...+..=......+.+-+- .......+.+.|+++++-+...|
T Consensus 404 ~~k~~~l~~ns~yfr~~l~--------~~gfivyG~~dSpVvplll~--------~~~k~~~f~r~~l~~nigvVvvgfP 467 (519)
T KOG1357|consen 404 RQKIERLAENSRYFRWELQ--------KMGFIVYGNNDSPVVPLLLY--------GPAKIVAFSREMLERNIGVVVVGFP 467 (519)
T ss_pred HHHHHHHHhhhHHHHHhhh--------cCcEEEecCCCCCcceeeec--------CcccccHHHHHHHhcCceEEEEeCC
Confidence 23444444444443221 11111000000011111111 11235567888988876554222
Q ss_pred ------CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 824 ------NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 824 ------~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.+.||..+..++.|++|++++.+++.=+
T Consensus 468 atpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g~ 501 (519)
T KOG1357|consen 468 ATPLLESRARFCLSASHTKEDLDRALEVIDRVGD 501 (519)
T ss_pred CchHHHhHHHhhhcccccHHHHHHHHHHHhhhch
Confidence 4667887888999999999988876543
No 161
>PRK09148 aminotransferase; Validated
Probab=99.50 E-value=1.3e-11 Score=141.37 Aligned_cols=215 Identities=12% Similarity=0.062 Sum_probs=139.4
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch-hhhcCCCCc----EEEeccccC
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPD----IACYGKLLT 692 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a-~e~~gv~PD----ivt~sKgLg 692 (863)
+....+++.| ++..|... +.+.+++|.++|++||+++|+||++..|...+..+. ...+.-.+| +-+|||.++
T Consensus 165 ~~~~v~l~~P--~NPtG~~~-s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~ 241 (405)
T PRK09148 165 KPIALIVNYP--SNPTAYVA-DLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFS 241 (405)
T ss_pred cceEEEEeCC--CCCCCcCC-CHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccC
Confidence 3456666778 78888555 788899999999999999999999987632232211 111211133 237899998
Q ss_pred -CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHH
Q 002941 693 -GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQI 771 (863)
Q Consensus 693 -gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~ 771 (863)
-| +.+|++++++++++.+..- ....+++.++++..++.+.|+- .+++.+++++..+..++.+.+. +
T Consensus 242 ~pG-lR~G~~v~~~~~i~~l~~~------~~~~~~~~~~~~q~~~~~~L~~--~~~~~~~~~~~~~~~r~~l~~~----L 308 (405)
T PRK09148 242 MAG-WRMGFAVGNERLIAALTRV------KSYLDYGAFTPIQVAATAALNG--PQDCIAEMRELYKKRRDVLVES----F 308 (405)
T ss_pred Ccc-hheeeeeCCHHHHHHHHHH------HHHhccCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHH----H
Confidence 78 8999999999999988641 1223455567777777776652 2344555555555555544333 3
Q ss_pred hcCCCeeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHH
Q 002941 772 SSHRTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQL 842 (863)
Q Consensus 772 ~~~p~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~ 842 (863)
.+++. ... ..-|+++.+++.... . .....+++..|+ ++||.+.|+ .+.+|+.. ..+++.+.++
T Consensus 309 ~~~~~-~~~~p~~g~f~~~~l~~~~-~----~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~--~~~~~~l~~a 380 (405)
T PRK09148 309 GRAGW-DIPPPAASMFAWAPIPEAF-R----HLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIAL--VENEQRIRQA 380 (405)
T ss_pred HHcCC-ccCCCCeeEEEEEECCCcc-C----CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEe--cCCHHHHHHH
Confidence 33332 222 234667777775321 0 001356777766 689999874 25788864 3678999999
Q ss_pred HHHHHHHHHHHHHH
Q 002941 843 LLKLYQRLEEFDKV 856 (863)
Q Consensus 843 v~~L~~~l~~l~~~ 856 (863)
+++|.+++....+-
T Consensus 381 l~~l~~~l~~~~~~ 394 (405)
T PRK09148 381 ARNIKRFLSSADET 394 (405)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877654
No 162
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=99.50 E-value=2.2e-11 Score=136.95 Aligned_cols=321 Identities=15% Similarity=0.165 Sum_probs=198.7
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.++|+..+ .+.+|. .|.+.+++.+.+..+.. ++.+...+|-++++++.+-. .+.++++++++++...+++
T Consensus 20 ~~~~l~~~--~~~~~~--p~~~~~a~~~~~~~~~~-----Y~~~~~~~lr~~ia~~~~~~-~~~i~it~Ga~~~l~~~~~ 89 (354)
T PRK06358 20 MILDFSAN--INPLGV--PESLKQAITENLDKLVE-----YPDPDYLELRKRIASFEQLD-LENVILGNGATELIFNIVK 89 (354)
T ss_pred ceEEecCC--CCCCCC--CHHHHHHHHHHHHhhhc-----CCCccHHHHHHHHHHHhCCC-hhhEEECCCHHHHHHHHHH
Confidence 46887653 345564 68999999987765432 22223456777888776543 4689999999999988776
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.. . + .+|+...-+|+.....+...+.
T Consensus 90 ~~-~----------~------------~~v~i~~P~y~~~~~~~~~~g~------------------------------- 115 (354)
T PRK06358 90 VT-K----------P------------KKVLILAPTFAEYERALKAFDA------------------------------- 115 (354)
T ss_pred Hh-C----------C------------CcEEEecCChHHHHHHHHHcCC-------------------------------
Confidence 43 1 1 3588888888766433221110
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..+.+|... ...|. -| ..+.+.+. .+.-+.+++.| ++..|.. .+
T Consensus 116 ~~~~~~~~~---------------~~~~~--~d---------~~~~~~~~-------~~~~~v~~~~P--~NPtG~~-~~ 159 (354)
T PRK06358 116 EIEYAELTE---------------ETNFA--AN---------EIVLEEIK-------EEIDLVFLCNP--NNPTGQL-IS 159 (354)
T ss_pred eeEEEeCcc---------------ccCCC--cc---------HHHHHhhc-------cCCCEEEEeCC--CCCCCCc-cC
Confidence 001111000 00000 00 01111221 12233467889 7888865 47
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCCCCcEE---EeccccC-CCCCCceeeec-cHHHHHhhhc
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLLT-GGVIPLAATLA-TNAVFDSFVG 713 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~-~~~i~~~l~~ 713 (863)
.+-+++|.++|++||+++|+||++..|-..+.. -.....+-.+.++ +|||.++ .| +++|++++ ++.+++.+..
T Consensus 160 ~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G-~RiG~lv~~~~~~~~~~~~ 238 (354)
T PRK06358 160 KEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPG-LRLGYGLTSNKNLAEKLLQ 238 (354)
T ss_pred HHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcc-hhheeeecCCHHHHHHHHH
Confidence 888999999999999999999999877433321 1112222234444 6799998 88 89999987 4778777764
Q ss_pred CCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEcc
Q 002941 714 DSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQA 793 (863)
Q Consensus 714 ~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~ 793 (863)
- ...+..+.++..++.++|+ ++++.++..+..+..++. +.+.+.+++.+.-....|.++.+.+.+
T Consensus 239 ~--------~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~----l~~~L~~~~~~~~~~~~g~f~~~~~~~ 303 (354)
T PRK06358 239 M--------REPWSINTFADLAGQTLLD---DKEYIKKTIQWIKEEKDF----LYNGLSEFKGIKVYKPSVNFIFFKLEK 303 (354)
T ss_pred h--------CCCCcchHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHH----HHHHHhcCCCcEEcCCcceEEEEEcCc
Confidence 1 1245567777777777664 444444444443444443 344455555444345667777776642
Q ss_pred CCcCCCCchHHHHHHHHHHHHCCcEEEec----C---CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 794 AGCNAGYGSLYAASLLKKLREDGVYMRPL----G---NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 794 ~~~~~~~~~~~~~~l~~~l~e~GV~~~p~----g---~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
..++++.|.++||.+++. + +.+|+. ..++++.++++++|++.+
T Consensus 304 -----------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls---~~~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 304 -----------PIDLRKELLKKGILIRSCSNYRGLDENYYRVA---VKSREDNKKLLKALEVIL 353 (354)
T ss_pred -----------hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---eCCHHHHHHHHHHHHHHh
Confidence 246888999999999974 1 468886 678899999999998765
No 163
>PRK03321 putative aminotransferase; Provisional
Probab=99.49 E-value=7.5e-12 Score=140.37 Aligned_cols=195 Identities=15% Similarity=0.180 Sum_probs=131.1
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHH--cCCeEEEecccccccccCCc-chhhhcCCCCcEE---EeccccC-C
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLLT-G 693 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~--~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv---t~sKgLg-g 693 (863)
+.++..| ++..|.+.+ .+++.++|++ +|+++|+||++..|...+.. .....+...++++ +|||.++ .
T Consensus 148 ~v~l~~p--~NPtG~~~~----~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 221 (352)
T PRK03321 148 LIFVCNP--NNPTGTVVT----PAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLA 221 (352)
T ss_pred EEEEeCC--CCCcCCCcC----HHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhH
Confidence 4445555 788998775 3455555555 69999999999877544432 2233333346666 5799998 6
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +++|++++++++++.+... ..+++.++++++++.++|+. .+.+.+++.+..+ .++.+ .+.+.+
T Consensus 222 G-lRiG~~v~~~~~~~~~~~~--------~~~~~~s~~~q~~a~~~l~~--~~~~~~~~~~~~~-~r~~~----~~~L~~ 285 (352)
T PRK03321 222 G-LRVGYAVGHPEVIAALRKV--------AVPFSVNSLAQAAAIASLAA--EDELLERVDAVVA-ERDRV----RAALRA 285 (352)
T ss_pred H-HhhhhhcCCHHHHHHHHHh--------cCCCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHH-HHHHH----HHHHHH
Confidence 7 8999999999999988741 24567788999888888862 2333343333322 22223 333443
Q ss_pred CCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 774 HRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 774 ~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.+. ......|.++.+.+... ...+.+.|.++||++.+.+ +.+|+. ..+++++++++++|++++.
T Consensus 286 ~~~-~~~~~~g~~i~i~l~~~----------~~~~~~~l~~~gI~v~~~~~~~iRi~---~~~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 286 AGW-TVPPSQANFVWLPLGER----------TADFAAAAAEAGVVVRPFAGEGVRVT---IGAPEENDAFLRAARAWRA 350 (352)
T ss_pred CCC-ccCCCCCCEEEEeCCCC----------HHHHHHHHHHCCEEEEccCCCcEEEe---eCCHHHHHHHHHHHHHHhc
Confidence 332 22334588888876421 4578889999999999875 578987 5789999999999988754
No 164
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=99.49 E-value=1.6e-11 Score=138.18 Aligned_cols=317 Identities=14% Similarity=0.177 Sum_probs=194.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
+++|+..+ .+.++ -.|.+.+++.+.+..... |+..-..+|.+.++++.+-. .+.+++++++++|+..+++
T Consensus 31 ~~i~l~~~--~~~~~--~~~~~~~~~~~~~~~~~~-----Y~~~~~~~lr~~ia~~~~~~-~~~I~it~G~~~al~~~~~ 100 (357)
T PRK14809 31 DLVKLSSN--ENPHG--PSPAAVEAIREAAERVHS-----YPKASHADLTAALADRWDVS-PEQVWLANGGDGALDYLAR 100 (357)
T ss_pred ceeEecCC--CCCCC--CCHHHHHHHHHHHhhhhc-----CCCCCHHHHHHHHHHHhCCC-cceEEECCCHHHHHHHHHH
Confidence 67777753 23455 468899998887764321 22222456777777776543 4689999999999988887
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
...+ .| ..|+..+-+|......+... +. ++
T Consensus 101 ~~~~---------~g------------d~V~v~~P~y~~~~~~~~~~-g~----------------------------~~ 130 (357)
T PRK14809 101 AMLD---------PG------------DTVLVPDPGFAYYGMSARYH-HG----------------------------EV 130 (357)
T ss_pred HhcC---------CC------------CEEEEeCCChHHHHHHHHHc-CC----------------------------eE
Confidence 6521 12 46888888775332211110 00 01
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..++.+.. +.+. .+ .+.+++.. .+.-+.+++.| ++..|... +
T Consensus 131 ~~~~l~~~-----------------~~~~--~~--------~~~~~~~~--------~~~k~i~l~~p--~NPTG~~~-s 172 (357)
T PRK14809 131 REYPVSKA-----------------DDFE--QT--------ADTVLDAY--------DGERIVYLTSP--HNPTGSEI-P 172 (357)
T ss_pred EEEecccC-----------------cCCC--cC--------HHHHHHhh--------cCCcEEEEeCC--CCCCCcCC-C
Confidence 11111100 0000 01 11222222 11234556666 89999766 5
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcE---EEeccccC-CCCCCceeeeccHHHHHhhhcCC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDI---ACYGKLLT-GGVIPLAATLATNAVFDSFVGDS 715 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDi---vt~sKgLg-gG~~Pigav~~~~~i~~~l~~~~ 715 (863)
.+-+.+|.++|++ ++++|.||++..|...+.... .....+.+ -+|||.++ .| +.+|++++++++++.+...
T Consensus 173 ~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~~~~--~~~~~~~vi~~~SfSK~~~~~G-lRiG~~~~~~~~~~~~~~~- 247 (357)
T PRK14809 173 LDEVEALAERTDE-ETLVVVDEAYGEFAERPSAVA--LVEERDDVAVLRTFSKAYGLAG-LRLGYAVVPEEWADAYARV- 247 (357)
T ss_pred HHHHHHHHHhCcc-CcEEEEechhhhccCCchhHH--HHhhCCCEEEEecchhHhcCcc-hhheeeecCHHHHHHHHHh-
Confidence 5567777777765 789999999988854333211 11112233 37899997 78 8999999999999888641
Q ss_pred ccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC
Q 002941 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795 (863)
Q Consensus 716 ~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~ 795 (863)
..+++.+++++.++.++|+ ++++.++..+..+..++.+.+ .+... .....|+++.+++.+
T Consensus 248 -------~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~----~L~~~----~~~~~g~f~~~~~~~-- 307 (357)
T PRK14809 248 -------NTPFAASELACRAGLAALD---DDEHVERTVETARWAREYIRE----ELDAP----TWESAGNFVLAEVGD-- 307 (357)
T ss_pred -------CCCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHH----HhcCc----cCCCCCCEEEEECCC--
Confidence 2356678888888887774 455666666555555554433 33322 124567888887631
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEecC-----CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p~g-----~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
..++.+.|.++||+++++. +.+|+. ..+++++++++++|.++++
T Consensus 308 ---------~~~~~~~l~~~gv~v~~g~~f~~~~~iRls---~~~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 308 ---------ASAVAEAAQERGVIVRDCTSFGLPECIRIT---CGTREETERAVEVLNEVLA 356 (357)
T ss_pred ---------HHHHHHHHHHCCEEEEECccCCCCCeEEEe---cCCHHHHHHHHHHHHHHhc
Confidence 3467788899999999752 678886 2357899999999987763
No 165
>PRK07568 aspartate aminotransferase; Provisional
Probab=99.48 E-value=2.4e-11 Score=138.52 Aligned_cols=206 Identities=18% Similarity=0.179 Sum_probs=133.0
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhc-CCCCcEE---EeccccC-CC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL-GCVPDIA---CYGKLLT-GG 694 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~-gv~PDiv---t~sKgLg-gG 694 (863)
+.+++.| ++..|. +.+.+.+++|.++|+++|+++|+||++.+|...|.. .....+ +..+.++ +|||.++ .|
T Consensus 165 ~v~i~~p--~NPtG~-~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G 241 (397)
T PRK07568 165 AILISNP--GNPTGV-VYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACG 241 (397)
T ss_pred EEEEECC--CCCCCc-cCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCC
Confidence 4455677 678885 456777999999999999999999999988655532 122122 2234454 6799998 48
Q ss_pred CCCceeeecc-HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 695 VIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 695 ~~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
+++|+++++ +++++.+... ...+++.++++..++.++|+. .+++.+++++..+..++.+ .+.+++
T Consensus 242 -~R~G~~~~~~~~~~~~~~~~-------~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l----~~~L~~ 307 (397)
T PRK07568 242 -ARIGCLISKNKELIAAAMKL-------CQARLSPPTLEQIGAAALLDT--PESYFDEVREEYKKRRDIL----YEELNK 307 (397)
T ss_pred -cceEEEecCCHHHHHHHHHH-------hhccCCCCcHHHHHHHHHhhC--CHHHHHHHHHHHHHHHHHH----HHHHhc
Confidence 899999984 7888776431 112355677777777776653 2334444444444444433 334445
Q ss_pred CCCeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHHH------CCcEEEec----------CCEEEEecCCCCcH
Q 002941 774 HRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLRE------DGVYMRPL----------GNVIYLMCGPCSSP 836 (863)
Q Consensus 774 ~p~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~e------~GV~~~p~----------g~~lr~~ppl~~t~ 836 (863)
++.+......| +++.+.+.... ...+.+.|.+ +||++.|+ .+.+|++ ++.++
T Consensus 308 ~~~~~~~~p~g~~~~~~~l~~~~---------~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls--~~~~~ 376 (397)
T PRK07568 308 IPGVVCEKPKGAFYIIAKLPVDD---------AEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIA--YVLNE 376 (397)
T ss_pred CCCceecCCCcceEEEEecCCCC---------HHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEE--EeCCH
Confidence 55444344445 45566664321 4456676764 69999872 1478886 34678
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 837 eeid~~v~~L~~~l~~l~ 854 (863)
+++++++++|.++++++.
T Consensus 377 ~~~~~~~~~l~~~l~~~~ 394 (397)
T PRK07568 377 EDLKRAMEILKEALEKYN 394 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999887654
No 166
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=99.48 E-value=5.8e-11 Score=135.98 Aligned_cols=340 Identities=11% Similarity=-0.020 Sum_probs=197.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCC------CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN------VYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~------~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeA 473 (863)
-|||..+ .|. -.+.|.+|+.+.+.+.......+. ..+...++.++|+++++....+.++|+++++++
T Consensus 25 iYld~a~------~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~ 97 (406)
T PRK09295 25 AYLDSAA------SAQ-KPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEG 97 (406)
T ss_pred EEEeCcc------ccc-CCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHH
Confidence 6888554 222 457888998887765321110111 123455777888888874213689999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcc
Q 002941 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (863)
Q Consensus 474 vE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (863)
+..+++....... . . ..+||+....||+.......+.. ..+.
T Consensus 98 l~~~~~~~~~~~~-~----~------------gd~vl~~~~~~~s~~~~~~~~~~--------------~~g~------- 139 (406)
T PRK09295 98 INLVANSWGNSNV-R----A------------GDNIIISEMEHHANIVPWQMLCA--------------RVGA------- 139 (406)
T ss_pred HHHHHHHhhhhcC-C----C------------cCEEEECcchhhHHHHHHHHHHH--------------HcCc-------
Confidence 9888765310000 0 1 15688887777764221111100 0000
Q ss_pred cccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
.+..++.+... .-| .+.+++.+. + ++..|++.-+ ++..
T Consensus 140 ----~v~~v~~~~~~---------------------~~d--------~~~l~~~i~-------~-~t~lv~l~~~-~n~t 177 (406)
T PRK09295 140 ----ELRVIPLNPDG---------------------TLQ--------LETLPALFD-------E-RTRLLAITHV-SNVL 177 (406)
T ss_pred ----EEEEEecCCCC---------------------CCC--------HHHHHHhcC-------C-CcEEEEEecc-hhcc
Confidence 01111111000 001 234444442 2 3445555554 7888
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhh
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l 711 (863)
|.+.+ +++|.++|++||+++|+|++| ++|..- ...+. ..+|++++| |.+| . .-+|++++++++.+.+
T Consensus 178 G~~~~----~~~i~~~~~~~~~~vivD~a~-~~g~~~--~~~~~--~~~D~~~~s~~K~~g-p-~G~G~l~~~~~~~~~~ 246 (406)
T PRK09295 178 GTENP----LAEMIALAHQHGAKVLVDGAQ-AVMHHP--VDVQA--LDCDFYVFSGHKLYG-P-TGIGILYVKEALLQEM 246 (406)
T ss_pred cccCC----HHHHHHHHHHcCCEEEEEccc-ccCccc--cCchh--cCCCEEEeehhhccC-C-CCcEEEEEchHhHhhC
Confidence 98887 899999999999999999999 455431 22222 347998876 9444 2 2368888999887765
Q ss_pred hcCCcc----ce--eecc----------cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 712 VGDSKL----KA--LLHG----------HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 712 ~~~~~~----~~--~~~~----------~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
...... .. .... -+-+.|..++++..++++++.+.+ .+++++..+.+.+++.+. +.+.+
T Consensus 247 ~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~l~~~l~~~----l~~~~ 321 (406)
T PRK09295 247 PPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALG-LNNIAEYEQNLMHYALSQ----LESVP 321 (406)
T ss_pred CCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHH----HhcCC
Confidence 321000 00 0000 111457778889999999886543 245556666666655433 34444
Q ss_pred CeeEec--ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------------CCEEEEecCCCCcHHHHH
Q 002941 776 TVQRVV--ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 776 ~v~~vr--g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------------g~~lr~~ppl~~t~eeid 840 (863)
.+.-+. ..+.++.+.+.... ...+.+.|.++||.++.. ...+|+++....|++|||
T Consensus 322 ~~~~~~~~~~~~iv~~~~~~~~---------~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did 392 (406)
T PRK09295 322 DLTLYGPQNRLGVIAFNLGKHH---------AYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVD 392 (406)
T ss_pred CEEEeCCCCCceEEEEEECCcC---------HHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHH
Confidence 332111 12446666654321 345777888999999742 147999999999999999
Q ss_pred HHHHHHHHHHH
Q 002941 841 QLLLKLYQRLE 851 (863)
Q Consensus 841 ~~v~~L~~~l~ 851 (863)
.++++|++...
T Consensus 393 ~l~~~l~~i~~ 403 (406)
T PRK09295 393 RLVAGLQRIHR 403 (406)
T ss_pred HHHHHHHHHHH
Confidence 99999987643
No 167
>PRK07681 aspartate aminotransferase; Provisional
Probab=99.47 E-value=1.9e-11 Score=139.71 Aligned_cols=334 Identities=11% Similarity=0.018 Sum_probs=193.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc-CCCCCChHHHHHHHHHHhhcCCC-CC-CeEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENVYEPALECAELLLQGVGKG-WA-SRAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~-~~~~~~~~~~eLae~L~~~~p~~-~~-~~v~f~~SGSeAvE~ 476 (863)
.++|+..|. ..++ -.+.+.+++.+.+.+..... ...+..+....+++.+....+.. .. +.+++++++++|...
T Consensus 33 ~~i~l~~g~--p~~~--~~~~~~~~~~~~~~~~~~~~y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~ 108 (399)
T PRK07681 33 KMIDLSIGN--PDMP--PADFVREEMVHTANQKESYGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVH 108 (399)
T ss_pred CeEEeCCCC--CCCC--CCHHHHHHHHHHHhccccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHH
Confidence 567776653 2244 36788888887765422111 01223344555666665432211 12 579999999999888
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++...+ .| ..|+...-+|.+....+...+
T Consensus 109 ~~~~~~~---------~G------------d~Vlv~~P~y~~~~~~~~~~G----------------------------- 138 (399)
T PRK07681 109 LPMVYAN---------PG------------DIILVPDPGYTAYETGIQMAG----------------------------- 138 (399)
T ss_pred HHHHhCC---------CC------------CEEEECCCCccchHHHHHhcC-----------------------------
Confidence 7765421 12 568888888876543322211
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
...+++|-.. +..|. -| .+.+++.+. +..-+.+++.| ++..|.+
T Consensus 139 --~~~~~v~~~~---------------~~~~~--~d--------~~~l~~~~~-------~~~k~v~l~~P--~NPTG~~ 182 (399)
T PRK07681 139 --ATSYYMPLKK---------------ENDFL--PD--------LELIPEEIA-------DKAKMMILNFP--GNPVPAM 182 (399)
T ss_pred --CEEEEEecCC---------------CCCCc--CC--------HHHHHHhcc-------ccceEEEEeCC--CCCcCcC
Confidence 1111122000 00000 01 123333332 12234455568 7899965
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcCCCCc----EEEeccccC-CCCCCceeeeccHHHHHh
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD----IACYGKLLT-GGVIPLAATLATNAVFDS 710 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PD----ivt~sKgLg-gG~~Pigav~~~~~i~~~ 710 (863)
. +++-+++|.++|++||+++|.||++..|-..+... ....+.-.+| +-+|||.++ .| +.+|++++++++++.
T Consensus 183 ~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~~i~~~~l~~~ 260 (399)
T PRK07681 183 A-HEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAG-SRIGYMIGNEEIVRA 260 (399)
T ss_pred C-CHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCcc-ceeEEEecCHHHHHH
Confidence 5 67889999999999999999999998773333211 1111111122 237899997 78 899999999999988
Q ss_pred hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-cccceEEEE
Q 002941 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VALGTLCAI 789 (863)
Q Consensus 711 l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-rg~Gl~~~i 789 (863)
+... ....+++.+.++..++.+.|+. ...+.++.++..+..++.+ .+.+.+++ +.-. ..-|.++.+
T Consensus 261 ~~~~------~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l----~~~L~~~g-~~~~~p~~g~f~~~ 327 (399)
T PRK07681 261 LTQF------KSNTDYGVFLPIQKAACAALRN--GAAFCEKNRGIYQERRDTL----VDGFRTFG-WNVDKPAGSMFVWA 327 (399)
T ss_pred HHHH------HhhcccCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHH----HHHHHHCC-CcccCCCeeeEEEE
Confidence 7641 1123455667777777776652 1234444444444444433 33344443 2222 233677777
Q ss_pred EEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
.+.+.. ...+++..+++ +||++.|+ .+.+|+.. ..+++++++++++|.+
T Consensus 328 ~l~~~~--------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~--~~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 328 EIPKGW--------TSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIAL--VQDEEVLQQAVENIRN 384 (399)
T ss_pred ECCCCC--------CHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEe--cCCHHHHHHHHHHHHH
Confidence 775321 24568888877 89999873 14688753 4678999999999987
No 168
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=99.47 E-value=1.5e-11 Score=137.25 Aligned_cols=320 Identities=13% Similarity=0.078 Sum_probs=195.2
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC--CC
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG--WA 461 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~--~~ 461 (863)
+.|.+.+...|+ ..+|+..+ .+.+|. .|.+++++.+.+..-.+. .|+.+...+|.+.++++.+.. ..
T Consensus 8 ~~~~~~~~~~~~----~~i~l~~~--~~~~~~--p~~~~~~~~~~~~~~~~~---~Y~~~~~~~Lr~aia~~~~~~~~~~ 76 (335)
T PRK14808 8 AKRAYPYETEKR----DRTYLALN--ENPFPF--PEDLVDEVFRRLNSDTLR---IYYDSPDEELIEKILSYLDTDFLSK 76 (335)
T ss_pred hccCcCCCCCCC----ceeEecCC--CCCCCC--CHHHHHHHHHHhhhhhhh---cCCCCChHHHHHHHHHHhCCCCCCc
Confidence 344455555665 77887653 456664 689999998876431111 122234556777777766521 13
Q ss_pred CeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcc
Q 002941 462 SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWY 541 (863)
Q Consensus 462 ~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~ 541 (863)
+.|++++++++++..+++.. ..|++.+-+|.+....+...+.
T Consensus 77 ~~i~it~Ga~~~i~~~~~~~-------------------------d~v~v~~P~y~~~~~~~~~~g~------------- 118 (335)
T PRK14808 77 NNVSVGNGADEIIYVMMLMF-------------------------DRSVFFPPTYSCYRIFAKAVGA------------- 118 (335)
T ss_pred ceEEEcCCHHHHHHHHHHHh-------------------------CcEEECCCCHHHHHHHHHHcCC-------------
Confidence 67999999999998887533 2478888888776443332211
Q ss_pred cCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEE
Q 002941 542 SGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG 621 (863)
Q Consensus 542 ~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iA 621 (863)
..+++|... .+. .+ + ..+. ....
T Consensus 119 ------------------~~~~v~~~~-----------------~~~--~~---------~---~~~~--------~~~~ 141 (335)
T PRK14808 119 ------------------KFLEVPLTK-----------------DLR--IP---------E---VNVG--------EGDV 141 (335)
T ss_pred ------------------eEEEecCCC-----------------cCC--CC---------h---hHcc--------CCCE
Confidence 011112000 000 00 0 0111 1345
Q ss_pred EEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCC
Q 002941 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIP 697 (863)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~P 697 (863)
.++..| ++..|...+ .+ ++.+++ ++++++|.||++..|. +..+. ....-.+.++ +|||.++ .| +.
T Consensus 142 i~i~nP--~NPTG~~~s-~~---~l~~l~-~~~~~ii~DE~Y~~f~--~~~~~-~~~~~~~~vi~~~S~SK~~~l~G-lR 210 (335)
T PRK14808 142 VFIPNP--NNPTGHVFE-RE---EIERIL-KTGAFVALDEAYYEFH--GESYV-DLLKKYENLAVIRTFSKAFSLAA-QR 210 (335)
T ss_pred EEEeCC--CCCCCCCcC-HH---HHHHHH-hcCCEEEEECchhhhc--CCchH-HHHHhCCCEEEEEechhhccCcc-cc
Confidence 678888 789997775 44 444555 5899999999998873 22111 1111123444 6899998 78 89
Q ss_pred ceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 002941 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (863)
Q Consensus 698 igav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v 777 (863)
+|++++++++++.+... . .+++.++++..++.++++. .++..+..+.....++.+ .+.+.+.+ +
T Consensus 211 vG~~v~~~~~~~~l~~~-------~-~~~~~~~~~q~a~~~~l~~---~~~~~~~~~~~~~~r~~l----~~~L~~~g-~ 274 (335)
T PRK14808 211 IGYVVSSEKFIDAYNRV-------R-LPFNVSYVSQMFAKVALDH---REIFEERTKFIVEERERM----KSALREMG-Y 274 (335)
T ss_pred eEEEEeCHHHHHHHHHh-------c-CCCCCCHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHH----HHHHHHCC-C
Confidence 99999999999988641 1 2355677777777777762 223222222222223333 33444444 3
Q ss_pred eEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 778 QRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 778 ~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
.-..+.|.++.+.+.... ...+.+.|.++||+++...+.+|++ +.+.++.++++++|++
T Consensus 275 ~~~~~~g~f~~~~l~~~~---------~~~~~~~l~~~Gi~V~~~~~~~Ris---i~~~~~~~~~~~~l~~ 333 (335)
T PRK14808 275 RITDSRGNFVFIFMEKEE---------KERLLEHLRAKNIAVRSFREGVRIT---IGKREENDMILKELEV 333 (335)
T ss_pred EECCCCCeEEEEeCCCcc---------HHHHHHHHHHCCeEEEECCCCeEEe---cCCHHHHHHHHHHHHh
Confidence 334567888888876332 3568889999999999887889987 6678899999988864
No 169
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=99.47 E-value=1.6e-11 Score=137.95 Aligned_cols=215 Identities=18% Similarity=0.153 Sum_probs=137.0
Q ss_pred HHHHHHHhcCCCCCCCC-cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-c-h-hhh
Q 002941 602 SYISQNLLQNPGLKVSG-CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-T-T-ADL 677 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~-~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~-a-~e~ 677 (863)
+.+++.+++. ...+ ++.++++... +++.|.. .+.+.+++|.++|++||+++|+||++..+ ..+.. + . ...
T Consensus 133 ~~l~~~l~~~---~~~~~~~~~v~~~~p-~nPtG~~-~~~~~l~~l~~~~~~~~~~ii~De~y~~~-~~~~~~~~~~~~~ 206 (363)
T PF00155_consen 133 EALEEALDEL---PSKGPRPKAVLICNP-NNPTGSV-LSLEELRELAELAREYNIIIIVDEAYSDL-IFGDPDFGPIRSL 206 (363)
T ss_dssp HHHHHHHHTS---HTTTETEEEEEEESS-BTTTTBB---HHHHHHHHHHHHHTTSEEEEEETTTTG-BSSSSHTHHHHGH
T ss_pred cccccccccc---cccccccceeeeccc-ccccccc-cccccccchhhhhcccccceeeeeceecc-ccCCCccCccccc
Confidence 4566666541 1112 3455556554 8888864 47888999999999999999999999776 44432 1 1 222
Q ss_pred cCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHHhH
Q 002941 678 LGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNI 752 (863)
Q Consensus 678 ~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~~l 752 (863)
..-.++++ ++||++| -| +++|++++++++++.+.. ...++..+.+.++++.+.+.--.. .++.++.
T Consensus 207 ~~~~~~vi~~~S~SK~~g~~G-lRvG~i~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 277 (363)
T PF00155_consen 207 LDEDDNVIVVGSLSKSFGLPG-LRVGYIVAPPELIERLRR--------FQRSGLSSSPMQAAAAAALSDPELVEKWLEEL 277 (363)
T ss_dssp HTTTSTEEEEEESTTTTTSGG-GTEEEEEEEHHHHHHHHH--------HHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccceeeeeccccccccc-cccccccchhhhhhhhhh--------ccccccccchhhHHHHHhhhcccccccccccc
Confidence 33344533 6799997 67 899999999999998874 222333366666666666553221 1133344
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec-----CCE
Q 002941 753 IPERRILRELWDLELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNV 825 (863)
Q Consensus 753 ~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-----g~~ 825 (863)
.+..+..++.+ .+.+.+... ..... -|.++.+.+... ...++++.|+++ ||.+.|. .+.
T Consensus 278 ~~~l~~~~~~l----~~~L~~~~~-~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~~~~gi~v~pg~~~~~~~~ 343 (363)
T PF00155_consen 278 RERLRENRDLL----REALEEIGI-TVLPPEAGFFLWVRLDPN---------DAEELAQELLEEYGILVRPGSYFGVPGY 343 (363)
T ss_dssp HHHHHHHHHHH----HHHHHHTTS-EEEHHSBSSEEEEEESHH---------HHHHHHHHHHHHHTEEEEEGGGGTSTTE
T ss_pred hhhHHHHHHHH----HHHHHHhhh-heeeccCccEEEEEcccc---------hHHHHHHHHHHhCCEEEEecCCCCCCCE
Confidence 44444444433 333334432 23333 556666666532 357789999998 9999984 378
Q ss_pred EEEecCCCCcHHHHHHHHHHH
Q 002941 826 IYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 826 lr~~ppl~~t~eeid~~v~~L 846 (863)
+|++. ..+++|++++++++|
T Consensus 344 iRi~~-a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 344 IRISL-ASHSEEDLEEALERL 363 (363)
T ss_dssp EEEEG-GCSCHHHHHHHHHHH
T ss_pred EEEEe-ccCCHHHHHHHHhhC
Confidence 99986 689999999999876
No 170
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=99.47 E-value=2.6e-11 Score=131.98 Aligned_cols=223 Identities=16% Similarity=0.159 Sum_probs=151.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC-CcchhhhcC-
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-VETTADLLG- 679 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG-~~~a~e~~g- 679 (863)
+.||+.+.+ +....-++|.| ++.+| .++..+.|.+|.+||.+||+.+|.||||+-+--.| +.+.+....
T Consensus 148 ~~LE~~~~~------~~vkl~iLCnP--HNP~G-rvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~ 218 (388)
T COG1168 148 DALEKAFVD------ERVKLFILCNP--HNPTG-RVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSE 218 (388)
T ss_pred HHHHHHHhc------CCccEEEEeCC--CCCCC-ccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcCh
Confidence 678888863 33467889999 89988 78899999999999999999999999999986666 443333222
Q ss_pred -CCCcEEE-e--ccccC-CCCCCceeee-ccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHH
Q 002941 680 -CVPDIAC-Y--GKLLT-GGVIPLAATL-ATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (863)
Q Consensus 680 -v~PDivt-~--sKgLg-gG~~Pigav~-~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~ 753 (863)
..-..+| + ||+.. .| +-.|.++ .++++...+... +......+.|.+++-|..++.+. .+.|++.+.
T Consensus 219 ~~a~~~it~~saSKtFNlaG-L~~a~~Ii~n~~lr~~~~~~-----l~~~~~~~~n~lg~~A~~aAY~~--G~~WLd~L~ 290 (388)
T COG1168 219 RFADNSITLTSASKTFNLAG-LKCAYIIISNRELRAKFLKR-----LKRNGLHGPSALGIIATEAAYNQ--GEPWLDELL 290 (388)
T ss_pred hhhcceEEEeeccccccchh-hhheeEEecCHHHHHHHHHH-----HHHhcCCCCchHHHHHHHHHHHh--chHHHHHHH
Confidence 1112333 3 68774 45 5555554 566664444321 11234456788999999999884 677888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEE-EEEccCCcCCCCchHHHHHHHHHHHH-------CCcEEEecC-C
Q 002941 754 PERRILRELWDLELIQQISSHRTVQRVVALGTLCA-IELQAAGCNAGYGSLYAASLLKKLRE-------DGVYMRPLG-N 824 (863)
Q Consensus 754 ~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~-iel~~~~~~~~~~~~~~~~l~~~l~e-------~GV~~~p~g-~ 824 (863)
+..+..++++.+.+. +..|.|.-....|+++. +++..-... ..++.+.|++ .|...++.| +
T Consensus 291 ~yl~~N~~~~~~~l~---~~~P~v~v~~p~gTYL~WLD~r~l~l~-------d~~l~~~ll~~akVal~~G~~FG~~g~g 360 (388)
T COG1168 291 EYLKDNRDYVADFLN---KHLPGVKVTEPQGTYLAWLDCRELGLD-------DSELAEFLLEEAKVALSPGSTFGEEGSG 360 (388)
T ss_pred HHHHHHHHHHHHHHH---hhCCCcEEecCCCceeeeeeccccCCC-------hHHHHHHHHHhhcEeccCCCccCcCCCc
Confidence 877777776654433 34588888888998666 777653311 1234444443 344444445 5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 825 VIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 825 ~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.+|+ ++.++.+-+++++++|..+++.+
T Consensus 361 f~Rl--N~acpr~~L~eal~ri~~al~~~ 387 (388)
T COG1168 361 FVRL--NFACPRAILEEALERLKRALKKR 387 (388)
T ss_pred eEEE--ecCCCHHHHHHHHHHHHHHHhcc
Confidence 6665 78899999999999999887653
No 171
>PRK07777 aminotransferase; Validated
Probab=99.47 E-value=3.7e-11 Score=136.69 Aligned_cols=207 Identities=13% Similarity=0.133 Sum_probs=126.4
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhc-CCCCc-E--EEeccccC-C
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLL-GCVPD-I--ACYGKLLT-G 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~-gv~PD-i--vt~sKgLg-g 693 (863)
+.+|++... ++..|... +.+.+++|.++|++||+++|+||++.+|...+. ......+ +...+ + .+|||.++ .
T Consensus 160 ~~~v~l~~p-~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 237 (387)
T PRK07777 160 TRALIVNSP-HNPTGTVL-TAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVT 237 (387)
T ss_pred cEEEEEcCC-CCCCCccC-CHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCc
Confidence 445555554 78888755 788899999999999999999999987743332 1122221 22222 2 26899998 6
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +++|++++++++++.+... ....++..+++...++..+++. .+.+.+.+++..+..++.+.+. +.+
T Consensus 238 G-lRiG~~~~~~~l~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~----L~~ 304 (387)
T PRK07777 238 G-WKIGWACGPAPLIAAVRAA------KQYLTYVGGAPFQPAVAHALDH--EDAWVAALRDSLQAKRDRLAAG----LAE 304 (387)
T ss_pred C-ceeEEEecCHHHHHHHHHH------HhhcccCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHHH----HHh
Confidence 7 8999999999998877642 1223444444444444454542 2344445555444455544333 333
Q ss_pred CCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecC----------CEEEEecCCCCcHHHHHH
Q 002941 774 HRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLG----------NVIYLMCGPCSSPEVCSQ 841 (863)
Q Consensus 774 ~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g----------~~lr~~ppl~~t~eeid~ 841 (863)
.. +.-.... |.++.+.+..... ..+..+++.|+ ++||++.|+. +.+|+.. ..+++++++
T Consensus 305 ~~-~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~--~~~~~~l~~ 375 (387)
T PRK07777 305 AG-FEVHDSAGTYFLCADPRPLGY------DDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAF--CKRDDTLDE 375 (387)
T ss_pred CC-CCccCCCcceEEEecccccCC------CCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEe--cCCHHHHHH
Confidence 32 1112233 4455566542110 02467888886 5799997631 3688754 457899999
Q ss_pred HHHHHHHHH
Q 002941 842 LLLKLYQRL 850 (863)
Q Consensus 842 ~v~~L~~~l 850 (863)
++++|.+..
T Consensus 376 ~l~~l~~~~ 384 (387)
T PRK07777 376 AIRRLRALR 384 (387)
T ss_pred HHHHHHHHh
Confidence 999887653
No 172
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=99.47 E-value=2.2e-11 Score=135.60 Aligned_cols=195 Identities=14% Similarity=0.101 Sum_probs=129.1
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~ 696 (863)
..+++.| ++..|... +.+.+++|.++|+++|+++|.||++..+........ +.-.++++ +|||.+| .| +
T Consensus 127 ~v~l~nP--~NPTG~~~-s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~---~~~~~~vi~~~SfSK~~gl~G-l 199 (330)
T PRK05664 127 VLVVVNP--NNPTGRRF-DPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAA---CAHRPGLIVLRSFGKFFGLAG-A 199 (330)
T ss_pred EEEEeCC--cCCCCCcc-CHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccc---cccCCCEEEEeeccccccCCC-c
Confidence 5788999 68889755 667799999999999999999999976632112211 22134444 7899998 88 8
Q ss_pred CceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002941 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~ 776 (863)
.+|++++++++++.+... ..++..+.++.+++.++|+ +..+.++.++..+..++.+. +.+.+++.
T Consensus 200 RiG~~v~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~L~---~~~~~~~~~~~~~~~r~~l~----~~L~~~~~ 264 (330)
T PRK05664 200 RLGFVLAEPALLRALAEL--------LGPWTVSGPTRWLAQAALA---DTPWQRRQRERLLAASQRLA----ALLRRHGL 264 (330)
T ss_pred ceEEEEeCHHHHHHHHHh--------cCCCCCCHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHHH----HHHHHCCC
Confidence 999999999999988642 1244556777777777775 33333444444444444443 33344432
Q ss_pred eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 777 VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 777 v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
....|.+.++.+.+. + +..+.+.|.++||+++.++ +.+|++. ..++++.++++++|++..+
T Consensus 265 -~~~~~~~~f~~~~~~--~---------~~~~~~~l~~~gi~v~~f~~~~~iRis~--~~~~~~~~~l~~al~~~~~ 327 (330)
T PRK05664 265 -TPAGGCALFQWVRTE--D---------AAALHEFLARRGILTRLFEQPASLRFGL--PADEADWARLDQALLAYRK 327 (330)
T ss_pred -cccCCcceEEEEecC--C---------HHHHHHHHHHCCeEEEECCCCCeEEEEC--CCCHHHHHHHHHHHHHHHh
Confidence 112233355555442 2 4678889999999998764 7888863 3367888888888776544
No 173
>PRK07550 hypothetical protein; Provisional
Probab=99.47 E-value=2.5e-11 Score=137.95 Aligned_cols=336 Identities=14% Similarity=0.055 Sum_probs=190.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc--ccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~ 476 (863)
..+|+.++... +. -.+.+.+++.+.+..... +....+..+....+++.+.+..+.. ..+.+++++++++|+..
T Consensus 30 ~~i~l~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~ 105 (386)
T PRK07550 30 PLIDLSQAVPG--YP--PPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWA 105 (386)
T ss_pred CeEEeCCCCCC--CC--CCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHH
Confidence 56777765533 22 257788888776643111 1111123344556777776543321 13579999988999888
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++.... .| .+|++-.-+|.+.... +...|
T Consensus 106 ~~~~l~~---------~g------------d~Vlv~~p~y~~~~~~-~~~~g---------------------------- 135 (386)
T PRK07550 106 AMVTLAG---------AG------------DEVILPLPWYFNHKMW-LDMLG---------------------------- 135 (386)
T ss_pred HHHHhcC---------CC------------CEEEEcCCCCcchHHH-HHhcC----------------------------
Confidence 7776521 12 4688777777554211 11100
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
...+++|... +..+ ..| .+.+++.++. ...+.+++.| ++..|..
T Consensus 136 --~~~~~v~~~~---------------~~~~--~~~--------~~~l~~~~~~-------~~~~v~~~~P--~NPtG~~ 179 (386)
T PRK07550 136 --IRPVYLPCDE---------------GPGL--LPD--------PAAAEALITP-------RTRAIALVTP--NNPTGVV 179 (386)
T ss_pred --CEEEEEecCC---------------CcCC--CCC--------HHHHHHHhcc-------cCcEEEEeCC--CCCCCcc
Confidence 0111111000 0000 001 2345555531 2345566777 6788865
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCC--c-chhhhcCCCCcE---EEeccccC-CCCCCceeeeccHHHHH
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--E-TTADLLGCVPDI---ACYGKLLT-GGVIPLAATLATNAVFD 709 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--~-~a~e~~gv~PDi---vt~sKgLg-gG~~Pigav~~~~~i~~ 709 (863)
. +.+.+++|.++|++||+++|.||++..| +.+. . ..+...+...++ .+|||.++ .| +++|++++++++++
T Consensus 180 ~-~~~~~~~i~~~~~~~~~~iI~Dd~y~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~i~~~~~~~~ 256 (386)
T PRK07550 180 Y-PPELLHELYDLARRHGIALILDETYRDF-DSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTG-HRVGAVVASPARIA 256 (386)
T ss_pred c-CHHHHHHHHHHHHHcCeEEEEeccchhh-ccCCCCCcchhhCCCccccEEEEecchhhccCcc-cceEeeecCHHHHH
Confidence 5 6889999999999999999999999877 3221 1 111111112223 37899998 77 89999999999988
Q ss_pred hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEE
Q 002941 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCA 788 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~ 788 (863)
.+... ....+.+.+.++..++.+.|+.+ +++.+++++..+..++.+ .+.+.+++.+ .+... |.++.
T Consensus 257 ~~~~~------~~~~~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~l----~~~L~~~~~~-~~~~~g~~~~~ 323 (386)
T PRK07550 257 EIEKF------MDTVAICAPRIGQIAVAWGLPNL--ADWRAGNRAEIARRRDAF----RAVFARLPGW-ELLASGAYFAY 323 (386)
T ss_pred HHHHH------HhhcccCCCcHHHHHHHHHhccH--HHHHHHHHHHHHHHHHHH----HHHHHhCCCc-eeCCCceEEEE
Confidence 77641 22234455777777777666532 233333333333333322 3344444332 22333 45556
Q ss_pred EEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 789 IELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 789 iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
+.+.... ..+.+++..|. ++||.+.|+ ++.+|++.. ..+++++++++++|.+.
T Consensus 324 ~~~~~~~-------~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~-~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 324 VRHPFPD-------RPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFA-NADVAGIGELVERLRAF 384 (386)
T ss_pred ecCCCCC-------CCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEee-cCCHHHHHHHHHHHHhh
Confidence 6664311 02556777765 689999873 257888753 35789999999988764
No 174
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=99.47 E-value=8.1e-11 Score=134.43 Aligned_cols=209 Identities=11% Similarity=0.059 Sum_probs=133.2
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVI 696 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~ 696 (863)
++.+|++.-+ ++..|.+.+ +++|.++|++||+++|+|++|. +|.. ..... ...+|++++ .|.+| . .
T Consensus 159 ~~~lv~~~~~-~~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~g~~--~~~~~--~~~~d~~~~s~~K~~g-p-~ 226 (403)
T TIGR01979 159 KTKLVAITHV-SNVLGTVNP----VEEIAKLAHQVGAKVLVDGAQA-VPHM--PVDVQ--ALDCDFYVFSGHKMYG-P-T 226 (403)
T ss_pred CCeEEEEEcc-cccccccCC----HHHHHHHHHHcCCEEEEEchhh-cCcc--ccCcc--ccCCCEEEEecccccC-C-C
Confidence 3455666554 788898887 8999999999999999999994 4322 11122 234788755 59664 2 2
Q ss_pred CceeeeccHHHHHhhhcCC----cccee-e---------ccc-CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 002941 697 PLAATLATNAVFDSFVGDS----KLKAL-L---------HGH-SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRE 761 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~----~~~~~-~---------~~~-T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~ 761 (863)
.+|++.+++++.+.+.... ..... . ..+ .-+.+..+++++.++++.+.+.+ .+++.++...+.+
T Consensus 227 G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g-~~~~~~~~~~l~~ 305 (403)
T TIGR01979 227 GIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIG-LENIEAHEHELTA 305 (403)
T ss_pred CceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHH
Confidence 3788889988877654210 00000 0 000 01345667777788888875433 2355555566666
Q ss_pred HHHHHHHHHHhcCCCeeEec-----ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------------C
Q 002941 762 LWDLELIQQISSHRTVQRVV-----ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------G 823 (863)
Q Consensus 762 ~l~~~l~~~~~~~p~v~~vr-----g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------------g 823 (863)
.+.+. ++..+.+.-+. ..+.++.+.+.... ..++.+.|.++||.+++. +
T Consensus 306 ~l~~~----l~~~~g~~~~~~~~~~~~~~~v~~~~~~~~---------~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~ 372 (403)
T TIGR01979 306 YALER----LGEIPGLRIYGPRDAEDRGGIISFNVEGVH---------PHDVGTILDEEGIAVRSGHHCAQPLMRRFGVP 372 (403)
T ss_pred HHHHH----HhcCCCEEEeCCCCccccCceEEEEeCCcC---------HHHHHHHHhhCCEEEcchhhhhHHHHHHhCCC
Confidence 55433 33344332221 23667777774321 346778889999998752 3
Q ss_pred CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 824 NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 824 ~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
..+|++++..+|++|+++++++|+++++.+
T Consensus 373 ~~iRiS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 373 ATCRASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred CEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 679999998899999999999998877654
No 175
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=99.47 E-value=2.3e-11 Score=137.84 Aligned_cols=332 Identities=13% Similarity=0.090 Sum_probs=194.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC-------CCCeEEEeCChhh
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-------WASRAYFSDNGST 472 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~-------~~~~v~f~~SGSe 472 (863)
+++|+.+|. ..++- .|.+.+++.+.+...... ..|+..-..+|-+.|+++++.. ..+.+++++++++
T Consensus 29 ~~~~l~~~~--~~~~~--~~~~~~~~~~~~~~~~~~--~~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~ 102 (374)
T PRK02610 29 QLDRLDTNE--FPYDL--PPDLKQKLAWLYQQGIES--NRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDE 102 (374)
T ss_pred ceeEecCCC--CCCCC--CHHHHHHHHHHHhhcccc--cCCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHH
Confidence 577777643 34553 689999999876652111 1122222345556666555411 1256999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCc
Q 002941 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (863)
Q Consensus 473 AvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (863)
|+..++..... .| ..+|++..-+|.+....+...+.
T Consensus 103 al~~~~~~~~~---------~g-----------~~~Vlv~~P~y~~~~~~~~~~g~------------------------ 138 (374)
T PRK02610 103 LIRSLLIATCL---------GG-----------EGSILVAEPTFSMYGILAQTLGI------------------------ 138 (374)
T ss_pred HHHHHHHHHcC---------CC-----------CCeEEEcCCChHHHHHHHHHcCC------------------------
Confidence 98877654311 11 13688888888765433222110
Q ss_pred ccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE-EEcccccc
Q 002941 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL-IIEPVVHA 631 (863)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAv-IvEPViqg 631 (863)
..+.+|... +.+. -| .+.+++.++. ....++.+| ++.| ++
T Consensus 139 -------~~~~~~~~~----------------~~~~--~d--------~~~l~~~~~~----~~~~~~k~i~l~~P--~N 179 (374)
T PRK02610 139 -------PVVRVGRDP----------------ETFE--ID--------LAAAQSAIEQ----TQNPPVRVVFVVHP--NS 179 (374)
T ss_pred -------EEEEecCCc----------------ccCC--CC--------HHHHHHHHHh----hcCCCceEEEEeCC--CC
Confidence 001111000 0000 01 1344455531 011244445 4556 89
Q ss_pred CCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHH
Q 002941 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAV 707 (863)
Q Consensus 632 ~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i 707 (863)
..|... +.+.++.+.++| +|+++|.||++..|..... .....-.++++ +|||.++ .| +++|++++++++
T Consensus 180 PTG~~~-s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~~---~~~~~~~~~~ivi~SfSK~~g~~G-lRiG~~v~~~~l 252 (374)
T PRK02610 180 PTGNPL-TAAELEWLRSLP--EDILVVIDEAYFEFSQTTL---VGELAQHPNWVILRTFSKAFRLAA-HRVGYAIGHPEL 252 (374)
T ss_pred CCCCCC-CHHHHHHHHhcc--CCcEEEEeccccccCccch---HHHHhcCCCEEEEEecchhccCcc-cceeeeecCHHH
Confidence 999776 556678888887 4999999999987732111 11111124444 6899995 77 899999999999
Q ss_pred HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEE
Q 002941 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLC 787 (863)
Q Consensus 708 ~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~ 787 (863)
++.+.... ..++.+.++..++.++|+.. +.+.+++....+. ++ .+.+.+..++.+......|.++
T Consensus 253 ~~~l~~~~--------~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~-r~----~l~~~L~~~~~~~~~p~~g~f~ 317 (374)
T PRK02610 253 IAVLEKVR--------LPYNLPSFSQLAAQLALEHR--QELLAAIPEILQE-RD----RLYQALQELPQLRVWPSAANFL 317 (374)
T ss_pred HHHHHHhc--------CCCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHH-HH----HHHHHHHhCCCcEeCCCcceEE
Confidence 99886421 23445677777777766521 3334444433322 33 2334444555443334557777
Q ss_pred EEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 788 AIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 788 ~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.+.+.... ....+++.|.++||++++..+.+|+.. .+++++++++++|.++++.+
T Consensus 318 ~~~l~~~~--------~~~~~~~~l~~~gi~v~~~~~~lRls~---~~~~~~~~~l~~l~~~l~~~ 372 (374)
T PRK02610 318 YLRLSQDA--------ALAALHQALKAQGTLVRHTGGGLRITI---GTPEENQRTLERLQAALTQL 372 (374)
T ss_pred EEeCCCCC--------CHHHHHHHHHHCCEEEEeCCCeEEEeC---CCHHHHHHHHHHHHHHHhhc
Confidence 77775321 246788889999999998778899862 34677899999998877654
No 176
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=99.46 E-value=2.8e-11 Score=136.29 Aligned_cols=204 Identities=10% Similarity=0.039 Sum_probs=128.6
Q ss_pred ccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCCCCCCceeeeccHHH
Q 002941 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAV 707 (863)
Q Consensus 630 qg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLggG~~Pigav~~~~~i 707 (863)
.+..|++.+ +++|.++|++||+++|+|.++ ++|.. .+....+ .+|+++ +.|+|.|+ .-+|+++++++.
T Consensus 139 ~~~tG~~~~----i~~I~~l~~~~g~~livD~~~-~~g~~--~~~~~~~--~~D~~~~s~~K~l~~p-~G~G~l~~~~~~ 208 (363)
T TIGR02326 139 ETTTGILNP----IEAVAKLAHRHGKVTIVDAMS-SFGGI--PIDIAEL--HIDYLISSANKCIQGV-PGFGFVIARQAE 208 (363)
T ss_pred cCCccccCc----HHHHHHHHHHcCCEEEEEccc-cccCc--ccchhhc--CccEEEecCccccccC-CcceEEEECHHH
Confidence 455788876 799999999999999999998 46543 2223333 468775 47999765 446889999988
Q ss_pred HHhhhcCCccce---------e---ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 708 FDSFVGDSKLKA---------L---LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 708 ~~~l~~~~~~~~---------~---~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
++.+........ + .....|+.++.+..+..++++.+.++...++.+++.+.+++.+.+.+.+. ...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~--g~~ 286 (363)
T TIGR02326 209 LAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL--GFE 286 (363)
T ss_pred HHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc--CCe
Confidence 776542111000 0 00123456777888888888877544333445555555555554443322 111
Q ss_pred CeeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec----CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 776 TVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 776 ~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~----g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.+... ...+.+..+.+.... ......+.+.|.++||.+++. .+.+|+.+...++.+++++++++|++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~L~~~gi~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 287 PLLDDEIQSPIITSFYSPEDP------DYRFADFYQRLKEQGFVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAM 360 (363)
T ss_pred eccCcccCCceEEEEECCCCC------CCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 11111 012344555554310 001456888999999999875 3789998655679999999999998876
Q ss_pred H
Q 002941 851 E 851 (863)
Q Consensus 851 ~ 851 (863)
.
T Consensus 361 ~ 361 (363)
T TIGR02326 361 Y 361 (363)
T ss_pred C
Confidence 3
No 177
>PRK06348 aspartate aminotransferase; Provisional
Probab=99.46 E-value=3.6e-11 Score=136.66 Aligned_cols=203 Identities=19% Similarity=0.173 Sum_probs=130.8
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc-CCCCcEE---EeccccC-CCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL-GCVPDIA---CYGKLLT-GGV 695 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~-gv~PDiv---t~sKgLg-gG~ 695 (863)
+.++..| ++..|... +.+.+++|.++|++||+++|.||++..|...+..-....+ +..+.++ +|||.++ .|
T Consensus 165 ~v~l~~p--~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G- 240 (384)
T PRK06348 165 AIILNSP--NNPTGAVF-SKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTG- 240 (384)
T ss_pred EEEEeCC--CCCCCcCC-CHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCcc-
Confidence 4455667 78888655 7888999999999999999999999877332221111111 2223333 6899998 78
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+.+|++++++++.+.+..- ....+++.++++..++.++|+. .+.+.+++++..+..++.+. +.+...+
T Consensus 241 lRiG~~v~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~~~~----~~L~~~~ 308 (384)
T PRK06348 241 WRIGYVIAPDYIIETAKII------NEGICFSAPTISQRAAIYALKH--RDTIVPLIKEEFQKRLEYAY----KRIESIP 308 (384)
T ss_pred ccceeeecCHHHHHHHHHH------HHhccCCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHH----HHHhcCC
Confidence 8999999999998877631 2234567788888888887763 23344444444433334332 3333444
Q ss_pred CeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHH
Q 002941 776 TVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 776 ~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L 846 (863)
.+.-.... |.++.+++.... ....+++..|+ ++||.+.|+ .+.+|+.. ..+++++++++++|
T Consensus 309 ~~~~~~p~gg~~~~~~~~~~~-------~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~al~~l 379 (384)
T PRK06348 309 NLSLHPPKGSIYAFINIKKTG-------LSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLAC--TVGIEVLEEAFNRI 379 (384)
T ss_pred CceeccCCeeEEEEEecccCC-------CCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEe--cCCHHHHHHHHHHH
Confidence 33323343 455667775321 01456788776 579999863 25788864 46888888888887
Q ss_pred HH
Q 002941 847 YQ 848 (863)
Q Consensus 847 ~~ 848 (863)
.+
T Consensus 380 ~~ 381 (384)
T PRK06348 380 EK 381 (384)
T ss_pred Hh
Confidence 54
No 178
>PRK08361 aspartate aminotransferase; Provisional
Probab=99.46 E-value=2.1e-11 Score=138.96 Aligned_cols=209 Identities=14% Similarity=0.125 Sum_probs=129.1
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhcCCCCcEE--EeccccC-CCCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA--CYGKLLT-GGVI 696 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PDiv--t~sKgLg-gG~~ 696 (863)
+.+++.| ++..|... +.+-+++|.++|++|++++|+||++..|...+. ......+....+++ ++||.++ .| +
T Consensus 169 ~v~i~~p--~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G-l 244 (391)
T PRK08361 169 MIVINYP--NNPTGATL-DKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTG-W 244 (391)
T ss_pred EEEEeCC--CCCCCcCc-CHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcH-h
Confidence 4455556 78888655 677889999999999999999999977632222 11111111122333 6799997 77 8
Q ss_pred CceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002941 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~ 776 (863)
.+|++++++++++.+... ....+++.+.+...++.++|+.-...++.+++++..+..++.+ .+.+++.+.
T Consensus 245 RiG~~~~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~L~~~~~ 314 (391)
T PRK08361 245 RLGFVIAPEQVIKDMIKL------HAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLV----LKRLKEMPH 314 (391)
T ss_pred hhhhhccCHHHHHHHHHH------HhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHH----HHHHHhCCC
Confidence 999999999998876531 1112345566777777666642111123444444444444433 344445554
Q ss_pred eeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHH
Q 002941 777 VQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLY 847 (863)
Q Consensus 777 v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~ 847 (863)
+...... |.++.+.+.... . ...+++..|+ ++||.+.|+ .+.+|+. +..+++++++++++|.
T Consensus 315 ~~~~~p~g~~~~~~~l~~~~----~---~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~--~~~~~~~l~~al~~l~ 385 (391)
T PRK08361 315 IKVFEPKGAFYVFANIDETG----M---SSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRIS--YATSKEKLIEAMERME 385 (391)
T ss_pred CeecCCCEEEEEEEECCCCC----C---CHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEE--ecCCHHHHHHHHHHHH
Confidence 4444445 455666775311 0 1456777776 579999873 1578886 3457788888888888
Q ss_pred HHHHH
Q 002941 848 QRLEE 852 (863)
Q Consensus 848 ~~l~~ 852 (863)
+++++
T Consensus 386 ~~l~~ 390 (391)
T PRK08361 386 KALEE 390 (391)
T ss_pred HHHhc
Confidence 87754
No 179
>PLN02656 tyrosine transaminase
Probab=99.46 E-value=6.1e-11 Score=136.04 Aligned_cols=216 Identities=14% Similarity=0.092 Sum_probs=133.1
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcCCCCcEE---Eeccc-cC
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKL-LT 692 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PDiv---t~sKg-Lg 692 (863)
...+.+++.| ++..|.+. +.+.+++|.++|++||+++|+||++..|-..+..+ ....++-...++ +|||. ..
T Consensus 169 ~~~~v~l~~P--~NPtG~~~-s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~ 245 (409)
T PLN02656 169 NTVALVIINP--GNPCGNVY-SYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIV 245 (409)
T ss_pred CceEEEEECC--CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccC
Confidence 4567788888 67888654 67789999999999999999999998774444321 111122122233 57998 45
Q ss_pred CCCCCceeeecc--------HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 002941 693 GGVIPLAATLAT--------NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWD 764 (863)
Q Consensus 693 gG~~Pigav~~~--------~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~ 764 (863)
.| +.+|+++++ +++++.+... .....+.++++.+++.++|+-- .+++.++.++..+..++.+
T Consensus 246 pG-lRiG~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~s~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~r~~~- 315 (409)
T PLN02656 246 PG-WRLGWFVTTDPSGSFRDPKIVERIKKY-------FDILGGPATFIQAAVPTILEQT-DESFFKKTINILKQSSDIC- 315 (409)
T ss_pred cc-eeEEEEEEeCcccccccHHHHHHHHHH-------HhhhcCCCHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHH-
Confidence 67 899999983 5777776531 1111245677888888777631 2334444444444444433
Q ss_pred HHHHHHHhcCCCee-Eeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-----CEEEEecCCCCcHH
Q 002941 765 LELIQQISSHRTVQ-RVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-----NVIYLMCGPCSSPE 837 (863)
Q Consensus 765 ~~l~~~~~~~p~v~-~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-----~~lr~~ppl~~t~e 837 (863)
.+.+..++.+. .++.. |+++.+.+...... ... .....+...|.++||++.|+. +.+|+.. ..+++
T Consensus 316 ---~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~~~-~~~-~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~--~~~~e 388 (409)
T PLN02656 316 ---CDRIKEIPCITCPHKPEGSMAVMVKLNLSLLE-DIS-DDIDFCFKLAREESVIILPGTAVGLKNWLRITF--AADPS 388 (409)
T ss_pred ---HHHHhhCCCCcCCcCCCeEEEEEEecchhhcC-CCC-CHHHHHHHHHHhCCEEEecchhcCCCCeEEEEe--CCCHH
Confidence 33444444322 12344 46667776421000 000 012234567788999999852 5788864 45789
Q ss_pred HHHHHHHHHHHHHHHH
Q 002941 838 VCSQLLLKLYQRLEEF 853 (863)
Q Consensus 838 eid~~v~~L~~~l~~l 853 (863)
++++.+++|.+++...
T Consensus 389 ~l~eal~rl~~~~~~~ 404 (409)
T PLN02656 389 SLEEALGRIKSFYLRH 404 (409)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998877643
No 180
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=99.46 E-value=1.8e-11 Score=137.17 Aligned_cols=318 Identities=14% Similarity=0.096 Sum_probs=187.0
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.++|+..+.. .++ .+|.+.+|+.+.+..... .++.....+|.+.++++++-. .+.+++++++++|...+++
T Consensus 25 ~~i~l~~~~~--~~~--~~~~~~~a~~~~~~~~~~----~y~~~~~~~lr~aia~~~~~~-~~~I~it~G~~~al~~~~~ 95 (353)
T PRK05387 25 KLIKLNTNEN--PYP--PSPKVLEAIRAALGDDLR----LYPDPNADALRQAIAAYYGLD-PEQVFVGNGSDEVLAHAFL 95 (353)
T ss_pred ceeeccCCCC--CCC--CCHHHHHHHHHHhhhhhh----cCCCCcHHHHHHHHHHHhCCC-HHHEEEcCCHHHHHHHHHH
Confidence 5677776543 354 368999999887654211 122223357778888877533 4689999999999998887
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.... .| ..|+...-+|......+ ...| .
T Consensus 96 ~l~~---------~g------------d~vlv~~P~y~~~~~~~-~~~g------------------------------~ 123 (353)
T PRK05387 96 AFFN---------HD------------RPLLFPDITYSFYPVYA-GLYG------------------------------I 123 (353)
T ss_pred HhcC---------CC------------CEEEEeCCCHHHHHHHH-HHcC------------------------------C
Confidence 6521 12 45777776663332111 1101 0
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..+.+|.. +.+ .-| .+.++ + ..-..+++.| ++..|.+.+
T Consensus 124 ~~~~v~~~-----------------~~~--~~d--------~~~l~----~-------~~~~v~~~~P--~NPtG~~~~- 162 (353)
T PRK05387 124 PYEEIPLD-----------------DDF--SID--------VEDYL----R-------PNGGIIFPNP--NAPTGIALP- 162 (353)
T ss_pred EEEEeecC-----------------CCC--CCC--------HHHHH----h-------cCCEEEEeCC--CCCCCCCCC-
Confidence 01111100 000 001 11222 1 1124578888 789998776
Q ss_pred HHHHHHHHHHHHHc-CCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcC
Q 002941 640 PLFQRILVKECQNR-KIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (863)
Q Consensus 640 ~~fL~~Lrelc~~~-gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~ 714 (863)
.+++.++++++ |+++|+||++..|+. .. ........+.++ +|||.++ .| +.+|++++++++.+.+...
T Consensus 163 ---~~~~~~l~~~~~~~~livDe~y~~~~~--~~-~~~~~~~~~~~i~~~S~SK~~~~~G-lR~G~~~~~~~~~~~l~~~ 235 (353)
T PRK05387 163 ---LAEIERILAANPDSVVVIDEAYVDFGG--ES-AIPLIDRYPNLLVVQTFSKSRSLAG-LRVGFAIGHPELIEALNRV 235 (353)
T ss_pred ---HHHHHHHHHhCCCcEEEEeCcccccCC--cc-hHHHHhhCCCEEEEEehhHhhcchh-hhceeeecCHHHHHHHHHh
Confidence 44445555554 999999999977742 11 111111223333 6799987 77 7999999999999887642
Q ss_pred CccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccC
Q 002941 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (863)
Q Consensus 715 ~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~ 794 (863)
. ....+++.++++.+++.++|+ +.++.++.++.....++.+.+ .+.+++. .-....|.++.+.+...
T Consensus 236 ~-----~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~----~L~~~g~-~~~~~~~~~~~~~~~~~ 302 (353)
T PRK05387 236 K-----NSFNSYPLDRLAQAGAIAAIE---DEAYFEETRAKVIATRERLVE----ELEALGF-EVLPSKANFVFARHPSH 302 (353)
T ss_pred h-----ccCCCCCcCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHH----HHHHCCC-eECCCcCcEEEEECCCC
Confidence 1 112355677888887777764 444444555444444444433 3334432 22233455665655421
Q ss_pred CcCCCCchHHHHHHHHHHHHCCcEEEecC-----CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKLREDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-----~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
...++++.|.++||++++.+ +.+|+.. .+++++++++++|++++.
T Consensus 303 ---------~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~---~~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 303 ---------DAAELAAKLRERGIIVRHFNKPRIDQFLRITI---GTDEEMEALVDALKEILA 352 (353)
T ss_pred ---------CHHHHHHHHHHCCEEEEECCCCCCCCeEEEEe---CCHHHHHHHHHHHHHHhh
Confidence 15678888999999997653 5788863 377999999999988654
No 181
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=99.46 E-value=5.3e-11 Score=134.30 Aligned_cols=324 Identities=16% Similarity=0.094 Sum_probs=184.6
Q ss_pred CcHHHHHHHHHHHHhc-ccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccc
Q 002941 417 LQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr 495 (863)
.+|.+.+|+...+.+. +.........+...++.++|+++++.+ .+.++++++|++++..++..+ +.... .+. +
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~~~~~g~~~~~~~~~~~~-~~~~~-~~~--~- 105 (373)
T TIGR03812 32 PHPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLP-DAYGYIVSGGTEANIQAVRAA-KNLAR-EEK--R- 105 (373)
T ss_pred chHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCC-CCCeEEeccHHHHHHHHHHHH-HHHHh-ccC--C-
Confidence 4677778877665443 211100112344578889999998843 246788999999999998766 22110 000 0
Q ss_pred cCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccc
Q 002941 496 LGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (863)
Q Consensus 496 ~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (863)
..+|+..+.+|.+... +....|.. +..++.+..+
T Consensus 106 ----------g~~vl~~~~~h~~~~~-~~~~~G~~----------------------------~~~v~~~~~~------- 139 (373)
T TIGR03812 106 ----------TPNIIVPESAHFSFEK-AAEMLGLE----------------------------LRYAPLDEDY------- 139 (373)
T ss_pred ----------CcEEEECCcchHHHHH-HHHHcCCe----------------------------EEEEeeCCCC-------
Confidence 1467777666544211 11111100 0111111000
Q ss_pred cccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCC
Q 002941 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (863)
Q Consensus 576 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gi 655 (863)
..| .+.+++.+++ +.++.+++.| .+..|.+.+ +++|.++|++||+
T Consensus 140 --------------~~d--------~~~l~~~l~~-------~~~~vv~~~~--~~~tG~~~~----~~~i~~l~~~~~~ 184 (373)
T TIGR03812 140 --------------TVD--------VKDVEDLIDD-------NTIGIVGIAG--TTELGQIDD----IEELSKIALENGI 184 (373)
T ss_pred --------------CcC--------HHHHHHHHhh-------CcEEEEEECC--CCCCCccCC----HHHHHHHHHHcCC
Confidence 011 2445555542 2356677777 366787766 8999999999999
Q ss_pred eEEEecccccccccCC--c-chhhhcCC---CCcEEEec--cccCCCCCCceeee-ccHHHHHhhhcCCccceeeccc--
Q 002941 656 PVIFDEVFTGFWRLGV--E-TTADLLGC---VPDIACYG--KLLTGGVIPLAATL-ATNAVFDSFVGDSKLKALLHGH-- 724 (863)
Q Consensus 656 lLI~DEV~TGfGRtG~--~-~a~e~~gv---~PDivt~s--KgLggG~~Pigav~-~~~~i~~~l~~~~~~~~~~~~~-- 724 (863)
++|+||+|.++ ..+. + .......+ ..|.++++ |...++ .|.|+++ .++++.+.+.... ++....
T Consensus 185 ~livD~a~~~~-~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~-~~~G~~~~~~~~~~~~l~~~~---~~~~~~~~ 259 (373)
T TIGR03812 185 YLHVDAAFGGF-VIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSP-IPAGGILFRSKSYLKYLSVDA---PYLTVKKQ 259 (373)
T ss_pred eEEEEcCchhH-HHHHHhcCCCCCCccccCCCCCEEEECccccCCCc-CCceEEEEeCHHHHhhhcccC---cccCCCCC
Confidence 99999999644 2110 0 00001111 24666653 743344 5777665 5778877664211 111111
Q ss_pred ---CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCc
Q 002941 725 ---SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYG 801 (863)
Q Consensus 725 ---T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~ 801 (863)
+.+.++.+++++.++|+.+.+++ .+++.++..++.+++.+.+. +.+...-+.+...++.+.+. +
T Consensus 260 ~~~~gt~~~~~~~~~~~~l~~l~~~g-~~~~~~~~~~~~~~l~~~L~----~~g~~~~~~~~~~~v~~~~~--~------ 326 (373)
T TIGR03812 260 ATITGTRSGASAAATYAVIKYLGREG-YRKIVAECMENTRYLVEELK----KIGFEPVIEPVLNIVAFEVD--D------ 326 (373)
T ss_pred cceEeechhHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHH----hCCCeEEcCCCceEEEEEeC--C------
Confidence 12345678888999999886544 23444555555555444433 23321112233344444442 1
Q ss_pred hHHHHHHHHHHHHCCcEEEec--CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 802 SLYAASLLKKLREDGVYMRPL--GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 802 ~~~~~~l~~~l~e~GV~~~p~--g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
...+.+.|.++|++++.. .+.+|++++..+|++|+|.++++|++
T Consensus 327 ---~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 327 ---PEEVRKKLRDRGWYVSVTRCPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred ---HHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 246888999999999875 46899998888999999999999865
No 182
>PRK10534 L-threonine aldolase; Provisional
Probab=99.46 E-value=1.4e-11 Score=137.15 Aligned_cols=185 Identities=14% Similarity=0.103 Sum_probs=113.1
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEeccccccccc---CCcchhhhcCCCCc--EEEeccccCCCCCCce-eeeccHHH
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL---GVETTADLLGCVPD--IACYGKLLTGGVIPLA-ATLATNAV 707 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRt---G~~~a~e~~gv~PD--ivt~sKgLggG~~Pig-av~~~~~i 707 (863)
|.+. +.+.++++.++|++||++|++||++. |+.. +... ....-.+| +++|||+++ +++| ++++++++
T Consensus 141 G~v~-~~~~l~~i~~~~~~~~~~lvvDEA~~-~~~~~~~~~~~--~~~~~~~~~~~~s~SK~~~---~~~G~~~~~~~~~ 213 (333)
T PRK10534 141 GKVL-PREYLKQAWEFTRERNLALHVDGARI-FNAVVAYGCEL--KEITQYCDSFTICLSKGLG---TPVGSLLVGNRDY 213 (333)
T ss_pred Ceec-CHHHHHHHHHHHHHcCCeEEeeHHHH-HHHHHHcCCCH--HHHHhcCCEEEEEeEcCCC---CcccceEEcCHHH
Confidence 6555 67778999999999999999999975 5332 2211 11111234 458999766 3567 47789999
Q ss_pred HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEE
Q 002941 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLC 787 (863)
Q Consensus 708 ~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~ 787 (863)
++.+..-. . ..+..+..+.++++++.++|+.. .+.+++..+ .++++. +.+.+.+. .-....+.++
T Consensus 214 i~~~~~~~---~-~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~----~r~~l~----~~L~~~g~-~~~~~~~nfv 278 (333)
T PRK10534 214 IKRARRWR---K-MTGGGMRQAGILAAAGLYALKHN--VARLQEDHD----NAAWLA----EQLREAGA-DVMRQDTNML 278 (333)
T ss_pred HHHHHHHH---H-HhCCchhhHHHHHHHHHHHHHhh--HHHHHHHHH----HHHHHH----HHHHhCCC-ccCCCCceEE
Confidence 98876411 0 11222333456677777777532 111222222 223332 22333332 2223457777
Q ss_pred EEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 788 AIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 788 ~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.+.+... ....+.+.|+++||++++. ..+|+.....+|+|++++++++|++.+
T Consensus 279 ~~~~~~~---------~~~~~~~~l~~~gi~v~~~-~~~rl~~~~r~t~e~~~~~~~~l~~~~ 331 (333)
T PRK10534 279 FVRVGEE---------QAAALGEYMRERNVLINAS-PIVRLVTHLDVSREQLAEVVAHWRAFL 331 (333)
T ss_pred EEECCch---------hHHHHHHHHHHcCeeecCC-ceEEEEEEeCCCHHHHHHHHHHHHHHh
Confidence 7766421 2456788999999999875 456776555689999999999998665
No 183
>PRK08068 transaminase; Reviewed
Probab=99.45 E-value=4e-11 Score=136.53 Aligned_cols=202 Identities=12% Similarity=0.044 Sum_probs=125.1
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-c-chhhhcCCCCc---EEEeccccC-C
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-E-TTADLLGCVPD---IACYGKLLT-G 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~-~a~e~~gv~PD---ivt~sKgLg-g 693 (863)
-+.+++.| ++..|. +.+.+-+++|.++|++||+++|+||++..|...+. . ......+..+. +-+|||.++ .
T Consensus 169 ~~v~l~~P--~NPTG~-~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~ 245 (389)
T PRK08068 169 KLMYLNYP--NNPTGA-VATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMA 245 (389)
T ss_pred eEEEEECC--CCCCCC-cCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCc
Confidence 35566668 788886 45788899999999999999999999977754442 1 11222232222 237899996 7
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +.+|++++++++++.+.... .....+..+....++.++|. +.+.+.+++++..+..++.+.+. +.+
T Consensus 246 G-lRiG~~~~~~~l~~~l~~~~------~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~r~~~~~~----L~~ 312 (389)
T PRK08068 246 G-WRVAFAVGNESVIEAINLLQ------DHLFVSLFGAIQDAAIEALL--SDQSCVAELVARYESRRNAFISA----CRE 312 (389)
T ss_pred c-ceeEeEecCHHHHHHHHHHH------hhccCCCChHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 7 89999999999999886421 11122333444555555553 23344455555544545544333 333
Q ss_pred CCCeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-------CCEEEEecCCCCcHHHHHHHHH
Q 002941 774 HRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 774 ~p~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~ 844 (863)
++ +.-....| .++.+.+.... .+..++..|++ +||++.|. .+.+|+.. ..+++.+.++++
T Consensus 313 ~g-~~~~~~~g~~~~~v~~~~~~--------~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~al~ 381 (389)
T PRK08068 313 IG-WEVDAPKGSFFAWMPVPKGY--------TSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGL--LTDEERLREAVE 381 (389)
T ss_pred CC-CcccCCCeeEEEEEECCCCC--------CHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEE--cCCHHHHHHHHH
Confidence 43 22234455 45567775321 24678888886 69999873 25788864 456666666666
Q ss_pred HHHH
Q 002941 845 KLYQ 848 (863)
Q Consensus 845 ~L~~ 848 (863)
+|.+
T Consensus 382 ~l~~ 385 (389)
T PRK08068 382 RIGK 385 (389)
T ss_pred HHHH
Confidence 6643
No 184
>PRK08912 hypothetical protein; Provisional
Probab=99.45 E-value=3.7e-11 Score=136.63 Aligned_cols=208 Identities=15% Similarity=0.143 Sum_probs=130.8
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc--hhhhcCCCC-cEE--EeccccC-C
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET--TADLLGCVP-DIA--CYGKLLT-G 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~--a~e~~gv~P-Div--t~sKgLg-g 693 (863)
.+.+++.| ++..|.+. +.+-+++|.++|++||+++|+||++..|-..+..+ ..+..+... +++ +|||.++ .
T Consensus 161 ~~v~l~~p--~NPtG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 237 (387)
T PRK08912 161 KAVLLNNP--LNPAGKVF-PREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLT 237 (387)
T ss_pred eEEEEeCC--CCCcCccc-CHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCc
Confidence 35566667 78888555 67789999999999999999999997653223211 111122222 233 6799998 8
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +.+|++++++++++.+... ....+++.++...+++.++|. ..+++.+++++..+..++.+.+. +..
T Consensus 238 G-lRiG~~~~~~~~~~~l~~~------~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~l~~~----L~~ 304 (387)
T PRK08912 238 G-WKVGFVCAAPPLLRVLAKA------HQFLTFTTPPNLQAAVAYGLG--KPDDYFEGMRADLARSRDRLAAG----LRR 304 (387)
T ss_pred C-ceeEEEecCHHHHHHHHHH------HhhccccCChHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHH----HHh
Confidence 8 8999999999999887641 112345566666666666664 23445555555555555544333 333
Q ss_pred CCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec---------CCEEEEecCCCCcHHHHHHH
Q 002941 774 HRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL---------GNVIYLMCGPCSSPEVCSQL 842 (863)
Q Consensus 774 ~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~---------g~~lr~~ppl~~t~eeid~~ 842 (863)
++ +.-.... |.++.+.+...... ....++++.|+ ++||++.|. .+.+|+.. ..+++.++++
T Consensus 305 ~g-~~~~~~~g~~~l~~~l~~~~~~-----~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~--~~~~~~l~~~ 376 (387)
T PRK08912 305 IG-FPVLPSQGTYFLTVDLAPLGLA-----EDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCF--AKRDATLDEA 376 (387)
T ss_pred CC-CcccCCCcceEEEecccccCCC-----CCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEE--eCCHHHHHHH
Confidence 33 2222333 45666777541100 02456788776 579999873 15788763 4568889999
Q ss_pred HHHHHHHHH
Q 002941 843 LLKLYQRLE 851 (863)
Q Consensus 843 v~~L~~~l~ 851 (863)
+++|.++++
T Consensus 377 l~rl~~~l~ 385 (387)
T PRK08912 377 VERLAAARR 385 (387)
T ss_pred HHHHHHHHh
Confidence 988887664
No 185
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=99.45 E-value=7.5e-11 Score=134.45 Aligned_cols=340 Identities=14% Similarity=0.087 Sum_probs=190.7
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhc-ccccCCCCCChHHHHHHHHHHhhcCCC--CCCeEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKG--WASRAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~p~~--~~~~v~f~~SGSeAvE~ 476 (863)
.++|+..|... ++ ..+.+.+++.+.+... ..+....+..+....+++.+....+.. .-+.|+++++|++|+..
T Consensus 31 ~~i~l~~~~~~--~~--~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~ 106 (391)
T PRK07309 31 GILKLTLGEPD--FT--TPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSA 106 (391)
T ss_pred CeEEcCCCCCC--CC--CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence 56676655432 44 3577888888777542 111111122233444555554332211 01579999999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++.... .| ..|+.-..+|.+..... ...|..
T Consensus 107 ~~~~~~~---------~g------------d~vl~~~p~y~~~~~~~-~~~g~~-------------------------- 138 (391)
T PRK07309 107 SLTAILE---------PG------------DKVLLPAPAYPGYEPIV-NLVGAE-------------------------- 138 (391)
T ss_pred HHHHhcC---------CC------------CEEEEeCCCCcchHHHH-HHcCCE--------------------------
Confidence 8875521 12 56888888888753221 111100
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCCc
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGM 635 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvE-PViqg~gG~ 635 (863)
+..++.... .+. -| .+.+++.++. ..+++.++++. | ++..|.
T Consensus 139 --~~~~~~~~~------------------~~~--~d--------~~~l~~~~~~-----~~~~~~~i~l~~P--~NPtG~ 181 (391)
T PRK07309 139 --IVEIDTTEN------------------DFV--LT--------PEMLEKAILE-----QGDKLKAVILNYP--ANPTGV 181 (391)
T ss_pred --EEEEecCCc------------------CCc--CC--------HHHHHHHhhc-----cCCCeEEEEEECC--CCCCCc
Confidence 001111000 000 01 2345555532 12345555554 7 688886
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCCCCc-EE---EeccccC-CCCCCceeeeccHHHHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD-IA---CYGKLLT-GGVIPLAATLATNAVFD 709 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PD-iv---t~sKgLg-gG~~Pigav~~~~~i~~ 709 (863)
.. +.+-+++|.++|++||+++|+||++..|-..|.. .....+ .+| ++ +|||.++ .| +.+|++++++++++
T Consensus 182 ~~-s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~g~~G-lRvG~~v~~~~~~~ 257 (391)
T PRK07309 182 TY-SREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEY--LPDQTILINGLSKSHAMTG-WRIGLIFAPAEFTA 257 (391)
T ss_pred Cc-CHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHh--ccCCEEEEecChhhccCcc-ceeEEEEeCHHHHH
Confidence 55 5677999999999999999999999877433421 122111 223 33 6799997 77 89999999999998
Q ss_pred hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEE
Q 002941 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCA 788 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~ 788 (863)
.+... ....+.+.++++..++.+.|+.- ......+++..+..++.+ .+.+++++ +...... |.++.
T Consensus 258 ~~~~~------~~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~----~~~l~~~~-~~~~~p~gg~~~~ 324 (391)
T PRK07309 258 QLIKS------HQYLVTAATTMAQFAAVEALTNG--KDDALPMKKEYIKRRDYI----IEKMTDLG-FKIIKPDGAFYIF 324 (391)
T ss_pred HHHHH------HhhcccCCChHHHHHHHHHHhCC--hhHHHHHHHHHHHHHHHH----HHHHHHCC-CeecCCCeeEEEE
Confidence 87641 11223355777777777766521 111222223223333333 33344443 2222333 45555
Q ss_pred EEEccCCcCCCCchHHHHHHHHH-HHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 789 IELQAAGCNAGYGSLYAASLLKK-LREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 789 iel~~~~~~~~~~~~~~~~l~~~-l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+.+.... . .....+++. +.++||.+.|+ ++.+|+... .+++++++++++|.++++++
T Consensus 325 ~~l~~~~-~-----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~i~~l~~~~~~~ 389 (391)
T PRK07309 325 AKIPAGY-N-----QDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYA--ASMETIKEAMKRLKEYMEEH 389 (391)
T ss_pred EECCCCC-C-----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHhh
Confidence 6654321 0 013456765 45789999863 257888643 47889999999998887654
No 186
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=99.45 E-value=4.4e-11 Score=135.87 Aligned_cols=317 Identities=13% Similarity=0.102 Sum_probs=188.0
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
..+|+..+ .+.+| ..|.+.+++.+. .... .++.+...+|.++|++..+-. .+.|++++++++++..+++
T Consensus 53 ~~i~l~~n--~~p~~--~~~~v~~a~~~~-~~~~-----~Yp~~~~~~lr~~ia~~~~~~-~~~I~~t~Ga~~~i~~~~~ 121 (380)
T PLN03026 53 DIVKLDAN--ENPYG--PPPEVLEALGNM-KFPY-----VYPDPESRRLRAALAEDSGLE-SENILVGCGADELIDLLMR 121 (380)
T ss_pred ceEEccCC--CCCCC--CCHHHHHHHHhh-Hhhc-----cCCCCCHHHHHHHHHHHhCcC-hhhEEEcCCHHHHHHHHHH
Confidence 56776653 24565 468888887642 2111 123333567888888887643 3679999999999988876
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.... .| ..|+...-+|......+... | .
T Consensus 122 ~~~~---------~g------------d~Vlv~~P~y~~y~~~~~~~-g------------------------------~ 149 (380)
T PLN03026 122 CVLD---------PG------------DKIIDCPPTFGMYVFDAAVN-G------------------------------A 149 (380)
T ss_pred HhcC---------CC------------CEEEEcCCChHHHHHHHHHc-C------------------------------C
Confidence 5421 12 46888887775332111111 0 0
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..+.+|... .+ ..| .+.+++.+.. .+.-..+|+.| ++..|...+
T Consensus 150 ~~~~v~~~~-----------------~~--~~d--------~~~l~~~~~~------~~~~~v~l~~P--~NPTG~~~~- 193 (380)
T PLN03026 150 EVIKVPRTP-----------------DF--SLD--------VPRIVEAVET------HKPKLLFLTSP--NNPDGSIIS- 193 (380)
T ss_pred EEEEeecCC-----------------CC--CcC--------HHHHHHHHhc------cCCcEEEEeCC--CCCCCCCCC-
Confidence 001111000 00 011 1344444421 12234445555 789998776
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcCC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDS 715 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~~ 715 (863)
.+++.++++.. +++|+||++..|...+... ....-.+.++ +|||.+| .| +.+|++++++++++.+....
T Consensus 194 ---~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~--~~~~~~~~viv~~SfSK~~glaG-lRiGy~~~~~~~i~~l~~~~ 266 (380)
T PLN03026 194 ---DDDLLKILELP-ILVVLDEAYIEFSTQESRM--KWVKKYDNLIVLRTFSKRAGLAG-LRVGYGAFPLSIIEYLWRAK 266 (380)
T ss_pred ---HHHHHHHHhcC-CEEEEECcchhhcCCcchH--HHHHhCCCEEEEecchHhhcCcc-ccceeeecCHHHHHHHHHhc
Confidence 45556666554 8999999998774323221 1111123443 7899997 78 89999999999998876421
Q ss_pred ccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC
Q 002941 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795 (863)
Q Consensus 716 ~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~ 795 (863)
..++.+.++..++.++|+ +.++.+++++..+..++.+. +.+.+.+.+......|.++.+.+....
T Consensus 267 --------~~~~~~~~~q~aa~~aL~---~~~~~~~~~~~~~~~r~~l~----~~L~~~~~~~~~p~~~~f~~~~~~~~~ 331 (380)
T PLN03026 267 --------QPYNVSVAAEVAACAALS---NPKYLEDVKNALVEERERLF----GLLKEVPFLEPYPSDANFILCRVTSGR 331 (380)
T ss_pred --------CCCCCCHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHHH----HHHHHCCCCeECCCCCeEEEEECCCCC
Confidence 235567777888887775 44555555554444455443 334444433223456777777765321
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
...++++.|.++||.+++. .+.+|++ ..++++++.++++|++
T Consensus 332 --------~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis---~~~~~~~~~l~~al~~ 378 (380)
T PLN03026 332 --------DAKKLKEDLAKMGVMVRHYNSKELKGYIRVS---VGKPEHTDALMEALKQ 378 (380)
T ss_pred --------CHHHHHHHHHHCCeEEEECCCCCCCCEEEEe---cCCHHHHHHHHHHHHH
Confidence 1467888999999999874 2678886 3477888888888865
No 187
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=99.45 E-value=4.6e-11 Score=134.08 Aligned_cols=333 Identities=13% Similarity=0.044 Sum_probs=187.5
Q ss_pred EEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC-CCC-eEEEeCChhhHHHHHH
Q 002941 401 QFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIEIAL 478 (863)
Q Consensus 401 ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~-~~~-~v~f~~SGSeAvE~AL 478 (863)
.+|+.+|.. .++ ..|++.+++++.......+..+.+..+....+++.+....+.. ..+ .+++++++++|...++
T Consensus 2 ~~~~~~g~p--~~~--~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~ 77 (350)
T TIGR03537 2 LFDFGTGDP--KEP--TPPFIRKALIDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFP 77 (350)
T ss_pred eEeccCCCC--CCC--CCHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHH
Confidence 456666543 344 3688999988876543222211122234445555554433321 123 7999999999987766
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
.... ..|. ....|+...-+|.+....+...+.
T Consensus 78 ~~~~-----~~g~-------------~~d~Vl~~~p~y~~~~~~~~~~g~------------------------------ 109 (350)
T TIGR03537 78 LVFI-----DPEE-------------DRRRVIFGTPGYPVYERGALFAGG------------------------------ 109 (350)
T ss_pred HHHc-----CCCC-------------CCceEEEcCCCCcchHHHHHhcCC------------------------------
Confidence 5431 1111 014788888888776443322211
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
..+++|... .+.+. -| .+.+++.+.+ +.-+.+|..| ++..|.. .
T Consensus 110 -~~~~v~~~~---------------~~~~~--~d--------~~~l~~~~~~-------~~~~i~i~~p--~NPtG~~-~ 153 (350)
T TIGR03537 110 -EPTAVKLKK---------------EDGFL--LR--------LEKVEKSILE-------ETKIVWINYP--HNPTGAT-A 153 (350)
T ss_pred -EEEEcccCc---------------ccCCc--cC--------HHHHHHhhhh-------ccEEEEEeCC--CCCcCcc-c
Confidence 011111000 00000 01 2334444431 2234445556 7888854 5
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhc
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~ 713 (863)
+.+-+++|.++|++||+++|+||++..+ ..+. ......++. +.++ ++||.++ .| +.+|++++++++.+.+..
T Consensus 154 ~~~~~~~l~~~a~~~~~~ii~De~y~~~-~~~~~~~~~~~~~~-~~~i~~~s~SK~~g~~G-lRiG~~~~~~~~~~~~~~ 230 (350)
T TIGR03537 154 PRSYLKETIAMCREHGIILCSDECYTEI-YFGEPPHSALEVGI-ENVLAFHSLSKRSGMTG-YRSGFVAGDEKLISFLRK 230 (350)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecccccc-ccCCCCCchhhcCc-CCEEEEeecccccCCcc-ccceeeecCHHHHHHHHH
Confidence 7888999999999999999999999654 2232 211111221 2233 5799985 56 899999999999888764
Q ss_pred CCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEEEEEc
Q 002941 714 DSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIELQ 792 (863)
Q Consensus 714 ~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~iel~ 792 (863)
. ....+.+.++++.+++.+++. ++++.++.++..+..++.+ .+.+.++.. .-.... |.++.+++.
T Consensus 231 ~------~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~r~~l~~~~~~~----~~~l~~~g~-~~~~~~g~~~~~~~~~ 296 (350)
T TIGR03537 231 L------RANFGVASPDFVQAAAKAAWS---DDNHVLERRKIFKRKRDLF----IEFFNKVGL-EYLYPDATFYLWVKVP 296 (350)
T ss_pred H------HHhhccCCCHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHH----HHHHHHCCC-cccCCCeEEEEEEECC
Confidence 1 112234455566666666654 3444444444444444433 233334432 222333 555667775
Q ss_pred cCCcCCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 793 AAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 793 ~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
... ....+++.|.++||++.|+ .+.+|+. +..+++++++++++|.+
T Consensus 297 ~~~--------~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~--~~~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 297 SGI--------DAKDYALRLLENGIVVAPGENFGSGEEGYVRVA--LVPTLEECEEALRLWER 349 (350)
T ss_pred CCC--------CHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEE--ecCCHHHHHHHHHHHhc
Confidence 421 2467889999999999863 2568885 34678888888888764
No 188
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=99.45 E-value=3.3e-11 Score=142.41 Aligned_cols=347 Identities=11% Similarity=0.061 Sum_probs=192.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~AL 478 (863)
..+++..|.- +.+|..-.+.+++++.+++.....+....+..+....+++.+...-+.+ ..+.|++++++++|+..++
T Consensus 147 ~~i~l~~G~p-~~~~~~~p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~ 225 (517)
T PRK13355 147 HILKLNIGNP-APFGFRTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSM 225 (517)
T ss_pred CeEEecCcCC-CcCCCCCCHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHH
Confidence 4455444321 2344434678999998887643222211122333444555543321111 1357999999999999888
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
+..+. .| ..|+...-+|......+...++..
T Consensus 226 ~~l~~---------~G------------d~Vli~~P~y~~y~~~~~~~g~~~---------------------------- 256 (517)
T PRK13355 226 SALLD---------DG------------DEVLIPSPDYPLWTACVNLAGGTA---------------------------- 256 (517)
T ss_pred HHhCC---------CC------------CEEEEcCCCCcCHHHHHHHCCCEE----------------------------
Confidence 75521 12 569998888877654332221100
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
+.+|-.. ..-|. -| .+.+++.+. +..-+.+|+.| ++..|.+.
T Consensus 257 ---v~~~~~~---------------~~~~~--~d--------~~~l~~~~~-------~~~k~i~i~nP--~NPTG~v~- 298 (517)
T PRK13355 257 ---VHYRCDE---------------QSEWY--PD--------IDDIRSKIT-------SRTKAIVIINP--NNPTGALY- 298 (517)
T ss_pred ---EEeecCc---------------ccCCC--CC--------HHHHHHhcC-------cCceEEEEECC--CCCCCcCc-
Confidence 1111000 00000 11 134444442 23456778889 78899665
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCCCCcE--E---EeccccC-CCCCCceeeec--cHHH--
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDI--A---CYGKLLT-GGVIPLAATLA--TNAV-- 707 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PDi--v---t~sKgLg-gG~~Pigav~~--~~~i-- 707 (863)
+.+.+++|.++|++||+++|+||++..|-..|.. -.... ..||. + +|||.++ .| +.+|++++ ++++
T Consensus 299 ~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~--~~~~~~vi~~~S~SK~~~~~G-~RiG~~i~~~~~~~~~ 375 (517)
T PRK13355 299 PREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIAS--LAPDLFCVTFSGLSKSHMIAG-YRIGWMILSGNKRIAK 375 (517)
T ss_pred CHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHH--hCCCCeEEEEecchhhccCcc-cceEEEEeeCchhhHH
Confidence 6888999999999999999999999877333321 11111 23553 2 3699864 56 89999984 4543
Q ss_pred --HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccce
Q 002941 708 --FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGT 785 (863)
Q Consensus 708 --~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl 785 (863)
++.+.. .....++.+.++..++.++|+-.+ ...+.+.+. +++.+. ++.+.+.+.+.|.+......|.
T Consensus 376 ~~~~~l~~-------~~~~~~~~~~~~q~a~~~aL~~~~--~~~~~~~~~-~~~~~~-r~~l~~~L~~~~g~~~~~p~g~ 444 (517)
T PRK13355 376 DYIEGLNM-------LANMRLCSNVPAQSIVQTALGGHQ--SVKDYLVPG-GRVYEQ-RELVYNALNAIPGISAVKPKAA 444 (517)
T ss_pred HHHHHHHH-------HhcCcCCcChHHHHHHHHHhcCCc--cHHHHHHHH-HHHHHH-HHHHHHHHhcCCCcccCCCCee
Confidence 333321 011224456677777777774211 111222221 111111 1233445556665555667777
Q ss_pred EEEE-EEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 786 LCAI-ELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 786 ~~~i-el~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
|+.+ .+...... .. .....+...|.++||.+.|+ .+.+|++ ++.+++++++++++|.+.+...
T Consensus 445 fy~~~~l~~~~~~--~~-~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris--~~~~~~~l~~a~~rl~~~~~~~ 515 (517)
T PRK13355 445 FYIFPKIDVKKFN--IH-DDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVV--YLPRLEDLEDAMDRLADFFSYY 515 (517)
T ss_pred eEEEeecCcccCC--CC-CHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEE--eCCCHHHHHHHHHHHHHHHHHh
Confidence 6554 55421000 00 01233445677899999873 2578876 4678899999999999988654
No 189
>PRK07683 aminotransferase A; Validated
Probab=99.45 E-value=6.5e-11 Score=134.78 Aligned_cols=337 Identities=11% Similarity=0.011 Sum_probs=187.9
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc-ccCCCCCChHHHHHHHHHHhhcCCC-CCC-eEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~p~~-~~~-~v~f~~SGSeAvE~ 476 (863)
.++|+..|... ++ ..+.+.+++.+.++.... +....+..+...++++.+....+-. ..+ .+++++++++|+..
T Consensus 29 ~~i~l~~~~p~--~~--~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~ 104 (387)
T PRK07683 29 NLISLTIGQPD--FP--TPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDI 104 (387)
T ss_pred CeEEecCCCCC--CC--CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence 45666655322 33 357889999988875321 1111122344455566554332311 124 79999999999998
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++..+. .| ..|+.-..+|.+........+.
T Consensus 105 ~~~~l~~---------~g------------d~Vl~~~p~y~~~~~~~~~~g~---------------------------- 135 (387)
T PRK07683 105 AFRTILE---------PG------------TEVILPAPIYPGYEPIIRLCGA---------------------------- 135 (387)
T ss_pred HHHHhCC---------CC------------CEEEEcCCCccchHHHHHHcCC----------------------------
Confidence 8876521 12 4688877777765332221110
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
..+.+|... +.+. -| .+.+++.+. ...-+.++..| ++..|..
T Consensus 136 ---~~~~~~~~~----------------~~~~--~~--------~~~l~~~~~-------~~~~~i~i~~p--~NPtG~~ 177 (387)
T PRK07683 136 ---KPVFIDTRS----------------TGFR--LT--------AEALENAIT-------EKTRCVVLPYP--SNPTGVT 177 (387)
T ss_pred ---EEEEeecCc----------------ccCC--CC--------HHHHHHhcC-------cCceEEEEeCC--CCCCCcC
Confidence 001111000 0000 01 123444442 12234455666 6888865
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc-CCCCcEE---EeccccC-CCCCCceeeeccHHHHHhh
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL-GCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSF 711 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~-gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l 711 (863)
. +++.+++|.++|+++|+++|+||++..+...+.......+ +....++ +|||.++ .| +.+|++++++++++.+
T Consensus 178 ~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pG-lRiG~i~~~~~l~~~~ 255 (387)
T PRK07683 178 L-SKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTG-WRIGFLFAPSYLAKHI 255 (387)
T ss_pred C-CHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCcc-ceeEEEEcCHHHHHHH
Confidence 4 7788999999999999999999999876322222111112 2222333 6799998 78 8999999999999887
Q ss_pred hcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc-eEEEEE
Q 002941 712 VGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG-TLCAIE 790 (863)
Q Consensus 712 ~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G-l~~~ie 790 (863)
... ......+.+.++..++.+.|+. ...+.+++++..+..++.+.+. +.+.. +.-..+.| .++.+.
T Consensus 256 ~~~------~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~----l~~~~-~~~~~~~~~~~~~~~ 322 (387)
T PRK07683 256 LKV------HQYNVTCASSISQYAALEALTA--GKDDAKMMRHQYKKRRDYVYNR----LISMG-LDVEKPTGAFYLFPS 322 (387)
T ss_pred HHH------HHhccCCCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHH----HHHcC-CcccCCCeeEEEEEe
Confidence 641 1111233456676777666642 1223344444444444433333 33332 22223444 455555
Q ss_pred EccCCcCCCCchHHHHHHHHH-HHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 791 LQAAGCNAGYGSLYAASLLKK-LREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 791 l~~~~~~~~~~~~~~~~l~~~-l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+.... .....++.. +.++||.+.|+ .+.+|+. +..+++++.+++++|.+.++
T Consensus 323 ~~~~~-------~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~--~~~~~~~~~~al~~l~~~l~ 382 (387)
T PRK07683 323 IGHFT-------MSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLS--YAYSIETLKEGLDRLEAFLQ 382 (387)
T ss_pred cccCC-------CCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHHH
Confidence 54311 013345554 56789999873 2678885 45588899999999988775
No 190
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=99.45 E-value=1.2e-10 Score=132.64 Aligned_cols=332 Identities=11% Similarity=0.017 Sum_probs=188.8
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCC-----CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~-----~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAv 474 (863)
.|||..+ .|. -.+.+.+|+.+.+..........+ ..+...++.+.|+++++.. .+.+.|++++++++
T Consensus 19 ~yl~~~~------~~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~-~~~v~~~~~~t~~l 90 (397)
T TIGR01976 19 VFFDNPA------GTQ-IPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNAD-PPEVVFGANATSLT 90 (397)
T ss_pred EEecCCc------cCC-CCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCC-CCeEEEeCCHHHHH
Confidence 5777443 233 468999999998876432110111 1234578889999988743 24699999999988
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccc
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (863)
..++..... . .+ .| .+||..+.+|.+.......... ..+ .
T Consensus 91 ~~~~~~~~~-~---~~--~g------------d~vl~~~~~~~s~~~~~~~~~~---~~g-----------~-------- 130 (397)
T TIGR01976 91 FLLSRAISR-R---WG--PG------------DEVIVTRLDHEANISPWLQAAE---RAG-----------A-------- 130 (397)
T ss_pred HHHHHHHHh-c---CC--CC------------CEEEEcCCchHhHHHHHHHHHH---hcC-----------C--------
Confidence 766654410 0 00 11 4677777665553211101100 000 0
Q ss_pred ccCceeeecCcc-hhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 555 MYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 555 ~~~~~~~~~~P~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
.+..++.+. .+ ..+ .+.+++.+. +++.+|+++-+ .+..
T Consensus 131 ---~~~~~~~~~~~~---------------------~~~--------~~~l~~~i~--------~~~~lv~i~~~-~n~t 169 (397)
T TIGR01976 131 ---KVKWARVDEATG---------------------ELH--------PDDLASLLS--------PRTRLVAVTAA-SNTL 169 (397)
T ss_pred ---EEEEEeccccCC---------------------CcC--------HHHHHHhcC--------CCceEEEEeCC-CCCC
Confidence 000111110 00 001 234555442 23455565554 7888
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCCCCCceeeeccHHHHHhh
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSF 711 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~~~i~~~l 711 (863)
|.+.+ +++|.++|++||+++|+||+|. +|. + ...... ..+|++ ++.|.+| .++|++++++++++.+
T Consensus 170 G~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~-~-~~~~~~--~~~d~~~~s~~K~~g---~~~G~l~~~~~~~~~l 237 (397)
T TIGR01976 170 GSIVD----LAAITELVHAAGALVVVDAVHY-APH-G-LIDVQA--TGADFLTCSAYKFFG---PHMGILWGRPELLMNL 237 (397)
T ss_pred CccCC----HHHHHHHHHHcCCEEEEehhhh-ccc-c-CCCHHH--cCCCEEEEechhhcC---CceEEEEEcHHHHhhC
Confidence 98876 9999999999999999999984 331 1 112222 346877 4579873 4689999999988876
Q ss_pred hcCCccceeecc-----cCCCccHHHHHHHHHHHHHhcChh-------------hHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 712 VGDSKLKALLHG-----HSYSAHALGCAAAAKSIKWFKDPQ-------------TNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 712 ~~~~~~~~~~~~-----~T~~~~pla~AAalAaL~~l~~~~-------------l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
........ ... .+-+.+...+++..++++.+++.+ ..++++++...+.+.+.+ .+.+
T Consensus 238 ~~~~~~~~-~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~L~~ 312 (397)
T TIGR01976 238 PPYKLTFS-YDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLV----GLSD 312 (397)
T ss_pred CCccccCc-cCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHH----HHhc
Confidence 53210000 000 001234556667777777764322 133444444555554433 3344
Q ss_pred CCCeeEec-----ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec----------------CCEEEEecCC
Q 002941 774 HRTVQRVV-----ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----------------GNVIYLMCGP 832 (863)
Q Consensus 774 ~p~v~~vr-----g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~----------------g~~lr~~ppl 832 (863)
.+.+.-+. ..+.++.+.+.... ...+.+.|.++||+++.+ ++.+|+++..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 383 (397)
T TIGR01976 313 LPGVTLYGVARLAARVPTVSFTVHGLP---------PQRVVRRLADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAH 383 (397)
T ss_pred CCCEEEeCCCCccCCCceEEEEeCCcC---------HHHHHHHHHHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeec
Confidence 44332211 14456666554221 456888999999999853 3579999999
Q ss_pred CCcHHHHHHHHHHH
Q 002941 833 CSSPEVCSQLLLKL 846 (863)
Q Consensus 833 ~~t~eeid~~v~~L 846 (863)
.+|++|+++++++|
T Consensus 384 ~~t~~di~~l~~~l 397 (397)
T TIGR01976 384 YNTAEEVDRLLEAL 397 (397)
T ss_pred cCCHHHHHHHHHhC
Confidence 99999999998864
No 191
>PRK08363 alanine aminotransferase; Validated
Probab=99.45 E-value=6.3e-11 Score=135.32 Aligned_cols=346 Identities=10% Similarity=0.020 Sum_probs=191.4
Q ss_pred eEEeeeccccc-ccCCCCCcHHHHHHHHHHHHhccc-ccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHH
Q 002941 400 QQFDACASWWT-QGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~-~~lGh~~~p~V~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~ 476 (863)
.++|+..|.-. ..++ -.+.+.+++.+.+..... .....+..+....+++.+....+.+ ..+.+++++++++|+..
T Consensus 31 ~~i~l~~g~p~~~~~~--p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~ 108 (398)
T PRK08363 31 KVIRLNIGDPVKFDFQ--PPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQL 108 (398)
T ss_pred CeEEEeCCCCCcCCCC--CCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence 56777665543 2455 368899999887754311 1111122233334444443322311 13579999999999998
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
++..... .| ..|++...+|.+....+...+.
T Consensus 109 ~~~~~~~---------~g------------d~Vl~~~p~y~~~~~~~~~~g~---------------------------- 139 (398)
T PRK08363 109 IFGALLD---------PG------------DEILIPGPSYPPYTGLVKFYGG---------------------------- 139 (398)
T ss_pred HHHHhCC---------CC------------CEEEEcCCCCcchHHHHHHcCC----------------------------
Confidence 8875521 12 4688877777665332221111
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
..+.++... .+.+ ..| .+.+++.+. ++.-+.+++.| ++..|..
T Consensus 140 ---~~v~~~~~~---------------~~~~--~~d--------~~~l~~~~~-------~~~~~v~l~~p--~NPtG~~ 182 (398)
T PRK08363 140 ---VPVEYRTIE---------------EEGW--QPD--------IDDIRKKIT-------EKTKAIAVINP--NNPTGAL 182 (398)
T ss_pred ---EEEEecccc---------------ccCC--cCC--------HHHHHhhCC-------cceEEEEEECC--CCCCCcC
Confidence 001110000 0000 001 123444332 22344566677 7888865
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---Eecccc-CCCCCCceeeec--cHHHHHh
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLL-TGGVIPLAATLA--TNAVFDS 710 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgL-ggG~~Pigav~~--~~~i~~~ 710 (863)
. +.+-+++|.++|++||+++|.||++..+-..+.......+.-...++ +|||.+ ..| +.+|++++ ++++++.
T Consensus 183 ~-~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G-lRiG~~~~~~~~~~~~~ 260 (398)
T PRK08363 183 Y-EKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATG-WRLGYIYFVDPEGKLAE 260 (398)
T ss_pred c-CHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCcc-ceEEEEEEeCcHHHHHH
Confidence 5 67789999999999999999999997663333221222222122343 689995 467 89999997 6666655
Q ss_pred hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEE-E
Q 002941 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCA-I 789 (863)
Q Consensus 711 l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~-i 789 (863)
+...-. . ....+++.++++..++.++|.. .+++.+++++..+..++.+ .+.+.+++.+.-....|.++. +
T Consensus 261 l~~~~~--~-~~~~~~~~s~~~q~~~~~~l~~--~~~~l~~~~~~~~~~~~~l----~~~L~~~~~~~~~~p~g~~~~~~ 331 (398)
T PRK08363 261 VREAID--K-LARIRLCPNTPAQFAAIAGLTG--PMDYLEEYMKKLKERRDYI----YKRLNEIPGISTTKPQGAFYIFP 331 (398)
T ss_pred HHHHHH--H-HhcccccCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHH----HHHHhcCCCCEecCCCeEEEEEE
Confidence 432100 0 1112356677777777777752 2344445444444444433 334445554433345565554 4
Q ss_pred EEccCCcCCCCchHHHHHH-HHHHHHCCcEEEecC-------CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASL-LKKLREDGVYMRPLG-------NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l-~~~l~e~GV~~~p~g-------~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.+...... ....+ ...|.++||.+.|+. +.+|++ +..+++++++++++|.+.+.+
T Consensus 332 ~l~~~~~~------~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis--~~~~~~~l~~~l~~l~~~~~~ 394 (398)
T PRK08363 332 RIEEGPWK------DDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLV--FLPPVEILEEAMDRFEEFMRE 394 (398)
T ss_pred EeccCCCC------CHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHH
Confidence 55431000 02234 455678999998732 568876 356789999999999887765
No 192
>PRK12414 putative aminotransferase; Provisional
Probab=99.44 E-value=4.9e-11 Score=135.61 Aligned_cols=334 Identities=13% Similarity=0.069 Sum_probs=189.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc-cccCCCCCChHHHHHHHHHHhhcCCCC--CCeEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKGW--ASRAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~p~~~--~~~v~f~~SGSeAvE~ 476 (863)
.++|+..|.. .++ -.+.+.+++.+.+.+.. .+....+..+....+++.|.+..+... .+.++.+++|++|...
T Consensus 30 ~~i~l~~g~p--~~~--~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~ 105 (384)
T PRK12414 30 DALNLSQGAP--NFA--PDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYA 105 (384)
T ss_pred CeEEcCCCCC--CCC--CCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHH
Confidence 4566665543 344 36889999887765421 111122334556778888877666320 1469999999999998
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++.... .| .+|++..-+|.+........ |
T Consensus 106 ~~~~l~~---------~g------------d~Vlv~~p~y~~~~~~~~~~-g---------------------------- 135 (384)
T PRK12414 106 AISALVH---------PG------------DEVIYFEPSFDSYAPIVRLQ-G---------------------------- 135 (384)
T ss_pred HHHHhcC---------CC------------CEEEEeCCCccchHHHHHHc-C----------------------------
Confidence 8875421 12 56888888876532221111 1
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
...+++|... +.+ .-| .+.+++.+. ++..+.+|+.| ++..|.+
T Consensus 136 --~~~~~v~~~~----------------~~~--~~d--------~~~l~~~l~-------~~~~~v~i~~p--~NPTG~~ 178 (384)
T PRK12414 136 --ATPVAIKLSP----------------EDF--RVN--------WDEVAAAIT-------PRTRMIIVNTP--HNPSATV 178 (384)
T ss_pred --CEEEEEecCc----------------ccc--ccC--------HHHHHhhcC-------cccEEEEEcCC--CCCCCcC
Confidence 0001111000 000 001 133444442 22233445556 7888875
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hh-hhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHh
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TA-DLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDS 710 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~-e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~ 710 (863)
. +++.+++|.++|++||+++|+||++..|...|... .. ...+....++ +|||.++ .| +.+|++++++++++.
T Consensus 179 ~-s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pG-lRiG~~v~~~~l~~~ 256 (384)
T PRK12414 179 F-SAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTG-WRVGYCLAPAELMDE 256 (384)
T ss_pred C-CHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCcc-ceEEEEecCHHHHHH
Confidence 5 67789999999999999999999997653333211 11 1112222333 6899996 78 899999999999888
Q ss_pred hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc-eEEEE
Q 002941 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG-TLCAI 789 (863)
Q Consensus 711 l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G-l~~~i 789 (863)
+..- ....+++.+.++..++.+.|+ ++....++.+..++.++.+ .+.+.+++ +.-....| .++.+
T Consensus 257 l~~~------~~~~~~~~s~~~q~a~~~~l~---~~~~~~~~~~~~~~~r~~l----~~~L~~~g-~~~~~~~gg~~~~~ 322 (384)
T PRK12414 257 IRKV------HQFMVFSADTPMQHAFAEALA---EPASYLGLGAFYQRKRDLL----ARELAGSR-FELLPSEGSFFMLA 322 (384)
T ss_pred HHHH------HhheecCCCcHHHHHHHHHhc---CChHHHHHHHHHHHHHHHH----HHHHHhCC-CeecCCCcceEEEE
Confidence 7641 122356667777777766654 3322223333333333333 33344443 22234445 45445
Q ss_pred EEccCCcCCCCchHHHHHHH-HHHHHCCcEEEec---------CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASLL-KKLREDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l~-~~l~e~GV~~~p~---------g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
.+.... . ....+++ ..|.++||.+.|+ ++.+|++. ..+++++++++++|.+
T Consensus 323 ~~~~~~--~----~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~--~~~~~~~~~~~~rl~~ 383 (384)
T PRK12414 323 RFRHFS--D----ESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSF--SKDDATLVEGARRLCS 383 (384)
T ss_pred cccccC--C----CCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEe--cCCHHHHHHHHHHHhh
Confidence 664310 0 0123444 5566889999873 24688864 4578889998888753
No 193
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=99.44 E-value=5.9e-11 Score=136.25 Aligned_cols=213 Identities=14% Similarity=0.131 Sum_probs=132.2
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCCCCcEE---EeccccC-CCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLLT-GGV 695 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv---t~sKgLg-gG~ 695 (863)
+.++..| ++..|... +.+-+++|.++|++||+++|.||++..|-..+.. .....+.-..+++ +|||.++ .|
T Consensus 180 ~i~~~~p--~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pG- 255 (412)
T PTZ00433 180 ALIMTNP--SNPCGSNF-SRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPG- 255 (412)
T ss_pred EEEEeCC--CCCCCccc-CHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCCC-
Confidence 4455677 78888555 6777999999999999999999999877433321 1111121111233 6799984 67
Q ss_pred CCceeeec------cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHH
Q 002941 696 IPLAATLA------TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQ 769 (863)
Q Consensus 696 ~Pigav~~------~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~ 769 (863)
+.+|++++ .+++++.+... ...+++.++++.+++.+.|.- ..+++.+++++..+..++.+ .+
T Consensus 256 lRlG~~i~~~p~~~~~~~~~~~~~~-------~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~r~~l----~~ 323 (412)
T PTZ00433 256 WRLGWLLLVDPHGNGGDFLDGMKRL-------GMLVCGPCSVVQAALGEALLN-TPQEHLEQIVAKLEEGAMVL----YN 323 (412)
T ss_pred eeEEEEEEeCCcccHHHHHHHHHHH-------hhccCCCChHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHH----HH
Confidence 89999996 24566665431 112356788888888777753 12344555554444444433 33
Q ss_pred HHhcCCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecC-----CEEEEecCCCCcHHHHHHH
Q 002941 770 QISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLG-----NVIYLMCGPCSSPEVCSQL 842 (863)
Q Consensus 770 ~~~~~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g-----~~lr~~ppl~~t~eeid~~ 842 (863)
.+.++..+..+... |.++.+.+...... .. ....+++..|+ ++||.+.|+. +.+|+.. ...+++++++
T Consensus 324 ~L~~~~~~~~~~p~gg~f~~~~l~~~~~~-~~--~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~--~~~~e~l~~a 398 (412)
T PTZ00433 324 HIGECIGLSPTMPRGSMFLMSRLDLEKFR-DI--KSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTI--SRPVEVLREA 398 (412)
T ss_pred HHhcCCCCcccCCCeeEEEEEEechhhcC-CC--CCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEe--cCCHHHHHHH
Confidence 44444333333444 66677777532100 00 01456888887 5799998742 5788764 4568889999
Q ss_pred HHHHHHHHHHHH
Q 002941 843 LLKLYQRLEEFD 854 (863)
Q Consensus 843 v~~L~~~l~~l~ 854 (863)
+++|.++++...
T Consensus 399 l~~l~~~~~~~~ 410 (412)
T PTZ00433 399 VERIKAFCERHK 410 (412)
T ss_pred HHHHHHHHHHhc
Confidence 999988887543
No 194
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=99.44 E-value=5.7e-11 Score=135.18 Aligned_cols=205 Identities=11% Similarity=0.058 Sum_probs=127.0
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc--chhhhcCCC-CcEE---EeccccC-C
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGCV-PDIA---CYGKLLT-G 693 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~--~a~e~~gv~-PDiv---t~sKgLg-g 693 (863)
+.+|+.| ++..|... +.+-+++|.++|++||+++|.||++..|-..+.. -....+.-. +.++ +|||.+| .
T Consensus 168 ~i~l~~p--~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~ 244 (388)
T PRK07366 168 LMVLSYP--HNPTTAIA-PLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMG 244 (388)
T ss_pred EEEEeCC--CCCCCccC-CHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCc
Confidence 4555666 89999655 7888999999999999999999999877433321 111111111 2233 7899996 7
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +.+|++++++++++.+.... ...+++..+..+.++++++. +.+++.+++++..+..++.+.+ .+++
T Consensus 245 G-lRiG~~v~~~~li~~l~~~~------~~~~~~~~~~~~~~a~~~l~--~~~~~l~~~~~~~~~~r~~l~~----~L~~ 311 (388)
T PRK07366 245 G-FRIGFAIGNAQLIQALRQVK------AVVDFNQYRGILNGAIAALT--GPQATVQQTVQIFRQRRDAFIN----ALHQ 311 (388)
T ss_pred c-hhheehcCCHHHHHHHHHHH------hhcccCCCHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 7 89999999999998876411 11122222333444555553 2345555555555555554433 3334
Q ss_pred CCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHH-HHCCcEEEec---C----CEEEEecCCCCcHHHHHHHHHH
Q 002941 774 HRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKL-REDGVYMRPL---G----NVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 774 ~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l-~e~GV~~~p~---g----~~lr~~ppl~~t~eeid~~v~~ 845 (863)
++.......-|+++.+.+...- . ....+++..| .++||++.|+ + +.+|+. ++.+++++++++++
T Consensus 312 ~~~~~~~p~~g~f~~~~~~~~~-~-----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~--~~~~~~~l~~~l~r 383 (388)
T PRK07366 312 IGWPVPLPEATMYVWAKLPEPW-Q-----GNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFA--LVHDPDILEEAVER 383 (388)
T ss_pred CCCcccCCCeeEEEEEECCccc-C-----CCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEE--ecCCHHHHHHHHHH
Confidence 4321122345777778775420 0 0134576666 5779999874 2 568875 34678999999998
Q ss_pred HHHH
Q 002941 846 LYQR 849 (863)
Q Consensus 846 L~~~ 849 (863)
|.+.
T Consensus 384 l~~~ 387 (388)
T PRK07366 384 IAAF 387 (388)
T ss_pred HHHh
Confidence 8764
No 195
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=99.44 E-value=2.6e-11 Score=131.70 Aligned_cols=316 Identities=17% Similarity=0.140 Sum_probs=178.7
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~ 496 (863)
.+|++.+|+.++-.-.... -+..+...+++++++++++. ..++|+.||+.||..||....+ +|
T Consensus 12 ~~~~m~eam~~a~~~~~~~---YG~D~~~~~~e~~~ae~~g~---~a~~Fv~sGT~aN~lal~~~~~---------~~-- 74 (342)
T COG2008 12 PTPEMREALAAANAVGDDV---YGEDPTTNALEQRIAELFGK---EAALFVPSGTQANQLALAAHCQ---------PG-- 74 (342)
T ss_pred CCHHHHHHHHhccccCCCC---CCCCHHHHHHHHHHHHHhCC---ceEEEecCccHHHHHHHHHhcC---------CC--
Confidence 5899999999775321111 12456788999999999984 7899999999999999986632 12
Q ss_pred CCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcccc
Q 002941 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (863)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~ 576 (863)
..||+-+.+ |=.+..+ ++...|.+. ...+..|.
T Consensus 75 ----------~~vi~~~~a-Hi~~~E~---Ga~~~~~~~-----------------------~~~~~~~g---------- 107 (342)
T COG2008 75 ----------ESVICHETA-HIYTDEC---GAPEFFGGG-----------------------QKLPIVPG---------- 107 (342)
T ss_pred ----------CeEEEeccc-cceeccc---CcHHHHcCC-----------------------ceeccCCC----------
Confidence 234444332 3322211 111111100 00000010
Q ss_pred ccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCe
Q 002941 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (863)
Q Consensus 577 ~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gil 656 (863)
++. .+. .+.++..+.. ...+......++.|.- +.++| .++|.++|+.+.++|++||+.
T Consensus 108 --------------~~G-klt---~e~v~~~i~~--~d~~~~~~~~~~~e~~-~te~G-tVy~l~el~~i~~~~k~~~l~ 165 (342)
T COG2008 108 --------------ADG-KLT---PEDVEAAIRP--DDIHHAPTPLAVLENT-ATEGG-TVYPLDELEAISAVCKEHGLP 165 (342)
T ss_pred --------------CCC-CcC---HHHHHHhhcC--CCcccCCCceEEEeec-cCCCc-eecCHHHHHHHHHHHHHhCCc
Confidence 000 000 2445555543 1112334556666664 56777 566899999999999999999
Q ss_pred EEEecccccccccCCcchhhhcC-------CCCcEEEe--ccccCCCCCCceeee-ccHHHHHhhhcCCccceeecccCC
Q 002941 657 VIFDEVFTGFWRLGVETTADLLG-------CVPDIACY--GKLLTGGVIPLAATL-ATNAVFDSFVGDSKLKALLHGHSY 726 (863)
Q Consensus 657 LI~DEV~TGfGRtG~~~a~e~~g-------v~PDivt~--sKgLggG~~Pigav~-~~~~i~~~l~~~~~~~~~~~~~T~ 726 (863)
|.+| |- |..- +.-.+| ---|.++| +|+++ .|.++++ ++.+++..+....+ ..|+-+
T Consensus 166 LHmD----GA-R~~n--A~valg~~~~~~~~~~D~v~~~~tK~g~---~~~gAiv~gn~~~~~~a~~~rK----~~Ggl~ 231 (342)
T COG2008 166 LHMD----GA-RLAN--ALVALGVALKTIKSYVDSVSFCLTKGGG---APVGAIVFGNRDFAKRARRWRK----RAGGLM 231 (342)
T ss_pred eeec----hH-HHHH--HHHHcCCCHHHHHhhCCEEEEecccCCc---ceeeeEEEcCHHHHHHHHHHHH----HhcccH
Confidence 9999 44 4421 222222 23476654 67654 6777775 68888876653211 233334
Q ss_pred CccHHHHHHHHHHHHHhcChhhH-HhHHHH--HHHHHHHHHHHHHHHHhcCCCeeE-ecccceEEEEEEccCCcCCCCch
Q 002941 727 SAHALGCAAAAKSIKWFKDPQTN-HNIIPE--RRILRELWDLELIQQISSHRTVQR-VVALGTLCAIELQAAGCNAGYGS 802 (863)
Q Consensus 727 ~~~pla~AAalAaL~~l~~~~l~-~~l~~~--~~~l~~~l~~~l~~~~~~~p~v~~-vrg~Gl~~~iel~~~~~~~~~~~ 802 (863)
.-.-+-.|+++..|+ +.-|+ ....++ +++|.+ .+...|.+.- ....-.++.+.+.+..
T Consensus 232 ~k~r~laA~~~~~l~---~~~~~~~~~Han~mA~~La~--------~~~~~~G~~~~~~~~tN~vf~~l~~~~------- 293 (342)
T COG2008 232 RKARFLAAQGLYALE---DDVWRLAADHANAMAARLAE--------GLEAKPGVKLAFPVETNMVFVRLPESA------- 293 (342)
T ss_pred hhhhHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHH--------hhhhcCCceeccCCcccEEEEECChHH-------
Confidence 333344444555444 32121 111222 344433 3332332221 1245567777665431
Q ss_pred HHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 803 LYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 803 ~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.........+++.|++..+.+..+||..+..+++++||+++..+++.+
T Consensus 294 i~~l~~~~~~~~~~~~~~~~~~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 294 IEALRLAGALFYRGVLIGAHGEIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred HHHHHhhchhheeeeeccCCCceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 123444556677888777766789999999999999999998887654
No 196
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=99.43 E-value=3.1e-11 Score=134.56 Aligned_cols=283 Identities=12% Similarity=0.063 Sum_probs=174.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
|+.+...+|.++|++..+.. .++|+.+++++++...++++. . . .+|+..+-+|...
T Consensus 37 Yp~~~~~~lr~~ia~~~~~~-~~~I~it~Gs~~~l~~~~~~~-~---------~-------------~~vv~~~P~y~~y 92 (332)
T PRK06425 37 YPEISYTDIEDQIKIYTQGL-KIKVLIGPGLTHFIYRLLSYI-N---------V-------------GNIIIVEPNFNEY 92 (332)
T ss_pred CcCcCHHHHHHHHHHHhCCC-cceEEECCCHHHHHHHHHHHh-C---------C-------------CcEEEeCCChHHH
Confidence 45566789999999988754 468999999999988877532 1 1 2477778887776
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
...+...+. ..+++|... + ..|
T Consensus 93 ~~~~~~~G~-------------------------------~v~~vp~~~------------------~--~~~------- 114 (332)
T PRK06425 93 KGYAFTHGI-------------------------------RISALPFNL------------------I--NNN------- 114 (332)
T ss_pred HHHHHHcCC-------------------------------eEEEEeCCc------------------c--cCc-------
Confidence 444333211 111122000 0 001
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
. +.++. .+.-+.+++.| ++..|... +.+.+++|.++|++||+++|.||++..|...+..-.....+
T Consensus 115 -~----~~l~~------~~~k~v~l~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~ 180 (332)
T PRK06425 115 -P----EILNN------YNFDLIFIVSP--DNPLGNLI-SRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNR 180 (332)
T ss_pred -H----HHHhh------cCCCEEEEeCC--CCCcCCcc-CHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhc
Confidence 0 12221 12235567788 78999654 77889999999999999999999998874323111112222
Q ss_pred CCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHH
Q 002941 680 CVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (863)
Q Consensus 680 v~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~ 755 (863)
-.+.++ +|||.++ .| +.+|++++++++++.+... ...+..+.+++++ +.....+.+.+++++.
T Consensus 181 ~~~~vi~~~SfSK~~~l~G-lRiGy~v~~~~li~~l~~~--------~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~ 247 (332)
T PRK06425 181 SYGNVIIGRSLTKILGIPS-LRIGYIATDDYNMKISRKI--------TEPWSVCDPAIDF----IRSIDLDYVAKHSLDI 247 (332)
T ss_pred cCCCEEEEeecHHhcCCch-hhheeeecCHHHHHHHHHc--------CCCCccCHHHHHH----HHHhhhHHHHHHHHHH
Confidence 224444 7899998 88 8999999999999988641 1223333333222 2211122233344444
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-------CEEE
Q 002941 756 RRILRELWDLELIQQISSHRTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-------NVIY 827 (863)
Q Consensus 756 ~~~l~~~l~~~l~~~~~~~p~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-------~~lr 827 (863)
.+..++.+ .+.+.+++ +..+ ...|.++.+.+. . +.++++.|.++||.++|.. +.+|
T Consensus 248 ~~~~r~~l----~~~L~~~g-~~~~~~~~g~f~~~~~~--~---------~~~~~~~l~~~gi~v~~~~~f~~~~~~~iR 311 (332)
T PRK06425 248 MENERSYL----INNLEAMG-FRAAGDPSANFITFMIP--D---------AHDFYSYLLKNGILVRLLDDYECLGEQYIR 311 (332)
T ss_pred HHHHHHHH----HHHHHHCC-CEECCCCCceEEEEEcC--C---------HHHHHHHHHHCCeEEEECCCCCCCCCCEEE
Confidence 44444433 33344443 2222 356778777764 2 4578889999999998741 4788
Q ss_pred EecCCCCcHHHHHHHHHHHHHHH
Q 002941 828 LMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 828 ~~ppl~~t~eeid~~v~~L~~~l 850 (863)
++ ..++++.+.++++|++.+
T Consensus 312 is---~~~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 312 IA---IRRRSFNIKLVNALRNFL 331 (332)
T ss_pred EE---eCCHHHHHHHHHHHHHHh
Confidence 86 567889999999998764
No 197
>PRK06107 aspartate aminotransferase; Provisional
Probab=99.43 E-value=9.2e-11 Score=134.23 Aligned_cols=348 Identities=11% Similarity=0.018 Sum_probs=196.9
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc-cccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~A 477 (863)
+.+|+..|.. .++ .+|.+.+++.+.+++.. .+....+..+....+++.+.+..+.. ..+.+.+++++++|+..+
T Consensus 34 ~~i~l~~g~p--~~~--~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~ 109 (402)
T PRK06107 34 SIVDLTVGEP--DFD--TPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLA 109 (402)
T ss_pred CEEEcCCCCC--CCC--CCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHH
Confidence 4555554432 233 36889999998886422 11112233355667777777655531 135799999999999998
Q ss_pred HHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 478 LklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
++.... .| ..|+..+.+|.+.........+.
T Consensus 110 ~~~~~~---------~g------------d~vl~~~p~y~~y~~~~~~~~~~---------------------------- 140 (402)
T PRK06107 110 LMATLE---------AG------------DEVIIPAPYWVSYPDMVLANDGT---------------------------- 140 (402)
T ss_pred HHHhcC---------CC------------CEEEEecCCCcCHHHHHHHcCCE----------------------------
Confidence 864310 12 46777777666543221111000
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
...++.+... -|. -+ .+.+++.+. ++..+.++..| ++..|. +
T Consensus 141 -~~~v~~~~~~-----------------~~~--~~--------~~~l~~~~~-------~~~~~v~l~~p--~NPtG~-~ 182 (402)
T PRK06107 141 -PVIVACPEEQ-----------------GFK--LT--------PEALEAAIT-------PRTRWLILNAP--SNPTGA-V 182 (402)
T ss_pred -EEEecCCccc-----------------CCC--CC--------HHHHHhhcC-------cCceEEEEECC--CCCCCc-C
Confidence 0001111000 000 01 133444442 23345566667 678884 5
Q ss_pred CCHHHHHHHHHHHHHc-CCeEEEecccccccccCCc-chhhhc--CCCCcEE---EeccccC-CCCCCceeeeccHHHHH
Q 002941 638 VDPLFQRILVKECQNR-KIPVIFDEVFTGFWRLGVE-TTADLL--GCVPDIA---CYGKLLT-GGVIPLAATLATNAVFD 709 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~-gilLI~DEV~TGfGRtG~~-~a~e~~--gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~ 709 (863)
.+.+-++++.++|++| |+++|+||++..+...+.. ...... +....++ .|||.++ .| +.+|++++++++.+
T Consensus 183 ~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG-lRiG~~~~~~~~~~ 261 (402)
T PRK06107 183 YSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTG-WRIGYAAGPADLIA 261 (402)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcc-cceeeeecCHHHHH
Confidence 5788899999999998 9999999999766433421 111111 1223455 4589997 78 89999999999999
Q ss_pred hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEE
Q 002941 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCA 788 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~ 788 (863)
.+... ....+.+.+.++.+++.+.|+- .+.+.++..+..+..++.+ .+.+++++.+...... |.++.
T Consensus 262 ~~~~~------~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~----~~~L~~~~g~~~~~p~gg~~~~ 329 (402)
T PRK06107 262 AINKL------QSQSSSCPSSISQAAAAAALNG--DQSFVTESVAVYKQRRDYA----LALLNAIPGLSCLVPDGAFYLY 329 (402)
T ss_pred HHHHH------HHhcccCCChHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHH----HHHHhcCCCCcccCCCcceEEe
Confidence 87641 1223456778888888777741 2334444443333333322 3344445444333444 45555
Q ss_pred EEEccC-C--cCCCCchHHHHHHHHH-HHHCCcEEEec---C--CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 789 IELQAA-G--CNAGYGSLYAASLLKK-LREDGVYMRPL---G--NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 789 iel~~~-~--~~~~~~~~~~~~l~~~-l~e~GV~~~p~---g--~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+.+..- + ............++.. +.++||.+.|+ | +.+|++ +..++|++++++++|.+.+.++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis--~~~~~e~l~~~l~~l~~~l~~~ 401 (402)
T PRK06107 330 VNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLS--IATSLETLEEACARIERAVAAL 401 (402)
T ss_pred eecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEE--eCCCHHHHHHHHHHHHHHHHhc
Confidence 665311 0 0000000013445544 45789999875 2 578875 4468999999999998887654
No 198
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=99.43 E-value=1.7e-10 Score=133.02 Aligned_cols=344 Identities=12% Similarity=0.031 Sum_probs=199.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc--CCCCC----ChHHHHHHHHHHhhcCCCCCCeEEEeCChhhH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM--FPENV----YEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~--~~~~~----~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeA 473 (863)
-|||..+ .|- -.+.|.+|+.+.+..+.... ...+. .+...++.++|+++++....+.|+|++++++|
T Consensus 34 iyLd~a~------~~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a 106 (424)
T PLN02855 34 VYLDNAA------TSQ-KPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEA 106 (424)
T ss_pred EEeeCcc------ccC-CCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHH
Confidence 5777533 233 35778889888776553211 01011 12245777888888875312589999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcc
Q 002941 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (863)
Q Consensus 474 vE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (863)
+..+++.. ...... .| .+|++....|++.......+.. .. +.
T Consensus 107 l~~i~~~~-~~~~~~----~g------------d~vl~~~~~~~s~~~~~~~~a~---~~-----------g~------- 148 (424)
T PLN02855 107 INLVAYTW-GLANLK----PG------------DEVILSVAEHHSNIVPWQLVAQ---KT-----------GA------- 148 (424)
T ss_pred HHHHHHHh-hhhcCC----Cc------------CEEEECCCccHHHHHHHHHHHH---Hc-----------CC-------
Confidence 98887642 100000 11 4678777766553211111100 00 00
Q ss_pred cccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
.+..++..... .-| .+.+++.+. + ++.+|++.-+ ++..
T Consensus 149 ----~v~~v~~~~~~---------------------~~~--------~~~l~~~i~-------~-~t~lv~i~~~-~n~t 186 (424)
T PLN02855 149 ----VLKFVGLTPDE---------------------VLD--------VEQLKELLS-------E-KTKLVATHHV-SNVL 186 (424)
T ss_pred ----EEEEEecCCCC---------------------CcC--------HHHHHHHhc-------c-CceEEEEeCc-cccc
Confidence 00111111000 001 234555553 1 3455566655 7888
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCCCCCCceeeeccHHHHHhh
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSF 711 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLggG~~Pigav~~~~~i~~~l 711 (863)
|.+.+ +++|.++|++||+++|+|++| ++|.. ..-.+. ..+|+++ +.| +.|. .-+|++.+++++.+.+
T Consensus 187 G~~~~----~~~I~~l~~~~g~~vivD~a~-~~g~~--~~~~~~--~~~d~~~~s~~K-~~gp-~G~G~l~~~~~~~~~~ 255 (424)
T PLN02855 187 GSILP----VEDIVHWAHAVGAKVLVDACQ-SVPHM--PVDVQT--LGADFLVASSHK-MCGP-TGIGFLWGKSDLLESM 255 (424)
T ss_pred cccCC----HHHHHHHHHHcCCEEEEEhhh-hcCCc--CCCchh--cCCCEEEeeccc-ccCC-CccEEEEEchhhhhcC
Confidence 98887 789999999999999999999 45432 112222 3478875 479 4332 2378899999887765
Q ss_pred hcCC-cc----cee---------eccc-CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002941 712 VGDS-KL----KAL---------LHGH-SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (863)
Q Consensus 712 ~~~~-~~----~~~---------~~~~-T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~ 776 (863)
.... .. ..+ ...+ ..+.+..+.++..++++.+.+.+ .+++.+....+.+.+.+. +++.+.
T Consensus 256 ~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~l~~~l~~~----L~~~~g 330 (424)
T PLN02855 256 PPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIG-MDRIHEYEVELGTYLYEK----LSSVPG 330 (424)
T ss_pred CCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHH----HhcCCC
Confidence 4210 00 000 0001 11245667777888888875543 456666666666655433 334443
Q ss_pred eeEe-------cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec-------------CCEEEEecCCCCc
Q 002941 777 VQRV-------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-------------GNVIYLMCGPCSS 835 (863)
Q Consensus 777 v~~v-------rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-------------g~~lr~~ppl~~t 835 (863)
+.-+ ..++.++.+.+.... ...+.+.|.++ ||.++.. .+.+|+++....|
T Consensus 331 ~~i~~~~~~~~~~r~~~v~~~~~~~~---------~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt 401 (424)
T PLN02855 331 VRIYGPKPSEGVGRAALCAFNVEGIH---------PTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNT 401 (424)
T ss_pred EEEeCCCcccccCcccEEEEEECCcC---------HHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCC
Confidence 3211 123456777664321 45688888877 9998742 2579999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002941 836 PEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 836 ~eeid~~v~~L~~~l~~l~~ 855 (863)
++||++++++|+++++.+.+
T Consensus 402 ~~di~~l~~~l~~~~~~~~~ 421 (424)
T PLN02855 402 KEEVDAFIHALKDTIAFFSS 421 (424)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999877654
No 199
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=99.43 E-value=7.9e-11 Score=134.41 Aligned_cols=336 Identities=10% Similarity=-0.023 Sum_probs=189.8
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC--CC-CeEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG--WA-SRAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~--~~-~~v~f~~SGSeAvE~ 476 (863)
.++|+..|.. .++ ..+.+.+++.+.+.....+....+..+....+++.+.+..+.. .. +.++.++++++|+..
T Consensus 30 ~~i~l~~~~p--~~~--~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~ 105 (396)
T PRK09147 30 PPISLSIGEP--KHP--TPAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFA 105 (396)
T ss_pred CeEecCCCCC--CCC--CCHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHH
Confidence 6777766442 343 3578888888766543222211222344555666665443411 02 379999999999988
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++.... .| |. ...|++..-+|.+....+...+
T Consensus 106 ~~~~l~~-----~~---~~----------gd~vlv~~P~y~~~~~~~~~~g----------------------------- 138 (396)
T PRK09147 106 FAQTVID-----RD---GP----------GPLVVCPNPFYQIYEGAALLAG----------------------------- 138 (396)
T ss_pred HHHHHcC-----CC---CC----------CCEEEEcCCCccchHHHHHhcC-----------------------------
Confidence 8876521 10 00 1468888888866432221111
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
...+++|-.. ++-|. -| .+.+++.+. .+.-+.+++.| ++..|.+
T Consensus 139 --~~~~~vp~~~---------------~~~~~--~d--------~~~l~~~~~-------~~~k~i~l~nP--~NPTG~~ 182 (396)
T PRK09147 139 --AEPYFLNCDP---------------ANNFA--PD--------FDAVPAEVW-------ARTQLLFVCSP--GNPTGAV 182 (396)
T ss_pred --CEEEEeccCc---------------cccCc--cC--------HHHHHHHHh-------hccEEEEEcCC--CCCcCcc
Confidence 0111122000 00000 01 123443332 12234566677 8999965
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCC--cch-hh---hcCC--CCcEE---Eecccc-CCCCCCceeeecc
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETT-AD---LLGC--VPDIA---CYGKLL-TGGVIPLAATLAT 704 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--~~a-~e---~~gv--~PDiv---t~sKgL-ggG~~Pigav~~~ 704 (863)
. +++.+++|.++|++||+++|.||++..|-..+. ... .. ..+. .+.++ +|||.+ ..| +.+|+++++
T Consensus 183 ~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G-lRiG~~~~~ 260 (396)
T PRK09147 183 L-PLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPG-LRSGFVAGD 260 (396)
T ss_pred C-CHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCcc-ceeeeecCC
Confidence 5 788899999999999999999999977632231 111 11 1111 12233 689975 356 899999999
Q ss_pred HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc
Q 002941 705 NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG 784 (863)
Q Consensus 705 ~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G 784 (863)
+++++.+... ....+++.++++.+++.+.+. .+++..+.++..+..++.+.+. +.++ ........|
T Consensus 261 ~~l~~~~~~~------~~~~~~~~~~~~q~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----L~~~-~~~~~p~~g 326 (396)
T PRK09147 261 AALLKKFLLY------RTYHGCAMPPAVQAASIAAWN---DEAHVRENRALYREKFDAVTPI----LAPV-LDVQLPDAG 326 (396)
T ss_pred HHHHHHHHHH------hhhcccCCCHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHHH----HHHh-cCCCCCCee
Confidence 9999887631 112345667777777777663 3333444444333334433322 2222 101123457
Q ss_pred eEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------------CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 785 TLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 785 l~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------------g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.++.+++. .. ...++..|+ ++||.+.|+ .+.+|+. ++.+++++++++++|.+.+
T Consensus 327 ~f~~~~~~-~~---------~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~--~~~~~~~l~~~l~rl~~~~ 394 (396)
T PRK09147 327 FYLWAKVP-GD---------DTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIA--LVAPLAECVEAAERIVDFC 394 (396)
T ss_pred EEEEEECC-CC---------HHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHh
Confidence 78878875 11 345777775 689999763 1467775 3457888999998888765
No 200
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=99.43 E-value=7.3e-11 Score=132.97 Aligned_cols=322 Identities=15% Similarity=0.107 Sum_probs=189.9
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
..+|+.. +.+.++ -.|.+.+|+.+.+..+.. |..+...+|.+.|+++.+-+ .+.+++++++++++..+++
T Consensus 23 ~~i~l~~--~~n~~~--~~~~~~~a~~~~~~~~~~-----Y~~~~~~~Lr~aia~~~~v~-~~~I~it~G~~~~i~~~~~ 92 (360)
T PRK07392 23 AILDFSA--SINPLG--PPESVIAAIQSALSALRH-----YPDPDYRELRLALAQHHQLP-PEWILPGNGAAELLTWAGR 92 (360)
T ss_pred cEEEeCC--cCCCCC--CCHHHHHHHHHHHHHhhc-----CCCcCHHHHHHHHHHHhCcC-hhhEEECCCHHHHHHHHHH
Confidence 4667664 234566 468999998887765322 22222346667777766433 3679999999998887766
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.. . .| ..|++..-+|.+....+...+.
T Consensus 93 ~l-~---------~g------------~~vlv~~P~y~~~~~~~~~~g~------------------------------- 119 (360)
T PRK07392 93 EL-A---------QL------------RAVYLITPAFGDYRRALRAFGA------------------------------- 119 (360)
T ss_pred Hh-C---------CC------------CeEEEECCCcHHHHHHHHHcCC-------------------------------
Confidence 43 1 11 4688888888776443322211
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..+++|... +..+. .+..+ .+.+++. .......+++.| ++..|.+.+
T Consensus 120 ~~~~v~~~~---------------~~~~~--~~~~~-----~~~~~~~--------~~~~~~~~l~nP--~NPTG~~~~- 166 (360)
T PRK07392 120 TVKELPLPL---------------DQPSP--GLTLR-----LQTLPPQ--------LTPNDGLLLNNP--HNPTGKLWS- 166 (360)
T ss_pred eEEEEeccc---------------ccCCc--ccccC-----HHHHHHh--------ccCCCEEEEeCC--CCCCCCCcC-
Confidence 011111000 00000 00000 1112211 123456677888 899998776
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcch-hhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a-~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~ 714 (863)
.++|.++++++++ +|+||++..|...+..-. ....+-.+.++ +|||.++ .| +++|++++++++++.+...
T Consensus 167 ---~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~G-lRiG~~v~~~~~~~~~~~~ 241 (360)
T PRK07392 167 ---REAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPG-LRLGYAIAHPDRLQRWQQW 241 (360)
T ss_pred ---HHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCc-hheeeeeCCHHHHHHHHhh
Confidence 4567888999985 666999998854443111 11222234444 6799998 88 8999999999999887641
Q ss_pred CccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccC
Q 002941 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (863)
Q Consensus 715 ~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~ 794 (863)
...++.+.+++.++.+.|+ +..+.+++++..+..++.+ .+.+.+.+.+....+.|.++.+.+..+
T Consensus 242 --------~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l----~~~L~~~~~~~~~~~~~~fl~~~~~~~ 306 (360)
T PRK07392 242 --------RDPWPVNGLAAAAAIAALA---DRDFQQQTWAWLPPAREAL----FQGLASLPGLTPLPSAANFLLVQSQGS 306 (360)
T ss_pred --------CCCCCCCHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHH----HHHHHhCCCcEECCCCCCEEEEEcCCC
Confidence 1245678888888887775 4555555554444444433 344445554433445677777766421
Q ss_pred CcCCCCchHHHHHHHHHH-HHCCcEEEecC-------CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKL-REDGVYMRPLG-------NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l-~e~GV~~~p~g-------~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
..+++..+ .++||++.|+. +.+|+. ..+.++.+++.++|++.+
T Consensus 307 ----------~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~---~~~~~~~~~l~~al~~~~ 357 (360)
T PRK07392 307 ----------ALQLQEKLLQQHRILIRDCLSFPELGDRYFRVA---VRTEAENQRLLEALAAIL 357 (360)
T ss_pred ----------HHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEE---eCCHHHHHHHHHHHHHHh
Confidence 45677765 46799998741 578886 334555566666665544
No 201
>PRK09082 methionine aminotransferase; Validated
Probab=99.42 E-value=5.7e-11 Score=135.18 Aligned_cols=335 Identities=16% Similarity=0.120 Sum_probs=190.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc-ccCCCCCChHHHHHHHHHHhhcCCCC-C-CeEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~p~~~-~-~~v~f~~SGSeAvE~ 476 (863)
..+|+..|.. .++ .+|.+.+++.+.++.... +....+..+....+++.+.+..+... . +.++++++|++|+..
T Consensus 31 ~~i~l~~g~~--~~~--~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~ 106 (386)
T PRK09082 31 GAINLSQGFP--DFD--GPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFA 106 (386)
T ss_pred CEEEecCCCC--CCC--CCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHH
Confidence 4566665532 233 368888888887764211 11122233456678888776655320 1 268999999999998
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++.... .| .+|+...-+|-+.... +...|
T Consensus 107 ~~~~~~~---------~g------------d~Vli~~p~y~~~~~~-~~~~g---------------------------- 136 (386)
T PRK09082 107 AILALVR---------PG------------DEVIVFDPSYDSYAPA-IELAG---------------------------- 136 (386)
T ss_pred HHHHHcC---------CC------------CEEEEeCCCchhhHHH-HHHcC----------------------------
Confidence 8875521 12 4677777666553221 11111
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
...+++|... +.+ .-| .+.+++.+. + ++.+|++... ++..|..
T Consensus 137 --~~~~~~~~~~----------------~~~--~~d--------~~~l~~~~~-------~-~~~~v~l~~p-~NPtG~~ 179 (386)
T PRK09082 137 --GRAVRVALQP----------------PDF--RVD--------WQRFAAAIS-------P-RTRLIILNTP-HNPSGTV 179 (386)
T ss_pred --CEEEEEecCc----------------ccc--cCC--------HHHHHHhcC-------c-cceEEEEeCC-CCCCCcC
Confidence 0011111000 000 001 133444442 1 3444555443 7888865
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc--chhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHh
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDS 710 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~--~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~ 710 (863)
. +++-+++|.++|++||+++|+||++..+-..+.. ......+..+.++ +|||.++ .| +.+|++++++++++.
T Consensus 180 ~-~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~iv~~~~l~~~ 257 (386)
T PRK09082 180 W-SAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTG-WKVGYCVAPAALSAE 257 (386)
T ss_pred C-CHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchh-hhhhhhhCCHHHHHH
Confidence 5 6778999999999999999999999765332321 1112223333333 6799996 67 899999999999988
Q ss_pred hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc-cceEEEE
Q 002941 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-LGTLCAI 789 (863)
Q Consensus 711 l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-~Gl~~~i 789 (863)
+... .....++.+++++.++.+.|+. .+++.+++++..+..++.+.+. +.++. +..... -|.++.+
T Consensus 258 ~~~~------~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~----L~~~~-~~~~~~~g~~~~~~ 324 (386)
T PRK09082 258 FRKV------HQYNTFTVNTPAQLALADYLRA--EPEHYLELPAFYQAKRDRFRAA----LANSR-FKLLPCEGTYFQLV 324 (386)
T ss_pred HHHH------HhhhcCCCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHH----HHhCC-CcccCCCeeEEEEE
Confidence 7642 1223456677777766655542 3444445544444444444333 33332 222223 3556667
Q ss_pred EEccCCcCCCCchHHHHHHHHHH-HHCCcEEEecC---------CEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASLLKKL-REDGVYMRPLG---------NVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l~~~l-~e~GV~~~p~g---------~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
.+.+.. . ....+++..| .++||++.|.. +.+|+.. ..+++++++.+++|.+
T Consensus 325 ~~~~~~---~---~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~--~~~~~~l~~~~~rl~~ 385 (386)
T PRK09082 325 DYSAIS---D---LDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCF--AKQEETLDAAAERLCQ 385 (386)
T ss_pred eccccC---C---CCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEe--cCCHHHHHHHHHHHhh
Confidence 775310 0 0245677766 57899997631 4688864 4578888888888754
No 202
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=99.42 E-value=1.7e-10 Score=131.94 Aligned_cols=337 Identities=12% Similarity=0.035 Sum_probs=188.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCC-------ChHHHHHHHHHHhhcCCCCCCeEEEeCChhh
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-------YEPALECAELLLQGVGKGWASRAYFSDNGST 472 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~-------~~~~~eLae~L~~~~p~~~~~~v~f~~SGSe 472 (863)
-|||..+ .+- -++.|.+|+.+.+....... .... .+...++.++|+++++.+ .+.++|+++|++
T Consensus 5 ~yld~aa------~~~-~~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~~~g~t~ 75 (402)
T TIGR02006 5 IYLDYAA------TTP-VDPRVAEKMMPYLTEKFGNP-ASRSHSFGWEAEEAVENARNQVAELIGAD-SREIVFTSGATE 75 (402)
T ss_pred EEeeCCc------CCC-CCHHHHHHHHHHHHhcCCCC-ChhhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHH
Confidence 6888654 222 47899999988775432111 1011 133556678888888753 358999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCc
Q 002941 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (863)
Q Consensus 473 AvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (863)
|+..+++... .+.. ++ ..+||+... .|.+...+...... .+ .
T Consensus 76 a~~~~l~~l~-~~~~------~~----------g~~Vi~~~~-~h~s~~~~~~~~~~---~g-----------~------ 117 (402)
T TIGR02006 76 SNNLAIKGIA-HFYK------SK----------GNHIITSKT-EHKAVLDTCRYLER---EG-----------F------ 117 (402)
T ss_pred HHHHHHHHHH-Hhhc------CC----------CCEEEECCC-ccHHHHHHHHHHHh---cC-----------C------
Confidence 9999998763 2211 10 145655554 45543333211000 00 0
Q ss_pred ccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 002941 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (863)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~ 632 (863)
.+..++..... ..| .+.+++.+. +++.+|++..+ ++.
T Consensus 118 -----~v~~v~~~~~~---------------------~~d--------~~~l~~~l~--------~~~~lv~v~~~-~n~ 154 (402)
T TIGR02006 118 -----EVTYLPPKSNG---------------------LID--------LEELKAAIR--------DDTILVSIMHV-NNE 154 (402)
T ss_pred -----EEEEEccCCCC---------------------cCC--------HHHHHHhcC--------CCCEEEEEECC-CcC
Confidence 00111111000 001 133444442 23567777776 888
Q ss_pred CCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHh
Q 002941 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDS 710 (863)
Q Consensus 633 gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~ 710 (863)
.|...+ +++|.++|++||+++++|++|+ +|... ++..+..+|++++| |.+| . ..+|+++++++....
T Consensus 155 tG~~~~----~~~I~~l~~~~g~~livD~a~a-~g~~~----~~~~~~~~D~~~~s~~K~~g-p-~G~G~l~~~~~~~~~ 223 (402)
T TIGR02006 155 IGVIQD----IAAIGEICRERKVFFHVDAAQS-VGKIP----INVNELKVDLMSISGHKIYG-P-KGIGALYVRRKPRVR 223 (402)
T ss_pred ceeccc----HHHHHHHHHHcCCEEEEEcchh-cCCcc----cCccccCCCEEEEehhhhcC-C-CceEEEEEccCCCCC
Confidence 998876 8999999999999999999994 54331 12224568999998 9654 2 347888888764443
Q ss_pred hhcCCccceeecc-cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-----cccc
Q 002941 711 FVGDSKLKALLHG-HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-----VALG 784 (863)
Q Consensus 711 l~~~~~~~~~~~~-~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-----rg~G 784 (863)
+............ ...+.+..++++..++++.+++ + .+...+..+.+.+.+.+. ++..+.+.-. +..+
T Consensus 224 ~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~-~-~~~~~~~~~~l~~~l~~~----l~~~~~v~~~~~~~~~~p~ 297 (402)
T TIGR02006 224 LEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKE-E-MAQDTAHVLALRDRLLNG----IKSIEEVYLNGDLEHRVPG 297 (402)
T ss_pred CCceecCCCccCCccCCCccHHHHHHHHHHHHHHHH-h-HHHHHHHHHHHHHHHHHH----HhcCCCEEEeCCccccCCC
Confidence 3210000000001 1123456667777788888754 2 445555666666655443 3444433211 1111
Q ss_pred eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe------------------------cCCEEEEecCCCCcHHHHH
Q 002941 785 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP------------------------LGNVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 785 l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p------------------------~g~~lr~~ppl~~t~eeid 840 (863)
.+.+.|.... ...+...+ +|+.++. .+..+|+++...+|++|||
T Consensus 298 -~~~v~f~~~~---------~~~~~~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid 365 (402)
T TIGR02006 298 -NLNVSFNYVE---------GESLIMAL--KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEID 365 (402)
T ss_pred -eEEEEEeCcC---------HHHHHHhc--CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHH
Confidence 1123333211 12233332 3443321 1367899999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 002941 841 QLLLKLYQRLEEFDK 855 (863)
Q Consensus 841 ~~v~~L~~~l~~l~~ 855 (863)
++++.|.++++.++.
T Consensus 366 ~l~~~l~~~~~~~~~ 380 (402)
T TIGR02006 366 YAVKLVKSAIDKLRE 380 (402)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998877643
No 203
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.42 E-value=6.2e-11 Score=133.58 Aligned_cols=211 Identities=14% Similarity=0.101 Sum_probs=118.8
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVI 696 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~ 696 (863)
++.+|++.-. .+..|...+ +++|.++|++||+++|+||++. +|.. .+....+| .|++ +++|.++++ .
T Consensus 139 ~~~lv~l~~p-~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~--~~~~~~~~--~d~~~~s~~K~l~~~-~ 207 (361)
T cd06452 139 PPALALLTHV-DGNYGNLHD----AKKIAKVCHEYGVPLLLNGAYT-VGRM--PVSGKELG--ADFIVGSGHKSMAAS-A 207 (361)
T ss_pred CceEEEEECC-CCCCeeecc----HHHHHHHHHHcCCeEEEECCcc-cCCc--CCCHHHcC--CCEEEecCCccccCC-C
Confidence 3445555443 677786654 8899999999999999999994 4432 23333444 3655 568999877 5
Q ss_pred CceeeeccHHHHHhhhcCCccce----eecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 697 PLAATLATNAVFDSFVGDSKLKA----LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~----~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
++|++++++++++.+........ ...+.| .++..+++++++++.+.+ ..+.+.+..+ ..+ .+.+.++
T Consensus 208 ~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~al~~~~~--~~~~~~~~~~-~~~----~l~~~L~ 278 (361)
T cd06452 208 PIGVLATTEEWADIVFRTSQMFKIKEVELLGCT--LRGAPLVTLMASFPHVKE--RVKRWDEEVE-KAR----WFVAELE 278 (361)
T ss_pred CeEEEEECHHHHHHHhccccccccceeeeeccc--cCchHHHHHHHHHHHHHH--HHHHHHHHHH-HHH----HHHHHHh
Confidence 89999999999998754221100 011112 122345555666665421 1122211111 112 2234445
Q ss_pred cCCCeeEe---cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--CEEEEecCCCCcHHHHHHHHHHHH
Q 002941 773 SHRTVQRV---VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLY 847 (863)
Q Consensus 773 ~~p~v~~v---rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--~~lr~~ppl~~t~eeid~~v~~L~ 847 (863)
+.+.+.-+ .+...++.++...-............++.+.|+++||+....+ +.+|+. .+-.++|+++.++++|+
T Consensus 279 ~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~ri~-~~g~~~e~~~~l~~al~ 357 (361)
T cd06452 279 KIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHGIKPGLTRYFKLS-TYGLTWEQVEYVVDAFK 357 (361)
T ss_pred cCCCeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHHcCceEEcCCCceEEEEE-ecCCCHHHHHHHHHHHH
Confidence 55433221 2334455555431000000000113468899999999975433 556665 34579999999999998
Q ss_pred HHH
Q 002941 848 QRL 850 (863)
Q Consensus 848 ~~l 850 (863)
+++
T Consensus 358 ~~~ 360 (361)
T cd06452 358 EIA 360 (361)
T ss_pred HHh
Confidence 653
No 204
>PRK06290 aspartate aminotransferase; Provisional
Probab=99.42 E-value=9.3e-11 Score=134.57 Aligned_cols=215 Identities=13% Similarity=0.130 Sum_probs=130.9
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchh-hhcCCC-CcEE--EeccccC-CCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCV-PDIA--CYGKLLT-GGV 695 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~-e~~gv~-PDiv--t~sKgLg-gG~ 695 (863)
+.+++.| ++..|.+. +.+-+++|.++|++||++||.||++..+-..+..-.+ +..+.. .+|+ +|||.++ .|
T Consensus 182 ~i~l~nP--~NPTG~v~-s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~G- 257 (410)
T PRK06290 182 LLYLNYP--NNPTGAVA-TKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTG- 257 (410)
T ss_pred EEEEECC--CCCCCcCC-CHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCch-
Confidence 4444558 79999655 7888999999999999999999999766322321111 111111 1233 7899996 67
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+.+|++++++++++.+... ....+.+.+.++.+++.++|+ ++++.+++++..+..++.+. +.+.+++
T Consensus 258 lRiG~ii~~~~l~~~l~~~------~~~~~~~~~~~~q~aa~~~l~---~~~~~~~~~~~~~~~~~~l~----~~L~~~g 324 (410)
T PRK06290 258 WRLAFVVGNELIVKAFATV------KDNNDSGQFIAIQKAGIYALD---HPEITEKIREKYSRRLDKLV----KILNEVG 324 (410)
T ss_pred hheEeEEeCHHHHHHHHHH------HhccccCCcHHHHHHHHHHhh---CcHHHHHHHHHHHHHHHHHH----HHHHhCC
Confidence 8999999999999887641 111223334456666666664 44455555444444444333 3334443
Q ss_pred CeeEecccce-EEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEE-Eec---CCEEEEecCC-CCcHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGT-LCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM-RPL---GNVIYLMCGP-CSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 776 ~v~~vrg~Gl-~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~-~p~---g~~lr~~ppl-~~t~eeid~~v~~L~~~ 849 (863)
+......|. ++.+.+.+.. ..........++++.|+++|+++ .|. ++.+|++... ..++|+.++++++|.+.
T Consensus 325 -~~~~~p~g~f~l~v~lp~~~-~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~~~~~~~~~~~~~~~~~l~~~ 402 (410)
T PRK06290 325 -FKAEMPGGTFYLYVKAPKGT-KSGIKFENAEEFSQYLIKEKLISTVPWDDAGHFLRFSVTFEAKDEEEEDRILEEIKRR 402 (410)
T ss_pred -CeecCCCeeeEEEEECCCcc-ccCCCCCCHHHHHHHHHHhCCEEEECCccccCeEEEEEEcccccccchhHHHHHHHHH
Confidence 222334444 4456665321 00000012567899999886544 453 3678886443 24889999999999999
Q ss_pred HHHHH
Q 002941 850 LEEFD 854 (863)
Q Consensus 850 l~~l~ 854 (863)
|..++
T Consensus 403 ~~~~~ 407 (410)
T PRK06290 403 LSDVE 407 (410)
T ss_pred Hhhcc
Confidence 87764
No 205
>PRK02948 cysteine desulfurase; Provisional
Probab=99.42 E-value=4.8e-11 Score=135.35 Aligned_cols=336 Identities=10% Similarity=0.058 Sum_probs=191.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCC-----CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~-----~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAv 474 (863)
-|||..+ .|. -.+.+.+|+.+.++.......... ..+...++.++|+++++.+ .+.++|++++++|+
T Consensus 2 ~yld~a~------~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~i~~~~g~t~a~ 73 (381)
T PRK02948 2 IYLDYAA------TTP-MSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGE-EQGIYFTSGGTESN 73 (381)
T ss_pred EeccCCC------CCC-CCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCcHHHHH
Confidence 4777432 344 468899999887765422111101 1234567778888888743 36899999999999
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccc
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (863)
..+++.+++.+ . +. ...|+. ....|.+.......... . +.
T Consensus 74 ~~~~~~~~~~~----~---~~----------g~~vv~-~~~~h~s~~~~~~~~~~---~-----------g~-------- 113 (381)
T PRK02948 74 YLAIQSLLNAL----P---QN----------KKHIIT-TPMEHASIHSYFQSLES---Q-----------GY-------- 113 (381)
T ss_pred HHHHHHHHHhc----c---CC----------CCEEEE-CCcccHHHHHHHHHHHh---C-----------CC--------
Confidence 99988763211 0 10 134444 44555543332211100 0 00
Q ss_pred ccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 002941 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (863)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG 634 (863)
.+..++..... ..| .+.+++.+. ++...|+++-+ +++.|
T Consensus 114 ---~v~~v~~~~~~---------------------~~d--------~~~l~~~l~--------~~~~lv~~~~~-~n~tG 152 (381)
T PRK02948 114 ---TVTEIPVDKSG---------------------LIR--------LVDLERAIT--------PDTVLASIQHA-NSEIG 152 (381)
T ss_pred ---EEEEEeeCCCC---------------------CCC--------HHHHHHhcC--------CCCEEEEEECC-cCCcE
Confidence 00011110000 011 234554442 13446666655 78899
Q ss_pred ceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCCCCCceeeeccHHH-HHhh
Q 002941 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAV-FDSF 711 (863)
Q Consensus 635 ~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~~~i-~~~l 711 (863)
.+.+ +++|.++|++||+++|+|++| +||..+. ..+.+ ..|++ +++|.+|. .-+|++++++++ +..+
T Consensus 153 ~~~~----~~~I~~l~~~~~~~vivD~~~-~~g~~~~--~~~~~--~~d~~~~s~~K~~gp--~G~G~l~~~~~~~~~~~ 221 (381)
T PRK02948 153 TIQP----IAEIGALLKKYNVLFHSDCVQ-TFGKLPI--DVFEM--GIDSLSVSAHKIYGP--KGVGAVYINPQVRWKPV 221 (381)
T ss_pred eehh----HHHHHHHHHHcCCEEEEEChh-hcccccc--CcccC--CCCEEEecHHhcCCC--CcEEEEEEcCCCCCCCc
Confidence 8876 789999999999999999988 5764422 22233 36777 45796641 126778777764 1111
Q ss_pred hcCCccceeecc-cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC-eeEecc-----cc
Q 002941 712 VGDSKLKALLHG-HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT-VQRVVA-----LG 784 (863)
Q Consensus 712 ~~~~~~~~~~~~-~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~-v~~vrg-----~G 784 (863)
..... .... ..++.|+.+.+++.++++.+.+ ..++..+..+.+++++.+.+ .+.+. +. ..+ ..
T Consensus 222 ~~~~~---~~~~~~~~t~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~~l~~~L----~~~~~~v~-~~~~~~~~~~ 291 (381)
T PRK02948 222 FPGTT---HEKGFRPGTVNVPGIAAFLTAAENILK--NMQEESLRFKELRSYFLEQI----QTLPLPIE-VEGHSTSCLP 291 (381)
T ss_pred ccCCC---CCCCcCCCCccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH----hcCCCCEE-EeCCCccCcC
Confidence 10000 0011 2345788889999999987632 24455555666666554443 33331 22 111 11
Q ss_pred eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec------------------------CCEEEEecCCCCcHHHHH
Q 002941 785 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 785 l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~------------------------g~~lr~~ppl~~t~eeid 840 (863)
.++++.+..-. ...+...|.++||.++.+ ++.+|+++...+|++|+|
T Consensus 292 ~i~~~~~~~~~---------~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~ 362 (381)
T PRK02948 292 HIIGVTIKGIE---------GQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQID 362 (381)
T ss_pred CEEEEEeCCCC---------HHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHH
Confidence 23333333211 345666788999999841 258999988889999999
Q ss_pred HHHHHHHHHHHHHH
Q 002941 841 QLLLKLYQRLEEFD 854 (863)
Q Consensus 841 ~~v~~L~~~l~~l~ 854 (863)
+++++|.++++.+-
T Consensus 363 ~l~~~l~~~~~~~~ 376 (381)
T PRK02948 363 TTIHALETIGNQFY 376 (381)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998876543
No 206
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.42 E-value=8.7e-11 Score=133.38 Aligned_cols=200 Identities=13% Similarity=0.082 Sum_probs=123.8
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhc-CCC---CcEEEeccccC-CC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL-GCV---PDIACYGKLLT-GG 694 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~-gv~---PDivt~sKgLg-gG 694 (863)
+.+++.| ++..|.. .+.+-+++|.++|++||+++|+||++..+...+.. .....+ +.. -.+-+|||.+| .|
T Consensus 167 ~v~i~~P--~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~G 243 (383)
T TIGR03540 167 LMFINYP--NNPTGAV-APLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTG 243 (383)
T ss_pred EEEEeCC--CCCcCcc-CCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCcc
Confidence 4444557 7888865 47888999999999999999999999766333321 111111 111 22348899996 67
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+.+|++++++++++.+..- ....+.+.+.++.+++.++|+. .+++.+.+.+..+..++.+ .+.+.++
T Consensus 244 -lRiG~~i~~~~l~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~----~~~L~~~ 310 (383)
T TIGR03540 244 -WRIGMAVGNADLIAGLGKV------KTNVDSGVFQAIQYAAIAALNG--PQDVVKEIRKIYQRRRDLL----LEALKKI 310 (383)
T ss_pred -ceeeEEeCCHHHHHHHHHH------HHhcccCCChHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 8999999999999877631 1112233455666666666642 2344445444444444433 3334444
Q ss_pred CCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHH
Q 002941 775 RTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 775 p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~ 845 (863)
. +..+... |.++.+.+.+.- ....++..|+ ++||.++|. .+.+|+.. ..+++++.+++++
T Consensus 311 ~-~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~--~~~~~~l~~~l~~ 379 (383)
T TIGR03540 311 G-IDVEKPKATFYVWVPVPEGY--------TSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISL--TVPDERLEEAVAR 379 (383)
T ss_pred C-CEecCCCcceEEEEECCCCC--------CHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEe--cCCHHHHHHHHHH
Confidence 3 2223333 556777775321 2456888775 689999874 25788864 4567777777776
Q ss_pred HH
Q 002941 846 LY 847 (863)
Q Consensus 846 L~ 847 (863)
|.
T Consensus 380 l~ 381 (383)
T TIGR03540 380 IK 381 (383)
T ss_pred Hh
Confidence 64
No 207
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=99.42 E-value=2.3e-10 Score=129.30 Aligned_cols=323 Identities=15% Similarity=0.088 Sum_probs=181.6
Q ss_pred cHHHHHHHHHHHHhccc-ccCCCCC-----ChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccc
Q 002941 418 QIELARDMGYTAARFGH-VMFPENV-----YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~-~~~~~~~-----~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~ 491 (863)
.+.+.+|+.+.++++.. .....+. .+...++.+.|+++++....+.++|+++|++|+..++...++
T Consensus 13 p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~-------- 84 (376)
T TIGR01977 13 PDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLLK-------- 84 (376)
T ss_pred CHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhccC--------
Confidence 46899999888877531 1111111 245668888999988743224799999999999887754310
Q ss_pred cccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhh
Q 002941 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (863)
Q Consensus 492 ~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~ 571 (863)
.| .+|++...+|.+. ...+.... ..+ +. .+..++....+
T Consensus 85 -~g------------d~vl~~~~~~~~~-~~~~~~~~-~~~------------g~-----------~~~~v~~~~~~--- 123 (376)
T TIGR01977 85 -EG------------DHVITTPMEHNSV-ARPLECLK-EQI------------GV-----------EITIVKCDNEG--- 123 (376)
T ss_pred -CC------------CEEEECcchhhHH-HHHHHHHH-HHc------------Cc-----------EEEEEecCCCC---
Confidence 11 4677665554332 21110000 000 00 00001110000
Q ss_pred hccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHH
Q 002941 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (863)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~ 651 (863)
..| .+.+++.+. .++.+|++..+ ++..|.+.+ +++|.++|+
T Consensus 124 ------------------~~d--------~~~l~~~~~--------~~~~~v~~~~~-~n~tG~~~~----~~~i~~l~~ 164 (376)
T TIGR01977 124 ------------------LIS--------PERIKRAIK--------TNTKLIVVSHA-SNVTGTILP----IEEIGELAQ 164 (376)
T ss_pred ------------------CcC--------HHHHHHhcC--------CCCeEEEEECC-CCCccccCC----HHHHHHHHH
Confidence 011 234555442 23455666554 788898887 789999999
Q ss_pred HcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHH-HHhhhcCC-cccee-e-----
Q 002941 652 NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAV-FDSFVGDS-KLKAL-L----- 721 (863)
Q Consensus 652 ~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i-~~~l~~~~-~~~~~-~----- 721 (863)
+||+++|+|+++ ++|... +..+. ..+|+++++ |.++|. ...|+++++++. +..+.... ..... +
T Consensus 165 ~~~~~livD~a~-~~g~~~--~~~~~--~~~D~~~~s~~K~l~~p-~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (376)
T TIGR01977 165 ENGIFFILDAAQ-TAGVIP--IDMTE--LAIDMLAFTGHKGLLGP-QGTGGLYIREGIKLKPLKSGGTGSHSALIDQPSE 238 (376)
T ss_pred HcCCEEEEEhhh-ccCccC--CCchh--cCCCEEEecccccccCC-CCceEEEEcCCcCcCceecCCCcccccccccccc
Confidence 999999999999 565442 11222 347988765 988763 235666666553 11111100 00000 0
Q ss_pred --c-ccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-----cccceEEEEEEcc
Q 002941 722 --H-GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-----VALGTLCAIELQA 793 (863)
Q Consensus 722 --~-~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-----rg~Gl~~~iel~~ 793 (863)
. ....+.+...+++..++|+.+.+.+ .+++.++...+.+.+.+. +.+.+.+.-+ ...+.++.+.+..
T Consensus 239 ~~~r~~~~t~~~~~~~a~~~al~~~~~~g-~~~~~~~~~~l~~~~~~~----l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 313 (376)
T TIGR01977 239 LPDRFESGTLNTPGIAGLNAGIKFIEKIG-IANIAKKECMLTEKLLNG----LREINKVKIYGPADPANRVGVVSFTVEG 313 (376)
T ss_pred chhhccCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHH----HhcCCCeEEeCCCCccccCCeEEEEECC
Confidence 0 0011345667777888899886543 234444444555444333 2333322111 1135566666642
Q ss_pred CCcCCCCchHHHHHHHHHHHHC-CcEEEec---------------CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 794 AGCNAGYGSLYAASLLKKLRED-GVYMRPL---------------GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 794 ~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~---------------g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
.. ...+.+.|.++ ||.++.. ...+|+.+...+|++|++.++++|++
T Consensus 314 ~~---------~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 314 ID---------SEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred CC---------HHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 21 45688888887 8888642 26899999999999999999999865
No 208
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=99.42 E-value=4.5e-11 Score=133.58 Aligned_cols=301 Identities=14% Similarity=0.110 Sum_probs=174.6
Q ss_pred HHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccc
Q 002941 423 RDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502 (863)
Q Consensus 423 ~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~ 502 (863)
+|+.+.+..-.+ +..+...++.++|+++++. +.+++++||++|++.+++.. + . + .
T Consensus 3 ~~~~~~~~~~~~-----~~~~~~~~~~~~la~~~~~---~~~~~~~sgt~al~~~l~~l-~-~----~--~--------- 57 (352)
T cd00616 3 EAVEEVLDSGWL-----TLGPKVREFEKAFAEYLGV---KYAVAVSSGTAALHLALRAL-G-I----G--P--------- 57 (352)
T ss_pred HHHHHHHHcCCc-----cCCHHHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHc-C-C----C--C---------
Confidence 445555544322 2356788999999999983 57889999999999999865 1 0 0 1
Q ss_pred cccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcc-hhhhhhccccccccc
Q 002941 503 KCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVEHKDITFC 581 (863)
Q Consensus 503 ~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~-~~~~~~~~~~~~~~~ 581 (863)
..+||....+||+........+.. +..++... .+
T Consensus 58 ---gd~vl~~~~~~~~~~~~~~~~g~~-----------------------------~~~~~~~~~~~------------- 92 (352)
T cd00616 58 ---GDEVIVPSFTFVATANAILLLGAT-----------------------------PVFVDIDPDTY------------- 92 (352)
T ss_pred ---CCEEEeCCcchHHHHHHHHHcCCe-----------------------------EEEEecCCCcC-------------
Confidence 157999999888754322211000 00011110 00
Q ss_pred cccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEec
Q 002941 582 SRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDE 661 (863)
Q Consensus 582 ~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DE 661 (863)
..| .+.+++.+. .++.+|++..+ .|...+ +++|.++|++||+++|+|+
T Consensus 93 --------~~d--------~~~l~~~i~--------~~~~~v~~~~~----~G~~~~----~~~i~~l~~~~~i~li~D~ 140 (352)
T cd00616 93 --------NID--------PELIEAAIT--------PRTKAIIPVHL----YGNPAD----MDAIMAIAKRHGLPVIEDA 140 (352)
T ss_pred --------CcC--------HHHHHHhcC--------cCCeEEEEECC----CCCcCC----HHHHHHHHHHcCCeEEEEC
Confidence 011 133444442 24566666553 344443 8999999999999999999
Q ss_pred ccccccccCCcchhhhcCCCCcEEEec----cccCCCCCCceeeecc-HHHHHhhhc---CCcc------ceeecccCCC
Q 002941 662 VFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFVG---DSKL------KALLHGHSYS 727 (863)
Q Consensus 662 V~TGfGRtG~~~a~e~~gv~PDivt~s----KgLggG~~Pigav~~~-~~i~~~l~~---~~~~------~~~~~~~T~~ 727 (863)
+|+ +|.. +.....|...|+.++| |.+++| +.|+++++ +++++.+.. .... .....+.++.
T Consensus 141 a~~-~g~~---~~~~~~~~~~d~~~~S~~~~K~~~~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (352)
T cd00616 141 AQA-LGAT---YKGRKVGTFGDAGAFSFHPTKNLTTG--EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYR 214 (352)
T ss_pred CCC-CCCe---ECCEEcccCcceeEEcCCCCCCCccc--CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccC
Confidence 995 4432 1112234446888876 999654 45667665 577665431 1100 0012234556
Q ss_pred ccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe---c---ccceEEEEEEccCCcCCCCc
Q 002941 728 AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV---V---ALGTLCAIELQAAGCNAGYG 801 (863)
Q Consensus 728 ~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v---r---g~Gl~~~iel~~~~~~~~~~ 801 (863)
.+++.++.++..++.++ .+.++.+++.+++.+. +.+.+.+.-+ . ....++.+.+....
T Consensus 215 ~~~~~aa~~~~~l~~~~--~~~~~~~~~~~~~~~~--------L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------ 278 (352)
T cd00616 215 LSEIQAAIGLAQLEKLD--EIIARRREIAERYKEL--------LADLPGIRLPDVPPGVKHSYHLYVIRLDPEA------ 278 (352)
T ss_pred cCHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHH--------hcCCCCccCCCCCCCCceeeEEEEEEECCcC------
Confidence 77888888887776552 2334444444444443 2333322111 1 12345566554210
Q ss_pred hHHHHHHHHHHHHCCcEEEec----------------------------CCEEEEecCCCCcHHHHHHHHHHHH
Q 002941 802 SLYAASLLKKLREDGVYMRPL----------------------------GNVIYLMCGPCSSPEVCSQLLLKLY 847 (863)
Q Consensus 802 ~~~~~~l~~~l~e~GV~~~p~----------------------------g~~lr~~ppl~~t~eeid~~v~~L~ 847 (863)
......+.+.|.++||.++.. ...+++.+....|++||+.++++|+
T Consensus 279 ~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 279 GESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred CCCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 012567888999999977521 0467776666789999999998873
No 209
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=99.42 E-value=1.4e-10 Score=130.27 Aligned_cols=307 Identities=14% Similarity=0.128 Sum_probs=182.8
Q ss_pred cCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccc
Q 002941 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (863)
Q Consensus 412 ~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~ 491 (863)
.++ -.+.+.+|+.+.+..... ..+..+...+|.+.++++.+.. .+.++++++.++|+..+++...+
T Consensus 33 ~~~--~p~~~~~a~~~~~~~~~~---~~y~~~~~~~lr~~ia~~~~~~-~~~i~it~G~~~~l~~~~~~l~~-------- 98 (351)
T PRK14807 33 PFE--LPEEVIKNIQEIVKSSQV---NIYPDPTAEKLREELARYCSVV-PTNIFVGNGSDEIIHLIMLAFIN-------- 98 (351)
T ss_pred CCC--CCHHHHHHHHHHhhcCcc---cCCCCccHHHHHHHHHHHhCCC-cccEEEecCHHHHHHHHHHHhcC--------
Confidence 455 368999999887753211 1233344567888888887643 36799998888888877765421
Q ss_pred cccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhh
Q 002941 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (863)
Q Consensus 492 ~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~ 571 (863)
.| .+|++...+|.+....+... |. ..+.+|..
T Consensus 99 -~g------------d~Vlv~~p~y~~~~~~~~~~-g~------------------------------~~~~v~~~---- 130 (351)
T PRK14807 99 -KG------------DVVIYPHPSFAMYSVYSKIA-GA------------------------------VEIPVKLK---- 130 (351)
T ss_pred -CC------------CEEEEeCCChHHHHHHHHHc-CC------------------------------eEEEeecC----
Confidence 12 56888888887543221111 10 00111100
Q ss_pred hccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE-EEEccccccCCCceeCCHHHHHHHHHHH
Q 002941 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA-LIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (863)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAA-vIvEPViqg~gG~~~pp~~fL~~Lrelc 650 (863)
+.+ .-| .+.+++.+.. .++.+ ++..| ++..|...+ .+++.++|
T Consensus 131 -------------~~~--~~d--------~~~l~~~~~~-------~~~k~v~l~~p--~NPtG~~~~----~~~l~~l~ 174 (351)
T PRK14807 131 -------------EDY--TYD--------VGSFIKVIEK-------YQPKLVFLCNP--NNPTGSVIE----REDIIKII 174 (351)
T ss_pred -------------CCC--CCC--------HHHHHHHhhc-------cCCCEEEEeCC--CCCCCCCCC----HHHHHHHH
Confidence 000 001 1344555531 13334 44555 788998776 57778888
Q ss_pred HHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcCCccceeecccCC
Q 002941 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSY 726 (863)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~ 726 (863)
++++.++|+||++..|. |.... ......+.++ +|||.++ .| +++|++++++++++.+.... ..+
T Consensus 175 ~~~~~~~ivDe~y~~~~--~~~~~-~~~~~~~~vi~~~S~SK~~~~~G-lRiG~~v~~~~~~~~~~~~~--------~~~ 242 (351)
T PRK14807 175 EKSRGIVVVDEAYFEFY--GNTIV-DVINEFENLIVLRTLSKAFGLAG-LRVGYAVANENILKYLNLVK--------SPY 242 (351)
T ss_pred HhCCCEEEEeCcchhhc--ccchH-HHhhhCCCEEEEecchHhcccch-hceeeeecCHHHHHHHHHcc--------CCC
Confidence 88889999999997762 32111 1112223444 6799997 78 89999999999999886421 123
Q ss_pred CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHH
Q 002941 727 SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAA 806 (863)
Q Consensus 727 ~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~ 806 (863)
..++++..++.+.|+ +. ..++..+.....++.+ .+.+.+.+.+.-....|.++.+.+.+ ..
T Consensus 243 ~~~~~~q~~~~~~l~---~~-~~~~~~~~~~~~r~~l----~~~l~~~~g~~~~~~~~~~~~i~~~~-----------~~ 303 (351)
T PRK14807 243 NINSLSQVIALKVLR---TG-VLKERVNYILNERERL----IKELSKIPGIKVYPSKTNFILVKFKD-----------AD 303 (351)
T ss_pred CcCHHHHHHHHHHHh---HH-HHHHHHHHHHHHHHHH----HHHHHhCCCcEECcCCccEEEEEcCC-----------HH
Confidence 456777777776665 22 2222222223333333 33344444443334556776676641 45
Q ss_pred HHHHHHHHCCcEEEecC------CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 807 SLLKKLREDGVYMRPLG------NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 807 ~l~~~l~e~GV~~~p~g------~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.+++.|.++||.+++++ +.+|+. ..++++.+.+++.|++.+
T Consensus 304 ~~~~~l~~~gV~v~~~~~~~~~~~~iRis---~~~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 304 YVYQGLLERGILVRDFSKVEGLEGALRIT---VSSCEANDYLINGLKELL 350 (351)
T ss_pred HHHHHHHHCCEEEEECCCCCCCCCeEEEE---cCCHHHHHHHHHHHHHhh
Confidence 68888999999998742 568886 346778888888887643
No 210
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.41 E-value=1.4e-10 Score=133.99 Aligned_cols=350 Identities=13% Similarity=0.051 Sum_probs=191.7
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc--ccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~ 476 (863)
.++++..|--.......-.|++.+|+.++++.... +....+..+....+++.+....+.+ ..+.|++++++++|+..
T Consensus 53 ~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l 132 (430)
T PLN00145 53 PVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEI 132 (430)
T ss_pred CeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHH
Confidence 66776655322211122357889999888765321 1111122334445555554432211 12579999999999998
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++...+ .| .+|+...-+|......+...+..
T Consensus 133 ~~~~l~~---------~G------------d~Vlv~~P~y~~y~~~~~~~g~~--------------------------- 164 (430)
T PLN00145 133 IMSVLAQ---------PG------------ANILLPRPGYPLYEARAVFSGLE--------------------------- 164 (430)
T ss_pred HHHHhcC---------CC------------CEEEEcCCCCccHHHHHHHcCCE---------------------------
Confidence 8876521 12 46888888887743322211100
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
+..++.+.. ..|. -| .+.+++.+. +...+.+++.| ++..|.
T Consensus 165 --~~~~~~~~~-----------------~~~~--~d--------~~~l~~~~~-------~~~~~i~i~~P--~NPtG~- 205 (430)
T PLN00145 165 --VRHFDLLPE-----------------RGWE--VD--------LEGVEALAD-------ENTVAMVIINP--NNPCGS- 205 (430)
T ss_pred --EEEeeCCcc-----------------cCCc--CC--------HHHHHHHhC-------cCceEEEEeCC--CCCCCC-
Confidence 001111000 0000 01 234444442 34567888888 688885
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcCCCCcEE---Eeccc-cCCCCCCceeeec--cHHHHH
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKL-LTGGVIPLAATLA--TNAVFD 709 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PDiv---t~sKg-LggG~~Pigav~~--~~~i~~ 709 (863)
+.+.+.+++|.++|++||+++|+||++..|...+..+ ....++-...++ .|||. +..| +.+|++++ ++.+++
T Consensus 206 v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG-~RlG~iv~~~~~~~~~ 284 (430)
T PLN00145 206 VYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPG-WRLGWIATCDPNGILK 284 (430)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCC-eeEEEEEEecchhhhh
Confidence 5578889999999999999999999998764333211 111122222344 57998 4467 89999987 344332
Q ss_pred ------hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE-ecc
Q 002941 710 ------SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR-VVA 782 (863)
Q Consensus 710 ------~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~-vrg 782 (863)
.+.. . ...+...+.+..+++.+.|+.- .+++.++..+..+..++.+ .+.+.+++.+.. .+.
T Consensus 285 ~~~~~~~~~~------~-~~~~~~~~~~~Q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~----~~~L~~~~g~~~~~~P 352 (430)
T PLN00145 285 ETKVVDSIRN------Y-LNISTDPATFVQGAIPQIIANT-KEEFFTKTLGLLKETADIC----YEKIKEIKCITCPHKP 352 (430)
T ss_pred hhHHHHHHHH------H-hcccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHH----HHHHhcCCCCCCCcCC
Confidence 2221 0 1112233566777776666521 1344444444444434433 444556665543 244
Q ss_pred cc-eEEEEEEccCCcCCCCchHHHHHHHH-HHHHCCcEEEec---C--CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 783 LG-TLCAIELQAAGCNAGYGSLYAASLLK-KLREDGVYMRPL---G--NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 783 ~G-l~~~iel~~~~~~~~~~~~~~~~l~~-~l~e~GV~~~p~---g--~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.| +++.+.+...... ... ....++. .+.++||++.|+ | +.+|++. ..+++++++++++|.+.+.+..
T Consensus 353 ~ga~y~~v~l~~~~~~-~~~--~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~--~~~~~~l~~al~rl~~~~~~~~ 426 (430)
T PLN00145 353 EGSMFVMVKLDLSCLS-GIK--DDMDFCCKLAKEESVVVLPGSALGMKNWLRITF--AIDPPSLEDGLERLKSFCLRHA 426 (430)
T ss_pred CeeeEEEeccChhhcC-CCC--CHHHHHHHHHHhCCEEEeCccccCCCCeEEEEe--CCCHHHHHHHHHHHHHHHHHhc
Confidence 45 4445555421000 000 1344554 445779999884 3 7888864 4578889999999988886654
No 211
>PRK05957 aspartate aminotransferase; Provisional
Probab=99.41 E-value=2.6e-10 Score=129.97 Aligned_cols=208 Identities=15% Similarity=0.168 Sum_probs=130.8
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-ch-hhhcCCCCcE---EEeccccC-CC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TT-ADLLGCVPDI---ACYGKLLT-GG 694 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a-~e~~gv~PDi---vt~sKgLg-gG 694 (863)
+.+++.| ++..|.+. +++-+++|.++|++||+++|+||++..|...+.. .. ....+..+.+ -+|||.++ .|
T Consensus 163 lv~~~~p--~NPtG~~~-~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 239 (389)
T PRK05957 163 AIVTISP--NNPTGVVY-PEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFAS 239 (389)
T ss_pred EEEEeCC--CCCCCcCc-CHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCcc
Confidence 4455556 78888655 6778999999999999999999999877333211 11 1111222233 36899997 77
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+.+|++++++++++.+... ......+.+.++..++..+|+ +.+++.++..+..+..++.+ .+.+.+.
T Consensus 240 -lRiG~~~~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~r~~l----~~~L~~~ 306 (389)
T PRK05957 240 -WRIGYMVIPIHLLEAIKKI------QDTILICPPVVSQYAALGALQ--VGKSYCQQHLPEIAQVRQIL----LKSLGQL 306 (389)
T ss_pred -ceeEEEecCHHHHHHHHHH------HhhcccCCCcHHHHHHHHHHh--CChHHHHHHHHHHHHHHHHH----HHHHHhc
Confidence 8999999999999988641 111223345566666666554 12345555444444444433 3334444
Q ss_pred CCe-eEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHH
Q 002941 775 RTV-QRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 775 p~v-~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~ 844 (863)
+.+ ...... |+++.+++.... ...++++.|+ ++||.+.|+ ++.+|+... ..+++++++.++
T Consensus 307 ~~~~~~~~~~gg~~~~~~~~~~~--------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~-~~~~~~l~~~~~ 377 (389)
T PRK05957 307 QDRCTLHPANGAFYCFLKVNTDL--------NDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYG-ALQKATAKEGIE 377 (389)
T ss_pred CCCccccCCCeeEEEEEeCCCCC--------ChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEe-cCCHHHHHHHHH
Confidence 432 212233 566667775321 2467888887 589999874 246888632 357889999999
Q ss_pred HHHHHHHHH
Q 002941 845 KLYQRLEEF 853 (863)
Q Consensus 845 ~L~~~l~~l 853 (863)
+|.+.++++
T Consensus 378 ~l~~~~~~~ 386 (389)
T PRK05957 378 RLVQGLKTI 386 (389)
T ss_pred HHHHHHHhh
Confidence 998887764
No 212
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=99.41 E-value=9.3e-11 Score=133.22 Aligned_cols=200 Identities=10% Similarity=0.016 Sum_probs=124.0
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc----chhhh-cCCCCcEEEeccccC-CC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE----TTADL-LGCVPDIACYGKLLT-GG 694 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~----~a~e~-~gv~PDivt~sKgLg-gG 694 (863)
+.+++.| ++..|.+. +.+-+++|.++|++||+++|+||++..|...|.. ..... .+..-.+.+|||.+| .|
T Consensus 169 ~v~l~~p--~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 245 (385)
T PRK09276 169 LMFINYP--NNPTGAVA-DLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTG 245 (385)
T ss_pred EEEEeCC--CCCCCCCC-CHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcc
Confidence 4444557 78888654 7888999999999999999999999876332321 11111 111122347899996 67
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+.+|++++++++++.+.... ...+.+.+++...++.++|+. .+.+.+++++..+..++.+.+. ++++
T Consensus 246 -lRiG~~i~~~~l~~~~~~~~------~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~----L~~~ 312 (385)
T PRK09276 246 -WRIGFAVGNADLIAGLGKVK------SNVDSGVFQAIQEAGIAALNG--PQEVVEELRKIYQERRDILVEG----LRKL 312 (385)
T ss_pred -hhheeeeCCHHHHHHHHHHH------hhccCCCCHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHH----HHhC
Confidence 89999999999998876411 111223455566666666642 2445555555555555544333 3333
Q ss_pred CCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHH
Q 002941 775 RTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 775 p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~ 845 (863)
. +.-.... |.++.+.+.... ...+++..|+ ++||++.|+ .+.+|+.. ..+++++.+++++
T Consensus 313 ~-~~~~~~~~~~~~~v~~~~~~--------~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~--~~~~~~l~~~l~~ 381 (385)
T PRK09276 313 G-LEVEPPKATFYVWAPVPKGY--------TSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIAL--TVPDERIEEAVER 381 (385)
T ss_pred C-CcccCCCcceEEEEECCCCC--------CHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEe--CCCHHHHHHHHHH
Confidence 3 2222333 455667765321 2456788876 579999874 25788864 4577777777777
Q ss_pred HH
Q 002941 846 LY 847 (863)
Q Consensus 846 L~ 847 (863)
|.
T Consensus 382 l~ 383 (385)
T PRK09276 382 IK 383 (385)
T ss_pred Hh
Confidence 64
No 213
>PLN02187 rooty/superroot1
Probab=99.41 E-value=1.3e-10 Score=135.31 Aligned_cols=220 Identities=13% Similarity=0.034 Sum_probs=133.7
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcCCCCcEE---Eecccc-C
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLL-T 692 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PDiv---t~sKgL-g 692 (863)
...+.+++.| ++..|.+. +.+.+++|.++|++||+++|.||++..|-..|..+ ....+.-...++ +|||.+ .
T Consensus 204 ~~~~v~i~nP--~NPTG~v~-s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~ 280 (462)
T PLN02187 204 NTVAMVVINP--NNPCGNVY-SHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVV 280 (462)
T ss_pred CcEEEEEeCC--CCCCCCcc-CHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCC
Confidence 4567888999 68888554 78889999999999999999999998863334322 222221112243 679984 4
Q ss_pred CCCCCceeeecc-H-HHH---HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHH
Q 002941 693 GGVIPLAATLAT-N-AVF---DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (863)
Q Consensus 693 gG~~Pigav~~~-~-~i~---~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l 767 (863)
.| +.+|++++. + .++ +.+..- .. ....+.+.+.++.+++.++|+. ..+++.+++++..+..++.+
T Consensus 281 pG-lRiG~~v~~~p~~~~~~~~~~~~~---~~-~~~~~~~~s~~~Q~a~~~~L~~-~~~~~l~~~~~~l~~~r~~l---- 350 (462)
T PLN02187 281 PG-WKIGWIALNDPEGVFETTKVLQSI---KQ-NLDVTPDPATIIQAALPAILEK-ADKNFFAKKNKILKHNVDLV---- 350 (462)
T ss_pred cc-ceeEEEEecCchhHHHHHHHHHHH---HH-hccccCCCCHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHH----
Confidence 67 899999983 3 222 233210 00 1112223467888888887763 12345555555554444444
Q ss_pred HHHHhcCCCeeE-ecc-cceEEEEEEccCCcCCCCchHHHHHH-HHHHHHCCcEEEecC-----CEEEEecCCCCcHHHH
Q 002941 768 IQQISSHRTVQR-VVA-LGTLCAIELQAAGCNAGYGSLYAASL-LKKLREDGVYMRPLG-----NVIYLMCGPCSSPEVC 839 (863)
Q Consensus 768 ~~~~~~~p~v~~-vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l-~~~l~e~GV~~~p~g-----~~lr~~ppl~~t~eei 839 (863)
.+.+++++.+.. ... -|.++.+.+.... ..... ...++ ...+.++||++.|+. +.+|+. +...++.+
T Consensus 351 ~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~-~~~~~--~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis--~~~~~e~l 425 (462)
T PLN02187 351 CDRLKDIPCVVCPKKPESCTYLLTKLELSL-MDNIK--DDIDFCVKLAREENLVFLPGDALGLKNWMRIT--IGVEAHML 425 (462)
T ss_pred HHHHhhCCCCcCCCCCCEeEEEEeecChhh-CCCCC--CHHHHHHHHHhhCCEEEECccccCCCCeEEEE--eCCCHHHH
Confidence 334444554322 123 3567767664210 00000 12234 445678999999742 678885 45678999
Q ss_pred HHHHHHHHHHHHHHHH
Q 002941 840 SQLLLKLYQRLEEFDK 855 (863)
Q Consensus 840 d~~v~~L~~~l~~l~~ 855 (863)
++++++|.+++++..+
T Consensus 426 ~~al~rL~~~l~~~~~ 441 (462)
T PLN02187 426 EDALERLKGFCTRHAK 441 (462)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999876553
No 214
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=99.41 E-value=2.2e-10 Score=129.30 Aligned_cols=213 Identities=10% Similarity=0.044 Sum_probs=131.8
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCCCCCCc
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPL 698 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLggG~~Pi 698 (863)
..+++-| .+..|...+ +++|.++|+++|+++|+|.++ +||.. ...... ..+|+++ +.|.+.|. ..+
T Consensus 134 ~v~~~~~--~~~tG~~~~----~~~i~~l~~~~~~~livDa~~-~~g~~--~~~~~~--~~~d~~v~s~~K~l~g~-~G~ 201 (368)
T PRK13479 134 HVALVHC--ETTTGILNP----LDEIAAVAKRHGKRLIVDAMS-SFGAI--PIDIAE--LGIDALISSANKCIEGV-PGF 201 (368)
T ss_pred EEEEEcc--cCccccccC----HHHHHHHHHHcCCEEEEEccc-ccCCc--cccccc--cCceEEEecCccccccC-CCc
Confidence 3445555 566788876 789999999999999999887 57532 222222 2468764 47988654 346
Q ss_pred eeeeccHHHHHhhhcCCcccee-----------ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHH
Q 002941 699 AATLATNAVFDSFVGDSKLKAL-----------LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (863)
Q Consensus 699 gav~~~~~i~~~l~~~~~~~~~-----------~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l 767 (863)
|++++++++++.+........+ .....|+.+..+.++..++++.+.+++..++..+...++++.+.+.+
T Consensus 202 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L 281 (368)
T PRK13479 202 GFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGM 281 (368)
T ss_pred eEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 8899999998877642110000 01112456777778888888877554434455555566666554443
Q ss_pred HHHHhcCCCeeE-ecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec----CCEEEEecCCCCcHHHHHHH
Q 002941 768 IQQISSHRTVQR-VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----GNVIYLMCGPCSSPEVCSQL 842 (863)
Q Consensus 768 ~~~~~~~p~v~~-vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~----g~~lr~~ppl~~t~eeid~~ 842 (863)
.+. ....+.. -.....+..+.+.... . ....++.+.|.++||.+++. .+.+|+..-...+++|++.+
T Consensus 282 ~~~--g~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t~edi~~~ 353 (368)
T PRK13479 282 RAL--GFEPLLDAEIQSPIIVTFHAPADP---A---YDFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVDAADIRRL 353 (368)
T ss_pred HHc--CCcccCCchhcCceEEEEECCCCC---C---cCHHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCCHHHHHHH
Confidence 321 1111111 0111223344333211 0 01457889999999999875 25789875456799999999
Q ss_pred HHHHHHHHHHH
Q 002941 843 LLKLYQRLEEF 853 (863)
Q Consensus 843 v~~L~~~l~~l 853 (863)
+++|++++.++
T Consensus 354 l~~L~~~l~~~ 364 (368)
T PRK13479 354 VAAIAEALYWM 364 (368)
T ss_pred HHHHHHHHHHc
Confidence 99999988764
No 215
>PRK09265 aminotransferase AlaT; Validated
Probab=99.39 E-value=3.6e-10 Score=129.38 Aligned_cols=212 Identities=12% Similarity=0.079 Sum_probs=126.6
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCCCCc--EE---EeccccC-
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD--IA---CYGKLLT- 692 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PD--iv---t~sKgLg- 692 (863)
-+.+++.| ++..|.+. +.+-+++|.++|++||+++|+||++..|-..+.. ..... ..++ ++ +|||.++
T Consensus 170 ~~v~l~~P--~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~--~~~~~~vi~~~S~SK~~~~ 244 (404)
T PRK09265 170 KAIVIINP--NNPTGAVY-SKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIAS--LAPDLLCVTFNGLSKAYRV 244 (404)
T ss_pred eEEEEECC--CCCCCcCC-CHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHH--cCCCceEEEEecchhhccC
Confidence 35566777 68888655 6778999999999999999999999877433321 11111 1233 33 4799994
Q ss_pred CCCCCceeeec--cHHH----HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHH
Q 002941 693 GGVIPLAATLA--TNAV----FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLE 766 (863)
Q Consensus 693 gG~~Pigav~~--~~~i----~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~ 766 (863)
.| +.+|++++ ++++ .+.+.. ....+++.+.++..++.++|.. .+...++.+..+++.+. .+.
T Consensus 245 pG-lRiG~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~-r~~ 312 (404)
T PRK09265 245 AG-FRVGWMVLSGPKKHAKGYIEGLDM-------LASMRLCANVPAQHAIQTALGG---YQSINELILPGGRLYEQ-RDR 312 (404)
T ss_pred cc-cceEEEEEeCchHHHHHHHHHHHH-------HhccccCCCcHHHHHHHHHhcC---chhHHHHHHHHHHHHHH-HHH
Confidence 57 89999995 4443 332221 1112345677777777777742 11122222211222222 123
Q ss_pred HHHHHhcCCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHH
Q 002941 767 LIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEV 838 (863)
Q Consensus 767 l~~~~~~~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~ee 838 (863)
+.+.+++++.+..+.. -|+++.+.+...... . ......+...|.++||++.|+ .+.+|+.. ..++|+
T Consensus 313 ~~~~L~~~~~~~~~~p~~g~~l~~~~~~~~~~--~-~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~--~~~~e~ 387 (404)
T PRK09265 313 AWELLNAIPGVSCVKPKGALYAFPKLDPKVYP--I-HDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVT--LPRVDD 387 (404)
T ss_pred HHHHHhcCCCCcccCCCcceEEEEEecccccC--C-CCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEe--CCCHHH
Confidence 3444555554433333 366777777532100 0 012345667888999999863 25778764 568899
Q ss_pred HHHHHHHHHHHHHHH
Q 002941 839 CSQLLLKLYQRLEEF 853 (863)
Q Consensus 839 id~~v~~L~~~l~~l 853 (863)
+++++++|.++++..
T Consensus 388 l~~~l~rl~~~l~~~ 402 (404)
T PRK09265 388 LEEAIGRIGRFLSGY 402 (404)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999888654
No 216
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.39 E-value=2.7e-10 Score=130.80 Aligned_cols=332 Identities=13% Similarity=0.041 Sum_probs=185.5
Q ss_pred CcHHHHHHHHHHHHhc--ccccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccc
Q 002941 417 LQIELARDMGYTAARF--GHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLV 493 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~--~~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~t 493 (863)
..|.+.+|+.+.+... ..+....+..+....+++.+....+.+ ..+.+++++++++|+..+++.... .
T Consensus 50 ~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~---------~ 120 (409)
T PLN00143 50 TTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLAR---------P 120 (409)
T ss_pred CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHcC---------C
Confidence 4677888888877642 211112233344555666555432211 135799999999999988876521 1
Q ss_pred cccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhc
Q 002941 494 DFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (863)
Q Consensus 494 gr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~ 573 (863)
| ..|+...-+|.+....+...+. ..+.+|-..
T Consensus 121 g------------d~v~v~~P~y~~~~~~~~~~g~-------------------------------~~~~~~~~~----- 152 (409)
T PLN00143 121 E------------ANILLPRPGFPDVETYAIFHHL-------------------------------EIRHFDLLP----- 152 (409)
T ss_pred C------------CEEEEcCCCCcCHHHHHHHcCC-------------------------------EEEEEeccC-----
Confidence 2 5688888888775333222110 000011000
Q ss_pred cccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc
Q 002941 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (863)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~ 653 (863)
...+ .-| .+.+++.+. ....+.+++.| ++..|.+. +.+.+++|.++|++|
T Consensus 153 ----------~~~~--~~d--------~~~l~~~~~-------~~~~~~~~~nP--~NPTG~~~-s~~~~~~l~~~a~~~ 202 (409)
T PLN00143 153 ----------EKGW--EVD--------LDAVEAIAD-------ENTIAMVIINP--GNPCGSVY-SYEHLNKIAETARKL 202 (409)
T ss_pred ----------CCCC--cCC--------HHHHHHhcc-------cCCEEEEEECC--CCCCCCcc-CHHHHHHHHHHHHHc
Confidence 0000 001 133444432 34567888899 78999655 788899999999999
Q ss_pred CCeEEEecccccccccCCcc-hhhhcCCCCcEE---Eecccc-CCCCCCceeeecc--HHHH------HhhhcCCcccee
Q 002941 654 KIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLL-TGGVIPLAATLAT--NAVF------DSFVGDSKLKAL 720 (863)
Q Consensus 654 gilLI~DEV~TGfGRtG~~~-a~e~~gv~PDiv---t~sKgL-ggG~~Pigav~~~--~~i~------~~l~~~~~~~~~ 720 (863)
|+++|.||++..|-..|..+ ....+.-.+.++ +|||.+ ..| +.+|+++++ +.+. +.+.. .
T Consensus 203 ~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pG-lRvG~~v~~~p~~~~~~~~~~~~~~~------~ 275 (409)
T PLN00143 203 GILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPG-WGLGWLVTCDPSGLLQICEIADSIKK------A 275 (409)
T ss_pred CCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCc-cceEEEEeeCchhhhhhHHHHHHHHH------H
Confidence 99999999998874444321 112222222343 679984 467 899999983 3332 22221 0
Q ss_pred ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE--ecccceEEEEEEccCCcCC
Q 002941 721 LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR--VVALGTLCAIELQAAGCNA 798 (863)
Q Consensus 721 ~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~--vrg~Gl~~~iel~~~~~~~ 798 (863)
....++ .+.++.+++.+.|+-- ..++.++..+..+..++.+ .+.+.+.+.... ...-|.++.+.+..... .
T Consensus 276 ~~~~~~-~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~----~~~L~~~~~~~~~~~p~gg~f~w~~l~~~~~-~ 348 (409)
T PLN00143 276 LNPAPF-PPTFIQAAIPEILEKT-TEDFFSKTINILRAALAFC----YDKLKEIPCIMCPQKAEGAFFALVKLNLLLL-E 348 (409)
T ss_pred HhccCC-CCchHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHH----HHHHhcCCCCCCCCCCCeeEEEEEecchhhc-C
Confidence 111223 3666777777666421 1334444444333333333 333444443221 12236777788753100 0
Q ss_pred CCchHHHHHHH-HHHHHCCcEEEecC-----CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 799 GYGSLYAASLL-KKLREDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 799 ~~~~~~~~~l~-~~l~e~GV~~~p~g-----~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
... ...+++ ..+.++||.+.|+. +.+|+. +..+++++++.+++|.+++++.
T Consensus 349 ~~~--~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~--~~~~~~~l~~al~rl~~~l~~~ 405 (409)
T PLN00143 349 DIE--DDMEFCLKLAKEESLIILPGVTVGLKNWLRIT--FAVEQSSLEDGLGRLKSFCGRH 405 (409)
T ss_pred CCC--CHHHHHHHHHHhCCEEEeCccccCCCCeEEEE--EcCCHHHHHHHHHHHHHHHHHh
Confidence 000 133444 45578999999842 678885 4567899999999999887643
No 217
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=99.39 E-value=2e-10 Score=131.28 Aligned_cols=209 Identities=10% Similarity=0.072 Sum_probs=130.0
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCCCCc--EE---Eecccc-CC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD--IA---CYGKLL-TG 693 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PD--iv---t~sKgL-gg 693 (863)
+.++..| ++..|.. .+.+.+++|.++|++||+++|+||++..|-..|.. .... ...++ ++ +|||.+ ..
T Consensus 171 ~v~~~~p--~NPtG~~-~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~--~~~~~~~vi~~~SfSK~~~~~ 245 (401)
T TIGR01264 171 ALIVNNP--SNPCGSV-FSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLA--SLSSTVPILSCGGLAKRWLVP 245 (401)
T ss_pred EEEEcCC--CCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHH--HcCCCCcEEEEccCcccCCCc
Confidence 3455567 7888865 47888999999999999999999999888544431 1111 12232 43 679984 46
Q ss_pred CCCCceeeeccH------HHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHH
Q 002941 694 GVIPLAATLATN------AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (863)
Q Consensus 694 G~~Pigav~~~~------~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l 767 (863)
| +.+|++++++ ++++.+..- ...+++.++++..++.+.|+-. .+++.++.++..+..++.+.
T Consensus 246 G-lRiG~iv~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~q~a~~~~l~~~-~~~~l~~~~~~~~~~r~~l~--- 313 (401)
T TIGR01264 246 G-WRLGWIIIHDRRGILRDIRDGLVKL-------SQRILGPCTIVQGALPSILLRT-PQEYFDGTLSVLESNAMLCY--- 313 (401)
T ss_pred c-ceEEEEEecCcchhHHHHHHHHHHH-------hhccCCCCcHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHH---
Confidence 6 8999999863 344443320 1123455777888877777531 23445555555444444443
Q ss_pred HHHHhcCCCeeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecC-----CEEEEecCCCCcHHHHH
Q 002941 768 IQQISSHRTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLG-----NVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 768 ~~~~~~~p~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g-----~~lr~~ppl~~t~eeid 840 (863)
+.+++++.+..+ ..-|+++.+.+........ .....++..|+ ++||++.|+. +.+|+.. ..++++++
T Consensus 314 -~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~---~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~--~~~~~~l~ 387 (401)
T TIGR01264 314 -GALAAVPGLRPVMPSGAMYMMVGIEMEHFPEF---KNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVL--TVPVVMME 387 (401)
T ss_pred -HHHHhCCCCcccCCCeeeEEEEEecccccCCC---CCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEE--cCCHHHHH
Confidence 334444433322 3457788888753210000 01356777775 7899998742 6778753 45688999
Q ss_pred HHHHHHHHHHHH
Q 002941 841 QLLLKLYQRLEE 852 (863)
Q Consensus 841 ~~v~~L~~~l~~ 852 (863)
+++++|.+.+++
T Consensus 388 ~~l~rl~~~~~~ 399 (401)
T TIGR01264 388 EACSRIQEFCER 399 (401)
T ss_pred HHHHHHHHHHhc
Confidence 999999887754
No 218
>PRK08636 aspartate aminotransferase; Provisional
Probab=99.39 E-value=2e-10 Score=131.51 Aligned_cols=210 Identities=13% Similarity=0.070 Sum_probs=130.2
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCCCCcE----EEeccccC-
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDI----ACYGKLLT- 692 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PDi----vt~sKgLg- 692 (863)
..+.+++.| ++..|.+. +.+-+++|.++|++|++++|.||++..|-..+.. -....+.-.+|. .+|||.++
T Consensus 176 ~~~i~~~~P--~NPTG~~~-s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 252 (403)
T PRK08636 176 PKYVVVNFP--HNPTTATV-EKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNM 252 (403)
T ss_pred ceEEEEeCC--CCCCCccC-CHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCC
Confidence 344555557 78888555 6777999999999999999999999776322321 111111112343 25899995
Q ss_pred CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 693 gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
.| +.+|++++++++++.+..- .....++.++++.+++..+++- .+++++++++..+..++.+.+ .+.
T Consensus 253 ~G-lRiG~iv~~~~li~~~~~~------~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~----~L~ 319 (403)
T PRK08636 253 AG-WRVGFVVGNKKLVGALKKI------KSWLDYGMFTPIQVAATIALDG--DQSCVEEIRETYRKRRDVLIE----SFA 319 (403)
T ss_pred cc-ceeeeeeCCHHHHHHHHHH------HHHhcccCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 77 8999999999999887641 1112234444555555444431 234555555544444444433 333
Q ss_pred cCCCeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHH
Q 002941 773 SHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 773 ~~p~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v 843 (863)
+++ +.... .-|+++.+.+.+.. . ......++..++ ++||.+.|+ .+.+|+.- ..+++++++++
T Consensus 320 ~~~-~~~~~p~~g~~~~~~l~~~~-~----~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~~~ 391 (403)
T PRK08636 320 NAG-WELQKPRASMFVWAKIPEPA-R----HLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIAL--IENENRIRQAA 391 (403)
T ss_pred HCC-CcccCCCcceEEEEECCCcc-C----CCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEe--cCCHHHHHHHH
Confidence 333 22223 35777778875321 0 001456776655 689999874 26788864 46889999999
Q ss_pred HHHHHHHHH
Q 002941 844 LKLYQRLEE 852 (863)
Q Consensus 844 ~~L~~~l~~ 852 (863)
++|.++++.
T Consensus 392 ~rl~~~l~~ 400 (403)
T PRK08636 392 RNIKKFLKE 400 (403)
T ss_pred HHHHHHHHh
Confidence 999888865
No 219
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=99.39 E-value=1.2e-10 Score=130.32 Aligned_cols=198 Identities=13% Similarity=0.101 Sum_probs=138.0
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~ 696 (863)
..+++.| ++..|... +.+.++++.+.|+++++++|+||++..|...-... ...+ .++++ +|||.++ .| +
T Consensus 133 ~v~l~nP--nNPTG~~~-s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~--~~~~-~~~vi~l~SfSK~~gl~G-l 205 (339)
T PRK06959 133 HLIVVNP--NNPTAERL-PAARLLRWHAQLAARGGTLIVDEAFADTLPAASLA--AHTD-RPGLVVLRSVGKFFGLAG-V 205 (339)
T ss_pred EEEEeCC--CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEECCCccCCCcccch--hccC-CCCEEEEecChhhcCCcc-h
Confidence 5789999 78999665 66668888888999999999999998773211111 1111 24544 7899998 78 8
Q ss_pred CceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002941 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~ 776 (863)
.+|++++++++++.+... ...+..+.++.+++.++|+ +.++.++.++..+..++.+.+. ++++..
T Consensus 206 RiGy~v~~~~li~~l~~~--------~~~~~vs~~~q~a~~~~L~---~~~~~~~~~~~~~~~r~~l~~~----L~~~g~ 270 (339)
T PRK06959 206 RAGFVLAAPALLAALRDA--------LGAWTVSGPARHAVRAAFA---DAAWQAAMRERLAADGARLAAL----LRAHGF 270 (339)
T ss_pred heEEEecCHHHHHHHHHh--------cCCCCCcHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHH----HHHCCC
Confidence 999999999999988752 1345567788888888775 4555666555555555544433 333321
Q ss_pred eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 777 VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 777 v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.+...++++.+.+. . +..+...|.++||+++.++ +.+|++ ...++++.++++++|++.++.+.
T Consensus 271 --~~~~~~~f~~~~~~--~---------~~~l~~~l~~~GI~vr~~~~~~~lRis--i~~~~~e~~~l~~al~~~~~~~~ 335 (339)
T PRK06959 271 --AVHATPLFSWTDDP--R---------AAALHAALARRGIWTRYFAPPPSVRFG--LPADEAEWQRLEDALAECVPTLA 335 (339)
T ss_pred --CccCcceEEEEeCC--C---------HHHHHHHHHhCCeEEEECCCCCeEEEE--CCCCHHHHHHHHHHHHHHHHHHh
Confidence 12234555555542 1 4568899999999999765 678886 33578899999999998887765
Q ss_pred H
Q 002941 855 K 855 (863)
Q Consensus 855 ~ 855 (863)
.
T Consensus 336 ~ 336 (339)
T PRK06959 336 A 336 (339)
T ss_pred h
Confidence 4
No 220
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=99.39 E-value=1.5e-11 Score=139.28 Aligned_cols=236 Identities=14% Similarity=0.080 Sum_probs=149.1
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +.+++++||++|+..+++..++ .| .+||+....||+
T Consensus 36 r~~~p~~~~le~~la~l~g~---~~a~~~~sG~~Ai~~~l~~l~~---------~g------------d~Vl~~~~~y~~ 91 (369)
T cd00614 36 RIGNPTVDALEKKLAALEGG---EAALAFSSGMAAISTVLLALLK---------AG------------DHVVASDDLYGG 91 (369)
T ss_pred CCCChhHHHHHHHHHHHHCC---CCEEEEcCHHHHHHHHHHHHcC---------CC------------CEEEECCCCcch
Confidence 34578899999999999873 5788889999999999986631 12 468888877777
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.. ..+.... ..+ + +....++ .+|
T Consensus 92 ~~-~~~~~~~-~~~------------g-------------~~~~~v~------------------------~~d------ 114 (369)
T cd00614 92 TY-RLFERLL-PKL------------G-------------IEVTFVD------------------------PDD------ 114 (369)
T ss_pred HH-HHHHHHH-hhc------------C-------------eEEEEeC------------------------CCC------
Confidence 53 1111000 000 0 0000000 011
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. .++.+|++|.+ +++.|.+.+ +++|.++|++||+++|+|+++. .+... ..+
T Consensus 115 --~~~l~~~i~--------~~~~~v~~e~~-~np~g~~~d----l~~i~~la~~~g~~livD~t~~-~~~~~-----~~~ 173 (369)
T cd00614 115 --PEALEAAIK--------PETKLVYVESP-TNPTLKVVD----IEAIAELAHEHGALLVVDNTFA-TPYLQ-----RPL 173 (369)
T ss_pred --HHHHHHhcC--------CCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-chhcC-----Chh
Confidence 133444442 24678999987 899887776 8999999999999999999984 32221 112
Q ss_pred CCCCcEE--EeccccCC-CCCCceeeeccH-HHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 679 GCVPDIA--CYGKLLTG-GVIPLAATLATN-AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 679 gv~PDiv--t~sKgLgg-G~~Pigav~~~~-~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
...+|++ +++|.++| |-...|++++++ ++++.+.... .......+|..+++++..|+.+. ...++..+
T Consensus 174 ~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~------~~~g~~~~p~~a~~~l~~l~tl~--~r~~~~~~ 245 (369)
T cd00614 174 ELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLR------LALGTILSPFDAWLLLRGLKTLP--LRMERHSE 245 (369)
T ss_pred hhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHH------HhhCCCCCHHHHHHHHcCCCCHH--HHHHHHHH
Confidence 3356887 66899986 325678888877 8887776421 11234567888777766665432 23455566
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEc
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQ 792 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~ 792 (863)
+..++.+.| +++|.|..| .|.|.|+.+++.
T Consensus 246 na~~la~~L--------~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~ 293 (369)
T cd00614 246 NALKVAEFL--------EKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELK 293 (369)
T ss_pred HHHHHHHHH--------HcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeC
Confidence 666665533 344433222 367999999996
No 221
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=99.38 E-value=2.4e-10 Score=132.71 Aligned_cols=232 Identities=13% Similarity=0.056 Sum_probs=133.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccc----ccc------cCC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG----FWR------LGV 671 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TG----fGR------tG~ 671 (863)
+.|++.+.. .+++++.+|+++.. ++..|..+.+.+.+++|+++|++||++||.|+++.. |+. .+.
T Consensus 164 e~Le~~i~~----~~~~~tk~Ivl~~p-~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~ 238 (460)
T PRK13238 164 EKLEALIEE----VGAENVPFIVMTIT-NNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDK 238 (460)
T ss_pred HHHHHHHhh----cCCCceeEEEEecC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCC
Confidence 456666642 23356888888865 677665677899999999999999999999997742 110 111
Q ss_pred cch-h-hhcCCCCcEEEeccccCCCCCCceeeec-c-HHHHHhhhcCCccceeeccc-CCCccHHHHHHHHH-HHHHhcC
Q 002941 672 ETT-A-DLLGCVPDIACYGKLLTGGVIPLAATLA-T-NAVFDSFVGDSKLKALLHGH-SYSAHALGCAAAAK-SIKWFKD 745 (863)
Q Consensus 672 ~~a-~-e~~gv~PDivt~sKgLggG~~Pigav~~-~-~~i~~~l~~~~~~~~~~~~~-T~~~~pla~AAalA-aL~~l~~ 745 (863)
..+ . ...+--.|+++|+ +--.|+.|+|++++ + +++++.+... ....+++ ||++++..+.+|+| +|+...+
T Consensus 239 si~~i~~~~~s~~D~~~~S-g~K~g~~~~GG~i~~~d~~l~~~~~~~---~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~ 314 (460)
T PRK13238 239 SIKEIAREMFSYADGLTMS-AKKDAMVNIGGLLCFRDEDLFTECRTL---CILYEGFPTYGGLAGRDMEALAVGLYEGMD 314 (460)
T ss_pred CHHHHhhhhcccCcEEEEe-cccCCCCcceeEEEcChHHHHHHhhhc---ccccCCcccccCcHHHHHHHHHhhHHHhhC
Confidence 000 0 0011236888776 33233356555555 4 5777776531 1123444 89998777666665 4543334
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC---cCCCCchHHHHHHHHHHH-HCCcEEEe
Q 002941 746 PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG---CNAGYGSLYAASLLKKLR-EDGVYMRP 821 (863)
Q Consensus 746 ~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~---~~~~~~~~~~~~l~~~l~-e~GV~~~p 821 (863)
+++.+...++.++|.+ .|.+ ...|.+... -|.++.+++..-. ....+. ...++.+|+ +.||.+.|
T Consensus 315 ~~~~~~~~~~~~~l~~----~L~~--~G~~~~~p~--Gg~~v~~d~~~~~~~~~~~~~~---~~~~a~~L~~e~GV~~~~ 383 (460)
T PRK13238 315 EDYLAYRIGQVEYLGE----GLEE--AGVPIQTPA--GGHAVFVDAGKFLPHIPAEQFP---AQALACELYLEAGIRGVE 383 (460)
T ss_pred hHHHHHHHHHHHHHHH----HHHH--CCCCeEccC--CceEEEEEchhcCCCCCCCCCc---hHHHHHHHHHHcCeeeec
Confidence 4444443443344443 3222 244544332 2455556654321 011111 345666555 77998865
Q ss_pred cC------------------CEEEEecCC-CCcHHHHHHHHHHHHHHHHHH
Q 002941 822 LG------------------NVIYLMCGP-CSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 822 ~g------------------~~lr~~ppl-~~t~eeid~~v~~L~~~l~~l 853 (863)
.+ +.+||..|- ..|.+++|.+.++|.+..+.-
T Consensus 384 ~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~~ 434 (460)
T PRK13238 384 IGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKENR 434 (460)
T ss_pred ccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHHhH
Confidence 22 578887664 349999999999998866443
No 222
>PRK08175 aminotransferase; Validated
Probab=99.38 E-value=2.6e-10 Score=130.19 Aligned_cols=211 Identities=12% Similarity=0.098 Sum_probs=131.3
Q ss_pred cEEEEEEc-cccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcCCCCcE----EEeccccC
Q 002941 619 CIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDI----ACYGKLLT 692 (863)
Q Consensus 619 ~iAAvIvE-PViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PDi----vt~sKgLg 692 (863)
++.++++. | ++..|. +.+.+-+++|.++|++||+++|+||++..+-..|... .+-.+.-.+|. .+|||.+|
T Consensus 164 ~~~~v~i~~p--~NPtG~-~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 240 (395)
T PRK08175 164 KPKMMILGFP--SNPTAQ-CVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYN 240 (395)
T ss_pred CceEEEEeCC--CCCCCC-CCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeecccccc
Confidence 44555555 6 788885 4577889999999999999999999997663223211 11111111342 36899996
Q ss_pred -CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHH
Q 002941 693 -GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQI 771 (863)
Q Consensus 693 -gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~ 771 (863)
.| +.+|++++++++++.+... .....++.++.++.++.+.|+. .+...+++++..++.++.+.+ .+
T Consensus 241 ~pG-lRiG~~~~~~~l~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~----~L 307 (395)
T PRK08175 241 MAG-WRIGFMVGNPELVSALARI------KSYHDYGTFTPLQVAAIAALEG--DQQCVRDIAEQYKRRRDVLVK----GL 307 (395)
T ss_pred Ccc-hhheeeeCCHHHHHHHHHH------HhhcccCCCcHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHH----HH
Confidence 67 8999999999999987641 1112345556666667666642 233344444444444443333 33
Q ss_pred hcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHH
Q 002941 772 SSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 772 ~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v 843 (863)
++.+.......-|.++.+++.+.... ..+..++..++ ++||.+.|. .+.+|+.. ..+++.+.+++
T Consensus 308 ~~~~~~~~~p~~g~~i~i~l~~~~~~-----~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~--~~~~~~~~~al 380 (395)
T PRK08175 308 HEAGWMVEMPKASMYVWAKIPEPYAA-----MGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFAL--IENRDRIRQAI 380 (395)
T ss_pred HHcCCcccCCCEEEEEEEECCcccCC-----CCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEe--CCCHHHHHHHH
Confidence 33332111123577888888643100 01456777665 689999874 25788864 46788899999
Q ss_pred HHHHHHHHH
Q 002941 844 LKLYQRLEE 852 (863)
Q Consensus 844 ~~L~~~l~~ 852 (863)
++|.+.+.+
T Consensus 381 ~~l~~~l~~ 389 (395)
T PRK08175 381 RGIKAMFRA 389 (395)
T ss_pred HHHHHHHHh
Confidence 998888764
No 223
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.37 E-value=2.5e-10 Score=128.58 Aligned_cols=317 Identities=13% Similarity=0.006 Sum_probs=183.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC--CCCeEEEeCChhhHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG--WASRAYFSDNGSTAIEIA 477 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~--~~~~v~f~~SGSeAvE~A 477 (863)
..+|+.+|.- ... ..|.+.+++.+.+....+.. +.+..+...++++.+.+..+.. ..+.++.++++++|+..+
T Consensus 22 ~~i~l~~~~p--~~~--~~~~~~~~~~~~~~~~~Y~~-~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~ 96 (357)
T TIGR03539 22 GIVDLSVGTP--VDP--VPPLIRAALAAAADAPGYPQ-TWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWL 96 (357)
T ss_pred CeEEccCCCC--CCC--CCHHHHHHHHHHHhhCCCCc-ccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHH
Confidence 5677776432 122 35788888877655433321 2233355566777776543310 136899999999998877
Q ss_pred HHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 478 LklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
+.+.. .. .| ..|++-+-+|.+....+... |
T Consensus 97 ~~~l~----~~----~g------------d~Vl~~~p~y~~~~~~~~~~-g----------------------------- 126 (357)
T TIGR03539 97 PTLLG----LG----PG------------DTVVIPELAYPTYEVGALLA-G----------------------------- 126 (357)
T ss_pred HHHHc----CC----CC------------CEEEECCCCcHHHHHHHHhc-C-----------------------------
Confidence 66440 00 12 56888888886553222111 0
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
...+.++ + + +.++ ..++.++++... ++..|...
T Consensus 127 -~~~~~v~--------------------------~-----------~-~~l~-------~~~~~~v~~~~p-~NPtG~~~ 159 (357)
T TIGR03539 127 -ATPVAAD--------------------------D-----------P-TELD-------PVGPDLIWLNSP-GNPTGRVL 159 (357)
T ss_pred -CEEeccC--------------------------C-----------h-hhcC-------ccCccEEEEeCC-CCCcCccC
Confidence 0001111 0 0 1121 124455665543 78888655
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchh-h--hcCC-CCc-EE--EeccccC-CCCCCceeeeccHHHHH
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-D--LLGC-VPD-IA--CYGKLLT-GGVIPLAATLATNAVFD 709 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~-e--~~gv-~PD-iv--t~sKgLg-gG~~Pigav~~~~~i~~ 709 (863)
+.+.+++|.++|++||+++|.||++..|...+..... . ..+. ... ++ +|||.++ .| +.+|++++++++++
T Consensus 160 -~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G-~R~G~~i~~~~~~~ 237 (357)
T TIGR03539 160 -SVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAG-YRAGFVAGDPALVA 237 (357)
T ss_pred -CHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCc-eeEEEEecCHHHHH
Confidence 6778999999999999999999999877544432111 1 0111 112 33 6899974 66 89999999999988
Q ss_pred hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEE
Q 002941 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCA 788 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~ 788 (863)
.+... .....++.++++.+++.++|+ ++....++++..+..++.+. +.+.+++ +.-.... |.++.
T Consensus 238 ~~~~~------~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~----~~L~~~g-~~~~~p~~~~~~~ 303 (357)
T TIGR03539 238 ELLTV------RKHAGLMVPAPVQAAMVAALG---DDGHVAEQKARYAARRAQLK----PALEKAG-FRIDHSEAGLYLW 303 (357)
T ss_pred HHHHH------HhhcccCCCHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHH----HHHHHcC-CCCcCCCccEEEE
Confidence 87531 122345567777777766664 33334444443333444333 3333333 1112233 44555
Q ss_pred EEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHH
Q 002941 789 IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 789 iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L 846 (863)
+.+..+ ...+.+.|.++||.+.|. .+.+|++. ..+++++++++++|
T Consensus 304 ~~~~~~----------~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~--~~~~~~i~~~~~~l 356 (357)
T TIGR03539 304 ATRGED----------AWDTVDRLAELGILVAPGDFYGPAGSQHVRVAL--TATDERIAAAVARL 356 (357)
T ss_pred EECCCC----------HHHHHHHHHhCCEEECCccccCCCCCCeEEEEe--cCCHHHHHHHHHhh
Confidence 554321 446778889999999873 26788864 44788899888776
No 224
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=99.36 E-value=2.9e-10 Score=128.70 Aligned_cols=320 Identities=12% Similarity=0.092 Sum_probs=187.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.++|+..+ .+.+| ..|.+.+++.+....+.. |....-.+|.+.+++.++-. .+.+++++++++++..+++
T Consensus 37 ~~i~l~~~--~~~~~--~~~~~~~al~~~~~~~~~-----Y~~~~g~~lr~~ia~~~~~~-~~~i~~t~G~~~~l~~~~~ 106 (371)
T PRK05166 37 RIAKLGSN--ENPLG--PSPAVRRAFADIAELLRL-----YPDPQGRALREAIAARTGVP-ADRIILGNGSEDLIAVICR 106 (371)
T ss_pred ceEEcCCC--CCCCC--CCHHHHHHHHHHHHHhhc-----CCCCcHHHHHHHHHHHhCcC-HHHEEEcCCHHHHHHHHHH
Confidence 67887764 33455 468888888765444322 22222236778888877643 3689999999998877776
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
...+ .| ..|+...-+|.+....+... | .
T Consensus 107 ~~~~---------~g------------d~vli~~P~y~~~~~~~~~~-g------------------------------~ 134 (371)
T PRK05166 107 AVLR---------PG------------DRVVTLYPSFPLHEDYPTMM-G------------------------------A 134 (371)
T ss_pred HhcC---------CC------------CEEEEcCCChHHHHHHHHHc-C------------------------------C
Confidence 5421 12 46777777776542211110 0 0
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
...++|... .+ .-| .+.+++.+.. ..-..++..| ++..|.+. +
T Consensus 135 ~~~~v~~~~-----------------~~--~~~--------~~~l~~~~~~-------~~~~v~l~~p--~NPtG~~~-~ 177 (371)
T PRK05166 135 RVERVTVTP-----------------DL--GFD--------LDALCAAVAR-------APRMLMFSNP--SNPVGSWL-T 177 (371)
T ss_pred eEEEeecCC-----------------CC--CCC--------HHHHHHhhhc-------CCCEEEEeCC--CCCCCCCC-C
Confidence 001111000 00 001 1334444431 2223556778 78889665 6
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCC-c-chhhhc-CCCCcEE---EeccccC-CCCCCceeeec-cHHHHHhh
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-E-TTADLL-GCVPDIA---CYGKLLT-GGVIPLAATLA-TNAVFDSF 711 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~-~a~e~~-gv~PDiv---t~sKgLg-gG~~Pigav~~-~~~i~~~l 711 (863)
.+.+++|.++|++ ++++|+||++..|- .+. . .....+ ...++++ +|||.++ .| +++|++++ ++++++.+
T Consensus 178 ~~~~~~l~~~~~~-~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~G-lRiG~~i~~~~~l~~~~ 254 (371)
T PRK05166 178 ADQLARVLDATPP-ETLIVVDEAYAEYA-AGDDYPSALTLLKARGLPWIVLRTFSKAYGLAG-LRVGYGLVSDPELVGLL 254 (371)
T ss_pred HHHHHHHHHhCCC-CcEEEEECcHHHhc-CCcCcccHHHHHhhcCCCEEEEeechHhhhcch-hheeeeecCCHHHHHHH
Confidence 6677888788864 89999999997763 321 1 111111 1223444 6899998 88 89999765 78888877
Q ss_pred hcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEE
Q 002941 712 VGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791 (863)
Q Consensus 712 ~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel 791 (863)
... ...++.+.++.+++.+.+. +.++.++..+..+..++.+ .+.+++++. .-....|.++.+.+
T Consensus 255 ~~~--------~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l----~~~L~~~g~-~~~p~~g~fl~~~~ 318 (371)
T PRK05166 255 DRV--------RTPFNVNGAAQAAALAALD---DEEHLAKGVALALAERERL----KKELAEMGY-RIAPSRANFLFFDA 318 (371)
T ss_pred HHh--------ccCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHH----HHHHHHCcC-eeCCCcCCEEEEeC
Confidence 531 1234567777777777764 3445555544444444433 334444432 22345677776664
Q ss_pred ccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 792 QAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 792 ~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
..+ ..++++.|.++||++.|. .+.+|+. ..++++.++++++|++.+
T Consensus 319 ~~~----------~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~---~~~~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 319 RRP----------ASAVAEALLRQGVIVKPWKQPGFETFIRVS---IGSPEENDHFVAALDKVL 369 (371)
T ss_pred CCC----------HHHHHHHHHHCCeEEecCCCCCCCCeEEEE---cCCHHHHHHHHHHHHHHh
Confidence 321 456888999999999875 2678886 335677777777776643
No 225
>PRK08354 putative aminotransferase; Provisional
Probab=99.36 E-value=4.9e-10 Score=123.79 Aligned_cols=292 Identities=16% Similarity=0.110 Sum_probs=174.7
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.++|+..+ .++++ .|.+.+|+.+.+..... ++ ....|.+++++..+ ..++.++++++|+..++.
T Consensus 9 ~~i~l~~~--~np~~---p~~~~~a~~~~~~~~~~-----yp--~~~~l~~~ia~~~~----~~I~vt~G~~~al~~~~~ 72 (311)
T PRK08354 9 GLIDFSAS--VNPYP---PEWLDEMFERAKEISGR-----YT--YYEWLEEEFSKLFG----EPIVITAGITEALYLIGI 72 (311)
T ss_pred ceeEecCC--CCCCC---CHHHHHHHHHHHHHhhc-----CC--ChHHHHHHHHHHHC----CCEEECCCHHHHHHHHHH
Confidence 67888864 24454 48899999877654321 22 23567888888876 369999999999887663
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
+. . .| .+|++.+-+|.+....+...+..
T Consensus 73 ~~-~---------~g------------d~vlv~~P~y~~~~~~~~~~g~~------------------------------ 100 (311)
T PRK08354 73 LA-L---------RD------------RKVIIPRHTYGEYERVARFFAAR------------------------------ 100 (311)
T ss_pred hh-C---------CC------------CeEEEeCCCcHHHHHHHHHcCCE------------------------------
Confidence 32 1 12 56888888887764333222110
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
.+..| .| .+.+++.++ +....+++.| ++..|.. .+
T Consensus 101 -~~~~~-------------------------~d--------~~~l~~~~~--------~~~~vi~~~P--~NPTG~~-~~ 135 (311)
T PRK08354 101 -IIKGP-------------------------ND--------PEKLEELVE--------RNSVVFFCNP--NNPDGKF-YN 135 (311)
T ss_pred -EeecC-------------------------CC--------HHHHHHhhc--------CCCEEEEecC--CCCCCCc-cC
Confidence 00011 01 123444432 1235788899 7899964 57
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcCC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDS 715 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~~ 715 (863)
.+-+++|.++|++||+++|.||++.+|...+.. .. .+.++ +|||.++ .| +++|++++ +.+.+...
T Consensus 136 ~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~-----~~-~~~vi~~~S~SK~~~l~G-lRiG~~v~---~~~~l~~~- 204 (311)
T PRK08354 136 FKELKPLLDAVEDRNALLILDEAFIDFVKKPES-----PE-GENIIKLRTFTKSYGLPG-IRVGYVKG---FEEAFRSV- 204 (311)
T ss_pred HHHHHHHHHHhhhcCcEEEEeCcchhccccccc-----cC-CCcEEEEeccHhhcCCcc-ceeeeeee---hHHHHHHc-
Confidence 788999999999999999999999888332211 11 23333 6799998 88 89999998 44555431
Q ss_pred ccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC
Q 002941 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795 (863)
Q Consensus 716 ~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~ 795 (863)
...+..+.++.+++.+.++ . . .+.+.++.+.+..... .+.+.+ ...+.|.++.+++.+
T Consensus 205 -------~~~~~~~~~~~~~~~~~~~---~-~-~~~~~~~~~~~~~~~~-~l~~~l-------~~~~~~~~~~~~~~~-- 262 (311)
T PRK08354 205 -------RMPWSIGSTGYAFLEFLIE---D-D-FEHLRKTMPLIWREKE-RFEKAL-------YVKSDANFFIKDVGD-- 262 (311)
T ss_pred -------CCCccCCHHHHHHHHHHHH---h-H-HHHHHHHHHHHHHHHH-HHHHhc-------CCCCCCcEEEEECCC--
Confidence 1223344555555554443 1 1 1233333223222111 111111 124556666665431
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEecC-----CEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p~g-----~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
..++++.|.++||+++|+. +.+|+. ..++++.++++++|++.
T Consensus 263 ---------~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~---~~~~~~~~~l~~al~~~ 309 (311)
T PRK08354 263 ---------AEKFVEFLKRNGILVRDCTSFGLPGYIRFS---VRDREENEKLIRALREW 309 (311)
T ss_pred ---------HHHHHHHHHHCCeEEEecccCCCCCeEEEE---eCCHHHHHHHHHHHHHh
Confidence 3568888999999999853 678886 44666777777777653
No 226
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=99.36 E-value=2.8e-10 Score=128.00 Aligned_cols=318 Identities=16% Similarity=0.130 Sum_probs=184.6
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.++|+..+ .+.++- .|.+++++.+.+...... .|......+|.+.|+++++....+.++++++++++...+++
T Consensus 27 ~~i~l~~~--~~~~~~--~~~~~~~~~~~~~~~~~~---~Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~ 99 (356)
T PRK04870 27 GMVKLDAM--ENPYRL--PAELRAELGERLAEVALN---RYPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLAL 99 (356)
T ss_pred CceeCcCC--CCCCCC--CHHHHHHHHHHhhccccc---cCCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHH
Confidence 56665543 345664 689999999888642211 12222346677888887763211368888877888887776
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
+... .| .+|++...+|.+....+... | .
T Consensus 100 ~~~~---------~g------------d~vlv~~P~y~~~~~~~~~~-g------------------------------~ 127 (356)
T PRK04870 100 ACAK---------PG------------ATVLAPEPGFVMYRMSAKLA-G------------------------------L 127 (356)
T ss_pred HhcC---------CC------------CEEEECCCCHHHHHHHHHHc-C------------------------------C
Confidence 5421 12 56888888776643221111 1 0
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..+++|... .+ .-| .+.+++.+.. ...-+.+++.| ++..|... +
T Consensus 128 ~~~~i~~~~-----------------~~--~~d--------~~~l~~~~~~------~~~~~v~l~~p--~NPtG~~~-~ 171 (356)
T PRK04870 128 EFVGVPLTA-----------------DF--TLD--------LPAMLAAIAE------HRPALVFLAYP--NNPTGNLF-D 171 (356)
T ss_pred EEEEecCCC-----------------CC--CCC--------HHHHHHHhhc------CCCCEEEEcCC--CCCCCCCC-C
Confidence 111111000 00 011 2345555531 12223445567 78888766 5
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcCC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDS 715 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~~ 715 (863)
.+-++++.++| ++++|+||++..|... . +. ....-.+.++ +||| .+ .| +++|++++++++++.+....
T Consensus 172 ~~~~~~i~~~~---~~~ii~De~y~~~~~~-~-~~-~~~~~~~~vi~~~S~SK-~~~~G-lRiG~~i~~~~~i~~~~~~~ 243 (356)
T PRK04870 172 DADVERIIEAA---PGLVVVDEAYQPFAGD-S-WL-PRLARFPNLLVMRTVSK-LGLAG-LRLGYLAGHPAWIAELDKVR 243 (356)
T ss_pred HHHHHHHHHHC---CCEEEEECCchhhcCc-c-hH-HHHhhCCCEEEEecchh-hhhHH-HhhhhhhCCHHHHHHHHHcc
Confidence 55566666666 7899999999877421 1 11 1111123333 6799 43 46 79999999999998876421
Q ss_pred ccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC
Q 002941 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795 (863)
Q Consensus 716 ~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~ 795 (863)
..++.+.++.+++..+++ +.+..++..+..+..++.+. +.+.+.+.+......|.++.+.+. .
T Consensus 244 --------~~~~~~~~~q~~a~~~l~---~~~~~~~~~~~~~~~~~~l~----~~L~~~~~~~~~~~~~~~~~~~~~--~ 306 (356)
T PRK04870 244 --------PPYNVNVLTQATALFALE---HVDVLDAQAAQLRAERTRLA----AALAALPGVTVFPSAANFILVRVP--D 306 (356)
T ss_pred --------CCCcCCHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHH----HHHHhCCCcEECCCCCeEEEEECC--C
Confidence 234456677766666665 33333444444444444433 333444444333455667777654 1
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
...+...|.++||.+++. .+.+|+. ..+.++++.++++|+++
T Consensus 307 ---------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis---~~~~~~~~~l~~al~~~ 355 (356)
T PRK04870 307 ---------AAAVFDGLKTRGVLVKNLSGMHPLLANCLRVT---VGTPEENAQFLAALKAA 355 (356)
T ss_pred ---------HHHHHHHHHHCCEEEEECCCCCCCCCCeEEEe---CCCHHHHHHHHHHHHHh
Confidence 346788899999999874 2578886 34788999999988765
No 227
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=99.35 E-value=6.7e-11 Score=132.90 Aligned_cols=193 Identities=18% Similarity=0.237 Sum_probs=125.0
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGV 695 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~ 695 (863)
-..+|+.| ++..|... +.+.+++|.+.|++ ++++|+||++..|. +...........|+++ +|||.+| .|
T Consensus 147 ~lv~l~nP--nNPTG~~~-~~~~l~~l~~~~~~-~~~vivDEay~~f~--~~~s~~~~~~~~~n~iv~rSfSK~~glaG- 219 (351)
T PRK01688 147 KVVYVCSP--NNPTGNLI-NPQDLRTLLELTRG-KAIVVADEAYIEFC--PQASLAGWLAEYPHLVILRTLSKAFALAG- 219 (351)
T ss_pred cEEEEeCC--CCCCCCCC-CHHHHHHHHHhCCC-CcEEEEECchhhcC--CCCChHHHHhhCCCEEEEecchHhhcCHH-
Confidence 35677888 78899765 66678888888876 68999999998774 2111122223345655 6899987 67
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+.+|++++++++++.+... ...|..+.++.++|.++|+.- ..++.++..+.....++.+ .+.+.+.+
T Consensus 220 lRiGy~i~~~~~i~~l~~~--------~~~~~v~~~~~~~a~~~L~~~-~~~~~~~~~~~~~~~r~~l----~~~L~~~~ 286 (351)
T PRK01688 220 LRCGFTLANEEVINLLLKV--------IAPYPLSTPVADIAAQALSPQ-GIAAMRERVAEINANRQWL----IAALKEIP 286 (351)
T ss_pred HHHhHHhCCHHHHHHHHhc--------cCCCCCCHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHH----HHHHHhCC
Confidence 8999999999999988742 123455666677777666521 1122322223222333333 33444555
Q ss_pred Cee-EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC------CEEEEecCCCCcHHHHHHHHHHH
Q 002941 776 TVQ-RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG------NVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 776 ~v~-~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g------~~lr~~ppl~~t~eeid~~v~~L 846 (863)
.+. -....|.++.+.+. . ...+.+.|+++||++++.+ +.+|++ ..++++++.++++|
T Consensus 287 ~~~~~~ps~~nfi~~~~~--~---------~~~l~~~L~~~gi~vr~~~~~~~~~~~iRis---~~~~~e~~~l~~al 350 (351)
T PRK01688 287 CVEQVFDSETNYILARFT--A---------SSAVFKSLWDQGIILRDQNKQPGLSNCLRIT---IGTREECQRVIDAL 350 (351)
T ss_pred CCCeECCCCCcEEEEEcC--C---------HHHHHHHHHHCCeEEEECCCcCCCCCeEEEe---CCCHHHHHHHHHhh
Confidence 432 22445677777663 1 4578889999999998642 678887 45789999999877
No 228
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=99.35 E-value=4.9e-10 Score=128.33 Aligned_cols=213 Identities=12% Similarity=0.098 Sum_probs=128.8
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCCCCcEE---Eecccc-CC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLL-TG 693 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv---t~sKgL-gg 693 (863)
....+++.| ++..|. +.+.+-+++|.++|++||+++|+||++..|...+.. .....+.-.++++ +|||.+ ..
T Consensus 170 ~~~v~i~~p--~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~p 246 (403)
T TIGR01265 170 TVAIVVINP--SNPCGS-VFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVP 246 (403)
T ss_pred ccEEEEecC--CCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCC
Confidence 345666667 678885 456777899999999999999999999888544432 2222221122344 679985 45
Q ss_pred CCCCceeeecc--HH-----HHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHH
Q 002941 694 GVIPLAATLAT--NA-----VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLE 766 (863)
Q Consensus 694 G~~Pigav~~~--~~-----i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~ 766 (863)
| +.+|++++. ++ +.+.+.. ....+.+.++++..++.+.|+. ..+.+.++.++..++-++.+
T Consensus 247 G-lRiG~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l--- 314 (403)
T TIGR01265 247 G-WRLGWIIIHDPHGIFRDTVLQGLKN-------LLQRILGPATIVQGALPDILEN-TPQEFFDGKISVLKSNAELC--- 314 (403)
T ss_pred c-ceEEEEEEeCchhhhHHHHHHHHHH-------HhhhhcCCChHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHH---
Confidence 6 899999874 22 3333321 1112345677787777777753 12344444444444434433
Q ss_pred HHHHHhcCCCeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHH-HHCCcEEEec-----CCEEEEecCCCCcHHHH
Q 002941 767 LIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKL-REDGVYMRPL-----GNVIYLMCGPCSSPEVC 839 (863)
Q Consensus 767 l~~~~~~~p~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l-~e~GV~~~p~-----g~~lr~~ppl~~t~eei 839 (863)
.+.++.++.+..+. .-|.++.+++...... .. ....+++..+ .++||.+.|+ .+.+|+. +...++.+
T Consensus 315 -~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~-~~--~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis--~~~~~~~l 388 (403)
T TIGR01265 315 -YEELKDIPGLVCPKPEGAMYLMVKLELELFP-EI--KDDVDFCEKLVREESVICLPGSAFGLPNWVRIT--ITVPESML 388 (403)
T ss_pred -HHHHhcCCCceecCCCceeEEEEeccccccC-CC--CCHHHHHHHHHHhCCEEEeCccccCCCCeEEEE--ecCCHHHH
Confidence 34445555443233 3567777887542100 00 0144676765 5789999874 2678886 34567888
Q ss_pred HHHHHHHHHHHHH
Q 002941 840 SQLLLKLYQRLEE 852 (863)
Q Consensus 840 d~~v~~L~~~l~~ 852 (863)
++.+++|.+.+++
T Consensus 389 ~~~l~~l~~~~~~ 401 (403)
T TIGR01265 389 EEACSRIKEFCER 401 (403)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888877654
No 229
>PRK06855 aminotransferase; Validated
Probab=99.34 E-value=5.4e-10 Score=129.23 Aligned_cols=228 Identities=13% Similarity=0.094 Sum_probs=133.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGC 680 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv 680 (863)
+.+++.+.. ++...+.+++.| ++..|. +.+++.+++|.++|++||+++|.||++..|-..+.. -.... +
T Consensus 160 ~~l~~~~~~-----~~~~~~i~l~~P--~NPTG~-~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~--~ 229 (433)
T PRK06855 160 DDLENKVKY-----NPSIAGILLINP--DNPTGA-VYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSE--V 229 (433)
T ss_pred HHHHHHHhc-----CCCceEEEEECC--CCCCCc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHH--H
Confidence 445555532 223456678889 788886 557888999999999999999999999888444431 11111 1
Q ss_pred CCc---E--EEeccccC-CCCCCceeeecc-----H---HHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcCh
Q 002941 681 VPD---I--ACYGKLLT-GGVIPLAATLAT-----N---AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDP 746 (863)
Q Consensus 681 ~PD---i--vt~sKgLg-gG~~Pigav~~~-----~---~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~ 746 (863)
.+| | -.|||.++ .| +.+|++++. + ++++.+... .....+.+.+++.++.+.|+--+-+
T Consensus 230 ~~~~~~I~~~S~SK~~~~pG-lRiG~ii~p~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Q~a~~~~l~~~~~~ 301 (433)
T PRK06855 230 IGDVPGIALKGISKELPWPG-SRCGWIEVYNADKDEVFKKYINSILNA-------KMIEVCSTTLPQMAIPRIMSHPEYK 301 (433)
T ss_pred cCcCCeEEEecCccccCCCc-ceEEEEEEeCCchhhHHHHHHHHHHHh-------hccccCCChHHHHHHHHhhcCCcHH
Confidence 222 2 26799996 78 899999972 2 233333221 1123345677777776666411002
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc-eEEEEEEccCCc----CCCCch----H-----------HHH
Q 002941 747 QTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG-TLCAIELQAAGC----NAGYGS----L-----------YAA 806 (863)
Q Consensus 747 ~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G-l~~~iel~~~~~----~~~~~~----~-----------~~~ 806 (863)
++.+++++..+..++.+ .+.+.+++.+...+..| .++.+.+..... ...... . ...
T Consensus 302 ~~~~~~~~~~~~r~~~~----~~~L~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (433)
T PRK06855 302 NYLKERNKRYEKRSNIA----YEKLKDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDK 377 (433)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHhcCCCeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchH
Confidence 23334333333333332 34445554443344545 666677753200 000000 0 123
Q ss_pred HHHH-HHHHCCcEEEec---C---CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 807 SLLK-KLREDGVYMRPL---G---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 807 ~l~~-~l~e~GV~~~p~---g---~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
+++. .+.++||.+.|+ + +.+|+... ..+++++++.+++|.+++++
T Consensus 378 ~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~-~~~~~~i~~~~~~l~~~~~~ 429 (433)
T PRK06855 378 RFVYYLLASTGICVVPLSSFCTELNGFRVTLL-ERDEEKFEWIYQTLAEKIEE 429 (433)
T ss_pred HHHHHHHHHcCEEEecCCcCCCCCCceEEEEC-CCcHHHHHHHHHHHHHHHHH
Confidence 4554 466889999874 2 45787642 25899999999999998875
No 230
>PRK07337 aminotransferase; Validated
Probab=99.34 E-value=5.2e-10 Score=127.34 Aligned_cols=211 Identities=18% Similarity=0.163 Sum_probs=129.1
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-C
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-G 693 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-g 693 (863)
...+.++..| ++..|... +.+-+++|.++|++||+++|+||++.+|...+..... ....++++ +|||.++ .
T Consensus 163 ~~~~v~l~~p--~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~--~~~~~~vi~~~S~SK~~~~~ 237 (388)
T PRK07337 163 RTRGVLLASP--SNPTGTSI-APDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSA--LSLGDDVITINSFSKYFNMT 237 (388)
T ss_pred cceEEEEECC--CCCCCcCc-CHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcCh--hhccCCEEEEEechhhcCCc
Confidence 3455666777 68888554 6788999999999999999999999877544432111 12335655 5799996 6
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +.+|++++++++++.+... ......+.++++..++.++++- ...+...+.++..++.++.+ .+.+.+
T Consensus 238 G-~RiG~~~~~~~l~~~l~~~------~~~~~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~r~~~----~~~L~~ 305 (388)
T PRK07337 238 G-WRLGWLVVPEALVGTFEKL------AQNLFICASALAQHAALACFEP-DTLAIYERRRAEFKRRRDFI----VPALES 305 (388)
T ss_pred h-hheeeeecCHHHHHHHHHH------HHHhccCCChHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHHH----HHHHHh
Confidence 7 8999999999998887641 1122334567777776666541 01112233333333333333 333444
Q ss_pred CCCeeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHH-HHCCcEEEec--------CCEEEEecCCCCcHHHHHHHH
Q 002941 774 HRTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKL-REDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 774 ~p~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l-~e~GV~~~p~--------g~~lr~~ppl~~t~eeid~~v 843 (863)
++....+ ..-|.++.+++...... ......+++..+ .++||.+.|+ .+.+|+.. ..+++++.+++
T Consensus 306 ~~~~~~~~p~~g~f~~~~~~~~~~~---~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~--~~~~~~l~~~l 380 (388)
T PRK07337 306 LGFKVPVMPDGAFYVYADCRGVAHP---AAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSY--ATSMSRLEEAV 380 (388)
T ss_pred cCCccccCCCeeEEEEEecccccCC---CCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEe--cCCHHHHHHHH
Confidence 4332112 33577888888631100 000145677664 5789999763 25778764 44688888888
Q ss_pred HHHHHHH
Q 002941 844 LKLYQRL 850 (863)
Q Consensus 844 ~~L~~~l 850 (863)
++|.+++
T Consensus 381 ~rl~~~l 387 (388)
T PRK07337 381 ARLGKLF 387 (388)
T ss_pred HHHHHHh
Confidence 8887654
No 231
>PRK05942 aspartate aminotransferase; Provisional
Probab=99.34 E-value=5.1e-10 Score=127.72 Aligned_cols=200 Identities=10% Similarity=0.029 Sum_probs=119.6
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhc----CCCCcEEEeccccC-CC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL----GCVPDIACYGKLLT-GG 694 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~----gv~PDivt~sKgLg-gG 694 (863)
+.+++.| ++..|.+ .+.+-+++|.++|++||+++|+||++..|-..|.. .....+ +..-.+-+|||.++ .|
T Consensus 173 ~i~l~~P--~NPtG~~-~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~G 249 (394)
T PRK05942 173 ILYFNYP--SNPTTAT-APREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAG 249 (394)
T ss_pred EEEEcCC--CCCCCCc-CCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChh
Confidence 4444557 7888855 57888999999999999999999999766433321 111111 11122347899886 67
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+.+|++++++++++.+.... ....++.+.++..++.++|+.. +++.+++++..+..++.+.+. +.+.
T Consensus 250 -lRiG~i~~~~~l~~~l~~~~------~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~----L~~~ 316 (394)
T PRK05942 250 -WRVGFVVGNRHIIQGLRTLK------TNLDYGIFSALQKAAETALQLP--DSYLQQVQERYRTRRDFLIQG----LGEL 316 (394)
T ss_pred -hheeeeecCHHHHHHHHHHH------hhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHH----HHHC
Confidence 89999999999999886421 1123455666777777777632 234444454444444444333 3333
Q ss_pred CCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHH-HHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHH
Q 002941 775 RTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKK-LREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 775 p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~-l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~ 845 (863)
+ +.-.... |+++.+.+.... ...++... +.++||.+.|. .+.+|++.. ...+.+.+.+++
T Consensus 317 ~-~~~~~~~~~~f~~~~~~~~~--------~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~--~~~~~l~~~l~~ 385 (394)
T PRK05942 317 G-WNIPPTKATMYLWVPCPVGM--------GSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLI--ADCDRLGEALDR 385 (394)
T ss_pred C-CeecCCCeeeEEEEECCCCC--------CHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEec--CCHHHHHHHHHH
Confidence 3 2223333 446667765321 13345554 45789999763 267888753 344455555554
Q ss_pred HH
Q 002941 846 LY 847 (863)
Q Consensus 846 L~ 847 (863)
|.
T Consensus 386 l~ 387 (394)
T PRK05942 386 LK 387 (394)
T ss_pred HH
Confidence 43
No 232
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.34 E-value=6.2e-10 Score=126.94 Aligned_cols=199 Identities=12% Similarity=0.040 Sum_probs=124.8
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC--Ccc-hh---hhcCC--CCcEE---Eecc
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VET-TA---DLLGC--VPDIA---CYGK 689 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG--~~~-a~---e~~gv--~PDiv---t~sK 689 (863)
+.+++.| ++..|... +.+.+++|.++|++||+++|.||++..+...+ ... .. ...+. .+.++ +|||
T Consensus 168 ~i~l~~p--~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK 244 (393)
T TIGR03538 168 LLFVCSP--GNPTGAVL-SLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSK 244 (393)
T ss_pred EEEEeCC--CCCcCccc-CHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchh
Confidence 4456677 88999654 78889999999999999999999997664332 111 11 11221 12333 6799
Q ss_pred ccC-CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHH
Q 002941 690 LLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELI 768 (863)
Q Consensus 690 gLg-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~ 768 (863)
.++ .| +.+|++++++++++.+... ....+++.+++.+.++.+++. .+++.++.++..+..++.+.+.+.
T Consensus 245 ~~~~~G-lRvG~~i~~~~l~~~~~~~------~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~L~ 314 (393)
T TIGR03538 245 RSNLPG-LRSGFVAGDAEILKAFLRY------RTYHGCAMPIPTQLASIAAWN---DEQHVRENRALYREKFAAVLEILG 314 (393)
T ss_pred hcCCcc-cceEEEecCHHHHHHHHHH------HHhhccCcCHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 754 56 8999999999998877531 111344567777777777663 333444444444444443333322
Q ss_pred HHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------------CCEEEEecCCCC
Q 002941 769 QQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------------GNVIYLMCGPCS 834 (863)
Q Consensus 769 ~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------------g~~lr~~ppl~~ 834 (863)
+. .+. ....-|.++.+++. .+ ..++++.|+ ++||.+.|+ .+.+|+. ++.
T Consensus 315 ~~---~~~--~~p~gg~f~~~~~~-~~---------~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris--~~~ 377 (393)
T TIGR03538 315 QV---LDL--ELPDAGFYLWPKVP-GD---------DEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIA--LVA 377 (393)
T ss_pred hh---Ccc--cCCCeeEEEEEECC-CC---------HHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEE--ecC
Confidence 21 111 12345677778775 11 346777775 589999653 1467775 345
Q ss_pred cHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQR 849 (863)
Q Consensus 835 t~eeid~~v~~L~~~ 849 (863)
+++++++++++|.+.
T Consensus 378 ~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 378 PLEECVEAAERIRSF 392 (393)
T ss_pred CHHHHHHHHHHHHHh
Confidence 789999999888764
No 233
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=99.34 E-value=1.4e-09 Score=122.94 Aligned_cols=323 Identities=13% Similarity=0.161 Sum_probs=167.9
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~ 496 (863)
-.+++.+|+.+.++.+. ...+...+++++++++++. +.++++++|++|+..|++..+. .|
T Consensus 25 ~~~~v~~a~~~~~~~~~------~~~~~~~~~~~~~a~~~g~---~~~~~~~g~t~al~~al~al~~---------~G-- 84 (363)
T TIGR01437 25 VSDEVADAQKRGAQNYF------EIKELVNKTGEYIANLLGV---EDAVIVSSASAGIAQSVAAVIT---------RG-- 84 (363)
T ss_pred CCHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHhhCC---CeEEEEcCHHHHHHHHHHHHhc---------CC--
Confidence 36899999999876542 2356778899999999873 5789999999999999987631 11
Q ss_pred CCCccccccccEEEEecCCCccCcccccee-cCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccc
Q 002941 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEA-QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (863)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~gals~-t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (863)
.+++. .. -|.+....-.+ ...+.|.. | . ..+ +......|...+.++.
T Consensus 85 ----------d~~~~-~~-~~~s~~~~~eVi~~~~~~~~-----~-~--~~~---~~~~~~~g~~~v~v~~--------- 132 (363)
T TIGR01437 85 ----------NRYLV-EN-LHDSKIEVNEVVLPKGHNVD-----Y-G--APV---ETMVRLGGGKVVEAGY--------- 132 (363)
T ss_pred ----------Ccchh-hc-ccccccccceEEEECccchh-----c-C--Cch---HHHHHhcCCeEEEEcC---------
Confidence 12222 12 23332100000 00000000 0 0 000 0000000000010000
Q ss_pred cccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCC
Q 002941 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (863)
Q Consensus 576 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gi 655 (863)
+..-| .+.+++.+. ++..+.+++..- .+..|.+.+ +++|.++|++||+
T Consensus 133 ------------~~~~d--------~~~le~ai~-------~~t~ai~~v~~~-~~~~g~~~~----~~~i~~~a~~~gi 180 (363)
T TIGR01437 133 ------------ANECS--------AEQLEAAIT-------EKTAAILYIKSH-HCVQKSMLS----VEDAAQVAQEHNL 180 (363)
T ss_pred ------------CCCCC--------HHHHHHhcC-------hhceEEEEEecC-CCCcCCcCC----HHHHHHHHHHcCC
Confidence 00001 245566553 223344434432 345565555 7889999999999
Q ss_pred eEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHH
Q 002941 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGC 733 (863)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~ 733 (863)
++|+|++|. + . ......+| .|++++| |.|+|. ..|++++++++++.+..... . .+..+......+
T Consensus 181 ~vivD~a~~-~--~--~~~~~~~g--~D~~~~S~~K~l~gp--~~G~l~~~~~~i~~~~~~~~--~--~~~~~~~~~~~~ 247 (363)
T TIGR01437 181 PLIVDAAAE-E--D--LQKYYRLG--ADLVIYSGAKAIEGP--TSGLVLGKKKYIEWVKLQSK--G--IGRAMKVGKENI 247 (363)
T ss_pred eEEEECCCC-C--c--hHHHHHcC--CCEEEEeCCcccCCC--ceEEEEEcHHHHHHHHhccC--C--CcceeccCHHHH
Confidence 999999995 2 1 11111233 5988774 999764 48888888888876532100 0 001111112335
Q ss_pred HHHHHHHHHhcC--hhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe---cccce---EEEEEEccCCcCCCCchHHH
Q 002941 734 AAAAKSIKWFKD--PQTNHNIIPERRILRELWDLELIQQISSHRTVQRV---VALGT---LCAIELQAAGCNAGYGSLYA 805 (863)
Q Consensus 734 AAalAaL~~l~~--~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v---rg~Gl---~~~iel~~~~~~~~~~~~~~ 805 (863)
++..++++.+.+ .+..+...++.++ + .+.+++.|.+.-. ...|. ...+.+.... .. ...
T Consensus 248 ~gl~aAl~~~~~~~~~~~~~~~~~~~~----l----~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~--~g---~~~ 314 (363)
T TIGR01437 248 LGLTAALEQYLSTGKESGAEMVAKLTP----F----IEALNTLKGVSASIVQDEAGRDIARAEIRFDESE--LG---MTA 314 (363)
T ss_pred HHHHHHHHHHHccCcccHHHHHHHHHH----H----HHHHhcCCCeEEEEecCCCCCcCceEEEEEeccC--CC---CCH
Confidence 555566666533 2222222222222 2 3334445443222 11111 1223333210 00 125
Q ss_pred HHHHHHHHHCC--cEEEe---cCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 806 ASLLKKLREDG--VYMRP---LGNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 806 ~~l~~~l~e~G--V~~~p---~g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.++.+.|.++| |++++ ..+.+++.|. +.+++|++.++++|++.+
T Consensus 315 ~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~-~~~~~e~~~~~~~l~~~~ 363 (363)
T TIGR01437 315 ADVVQALRQGEPAIYTRGYKANEGIIEIDPR-SVTGGQLDIIVERIREIV 363 (363)
T ss_pred HHHHHHHhcCCCCEEEeeeeecCCeEEEEee-cCCHHHHHHHHHHHHHhC
Confidence 67888998877 77775 2368888866 567999999999998753
No 234
>PTZ00377 alanine aminotransferase; Provisional
Probab=99.33 E-value=6.4e-10 Score=130.34 Aligned_cols=221 Identities=14% Similarity=0.085 Sum_probs=132.6
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC-Ccc-hhhh--cCCCC------cEE---Ee
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-VET-TADL--LGCVP------DIA---CY 687 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG-~~~-a~e~--~gv~P------Div---t~ 687 (863)
+.+++.| ++..|.+ .+.+-+++|.++|++||+++|.||++..+-..+ ..+ .+.. .+..+ .++ +|
T Consensus 221 ~l~l~~P--~NPTG~~-~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~ 297 (481)
T PTZ00377 221 ALVVINP--GNPTGQV-LTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHST 297 (481)
T ss_pred EEEEECC--CCCCCcC-CCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecC
Confidence 4677788 7899965 478889999999999999999999997763322 211 1111 12222 244 47
Q ss_pred cccc-C-CCCCCceeeec---cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc--C---hhhHHhHHHHHH
Q 002941 688 GKLL-T-GGVIPLAATLA---TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK--D---PQTNHNIIPERR 757 (863)
Q Consensus 688 sKgL-g-gG~~Pigav~~---~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~--~---~~l~~~l~~~~~ 757 (863)
||++ + .| +.+|++++ ++++++.+... ...+++.++++.+++.++|+-.+ + +.+.+++.+..+
T Consensus 298 SK~~~~~~G-lRiG~~~~~~~p~~li~~l~~~-------~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 369 (481)
T PTZ00377 298 SKGIIGECG-RRGGYFELTNIPPEVREQIYKL-------ASINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFT 369 (481)
T ss_pred CcccccCCc-CceEEEEEeCCCHHHHHHHHHH-------hheecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHH
Confidence 9986 4 57 89999986 89999887641 12234578888888888885311 1 112233333222
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEecccce-EEEEEEccCC-cCCCC---chHHHHHH-HHHHHHCCcEEEec---C-----
Q 002941 758 ILRELWDLELIQQISSHRTVQRVVALGT-LCAIELQAAG-CNAGY---GSLYAASL-LKKLREDGVYMRPL---G----- 823 (863)
Q Consensus 758 ~l~~~l~~~l~~~~~~~p~v~~vrg~Gl-~~~iel~~~~-~~~~~---~~~~~~~l-~~~l~e~GV~~~p~---g----- 823 (863)
.+++.. +.+.+.+.+++.+......|. ++.+.+..+. ..... .......+ ...|.++||.+.|+ +
T Consensus 370 ~~~~rr-~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~ 448 (481)
T PTZ00377 370 SLKRRA-ELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGT 448 (481)
T ss_pred HHHHHH-HHHHHHHhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCC
Confidence 222221 123445556666655566664 4444443111 00000 00001223 45566789999873 2
Q ss_pred CEEEEecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 824 NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 824 ~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
+.+|++ +..+++++++++++|.+.+++..+
T Consensus 449 ~~~Rls--~~~~~e~l~~~l~rl~~~~~~~~~ 478 (481)
T PTZ00377 449 YHFRIT--ILPPEEQIEEMVKKIKEFHESFMK 478 (481)
T ss_pred CEEEEE--ECCCHHHHHHHHHHHHHHHHHHHH
Confidence 368875 457788999999999998876543
No 235
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=99.33 E-value=1e-09 Score=123.81 Aligned_cols=200 Identities=12% Similarity=0.026 Sum_probs=125.3
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch-hhh--cCCC-CcEE---Eecccc
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADL--LGCV-PDIA---CYGKLL 691 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a-~e~--~gv~-PDiv---t~sKgL 691 (863)
++.+|++... ++..|.+. +.+-+++|.++|++||+++|.||++..|...|.... ... .+.. +.++ +|||.+
T Consensus 148 ~~~~v~~~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 225 (364)
T PRK07865 148 RPALIWLNSP-SNPTGRVL-GVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQS 225 (364)
T ss_pred cceEEEEcCC-CCCCCccC-CHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhcc
Confidence 3455666554 88998665 577899999999999999999999987754443211 111 0111 2233 689998
Q ss_pred C-CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 002941 692 T-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (863)
Q Consensus 692 g-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~ 770 (863)
+ .| +.+|++++++++++.+... ....++..+++..+++.+.|+ ++++.++.++..+..++.+ .+.
T Consensus 226 ~~~G-lRiG~i~~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~l----~~~ 291 (364)
T PRK07865 226 NLAG-YRAGFVAGDPALVAELLEV------RKHAGMMVPAPVQAAMVAALG---DDAHVREQRERYARRRAVL----RPA 291 (364)
T ss_pred CCCc-eeeEEEecCHHHHHHHHHH------HHhcCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHH----HHH
Confidence 5 66 8999999999998887641 112334456777777666654 3444444444444444433 333
Q ss_pred HhcCCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHH
Q 002941 771 ISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQL 842 (863)
Q Consensus 771 ~~~~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~ 842 (863)
+.+++ +.-..+. |+++.+.+..+ ...+.+.|.++||++.|+ .+.+|+.. ..++++++++
T Consensus 292 L~~~g-~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~~~~~ 358 (364)
T PRK07865 292 LEAAG-FRVDHSEAGLYLWATRGED----------CWDTVAWLAERGILVAPGDFYGPAGAQHVRVAL--TATDERIAAA 358 (364)
T ss_pred HHHcC-CcccCCCccEEEEEeCCCC----------HHHHHHHHHHCCEEEeCccccCcCCCCEEEEEe--cCCHHHHHHH
Confidence 43443 2222333 44555555221 345778889999999863 25788864 3478999999
Q ss_pred HHHHH
Q 002941 843 LLKLY 847 (863)
Q Consensus 843 v~~L~ 847 (863)
+++|.
T Consensus 359 ~~~l~ 363 (364)
T PRK07865 359 VERLA 363 (364)
T ss_pred HHHhh
Confidence 98874
No 236
>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=7.9e-11 Score=127.59 Aligned_cols=355 Identities=14% Similarity=0.093 Sum_probs=220.0
Q ss_pred EEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc-C-CC--CCChHHHHHHHHH
Q 002941 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-F-PE--NVYEPALECAELL 452 (863)
Q Consensus 377 ~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~-~-~~--~~~~~~~eLae~L 452 (863)
.++++.-+.+. .+||+ .++.+.| +|.+|...++++.+.+...+.+|+.+. . .+ ++-+.+.+|.++|
T Consensus 79 ~v~e~~~~~~~---~i~G~----~~~N~aS---~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~i 148 (467)
T KOG1358|consen 79 PVLESVMLPHV---TIDGK----DVLNFAS---ANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRI 148 (467)
T ss_pred cccccccCCce---EecCc----eeecccc---hhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHH
Confidence 34554434322 35788 8888887 677777678999999999999997653 1 12 3568899999999
Q ss_pred HhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCC
Q 002941 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (863)
Q Consensus 453 ~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~ 532 (863)
+.++|- +..+.-+-|-.+++.++..- .+| .+||..+..-|=...-++.++...
T Consensus 149 akF~G~---E~aivYs~gF~ti~S~ipaf-----------sKr-----------GDIi~~de~~nfaIq~GlqlSRS~-- 201 (467)
T KOG1358|consen 149 AKFMGT---EDAIVYSYGFSTIESAIPAF-----------SKR-----------GDIIFVDEAVNFAIQKGLQLSRST-- 201 (467)
T ss_pred HHhhCC---cceeeeccccchhhhcchhh-----------hcc-----------CcEEEEehhhhHHHHHHHhhhhhe--
Confidence 999994 44444456888888888743 122 567777665433322223222100
Q ss_pred CCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 002941 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (863)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i 612 (863)
..+|. | +| ...+|+.+-+..
T Consensus 202 ------------i~~Fk--------------------h--------------------nd--------m~~lerll~E~~ 221 (467)
T KOG1358|consen 202 ------------ISYFK--------------------H--------------------ND--------MEDLERLLPEQE 221 (467)
T ss_pred ------------eEEec--------------------C--------------------CC--------HHHHHHhccCcc
Confidence 00000 0 11 112222222111
Q ss_pred --CCCCCC---cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC--cchhhhcCCCC---
Q 002941 613 --GLKVSG---CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVP--- 682 (863)
Q Consensus 613 --~~~~~~---~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--~~a~e~~gv~P--- 682 (863)
.+.++. ..--+++|.+ .-..|.++| +++|.++..||..-+|+||-.+ ||..|+ .+..+|+|+.+
T Consensus 222 ~~~~K~~k~~~~Rrfiv~EGl-~~N~g~i~p----l~~iv~lk~Kyk~RvildEs~S-fG~lg~~GrGvteH~~v~~~~i 295 (467)
T KOG1358|consen 222 DEDQKNPKKALTRRFIVVEGL-YANTGDICP----LPEIVKLKNKYKFRVILDESLS-FGVLGKTGRGVTEHFGVPITDI 295 (467)
T ss_pred hhhhhccccccceEEEEEEee-ccCCCcccc----cHHHHHHHhhheEEEEEecccc-cccccccCccccccCCCCccce
Confidence 011222 2456889998 777888988 8999999999999999999995 888887 67889999863
Q ss_pred cEEEec--cccC--CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc-ChhhHHhHHHHHH
Q 002941 683 DIACYG--KLLT--GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK-DPQTNHNIIPERR 757 (863)
Q Consensus 683 Divt~s--KgLg--gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~-~~~l~~~l~~~~~ 757 (863)
|+++.| -+|+ ||+ ++++.-+++.=+-.+ ...-++-+..|+...||..++++++ +++..+.++....
T Consensus 296 Div~~sm~~alas~GgF-----c~G~~~i~~hQrLSg----~~Y~fSAslPp~la~aa~~ai~i~~~~p~~~~~L~~k~~ 366 (467)
T KOG1358|consen 296 DIVTASMETALASGGGF-----CAGKSFIADHQRLSG----SGYCFSASLPPYLAGAAIKAILIEEWNPEIVQPLRAKVA 366 (467)
T ss_pred eeeeecccccccccCce-----eecceeeEeeeeccc----cceeeeccCchhhhhhHHHHHHHHhhCcchhhhhhcccc
Confidence 566653 3553 453 666655554322111 1122333456888889999999885 4555566666555
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEecc--cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe-----------cCC
Q 002941 758 ILRELWDLELIQQISSHRTVQRVVA--LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-----------LGN 824 (863)
Q Consensus 758 ~l~~~l~~~l~~~~~~~p~v~~vrg--~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p-----------~g~ 824 (863)
.+...|.. .... .+.| ...++-+.+.+...........-.+++..|+.+|+++.. ...
T Consensus 367 ~~H~~l~~-------~s~~--~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~~~p 437 (467)
T KOG1358|consen 367 KFHAALSS-------NSGF--IVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAEGVLLTRAKYLEKLERCPIPP 437 (467)
T ss_pred ccchhhhc-------CCce--EEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhhcceehhhhhhhhcccCCCCC
Confidence 55442211 1111 1222 334555555543212222233556788888877887753 125
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 825 VIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 825 ~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.+|+.....+++||++.+.+.+++...+
T Consensus 438 Siri~~~a~~seeel~ra~~~ik~~~~~ 465 (467)
T KOG1358|consen 438 SIRICVSAGMSEEELERAAELIKEVASA 465 (467)
T ss_pred cEEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 7899989999999999999999887654
No 237
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=99.32 E-value=3.3e-09 Score=120.49 Aligned_cols=205 Identities=13% Similarity=0.101 Sum_probs=128.6
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIP 697 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~P 697 (863)
..+|++.-+ ++..|.+.+ +++|.++|++||+++|+|+++. +|.. .. ......+|++++| |.+| .|
T Consensus 141 t~lv~~~~~-~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~-~g~~--~~--~~~~~~~D~~~~s~~K~~g---p~ 207 (382)
T TIGR03403 141 TALVSVMWA-NNETGMIFP----IKEIGEICKERGVLFHTDAVQA-IGKI--PV--DVQKAGVDFLSFSAHKFHG---PK 207 (382)
T ss_pred CeEEEEEcc-cCCCccccC----HHHHHHHHHHcCCEEEEechhh-cCCC--cc--CccccCCCEEEEcchhhCC---CC
Confidence 355666654 788998887 7899999999999999999984 4322 11 1112347999888 9532 23
Q ss_pred -ceeeeccHHHH--HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 698 -LAATLATNAVF--DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 698 -igav~~~~~i~--~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|++.++++.. ..+....... .....+.|..+..++.++++.+++ ..+...+..+.+++++. +.+++.
T Consensus 208 G~g~l~vr~~~~~~p~~~g~~~~~---~~~~gt~~~~~~~al~~al~~~~~--~~~~~~~~~~~l~~~l~----~~L~~~ 278 (382)
T TIGR03403 208 GVGGLYIRKGVELTPLFHGGEHMG---GRRSGTLNVPYIVAMGEAMRLANE--YLDFEKSHVRRLRDRLE----DALLEL 278 (382)
T ss_pred ceEEEEECCCCCCCCcccCCCCCC---CcccCCcChHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHH----HHHhcC
Confidence 56776665431 0110000000 011344677788777888876643 24445555556666543 334445
Q ss_pred CCeeEeccc----ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec------------------------CCEE
Q 002941 775 RTVQRVVAL----GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVI 826 (863)
Q Consensus 775 p~v~~vrg~----Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~------------------------g~~l 826 (863)
+.+.-+... ..++.+.+.... ...+...|.++||.++.+ +..+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~i 349 (382)
T TIGR03403 279 PDVFVVGDREHRVPNTILISIKGVE---------GEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAI 349 (382)
T ss_pred CCEEEECCCCCCcCCEEEEEeCCCC---------HHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeE
Confidence 544333221 335555554322 445666788999999841 2469
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 827 YLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 827 r~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
|+++...+|++|||+++++|+++++++..
T Consensus 350 R~s~~~~~t~~did~~~~~l~~~~~~~~~ 378 (382)
T TIGR03403 350 RLSLSRFTTEEEIDYTIEVFKKAVQRLRA 378 (382)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998877653
No 238
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.32 E-value=3.5e-10 Score=130.12 Aligned_cols=188 Identities=15% Similarity=0.038 Sum_probs=123.2
Q ss_pred HHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC-C-CCcEE--EeccccCCCCCCceeeeccHHHHHhhhcCCccc
Q 002941 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG-C-VPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLK 718 (863)
Q Consensus 643 L~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g-v-~PDiv--t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~ 718 (863)
+++++++|++||++|++|++| ++|-.|-....+.++ + ..|++ |++|+|.|. ..|++++++++.+.+... .
T Consensus 237 l~~i~eia~~~gA~L~VD~AH-~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP--~GG~I~~~~~l~~~L~~a---~ 310 (493)
T PRK13580 237 FAKLREIADEVGAVLMVDMAH-FAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGP--RGGLVLAKKEYADAVDKG---C 310 (493)
T ss_pred HHHHHHHHHHcCCEEEEECch-hhceeccccchhhcCCCCCCcEEEeCChhhccCC--CeEEEEecHHHHHHHhhC---C
Confidence 999999999999999999999 677776322222221 1 46876 568999653 246688899999988532 1
Q ss_pred eeecccCCCccHHHHHHHHHHHHHhcCh---hhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC
Q 002941 719 ALLHGHSYSAHALGCAAAAKSIKWFKDP---QTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795 (863)
Q Consensus 719 ~~~~~~T~~~~pla~AAalAaL~~l~~~---~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~ 795 (863)
++ .++..-.|..+|++.+ +..+.++ ++.++++++.++|++.|.+. .++.+.. ....-++.|.+.+..
T Consensus 311 P~--i~gg~l~p~iAA~avA-l~e~~~~ef~~y~~~l~~Na~~La~~L~~~------G~~vv~g-gTdshIV~V~lg~~~ 380 (493)
T PRK13580 311 PL--VLGGPLPHVMAAKAVA-LAEARTPEFQKYAQQVVDNARALAEGFLKR------GARLVTG-GTDNHLVLIDVTSFG 380 (493)
T ss_pred Cc--ccCCCccHHHHHHHHH-HHHHhCccHHHHHHHHHHHHHHHHHHHHhc------CCCccCC-CCCCCEEEEEeCCHH
Confidence 22 2222334444444444 5554433 36788999999988765432 2222110 012357777776542
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEe-------c----CCEEEEecCC----CCcHHHHHHHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRP-------L----GNVIYLMCGP----CSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p-------~----g~~lr~~ppl----~~t~eeid~~v~~L~~~l~~l 853 (863)
.....+.+.|.++||++.+ . ..+||+.++. .++++|++++++.|.++++..
T Consensus 381 -------~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~~ 446 (493)
T PRK13580 381 -------LTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSNT 446 (493)
T ss_pred -------HHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHhh
Confidence 1133667799999999963 2 3689999888 446999999999999988754
No 239
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.31 E-value=2.8e-10 Score=132.55 Aligned_cols=188 Identities=14% Similarity=0.030 Sum_probs=117.2
Q ss_pred HHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCCCCCceeeeccHHHH-----------H
Q 002941 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVF-----------D 709 (863)
Q Consensus 643 L~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~~~i~-----------~ 709 (863)
+++|+++|++||++|++|++| ++|..|..+....++ ..|++ |+.|+|.|- +-|.+++++++. +
T Consensus 200 ~a~i~~ia~~~ga~LlvD~AH-~~Gli~~~~~~~p~~-~~Div~~t~hK~L~GP--~Gg~I~~~~~~~~~~~~g~~~~~d 275 (475)
T PLN03226 200 YARMRKIADKVGALLMCDMAH-ISGLVAAQEAASPFE-YCDVVTTTTHKSLRGP--RGGMIFFRKGPKPPKGQGEGAVYD 275 (475)
T ss_pred HHHHHHHHHHcCCEEEEEchh-hhCcccCCCCCCCCC-CCeEEEecCcccccCC--CceEEEEchhhcccccCCCccHHH
Confidence 779999999999999999999 577665533212222 47887 457999652 234567777644 3
Q ss_pred h--hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChh---hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc
Q 002941 710 S--FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ---TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG 784 (863)
Q Consensus 710 ~--l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~---l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G 784 (863)
. .... ..+.+++.+.++..+++..++|+++.+++ +.+++.++++++.+.|.+ .....+..- -..
T Consensus 276 ~~~~i~~----a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~------~G~~l~~~~-t~~ 344 (475)
T PLN03226 276 YEDKINF----AVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMS------KGYKLVTGG-TDN 344 (475)
T ss_pred HHHHhcc----ccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHh------CCCEEEcCC-CCC
Confidence 2 1111 11233444566888888889999986544 456677777777664322 122222110 012
Q ss_pred eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec----------CCEEEE----ecCCCCcHHHHHHHHHHHHHHH
Q 002941 785 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----------GNVIYL----MCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 785 l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~----------g~~lr~----~ppl~~t~eeid~~v~~L~~~l 850 (863)
.++.|++.... ....++.+.|.+.||++... ...+|+ .....++++|++++.+.|.+++
T Consensus 345 hi~lv~~~~~g-------i~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~ 417 (475)
T PLN03226 345 HLVLWDLRPLG-------LTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAV 417 (475)
T ss_pred CEEEEEccCCC-------CCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 45556664321 01345677788899988531 245776 3344578999999999999999
Q ss_pred HH
Q 002941 851 EE 852 (863)
Q Consensus 851 ~~ 852 (863)
+.
T Consensus 418 ~~ 419 (475)
T PLN03226 418 TI 419 (475)
T ss_pred HH
Confidence 84
No 240
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=99.30 E-value=7.9e-10 Score=122.63 Aligned_cols=336 Identities=15% Similarity=0.130 Sum_probs=195.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCC-------hHHHHHHHHHHhhcCCCCCCeEEEeCChhh
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-------EPALECAELLLQGVGKGWASRAYFSDNGST 472 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~-------~~~~eLae~L~~~~p~~~~~~v~f~~SGSe 472 (863)
-|+|..+ +.. -+|+|++++...+... +.+ +...| ....+..+.++++++.. .+.++|+++|+|
T Consensus 3 iYlD~~A---TTp----~~~~v~~~m~~~~~~~-fgN-PsS~H~~G~~A~~~ve~AR~~iA~llga~-~~eIiFTSG~TE 72 (386)
T COG1104 3 IYLDNAA---TTP----VDPEVLEAMLPYLTEV-FGN-PSSLHSFGREARKAVEEAREQIAKLLGAD-PEEIIFTSGATE 72 (386)
T ss_pred ccccccc---cCC----CCHHHHHHHHHHHHhh-cCC-ccchhHhHHHHHHHHHHHHHHHHHHhCCC-CCeEEEecCCcH
Confidence 5788654 344 3699999999998876 222 11122 33445556667777754 378999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCc
Q 002941 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (863)
Q Consensus 473 AvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (863)
+|-.|||-++..+ ..+. . ++.||+..-= |=..+.++.- ...++.
T Consensus 73 snNlaI~g~~~a~-~~~~--~------------~~HIIts~iE-H~aVl~~~~~--------------Le~~g~------ 116 (386)
T COG1104 73 SNNLAIKGAALAY-RNAQ--K------------GKHIITSAIE-HPAVLNTCRY--------------LERQGF------ 116 (386)
T ss_pred HHHHHHHhhHHhh-hccc--C------------CCeEEEcccc-cHHHHHHHHH--------------HHhcCC------
Confidence 9999999764322 1111 1 1456554322 2221111110 000000
Q ss_pred ccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 002941 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (863)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~ 632 (863)
++-.+++-. ..-. + .+.|+++|. ++...|-+-=+ +++
T Consensus 117 -----~Vtyl~V~~-----------------------~G~v-~-----~e~L~~al~--------~~T~LVSim~a-NnE 153 (386)
T COG1104 117 -----EVTYLPVDS-----------------------NGLV-D-----LEQLEEALR--------PDTILVSIMHA-NNE 153 (386)
T ss_pred -----eEEEeCCCC-----------------------CCeE-c-----HHHHHHhcC--------CCceEEEEEec-ccC
Confidence 000011000 0000 0 255667764 34566666666 899
Q ss_pred CCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEecc-ccCCCCCCceeeeccHHHHHhh
Q 002941 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK-LLTGGVIPLAATLATNAVFDSF 711 (863)
Q Consensus 633 gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sK-gLggG~~Pigav~~~~~i~~~l 711 (863)
-|++.| +++|.++|+++|++|.+|-|| ++|+.- .-.+.+ ..|+++||- -++|- =.+|++..++.+.-
T Consensus 154 ~G~IQp----I~ei~~i~k~~~i~fHvDAvQ-a~Gkip--i~~~~~--~vD~ls~SaHK~~Gp-kGiGaLyv~~~~~~-- 221 (386)
T COG1104 154 TGTIQP----IAEIGEICKERGILFHVDAVQ-AVGKIP--IDLEEL--GVDLLSFSAHKFGGP-KGIGALYVRPGVRL-- 221 (386)
T ss_pred eeeccc----HHHHHHHHHHcCCeEEEehhh-hcCcee--cccccc--CcceEEeehhhccCC-CceEEEEECCCCcc--
Confidence 999998 999999999999999999999 587762 222332 379999973 44432 34677777654321
Q ss_pred hcCCccceeecccCC-------CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee---E-e
Q 002941 712 VGDSKLKALLHGHSY-------SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ---R-V 780 (863)
Q Consensus 712 ~~~~~~~~~~~~~T~-------~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~---~-v 780 (863)
.++.||+.. +-|..+.++.-+++++..++ ++.-......+++.|.+.+.+. .|.+. . .
T Consensus 222 ------~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~--~~~~~~~~~~lr~~l~~~l~~~---~p~~~~~g~~~ 290 (386)
T COG1104 222 ------EPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEE--LEEENARLRKLRDRLEDGLLEI---IPDVYLNGDDE 290 (386)
T ss_pred ------CceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhc---CCcEEEcCCcc
Confidence 223333332 23566666666677764322 2233344456666655444332 13221 1 1
Q ss_pred cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe------------------------cCCEEEEecCCCCcH
Q 002941 781 VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP------------------------LGNVIYLMCGPCSSP 836 (863)
Q Consensus 781 rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p------------------------~g~~lr~~ppl~~t~ 836 (863)
......+.+-|..-+ ...+...|-.+||.+.. ....+||+.....|+
T Consensus 291 ~rlP~~~~~~f~gv~---------gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~ 361 (386)
T COG1104 291 PRLPNILNFSFPGVE---------GESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTE 361 (386)
T ss_pred cCCCCeEEEEeCCCc---------HHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCH
Confidence 122234444454332 44556666677888862 126899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRLEEFDKV 856 (863)
Q Consensus 837 eeid~~v~~L~~~l~~l~~~ 856 (863)
+|+|.++++|.++++.+++.
T Consensus 362 eei~~~~~~l~~~i~~lr~~ 381 (386)
T COG1104 362 EEIDAAAEALKEIIKRLREL 381 (386)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999988764
No 241
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.30 E-value=1.8e-09 Score=124.04 Aligned_cols=186 Identities=11% Similarity=0.035 Sum_probs=106.5
Q ss_pred HHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCCCCCceeeecc-HHHHHhhhcCCccce
Q 002941 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLAT-NAVFDSFVGDSKLKA 719 (863)
Q Consensus 643 L~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~-~~i~~~l~~~~~~~~ 719 (863)
+++|.++|++||+++|+||+|. +|..+........+ ..|++ +++|+++| .+.|+++++ +++.+.+....
T Consensus 182 ~~~I~~la~~~~~~livD~a~~-~g~~~~g~~~~~~~-~~di~~~S~~K~l~g--~~gg~i~~~~~~~~~~l~~~~---- 253 (416)
T PRK00011 182 FKRFREIADEVGAYLMVDMAHI-AGLVAAGVHPSPVP-HADVVTTTTHKTLRG--PRGGLILTNDEELAKKINSAV---- 253 (416)
T ss_pred HHHHHHHHHHcCCEEEEECcch-hcccccCccCCCCC-CCcEEEecCCcCCCC--CCceEEEeCCHHHHHHHHHHh----
Confidence 8999999999999999999984 44433211011122 35776 56899954 578888885 78888776421
Q ss_pred eecccCCCccHHHHHHH-HHHHHHhcC--hhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC-eeEecccceEEEEEEccCC
Q 002941 720 LLHGHSYSAHALGCAAA-AKSIKWFKD--PQTNHNIIPERRILRELWDLELIQQISSHRT-VQRVVALGTLCAIELQAAG 795 (863)
Q Consensus 720 ~~~~~T~~~~pla~AAa-lAaL~~l~~--~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~-v~~vrg~Gl~~~iel~~~~ 795 (863)
..+...+..+..+++. .+.++.+++ +++.+++.++.+++.+.| . +.+. +..-.....++.+.+.+..
T Consensus 254 -~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L----~----~~g~~~~~~~~~~~~~~i~~~~~~ 324 (416)
T PRK00011 254 -FPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEAL----A----ERGFRVVSGGTDNHLVLVDLRSKG 324 (416)
T ss_pred -CccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----H----hCCCeeeecCCCCeEEEEeCcccC
Confidence 1111111222233333 344444432 223444455444444433 2 2221 1110112355566654221
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEe----c-------CCEEEEecC----CCCcHHHHHHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRP----L-------GNVIYLMCG----PCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p----~-------g~~lr~~pp----l~~t~eeid~~v~~L~~~l~~ 852 (863)
.....+.+.|.++||.++. . ...+|+... ..++++|++++++.|++++..
T Consensus 325 -------~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 325 -------LTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred -------CCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence 0134578888899999972 2 245777432 246799999999999998876
No 242
>PLN02651 cysteine desulfurase
Probab=99.30 E-value=2.7e-10 Score=128.54 Aligned_cols=318 Identities=12% Similarity=0.037 Sum_probs=179.2
Q ss_pred CcHHHHHHHHHHHHhc-ccccC-CC----CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcc
Q 002941 417 LQIELARDMGYTAARF-GHVMF-PE----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~-~~~~~-~~----~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G 490 (863)
-.++|.+|+.+.+... ..... .. ...+...++.++|+++++.+ .+.+.|+++|++|+..+++.+++.+. .
T Consensus 11 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~t~~~t~a~~~~l~~~~~~~~-~-- 86 (364)
T PLN02651 11 IDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGAD-PKEIIFTSGATESNNLAIKGVMHFYK-D-- 86 (364)
T ss_pred CCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHHHHHHHHHHHHHhcc-C--
Confidence 4688999998877542 21110 00 01234567778888888753 35899999999999999987743111 0
Q ss_pred ccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhh
Q 002941 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (863)
Q Consensus 491 ~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (863)
. ..+||+....|++. ......-. . .+ . .+..++.....
T Consensus 87 --~------------g~~vl~~~~~h~s~-~~~~~~~~--~-~g-----------~-----------~v~~v~~~~~~-- 124 (364)
T PLN02651 87 --K------------KKHVITTQTEHKCV-LDSCRHLQ--Q-EG-----------F-----------EVTYLPVKSDG-- 124 (364)
T ss_pred --C------------CCEEEEcccccHHH-HHHHHHHH--h-cC-----------C-----------EEEEEccCCCC--
Confidence 0 14677765555442 22111100 0 00 0 01111111000
Q ss_pred hhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHH
Q 002941 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (863)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc 650 (863)
.-| .+.+++.+. +++.++++..+ .+..|.+.+ +++|.++|
T Consensus 125 -------------------~~d--------~~~l~~~i~--------~~t~lv~v~~~-~n~tG~~~~----l~~I~~~~ 164 (364)
T PLN02651 125 -------------------LVD--------LDELAAAIR--------PDTALVSVMAV-NNEIGVIQP----VEEIGELC 164 (364)
T ss_pred -------------------cCC--------HHHHHHhcC--------CCcEEEEEECC-CCCceeccc----HHHHHHHH
Confidence 001 234555553 23567777776 788898877 89999999
Q ss_pred HHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCccceeec-ccCCC
Q 002941 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKALLH-GHSYS 727 (863)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~-~~T~~ 727 (863)
++||+++++|.+|+ +|.. .+-.+.+ .+|++++| | ++|. ..+|++.++++..+.+...-....... ....+
T Consensus 165 ~~~g~~~~vD~a~~-~g~~--~~~~~~~--~~D~~~~s~hK-~~gp-~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT 237 (364)
T PLN02651 165 REKKVLFHTDAAQA-VGKI--PVDVDDL--GVDLMSISGHK-IYGP-KGVGALYVRRRPRVRLEPLMSGGGQERGRRSGT 237 (364)
T ss_pred HHcCCEEEEEcchh-hCCc--ccCcccC--CCCEEEechhh-hCCC-CceEEEEEcCCCCCCCCccccCCCccCCccCCC
Confidence 99999999999994 5422 2223333 46999885 8 5433 447888888876655432100000000 01224
Q ss_pred ccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe---cccceEEEEEEccCCcCCCCchHH
Q 002941 728 AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV---VALGTLCAIELQAAGCNAGYGSLY 804 (863)
Q Consensus 728 ~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v---rg~Gl~~~iel~~~~~~~~~~~~~ 804 (863)
.|..++++..++|+++.+. .+++++..+.+.+++.+.+.+.+.....++.. +....++.+.+...+
T Consensus 238 ~~~~~~~~l~~al~~~~~~--~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~--------- 306 (364)
T PLN02651 238 ENTPLVVGLGAACELAMKE--MDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYVE--------- 306 (364)
T ss_pred ccHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCCC---------
Confidence 5677888888999988642 36667777777776655443221111112110 112336666664322
Q ss_pred HHHHHHHHHHCCcEEEec------------------------CCEEEEecCCCCcHHHHH
Q 002941 805 AASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 805 ~~~l~~~l~e~GV~~~p~------------------------g~~lr~~ppl~~t~eeid 840 (863)
...+.+.|.+ |.++.+ .+.+|+++...+|++|||
T Consensus 307 ~~~~~~~L~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 307 GESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred HHHHHHHhCC--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 3456666644 555311 258999999999999985
No 243
>PLN02672 methionine S-methyltransferase
Probab=99.30 E-value=9.5e-10 Score=136.45 Aligned_cols=357 Identities=12% Similarity=0.049 Sum_probs=198.9
Q ss_pred EEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCC--CCeEE
Q 002941 388 SVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGW--ASRAY 465 (863)
Q Consensus 388 ~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~--~~~v~ 465 (863)
++++.+|. ..+++..+- +.++ -.|.|.+|+.+.+.+..+. ....+....+++.+++..+-.. -+.++
T Consensus 690 ~~~~~~g~----~vI~LsinE--~d~p--pPp~V~eAi~eal~~~~~s---~g~pdlr~aLa~~la~~~Gv~~d~~e~II 758 (1082)
T PLN02672 690 SVSGSQES----SLIHMDVDE--SFLP--VPSAVKASIFESFVRQNIS---ESETDPRPSILQFIKSNYGFPTDSCTEFV 758 (1082)
T ss_pred CCcccCCC----CEEEEeCCC--CCCC--CCHHHHHHHHHHHhhcCCC---CCChHHHHHHHHHHHHHhCcCCCCCCEEE
Confidence 45555666 777877643 4455 4789999999887665331 1234557788999988755431 13688
Q ss_pred EeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCC
Q 002941 466 FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRG 545 (863)
Q Consensus 466 f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~ 545 (863)
++++..++...+++.... .| ..|++...+|.+....+-..+.
T Consensus 759 vt~Gs~elL~lll~aLl~---------pG------------D~VLVp~PtY~~Y~~~a~~~Ga----------------- 800 (1082)
T PLN02672 759 YGDTSLALFNKLVLCCVQ---------EG------------GTLCFPAGSNGTYVSAAKFLKA----------------- 800 (1082)
T ss_pred EeCCHHHHHHHHHHHHcC---------CC------------CEEEEeCCChHHHHHHHHHcCC-----------------
Confidence 887766666666654411 12 5688888888776433322211
Q ss_pred cccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE
Q 002941 546 LFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII 625 (863)
Q Consensus 546 ~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIv 625 (863)
..+++|-.. .+.|. -| .+.+++.+.. ......+|+
T Consensus 801 --------------~vv~Vpl~~---------------e~gf~--lD--------~d~Le~al~~------~~~~~I~L~ 835 (1082)
T PLN02672 801 --------------NFRRIPTKS---------------SDGFK--LT--------AKTLASTLET------VKKPWVYIS 835 (1082)
T ss_pred --------------EEEEEeccc---------------ccCCC--CC--------HHHHHHHhcc------CCCCEEEEE
Confidence 001111000 00000 01 1345555531 123467889
Q ss_pred ccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc---hh----hhc-CCCC--cEE---EeccccC
Q 002941 626 EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET---TA----DLL-GCVP--DIA---CYGKLLT 692 (863)
Q Consensus 626 EPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~---a~----e~~-gv~P--Div---t~sKgLg 692 (863)
.|- ++..|. +.+.+.+++|.++|++||+++|.||++.++-..|... .+ ..+ ...+ .++ +|||.++
T Consensus 836 nPn-hNPTG~-v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~ 913 (1082)
T PLN02672 836 GPT-INPTGL-LYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELL 913 (1082)
T ss_pred CcC-CCCcCc-cCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhc
Confidence 994 588995 5588889999999999999999999998775444321 11 111 1112 233 5788665
Q ss_pred -CCCCCceeeecc-HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 002941 693 -GGVIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (863)
Q Consensus 693 -gG~~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~ 770 (863)
.| +.+|+++++ +++++.+.... .....+..+..+++++++.+. -+..++.+.+.+..+.+.+.. +.+.+.
T Consensus 914 lpG-LRIGylIap~~eLi~~l~~~~-----~~s~~~~~~q~Aaaaalall~-~~~~~~~~~l~e~r~~Lk~rR-d~L~e~ 985 (1082)
T PLN02672 914 SGG-HEFGFLALNDSVLIDAFHSAP-----GLSRPHSTLKYTIKKLLGLKN-QKSSDLLDGVAEQKKILKSRA-ERLKET 985 (1082)
T ss_pred cHH-HHheeEEeCCHHHHHHHHHhh-----hhcCCCcHHHHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 56 899999986 45888876410 011112223444444444332 023334444444433333221 123344
Q ss_pred HhcCCCeeEecccceEEE-EEEccCCc---CCCCc------hHHHHHHHHHHHHC-CcEEEec---C--CEEEEecCCCC
Q 002941 771 ISSHRTVQRVVALGTLCA-IELQAAGC---NAGYG------SLYAASLLKKLRED-GVYMRPL---G--NVIYLMCGPCS 834 (863)
Q Consensus 771 ~~~~p~v~~vrg~Gl~~~-iel~~~~~---~~~~~------~~~~~~l~~~l~e~-GV~~~p~---g--~~lr~~ppl~~ 834 (863)
+.+++ +...+..|.++. +.+..-.. +.... ......+++.|+++ ||.+.|+ | +.+|+. +..
T Consensus 986 L~~~G-i~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIs--fa~ 1062 (1082)
T PLN02672 986 LEACG-WDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFS--FAL 1062 (1082)
T ss_pred HHHCC-CeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEE--ecC
Confidence 44453 334456555444 43321000 00000 01246788888875 9999874 2 677775 456
Q ss_pred cHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~ 851 (863)
+++++++++++|.+.++
T Consensus 1063 ~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1063 EDSEFDRALKAIARFKE 1079 (1082)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 88899999999987553
No 244
>PLN02409 serine--glyoxylate aminotransaminase
Probab=99.29 E-value=8.3e-10 Score=126.42 Aligned_cols=308 Identities=14% Similarity=0.038 Sum_probs=182.0
Q ss_pred hHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccc
Q 002941 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522 (863)
Q Consensus 443 ~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~g 522 (863)
+...++.++|.++++.+.-+.++|++||++|++.++...++ .| .+||+...+|.+....
T Consensus 42 ~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~---------~G------------d~Vlv~~~~~~~~~~~ 100 (401)
T PLN02409 42 ALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTLS---------PG------------DKVVSFRIGQFSLLWI 100 (401)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCC---------CC------------CEEEEeCCCchhHHHH
Confidence 45567777788877643224689999999999988865421 12 5788888777654321
Q ss_pred cceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHH
Q 002941 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602 (863)
Q Consensus 523 als~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 602 (863)
-+ +. .+ +. .+..++.+... .-| .+
T Consensus 101 ~~-~~---~~------------g~-----------~v~~v~~~~~~---------------------~~~--------~~ 124 (401)
T PLN02409 101 DQ-MQ---RL------------NF-----------DVDVVESPWGQ---------------------GAD--------LD 124 (401)
T ss_pred HH-HH---Hc------------CC-----------ceEEEECCCCC---------------------CCC--------HH
Confidence 11 00 00 00 01111111000 001 24
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHH--HHHcCCeEEEecccccccccCCcchhhhcCC
Q 002941 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE--CQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (863)
Q Consensus 603 ~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrel--c~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (863)
.+++.+.+ ....++.+|++--+ .+..|.+.+ ++++.++ |++||+++|+|++++ +|.. ....+.+
T Consensus 125 ~l~~~l~~----~~~~~~k~v~~~~~-~~~tG~~~~----~~~i~~l~~~~~~g~~~vvD~v~s-~g~~--~id~~~~-- 190 (401)
T PLN02409 125 ILKSKLRQ----DTNHKIKAVCVVHN-ETSTGVTND----LAGVRKLLDCAQHPALLLVDGVSS-IGAL--DFRMDEW-- 190 (401)
T ss_pred HHHHHHhh----CcCCCccEEEEEee-cccccccCC----HHHHHHHHhhhccCcEEEEEcccc-cCCc--ccccccc--
Confidence 45566642 00024555555544 566788876 7778888 999999999999985 5321 1222222
Q ss_pred CCcEEEe--ccccCCCCCCceeeeccHHHHHhhhcCCccceee----------ccc---CCCccHHHHHHHHHHHHHhcC
Q 002941 681 VPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDSKLKALL----------HGH---SYSAHALGCAAAAKSIKWFKD 745 (863)
Q Consensus 681 ~PDivt~--sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~----------~~~---T~~~~pla~AAalAaL~~l~~ 745 (863)
..|++++ .|++++. .-+|+++++++.++.+..... ..+. ... .++.+...+.+..++|+++.+
T Consensus 191 ~~D~~~~s~~K~l~~P-~G~G~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~ 268 (401)
T PLN02409 191 GVDVALTGSQKALSLP-TGLGIVCASPKALEASKTAKS-PRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFE 268 (401)
T ss_pred CccEEEEcCccccCcC-CCcceeEECHHHHHHHhcCCC-CCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 4587765 6999765 358889999998887753211 0000 011 335566778888899998764
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-cc-cceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEe-
Q 002941 746 PQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRP- 821 (863)
Q Consensus 746 ~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-rg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p- 821 (863)
.+ .++++++.+.+.+.+.+.+.+. ....+..- .. .+.+..+.+.... ....+.+.|. +.|+.+..
T Consensus 269 ~G-~e~i~~~~~~l~~~l~~~L~~~--g~~~~~~~~~~~s~~v~~~~~p~~~--------~~~~l~~~l~~~~~i~i~~G 337 (401)
T PLN02409 269 EG-LENVIARHARLGEATRLAVEAW--GLKLCTKKPEWRSDTVTAVVVPEGI--------DSAEIVKNAWKKYNLSLGLG 337 (401)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHc--CCeeccCChhhcccceEEEeCCCCC--------CHHHHHHHHHHhCCEEEEcC
Confidence 43 4556666666666665544321 12222211 11 2234445543221 1345666665 66999884
Q ss_pred ----cCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 822 ----LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 822 ----~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.+..+|+...-.++++++..++++|+++|.++.
T Consensus 338 ~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 338 LNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred CCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 357899987777899999999999999998753
No 245
>PRK05839 hypothetical protein; Provisional
Probab=99.29 E-value=2.5e-09 Score=121.34 Aligned_cols=328 Identities=10% Similarity=0.001 Sum_probs=188.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~AL 478 (863)
..+|+..|.. .++- .+.+.+++.+.......+....+..+....+++.+.+..+.+ ..+.+++++++++|...++
T Consensus 25 ~~i~l~~~~p--~~~~--~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~ 100 (374)
T PRK05839 25 KGLDLTIGEP--QFET--PKFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFP 100 (374)
T ss_pred CeEEcCCCCC--CCCC--CHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHH
Confidence 6788877543 3553 578888888766543322222223345556777776654421 1367999998888887777
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
++.+ . .+. ...|+...-+|.+....+...+
T Consensus 101 ~~~~--~-------~~~----------gd~vlv~~P~y~~~~~~~~~~g------------------------------- 130 (374)
T PRK05839 101 QFVL--F-------DKQ----------NPTIAYPNPFYQIYEGAAIASR------------------------------- 130 (374)
T ss_pred HHHh--c-------CCC----------CCEEEECCCCchhhHHHHHhcC-------------------------------
Confidence 6542 0 000 1467777777766533322111
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
+..+++|... ++.|. -| . .+..++ +.-+.+|+.| ++..|.+.
T Consensus 131 ~~v~~v~~~~---------------~~~~~--~d---~-------~~~~~~--------~~k~v~i~nP--~NPTG~~~- 172 (374)
T PRK05839 131 AKVLLMPLTK---------------ENDFT--PS---L-------NEKELQ--------EVDLVILNSP--NNPTGRTL- 172 (374)
T ss_pred CEEEEeeccc---------------ccCCc--CC---c-------chhhhc--------cccEEEEeCC--CCCcCccc-
Confidence 1111222100 00000 00 0 001111 1235566788 89999765
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc----C--CCCcEE---EeccccC-CCCCCceeeeccHHHH
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL----G--CVPDIA---CYGKLLT-GGVIPLAATLATNAVF 708 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~----g--v~PDiv---t~sKgLg-gG~~Pigav~~~~~i~ 708 (863)
+.+.+++|.++|++||+++|.||++..|...+.....-.. + -.+.++ +|||.++ .| +.+|+++++++++
T Consensus 173 s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G-lRiG~ii~~~~~~ 251 (374)
T PRK05839 173 SLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPG-LRSGFIAGDASIL 251 (374)
T ss_pred CHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCcc-ceeEEEecCHHHH
Confidence 6888999999999999999999999877322222111111 1 113444 6799864 56 8999999999999
Q ss_pred HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEE
Q 002941 709 DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCA 788 (863)
Q Consensus 709 ~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~ 788 (863)
+.+.... ...++..+.++.+++.+++. ++++.+++++..++.++.+. +.+ + +. ...-|.++.
T Consensus 252 ~~~~~~~------~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~----~~l---~-~~-~p~gg~fi~ 313 (374)
T PRK05839 252 KKYKAYR------TYLGCASPLPLQKAAAVAWL---DDEHAEFFRNIYAKNLKLAR----EIL---G-IT-IPPATFYVW 313 (374)
T ss_pred HHHHHHH------hhcCCCCChHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHH----Hhc---C-CC-CCCeeEEEE
Confidence 8875411 11233455566666665553 34445444444444333322 222 1 11 233466777
Q ss_pred EEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec---------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 789 IELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 789 iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~---------g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+.+.+ ..+++.+|++ +||.+.|+ .+.+|++. ..+++++.+++++|.++++
T Consensus 314 ~~~~~-----------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~--~~~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 314 LPVDN-----------DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIAL--VYDTPKLEKALEIIKTYLE 373 (374)
T ss_pred EeCCC-----------hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHhh
Confidence 77642 2467778875 99999873 15788864 4578999999999988764
No 246
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=99.29 E-value=2.5e-09 Score=122.65 Aligned_cols=210 Identities=10% Similarity=0.031 Sum_probs=126.6
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCCCCc-EE---EeccccC-C
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD-IA---CYGKLLT-G 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PD-iv---t~sKgLg-g 693 (863)
-+.+++.| ++..|.+. +.+-+++|.++|++||+++|.||++..|-..+.. -....+.-.++ ++ +|||.++ .
T Consensus 178 k~i~l~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~p 254 (409)
T PRK07590 178 DIIYLCFP--NNPTGTVL-TKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFT 254 (409)
T ss_pred eEEEEeCC--CCCcCCcC-CHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCc
Confidence 34556788 78999655 7888999999999999999999999877333321 11111111122 33 6899996 7
Q ss_pred CCCCceeeeccHHHHHhhhcCCcc-----ceeecccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHH
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKL-----KALLHGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~-----~~~~~~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l 767 (863)
| +.+|++++++++++.+...... .......++ +.+.++..++.++++- ....+.+++++..+..++.+
T Consensus 255 G-lRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~r~~l---- 328 (409)
T PRK07590 255 G-TRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSP-EGKAQIKELIDYYMENAKII---- 328 (409)
T ss_pred C-ceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHH----
Confidence 8 8999999999988733110000 000011222 3566777777666641 11233444444444444433
Q ss_pred HHHHhcCCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecC-------CEEEEecCCCCcHHH
Q 002941 768 IQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLG-------NVIYLMCGPCSSPEV 838 (863)
Q Consensus 768 ~~~~~~~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g-------~~lr~~ppl~~t~ee 838 (863)
.+.+..++ +....+. |.++.+.+.+.- ...+++..|+ ++||++.|+. +.+|+. ...++++
T Consensus 329 ~~~L~~~~-~~~~~~~g~~f~wi~~~~~~--------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~--~~~~~~~ 397 (409)
T PRK07590 329 REGLESAG-FEVYGGVNAPYIWVKTPDGM--------SSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLS--AFGSREN 397 (409)
T ss_pred HHHHHhcC-CceecCCcceEEEEECCCCC--------CHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEE--ccCCHHH
Confidence 33344443 2223343 567778775421 1356777776 5799998741 578886 3568899
Q ss_pred HHHHHHHHHHH
Q 002941 839 CSQLLLKLYQR 849 (863)
Q Consensus 839 id~~v~~L~~~ 849 (863)
+++++++|.++
T Consensus 398 l~~~l~rl~~~ 408 (409)
T PRK07590 398 VLEAMERIKKA 408 (409)
T ss_pred HHHHHHHHHhh
Confidence 99999998765
No 247
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=99.28 E-value=7.5e-10 Score=125.20 Aligned_cols=322 Identities=14% Similarity=0.098 Sum_probs=199.3
Q ss_pred CCCCCcHHHHHHHHHHHHhccccc--CCCC----CChHHHHHHHHHHhhcCCCCC-CeEEEeCChhhHHHHHHHHHHHHH
Q 002941 413 PDATLQIELARDMGYTAARFGHVM--FPEN----VYEPALECAELLLQGVGKGWA-SRAYFSDNGSTAIEIALKMAFRKF 485 (863)
Q Consensus 413 lGh~~~p~V~~Ai~~q~~~~~~~~--~~~~----~~~~~~eLae~L~~~~p~~~~-~~v~f~~SGSeAvE~ALklA~r~~ 485 (863)
.|. ..+.|.+++.+.+....... .... ..+...+..++|+++++.+ . +.++|+.++++|++.++.......
T Consensus 8 ~~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~-~~~~v~~~~~~t~a~~~~~~~l~~~~ 85 (371)
T PF00266_consen 8 TGP-MPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAP-PDEEVVFTSNGTEALNAVASSLLNPL 85 (371)
T ss_dssp S-B--BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSS-TTEEEEEESSHHHHHHHHHHHHHHHG
T ss_pred ccC-CCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCc-cccccccccccchhhhhhhhcccccc
Confidence 344 57889999999887643211 0111 1244567888888888854 3 579999999999999888763111
Q ss_pred HhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCc
Q 002941 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (863)
Q Consensus 486 ~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P 565 (863)
. . ..+|++....|++.......+.. .. +. .+..++.+
T Consensus 86 --~----~------------g~~vl~~~~~~~s~~~~~~~~~~---~~-----------g~-----------~v~~i~~~ 122 (371)
T PF00266_consen 86 --K----P------------GDEVLVTSNEHPSNRYPWEEIAK---RK-----------GA-----------EVRVIPAD 122 (371)
T ss_dssp --T----T------------TCEEEEEESSHHHHHHHHHHHHH---HT-----------TE-----------EEEEEEEG
T ss_pred --c----c------------ccccccccccccccccccccccc---cc-----------hh-----------hhcccccc
Confidence 1 1 25799999988886522211110 00 00 00111111
Q ss_pred chhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHH
Q 002941 566 EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (863)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~ 645 (863)
. +..-| .+.+++.+. .++..|++--+ ....|.+.| +++
T Consensus 123 ~---------------------~~~~~--------~~~~~~~l~--------~~~~lv~~~~~-~~~tG~~~p----i~~ 160 (371)
T PF00266_consen 123 P---------------------GGSLD--------LEDLEEALN--------PDTRLVSISHV-ENSTGVRNP----IEE 160 (371)
T ss_dssp T---------------------TSSCS--------HHHHHHHHH--------TTESEEEEESB-ETTTTBBSS----HHH
T ss_pred c---------------------cchhh--------hhhhhhhhc--------cccceEEeecc-cccccEEee----ece
Confidence 0 00011 245556663 45667777776 777898887 999
Q ss_pred HHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCccce----
Q 002941 646 LVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKA---- 719 (863)
Q Consensus 646 Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~~~---- 719 (863)
|.++|+++|+++++|=+| ++|.. ..-.+. ..+|++++| | |.|+ .-+|.+.++++..+.+........
T Consensus 161 I~~~~~~~~~~~~vD~~~-~~g~~--~id~~~--~~~D~~~~s~~K-l~gp-~G~g~l~v~~~~~~~~~p~~~~~~~~~~ 233 (371)
T PF00266_consen 161 IAKLAHEYGALLVVDAAQ-SAGCV--PIDLDE--LGADFLVFSSHK-LGGP-PGLGFLYVRPEAIERLRPAKPGGGYLDF 233 (371)
T ss_dssp HHHHHHHTTSEEEEE-TT-TTTTS--S--TTT--TTESEEEEESTS-TTSS-STEEEEEEEHHHHHHHHTSSSSSSTTTH
T ss_pred ehhhhhccCCceeEechh-ccccc--cccccc--cccceeeecccc-cCCC-Cchhhheehhhhhhcccccccccccccc
Confidence 999999999999999998 46443 223333 347999875 9 8876 568999999999988853211000
Q ss_pred e-ec-----c--cCC---CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE-----eccc
Q 002941 720 L-LH-----G--HSY---SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR-----VVAL 783 (863)
Q Consensus 720 ~-~~-----~--~T~---~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~-----vrg~ 783 (863)
. .. . .-| +.+..+..+..++++.+++.+ .++++++...+.+.+.+. +.+.+.+.- -.-.
T Consensus 234 ~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~l~~~~~~~----l~~~~~~~~~~~~~~~~~ 308 (371)
T PF00266_consen 234 PSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIG-IERIRERIRELAEYLREA----LEELPGIEVLGPDDEPRR 308 (371)
T ss_dssp HHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH----HHHTTTEEESSSSCGGBG
T ss_pred ccchhcccccccccccccceeeehhhhHHHHHhhhhccc-cccchhhhhhHHHHHHhh----hhcCCceeEeeecccccc
Confidence 0 00 0 001 246667777788899885433 456666666666655444 334454321 2345
Q ss_pred ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------------CCEEEEecCCCCcHHHHHHH
Q 002941 784 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQL 842 (863)
Q Consensus 784 Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------------g~~lr~~ppl~~t~eeid~~ 842 (863)
+.++.+.+.... ...+.+.|.++||.++.+ ++.+|+++....|++|||++
T Consensus 309 ~~i~~~~~~~~~---------~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 309 PSIVSFNLPGSD---------ADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp TTEEEEEETTSS---------HHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred cceEEEeecCCC---------HHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 778888885443 577888999999999872 27999999999999999975
No 248
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=99.28 E-value=1.9e-10 Score=130.78 Aligned_cols=236 Identities=15% Similarity=0.102 Sum_probs=142.9
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +.+++++||++|+..+++..++ .| .+||+. ..+||
T Consensus 50 r~~~p~~~~le~~la~l~g~---~~~~~~~sG~~Ai~~al~al~~---------~G------------d~Vl~~-~~~~~ 104 (380)
T TIGR01325 50 RYANPTVAAFEERIAALEGA---ERAVATATGMSAIQAALMTLLQ---------AG------------DHVVAS-RSLFG 104 (380)
T ss_pred cCCCchHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHhC---------CC------------CEEEEe-cCCcc
Confidence 45677889999999998873 5788999999999999975421 12 356664 45666
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.+...+.-.- ...+. .+.+++. .|
T Consensus 105 ~t~~~~~~~~-------------~~~g~-----------~v~~v~~--------------------------~d------ 128 (380)
T TIGR01325 105 STVGFISEIL-------------PRFGI-----------EVSFVDP--------------------------TD------ 128 (380)
T ss_pred hHHHHHHHHH-------------HHhCC-----------EEEEECC--------------------------CC------
Confidence 6543322100 00000 0001111 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. +++.+|++|.. .+..|...+ +++|.++|+++|+++|+||+++.+ .... -.
T Consensus 129 --~~~l~~~i~--------~~tklV~le~p-~np~g~~~d----l~~I~~la~~~gi~livD~a~~~~-~~~~-----pl 187 (380)
T TIGR01325 129 --LNAWEAAVK--------PNTKLVFVETP-SNPLGELVD----IAALAELAHAIGALLVVDNVFATP-VLQQ-----PL 187 (380)
T ss_pred --HHHHHHhcC--------CCceEEEEECC-CCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccc-ccCC-----ch
Confidence 133444442 24678999976 788887765 899999999999999999998532 1111 12
Q ss_pred CCCCcEEE--eccccCCCCCCc-eeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHH
Q 002941 679 GCVPDIAC--YGKLLTGGVIPL-AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (863)
Q Consensus 679 gv~PDivt--~sKgLggG~~Pi-gav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~ 755 (863)
...+|+++ ++|.++|+-..+ |++++++++++.+.... ..++. ..+|..++.++..++.+.. ..++..++
T Consensus 188 ~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~----~~~g~--~~~p~~a~~~l~~l~tl~~--r~~~~~~~ 259 (380)
T TIGR01325 188 KLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYL----RHTGP--AMSPFNAWVLLKGLETLSL--RMQKQFDS 259 (380)
T ss_pred hhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHH----HhhCC--CCCHHHHHHHHhccCcHHH--HHHHHHHH
Confidence 33579886 689998632444 67778888888765311 01222 3456666666666665532 23444555
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeeE------------------ecccceEEEEEEc
Q 002941 756 RRILRELWDLELIQQISSHRTVQR------------------VVALGTLCAIELQ 792 (863)
Q Consensus 756 ~~~l~~~l~~~l~~~~~~~p~v~~------------------vrg~Gl~~~iel~ 792 (863)
..++.++| +++|.|.. ..|.|.|+.+++.
T Consensus 260 a~~la~~L--------~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~ 306 (380)
T TIGR01325 260 ALAIAEWL--------QAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA 306 (380)
T ss_pred HHHHHHHH--------HcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC
Confidence 55554433 34443322 2467899999997
No 249
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=99.27 E-value=3.3e-09 Score=124.56 Aligned_cols=215 Identities=12% Similarity=0.099 Sum_probs=128.9
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hh-hh---cC---CCCcE----EEec
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TA-DL---LG---CVPDI----ACYG 688 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~-e~---~g---v~PDi----vt~s 688 (863)
+.+|+.| ++..|.+ .+.+.+++|.++|++||+++|.||++..+-..+..+ .. +. ++ ..||. -+||
T Consensus 202 ~l~l~nP--~NPTG~~-~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~S 278 (496)
T PLN02376 202 GLILTNP--SNPLGTM-LDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLS 278 (496)
T ss_pred EEEEcCC--CCCCCcc-CCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEecc
Confidence 4566777 7899965 478889999999999999999999998774444322 11 11 11 23452 2689
Q ss_pred cccC-CCCCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHh-HHHHHHHHHHHHHH
Q 002941 689 KLLT-GGVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN-IIPERRILRELWDL 765 (863)
Q Consensus 689 KgLg-gG~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~-l~~~~~~l~~~l~~ 765 (863)
|.++ .| +.+|++++ ++.+.+.+... . .....+.++..++.+.| +++++.++ +.++.+++++.. +
T Consensus 279 K~~glpG-lRvG~li~~~~~l~~~~~~~-------~-~~~~vs~~~Q~a~~~~L---~d~~~~~~~l~~~r~~l~~r~-~ 345 (496)
T PLN02376 279 KDMGLPG-FRVGIVYSFNDSVVSCARKM-------S-SFGLVSSQTQLMLASML---SDDQFVDNFLMESSRRLGIRH-K 345 (496)
T ss_pred ccCCCCc-ceEEEEEECCHHHHHHHHHH-------h-hcCCCCHHHHHHHHHHh---CChhHHHHHHHHHHHHHHHHH-H
Confidence 9996 78 89999998 56666655321 1 11124555555555544 45555332 222222222221 2
Q ss_pred HHHHHHhcCCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEecC-------CEEEEecCCCCcH
Q 002941 766 ELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPLG-------NVIYLMCGPCSSP 836 (863)
Q Consensus 766 ~l~~~~~~~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~g-------~~lr~~ppl~~t~ 836 (863)
.+.+.+.++. +..+.. -|+++.+++.... ..........++++.+.+ .||.+.|+. +.+|+... ..++
T Consensus 346 ~l~~~L~~~g-i~~~~~~aG~flwi~l~~~~-~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa-~~~~ 422 (496)
T PLN02376 346 VFTTGIKKAD-IACLTSNAGLFAWMDLRHLL-RDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFA-NMDD 422 (496)
T ss_pred HHHHHHHHCC-CcccCCCceEEEEEEchhhh-ccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEee-CCCH
Confidence 2233444443 223333 4588888885421 000001123567887776 599998741 56777532 2578
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 837 eeid~~v~~L~~~l~~l~ 854 (863)
+++++++++|.+++.+-.
T Consensus 423 ~~l~~al~rl~~~l~~~~ 440 (496)
T PLN02376 423 DTLHVALGRIQDFVSKNK 440 (496)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999987543
No 250
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=99.26 E-value=2.1e-09 Score=120.17 Aligned_cols=307 Identities=15% Similarity=0.132 Sum_probs=177.6
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
..+|+..+. +.++ -.|.+.+++.+.+.+... ..++..-..+|.+.|+++++-. .+.+++++++++++...++
T Consensus 19 ~~i~l~~~~--~~~~--~~~~~~~~~~~~~~~~~~---~~Y~~~g~~~lr~~ia~~~~~~-~~~I~~t~G~~~~l~~~~~ 90 (337)
T PRK03967 19 YRIWLDKNE--NPFD--LPEELKEEIFEELKRVPF---NRYPHITSDPLREAIAEFYGLD-AENIAVGNGSDELISYLVK 90 (337)
T ss_pred ceEEecCCC--CCCC--CCHHHHHHHHHHhhcCcc---ccCCCCCHHHHHHHHHHHhCcC-cceEEEcCCHHHHHHHHHH
Confidence 456666532 3455 368999999888754221 1233333456777777777533 3689999999998865544
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.. .| .+|++..-+|......+ ...| .
T Consensus 91 ~~-----------~g------------d~V~v~~P~y~~~~~~~-~~~g------------------------------~ 116 (337)
T PRK03967 91 LF-----------EG------------KHIVITPPTFGMYSFYA-KLNG------------------------------I 116 (337)
T ss_pred Hh-----------CC------------CeEEEeCCChHHHHHHH-HHcC------------------------------C
Confidence 22 12 46888888886432211 1101 0
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..+++|.. +.+ .-| .+.+++.+. ..-+.+++.| ++..|...+
T Consensus 117 ~~~~v~~~-----------------~~~--~~d--------~~~l~~~~~--------~~~~v~~~~P--~NPtG~~~~- 158 (337)
T PRK03967 117 PVIDVPLK-----------------EDF--TID--------GERIAEKAK--------NASAVFICSP--NNPTGNLQP- 158 (337)
T ss_pred eEEEeecC-----------------CCC--CcC--------HHHHHHhcc--------CCCEEEEeCC--CCCCCCCCC-
Confidence 00111100 000 001 122333221 1224567788 789997765
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcCC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDS 715 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~~ 715 (863)
.++|.+++ ++++++|+||++..|. ..... ......++++ +|||.++ .| +.+|++++++++++.+...
T Consensus 159 ---~~~l~~i~-~~~~~ii~De~y~~~~-~~~~~--~~~~~~~~vi~l~S~SK~~~l~G-lRiG~iv~~~~~i~~~~~~- 229 (337)
T PRK03967 159 ---EEEILKVL-ETGKPVVLDEAYAEFS-GKSLI--GLIDEYPNLILLRTFSKAFGLAG-IRAGYAIANEEIIDALYRI- 229 (337)
T ss_pred ---HHHHHHHH-hcCCEEEEECchhhhc-ccchH--HHHhhCCCEEEEecchHhhcchh-hhheeeecCHHHHHHHHhh-
Confidence 35667777 4799999999998873 11211 1112234554 5799998 88 8999999999999888642
Q ss_pred ccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC
Q 002941 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795 (863)
Q Consensus 716 ~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~ 795 (863)
..+++.+.++.+++.++|+ +.++..+..+.....++.+ .+.+.++. ..+.|.++.+.+
T Consensus 230 -------~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l----~~~L~~~~----~~~~~~~~~~~~---- 287 (337)
T PRK03967 230 -------KPPFSLNILTMKIVRLALD---HYDLIEERIDYIIKERERV----RRELGEYA----YPSDANFLLLKL---- 287 (337)
T ss_pred -------cCCCCCCHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHH----HHHhccCc----CCCCCcEEEEhH----
Confidence 1234557778888877775 3333322222222223322 22333321 234455555433
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEecC----CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRPLG----NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p~g----~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.+.+.|.++||.+++.+ +.+|+. ..+.++.++++++|++..+
T Consensus 288 -----------~~~~~l~~~gi~v~~~~~~~~~~~Ri~---~~~~~~~~~l~~~l~~~~~ 333 (337)
T PRK03967 288 -----------DAYDYLLENGIVVRKLSGRLEGHIRVT---VGKREENDEFIKALKEIKE 333 (337)
T ss_pred -----------HHHHHHHHCCEEEEeCCCCCCCeEEEe---cCCHHHHHHHHHHHHHHHH
Confidence 15788889999998642 578886 4467788888888877654
No 251
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=99.26 E-value=4.2e-09 Score=122.19 Aligned_cols=213 Identities=15% Similarity=0.174 Sum_probs=129.5
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch--hh---hcCC-C-Cc-EE---Eecc
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--AD---LLGC-V-PD-IA---CYGK 689 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a--~e---~~gv-~-PD-iv---t~sK 689 (863)
+.+++.| ++..|. +.+++.+++|.++|++||+++|+||++..+-..+..|. .+ ..+. . ++ ++ .|||
T Consensus 203 ~lll~nP--~NPtG~-~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK 279 (447)
T PLN02607 203 GVLITNP--SNPLGA-TVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSK 279 (447)
T ss_pred EEEEeCC--CCCcCc-ccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchh
Confidence 5666778 788885 55788999999999999999999999976422222221 11 1121 1 33 33 5799
Q ss_pred ccC-CCCCCceeeec-cHHHHHhhhcCCccceeecccCC-CccHHHHHHHHHHHHHhcChhhHH-hHHHHHHHHHHHHHH
Q 002941 690 LLT-GGVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSY-SAHALGCAAAAKSIKWFKDPQTNH-NIIPERRILRELWDL 765 (863)
Q Consensus 690 gLg-gG~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~-~~~pla~AAalAaL~~l~~~~l~~-~l~~~~~~l~~~l~~ 765 (863)
.+| .| +.+|++++ ++++...+... ..| ..+.++..++.+. ++++++.+ .+.++.+++++...
T Consensus 280 ~fg~~G-lRvG~ivs~n~~l~~~~~~~---------~~~~~~s~~~q~~~~~~---L~d~~~~~~~l~~~r~~l~~~~~- 345 (447)
T PLN02607 280 DLGLPG-FRVGTIYSYNDKVVTTARRM---------SSFTLVSSQTQHLLASM---LSDEEFTENYIRTNRERLRKRYE- 345 (447)
T ss_pred cCCCCc-ceEEEEEEcCHHHHHHHHHH---------hhcCCCCHHHHHHHHHH---hCCchhHHHHHHHHHHHHHHHHH-
Confidence 997 78 89999998 67777766531 122 2344454444443 44555542 23333333333221
Q ss_pred HHHHHHhcCCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEecC-------CEEEEecCCC-Cc
Q 002941 766 ELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPLG-------NVIYLMCGPC-SS 835 (863)
Q Consensus 766 ~l~~~~~~~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~g-------~~lr~~ppl~-~t 835 (863)
.+.+.+.+++ +..+++ -|+++.+++.+.-... ......+++..+++ +||++.|+. +.+|+. +. .+
T Consensus 346 ~~~~~L~~~g-i~~~~~~ag~fvw~~L~~~~~~~--~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~--fa~~~ 420 (447)
T PLN02607 346 MIVQGLRRAG-IECLKGNAGLFCWMNLSPLLETP--TREGELALWDSILREVKLNISPGSSCHCSEPGWFRVC--FANMS 420 (447)
T ss_pred HHHHHHHhCC-CCcccCCeeEEEEEEchHhhcCC--CchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEE--eccCC
Confidence 2234444443 223344 4788889886421000 01123567777765 799998742 567765 44 47
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002941 836 PEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 836 ~eeid~~v~~L~~~l~~l~~ 855 (863)
++++++++++|.+++.+-+.
T Consensus 421 ~~~l~~gl~Ri~~~l~~~~~ 440 (447)
T PLN02607 421 EDTLEVALKRIHRFMDRRKT 440 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999976544
No 252
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.25 E-value=1.5e-09 Score=123.89 Aligned_cols=203 Identities=13% Similarity=0.035 Sum_probs=112.2
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccc-ccccccCCcchhhhcCCCCcEE--EeccccCCCCCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIP 697 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~-TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~P 697 (863)
..+++.|. .+ ...+ +++|.++|++||+++|+||+| .|+...|... ..+. ..|++ +++|+++ | .+
T Consensus 164 ~v~~~~~~-~~---~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~--~~~~-~~dv~~~s~sK~l~-G-~~ 230 (402)
T cd00378 164 LIVAGASA-YP---RPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGVFP--NPLP-GADVVTTTTHKTLR-G-PR 230 (402)
T ss_pred EEEecCcc-cC---CCcC----HHHHHHHHHhcCCEEEEEccchhhhhhcccCC--Cccc-CCcEEEeccccCCC-C-CC
Confidence 44555774 33 3333 889999999999999999997 3432122111 1111 35766 5689994 4 67
Q ss_pred ceeeeccH-HHHHhhhcCCccceeecccCCC-ccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 698 LAATLATN-AVFDSFVGDSKLKALLHGHSYS-AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 698 igav~~~~-~i~~~l~~~~~~~~~~~~~T~~-~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
.|++++++ ++++.+.... ..+.++ .++...+++..++..+.+.. .++..+.....++.+.+. +.+++
T Consensus 231 gg~i~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~a~~~al~~~~~~~-~~~~~~~~~~~~~~l~~~----L~~~g 299 (402)
T cd00378 231 GGLILTRKGELAKKINSAV------FPGLQGGPHLHVIAAKAVALKEALEPE-FKAYAKQVVENAKALAEA----LKERG 299 (402)
T ss_pred ceEEEeccHHHHHHHHHHh------CccccCCchHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHH----HHhCC
Confidence 88888876 8888775321 111122 22333333333444332211 122223333333333222 23333
Q ss_pred C-eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe-----------cCCEEEEecCCC----CcHHHH
Q 002941 776 T-VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-----------LGNVIYLMCGPC----SSPEVC 839 (863)
Q Consensus 776 ~-v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p-----------~g~~lr~~ppl~----~t~eei 839 (863)
. +..-...+.++.+.+.+.. . ....+.+.|.++||++.+ ..+.+|+.+... ++++|+
T Consensus 300 ~~~~~~~~~~~~v~v~~~~~~----~---~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di 372 (402)
T cd00378 300 FKVVSGGTDNHLVLVDLRPKG----I---TGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEM 372 (402)
T ss_pred CeEeecCCCCeEEEEeCCccC----C---CHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHH
Confidence 2 1111123566667765321 0 123566678889999963 125788865543 479999
Q ss_pred HHHHHHHHHHHHHHH
Q 002941 840 SQLLLKLYQRLEEFD 854 (863)
Q Consensus 840 d~~v~~L~~~l~~l~ 854 (863)
+++++.|.+++.+=+
T Consensus 373 ~~~~~~l~~~~~~~~ 387 (402)
T cd00378 373 EEIADFIARALKDAE 387 (402)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999886533
No 253
>PRK06836 aspartate aminotransferase; Provisional
Probab=99.25 E-value=6.3e-09 Score=118.84 Aligned_cols=205 Identities=16% Similarity=0.105 Sum_probs=120.8
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHH------cCCeEEEecccccccccCCcchhhhcCCCCcEE---Eeccc
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQN------RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKL 690 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~------~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKg 690 (863)
+.+|++... ++..|... +.+.+++|.++|++ ||+++|.||++..|-..|.... ......++++ +|||.
T Consensus 169 ~~~v~~~~p-~NPtG~~~-~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~i~~~S~SK~ 245 (394)
T PRK06836 169 TKAVIINSP-NNPTGVVY-SEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVP-YIFKYYDNSIVVYSFSKS 245 (394)
T ss_pred ceEEEEeCC-CCCCCcCC-CHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCC-ChHHccCcEEEEecchhh
Confidence 344444433 78888655 67778999999999 9999999999987733332111 0011122333 57999
Q ss_pred cC-CCCCCceeeeccHHHHHh---hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHH
Q 002941 691 LT-GGVIPLAATLATNAVFDS---FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLE 766 (863)
Q Consensus 691 Lg-gG~~Pigav~~~~~i~~~---l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~ 766 (863)
++ .| +.+|++++++++.+. ...-.. ..........+++.+.++...++ +......+.+ .++.+
T Consensus 246 ~~~pG-lRiG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~----~r~~l--- 312 (394)
T PRK06836 246 LSLPG-ERIGYIAVNPEMEDADDLVAALVF--ANRILGFVNAPALMQRVVAKCLD---ATVDVSIYKR----NRDLL--- 312 (394)
T ss_pred ccCcc-eeeEEEecCHHHhhhHHHHHHHHH--HhhccccccCCHHHHHHHHHHhC---ChHHHHHHHH----HHHHH---
Confidence 98 78 899999999876432 110000 00001112445565555554443 3211222222 22222
Q ss_pred HHHHHhcCCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHH
Q 002941 767 LIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 767 l~~~~~~~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid 840 (863)
.+.++++. +...... |+++.+.+.... ..++++.|.++||.+.|. ++.+|+.. ..++++++
T Consensus 313 -~~~L~~~g-~~~~~~~gg~~~~~~~~~~~---------~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~--~~~~~~~~ 379 (394)
T PRK06836 313 -YDGLTELG-FECVKPQGAFYLFPKSPEED---------DVAFCEKAKKHNLLLVPGSGFGCPGYFRLSY--CVDTETIE 379 (394)
T ss_pred -HHHHHhCC-CEeecCCceEEEEEeCCCCC---------HHHHHHHHHhCCEEEECchhcCCCCeEEEEe--cCCHHHHH
Confidence 23334443 2222233 556666554321 456778889999999985 36788865 36899999
Q ss_pred HHHHHHHHHHHHH
Q 002941 841 QLLLKLYQRLEEF 853 (863)
Q Consensus 841 ~~v~~L~~~l~~l 853 (863)
+++++|.+++++.
T Consensus 380 ~~i~~l~~~l~~~ 392 (394)
T PRK06836 380 RSLPAFEKLAKEY 392 (394)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988654
No 254
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=99.24 E-value=1.6e-09 Score=122.35 Aligned_cols=194 Identities=16% Similarity=0.212 Sum_probs=126.7
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~ 696 (863)
+.+++.| ++..|.+. +.+-++++.+.|+ +++++|+||++..|..... .....+..++++ +|||.+| .| +
T Consensus 155 lv~l~~p--~NPTG~~~-~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~~~--~~~~~~~~~~vi~~~SfSK~~gl~G-l 227 (364)
T PRK04781 155 LVFLCSP--SNPAGSAI-ALDQIERALQALQ-GKALVVVDEAYGEFSDVPS--AVGLLARYDNLAVLRTLSKAHALAA-A 227 (364)
T ss_pred EEEEcCC--CCCCCCCc-CHHHHHHHHHhCC-CCcEEEEeCcchhhcCCcc--hHHHHhhCCCEEEEecChhhccccc-c
Confidence 4455566 78999776 5556667767664 4899999999987742111 112223345555 7899998 78 8
Q ss_pred CceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcCh--hhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDP--QTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~--~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
.+|++++++++++.+... ...++.+.++..++.++|+ +. ++..+..+..+..++.+ .+.++++
T Consensus 228 RvGy~v~~~~l~~~l~~~--------~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~~~r~~l----~~~L~~~ 292 (364)
T PRK04781 228 RIGSLIANAELIAVLRRC--------QAPYPVPTPCAALAEQALS---APALAVTARRVAEVRAERERL----HAALAQL 292 (364)
T ss_pred eeeeeeCCHHHHHHHHhc--------cCCCCCCHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 999999999999988752 2345667777777776664 32 12222222223333333 3444555
Q ss_pred CCee-EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec------CCEEEEecCCCCcHHHHHHHHHHHH
Q 002941 775 RTVQ-RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------GNVIYLMCGPCSSPEVCSQLLLKLY 847 (863)
Q Consensus 775 p~v~-~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~------g~~lr~~ppl~~t~eeid~~v~~L~ 847 (863)
+.+. .....|.++.+++.+ ..++.+.|.++||.++++ ++.+|+. ..++++.++++++|+
T Consensus 293 ~~~~~~~p~~g~f~~~~~~~-----------~~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris---~~~~~~~~~l~~al~ 358 (364)
T PRK04781 293 PGVRRVYPSQGNFLLVRFDD-----------AEAAFQALLAAGVVVRDQRAAPRLSDALRIT---LGTPEQNDRVLAALQ 358 (364)
T ss_pred CCCCeECCCCCcEEEEEcCC-----------HHHHHHHHHHCCeEEeeCCCCCCCCCeEEEe---CCCHHHHHHHHHHHH
Confidence 4432 345668888887741 346788899999999874 2678886 457888999999887
Q ss_pred HHH
Q 002941 848 QRL 850 (863)
Q Consensus 848 ~~l 850 (863)
+..
T Consensus 359 ~~~ 361 (364)
T PRK04781 359 RTQ 361 (364)
T ss_pred HHH
Confidence 643
No 255
>PLN02231 alanine transaminase
Probab=99.23 E-value=2.5e-09 Score=126.39 Aligned_cols=224 Identities=14% Similarity=0.050 Sum_probs=130.5
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccccccc-CCcc-hhhhc----CC---CCcEE---Ee
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL-GVET-TADLL----GC---VPDIA---CY 687 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRt-G~~~-a~e~~----gv---~PDiv---t~ 687 (863)
-+.+++.| ++..|. +.+.+-+++|.++|++||++||.|||+..+-.. |..+ .+..+ |. ...++ +|
T Consensus 273 k~ivl~nP--~NPTG~-vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~ 349 (534)
T PLN02231 273 RALVVINP--GNPTGQ-VLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSV 349 (534)
T ss_pred EEEEEeCC--CCCCCc-CCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEecc
Confidence 35577888 789995 557889999999999999999999999877432 3222 21111 21 12244 57
Q ss_pred ccccC--CCCCCceeeec---cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHh--cChhh---HHhHHHHHH
Q 002941 688 GKLLT--GGVIPLAATLA---TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWF--KDPQT---NHNIIPERR 757 (863)
Q Consensus 688 sKgLg--gG~~Pigav~~---~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l--~~~~l---~~~l~~~~~ 757 (863)
||++. .| +.+|++++ ++++++.+..- ...+...+.++.+++..+++-- .++.+ .+...+..+
T Consensus 350 SK~~~g~pG-lRiGy~~~~~~~~~l~~~l~k~-------~~~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~ 421 (534)
T PLN02231 350 SKGYYGECG-KRGGYMEVTGFTSDVREQIYKV-------ASVNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILS 421 (534)
T ss_pred CcccccCCc-cceEEEEEecCCHHHHHHHHHH-------HhhhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHH
Confidence 99874 47 89999976 68888887541 1223344556666666655310 01111 111111112
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEecccceEEEE-EEccCCc--CC--CCchHHHHHHHHHHH-HCCcEEEecC--------
Q 002941 758 ILRELWDLELIQQISSHRTVQRVVALGTLCAI-ELQAAGC--NA--GYGSLYAASLLKKLR-EDGVYMRPLG-------- 823 (863)
Q Consensus 758 ~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~i-el~~~~~--~~--~~~~~~~~~l~~~l~-e~GV~~~p~g-------- 823 (863)
.+++.. +.+.+.+.+++.+......|.|+.+ .+.-+.. .. .........++..|+ +.||.+.|+.
T Consensus 422 ~~~~r~-~~l~~~L~~~~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~ 500 (534)
T PLN02231 422 SLARRA-KTLEDALNSLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGT 500 (534)
T ss_pred HHHHHH-HHHHHHHhcCCCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCC
Confidence 222211 1233445556666666677776665 3321100 00 000001223556555 6799998742
Q ss_pred CEEEEecCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 002941 824 NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVE 857 (863)
Q Consensus 824 ~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~~~ 857 (863)
..+|++ +..+++++++++++|.+.++++-+.+
T Consensus 501 ~~~Rit--~~~~~e~l~eal~RL~~~~~~~~~~~ 532 (534)
T PLN02231 501 WHFRCT--ILPQEDKIPAIVSRLTEFHKSFMDEF 532 (534)
T ss_pred CeEEEE--eCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 247775 46789999999999999888765543
No 256
>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]
Probab=99.23 E-value=2e-09 Score=113.10 Aligned_cols=331 Identities=14% Similarity=0.082 Sum_probs=196.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
..+|+-|-..+.+ -.++.+|+.++.---... +..+-..+|+++.++++|+ +..+|++||+..|..|++
T Consensus 22 ~~vDLRSDTvT~P-----TdeMr~am~eA~vgDdVy----GeD~tt~rLE~~vA~l~GK---EAgLFv~SGTmgNllaIm 89 (384)
T KOG1368|consen 22 RSVDLRSDTVTVP-----TDEMRRAMAEASVGDDVY----GEDPTTNRLEQRVAELFGK---EAGLFVPSGTMGNLLAIM 89 (384)
T ss_pred eccccccccccCC-----hHHHHHHHhhcccCcccc----cCCccHHHHHHHHHHHhCc---cceeeecccccccHHHHH
Confidence 4456655444443 256777777664321111 2355678999999999995 679999999999999998
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCC-CccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS-YHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~s-YHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
.-. +++| ..||.=+.+ -|=+-.|+++. +. +
T Consensus 90 ~Hc----~~rg----------------~eii~gd~~HI~~~E~gg~s~-----l~------------------------g 120 (384)
T KOG1368|consen 90 VHC----HQRG----------------SEIIVGDRAHIHRYEQGGISQ-----LA------------------------G 120 (384)
T ss_pred HHh----cCCC----------------ceEEeccchheeehhccChhh-----hc------------------------c
Confidence 653 1222 345554333 22222222221 10 1
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
++..++- ..+|. . .-++++|+.+..---..+......|.+|-. +...|-.+.
T Consensus 121 v~~~tv~-----------------------~e~dg--t--m~ledIe~~ir~~~GD~H~p~T~LIclENT-~~~~Gg~vl 172 (384)
T KOG1368|consen 121 VHVRTVK-----------------------NENDG--T--MDLEDIEAAIRVPKGDCHMPPTKLICLENT-HNNCGGKVL 172 (384)
T ss_pred ceeEeee-----------------------eCCCC--e--eeHHHHHHhhcCCCCCccCCCceEEEeecc-ccccCceEe
Confidence 1111110 00110 0 003567777752100122334668889987 666666788
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-------CCcE--EEeccccCCCCCCceee-eccHHHH
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-------VPDI--ACYGKLLTGGVIPLAAT-LATNAVF 708 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-------~PDi--vt~sKgLggG~~Pigav-~~~~~i~ 708 (863)
|-+|+.++.++|++||+-|-+|-+. . |-|.-..|+ .-|- +||||||| .|+|-| +++++++
T Consensus 173 Ple~~~~v~~lak~~glkLH~DGAR-----i--~NAavasgV~vk~i~~~fDSVsiCLSKglg---APVGSViVG~k~FI 242 (384)
T KOG1368|consen 173 PLEELDRVKALAKRHGLKLHMDGAR-----I--FNAAVASGVPVKKICSAFDSVSICLSKGLG---APVGSVIVGSKDFI 242 (384)
T ss_pred eHHHHHHHHHHHhccCCeeecchhh-----h--hhHHHHcCCCHHHHHHhhhhhhhhhhccCC---CCcccEEEccHHHH
Confidence 9999999999999999999999442 2 233333343 3454 59999998 466655 5788887
Q ss_pred HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC-CeeEec-ccceE
Q 002941 709 DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR-TVQRVV-ALGTL 786 (863)
Q Consensus 709 ~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p-~v~~vr-g~Gl~ 786 (863)
+....-.+ ..|+-+.-.-+-||||+-+|+. .-..+....+++..+.+++ ...+ +-..|. -.-.|
T Consensus 243 ~kA~~~RK----alGGGmRQsGvLaaaaLval~~--~~~~L~~dHk~A~~lAe~~--------~~~~~i~v~v~a~etNi 308 (384)
T KOG1368|consen 243 DKARHFRK----ALGGGMRQSGVLAAAALVALDE--NVPLLRADHKRAKELAEYI--------NTPEEIRVEVPAVETNI 308 (384)
T ss_pred HHHHHHHH----HhcCchhHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHh--------ccccceeeecchhhcce
Confidence 75331111 1333444455677778877763 2223334444444444432 2333 222333 34457
Q ss_pred EEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 787 CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 787 ~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
..+++.... -.+..+++.+.+.||++.+.. .++|+....-+|+++++.++..+.+.+
T Consensus 309 v~~~l~q~~-------~~~~~l~~~~~k~gi~lm~~~s~r~Rivlh~Qvt~~~ve~~~~~~~k~~ 366 (384)
T KOG1368|consen 309 VNMVLCQAR-------LTAEELCKFLEKNGILLMGGASRRIRIVLHHQVTDEDVEYVKSVLSKKF 366 (384)
T ss_pred eeeeccccc-------CCHHHHHHHHHHCCeEEeeccccceEEEEEEecCHHHHHHHHHHHHHHH
Confidence 777775442 136778999999999988753 678888777889999999999995443
No 257
>PRK07908 hypothetical protein; Provisional
Probab=99.22 E-value=4.1e-09 Score=118.22 Aligned_cols=193 Identities=16% Similarity=0.123 Sum_probs=120.1
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~ 696 (863)
+.+++.| ++..|.+.+ .++|.++|++ ++++|+||++..| ..|........+ .++++ +|||.++ .| +
T Consensus 142 ~i~l~np--~NPTG~~~~----~~~l~~l~~~-~~~iIvDe~y~~~-~~~~~~~l~~~~-~~~~i~i~S~SK~~~l~G-l 211 (349)
T PRK07908 142 LVVIGNP--TNPTSVLHP----AEQLLALRRP-GRILVVDEAFADA-VPGEPESLAGDD-LPGVLVLRSLTKTWSLAG-L 211 (349)
T ss_pred EEEEcCC--CCCCCCCcC----HHHHHHHHhc-CCEEEEECcchhh-ccCCcccccccc-CCCEEEEeecccccCCcc-c
Confidence 4555678 789998876 3467778864 7889999999766 234321211122 23544 5699987 78 8
Q ss_pred CceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002941 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~ 776 (863)
.+|++++++++++.+.... ..+..+++..+++.+.++- ....+.+++++..+..++.+. +.+.++.
T Consensus 212 RiG~~~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~r~~l~----~~L~~~~- 277 (349)
T PRK07908 212 RVGYALGAPDVLARLTRGR--------AHWPVGTLQLEAIAACCAP-RAVAEAAADAARLAADRAEMV----AGLRAVG- 277 (349)
T ss_pred eeeeeecCHHHHHHHHhcC--------CCCCccHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHH----HHHHhCC-
Confidence 9999999999998876421 1234455555554444331 111223344444444444443 3333442
Q ss_pred eeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 777 VQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 777 v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
+.-.. ..|.++.+.+.+ ...+...|.++||.+.++ .+.+|++. .+++++++++++|++
T Consensus 278 ~~~~~p~~g~~~~~~~~~-----------~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~---~~~~~~~~l~~al~~ 343 (349)
T PRK07908 278 ARVVDPAAAPFVLVRVPD-----------AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAV---RPRAEVPVLVQALAE 343 (349)
T ss_pred cEeccCCCceEEEEECCc-----------HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEe---CCCccHHHHHHHHHH
Confidence 22222 457777776642 346778888999999873 26888873 578899999999987
Q ss_pred HHH
Q 002941 849 RLE 851 (863)
Q Consensus 849 ~l~ 851 (863)
.+.
T Consensus 344 ~~~ 346 (349)
T PRK07908 344 ILK 346 (349)
T ss_pred HHh
Confidence 654
No 258
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=99.21 E-value=4.6e-09 Score=120.00 Aligned_cols=198 Identities=15% Similarity=0.122 Sum_probs=113.4
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccccccc-CC-cchhhh-cCCCCcEE---EeccccC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL-GV-ETTADL-LGCVPDIA---CYGKLLT 692 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRt-G~-~~a~e~-~gv~PDiv---t~sKgLg 692 (863)
++.-++..| ++..|.. .+.+.+++|.++|++||+++|.||++..|... +. ...... .+..++++ +|||.++
T Consensus 173 ~~~~i~~~p--~NPTG~~-~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~ 249 (396)
T PRK09257 173 DVVLLHGCC--HNPTGAD-LTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFG 249 (396)
T ss_pred CEEEEeCCC--CCCCCCC-CCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCc
Confidence 333334555 8999965 48888999999999999999999999888532 11 111111 11223444 6799998
Q ss_pred C-CCCCceeeec---cHHH----HHhhhcCCccceeecccCCC-ccHHHHHHHHHHHHHhcChh-------hHHhHHHHH
Q 002941 693 G-GVIPLAATLA---TNAV----FDSFVGDSKLKALLHGHSYS-AHALGCAAAAKSIKWFKDPQ-------TNHNIIPER 756 (863)
Q Consensus 693 g-G~~Pigav~~---~~~i----~~~l~~~~~~~~~~~~~T~~-~~pla~AAalAaL~~l~~~~-------l~~~l~~~~ 756 (863)
- | +.+|++++ +++. +..+.. ....++. .++++..++.+.|+ +.+ ..+++++..
T Consensus 250 ~~G-lRiG~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~~ 318 (396)
T PRK09257 250 LYG-ERVGALSVVAEDAEEADRVLSQLKA-------TIRTNYSNPPAHGAAIVATILN---DPELRAEWEAELEEMRERI 318 (396)
T ss_pred ccc-ccceeEEEEeCCHHHHHHHHHHHHH-------HhhhhcCCCcHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHH
Confidence 4 8 89999873 4443 333321 0112222 35666666555553 321 222333333
Q ss_pred HHHHHHHHHHHHHHHhcCC---CeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCC
Q 002941 757 RILRELWDLELIQQISSHR---TVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGP 832 (863)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p---~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl 832 (863)
+..++.+. +.+.++. .+...... |+++.+.+. ...+.+.+.++||++.|.+ ||.. .
T Consensus 319 ~~rr~~l~----~~L~~~~~~~~~~~~~p~gg~~~w~~l~------------~~~~~~l~~~~~V~~~p~~---ri~~-~ 378 (396)
T PRK09257 319 KAMRQLLV----EALKAKGPSRDFDFIARQRGMFSYSGLT------------PEQVDRLREEFGVYAVGSG---RINV-A 378 (396)
T ss_pred HHHHHHHH----HHHHhcCCCCCcccccccceEEEecCCC------------HHHHHHHHHcCCEEEcCCC---eEEE-e
Confidence 34444333 3333332 12222333 455556542 1223444567899998865 4432 1
Q ss_pred CCcHHHHHHHHHHHHHHH
Q 002941 833 CSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 833 ~~t~eeid~~v~~L~~~l 850 (863)
+.++++|++++++|.+++
T Consensus 379 ~~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 379 GLNESNIDYVAEAIAAVL 396 (396)
T ss_pred eCCHHHHHHHHHHHHhhC
Confidence 489999999999998753
No 259
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.21 E-value=4e-09 Score=117.61 Aligned_cols=185 Identities=14% Similarity=0.045 Sum_probs=106.6
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-CCcEE--EeccccCCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIA--CYGKLLTGGVI 696 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDiv--t~sKgLggG~~ 696 (863)
...++..| .+..|.+.+ +++|.++|++||+++++|+++.++............++ ..|.+ ++.|.++++ .
T Consensus 150 ~~v~~~~~--~~~tG~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p-~ 222 (345)
T cd06450 150 IMVVATAG--TTDTGAIDP----LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVP-L 222 (345)
T ss_pred EEEEEecc--cCCCCCCCC----HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCC-c
Confidence 34455666 466777654 89999999999999999999965421111111001111 35755 457988765 4
Q ss_pred CceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002941 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~ 776 (863)
..|+++.+ +++..++++.+....+ ++..+....+.+.+. +.+.+.+.
T Consensus 223 g~g~~~~~----------------------------~~~~~~~l~~l~~~g~-~~~~~~~~~~~~~l~----~~L~~~~~ 269 (345)
T cd06450 223 GCSAVLVR----------------------------ALKLWATLRRFGRDGY-GEHIDRIVDLAKYLA----ELIRADPG 269 (345)
T ss_pred chHHHHHH----------------------------HHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHH----HHHhcCCC
Confidence 55555444 3344455555544332 233333333444333 33444554
Q ss_pred eeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe-c----CCEEEEecCCCC-cHHHHHHHHHHHHH
Q 002941 777 VQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-L----GNVIYLMCGPCS-SPEVCSQLLLKLYQ 848 (863)
Q Consensus 777 v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p-~----g~~lr~~ppl~~-t~eeid~~v~~L~~ 848 (863)
+.-+ ...+.++.+.+.... .......++.+.|.++|+++.+ . +..+|+++...+ |++|+|++++.|++
T Consensus 270 ~~~~~~~~~~iv~f~~~~~~----~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 270 FELLGEPNLSLVCFRLKPSV----KLDELNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred eEEecCCceeEEEEEECCcc----hhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 3222 124456666665320 0012356788899999655433 1 368899877664 99999999999875
No 260
>PTZ00376 aspartate aminotransferase; Provisional
Probab=99.21 E-value=3e-09 Score=121.93 Aligned_cols=202 Identities=13% Similarity=0.163 Sum_probs=119.8
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC---cchhhhc-CCCCcEE---Eecccc
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL-GCVPDIA---CYGKLL 691 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~---~~a~e~~-gv~PDiv---t~sKgL 691 (863)
+...++..| ++..|... +.+.+++|.++|++||+++|.||++..|-..+. .-....+ ...++++ +|||.+
T Consensus 177 ~~~~~~~~p--~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~ 253 (404)
T PTZ00376 177 SVVLLHACA--HNPTGVDP-TEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNM 253 (404)
T ss_pred CEEEEeCCC--CCCCCCCC-CHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcc
Confidence 344445667 89999655 788899999999999999999999987743221 1011111 1122344 679999
Q ss_pred C-CCCCCceee---eccHHHHHhhhcCCccceeecccCCC-ccHHHHHHHHHHHHHhcChh----hHHhHHH---HHHHH
Q 002941 692 T-GGVIPLAAT---LATNAVFDSFVGDSKLKALLHGHSYS-AHALGCAAAAKSIKWFKDPQ----TNHNIIP---ERRIL 759 (863)
Q Consensus 692 g-gG~~Pigav---~~~~~i~~~l~~~~~~~~~~~~~T~~-~~pla~AAalAaL~~l~~~~----l~~~l~~---~~~~l 759 (863)
+ .| +.+|++ ++++++.+.+...-. ....+++. .++++..++.++|+ +++ +.+.+.+ ..+..
T Consensus 254 ~~~G-lRvG~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~ 326 (404)
T PTZ00376 254 GLYG-ERIGALHIVCANKEEAANVLSQLK---LIIRPMYSSPPIHGARIADRILS---DPELRAEWLSELKEMSGRIQNM 326 (404)
T ss_pred cccc-cccceEEEEeCCHHHHHHHHHHHH---HHHhhhcCCCchHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHH
Confidence 8 78 899998 578876554432100 01123333 35677777776664 332 2222322 22333
Q ss_pred HHHHHHHHHHHHhcCC---CeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEecCCEEEEecCCCC
Q 002941 760 RELWDLELIQQISSHR---TVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPLGNVIYLMCGPCS 834 (863)
Q Consensus 760 ~~~l~~~l~~~~~~~p---~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~g~~lr~~ppl~~ 834 (863)
++.+ .+.+.++. ....+...| +++.+.+. .+++..|.++ ||++.|.+ |++.. ..
T Consensus 327 r~~l----~~~L~~~~~~~~~~~~~p~gg~f~~~~~~-------------~~~~~~L~~~~~v~v~p~~---Ris~~-~~ 385 (404)
T PTZ00376 327 RQLL----YDELKALGSPGDWEHIINQIGMFSFTGLT-------------KEQVERLIEKYHIYLLDNG---RISVA-GL 385 (404)
T ss_pred HHHH----HHHHHhcCCCCcccccccCceEEEecCCC-------------HHHHHHHHHhCCEeecCCC---eEEEe-cc
Confidence 3333 33333332 122223444 44444431 2467777766 99999875 55421 37
Q ss_pred cHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~ 851 (863)
+.+++++++++|++++.
T Consensus 386 ~~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 386 TSKNVDYVAEAIHDVVR 402 (404)
T ss_pred CHHhHHHHHHHHHHHHh
Confidence 99999999999998765
No 261
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=99.21 E-value=1.1e-08 Score=117.71 Aligned_cols=211 Identities=16% Similarity=0.089 Sum_probs=129.7
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccCCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLTGGVI 696 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLggG~~ 696 (863)
.+.+++.| ++..|.+. +.+-+++|.++|++||+++|.||++.-+ .....+....-...+.++ +|||....| +
T Consensus 181 ~~i~l~~P--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~Y~~~-~~~~~~~~~~~~~~~~vI~~~SfSK~~~pG-l 255 (416)
T PRK09440 181 GAICVSRP--TNPTGNVL-TDEELEKLDALARQHNIPLLIDNAYGPP-FPGIIFSEATPLWNPNIILCMSLSKLGLPG-V 255 (416)
T ss_pred eEEEEecC--CCCCCccC-CHHHHHHHHHHHHHcCCcEEEeCCcccc-CCCcchhhcCccccCCeEEEecccccCCCc-c
Confidence 45666677 78999665 7888999999999999999999999422 111100000001123333 689976677 8
Q ss_pred CceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH----HHHHHHHHHHHHHHHHHh
Q 002941 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP----ERRILRELWDLELIQQIS 772 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~----~~~~l~~~l~~~l~~~~~ 772 (863)
.+|++++++++++.+... ......+.+.++..++.+.|+ +.++...+.+ .-+..++.+.+.+.+.+.
T Consensus 256 RiG~~i~~~~l~~~~~~~------~~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~ 326 (416)
T PRK09440 256 RCGIVIADEEIIEALSNM------NGIISLAPGRLGPAIAAEMIE---SGDLLRLSETVIRPFYRQKVQLAIALLRRYLP 326 (416)
T ss_pred eEEEEeCCHHHHHHHHHH------HHHhccCCCcHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999887641 112234557777777777664 3333333222 112222222222222222
Q ss_pred cCCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----C---------CEEEEecCCCCcHH
Q 002941 773 SHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----G---------NVIYLMCGPCSSPE 837 (863)
Q Consensus 773 ~~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g---------~~lr~~ppl~~t~e 837 (863)
... +.-+... |.++.+++.... . ...++.+.|.++||.+.|+ + +.+|+.. +.+++
T Consensus 327 ~~~-~~~~~p~gg~fiw~~~~~~~----~---~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~--~~~~~ 396 (416)
T PRK09440 327 DEP-CLIHKPEGAIFLWLWFKDLP----I---TTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNY--VQDDE 396 (416)
T ss_pred cCC-eEEecCCCceEEEEECCCCC----C---CHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEe--cCCHH
Confidence 221 2223444 677778775411 0 1456778889999999873 1 2578753 35789
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002941 838 VCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 838 eid~~v~~L~~~l~~l~ 854 (863)
++++++++|.+++++..
T Consensus 397 ~l~~~i~~l~~~~~~~~ 413 (416)
T PRK09440 397 EIEKGIAILAEEVEKAY 413 (416)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999887643
No 262
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=99.21 E-value=1.4e-08 Score=118.67 Aligned_cols=213 Identities=15% Similarity=0.154 Sum_probs=128.6
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch--hhhc------CC--CCcEE---Ee
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--ADLL------GC--VPDIA---CY 687 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a--~e~~------gv--~PDiv---t~ 687 (863)
+.+++.| ++..|.. .+.+.+++|.++|++||+++|.||++..+-..+..+. .... +. .+.++ +|
T Consensus 194 ~v~l~nP--~NPTG~~-~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~ 270 (468)
T PLN02450 194 GVLITNP--SNPLGTT-TTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSL 270 (468)
T ss_pred EEEEecC--CCCCCcc-cCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEec
Confidence 4566778 7888855 5788899999999999999999999987643443221 1111 11 12233 78
Q ss_pred ccccC-CCCCCceeeeccHH-HHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHH-hHHHHHHHHHHHHH
Q 002941 688 GKLLT-GGVIPLAATLATNA-VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNH-NIIPERRILRELWD 764 (863)
Q Consensus 688 sKgLg-gG~~Pigav~~~~~-i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~-~l~~~~~~l~~~l~ 764 (863)
||.++ .| +.+|+++++++ +.+.+... ..+ ...+.++..++.+.|+ ++++.. .+.++.+++++..
T Consensus 271 SK~~~l~G-lRiG~li~~~~~l~~~~~~~-------~~~-~~~s~~~Q~a~~~~L~---~~~~~~~~l~~~~~~l~~rr- 337 (468)
T PLN02450 271 SKDLGLPG-FRVGAIYSNDEMVVSAATKM-------SSF-GLVSSQTQYLLSALLS---DKKFTKNYLEENQKRLKQRQ- 337 (468)
T ss_pred cccCCCCC-ccEEEEEECCHHHHHHHHHH-------hhc-CCCCHHHHHHHHHHhC---CchhHHHHHHHHHHHHHHHH-
Confidence 99997 88 89999999744 55655421 111 1245666666666654 443322 2233333333222
Q ss_pred HHHHHHHhcCCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecC-------CEEEEecCCC-C
Q 002941 765 LELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLG-------NVIYLMCGPC-S 834 (863)
Q Consensus 765 ~~l~~~~~~~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g-------~~lr~~ppl~-~ 834 (863)
+.+.+.+.++. +..+.. -|+++.+.+........+ ....+++..++ ++||.+.|+. +.+|+. ++ .
T Consensus 338 ~~l~~~L~~~g-i~~~~~~~g~flwi~l~~~~~~~~~--~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~--f~~~ 412 (468)
T PLN02450 338 KKLVSGLEAAG-IKCLKSNAGLFCWVDMRHLLKSNTF--EAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVC--FANM 412 (468)
T ss_pred HHHHHHHHHcC-CcccCCCceEEEEEEchHhcCcCCc--hHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEE--ecCC
Confidence 12334444443 222333 466778887532101111 12345666666 5799998752 567775 44 5
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~~l~ 854 (863)
+++++++++++|.+++.+..
T Consensus 413 ~~~~l~~~l~ri~~~l~~~~ 432 (468)
T PLN02450 413 SEETLDLAMKRLKSFVESDS 432 (468)
T ss_pred CHHHHHHHHHHHHHHHHhcc
Confidence 78999999999999987654
No 263
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=99.20 E-value=1.5e-08 Score=118.04 Aligned_cols=343 Identities=17% Similarity=0.173 Sum_probs=214.0
Q ss_pred eEEeeecccccc-cCCCCCcHHHHHHHHHHHHhcccc-----cCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhh
Q 002941 400 QQFDACASWWTQ-GPDATLQIELARDMGYTAARFGHV-----MFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGST 472 (863)
Q Consensus 400 ~ylD~~sg~~~~-~lGh~~~p~V~~Ai~~q~~~~~~~-----~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSe 472 (863)
..+|+..|+-.. .+ ....+.+++.+.+...... ....+..+....+++.+...-+-. ..+.++.+++..+
T Consensus 90 ~~i~f~~g~p~~~~f---p~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~ 166 (459)
T COG1167 90 SVIDFAGGLPDPSLF---PLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQ 166 (459)
T ss_pred ceecCCCCCCCcccC---CHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHH
Confidence 677887776322 23 3456666666655433222 111223355567777776322211 1357999988888
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCc
Q 002941 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (863)
Q Consensus 473 AvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (863)
|.+..+++..+ +| ..|++=+-+|||.....-..
T Consensus 167 al~l~~~~l~~---------pG------------d~v~vE~PtY~~~~~~~~~~-------------------------- 199 (459)
T COG1167 167 ALDLLLRLLLD---------PG------------DTVLVEDPTYPGALQALEAL-------------------------- 199 (459)
T ss_pred HHHHHHHHhCC---------CC------------CEEEEcCCCcHHHHHHHHHc--------------------------
Confidence 99987776621 12 57888888999863221111
Q ss_pred ccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 002941 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (863)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~ 632 (863)
|+..+++|-.. ..-| .+.+|+.+.+ .++-++.+-|..|+.
T Consensus 200 -----g~~~~~vp~d~--------------------~G~~--------~e~le~~~~~-------~~~k~~y~~P~~qNP 239 (459)
T COG1167 200 -----GARVIPVPVDE--------------------DGID--------PEALEEALAQ-------WKPKAVYVTPTFQNP 239 (459)
T ss_pred -----CCcEEecCCCC--------------------CCCC--------HHHHHHHHhh-------cCCcEEEECCCCCCC
Confidence 11112233100 0111 2456666653 367899999998999
Q ss_pred CCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcCCCCc----EEEeccccCCCCCCceeeeccHHH
Q 002941 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD----IACYGKLLTGGVIPLAATLATNAV 707 (863)
Q Consensus 633 gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PD----ivt~sKgLggG~~Pigav~~~~~i 707 (863)
.|..+ +.+=-++|.++|++||+++|=||++.-|-..+..- ....++- ++ +-+|||.|.-| +.+|++++++++
T Consensus 240 tG~tm-s~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~-~~rViy~gSFSK~l~Pg-lRlG~vv~p~~~ 316 (459)
T COG1167 240 TGVTM-SLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDA-PGRVIYLGSFSKTLAPG-LRLGYVVAPPEL 316 (459)
T ss_pred CCCcc-CHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCC-CCCEEEEeeehhhcccc-cceeeeeCCHHH
Confidence 99766 66778999999999999999999998774343321 1222221 33 34899999999 899999999999
Q ss_pred HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC-C-CeeEe-cccc
Q 002941 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH-R-TVQRV-VALG 784 (863)
Q Consensus 708 ~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~-p-~v~~v-rg~G 784 (863)
++.+... .+..+.+.+.+..++...-|. +..+..++.+.-+..+++.. .+.+.+.++ | .+.-. ..-|
T Consensus 317 ~~~~~~~------k~~~~~~~s~~~Q~~la~~l~---~G~~~~hl~~lR~~y~~rr~-~l~~~L~~~~~~~~~~~~p~gG 386 (459)
T COG1167 317 IEKLLRL------KQAADLGPSSLSQAALAAFLL---SGHYDRHLRRLRREYARRRD-ALLEALAEYLPELATWTRPEGG 386 (459)
T ss_pred HHHHHHH------HHHhcCCCChHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCeeeecCCce
Confidence 9988642 244566667777665555444 33333343333333333222 233444444 3 33322 2347
Q ss_pred eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec----------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 785 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 785 l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~----------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+++.+++...- ....+...++++||.+.|. .+.+|+.. ...+++++++.++.|.+++.+..
T Consensus 387 ~flwl~l~~~~--------~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~-s~~~~e~i~~gi~~l~~~~~~~~ 457 (459)
T COG1167 387 LFLWLELPEGI--------DARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSF-SSPSEEEIEEGIKRLAALLREAA 457 (459)
T ss_pred EEEEEEcCCCC--------CHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999998652 2678999999999999872 25788863 35578999999999999887654
No 264
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.6e-08 Score=115.55 Aligned_cols=340 Identities=12% Similarity=0.104 Sum_probs=209.9
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccC-CC-----CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF-PE-----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~-~~-----~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeA 473 (863)
-|+|..+ .+. ....|.+|+.+...++.-... .. ..++...+.-++++++++....+.+.|+.+-++|
T Consensus 24 vylD~aa------~~~-~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~a 96 (405)
T COG0520 24 VYLDNAA------TSQ-KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEA 96 (405)
T ss_pred EEecCcc------ccc-CCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHH
Confidence 5777443 222 467888888887765432211 11 1123345566677777774323679999999998
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcc
Q 002941 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (863)
Q Consensus 474 vE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (863)
.-......-+.. . . ...||+..--+|....-...+.... |.
T Consensus 97 ln~va~~l~~~~--~----~------------gdeIv~s~~EH~sn~~pw~~~~~~~--------------Ga------- 137 (405)
T COG0520 97 LNLVARGLGRSL--K----P------------GDEIVVSDLEHHSNIVPWQELAKRT--------------GA------- 137 (405)
T ss_pred HHHHHHHhhhhh--c----C------------CCEEEEccCcchhhHHHHHHHHHhc--------------Cc-------
Confidence 877666441111 0 1 1579998888888755443332100 00
Q ss_pred cccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
.+..++..+.. .-+ .+.++..+ .++.-.|.+.-+ .+..
T Consensus 138 ----~v~~i~~~~~g---------------------~~~--------~~~~~~~i--------~~~Tklvais~v-Sn~t 175 (405)
T COG0520 138 ----KVRVIPLDDDG---------------------LLD--------LDALEKLI--------TPKTKLVALSHV-SNVT 175 (405)
T ss_pred ----EEEEEecCCCC---------------------CcC--------HHHHHHhc--------CCCceEEEEECc-cccc
Confidence 01111111000 000 13344433 345667888887 8888
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhh
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l 711 (863)
|.+.| +++|.++|+++|+++++|=+|+ +|-. -.+.-.+..|.++|| |+|.|- ..+|...+++++.+.+
T Consensus 176 G~~~p----v~~I~~la~~~ga~v~VDaaq~-~~h~----~idv~~l~~Df~afsgHKwl~gP-~GiGvLy~r~~~l~~l 245 (405)
T COG0520 176 GTVNP----VKEIAELAHEHGALVLVDAAQA-AGHL----PIDVQELGCDFLAFSGHKWLLGP-TGIGVLYVRKELLEEL 245 (405)
T ss_pred cccch----HHHHHHHHHHcCCEEEEECccc-cCcc----CCCchhcCCCEEEEcccccccCC-CceEEEEEchHHHhhc
Confidence 98888 9999999999999999999984 4311 111122357999997 888875 5689999999999987
Q ss_pred hcC---Cccc--eee-cccCC----------CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 712 VGD---SKLK--ALL-HGHSY----------SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 712 ~~~---~~~~--~~~-~~~T~----------~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
.+. .... ... ...++ +.|..+..+..++++++++-+ .+++.+..+.+.+++ .+.+++.|
T Consensus 246 ~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig-~~~i~~~e~~L~~~~----~~~L~~~~ 320 (405)
T COG0520 246 EPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIG-MEAIEAHERELTEYL----LEGLSELP 320 (405)
T ss_pred CCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHh-HHHHHHHHHHHHHHH----HHHHhcCC
Confidence 321 1000 000 11122 234555555678888876544 455666666666544 45566677
Q ss_pred CeeEec----ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-------------CEEEEecCCCCcHHH
Q 002941 776 TVQRVV----ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-------------NVIYLMCGPCSSPEV 838 (863)
Q Consensus 776 ~v~~vr----g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-------------~~lr~~ppl~~t~ee 838 (863)
.+.-.. .++.++.+.+.... ..+++..|.++||.++... ..+|+++.+..|+||
T Consensus 321 ~v~i~g~~~~~r~~~vsF~v~~~~---------~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~ed 391 (405)
T COG0520 321 GVEIYGPPDADRGGIVSFNVKGIH---------PHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEED 391 (405)
T ss_pred CeEEecCCcccCceEEEEEeCCCC---------HHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCCHHH
Confidence 543221 35677777776542 6789999999998888642 239999999999999
Q ss_pred HHHHHHHHHHHHH
Q 002941 839 CSQLLLKLYQRLE 851 (863)
Q Consensus 839 id~~v~~L~~~l~ 851 (863)
||+++++|++...
T Consensus 392 id~l~~aL~~~~~ 404 (405)
T COG0520 392 VDRLLEALKKALA 404 (405)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988764
No 265
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=99.20 E-value=2.8e-09 Score=119.92 Aligned_cols=193 Identities=16% Similarity=0.172 Sum_probs=119.1
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~ 696 (863)
..+|+.| ++..|.+.+ .+.+++|.+.|+ ++++|+||++..|... . .........+.++ +|||.++ .| +
T Consensus 150 li~i~nP--~NPTG~~~~-~~~l~~l~~~~~--~~~vivDeay~~~~~~-~-s~~~~~~~~~~~iv~~S~SK~~~l~G-l 221 (354)
T PRK04635 150 LVFICNP--NNPTGTVID-RADIEQLIEMTP--DAIVVVDEAYIEFCPE-Y-SVADLLASYPNLVVLRTLSKAFALAG-A 221 (354)
T ss_pred EEEEeCC--CCCCCccCC-HHHHHHHHHhCC--CcEEEEeCchHhhccC-c-chHHHHhhCCCEEEEechHHHhhhhH-H
Confidence 4566677 799997774 555555555554 5999999999877421 1 1111112234544 6799987 67 7
Q ss_pred CceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002941 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~ 776 (863)
.+|++++++++++.+... ...++.+....+++.++|+.- ..+...+..+..+..++. +.+.+.+++.
T Consensus 222 RlG~~i~~~~~~~~l~~~--------~~~~~~~~~~~~~a~~~l~~~-~~~~~~~~~~~~~~~r~~----l~~~L~~~~~ 288 (354)
T PRK04635 222 RCGFTLANEELIEILMRV--------IAPYPVPLPVSEIATQALSEA-GLARMKFQVLDLNAQGAR----LQAALSMYGG 288 (354)
T ss_pred HHhhhhCCHHHHHHHHhh--------cCCCCCCHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHH----HHHHHHhCCC
Confidence 999999999999887631 123445556666666666421 111122222222222333 3344455553
Q ss_pred eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-----CEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 777 VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 777 v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-----~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
+......|.++.+.+.+ ...+.+.|.++||.++..+ +.+|++ ..+++++++++++|++
T Consensus 289 ~~~~~~~g~f~~~~~~~-----------~~~~~~~l~~~gv~v~~~~~~~~~~~lRis---~~~~e~~~~l~~al~~ 351 (354)
T PRK04635 289 AKVLEGNGNYVLAKFDD-----------VDAVFKALWDAGIVARAYKDPRLANCIRFS---FSNRAETDKLIGLIRN 351 (354)
T ss_pred ceECCCCCcEEEEECCC-----------HHHHHHHHHHCCEEEEECCCCCCCCeEEEE---eCCHHHHHHHHHHHHH
Confidence 33345567777776641 3467788999999998642 578987 4588999999998865
No 266
>PRK14012 cysteine desulfurase; Provisional
Probab=99.19 E-value=1.8e-08 Score=115.39 Aligned_cols=333 Identities=13% Similarity=0.076 Sum_probs=178.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHH---hcccccCC----CC-CChHHHHHHHHHHhhcCCCCCCeEEEeCChh
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAA---RFGHVMFP----EN-VYEPALECAELLLQGVGKGWASRAYFSDNGS 471 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~---~~~~~~~~----~~-~~~~~~eLae~L~~~~p~~~~~~v~f~~SGS 471 (863)
-|+|..+ .+- -++.+.+|+.+.+. .+...... .. ..+...++.++++++++.+ .+.++|++||+
T Consensus 5 iyld~a~------~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~-~~~v~~~~g~t 76 (404)
T PRK14012 5 IYLDYSA------TTP-VDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGAD-PREIVFTSGAT 76 (404)
T ss_pred EEecCcC------CCC-CCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcC-cCeEEEeCCHH
Confidence 6888554 233 46889999888775 22211100 00 0134557778889988753 35699999999
Q ss_pred hHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCC
Q 002941 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (863)
Q Consensus 472 eAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p 551 (863)
+|+..+++.+.+.+. + .| ..||+....|+. ...+...-. ..+ .
T Consensus 77 ~al~~~l~~l~~~~~---~--~g------------d~Vi~~~~~~~s-~~~~~~~~~---~~g-----------~----- 119 (404)
T PRK14012 77 ESDNLAIKGAAHFYQ---K--KG------------KHIITSKTEHKA-VLDTCRQLE---REG-----------F----- 119 (404)
T ss_pred HHHHHHHHHHHHhhc---C--CC------------CEEEEecCccHH-HHHHHHHHH---hCC-----------C-----
Confidence 999999987632111 1 11 456666655443 322221100 000 0
Q ss_pred cccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 002941 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (863)
Q Consensus 552 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg 631 (863)
.+..++.+..+ .-| .+.+++.+. .+..+|++..+ ++
T Consensus 120 ------~~~~v~~~~~g---------------------~~d--------~~~l~~~i~--------~~t~lv~~~~~-~n 155 (404)
T PRK14012 120 ------EVTYLDPQSNG---------------------IID--------LEKLEAAMR--------DDTILVSIMHV-NN 155 (404)
T ss_pred ------EEEEEccCCCC---------------------cCC--------HHHHHHhcC--------CCCEEEEEECc-CC
Confidence 00111111000 001 244555553 23456777776 78
Q ss_pred CCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHH
Q 002941 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFD 709 (863)
Q Consensus 632 ~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~ 709 (863)
..|.+.+ +++|.++|++||+++|+|++|+ +|..- .-.. ...+|+++++ |.+|. ..+|+++++++...
T Consensus 156 ~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~g~~~--~~~~--~~~~D~~~~s~~K~~gp--~g~G~l~~~~~~~~ 224 (404)
T PRK14012 156 EIGVIQD----IAAIGEICRERGIIFHVDAAQS-VGKVP--IDLS--KLKVDLMSFSAHKIYGP--KGIGALYVRRKPRV 224 (404)
T ss_pred Cccchhh----HHHHHHHHHHcCCEEEEEcchh-cCCcc--cCcc--cCCCCEEEEehhhccCC--CceEEEEEecCCCC
Confidence 8898776 8999999999999999999994 54331 1111 2358999887 96642 24678888766432
Q ss_pred hhhcCCccceeeccc-------CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe--
Q 002941 710 SFVGDSKLKALLHGH-------SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-- 780 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~-------T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-- 780 (863)
.+.. ..++. ..+.+...+.+..++++.++. . .+...++.+.+.+.+. +.+++.+.+.-.
T Consensus 225 ~~~~------~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~-~-~~~~~~~~~~l~~~l~----~~L~~~~~i~~~~~ 292 (404)
T PRK14012 225 RLEA------QMHGGGHERGMRSGTLPTHQIVGMGEAARIAKE-E-MATENERIRALRDRLW----NGIKDIEEVYLNGD 292 (404)
T ss_pred CCCc------eecCCCccCCccCCCcCHHHHHHHHHHHHHHHh-h-HHHHHHHHHHHHHHHH----HHHhcCCCEEEeCC
Confidence 2211 01111 111233344444466666532 1 2233444445555443 333444533211
Q ss_pred ---cccce-EEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEE----Ee------------------cCCEEEEecCCCC
Q 002941 781 ---VALGT-LCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM----RP------------------LGNVIYLMCGPCS 834 (863)
Q Consensus 781 ---rg~Gl-~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~----~p------------------~g~~lr~~ppl~~ 834 (863)
+..+. .+.+.+.+ ...+...|.+.+|-. .+ ..+.+|+.+...+
T Consensus 293 ~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~ 361 (404)
T PRK14012 293 LEQRVPGNLNVSFNYVE-----------GESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFT 361 (404)
T ss_pred ccccCCCEEEEEEeCcC-----------HHHHHHhCCCeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCC
Confidence 11111 22222211 122333333222211 11 1367899988889
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~~l~~ 855 (863)
|++|+|.+++.|+++++.+++
T Consensus 362 t~~dvd~~~~~l~~~~~~~~~ 382 (404)
T PRK14012 362 TEEEIDYAIELVRKSIGKLRE 382 (404)
T ss_pred CHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999887653
No 267
>PRK06767 methionine gamma-lyase; Provisional
Probab=99.18 E-value=5.4e-10 Score=127.27 Aligned_cols=169 Identities=11% Similarity=0.055 Sum_probs=103.2
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVI 696 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~ 696 (863)
+..+|++|-. .+..|.+.+ +++|.++|+++|+++|+||+++ .+-.+... .+ ..|+++. +|.++|.-.
T Consensus 146 ~tklV~lesp-~NptG~v~d----l~~I~~la~~~g~~vivD~a~a-~~~~~~pl---~~--g~Div~~S~sK~l~g~g~ 214 (386)
T PRK06767 146 NTKLIFVETP-INPTMKLID----LKQVIRVAKRNGLLVIVDNTFC-SPYLQRPL---EL--GCDAVVHSATKYIGGHGD 214 (386)
T ss_pred CceEEEEeCC-CCCCceecC----HHHHHHHHHHcCCEEEEECCCc-ccccCCch---hc--CCcEEEecCcceecCCCC
Confidence 3457777765 788887776 8999999999999999999984 22222221 12 3487754 699976326
Q ss_pred Cc-eeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 697 PL-AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 697 Pi-gav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
++ |+++++++.++.+.... +. ..+. ..+|..+++++..|+.+. ...++..+++.++. +.++++|
T Consensus 215 ~~gG~v~~~~~~i~~~~~~~--~~-~~g~--~~~~~~a~l~~~~L~tl~--~r~~~~~~~a~~la--------~~L~~~p 279 (386)
T PRK06767 215 VVAGVTICKTRALAEKIRPM--RK-DIGG--IMAPFDAWLLLRGLKTLA--VRMDRHCDNAEKIV--------SFLKNHD 279 (386)
T ss_pred ceeEEEEeChHHHHHHHHHH--HH-HhCC--CCCHHHHHHHHcCCCcHH--HHHHHHHHHHHHHH--------HHHHcCC
Confidence 75 77888888776543210 00 1122 135776666665555332 12334444444443 3456777
Q ss_pred CeeEec------------ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE
Q 002941 776 TVQRVV------------ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR 820 (863)
Q Consensus 776 ~v~~vr------------g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~ 820 (863)
.|..|. +.|.|+.+++.... ..+.+|.+.|...++.+.
T Consensus 280 ~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~-------~~~~~f~~~l~~~~~~~s 329 (386)
T PRK06767 280 AVEGVWYPEGELASRQMKRGGGVISFSIKGGK-------EETQAFINDLHFITIAVS 329 (386)
T ss_pred CccEEECCCcHHHHHhCCCCCceEEEEEcCCH-------HHHHHHHHhCCccEEecC
Confidence 666544 67889999986321 235567777766555444
No 268
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=99.17 E-value=7.9e-09 Score=118.35 Aligned_cols=201 Identities=10% Similarity=0.033 Sum_probs=121.1
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhc-CCCCcEE---EeccccC-C
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLL-GCVPDIA---CYGKLLT-G 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~-gv~PDiv---t~sKgLg-g 693 (863)
-+.+|+.| ++..|. +.+.+.+++|.++|++||+++|.||++..|-..+. ......+ +....++ +|||.+| .
T Consensus 175 ~~i~l~nP--~NPTG~-~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~p 251 (402)
T TIGR03542 175 DIIYLCSP--NNPTGT-VLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFT 251 (402)
T ss_pred eEEEEeCC--CCCCCc-cCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCC
Confidence 35566677 889996 45778899999999999999999999987743222 1111111 1111223 7899996 7
Q ss_pred CCCCceeeeccHHHH--------HhhhcCCccceeecccCC-CccHHHHHHHHHHHHHhcChh--hHHhHHHHHHHHHHH
Q 002941 694 GVIPLAATLATNAVF--------DSFVGDSKLKALLHGHSY-SAHALGCAAAAKSIKWFKDPQ--TNHNIIPERRILREL 762 (863)
Q Consensus 694 G~~Pigav~~~~~i~--------~~l~~~~~~~~~~~~~T~-~~~pla~AAalAaL~~l~~~~--l~~~l~~~~~~l~~~ 762 (863)
| +.+|+++++++++ ..+.. ....++ +.++++..++.+.++ +.. ...+..+..+..++.
T Consensus 252 G-lRiG~~i~~~~l~~~~~~~~~~~~~~-------~~~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~ 320 (402)
T TIGR03542 252 G-VRLGWTVVPKELTYADGHSVIQDWER-------RQCTKFNGASYPVQRAAEAAYA---GEGLQPILEAISYYMENARI 320 (402)
T ss_pred C-cceEEEEecHHHhhcchhhHHHHHHH-------HhhhcccCCCHHHHHHHHHHHc---CcchhHHHHHHHHHHHHHHH
Confidence 7 8999999998876 22111 011222 346666666655554 222 122222222222332
Q ss_pred HHHHHHHHHhcCCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCC
Q 002941 763 WDLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPC 833 (863)
Q Consensus 763 l~~~l~~~~~~~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~ 833 (863)
+ .+.+++++ +.-..+. |.++.+.+...- ...+++..|+ ++||++.|+ .+.+|+. +.
T Consensus 321 ~----~~~L~~~~-~~~~~~~~~~f~~v~l~~~~--------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis--~~ 385 (402)
T TIGR03542 321 L----RKALEAAG-FKVYGGEHAPYLWVKTPEGI--------SSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFS--AF 385 (402)
T ss_pred H----HHHHHhcC-ceecCCCceeEEEEECCCCC--------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEE--ec
Confidence 2 33344443 2223343 567778875421 1346777777 579999874 2578886 44
Q ss_pred CcHHHHHHHHHHHHHH
Q 002941 834 SSPEVCSQLLLKLYQR 849 (863)
Q Consensus 834 ~t~eeid~~v~~L~~~ 849 (863)
.+++++++++++|.++
T Consensus 386 ~~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 386 GKRENIVEACERIKEA 401 (402)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 5889999999888765
No 269
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.15 E-value=1.3e-08 Score=118.46 Aligned_cols=197 Identities=12% Similarity=0.060 Sum_probs=117.1
Q ss_pred CCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHh
Q 002941 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDS 710 (863)
Q Consensus 633 gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~ 710 (863)
.|+..+ +++|.++|+++|++|++|++| ++|..+......... ..|+++++ |+|.|.. .|++++++++.+.
T Consensus 193 ~g~~~d----i~~I~~i~~~~ga~l~vDaaq-~~G~i~~~~~~~~~~-~~D~l~~S~hK~l~GP~--Gg~l~~~~~~~~~ 264 (452)
T PTZ00094 193 YPRDID----YKRFREICDSVGAYLMADIAH-TSGLVAAGVLPSPFP-YADVVTTTTHKSLRGPR--SGLIFYRKKVKPD 264 (452)
T ss_pred CCCccC----HHHHHHHHHHcCCEEEEeccc-hhccccCCCCCCCCC-CCcEEEcCCccCCCCCC--ceEEEEecccchH
Confidence 456666 889999999999999999999 577765321111111 47998775 9997642 3556667665543
Q ss_pred hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChh---hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEE
Q 002941 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ---TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLC 787 (863)
Q Consensus 711 l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~---l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~ 787 (863)
+..... ...+..+.-+.++..+++..++|+.+.+.+ +.+++.++.+++.+.| .+. ..+.+.. .....+.
T Consensus 265 l~~~~~-~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L----~~~--g~~v~~~-~~~~~~~ 336 (452)
T PTZ00094 265 IENKIN-EAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAAL----EKR--GYDLVTG-GTDNHLV 336 (452)
T ss_pred HHHhhc-cccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHH----HhC--CcEEecC-CCCCceE
Confidence 322100 001111111457788888899999885433 3445555555554433 221 1111110 0011233
Q ss_pred EEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe----c------CCEEEEecCCCCc----HHHHHHHHHHHHHHHHH
Q 002941 788 AIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----L------GNVIYLMCGPCSS----PEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 788 ~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p----~------g~~lr~~ppl~~t----~eeid~~v~~L~~~l~~ 852 (863)
.+.+.... .....+...|.++||++.. . ...+|+.++..++ ++|++++++.|.+++..
T Consensus 337 ~v~~~~~~-------~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 337 LVDLRPFG-------ITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKL 408 (452)
T ss_pred eecCCcCC-------CCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 34443321 0134566777778999952 1 2689999866665 99999999999999875
No 270
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=99.13 E-value=3.2e-08 Score=115.96 Aligned_cols=223 Identities=11% Similarity=0.008 Sum_probs=121.5
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe-c-cccC----
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY-G-KLLT---- 692 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~-s-KgLg---- 692 (863)
..+.++.-| . ..|.+ ..-+++|.++|+++|+++|+|+++. .+-+|.. ....+| .|++++ + |.++
T Consensus 209 t~~V~v~~P--n-~tG~~---~~dl~eI~~~a~~~gal~iVD~a~~-~~~~g~~-~~~~~G--aD~~~~~~hK~l~~P~g 278 (481)
T PRK04366 209 TAALMLTNP--N-TLGLF---ERNILEIAEIVHEAGGLLYYDGANL-NAILGKA-RPGDMG--FDVVHLNLHKTFSTPHG 278 (481)
T ss_pred CeEEEEeCC--C-Ccccc---chHHHHHHHHHHHcCCEEEEEecCh-hhhcccC-CccccC--CCEEEEechhhcCCCCC
Confidence 334455556 3 45643 1238999999999999999999984 3333422 122334 598876 3 8776
Q ss_pred CCCCCceeeeccHHHHHhhhcCC---ccceee-------c---ccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHH
Q 002941 693 GGVIPLAATLATNAVFDSFVGDS---KLKALL-------H---GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRIL 759 (863)
Q Consensus 693 gG~~Pigav~~~~~i~~~l~~~~---~~~~~~-------~---~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l 759 (863)
+|--=+|++.+++++.+.+...- ....+. | .-.++++.+.+.++...+..+-.+++. ++.++...+
T Consensus 279 ~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~-~~a~~~~~~ 357 (481)
T PRK04366 279 GGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLR-EVSEDAVLN 357 (481)
T ss_pred CCCCCeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 22123456678888877763210 000000 0 112234445555566666655434332 222222233
Q ss_pred HHHHHHHHHHHHhcCCCeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE----e--cCCEEEEecCC
Q 002941 760 RELWDLELIQQISSHRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR----P--LGNVIYLMCGP 832 (863)
Q Consensus 760 ~~~l~~~l~~~~~~~p~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~----p--~g~~lr~~ppl 832 (863)
.+++.++|.+. ...+. .+.. ..+.+.+..-. .......++.+.|.++|+... | ..+.+++++..
T Consensus 358 a~~l~~~L~~~---~~~~~--~~~~~~~~~~~~~~~~----~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e 428 (481)
T PRK04366 358 ANYLKARLKDI---YDLPY--DRPCMHEFVLSGKKLK----ETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTE 428 (481)
T ss_pred HHHHHHHhHhh---CcccC--CCCeeEEEEEECcccc----ccCCCHHHHHHHHHHCCccCCccccccccCCeEEEcccC
Confidence 33333333332 11111 1110 01112211000 000125679999999999875 2 14689999888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002941 833 CSSPEVCSQLLLKLYQRLEEFDKVEEKLK 861 (863)
Q Consensus 833 ~~t~eeid~~v~~L~~~l~~l~~~~~~~~ 861 (863)
.+|++|||+++++|.++.+++.+-.+.++
T Consensus 429 ~~t~edid~l~~~l~~i~~~~~~~~~~~~ 457 (481)
T PRK04366 429 TESKETLDAFIAAMKQIAEEAKENPELVK 457 (481)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCcHhHh
Confidence 99999999999999999888765443343
No 271
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=99.12 E-value=2.9e-09 Score=121.96 Aligned_cols=236 Identities=18% Similarity=0.139 Sum_probs=143.6
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +.+++++||+.|+..++...+. .| .+||+... .||
T Consensus 66 r~~~p~~~~le~~lA~l~g~---~~al~~~sG~~Ai~~~l~all~---------~G------------d~Vl~~~~-~~~ 120 (403)
T PRK07810 66 RYGNPTVSMFEERLRLIEGA---EACFATASGMSAVFTALGALLG---------AG------------DRLVAARS-LFG 120 (403)
T ss_pred CCCCchHHHHHHHHHHHhCC---CcEEEECChHHHHHHHHHHHhC---------CC------------CEEEEccC-Ccc
Confidence 35677788999999999873 5789999999999998865421 12 45776654 445
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.+.......- ...+ +....++ ..|
T Consensus 121 ~t~~~~~~~~-------------~~~G-------------~~v~~vd------------------------~~d------ 144 (403)
T PRK07810 121 SCFVVCNEIL-------------PRWG-------------VETVFVD------------------------GED------ 144 (403)
T ss_pred hHHHHHHHHH-------------HHcC-------------cEEEEEC------------------------CCC------
Confidence 4433221000 0000 0000000 011
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. .++.+|++|.. .+..|.++. +++|.++|++||+++|+||++. .+-.... . .+
T Consensus 145 --~~~l~~ai~--------~~tklV~~esp-~Nptg~v~d----l~~I~~la~~~g~~vivD~a~a-~~~~~~~--~-~~ 205 (403)
T PRK07810 145 --LSQWEEALS--------VPTQAVFFETP-SNPMQSLVD----IAAVSELAHAAGAKVVLDNVFA-TPLLQRG--L-PL 205 (403)
T ss_pred --HHHHHHhcC--------cCceEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCC-ccccCCh--h-hc
Confidence 134555553 24568888875 788887765 9999999999999999999984 3222211 1 22
Q ss_pred CCCCcEEEe--ccccCC-CCCCc-eeeeccHHHHH-hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHH
Q 002941 679 GCVPDIACY--GKLLTG-GVIPL-AATLATNAVFD-SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (863)
Q Consensus 679 gv~PDivt~--sKgLgg-G~~Pi-gav~~~~~i~~-~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~ 753 (863)
| .|++++ +|.++| | ..+ |+++++++.+. .+.. +........+|..++.++..|+.+.. ..++-.
T Consensus 206 g--aDivv~S~tK~l~g~g-~~~gG~v~~~~~~~~~~l~~------~~~~~g~~~s~~~a~l~l~~L~tl~~--R~~~~~ 274 (403)
T PRK07810 206 G--ADVVVYSGTKHIDGQG-RVLGGAILGDREYIDGPVQK------LMRHTGPALSAFNAWVLLKGLETLAL--RVRHSN 274 (403)
T ss_pred C--CcEEEccCCceecCCc-CceeEEEEeChHHHHHHHHH------HHHHhCCCCCHHHHHHHHhccCcHHH--HHHHHH
Confidence 3 588865 699975 4 445 66777776554 2321 01112235688888888888876632 123333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEec------------------ccceEEEEEEcc
Q 002941 754 PERRILRELWDLELIQQISSHRTVQRVV------------------ALGTLCAIELQA 793 (863)
Q Consensus 754 ~~~~~l~~~l~~~l~~~~~~~p~v~~vr------------------g~Gl~~~iel~~ 793 (863)
+++.++. +.++++|.|..|. |.|.|+.+++..
T Consensus 275 ~~a~~~a--------~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~ 324 (403)
T PRK07810 275 ASALRIA--------EFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDA 324 (403)
T ss_pred HHHHHHH--------HHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 3333333 3456677776665 789999999964
No 272
>PRK08637 hypothetical protein; Provisional
Probab=99.11 E-value=4.2e-08 Score=111.82 Aligned_cols=215 Identities=13% Similarity=0.179 Sum_probs=131.4
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHH-----cCCeEEEecccccccccCCcc--hhhh-cCCCCcE--E---
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN-----RKIPVIFDEVFTGFWRLGVET--TADL-LGCVPDI--A--- 685 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~-----~gilLI~DEV~TGfGRtG~~~--a~e~-~gv~PDi--v--- 685 (863)
+...++..| ++..|. +.+++.+++|.++|++ ||+++|.||++..|-..+... .+.. .+..+++ +
T Consensus 147 ~~~~~~~~P--~NPTG~-~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~ 223 (388)
T PRK08637 147 KVIVILNFP--NNPTGY-TPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLD 223 (388)
T ss_pred CEEEEEeCC--CCCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEec
Confidence 344555668 899995 5578889999998886 999999999998884444321 1111 2333343 2
Q ss_pred EeccccC-CCCCCceeeec------cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHH
Q 002941 686 CYGKLLT-GGVIPLAATLA------TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRI 758 (863)
Q Consensus 686 t~sKgLg-gG~~Pigav~~------~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~ 758 (863)
++||.++ .| +.+|+++. ++++++.+.... ........++.+.++++++.+.|+ ++.+..++.+....
T Consensus 224 s~SK~~~~pG-lRlG~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~s~~~q~a~~~~l~---~~~~~~~~~~~~~~ 297 (388)
T PRK08637 224 GATKEEFVWG-FRVGFITFGTKAGSSQTVKEALEKKV--KGLIRSNISNGPHPSQSAVLRALN---SPEFDKEKQEKFQI 297 (388)
T ss_pred cccccCCCcc-cceEEEEEccccCCcHHHHHHHHHHH--HHHhhcccCCCCcHHHHHHHHHhC---CHHHHHHHHHHHHH
Confidence 5799754 56 89999984 367777764210 000011223567788888877764 45555555444333
Q ss_pred HHHHHHHHHHHHHhcCC---CeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecC-CEEEEecCC
Q 002941 759 LRELWDLELIQQISSHR---TVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLG-NVIYLMCGP 832 (863)
Q Consensus 759 l~~~l~~~l~~~~~~~p---~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g-~~lr~~ppl 832 (863)
+++... .+.+.+..++ .+.-.. .-|+++.+.+... ...+++..|+ ++||.+.+.+ +.+|+...
T Consensus 298 ~~~r~~-~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~~---------~~~~l~~~l~~~~gv~~~~~~~~~iRi~~~- 366 (388)
T PRK08637 298 LKERYE-KTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKGV---------DAEELRVHLLEKYGIGTIALNETDLRIAFS- 366 (388)
T ss_pred HHHHHH-HHHHHHHhhCCCCCcccccccceEEEEecCChH---------HHHHHHHHHhhhcceEEEeccCCceEEEee-
Confidence 433221 1223333331 222233 3466777777421 2567888886 6799887654 56887633
Q ss_pred CCcHHHHHHHHHHHHHHHHHH
Q 002941 833 CSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 833 ~~t~eeid~~v~~L~~~l~~l 853 (863)
..+++++++++++|.+++..+
T Consensus 367 ~~~~~~i~~~~~~l~~~~~~~ 387 (388)
T PRK08637 367 CVEEEDIPELFDSIYKAIKDL 387 (388)
T ss_pred cCCHHHHHHHHHHHHHHHHhc
Confidence 367899999999998888654
No 273
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=99.10 E-value=1.5e-08 Score=115.00 Aligned_cols=316 Identities=14% Similarity=0.101 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCC
Q 002941 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (863)
Q Consensus 419 p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~ 498 (863)
++..+|+.+.+...... ...+...++++.+++..+ .+.+++++||++|...+++.. . . + +|
T Consensus 11 ~~e~~a~~~~~~~~~~~----~~g~~~~~~e~~la~~~g---~~~~v~~~sgt~aL~~~l~al-~-~----~--pG---- 71 (376)
T TIGR02379 11 GQELEYIAEAISEGKLS----GDGPFSRRCETWLENRTG---TKKALLTPSCTAALEMAALLL-D-I----Q--PG---- 71 (376)
T ss_pred HHHHHHHHHHHHcCCcc----CCcHHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHc-C-C----C--Cc----
Confidence 44567777777653221 234668899999999887 468999999999998888754 1 0 0 12
Q ss_pred CccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcccccc
Q 002941 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578 (863)
Q Consensus 499 ~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~ 578 (863)
.+||+...+|.+........+... ..++....
T Consensus 72 --------d~Viv~~~t~~~~~~~~~~~G~~~-----------------------------v~vd~d~~----------- 103 (376)
T TIGR02379 72 --------DEVIMPSYTFVSTANAFVLRGAKI-----------------------------VFVDIRPD----------- 103 (376)
T ss_pred --------CEEEECCCCcHHHHHHHHHcCCEE-----------------------------EEEecCCC-----------
Confidence 578888888776432222111000 00111000
Q ss_pred ccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEE
Q 002941 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658 (863)
Q Consensus 579 ~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI 658 (863)
.+. -| .+.+++.+. .++.+|+ |+ + ..|...+ +++|.++|++||+++|
T Consensus 104 -------~~~--~d--------~~~le~~i~--------~~tk~Ii--p~-~-~~G~~~d----~~~I~~la~~~~i~vI 150 (376)
T TIGR02379 104 -------TMN--ID--------ETLIESAIT--------HRTKAIV--PV-H-YAGVACD----MDTIMALANKHQLFVI 150 (376)
T ss_pred -------cCC--CC--------HHHHHHhcC--------cCceEEE--Ee-C-CCCCccC----HHHHHHHHHHCCCEEE
Confidence 000 01 133444442 1344554 54 3 4565554 7899999999999999
Q ss_pred EecccccccccCCcchhhhcCCCCcEEEec----cccCCCCCCceeeecc-HHHHHhhhc---CCccc-e----------
Q 002941 659 FDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFVG---DSKLK-A---------- 719 (863)
Q Consensus 659 ~DEV~TGfGRtG~~~a~e~~gv~PDivt~s----KgLggG~~Pigav~~~-~~i~~~l~~---~~~~~-~---------- 719 (863)
.|++|+ +|.. +.-...|..-|+.+|| |.++.| ...|+++++ +++++.+.. .+... .
T Consensus 151 eDaa~~-~g~~---~~~~~~g~~~~~~~fSf~~~K~l~~g-~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 225 (376)
T TIGR02379 151 EDAAQG-VMST---YKGRALGSIGHLGTFSFHETKNYTSG-GEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYT 225 (376)
T ss_pred EECccc-cCCc---cCCcccCCCCCEEEEeCCCCCcCccc-CCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcce
Confidence 999994 5432 1112334445889998 999876 567887765 778776652 11000 0
Q ss_pred -eecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee-Ee-cccceEEEEEEccCCc
Q 002941 720 -LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ-RV-VALGTLCAIELQAAGC 796 (863)
Q Consensus 720 -~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~-~v-rg~Gl~~~iel~~~~~ 796 (863)
...++.|-.+.+.+|.+++-|+.+++ +.++-+++.++..+.|.......+...|.+. .. .... ++.+.+....
T Consensus 226 ~~~~g~n~~~~~~~Aa~g~~qL~~l~~--~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~- 301 (376)
T TIGR02379 226 WRDIGSSYLPSELQAAYLWAQLEQADR--INQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAH-MFYIKLKDED- 301 (376)
T ss_pred eeeecccCCccHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeE-EEEEEECCcC-
Confidence 01345555677888888888887743 1223233333333322110000000111110 11 1111 2344443210
Q ss_pred CCCCchHHHHHHHHHHHHCCcEEEe----c-----------------------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 797 NAGYGSLYAASLLKKLREDGVYMRP----L-----------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 797 ~~~~~~~~~~~l~~~l~e~GV~~~p----~-----------------------g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
...++.+.|.++||-+++ . ...+.+-.....|++|++.++++|.++
T Consensus 302 -------~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~~ 374 (376)
T TIGR02379 302 -------DRNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICDY 374 (376)
T ss_pred -------CHHHHHHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHHH
Confidence 246788899999998762 0 012333222347999999999999876
Q ss_pred H
Q 002941 850 L 850 (863)
Q Consensus 850 l 850 (863)
+
T Consensus 375 ~ 375 (376)
T TIGR02379 375 L 375 (376)
T ss_pred h
Confidence 4
No 274
>PLN02242 methionine gamma-lyase
Probab=99.08 E-value=3e-09 Score=122.23 Aligned_cols=173 Identities=17% Similarity=0.217 Sum_probs=110.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
+.++...+|+++|+++.+ .+.+++++||++|+..++...++ .| ..||.....|.+.
T Consensus 73 ~~~Pt~~~LE~~lA~l~g---~~~~l~~~sG~~Ai~~al~al~~---------~G------------D~Vl~~~~~Y~~~ 128 (418)
T PLN02242 73 HFNPTVLNLGRQMAALEG---TEAAYCTASGMSAISSVLLQLCS---------SG------------GHVVASNTLYGGT 128 (418)
T ss_pred CCChhHHHHHHHHHHHhC---CCeEEEEccHHHHHHHHHHHHhC---------CC------------CEEEEcCCcHHHH
Confidence 457889999999999987 36788999999999999976531 12 4677776666332
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
...+....... .+ +....++ ..|
T Consensus 129 -~~~~~~~~~~~------------~G-------------~~~~~~d------------------------~~d------- 151 (418)
T PLN02242 129 -HALLAHFLPRK------------CN-------------ITTTFVD------------------------ITD------- 151 (418)
T ss_pred -HHHHHHhhhhc------------cC-------------ceEEEcC------------------------CCC-------
Confidence 21111000000 00 0000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.+. +.+..+|++|.. ++..|.+.+ +++|.++|++||+++|+||+++.+ ... ...+|
T Consensus 152 -~e~l~~~i~-------~~~tklV~lesp-~NPtG~v~d----l~~I~~la~~~gi~livDea~~~~-~~~----~~~~g 213 (418)
T PLN02242 152 -LEAVKKAVV-------PGKTKVLYFESI-SNPTLTVAD----IPELARIAHEKGVTVVVDNTFAPM-VLS----PARLG 213 (418)
T ss_pred -HHHHHHhcC-------cCCCEEEEEecC-CCCCCcccC----HHHHHHHHHHhCCEEEEECCCCcc-CCC----HHHcC
Confidence 133444442 224668888876 888887764 899999999999999999999644 221 11233
Q ss_pred CCCcEE--EeccccCCCCCCc-eeeeccHHHHHhhhc
Q 002941 680 CVPDIA--CYGKLLTGGVIPL-AATLATNAVFDSFVG 713 (863)
Q Consensus 680 v~PDiv--t~sKgLggG~~Pi-gav~~~~~i~~~l~~ 713 (863)
.|++ +++|.++|+-.++ |++++++++++.+..
T Consensus 214 --~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~ 248 (418)
T PLN02242 214 --ADVVVHSISKFISGGADIIAGAVCGPAELVNSMMD 248 (418)
T ss_pred --CcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHH
Confidence 5776 5789997643564 788889998888763
No 275
>PRK06234 methionine gamma-lyase; Provisional
Probab=99.07 E-value=8.7e-09 Score=117.96 Aligned_cols=238 Identities=13% Similarity=0.075 Sum_probs=143.9
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
+.++...+|.++|+++.+. +.++.++||++|+..++...++ .| ..||+.... ||.
T Consensus 61 ~~~p~~~~Le~~iA~~~g~---~~~l~~~sG~~Ai~~al~~ll~---------~G------------d~Vl~~~~~-y~~ 115 (400)
T PRK06234 61 LGNPTSTEVENKLALLEGG---EAAVVAASGMGAISSSLWSALK---------AG------------DHVVASDTL-YGC 115 (400)
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHHhC---------CC------------CEEEEecCc-cch
Confidence 4567788999999999873 5789999999999888764421 12 457766654 454
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
+.......- ..+ |+....++ ..|
T Consensus 116 ~~~~~~~~~-~~~-------------------------G~~v~~vd------------------------~~d------- 138 (400)
T PRK06234 116 TFALLNHGL-TRY-------------------------GVEVTFVD------------------------TSN------- 138 (400)
T ss_pred HHHHHHHHH-hhC-------------------------CeEEEEEC------------------------CCC-------
Confidence 443221100 000 00000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc--CCeEEEecccccccccCCcchhhh
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADL 677 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~--gilLI~DEV~TGfGRtG~~~a~e~ 677 (863)
.+.+++.+. ++..+|++|.. .+..|.+.+ +++|.++|++| |+++|+||++. .+..+..
T Consensus 139 -~e~l~~~i~--------~~tklI~iesP-~NPtG~v~d----l~~I~~la~~~~~~i~livDea~~-~~~~~~~----- 198 (400)
T PRK06234 139 -LEEVRNALK--------ANTKVVYLETP-ANPTLKVTD----IKAISNIAHENNKECLVFVDNTFC-TPYIQRP----- 198 (400)
T ss_pred -HHHHHHHhc--------cCCeEEEEECC-CCCCCCcCC----HHHHHHHHHhcCCCCEEEEECCCC-chhcCCc-----
Confidence 134555553 23457888865 788887766 99999999997 99999999985 3222222
Q ss_pred cCCCCcEEE--eccccCCCCCCc-eeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 678 LGCVPDIAC--YGKLLTGGVIPL-AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 678 ~gv~PDivt--~sKgLggG~~Pi-gav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
.+...|+++ ++|.++|.-..+ |++++++++++.+..... ....+...+|..++.++..|+-+. ...++..+
T Consensus 199 l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~----~~~~g~~l~p~~a~l~~~~l~tl~--~r~~~~~~ 272 (400)
T PRK06234 199 LQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGI----KDMTGSVIGPFEAFLIIRGMKTLQ--IRMEKHCK 272 (400)
T ss_pred hhhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHH----HHhcCCCCCHHHHHHHHhccCcHH--HHHHHHHH
Confidence 123468775 579997621454 778899998887653110 112245668888888877776442 23445555
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEcc
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~ 793 (863)
+..++.++ ++++|.|..| .|.|.|+.+++..
T Consensus 273 na~~~a~~--------L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~ 321 (400)
T PRK06234 273 NAMKVAKF--------LESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKG 321 (400)
T ss_pred HHHHHHHH--------HHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecC
Confidence 55555543 3444444322 3568899999863
No 276
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=99.07 E-value=9e-09 Score=117.71 Aligned_cols=237 Identities=15% Similarity=0.091 Sum_probs=144.5
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +.++.++||++|+..++...++ .| ..||+....|++
T Consensus 60 r~~~p~~~~le~~lA~l~g~---~~~i~~ssG~~Ai~~~l~all~---------~G------------D~Vi~~~~~y~~ 115 (398)
T PRK08249 60 RNTNPTVQAFEEKVRILEGA---EAATAFSTGMAAISNTLYTFLK---------PG------------DRVVSIKDTYGG 115 (398)
T ss_pred CCCChHHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhcC---------CC------------CEEEEcCCchHH
Confidence 35678889999999999873 5788889999999888865421 12 568888888866
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
......... ..+ |+....++ ..|
T Consensus 116 ~~~~~~~~~--~~~-------------------------Gi~v~~vd------------------------~~d------ 138 (398)
T PRK08249 116 TNKIFTEFL--PRM-------------------------GVDVTLCE------------------------TGD------ 138 (398)
T ss_pred HHHHHHHHH--hhC-------------------------CeEEEEcC------------------------CCC------
Confidence 421100000 000 00000000 011
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. +++.+|++|-. .+..|.+.+ +++|.++|++||+++|+|+++..+ ..+. ..
T Consensus 139 --~e~l~~~i~--------~~tklV~ie~p-~NPtg~v~d----l~~I~~la~~~gi~livD~t~a~~-~~~~-----~l 197 (398)
T PRK08249 139 --HEQIEAEIA--------KGCDLLYLETP-TNPTLKIVD----IERLAAAAKKVGALVVVDNTFATP-INQN-----PL 197 (398)
T ss_pred --HHHHHHhcC--------CCCeEEEEECC-CCCCCccCC----HHHHHHHHHHcCCEEEEECCcCcc-ccCC-----ch
Confidence 133444442 24567888765 688887776 899999999999999999998632 2221 11
Q ss_pred CCCCcEEE--eccccCCCCCCc-eeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHH
Q 002941 679 GCVPDIAC--YGKLLTGGVIPL-AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (863)
Q Consensus 679 gv~PDivt--~sKgLggG~~Pi-gav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~ 755 (863)
....|+++ ++|.++|.--.+ |++++++++++.+..- ........+|..++.++..|+.+.. ..++..++
T Consensus 198 ~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~------~~~~g~~~s~~~a~l~l~~l~tL~~--R~~~~~~n 269 (398)
T PRK08249 198 ALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHY------REINGATMDPMSAYLILRGMKTLKL--RVRQQQES 269 (398)
T ss_pred hhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHH------HHhcCCCCCHHHHHHHHhCcchHHH--HHHHHHHH
Confidence 23467774 579997521333 5667788888876531 1223445678888888777776631 23444444
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEcc
Q 002941 756 RRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (863)
Q Consensus 756 ~~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~ 793 (863)
...+.+ .++++|.|..| .|.|.|+.+++..
T Consensus 270 a~~la~--------~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~ 317 (398)
T PRK08249 270 AMALAK--------YLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKG 317 (398)
T ss_pred HHHHHH--------HHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcC
Confidence 444444 33445544322 3678899999963
No 277
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=99.06 E-value=7.6e-09 Score=118.08 Aligned_cols=148 Identities=12% Similarity=0.078 Sum_probs=94.5
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCC-CC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG-GV 695 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLgg-G~ 695 (863)
+..+|++|.. .+..|.+.+ +++|.++|++||+++|+||++. .+..+.. .+...|+++ ++|.++| |
T Consensus 144 ~tklV~le~p-~Np~G~v~d----l~~I~~la~~~gi~livD~a~a-~~~~~~~-----~~~g~Divv~S~sK~lgg~g- 211 (391)
T TIGR01328 144 NTKIVYFETP-ANPTMKLID----MERVCRDAHSQGVKVIVDNTFA-TPMLTNP-----VALGVDVVVHSATKYIGGHG- 211 (391)
T ss_pred CCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCc-hhccCCc-----hhcCCCEEEccccccccCCC-
Confidence 4567888865 788887765 8999999999999999999984 3333322 233568775 5799985 4
Q ss_pred CC-ceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 696 IP-LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 696 ~P-igav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
.+ .|++++++++++.+..... ....+...+|..++.++..|+.+. ...++..+++.++.+.| +++
T Consensus 212 ~~~gG~v~~~~~li~~l~~~~~----~~~~g~~l~~~~a~l~l~~L~tl~--~r~~~~~~na~~la~~L--------~~~ 277 (391)
T TIGR01328 212 DVVAGLICGKAELLQQIRMVGI----KDMTGSVISPFDAWLILRGLKTLN--IRMKRHSENAMKVAEYL--------KSH 277 (391)
T ss_pred CceEEEEEcCHHHHHHHHHHHH----HhCCCCCCCcHHHHHHHhCcCcHH--HHHHHHHHHHHHHHHHH--------HhC
Confidence 44 4667788998877653110 011123457777777777665442 22445555555555543 334
Q ss_pred CCeeE------------------ecccceEEEEEEc
Q 002941 775 RTVQR------------------VVALGTLCAIELQ 792 (863)
Q Consensus 775 p~v~~------------------vrg~Gl~~~iel~ 792 (863)
|.|.. .+|.|.|+.|++.
T Consensus 278 p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~ 313 (391)
T TIGR01328 278 PAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELK 313 (391)
T ss_pred CCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeC
Confidence 43321 2466889999996
No 278
>PRK07049 methionine gamma-lyase; Validated
Probab=99.06 E-value=8.1e-09 Score=119.12 Aligned_cols=242 Identities=12% Similarity=0.080 Sum_probs=141.8
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++....|+++|+++.+. +.+++++||++|+..++...+. .| ..||+....|.|
T Consensus 79 R~~~Pt~~~Le~~lA~leg~---~~~iv~~sG~~Ai~~~l~al~~---------~G------------d~Vv~~~p~Y~~ 134 (427)
T PRK07049 79 RFNHPNSEIVEDRLAVYEGA---ESAALFSSGMSAIATTLLAFVR---------PG------------DVILHSQPLYGG 134 (427)
T ss_pred CCCCcCHHHHHHHHHHHhCC---CcEEEEccHHHHHHHHHHHHhC---------CC------------CEEEEcCCCccc
Confidence 35567788999999998873 5788899999999888865521 12 468888888877
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.......... . .|+..+.+++. .|
T Consensus 135 ~~~~~~~~l~--------------~-------------~Gi~~v~~~~~-----------------------~d------ 158 (427)
T PRK07049 135 TETLLAKTFR--------------N-------------FGVGAVGFADG-----------------------LS------ 158 (427)
T ss_pred HHHHHHHHHH--------------h-------------cCcEEEEEeCC-----------------------CC------
Confidence 5332111000 0 00001111110 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHH------cCCeEEEecccccccccCCc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN------RKIPVIFDEVFTGFWRLGVE 672 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~------~gilLI~DEV~TGfGRtG~~ 672 (863)
.+.+++.+++.+ ...++.+|++|.. ++..|.++. ++++.+++++ +++++|+||++.++.... .
T Consensus 159 --~~~l~~~l~~~~---~~~~tklv~lesP-~NPtg~v~d----~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~-p 227 (427)
T PRK07049 159 --EAAIGAAAEAAA---AKGRVSLILIETP-ANPTNSLVD----VAAVRRVADAIEARQGHRPIIACDNTLLGPVFQK-P 227 (427)
T ss_pred --HHHHHHHHHhhc---cCCCceEEEEECC-CCCCCcccC----HHHHHHHHHHhhhcccCCCEEEEECCccccccCC-c
Confidence 123344443211 1235667888875 889987764 4455555554 899999999975441111 1
Q ss_pred chhhhcCCCCcEE--EeccccCC--CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhh
Q 002941 673 TTADLLGCVPDIA--CYGKLLTG--GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQT 748 (863)
Q Consensus 673 ~a~e~~gv~PDiv--t~sKgLgg--G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l 748 (863)
. .+ ..|++ +++|.++| | +.+|++++++++++.+... ........+|..+.+++..|+.+.. .
T Consensus 228 --l-~~--g~divv~S~SK~~gG~~g-lr~G~vv~~~~l~~~l~~~------~~~~g~~ls~~~a~l~~r~L~tl~~--R 293 (427)
T PRK07049 228 --L-EH--GADLSVYSLTKYVGGHSD-LVAGAVLGRKALIRQVRAL------RSAIGTQLDPHSCWMLGRSLETLVL--R 293 (427)
T ss_pred --c-cc--CCCEEEEcCceeecCCCC-cEEEEEECCHHHHHHHHHH------HHhcCCCCCHHHHHHHHcCCChHHH--H
Confidence 1 12 35776 67999984 6 7899999999988877631 1112334677777777766654321 1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe--------------------cccceEEEEEEcc
Q 002941 749 NHNIIPERRILRELWDLELIQQISSHRTVQRV--------------------VALGTLCAIELQA 793 (863)
Q Consensus 749 ~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v--------------------rg~Gl~~~iel~~ 793 (863)
+++..++...+. +.++++|.|..| .|.|.|+.|++..
T Consensus 294 ~~~~~~~a~~la--------~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~ 350 (427)
T PRK07049 294 MERANRNARAVA--------EFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKG 350 (427)
T ss_pred HHHHHHHHHHHH--------HHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcC
Confidence 223333333333 344555544333 2568899999963
No 279
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.04 E-value=3e-08 Score=111.39 Aligned_cols=293 Identities=10% Similarity=0.031 Sum_probs=157.8
Q ss_pred CcHHHHHHHHHHHHhcccccCCC-C-----CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcc
Q 002941 417 LQIELARDMGYTAARFGHVMFPE-N-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~-~-----~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G 490 (863)
-++.|.+|+.+.+.......... . ..+...++.++|+++++.+ .+.++|++++++|++.+++... .. +
T Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~~~g~t~a~~~~l~~l~-~~----~ 83 (353)
T TIGR03235 10 IDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGAD-TEEVIFTSGATESNNLAILGLA-RA----G 83 (353)
T ss_pred CCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHHHHHHHHHHHH-Hh----c
Confidence 46899999988875422111000 0 1134567888999988753 3579999999999999987652 11 1
Q ss_pred ccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhh
Q 002941 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (863)
Q Consensus 491 ~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (863)
...| +..||+ ....|.+.......... . +. .+..++.+...
T Consensus 84 ~~~g-----------~~~vi~-~~~~~~s~~~~~~~~~~---~-----------G~-----------~v~~v~~~~~~-- 124 (353)
T TIGR03235 84 EQKG-----------KKHIIT-SAIEHPAVLEPIRALER---N-----------GF-----------TVTYLPVDESG-- 124 (353)
T ss_pred ccCC-----------CCeeeE-cccccHHHHHHHHHHHh---c-----------CC-----------EEEEEccCCCC--
Confidence 0011 133444 44445543322211100 0 00 01111111000
Q ss_pred hhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHH
Q 002941 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (863)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc 650 (863)
..| .+.+++.+. ++..+|++..+ ++..|.+.+ +++|.++|
T Consensus 125 -------------------~~d--------~~~l~~~l~--------~~~~lv~~~~~-~n~tG~~~~----~~~I~~l~ 164 (353)
T TIGR03235 125 -------------------RID--------VDELADAIR--------PDTLLVSIMHV-NNETGSIQP----IREIAEVL 164 (353)
T ss_pred -------------------cCC--------HHHHHHhCC--------CCCEEEEEEcc-cCCceeccC----HHHHHHHH
Confidence 011 234554442 23466777775 888998877 89999999
Q ss_pred HHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCccceeecc-----
Q 002941 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHG----- 723 (863)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~----- 723 (863)
++||+++|+|++| ++|..- +-.+. ...|+++++ |.+ |-..+|+++++++..+.... .+...+
T Consensus 165 ~~~~~~~ivD~a~-~~g~~~--~~~~~--~~~D~~~~s~~K~~--gp~g~g~l~~~~~~~~~~~~----~~~~~~~~~~~ 233 (353)
T TIGR03235 165 EAHEAFFHVDAAQ-VVGKIT--VDLSA--DRIDLISCSGHKIY--GPKGIGALVIRKRGKPKAPL----KPIMFGGGQER 233 (353)
T ss_pred HHcCCEEEEEchh-hcCCcc--ccccc--cCCCEEEeehhhcC--CCCceEEEEEccCccccccc----CceeeCCCCcC
Confidence 9999999999999 455431 11222 247999887 964 31236888888875332110 001110
Q ss_pred --cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe----cccceEEEEEEccCCcC
Q 002941 724 --HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV----VALGTLCAIELQAAGCN 797 (863)
Q Consensus 724 --~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v----rg~Gl~~~iel~~~~~~ 797 (863)
...+.++..+++..++|+++.+ + .++.+++.+.+.+.+.+.+ .+ +.+.-+ .....+..+.+...
T Consensus 234 ~~~~gt~~~~~~~al~~al~~~~~-~-~~~~~~~~~~l~~~l~~~l----~~-~g~~~~~~~~~~~~~i~~~~~~~~--- 303 (353)
T TIGR03235 234 GLRPGTLPVHLIVGMGEAAEIARR-N-AQAWEVKLRAMRNQLRDAL----QT-LGVKLNGDPAETIPHILNFSIDGV--- 303 (353)
T ss_pred ccccCCCChHHHHHHHHHHHHHHh-h-HHHHHHHHHHHHHHHHHHh----cc-CCeEEeCCcccccCCEEEEEeCCc---
Confidence 1234566777778888887643 1 3344555555555544333 22 222111 11223444544321
Q ss_pred CCCchHHHHHHHHHHHHCCcEEEec
Q 002941 798 AGYGSLYAASLLKKLREDGVYMRPL 822 (863)
Q Consensus 798 ~~~~~~~~~~l~~~l~e~GV~~~p~ 822 (863)
....+.+.|.+ ||.++++
T Consensus 304 ------~~~~v~~~L~~-~i~v~~g 321 (353)
T TIGR03235 304 ------NSEALIVNLRA-DAAVSTG 321 (353)
T ss_pred ------CHHHHHHHHhC-CeEEEch
Confidence 14567777754 8888764
No 280
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=99.04 E-value=5.7e-08 Score=110.52 Aligned_cols=309 Identities=15% Similarity=0.100 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCC
Q 002941 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (863)
Q Consensus 419 p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~ 498 (863)
++-.+++.+.+..... ...+...+|.++|+++++. +.+++++||++|+..|++.. . . + .|
T Consensus 14 ~~e~~~~~~~l~~~~~-----~~g~~~~~le~~la~~~g~---~~~v~~~sgt~al~lal~al-~-~----~--~G---- 73 (379)
T PRK11658 14 DEELAAVKEVLRSGWI-----TTGPKNQALEQAFCQLTGN---QHAIAVSSATAGMHITLMAL-G-I----G--PG---- 73 (379)
T ss_pred HHHHHHHHHHHHcCCc-----cCCHhHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHc-C-C----C--CC----
Confidence 4456777777664322 2346688999999999984 56888999999999998755 1 0 0 12
Q ss_pred CccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCc-chhhhhhccccc
Q 002941 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHKD 577 (863)
Q Consensus 499 ~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~~~~~~~~ 577 (863)
.+||+...+|.+... ++...|.. +..++.. +.+
T Consensus 74 --------d~Viv~~~~~~~~~~-~~~~~G~~----------------------------~v~vd~~~~~~--------- 107 (379)
T PRK11658 74 --------DEVITPSLTWVSTLN-MIVLLGAT----------------------------PVMVDVDRDTL--------- 107 (379)
T ss_pred --------CEEEECCCcHHHHHH-HHHHcCCE----------------------------EEEEecCCCcC---------
Confidence 568888888776532 22111100 0011110 000
Q ss_pred cccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeE
Q 002941 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (863)
Q Consensus 578 ~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilL 657 (863)
.-| .+.+++.+. .++.+|+ |+ + ..|...+ +++|.++|++||+++
T Consensus 108 ------------~~d--------~~~l~~~i~--------~~tkav~--~~-~-~~G~~~d----~~~i~~~a~~~gi~v 151 (379)
T PRK11658 108 ------------MVT--------PEAIEAAIT--------PRTKAII--PV-H-YAGAPAD----LDAIRAIGERYGIPV 151 (379)
T ss_pred ------------CcC--------HHHHHHhcc--------cCCeEEE--Ee-C-CCCCcCC----HHHHHHHHHHcCCeE
Confidence 001 134555442 2344554 43 2 3455443 789999999999999
Q ss_pred EEecccc-cccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeecc-HHHHHhhhc---CCcc-c-----------
Q 002941 658 IFDEVFT-GFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLAT-NAVFDSFVG---DSKL-K----------- 718 (863)
Q Consensus 658 I~DEV~T-GfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~-~~i~~~l~~---~~~~-~----------- 718 (863)
|.|++|+ |.-..|... ..+|. ++..|+ |.|++| ..|+++++ +++++.+.. .+.. .
T Consensus 152 i~D~a~a~g~~~~~~~~--g~~g~--~~~Sf~~~K~l~~g--~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 225 (379)
T PRK11658 152 IEDAAHAVGTYYKGRHI--GARGT--AIFSFHAIKNITCA--EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAP 225 (379)
T ss_pred EEECCCccCCeECCeec--CCCCC--EEEeCCCCCcCccc--CceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCC
Confidence 9999995 322223211 12343 566664 788765 46667764 777765532 1100 0
Q ss_pred ---eeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee--Eec--ccc--eEEEE
Q 002941 719 ---ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ--RVV--ALG--TLCAI 789 (863)
Q Consensus 719 ---~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~--~vr--g~G--l~~~i 789 (863)
.+..|+.+..+.+.+|.+++-|+.+++ ..++-+++.+.+. +.+++.+.+. ... +.. .++.+
T Consensus 226 ~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~------~~~~r~~~a~~~~----~~L~~~~~~~~~~~~~~~~~~~~~~~~ 295 (379)
T PRK11658 226 QAEVLTPGYKYNLADINAAIALVQLAKLEA------LNARRREIAARYL----QALADLPFQPLSLPAWPHQHAWHLFII 295 (379)
T ss_pred cceeeccccccCcCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH----HHhcCCCCccCcCCCCCCceeEEEEEE
Confidence 011233444556666767666665432 2222233333222 2333333210 101 111 23334
Q ss_pred EEccCCcCCCCchHHHHHHHHHHHHCCcEEEe----------------c----------CCEEEEecCCCCcHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----------------L----------GNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p----------------~----------g~~lr~~ppl~~t~eeid~~v 843 (863)
.+.... . .....++.+.|.++||-++. . ...+.+-.....|+|+++.++
T Consensus 296 ~~~~~~--~---~~~r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~ 370 (379)
T PRK11658 296 RVDEER--C---GISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVI 370 (379)
T ss_pred EECCcc--c---cCCHHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHH
Confidence 442210 0 01245788889999987651 0 033333223347999999999
Q ss_pred HHHHHHH
Q 002941 844 LKLYQRL 850 (863)
Q Consensus 844 ~~L~~~l 850 (863)
++|++++
T Consensus 371 ~~i~~~~ 377 (379)
T PRK11658 371 TALQQIA 377 (379)
T ss_pred HHHHHHH
Confidence 9998865
No 281
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=99.04 E-value=5.3e-08 Score=112.67 Aligned_cols=314 Identities=13% Similarity=0.082 Sum_probs=171.9
Q ss_pred HHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCcc
Q 002941 422 ARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTT 501 (863)
Q Consensus 422 ~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~ 501 (863)
.+++.+++...... ..+...+|.++|+++++ .+.+++++||++|+..|++.+.+.+....+...
T Consensus 47 ~~a~~~~~~~~~~~-----~G~~~~~fe~~lA~~~g---~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~p-------- 110 (438)
T PRK15407 47 LQNLVDASLDFWLT-----TGRFNDAFEKKLAEFLG---VRYALLVNSGSSANLLAFSALTSPKLGDRALKP-------- 110 (438)
T ss_pred HHHHHHHHHhCccc-----CChhHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHHhhccccccCCCC--------
Confidence 35555555543221 13457789999999988 357999999999999999876321111111111
Q ss_pred ccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecC-cchhhhhhcccccccc
Q 002941 502 EKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDITF 580 (863)
Q Consensus 502 ~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-P~~~~~~~~~~~~~~~ 580 (863)
...||+...+|.+........+..+ .+ +++ |..+
T Consensus 111 ----Gd~VIv~~~t~~a~~~~v~~~G~~p---------------v~--------------vdvd~~~~------------ 145 (438)
T PRK15407 111 ----GDEVITVAAGFPTTVNPIIQNGLVP---------------VF--------------VDVELPTY------------ 145 (438)
T ss_pred ----CCEEEECCCCcHHHHHHHHHcCCEE---------------EE--------------EecCCCcC------------
Confidence 2578888888866533322211100 00 000 0000
Q ss_pred ccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEe
Q 002941 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD 660 (863)
Q Consensus 581 ~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~D 660 (863)
. -| .+.+++.+. .++.+|++.++ .| . +..+++|+++|++||++||.|
T Consensus 146 -------~--id--------~~~le~~i~--------~~tkaVi~~~~-~G---~----p~dl~~I~~la~~~gi~vIeD 192 (438)
T PRK15407 146 -------N--ID--------ASLLEAAVS--------PKTKAIMIAHT-LG---N----PFDLAAVKAFCDKHNLWLIED 192 (438)
T ss_pred -------C--cC--------HHHHHHHcC--------cCCeEEEEeCC-CC---C----hhhHHHHHHHHHHCCCEEEEE
Confidence 0 01 134444442 24677888775 43 2 235899999999999999999
Q ss_pred cccccccccCCcchhhhcCCCCcEEEec----cccCCCCCCceeeecc-HHHHHhhh---cCCcc---------------
Q 002941 661 EVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFV---GDSKL--------------- 717 (863)
Q Consensus 661 EV~TGfGRtG~~~a~e~~gv~PDivt~s----KgLggG~~Pigav~~~-~~i~~~l~---~~~~~--------------- 717 (863)
++|+ +|-. +.-...|-.-|+.+|| |.++.| ..|+++++ +++.+.+. ..+..
T Consensus 193 aa~a-~G~~---~~g~~~G~~gd~~~fSf~~~k~~~~g--eGG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 266 (438)
T PRK15407 193 NCDA-LGST---YDGRMTGTFGDIATLSFYPAHHITMG--EGGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRF 266 (438)
T ss_pred Cccc-hhhh---cCCeeeeccCceEEEeCCCCCCcccc--CceEEEECCHHHHHHHHHHHHhCccccccccccccccccc
Confidence 9994 5432 1111233334888875 667654 24677765 44544322 11100
Q ss_pred ---------------ceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC-e-eE-
Q 002941 718 ---------------KALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT-V-QR- 779 (863)
Q Consensus 718 ---------------~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~-v-~~- 779 (863)
.....|+.|..+.+.+|.+++-|+.+++ ..++-+++.+++.+. ++..+. + ..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l~~--~~~~R~~~a~~y~~~--------L~~~~~~~~~~~ 336 (438)
T PRK15407 267 GWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKLPG--FIEARKANFAYLKEG--------LASLEDFLILPE 336 (438)
T ss_pred ccccccccccccccccccccccccCccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--------hccCCCccccCc
Confidence 0001345566788999999999987743 233334444444432 223331 1 10
Q ss_pred -eccc-c--eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----------------------------CCEE
Q 002941 780 -VVAL-G--TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----------------------------GNVI 826 (863)
Q Consensus 780 -vrg~-G--l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----------------------------g~~l 826 (863)
..+. - .++.+.+.... . ....++.+.|.++||-+++. ...+
T Consensus 337 ~~~~~~~~~~~~~i~~~~~~---~---~~Rd~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l 410 (438)
T PRK15407 337 ATPNSDPSWFGFPITVKEDA---G---FTRVELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTF 410 (438)
T ss_pred CCCCCeeEEEEEEEEECCcC---C---CCHHHHHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeE
Confidence 1111 1 23344443211 0 02467888999999855310 0223
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 827 YLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 827 r~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.+-.....|++|++.++++|.+++.
T Consensus 411 ~LP~~~~l~~~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 411 WIGVYPGLTEEMLDYVIEKIEEFFG 435 (438)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHh
Confidence 3322234689999999999998774
No 282
>PRK12566 glycine dehydrogenase; Provisional
Probab=99.03 E-value=1.3e-07 Score=115.65 Aligned_cols=318 Identities=12% Similarity=0.043 Sum_probs=179.3
Q ss_pred hHHHHHHHHHHhhcCCCCCCeEE-EeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcc
Q 002941 443 EPALECAELLLQGVGKGWASRAY-FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (863)
Q Consensus 443 ~~~~eLae~L~~~~p~~~~~~v~-f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~ 521 (863)
+...+|.+.|++++| ++.+. +-+||+.|.-+++... |.|+..+|++ +| + ++....+-||...
T Consensus 543 q~i~elq~~l~eLtG---md~~Sl~p~sGA~gE~A~Lmai-r~yh~~~Ge~-~r-----------~-~vLIp~saHgtNp 605 (954)
T PRK12566 543 AMIDELEAWLCAITG---FDAICMQPNSGAQGEYAGLLAI-RRYHRSRGQS-QR-----------D-ICLIPSSAHGTNP 605 (954)
T ss_pred HHHHHHHHHHHHHHC---CCeEeecCCchHHHHHHHHHHH-HHHHHhcCCC-CC-----------C-EEEecccccccCH
Confidence 456789999999998 45554 4558888887888766 7899888873 43 4 4555557787765
Q ss_pred ccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHH
Q 002941 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (863)
Q Consensus 522 gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 601 (863)
.+....| +..+.+|... +..-| .
T Consensus 606 asa~~~G------------------------------ieVv~Vp~D~-------------------~G~iD--------l 628 (954)
T PRK12566 606 ASAQMAG------------------------------MRVVIVECDP-------------------DGNVD--------L 628 (954)
T ss_pred HHHHHCC------------------------------CEEEEeccCC-------------------CCCcC--------H
Confidence 4422211 1111122100 00011 2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (863)
++|++.+++ ..+++++|++.-. . .+|++. .-+++|.++|+++|+++++|=++. .+-.+. -.-.. +-
T Consensus 629 e~L~a~I~~-----~~~~laaVmiT~P-n-t~Gv~e---~~V~eI~~iah~~Galv~vDgA~~-~a~~~l-~~Pg~--~G 694 (954)
T PRK12566 629 DDLKAKAAA-----AGDRLSCLMITYP-S-THGVYE---EGIREICEVVHQHGGQVYMDGANL-NAQVGL-ARPAD--IG 694 (954)
T ss_pred HHHHHHhhc-----cCCCEEEEEEEec-C-cCceec---chHHHHHHHHHHcCCEEEEEeeCh-hhccCC-CChhh--cC
Confidence 456666642 3457777766532 2 344332 238999999999999999998884 211110 00112 34
Q ss_pred CcEEEec--cccC----CCCCCceeeeccHHHHHhhhcCC-------ccceeecccCCCccHHHHHHHHHHHHHhcChhh
Q 002941 682 PDIACYG--KLLT----GGVIPLAATLATNAVFDSFVGDS-------KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQT 748 (863)
Q Consensus 682 PDivt~s--KgLg----gG~~Pigav~~~~~i~~~l~~~~-------~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l 748 (863)
.|+++++ |.++ +|..=+|.+.+++.+...+.... +.+.-.......++.+-+.++..-+..+= .+
T Consensus 695 ADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG-~e- 772 (954)
T PRK12566 695 ADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMG-PQ- 772 (954)
T ss_pred CCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHHC-HH-
Confidence 6999875 8664 45233666677887776665321 00111122233344444444455455442 22
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ce---EEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE----
Q 002941 749 NHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GT---LCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR---- 820 (863)
Q Consensus 749 ~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl---~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~---- 820 (863)
..++......+..++.++|.+ ..+.. . .+. |. -+.+.+..-+ .. .......+.++|++.|+...
T Consensus 773 Lk~aa~~ailnAnYla~rL~~---~~~v~-~-~~~~~~~~hEfii~~~~l~--~~-~g~~~~dvakRL~d~Gihapt~~f 844 (954)
T PRK12566 773 LADASEVAILSANYLANQLGG---AFPVL-Y-RGRNERVAHECILDLRPLK--AQ-TGISEEDVAKRLMDYGFHAPTMSF 844 (954)
T ss_pred HHHHHHHHHHHHHHHHHHhHh---hCCCC-c-CCCCCCeeeEEEEEccccc--cc-cCCCHHHHHHHHHHCCcEEeEEee
Confidence 333344333344444434332 12221 1 221 11 1222222111 00 00124678999999888764
Q ss_pred ecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 002941 821 PLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEE 858 (863)
Q Consensus 821 p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~~~~ 858 (863)
|..+.+++.|.-..+++|||+++++|....++++++.+
T Consensus 845 Pv~~~LmIepTE~eskeEIDrf~eAL~~I~~e~~~v~~ 882 (954)
T PRK12566 845 PVPGTLMVEPTESESKAELDRFVEAMLSIRAEIGKVQE 882 (954)
T ss_pred ccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999999999888754
No 283
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.03 E-value=8.4e-09 Score=117.06 Aligned_cols=251 Identities=14% Similarity=0.069 Sum_probs=148.3
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
..++...+|+++|+++.+ .+.+++++||++|+..++...++ .| ..||+.+..||+.
T Consensus 47 ~gnPt~~~lE~~lA~l~g---~~~~~~~~sG~~Ai~~al~all~---------~G------------D~Vl~~~~~y~~t 102 (377)
T TIGR01324 47 RGTLTHFALQDAMCELEG---GAGCYLYPSGLAAVTNSILAFVK---------AG------------DHVLMVDSAYEPT 102 (377)
T ss_pred CCCccHHHHHHHHHHHhC---CCcEEEECcHHHHHHHHHHHhcC---------CC------------CEEEEcCCCcHHH
Confidence 346778899999999887 36789999999999999875421 12 5688888889875
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
....-... ..+ +. . +..+ +. .+
T Consensus 103 ~~~~~~~~--~~~------------gi--~---------v~~~-------------------------d~-~~------- 124 (377)
T TIGR01324 103 RYFCDIVL--KRM------------GV--D---------ITYY-------------------------DP-LI------- 124 (377)
T ss_pred HHHHHHHH--Hhc------------Cc--E---------EEEE-------------------------CC-CC-------
Confidence 32110000 000 00 0 0000 00 01
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.+. .+..+|++|.. .+..|...+ +++|.++|++||+++|+||+|. +|-.+... .
T Consensus 125 -~e~l~~~i~--------~~tklV~lesp-~Np~g~~~d----l~~I~~la~~~g~~livD~t~a-~g~~~~pl-----~ 184 (377)
T TIGR01324 125 -GEDIATLIQ--------PNTKVLFLEAP-SSITFEIQD----IPAIAKAARNPGIVIMIDNTWA-AGLLFKPL-----E 184 (377)
T ss_pred -HHHHHHhcC--------CCceEEEEECC-CCCCCcHHH----HHHHHHHHHHcCCEEEEECCCc-cccccCcc-----c
Confidence 023444442 24568888976 677775544 9999999999999999999994 44443322 2
Q ss_pred CCCcEEEe--ccccCCCC-CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHH
Q 002941 680 CVPDIACY--GKLLTGGV-IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (863)
Q Consensus 680 v~PDivt~--sKgLggG~-~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~ 756 (863)
...|+++. .|.++|.- .-.|+++++++.++.+... ...+....+|..+...+..|+.+. -..++..+++
T Consensus 185 ~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~------~~~~G~~l~p~~a~~~~rgl~tl~--~R~~~~~~~a 256 (377)
T TIGR01324 185 HGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREH------SYLMGQMVDADDAYTTLRGLRTLG--VRLKQHQESS 256 (377)
T ss_pred cCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHH------HHHhCCCCCHHHHHHHHhhhhhHH--HHHHHHHHHH
Confidence 34688865 79997520 2356778888877765421 112233456766666666665442 1134555555
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEccCCcCCCCchHHHHHHHHHHHH
Q 002941 757 RILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLRE 814 (863)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e 814 (863)
.++.++| +++|.|..| .|.|.|+.+++.... ...+.+|.+.|.-
T Consensus 257 ~~la~~L--------~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~------~~~~~~~~~~l~~ 318 (377)
T TIGR01324 257 LAIAKWL--------SEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLT------QKQVHAFLDHLQL 318 (377)
T ss_pred HHHHHHH--------HhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCC------HHHHHHHHHhCCc
Confidence 5555433 344433222 367889999996321 1234556665553
No 284
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=99.02 E-value=1.6e-08 Score=115.17 Aligned_cols=233 Identities=12% Similarity=0.098 Sum_probs=139.7
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
..++...+|+++++++.+. +.++.++||+.|+..++...++ .| ..||+...+|++.
T Consensus 50 ~~np~~~~lE~~lA~l~g~---~~~l~~~sG~~Ai~~~l~~ll~---------~G------------D~Vlv~~~~y~~~ 105 (385)
T PRK08574 50 EENPTLRPLEEALAKLEGG---VDALAFNSGMAAISTLFFSLLK---------AG------------DRVVLPMEAYGTT 105 (385)
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHhC---------CC------------CEEEEcCCCchhH
Confidence 4567788999999999873 5678889999999998875521 12 4688777777654
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
. ..+... ..+ +. . +..+ . .+
T Consensus 106 ~-~~~~~~--~~~------------g~----~-------v~~~-~--------------------------~d------- 125 (385)
T PRK08574 106 L-RLLKSL--EKF------------GV----K-------VVLA-Y--------------------------PS------- 125 (385)
T ss_pred H-HHHHHh--hcc------------Cc----E-------EEEE-C--------------------------CC-------
Confidence 2 211110 000 00 0 0000 0 01
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.+. +.++.+|++|.. .+..|.+++ +++|.++|++||+++|+||+++ .|-..... .+|
T Consensus 126 -~~~l~~~i~-------~~~tklV~ie~p-~NPtG~v~d----l~~I~~la~~~gi~livD~t~a-~~~~~~~l---~~G 188 (385)
T PRK08574 126 -TEDIIEAIK-------EGRTKLVFIETM-TNPTLKVID----VPEVAKAAKELGAILVVDNTFA-TPLLYRPL---RHG 188 (385)
T ss_pred -HHHHHHhcC-------ccCceEEEEECC-CCCCCEecC----HHHHHHHHHHcCCEEEEECCCC-ccccCChh---hhC
Confidence 123444442 224678888886 888887776 8899999999999999999983 32222211 133
Q ss_pred CCCcEEE--eccccCC-CCCCc-eeee-ccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 680 CVPDIAC--YGKLLTG-GVIPL-AATL-ATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 680 v~PDivt--~sKgLgg-G~~Pi-gav~-~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
.|+++ ++|.++| | -.+ |+++ .++++.+.+.... ...+...+|..++.++..|+.+.. ..++-.+
T Consensus 189 --aDivv~S~sK~l~g~~-d~~gG~vi~~~~~~~~~~~~~~------~~~g~~~~p~~a~l~l~~l~tL~~--R~~~~~~ 257 (385)
T PRK08574 189 --ADFVVHSLTKYIAGHN-DVVGGVAVAWSGEFLEELWEWR------RRLGTIMQPFEAYLVLRGLKTLEV--RFERQCR 257 (385)
T ss_pred --CcEEEeeCceeecCCC-CceeEEEEECcHHHHHHHHHHH------HhcCCCCCHHHHHHHHcccCcHHH--HHHHHHH
Confidence 58774 5799975 3 233 4344 4677777655311 112344568888888777776532 2333344
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEe--------------------cccceEEEEEEc
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRV--------------------VALGTLCAIELQ 792 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~v--------------------rg~Gl~~~iel~ 792 (863)
++.++.+ .++++|.|..| .|.|.|+.+++.
T Consensus 258 na~~la~--------~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~ 307 (385)
T PRK08574 258 NAMAIAE--------FLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVK 307 (385)
T ss_pred HHHHHHH--------HHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeC
Confidence 4444443 33455544322 257889999996
No 285
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=99.02 E-value=1.8e-08 Score=114.00 Aligned_cols=235 Identities=13% Similarity=0.061 Sum_probs=136.5
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +..+.++||++|+..++.+. . .| .+||+....|++
T Consensus 48 r~~~pt~~~le~~la~l~g~---~~~~~~~sG~~ai~~~~~ll-~---------~G------------d~Vl~~~~~y~~ 102 (366)
T PRK08247 48 RTGNPTRGVLEQAIADLEGG---DQGFACSSGMAAIQLVMSLF-R---------SG------------DELIVSSDLYGG 102 (366)
T ss_pred CCCCchHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHh-C---------CC------------CEEEEecCCcCc
Confidence 45677889999999999874 45788999999998765322 1 12 578988888887
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
......... .. .+. .+..++. .|
T Consensus 103 t~~~~~~~~--~~------------~G~-----------~v~~vd~--------------------------~d------ 125 (366)
T PRK08247 103 TYRLFEEHW--KK------------WNV-----------RFVYVNT--------------------------AS------ 125 (366)
T ss_pred HHHHHHHHh--hc------------cCc-----------eEEEECC--------------------------CC------
Confidence 421111000 00 000 0000100 01
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. +++.+|++|.. .+..| +...+++|.++|++||+++|+||++. .+-.+.. .
T Consensus 126 --~~~l~~~i~--------~~tklv~le~P-~NP~~----~~~dl~~I~~la~~~g~~lIvD~t~~-~~~~~~p-----~ 184 (366)
T PRK08247 126 --LKAIEQAIT--------PNTKAIFIETP-TNPLM----QETDIAAIAKIAKKHGLLLIVDNTFY-TPVLQRP-----L 184 (366)
T ss_pred --HHHHHHhcc--------cCceEEEEECC-CCCCC----cHHHHHHHHHHHHHcCCEEEEECCCc-cccccCc-----h
Confidence 133444442 24567777764 55543 45569999999999999999999982 1111111 1
Q ss_pred CCCCcEE--EeccccCCC-CCCceeeecc-HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 679 GCVPDIA--CYGKLLTGG-VIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 679 gv~PDiv--t~sKgLggG-~~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
....|++ .++|.++|. =.-.|+++++ +++++.+... ....+...+|..+..++..|+.+.. ..++..+
T Consensus 185 ~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~------~~~~g~~~s~~~a~l~~~~l~tl~~--r~~~~~~ 256 (366)
T PRK08247 185 EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYY------QNAAGAVLSPFDSWLLIRGMKTLAL--RMRQHEE 256 (366)
T ss_pred hcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHH------HHhcCCCCChHHHHHHHhccCcHHH--HHHHHHH
Confidence 1235776 568999751 1345667775 6776665421 1122344577777776666654321 1222222
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeE--ecccceEEEEEEc
Q 002941 755 ERRILRELWDLELIQQISSHRTVQR--VVALGTLCAIELQ 792 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~--vrg~Gl~~~iel~ 792 (863)
+.+. +.+.++++|.|.. ..|.|.|+.+++.
T Consensus 257 ~a~~--------l~~~L~~~p~v~~v~~P~~gg~~sf~~~ 288 (366)
T PRK08247 257 NAKA--------IAAFLNEQPGVTDVLYPGRGGMLSFRLQ 288 (366)
T ss_pred HHHH--------HHHHHHhCCCeeEEecCCcCcEEEEEEC
Confidence 2222 3445667787765 3557899999885
No 286
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=99.02 E-value=1.9e-08 Score=114.53 Aligned_cols=236 Identities=11% Similarity=0.086 Sum_probs=141.9
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +.+++++||++|+..++...++ .| .+|++...+|+|
T Consensus 48 R~~~pt~~~L~~~lA~l~g~---~~~i~~~sg~~Ai~~~l~~l~~---------~G------------D~Vl~~~~~y~~ 103 (386)
T PRK08045 48 RRGNPTRDVVQRALAELEGG---AGAVLTNTGMSAIHLVTTVFLK---------PG------------DLLVAPHDCYGG 103 (386)
T ss_pred CCCCccHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHHcC---------CC------------CEEEEcCCCcHH
Confidence 45677788999999998773 4699999999999988875421 12 568888888876
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.......+... .+. . +..+ + ..|
T Consensus 104 ~~~~~~~~~~~--------------~gi--~---------v~~v--d------------------------~~d------ 126 (386)
T PRK08045 104 SYRLFDSLAKR--------------GCY--R---------VLFV--D------------------------QGD------ 126 (386)
T ss_pred HHHHHHHHHhh--------------CCe--E---------EEEe--C------------------------CCC------
Confidence 43211111000 000 0 0000 0 001
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. .+..+|++|.. .+..|.+.+ +++|.++|+++|+++|+||++... ... ..+
T Consensus 127 --~e~l~~~l~--------~~tklV~l~sP-~NPtG~v~d----i~~I~~ia~~~g~~vivDeay~~~-~~~-----~pl 185 (386)
T PRK08045 127 --EQALRAALA--------EKPKLVLVESP-SNPLLRVVD----IAKICHLAREAGAVSVVDNTFLSP-ALQ-----NPL 185 (386)
T ss_pred --HHHHHHhcc--------cCCeEEEEECC-CCCCCEecC----HHHHHHHHHHcCCEEEEECCCCcc-ccC-----Cch
Confidence 123444442 23456777765 788887775 889999999999999999998532 111 112
Q ss_pred CCCCcEEE--eccccCC--CCCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHH
Q 002941 679 GCVPDIAC--YGKLLTG--GVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (863)
Q Consensus 679 gv~PDivt--~sKgLgg--G~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~ 753 (863)
....|+++ ++|.++| + ...|++++ ++++.+.+... ....+...+|+.+..++..|+-+.. ..++..
T Consensus 186 ~~gaDivv~S~tK~l~G~~d-~~~G~vi~~~~~~~~~l~~~------~~~~g~~~~p~~~~l~~rgl~tl~~--R~~~~~ 256 (386)
T PRK08045 186 ALGADLVLHSCTKYLNGHSD-VVAGVVIAKDPDVVTELAWW------ANNIGVTGGAFDSYLLLRGLRTLVP--RMELAQ 256 (386)
T ss_pred hhCCCEEEeecceeccCCCC-ceeEEEEeCcHHHHHHHHHH------HHhcCCCCCHHHHHHHHhhhccHHH--HHHHHH
Confidence 23458774 6898874 3 34666666 57776655421 1122344678888777777765421 123444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEcc
Q 002941 754 PERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (863)
Q Consensus 754 ~~~~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~ 793 (863)
++...+.+ .+++||.|..| .|.|.|+.+++..
T Consensus 257 ~na~~la~--------~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~ 306 (386)
T PRK08045 257 RNAQAIVK--------YLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG 306 (386)
T ss_pred HHHHHHHH--------HHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecC
Confidence 44444444 34556655444 3678899999963
No 287
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.02 E-value=1.6e-08 Score=116.61 Aligned_cols=163 Identities=13% Similarity=0.098 Sum_probs=105.9
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
..++...+|+++|+++.+. +.+++++||++|+..+++...+ +| .+||+....|+|.
T Consensus 55 ~~~pt~~~Le~~lA~l~g~---~~~l~~ssG~~Ai~~al~al~~---------~G------------d~Vl~~~~~Y~~t 110 (425)
T PRK06084 55 IMNPTNDVLEQRVAALEGG---VGALAVASGMAAITYAIQTIAE---------AG------------DNIVSVAKLYGGT 110 (425)
T ss_pred CCCchHHHHHHHHHHHhCC---CceeEehhHHHHHHHHHHHHhC---------CC------------CEEEEeCCCcchH
Confidence 4567788999999999873 5678899999999999986631 12 4689888999874
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
. ..+... .+.+ + +....++ ..|
T Consensus 111 ~-~~~~~~-l~~~------------g-------------i~v~~~d------------------------~~d------- 132 (425)
T PRK06084 111 Y-NLLAHT-LPRI------------G-------------IETRFAA------------------------HDD------- 132 (425)
T ss_pred H-HHHHHh-cccc------------e-------------eEEEEEC------------------------CCC-------
Confidence 3 222110 0000 0 0000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.+. +++.+|++|.. ++..|.+.+ +++|.++|++||+++|+||++. .+... ..+.
T Consensus 133 -~e~le~ai~--------~~tklV~lesp-~NPtG~v~d----l~~I~~la~~~~i~vVvD~a~a-~~~~~-----~p~~ 192 (425)
T PRK06084 133 -IAALEALID--------ERTKAVFCESI-GNPAGNIID----IQALADAAHRHGVPLIVDNTVA-TPVLC-----RPFE 192 (425)
T ss_pred -HHHHHHHhc--------cCCcEEEEeCC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-ccccC-----Chhh
Confidence 234555553 24568888886 889997776 8999999999999999999994 32222 2223
Q ss_pred CCCcEEE--eccccCCCCCCceeeecc
Q 002941 680 CVPDIAC--YGKLLTGGVIPLAATLAT 704 (863)
Q Consensus 680 v~PDivt--~sKgLggG~~Pigav~~~ 704 (863)
..+|+++ ++|.++|.-..+|++++.
T Consensus 193 ~gaDivv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 193 HGADIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred cCCCEEEECchhcccccccceeEEEEe
Confidence 3578874 579998633667776663
No 288
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=99.02 E-value=2.3e-08 Score=114.10 Aligned_cols=147 Identities=15% Similarity=0.107 Sum_probs=87.6
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVI 696 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLggG~~ 696 (863)
++.+|++|.. .+..|.+.+ +++|.++|++||+++|+||++. .+...... .+ .+|+++ ++|.++|.-.
T Consensus 146 ~tklV~ie~p-~NptG~v~d----l~~I~~la~~~gi~livD~t~~-~~~~~~pl---~~--g~Divv~S~sK~~~g~g~ 214 (390)
T PRK08133 146 NTKLFFLETP-SNPLTELAD----IAALAEIAHAAGALLVVDNCFC-TPALQQPL---KL--GADVVIHSATKYLDGQGR 214 (390)
T ss_pred CCeEEEEECC-CCCCCCcCC----HHHHHHHHHHcCCEEEEECCCc-ccccCCch---hh--CCcEEEeecceeecCCcc
Confidence 4567888875 788887765 8999999999999999999984 22221111 12 358875 5799976325
Q ss_pred Cc-eeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 697 PL-AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 697 Pi-gav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
.+ |++++++++++.+... ........+|..+..++..++.+.. ..++..++...+.+ .++++|
T Consensus 215 ~~GG~vv~~~~~~~~~~~~------~~~~g~~~~~~~a~~~l~gl~tl~~--R~~~~~~~a~~la~--------~L~~~p 278 (390)
T PRK08133 215 VLGGAVVGSKELMEEVFGF------LRTAGPTLSPFNAWVFLKGLETLSL--RMEAHSANALALAE--------WLEAHP 278 (390)
T ss_pred eEeEEEEcCHHHHHHHHHH------HHHhCCCCCHHHHHHHHcccchHHH--HHHHHHHHHHHHHH--------HHHhCC
Confidence 66 5666777776654421 1112233466666665555543321 12233333333333 344454
Q ss_pred CeeE------------------ecccceEEEEEEc
Q 002941 776 TVQR------------------VVALGTLCAIELQ 792 (863)
Q Consensus 776 ~v~~------------------vrg~Gl~~~iel~ 792 (863)
.|.. ..|.|.|+.+++.
T Consensus 279 ~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~ 313 (390)
T PRK08133 279 GVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVK 313 (390)
T ss_pred CeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEc
Confidence 4432 2467889999996
No 289
>PRK07503 methionine gamma-lyase; Provisional
Probab=99.01 E-value=2.4e-08 Score=114.50 Aligned_cols=150 Identities=15% Similarity=0.116 Sum_probs=95.9
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCC-CC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG-GV 695 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLgg-G~ 695 (863)
++.+|++|.. .+..|.+++ +++|.++|++||+++|+|+++.. +..+.. .+...|+++ ++|.++| |-
T Consensus 150 ~tklV~le~p-~NPtG~~~d----i~~I~~la~~~gi~lIvD~a~a~-~~~~~~-----l~~g~Di~v~S~tK~l~g~gd 218 (403)
T PRK07503 150 KTRMVYFETP-ANPNMRLVD----IAAVAEIAHGAGAKVVVDNTYCT-PYLQRP-----LELGADLVVHSATKYLGGHGD 218 (403)
T ss_pred cCcEEEEeCC-CCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcc-cccCCc-----hhhCCCEEEccccccccCCCc
Confidence 4567888865 788887766 89999999999999999999952 223322 233568775 5799986 32
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
.-.|+++.++++++.+.... ......+..+|+.++.++..|+.+.. ..++..++...+.++ ++++|
T Consensus 219 ~~gG~v~~~~~l~~~l~~~~----~~~~~g~~~s~~~a~l~l~~L~tl~~--r~~~~~~na~~~a~~--------L~~~p 284 (403)
T PRK07503 219 ITAGLVVGGKALADRIRLEG----LKDMTGAVMSPFDAFLLMRGLKTLAL--RMDRHCASAQAVAEW--------LARHP 284 (403)
T ss_pred eeEEEEEcCHHHHHHHHhhh----HHhCcCCCCCHHHHHHHHcCcchHHH--HHHHHHHHHHHHHHH--------HHhCC
Confidence 45677888888888765210 01112356688888888777775531 123333444444443 33444
Q ss_pred CeeEe------------------cccceEEEEEEcc
Q 002941 776 TVQRV------------------VALGTLCAIELQA 793 (863)
Q Consensus 776 ~v~~v------------------rg~Gl~~~iel~~ 793 (863)
.|..| +|.|.++.+++..
T Consensus 285 ~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~ 320 (403)
T PRK07503 285 AVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKG 320 (403)
T ss_pred CccEEECCCCCCCccHHHHHHhCCCCCceEEEEECC
Confidence 33322 3568899999863
No 290
>PLN02397 aspartate transaminase
Probab=99.01 E-value=8.4e-08 Score=110.75 Aligned_cols=202 Identities=14% Similarity=0.126 Sum_probs=117.3
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC---cchhhhc-CCCCcEE---Eecccc
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL-GCVPDIA---CYGKLL 691 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~---~~a~e~~-gv~PDiv---t~sKgL 691 (863)
.++.++..| ++..|.+. +.+.+++|.++|++||+++|.||++.+|...|. ......+ ....+++ +|||.+
T Consensus 195 ~~~i~~~~P--~NPTG~v~-s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~ 271 (423)
T PLN02397 195 SFVLLHACA--HNPTGVDP-TPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNM 271 (423)
T ss_pred CEEEEeCCC--CCCCCCCC-CHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccC
Confidence 444455556 88889655 788899999999999999999999998843221 1111111 1112344 679999
Q ss_pred C-CCCCCceeee---ccHHHHHhhhcCCccceeecccCC-CccHHHHHHHHHHHHHhcChh----h---HHhHHHHHHHH
Q 002941 692 T-GGVIPLAATL---ATNAVFDSFVGDSKLKALLHGHSY-SAHALGCAAAAKSIKWFKDPQ----T---NHNIIPERRIL 759 (863)
Q Consensus 692 g-gG~~Pigav~---~~~~i~~~l~~~~~~~~~~~~~T~-~~~pla~AAalAaL~~l~~~~----l---~~~l~~~~~~l 759 (863)
+ .| +.+|+++ .++++++.+...- .. ....++ +.+.++++++.+.|+ +++ + .+++.+..+..
T Consensus 272 ~~~G-~RvG~~v~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~q~~~~~~L~---~~~~~~~~~~~~~~~~~~~~~r 344 (423)
T PLN02397 272 GLYG-ERVGALSVVCKSADVAVRVKSQL--KL-IARPMYSNPPIHGASIVATILG---DPELFSEWTKELKGMADRIISM 344 (423)
T ss_pred CCcc-ccceEEEEEeCCHHHHHHHHHHH--HH-HHhcccCCCcHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHH
Confidence 8 68 8999984 3566554332100 00 011222 334556655555553 432 2 23333444444
Q ss_pred HHHHHHHHHHHHhcCC---CeeEecccceEEE-EEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecCCEEEEecCCCC
Q 002941 760 RELWDLELIQQISSHR---TVQRVVALGTLCA-IELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLGNVIYLMCGPCS 834 (863)
Q Consensus 760 ~~~l~~~l~~~~~~~p---~v~~vrg~Gl~~~-iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g~~lr~~ppl~~ 834 (863)
++.+.+. +.++. .+..+...|.|+. +.+. ..+++.|+ +.||++.+.| |+.. ...
T Consensus 345 r~~l~~~----L~~~~~~~~~~~~~p~gg~fl~~~l~-------------~~~~~~Ll~~~~V~v~~~~---Ri~~-~~~ 403 (423)
T PLN02397 345 RQKLYDA----LEARGSPGDWSHITKQIGMFSFTGLN-------------KEQVDRMTKEYHIYMTRDG---RISM-AGL 403 (423)
T ss_pred HHHHHHH----HHhcCCCCCCCcccCCceEEEecCCC-------------HHHHHHHHHhCCEEECCCC---eEEE-eeC
Confidence 4444333 33332 1223345555544 4331 23666665 6699997654 5432 248
Q ss_pred cHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~ 851 (863)
+++.+++++++|.++++
T Consensus 404 ~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 404 SSKNVPYLADAIHAVVT 420 (423)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999874
No 291
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=99.01 E-value=1.5e-08 Score=116.63 Aligned_cols=164 Identities=13% Similarity=0.095 Sum_probs=108.5
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+ .+.+++++||++|+..+++..++ .| .+||+....|+|
T Consensus 53 r~~~p~~~~le~~lA~l~g---~~~~v~~~sG~~Ai~~al~~l~~---------~G------------d~Vl~~~~~y~~ 108 (418)
T TIGR01326 53 RLMNPTTDVLEQRIAALEG---GVAALAVASGQAAITYAILNLAQ---------AG------------DNIVSSSYLYGG 108 (418)
T ss_pred CCCChhHHHHHHHHHHHhC---CCeEEEEccHHHHHHHHHHHHhC---------CC------------CEEEEECCCcHH
Confidence 3567788999999999987 36789999999999999986631 12 568888888877
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.. ..+.-.- ... |+....+|. .|
T Consensus 109 t~-~~~~~~~-------------~~~-------------G~~v~~v~~------------------------~d------ 131 (418)
T TIGR01326 109 TY-NLFKHTL-------------KRL-------------GIEVRFVDP------------------------DD------ 131 (418)
T ss_pred HH-HHHHHHH-------------HHc-------------CcEEEEECC------------------------CC------
Confidence 42 1111000 000 000011110 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. +++.+|++|.. ++..|.+.+ +++|.++|++||+++|+||++. .+.. ...+
T Consensus 132 --~~~l~~~l~--------~~t~~V~le~p-~NPtg~v~d----l~~I~~la~~~~i~livD~t~~-~~~~-----~~~l 190 (418)
T TIGR01326 132 --PEEFEKAID--------ENTKAVFAETI-GNPAINVPD----IEAIAEVAHAHGVPLIVDNTFA-TPYL-----CRPI 190 (418)
T ss_pred --HHHHHHhcC--------cCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-hhhc-----CCch
Confidence 133444442 24678888986 888887665 8999999999999999999984 3211 2222
Q ss_pred CCCCcEE--EeccccCC-CCCCceeeeccH
Q 002941 679 GCVPDIA--CYGKLLTG-GVIPLAATLATN 705 (863)
Q Consensus 679 gv~PDiv--t~sKgLgg-G~~Pigav~~~~ 705 (863)
...+|++ +++|.++| | .++|++++++
T Consensus 191 ~~g~Divv~S~sK~l~g~G-~~lGg~v~~~ 219 (418)
T TIGR01326 191 DHGADIVVHSATKYIGGHG-TAIGGVIVDG 219 (418)
T ss_pred hcCCeEEEECccccccCCc-cceEEEEEec
Confidence 3347987 56899987 6 8999988854
No 292
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.00 E-value=3.7e-08 Score=113.74 Aligned_cols=162 Identities=15% Similarity=0.118 Sum_probs=105.1
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
..++...+|+++|+++.+. +.+++++||+.|++.+++..++ +| .+||+....|+|.
T Consensus 60 ~~~p~~~~le~~lA~l~g~---~~al~~~SG~~Ai~~al~all~---------pG------------d~VIv~~~~y~~t 115 (427)
T PRK05994 60 ITNPTNAVLEERVAALEGG---TAALAVASGHAAQFLVFHTLLQ---------PG------------DEFIAARKLYGGS 115 (427)
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHHhC---------CC------------CEEEEecCcchhH
Confidence 3466788999999999874 5688999999999999986631 22 5788888888775
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
.......- ...+ +....++ ..|
T Consensus 116 ~~~~~~~~--------------~~~G-------------~~v~~vd------------------------~~d------- 137 (427)
T PRK05994 116 INQFGHAF--------------KSFG-------------WQVRWAD------------------------ADD------- 137 (427)
T ss_pred HHHHHHHH--------------HhcC-------------cEEEEEC------------------------CCC-------
Confidence 21100000 0000 0000000 001
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.+. .++.+|++|.. .+..|.+.+ +++|.++|++||+++|+||+++ . + .....+.
T Consensus 138 -~~~l~~ai~--------~~tklV~vesp-~NptG~v~d----l~~I~~la~~~gi~livD~a~a-~---~--~~~~pl~ 197 (427)
T PRK05994 138 -PASFERAIT--------PRTKAIFIESI-ANPGGTVTD----IAAIAEVAHRAGLPLIVDNTLA-S---P--YLIRPIE 197 (427)
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCcc-c---c--ccCCccc
Confidence 133444442 24678888886 888898776 8999999999999999999995 2 1 1223344
Q ss_pred CCCcEEE--eccccCCCCCCceeeec
Q 002941 680 CVPDIAC--YGKLLTGGVIPLAATLA 703 (863)
Q Consensus 680 v~PDivt--~sKgLggG~~Pigav~~ 703 (863)
..+|+++ ++|.++|---++|++++
T Consensus 198 ~gaDivv~S~tK~lgg~~~~~gG~v~ 223 (427)
T PRK05994 198 HGADIVVHSLTKFLGGHGNSMGGIIV 223 (427)
T ss_pred cCCcEEEEcCccccCCCCCcEEEEEE
Confidence 5689886 57999862146676555
No 293
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=99.00 E-value=2.1e-08 Score=114.69 Aligned_cols=147 Identities=15% Similarity=0.141 Sum_probs=93.4
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCC-CC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTG-GV 695 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLgg-G~ 695 (863)
+..+|++|-. .+..|.+.+ +++|.++|+++|+++|+||++.. +...... ....|++++ +|.++| |
T Consensus 150 ~tklV~lesp-~NptG~v~d----l~~I~~la~~~gi~lvvD~a~a~-~~~~~~~-----~~gaDivv~S~sK~l~g~g- 217 (398)
T PRK07504 150 NTKVFFLESP-TNPTLEVID----IAAVAKIANQAGAKLVVDNVFAT-PLFQKPL-----ELGAHIVVYSATKHIDGQG- 217 (398)
T ss_pred CceEEEEECC-CCCCcEecC----HHHHHHHHHHcCCEEEEECCccc-cccCCch-----hhCCCEEEeeccccccCCc-
Confidence 4567777765 788887776 99999999999999999999852 2222211 223688755 799975 5
Q ss_pred CCce-eeeccHHHHH-hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 696 IPLA-ATLATNAVFD-SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 696 ~Pig-av~~~~~i~~-~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
.++| +++++++.+. .+... ........+|..++.++..|+.+.. ..++..++..++.+.| ++
T Consensus 218 ~~~GG~vv~~~~~i~~~~~~~------~~~~g~~~s~~~A~~~l~~L~tl~~--R~~~~~~na~~la~~L--------~~ 281 (398)
T PRK07504 218 RCLGGVVLSDKAWIEEHLQDY------FRHTGPSLSPFNAWTLLKGLETLPV--RVRQQTESAAAIADFL--------AG 281 (398)
T ss_pred cceEEEEEeCcHHHHHHHHHH------HHHhCCCCCHHHHHHHHhccchHHH--HHHHHHHHHHHHHHHH--------Hc
Confidence 6775 5666766554 23210 1112235688888888888887632 2344445555555433 34
Q ss_pred CCCee------------------EecccceEEEEEEcc
Q 002941 774 HRTVQ------------------RVVALGTLCAIELQA 793 (863)
Q Consensus 774 ~p~v~------------------~vrg~Gl~~~iel~~ 793 (863)
+|.|. ..+|.|.|+.+++..
T Consensus 282 ~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 319 (398)
T PRK07504 282 HPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKG 319 (398)
T ss_pred CCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCC
Confidence 44332 124668999999963
No 294
>PRK07582 cystathionine gamma-lyase; Validated
Probab=98.99 E-value=4e-08 Score=111.23 Aligned_cols=145 Identities=15% Similarity=0.074 Sum_probs=91.1
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc-cccccCCcchhhhcCCCCcEEE--eccccCC--
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIAC--YGKLLTG-- 693 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDivt--~sKgLgg-- 693 (863)
++..|++|.. .+.+|.+.+ +++|.++|+++|+++|+||++. .+| . .-+...+|+++ ++|.++|
T Consensus 132 ~t~lV~le~p-~NPtg~v~d----i~~I~~~a~~~g~~lvVD~t~~~~~~---~----~p~~~g~Divv~S~sK~l~G~~ 199 (366)
T PRK07582 132 GADLVLAETP-SNPGLDVCD----LAALAAAAHAAGALLVVDNTTATPLG---Q----RPLELGADLVVASDTKALTGHS 199 (366)
T ss_pred CceEEEEECC-CCCCCCccC----HHHHHHHHHHcCCEEEEECCCCCccc---c----CchhcCCcEEEecccccccCCC
Confidence 3456666664 677776554 8999999999999999999983 222 1 11123468874 5799975
Q ss_pred CCCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 694 GVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 694 G~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
| +.+|++++ ++++++.+... .....-..+|..+..++..|+.+. -..++..+++..+.++ ++
T Consensus 200 g-~~~G~v~~~~~~l~~~l~~~------~~~~g~~~~~~~a~l~~r~l~tl~--~R~~~~~~na~~la~~--------L~ 262 (366)
T PRK07582 200 D-LLLGYVAGRDPELMAAVERW------RLLAGAIPGPFEAWLAHRSLGTLG--LRFARQCANALAVAEL--------LA 262 (366)
T ss_pred C-eeEEEEEcCcHHHHHHHHHH------HHHhCCCCCHHHHHHHHhccccHH--HHHHHHHHHHHHHHHH--------HH
Confidence 4 56787886 47777766531 011122346777776666665432 1224555555555543 44
Q ss_pred cCCCeeEec------------------ccceEEEEEEc
Q 002941 773 SHRTVQRVV------------------ALGTLCAIELQ 792 (863)
Q Consensus 773 ~~p~v~~vr------------------g~Gl~~~iel~ 792 (863)
++|.|..|. |.|.++.+++.
T Consensus 263 ~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~ 300 (366)
T PRK07582 263 GHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA 300 (366)
T ss_pred hCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC
Confidence 556554443 57889999996
No 295
>PRK06460 hypothetical protein; Provisional
Probab=98.99 E-value=3.9e-08 Score=111.73 Aligned_cols=148 Identities=16% Similarity=0.117 Sum_probs=92.6
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCC-C
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGG-V 695 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG-~ 695 (863)
++.+|++|.. ++..|.+.+ +++|.++|++||+++|+||++..+ .... .+....|++ +++|.++|. -
T Consensus 130 ~tklV~l~sp-~NPtG~v~d----~~~I~~la~~~g~~vivDea~~~~-~~~~-----~l~~~~divv~S~sK~l~G~~~ 198 (376)
T PRK06460 130 RYDVVFVENI-TNPLLRVVD----ITELSKVCKENGSILIVDATFSTP-INQK-----PLELGADIVVHSASKFLAGHND 198 (376)
T ss_pred CceEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCcCcc-ccCC-----hhhcCCCEEEeecceeccCCCC
Confidence 4567777876 889997776 678999999999999999998532 1111 111235776 578998741 0
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
.-+|++++++++++.+... ...++.+.+|..+..++..++.++ ...+++.++..++.+.| +++|
T Consensus 199 ~~~G~~~~~~~l~~~l~~~------~~~~g~~~~~~~a~~~l~~~~~l~--~r~~~~~~n~~~l~~~L--------~~~p 262 (376)
T PRK06460 199 VIAGLAAGYGKLLNVIDQM------RRTLGTSLDPHAAYLTLRGIKTLK--IRMDVINRNAEQIAEFL--------EGHP 262 (376)
T ss_pred ceEEEEecCHHHHHHHHHH------HHhcCCCCCHHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHH--------HcCC
Confidence 3477888999998877631 112233355655555555555553 22445555555555433 3334
Q ss_pred CeeE------------------ecccceEEEEEEcc
Q 002941 776 TVQR------------------VVALGTLCAIELQA 793 (863)
Q Consensus 776 ~v~~------------------vrg~Gl~~~iel~~ 793 (863)
.|.. ..|.|.|+.+++..
T Consensus 263 ~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~ 298 (376)
T PRK06460 263 KVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNG 298 (376)
T ss_pred CccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 3321 14789999999964
No 296
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=98.99 E-value=7.1e-08 Score=110.60 Aligned_cols=147 Identities=12% Similarity=0.105 Sum_probs=91.7
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCC-CCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTG-GVI 696 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLgg-G~~ 696 (863)
+.+|++|-. .+..|.+.. +++|.++|++||+++|+||++..-... ..+ ....|++++ +|.++| |-.
T Consensus 146 tklV~l~~P-~NPtG~v~d----l~~I~~la~~~gi~vIvD~a~a~~~~~-~pl-----~~gaDivv~S~tK~l~g~~~~ 214 (405)
T PRK08776 146 PKLVLIETP-SNPLLRITD----LRFVIEAAHKVGALTVVDNTFLSPALQ-KPL-----EFGADLVLHSTTKYINGHSDV 214 (405)
T ss_pred CeEEEEECC-CCCCCccCC----HHHHHHHHHHcCCEEEEECCCcccccC-Ccc-----cccCCEEEecCceeecCCCCc
Confidence 455666654 688887654 899999999999999999998532111 111 123588765 598874 114
Q ss_pred Cceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 697 PLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 697 Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
-.|++++ ++++.+.+... .....+..+|+.+.+++..++.++. ..++..++...+.++ ++++|
T Consensus 215 ~~G~vv~~~~~l~~~l~~~------~~~~g~~~s~~~a~l~~~gl~tl~~--r~~~~~~na~~la~~--------L~~~p 278 (405)
T PRK08776 215 VGGAVVARDAELHQQLVWW------ANALGLTGSPFDAFLTLRGLRTLDA--RLRVHQENADAIAAL--------LDGHA 278 (405)
T ss_pred eEEEEEeCCHHHHHHHHHH------HHhcCCCCCHHHHHHHHhhhCcHHH--HHHHHHHHHHHHHHH--------HHcCC
Confidence 4566665 57776665421 1112234689999888877776532 344555555555443 34455
Q ss_pred CeeE------------------ecccceEEEEEEcc
Q 002941 776 TVQR------------------VVALGTLCAIELQA 793 (863)
Q Consensus 776 ~v~~------------------vrg~Gl~~~iel~~ 793 (863)
.|.. ..|.|.|+.+++..
T Consensus 279 ~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 314 (405)
T PRK08776 279 AVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEG 314 (405)
T ss_pred CeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcC
Confidence 4432 24788999999963
No 297
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=98.96 E-value=1.7e-07 Score=106.50 Aligned_cols=305 Identities=15% Similarity=0.135 Sum_probs=165.0
Q ss_pred HHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCc
Q 002941 421 LARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDT 500 (863)
Q Consensus 421 V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~ 500 (863)
-.+++.+.+..... ....+...+++++|++.++ .+++++++||++|+..+++.+. . + .|
T Consensus 13 ~~~~~~~~l~~~~~----~g~~~~~~~~e~~la~~~g---~~~~v~~~sgt~al~~~l~~~~--~----~--~G------ 71 (375)
T PRK11706 13 ELDYIQQAMSSGKL----CGDGGFTRRCQQWLEQRFG---SAKVLLTPSCTAALEMAALLLD--I----Q--PG------ 71 (375)
T ss_pred HHHHHHHHHHcCCc----cCCCHHHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHhC--C----C--CC------
Confidence 35666666654322 1224566888899999887 4689999999999998887551 0 0 12
Q ss_pred cccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcccccccc
Q 002941 501 TEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580 (863)
Q Consensus 501 ~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~ 580 (863)
..||+...+|.+........+.... +++. -++.+
T Consensus 72 ------d~Viv~~~t~~~~~~~~~~~G~~~v---------------~~d~-------------d~~~~------------ 105 (375)
T PRK11706 72 ------DEVIMPSYTFVSTANAFVLRGAKIV---------------FVDI-------------RPDTM------------ 105 (375)
T ss_pred ------CEEEECCCCcHHHHHHHHHcCCEEE---------------EEec-------------CCCcC------------
Confidence 5688888777765332222111000 0000 00000
Q ss_pred ccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEe
Q 002941 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD 660 (863)
Q Consensus 581 ~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~D 660 (863)
..| .+.+++.+. + ++.+|+ ++ + ..|.... +++|.++|++||+++|.|
T Consensus 106 ---------~~d--------~~~le~~i~-------~-~tk~i~--~~-~-~~G~~~~----~~~i~~la~~~~i~vIeD 152 (375)
T PRK11706 106 ---------NID--------ETLIEAAIT-------P-KTRAIV--PV-H-YAGVACE----MDTIMALAKKHNLFVVED 152 (375)
T ss_pred ---------CcC--------HHHHHHhcC-------C-CCeEEE--Ee-C-CCCCccC----HHHHHHHHHHcCCEEEEE
Confidence 001 234555442 1 234444 22 2 3454443 789999999999999999
Q ss_pred ccccccccc--CCcchhhhcCCCCcEEEec----cccCCCCCCceeeeccHHHHHhhh---cCCcc------------ce
Q 002941 661 EVFTGFWRL--GVETTADLLGCVPDIACYG----KLLTGGVIPLAATLATNAVFDSFV---GDSKL------------KA 719 (863)
Q Consensus 661 EV~TGfGRt--G~~~a~e~~gv~PDivt~s----KgLggG~~Pigav~~~~~i~~~l~---~~~~~------------~~ 719 (863)
++|+ +|.. |. ..|---|+.+|| |.++.| .-.+.+..++++++.+. ..+.. ..
T Consensus 153 ~a~a-~g~~~~~~-----~~g~~~~~~~~Sf~~~K~l~~g-~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 225 (375)
T PRK11706 153 AAQG-VMSTYKGR-----ALGTIGHIGCFSFHETKNYTAG-EGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTW 225 (375)
T ss_pred Cccc-cccccCCe-----eeecCcCEEEEeCCCCcccccc-CCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCccee
Confidence 9994 5542 22 122234888888 999654 22334455677776433 11100 00
Q ss_pred eecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC---Cee------EecccceEEEEE
Q 002941 720 LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR---TVQ------RVVALGTLCAIE 790 (863)
Q Consensus 720 ~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p---~v~------~vrg~Gl~~~ie 790 (863)
...+.++-.+.+.+|.+++-|+.+++ ..++-+++.++..+ .+++.+ .+. .......++.+.
T Consensus 226 ~~~g~~~~~~~~~aa~~~~ql~~l~~--~~~~R~~~~~~~~~--------~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (375)
T PRK11706 226 VDIGSSYLPSELQAAYLWAQLEAADR--INQRRLALWQRYYD--------ALAPLAEAGRIELPSIPDDCKHNAHMFYIK 295 (375)
T ss_pred eecccccCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--------HhcCCCcCCeeecCCCCCCCceeeEEEEEE
Confidence 11244455567777888888876532 12222333333333 223332 111 011112244454
Q ss_pred EccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----------------C----------CEEEEecCCCCcHHHHHHHH
Q 002941 791 LQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----------------G----------NVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 791 l~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----------------g----------~~lr~~ppl~~t~eeid~~v 843 (863)
+.+.. ...++.+.|.++||.++.. + +.+.+-.....+++|++.++
T Consensus 296 ~~~~~--------~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~ 367 (375)
T PRK11706 296 LRDLE--------DRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVI 367 (375)
T ss_pred ECCcC--------CHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHH
Confidence 43221 2567889999999986410 0 22333222236899999999
Q ss_pred HHHHHHH
Q 002941 844 LKLYQRL 850 (863)
Q Consensus 844 ~~L~~~l 850 (863)
++|.+.+
T Consensus 368 ~~i~~~~ 374 (375)
T PRK11706 368 DTILEFF 374 (375)
T ss_pred HHHHHHh
Confidence 9988764
No 298
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=98.94 E-value=4.1e-07 Score=113.16 Aligned_cols=320 Identities=13% Similarity=0.018 Sum_probs=182.6
Q ss_pred hHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccc
Q 002941 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522 (863)
Q Consensus 443 ~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~g 522 (863)
+...++.++|+++++ .+.|.|.++.+..-|-|+-++++.|++.+|.. . +++|....+-||+-..
T Consensus 568 ~~~~~~r~~la~i~g---~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~-~------------r~~vli~~~aH~sn~a 631 (993)
T PLN02414 568 EMFEDLGDLLCEITG---FDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDH-H------------RNVCIIPVSAHGTNPA 631 (993)
T ss_pred HHHHHHHHHHHHHhC---CCeEEEcCCCcHHHHHHHHHHHHHHHhccCCC-C------------CCEEEeCCCcCccCHH
Confidence 445689999999998 57888777666444444444446676555541 1 3467777788998665
Q ss_pred cceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHH
Q 002941 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602 (863)
Q Consensus 523 als~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 602 (863)
.....|- .+..++..... .-| .+
T Consensus 632 ~a~~~G~----------------------------~vv~v~~d~~G---------------------~vD--------le 654 (993)
T PLN02414 632 SAAMCGM----------------------------KIVVVGTDAKG---------------------NIN--------IE 654 (993)
T ss_pred HHHHCCC----------------------------EEEEeccCCCC---------------------CcC--------HH
Confidence 5443210 01111111000 011 34
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCC
Q 002941 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP 682 (863)
Q Consensus 603 ~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~P 682 (863)
+|++.++. +.+++++|++-=. .+.||...+ +++|.++|+++|+++++|=++. .+-.|. ..-...-.
T Consensus 655 ~L~~~i~~-----~~~~ta~V~vt~p-Sn~gg~e~~----I~eI~~iah~~Galv~vDgAq~-~a~~~l---~~p~~~Ga 720 (993)
T PLN02414 655 ELRKAAEA-----HKDNLAALMVTYP-STHGVYEEG----IDEICDIIHDNGGQVYMDGANM-NAQVGL---TSPGFIGA 720 (993)
T ss_pred HHHHHHhc-----cCCCeEEEEEECC-Cccccccch----HHHHHHHHHHcCCEEEEEecCH-HhccCc---CCccccCC
Confidence 56666642 2346777766543 677887766 9999999999999999999884 211111 11112346
Q ss_pred cEEEe--ccccC----CCCCCceeeeccHHHHHhhhcCC--cccee------ecccC----CCccHHHHHHHHHHHHHhc
Q 002941 683 DIACY--GKLLT----GGVIPLAATLATNAVFDSFVGDS--KLKAL------LHGHS----YSAHALGCAAAAKSIKWFK 744 (863)
Q Consensus 683 Divt~--sKgLg----gG~~Pigav~~~~~i~~~l~~~~--~~~~~------~~~~T----~~~~pla~AAalAaL~~l~ 744 (863)
|++++ .|+++ +|---+|.+.++++++..+.... ....+ ....| +.++.+.+.++.+-+..+-
T Consensus 721 D~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG 800 (993)
T PLN02414 721 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMG 800 (993)
T ss_pred CEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHC
Confidence 99887 58664 23134788888988887765321 00000 01223 2245555566666666654
Q ss_pred ChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccce---EEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE-
Q 002941 745 DPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGT---LCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR- 820 (863)
Q Consensus 745 ~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl---~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~- 820 (863)
.+++ .++.+....+..++.++|.+ ..+. ......|. -+.+.+..-+ ... ...+..+.++|.+.|+...
T Consensus 801 ~~Gl-~~~a~~a~~nAnYl~~rL~~---~~~~-~~~~~~~~~~hEfv~~~~~l~--~~~-g~~~~di~krL~d~Gihapt 872 (993)
T PLN02414 801 SEGL-TDASKIAILNANYMAKRLEG---HYPV-LFRGKNGTCAHEFIIDLRPFK--NTA-GIEPEDVAKRLMDYGFHAPT 872 (993)
T ss_pred HhHH-HHHHHHHHHHHHHHHHHHHh---hCCc-cccCCCCCeeeeEEEeccccc--ccc-CCCHHHHHHHHHHcCcEEee
Confidence 4444 22233333333333333322 1221 11111222 1112222100 000 0124679999999998764
Q ss_pred ---ecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 002941 821 ---PLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVE 857 (863)
Q Consensus 821 ---p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~~~ 857 (863)
|..+.+++.|.-..+++|||+++++|.....++.++.
T Consensus 873 ~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~~~~ 912 (993)
T PLN02414 873 MSWPVPGTLMIEPTESESKAELDRFCDALISIREEIADIE 912 (993)
T ss_pred eccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4468999999999999999999999999988887643
No 299
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=98.93 E-value=8.8e-08 Score=109.30 Aligned_cols=236 Identities=14% Similarity=0.092 Sum_probs=135.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
+.++...+|.++|+++.+. +....++||++|+..++...+. .| .+||+....|.+.
T Consensus 58 ~~~p~~~~Le~~lA~~~g~---~~~i~~~sG~~Ai~~~l~all~---------~G------------d~Vl~~~~~y~~t 113 (388)
T PRK07811 58 TGNPTRTALEEQLAALEGG---AYGRAFSSGMAATDCLLRAVLR---------PG------------DHIVIPNDAYGGT 113 (388)
T ss_pred CCCccHHHHHHHHHHHhCC---CceEEeCCHHHHHHHHHHHHhC---------CC------------CEEEEcCCCchHH
Confidence 4567788999999999874 4556668999999998876521 12 5688888887653
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
....... .+ .++ +....++ ..|
T Consensus 114 ~~~~~~~-----~~---------~~g-------------i~~~~~d------------------------~~d------- 135 (388)
T PRK07811 114 FRLIDKV-----FT---------RWG-------------VEYTPVD------------------------LSD------- 135 (388)
T ss_pred HHHHHHh-----Cc---------CCC-------------eEEEEeC------------------------CCC-------
Confidence 2111110 00 000 0000000 001
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.+. .++.+|++|.. .+..|.... +++|.++|++||+++|+||++. .+..+.. .+
T Consensus 136 -~e~l~~~i~--------~~tklV~ie~p-~NPtg~~~d----l~~I~~la~~~gi~lIvD~a~a-~~~~~~p-----~~ 195 (388)
T PRK07811 136 -LDAVRAAIT--------PRTKLIWVETP-TNPLLSITD----IAALAELAHDAGAKVVVDNTFA-SPYLQQP-----LA 195 (388)
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCcceecC----HHHHHHHHHHcCCEEEEECCCC-ccccCCc-----hh
Confidence 133444442 24567888765 677776554 9999999999999999999984 3222222 22
Q ss_pred CCCcEEEe--ccccCC-CCCCceeeecc-HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHH
Q 002941 680 CVPDIACY--GKLLTG-GVIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (863)
Q Consensus 680 v~PDivt~--sKgLgg-G~~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~ 755 (863)
...|++++ +|.++| |-.-.|+++++ +++.+.+... ........+|..++.++..|+.+. ...++..++
T Consensus 196 ~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~------~~~~g~~~s~~~a~l~~~~L~tl~--~R~~~~~~n 267 (388)
T PRK07811 196 LGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFL------QNGAGAVPGPFDAYLTLRGLKTLA--VRMDRHSEN 267 (388)
T ss_pred hCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHH------HHhcCCCCCHHHHHHHHhccCcHH--HHHHHHHHH
Confidence 34688754 699986 21235667664 6666654321 111122345666666665555432 223344444
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEcc
Q 002941 756 RRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (863)
Q Consensus 756 ~~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~ 793 (863)
...+.+ .++++|.|..| .|.|.|+.+++..
T Consensus 268 a~~la~--------~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 315 (388)
T PRK07811 268 AEAVAE--------FLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAG 315 (388)
T ss_pred HHHHHH--------HHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCC
Confidence 444444 34455554322 3668899999963
No 300
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=98.93 E-value=4.6e-08 Score=111.30 Aligned_cols=237 Identities=14% Similarity=0.098 Sum_probs=142.3
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +.+++++||++|+..++...++ .| ..|++...+|.+
T Consensus 47 R~~~p~~~~le~~lA~l~g~---~~v~~~~gg~~Ai~~~l~all~---------~G------------D~Vl~~~p~y~~ 102 (382)
T TIGR02080 47 RSGNPTRDLLQQALAELEGG---AGAVVTNTGMSAIHLVTTALLG---------PD------------DLLVAPHDCYGG 102 (382)
T ss_pred CCCCchHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHHcC---------CC------------CEEEEcCCCcHH
Confidence 45677889999999998873 5799999999999988875521 12 568888888865
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.......+.... + ..+.+. ...|
T Consensus 103 ~~~~~~~~~~~~--------------~--------------~~v~~~-----------------------d~~d------ 125 (382)
T TIGR02080 103 TYRLLNALAKKG--------------C--------------FRVLFV-----------------------DQGD------ 125 (382)
T ss_pred HHHHHHHHHhhc--------------C--------------eEEEEE-----------------------CCCC------
Confidence 322111110000 0 000000 0011
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. .++.+|++|.. .+..|.+++ +++|.++|+++|+++|+||++..+ ..... +
T Consensus 126 --~~~l~~ai~--------~~tklV~l~~p-~NPtG~~~d----l~~I~~la~~~g~~vvvD~a~~~~-~~~~p-----l 184 (382)
T TIGR02080 126 --EQALRAALA--------QKPKLVLIETP-SNPLLRVVD----IAKICHLAKAVGAVVVVDNTFLSP-ALQNP-----L 184 (382)
T ss_pred --HHHHHHhcC--------cCceEEEEECC-CCCCCEecC----HHHHHHHHHHcCCEEEEECCCccc-ccCCc-----h
Confidence 133445443 23566777754 788887765 789999999999999999999522 11111 1
Q ss_pred CCCCcEE--EeccccCCC-CCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 679 GCVPDIA--CYGKLLTGG-VIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 679 gv~PDiv--t~sKgLggG-~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
....|++ +++|.++|. =+..|++++ ++++.+.+... ....+...+|+.+..++..|+.|... .++..+
T Consensus 185 ~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~------~~~~g~~~sp~~a~l~lr~l~tl~~R--~~~~~~ 256 (382)
T TIGR02080 185 ALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWW------ANNLGVTGGAFDSYLTLRGLRTLVAR--MRLQQR 256 (382)
T ss_pred hhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHH------HHccCCCCCHHHHHHHHcccchHHHH--HHHHHH
Confidence 1235877 568988742 145666665 57776665421 11223457888888877766655321 334445
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEcc
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~ 793 (863)
++..+.+ .++.||.|..| .|.|.|+.+++..
T Consensus 257 na~~~a~--------~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 305 (382)
T TIGR02080 257 NAQAIVE--------YLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKG 305 (382)
T ss_pred HHHHHHH--------HHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecC
Confidence 5544444 34455655433 3678899999963
No 301
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=98.92 E-value=5e-07 Score=101.21 Aligned_cols=328 Identities=17% Similarity=0.143 Sum_probs=191.2
Q ss_pred cHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccC
Q 002941 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~ 497 (863)
+|+|.+|+.++.- +|.. .-......++.++|...++...-+-+++..||+-|+|+|+.-... +|
T Consensus 17 ~~~V~~am~~~~~--~h~s--~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~---------pg--- 80 (383)
T COG0075 17 PPRVLLAMARPMV--GHRS--PDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVE---------PG--- 80 (383)
T ss_pred CHHHHHHhcCCCC--CCCC--HHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccC---------CC---
Confidence 5777777665432 1211 112355677778888887743114567889999999999976531 12
Q ss_pred CCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccc
Q 002941 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (863)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~ 577 (863)
.+|+...++.-|.-+.=+.-. |. . .++.+..+
T Consensus 81 ---------dkVLv~~nG~FG~R~~~ia~~----~g----------------~-------~v~~~~~~------------ 112 (383)
T COG0075 81 ---------DKVLVVVNGKFGERFAEIAER----YG----------------A-------EVVVLEVE------------ 112 (383)
T ss_pred ---------CeEEEEeCChHHHHHHHHHHH----hC----------------C-------ceEEEeCC------------
Confidence 578888887666533222110 00 0 01111111
Q ss_pred cccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeE
Q 002941 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (863)
Q Consensus 578 ~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilL 657 (863)
++..-+ .+.+++.|++ ...-+-++.+-+|. +.|++-| +++|.++|++||+++
T Consensus 113 ---------wg~~v~--------p~~v~~~L~~---~~~~~~V~~vH~ET----STGvlnp----l~~I~~~~k~~g~l~ 164 (383)
T COG0075 113 ---------WGEAVD--------PEEVEEALDK---DPDIKAVAVVHNET----STGVLNP----LKEIAKAAKEHGALL 164 (383)
T ss_pred ---------CCCCCC--------HHHHHHHHhc---CCCccEEEEEeccC----cccccCc----HHHHHHHHHHcCCEE
Confidence 000011 2456677763 11122455666666 4677777 999999999999999
Q ss_pred EEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCcc---------ceee---cc
Q 002941 658 IFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKL---------KALL---HG 723 (863)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~---------~~~~---~~ 723 (863)
|+|-|- .|| |..+-.+.||+ |+++-| |+|++- --+|.+..+++..+.+...... ...+ ..
T Consensus 165 iVDaVs-S~G--g~~~~vd~wgi--Dv~itgSQK~l~~P-PGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~ 238 (383)
T COG0075 165 IVDAVS-SLG--GEPLKVDEWGI--DVAITGSQKALGAP-PGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGS 238 (383)
T ss_pred EEEecc-cCC--CcccchhhcCc--cEEEecCchhccCC-CccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCC
Confidence 999776 454 45666777776 777664 999862 2256788899999888754211 0111 22
Q ss_pred cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-cccceEEEEEEccCCcCCCCch
Q 002941 724 HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VALGTLCAIELQAAGCNAGYGS 802 (863)
Q Consensus 724 ~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-rg~Gl~~~iel~~~~~~~~~~~ 802 (863)
+.|+.......+-.++|+.+.+++ .++.+++-+.+.+.+++.+.++ ..+...+. .-.-.+.++...... .
T Consensus 239 ~p~Tppv~~i~aL~~al~~i~~EG-le~r~~RH~~~~~a~r~~~~al--Gl~~~~~~~~~s~tvta~~~P~g~-----~- 309 (383)
T COG0075 239 TPYTPPVNLIYALREALDLILEEG-LEARIARHRRLAEALRAGLEAL--GLELFADPERRSPTVTAIKVPEGV-----D- 309 (383)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHc--CCccccCcccCCCceEEEECCCCC-----C-
Confidence 334445556667788999988776 5566666666666554443322 11111111 111123334333221 1
Q ss_pred HHHHHHHHHHHH-CCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 803 LYAASLLKKLRE-DGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 803 ~~~~~l~~~l~e-~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
...+...+++ .|+.+.+. |..+||---=..+..++..++.+|+.+|.++.
T Consensus 310 --~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g 365 (383)
T COG0075 310 --DKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALRELG 365 (383)
T ss_pred --cHHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcC
Confidence 1222334554 58877653 36778763334689999999999999998763
No 302
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=98.92 E-value=4e-08 Score=111.11 Aligned_cols=233 Identities=14% Similarity=0.162 Sum_probs=140.7
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+ .+.++.++||.+|+..++. +++ .| ..||+....|+|
T Consensus 50 R~~~p~~~~le~~lA~leg---~~~~v~~~sG~aAi~~~l~-~l~---------~G------------D~VI~~~~~yg~ 104 (364)
T PRK07269 50 RTKNPTRAKLEETLAAIES---ADYALATSSGMSAIVLAFS-VFP---------VG------------SKVVAVRDLYGG 104 (364)
T ss_pred CCCCccHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHH-HhC---------CC------------CEEEEecCCcCc
Confidence 3456778899999999986 3689999999999999884 321 23 468887777754
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.... +.... +. +-+.+. | ..|
T Consensus 105 ~~~~-~~~~~----------------------~~-----~~~~~~----------------~---------~~d------ 125 (364)
T PRK07269 105 SFRW-FNQQE----------------------KE-----GRFHFT----------------Y---------ANT------ 125 (364)
T ss_pred hHHH-HHHHH----------------------hc-----CcEEEE----------------e---------cCC------
Confidence 3211 00000 00 000000 0 011
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. .+..+|++|-. .+..|..+. +++|.++|+++|+++|+||++.. +. .....
T Consensus 126 --~~~l~~~i~--------~~TklV~lesP-~NPtg~~~d----i~~I~~la~~~gi~vvvD~t~~~----~~--~~~pl 184 (364)
T PRK07269 126 --EEELIAAIE--------EDTDIVYIETP-TNPLMVEFD----IEKVAKLAHAKGAKVIVDNTFYS----PI--YQRPI 184 (364)
T ss_pred --HHHHHHhcC--------cCceEEEEECC-CCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcc----cc--cCCch
Confidence 133445553 23456777764 677776664 99999999999999999999631 11 12234
Q ss_pred CCCCcEEEe--ccccCC-CCCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 679 GCVPDIACY--GKLLTG-GVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 679 gv~PDivt~--sKgLgg-G~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
+.-.|++++ .|.++| |=.=.|++++ ++++++.+... ........+|..++.++..|+.+.. ..++-.+
T Consensus 185 ~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~------~~~~G~~~s~~~a~l~~~~L~tL~~--r~~~~~~ 256 (364)
T PRK07269 185 ELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYN------LNTTGAVLSPFDSYLLMRGLKTLSL--RMERSTA 256 (364)
T ss_pred hhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHH------HHHhCCCCCHHHHHHHHcCCCcHHH--HHHHHHH
Confidence 456899876 588875 2111345565 56777665421 0111245688888888877775521 1233334
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEe--cccceEEEEEEc
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRV--VALGTLCAIELQ 792 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~v--rg~Gl~~~iel~ 792 (863)
++.++ .+.++++|.|..| .|.|.++++++.
T Consensus 257 na~~~--------a~~L~~~p~v~~v~ypg~gg~~sf~~~ 288 (364)
T PRK07269 257 NAQEV--------VAFLKKSPAVKEVLYTGKGGMISFKVA 288 (364)
T ss_pred HHHHH--------HHHHHhCCCccEEeCCCcCcEEEEEEC
Confidence 34333 3455678877655 588999999985
No 303
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=98.92 E-value=7.1e-07 Score=102.80 Aligned_cols=235 Identities=12% Similarity=0.036 Sum_probs=122.1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccc----------cccCC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF----------WRLGV 671 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGf----------GRtG~ 671 (863)
+.|++.+.+ .+..++++|+++-- .+..|-.+.+.+.+++++++|++||+.||.|+++... |..+.
T Consensus 139 e~Le~~I~~----~~~~~~~~I~v~~p-~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~ 213 (431)
T cd00617 139 AKLEKLIDE----VGAENIPYIVLTIT-NNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDK 213 (431)
T ss_pred HHHHHHhCc----ccCCCccEEEEECC-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCC
Confidence 456666642 22345777877632 4544335668899999999999999999999997421 12222
Q ss_pred cch---hhhcCCCCcEEEec--cccCCCCCCce-eeeccH-HHHHhhhcCCccceeecccCCCc-cHHHHHHHHHHHHHh
Q 002941 672 ETT---ADLLGCVPDIACYG--KLLTGGVIPLA-ATLATN-AVFDSFVGDSKLKALLHGHSYSA-HALGCAAAAKSIKWF 743 (863)
Q Consensus 672 ~~a---~e~~gv~PDivt~s--KgLggG~~Pig-av~~~~-~i~~~l~~~~~~~~~~~~~T~~~-~pla~AAalAaL~~l 743 (863)
..+ .+. +---|..+|| |..+ .|+| ++++++ ++++.+..... .+....||+| ++--++|...+|+..
T Consensus 214 si~ei~~e~-~s~sd~~~mS~~K~~~---~~~GG~i~~~d~~l~~~~~~~~~--~~~~~~~~gG~~~r~~~A~A~gL~e~ 287 (431)
T cd00617 214 SIAEIAREM-FSYADGCTMSAKKDGL---VNIGGFLALRDDELYEEARQRVV--LYEGFVTYGGMAGRDMEALAQGLREA 287 (431)
T ss_pred CHHHHHHHh-hccCCEEEEEeecCCC---CccceEEEeCcHHHHHHHHHhcc--ccCCccccccccHHHHHHHHHHHHhc
Confidence 111 111 1135666665 4333 3444 577775 58887763210 0111223444 233333332255532
Q ss_pred cChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEe-
Q 002941 744 KDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRP- 821 (863)
Q Consensus 744 ~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p- 821 (863)
.+.+..+...++.+++.+.| .+. ..|.+. ..-|.++.++...-....+...-.+..++.+|+ +.||.+.-
T Consensus 288 ~~~~~l~~~~~~r~~l~~~L----~~~--G~~v~~--P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~ 359 (431)
T cd00617 288 VEEDYLRHRVEQVRYLGDRL----DEA--GVPIVE--PAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVEL 359 (431)
T ss_pred ccHHHHHHHHHHHHHHHHHH----HHC--CCCccC--CCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEee
Confidence 22222222222223333322 211 233332 233455556655311000000012455665444 66777531
Q ss_pred ----------cC-------CEEEEecCC-CCcHHHHHHHHHHHHHHHHHHHH
Q 002941 822 ----------LG-------NVIYLMCGP-CSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 822 ----------~g-------~~lr~~ppl-~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
.+ +.+|+..|- ..|.+++|.+.++|.+..++-+.
T Consensus 360 g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~~~~ 411 (431)
T cd00617 360 GIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYERRED 411 (431)
T ss_pred cceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhhHhh
Confidence 11 578887776 46999999999999988876543
No 304
>PRK09275 aspartate aminotransferase; Provisional
Probab=98.91 E-value=3.2e-07 Score=107.74 Aligned_cols=225 Identities=12% Similarity=0.135 Sum_probs=124.8
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHH--cCCeEEEecccccccccCCcchhhhcCCCCc-EE---EeccccC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA---CYGKLLT 692 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~--~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD-iv---t~sKgLg 692 (863)
.-+.+|+.| ++..|.+. +++.+++|.++|++ +|+++|.|||+..|.. ..... ....|| ++ +|||.++
T Consensus 242 tkai~l~nP--~NPTG~v~-s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~~~s~--~~~~~~~~I~v~SfSK~f~ 314 (527)
T PRK09275 242 IKALFLVNP--SNPPSVAM-SDESLEKIADIVNEKRPDLMIITDDVYGTFVD--DFRSL--FAVLPYNTILVYSFSKYFG 314 (527)
T ss_pred CCEEEEeCC--cCCcCCCC-CHHHHHHHHHHHHhcCCCcEEEECCCChhhcc--cccCH--HHhCCCCEEEEeehhhhcc
Confidence 345566788 78898654 78899999999965 5999999999987731 11111 112343 33 6799886
Q ss_pred -CCCCCceeeeccHH-----HHHhhhcC--------------------------CccceeecccCCCccHHHHHH-HHHH
Q 002941 693 -GGVIPLAATLATNA-----VFDSFVGD--------------------------SKLKALLHGHSYSAHALGCAA-AAKS 739 (863)
Q Consensus 693 -gG~~Pigav~~~~~-----i~~~l~~~--------------------------~~~~~~~~~~T~~~~pla~AA-alAa 739 (863)
.| +.+|+++++++ +++.+... ...+.+...+|.+.+.....+ ++.+
T Consensus 315 mtG-~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~ 393 (527)
T PRK09275 315 ATG-WRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFS 393 (527)
T ss_pred CcH-hHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHH
Confidence 67 89999999876 33322000 000112223444544433333 3222
Q ss_pred H-HHhcC-hhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc-eEEEEEEccCCc---CCCCch-----HHHHHH
Q 002941 740 I-KWFKD-PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG-TLCAIELQAAGC---NAGYGS-----LYAASL 808 (863)
Q Consensus 740 L-~~l~~-~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G-l~~~iel~~~~~---~~~~~~-----~~~~~l 808 (863)
+ ..+++ +.+.+.+.+..++.++.+ .+.+ ..+. ......| .++.+++..-.. ...+.. ....++
T Consensus 394 ~~all~~~~~~~~~~~~~~~~Rr~~l----~~~L-g~~~-~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f 467 (527)
T PRK09275 394 LFALLDEEDAYKKAMKDIIRRRYKAL----YEGL-GLPE-PEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDL 467 (527)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHH----HHHc-CCCC-cCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHH
Confidence 1 22322 334444444433333322 2222 1121 1123445 444455542110 001100 013556
Q ss_pred HHHHH-HCCcEEEec---C---CEEEEecCCC-CcHHHHHHHHHHHHHHHHHHHHHHHh
Q 002941 809 LKKLR-EDGVYMRPL---G---NVIYLMCGPC-SSPEVCSQLLLKLYQRLEEFDKVEEK 859 (863)
Q Consensus 809 ~~~l~-e~GV~~~p~---g---~~lr~~ppl~-~t~eeid~~v~~L~~~l~~l~~~~~~ 859 (863)
+..|. +.||.+.|+ | +.+|++ ++ .+++++.++.++|.+.+++..+..++
T Consensus 468 ~~~Ll~e~gV~v~PG~~Fg~~~~~vRis--~a~~~~~~~~~~~~rl~~~l~~y~~~~~~ 524 (527)
T PRK09275 468 LFRLAEETGVVLLPGGGFGGPEWSVRVS--LANLNEEDYAKIGKAIRKLLDEYYEEYKK 524 (527)
T ss_pred HHHHHhcCCEEEeCchhhCCCCCeEEEE--EecCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666 569999874 2 468875 45 68899999999999999988876654
No 305
>PRK04311 selenocysteine synthase; Provisional
Probab=98.91 E-value=4.6e-07 Score=105.25 Aligned_cols=320 Identities=16% Similarity=0.156 Sum_probs=173.8
Q ss_pred cHHHHHHHHHHHHhccccc--C-CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccc
Q 002941 418 QIELARDMGYTAARFGHVM--F-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~~--~-~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tg 494 (863)
.+++.+|+.+.+..+.... . .+...+...+++++|+++++. +.++++|||+.|+..++... . .|
T Consensus 99 ~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Ga---e~a~vv~sgtaAl~l~l~~l-~---------~G 165 (464)
T PRK04311 99 SEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGA---EDALVVNNNAAAVLLALNAL-A---------AG 165 (464)
T ss_pred CHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHh-C---------CC
Confidence 5889999998887664211 0 011234456889999999883 57889999999998887432 1 22
Q ss_pred ccCCCccccccccEEEEecCC-Cc-cCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhh
Q 002941 495 FLGKDTTEKCIELKVLALKGS-YH-GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (863)
Q Consensus 495 r~~~~~~~~~~r~~II~~~~s-YH-G~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~ 572 (863)
..||+.++. || |.+...-..- .. .|+....++.
T Consensus 166 ------------deVIvs~~e~~~~ggs~~i~~~~--------------~~-------------~G~~l~~v~~------ 200 (464)
T PRK04311 166 ------------KEVIVSRGELVEIGGAFRIPDVM--------------RQ-------------AGARLVEVGT------ 200 (464)
T ss_pred ------------CEEEEcchhhhhcCcchhhHHHH--------------HH-------------CCcEEEEECC------
Confidence 467777663 32 3221100000 00 0100000100
Q ss_pred ccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC--CC--ceeCCHHHHHHHHH
Q 002941 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA--GG--MHMVDPLFQRILVK 648 (863)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~--gG--~~~pp~~fL~~Lre 648 (863)
.+. .. .+++++.+. ++.++|+++-. .+. .| ..++ +++|.+
T Consensus 201 -----------------~~~-t~-----~~dle~aI~--------~~TklV~~vh~-sN~~i~G~~~~~d----l~eI~~ 244 (464)
T PRK04311 201 -----------------TNR-TH-----LRDYEQAIN--------ENTALLLKVHT-SNYRIEGFTKEVS----LAELAA 244 (464)
T ss_pred -----------------CCC-CC-----HHHHHHhcC--------ccCeEEEEEcC-CCccccccCCcCC----HHHHHH
Confidence 000 00 234455552 23566766654 332 23 2333 999999
Q ss_pred HHHHcCCeEEEecccccccccC---------CcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCcc
Q 002941 649 ECQNRKIPVIFDEVFTGFWRLG---------VETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKL 717 (863)
Q Consensus 649 lc~~~gilLI~DEV~TGfGRtG---------~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~ 717 (863)
+|++||+++|+|... |-.| .....+......|++++| |.++|. . .|++++++++++.+....
T Consensus 245 lak~~gi~vivD~gs---G~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp-~-~G~i~g~~~li~~l~~~~-- 317 (464)
T PRK04311 245 LGKEHGLPVVYDLGS---GSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP-Q-AGIIVGKKELIARLKKHP-- 317 (464)
T ss_pred HHHHcCCeEEEECCC---cccccchhccCCCCCchhhHHhcCCcEEEecCcccccCC-c-eEEEEEcHHHHHHHhhch--
Confidence 999999999999843 2222 111122223457999997 999876 2 777889999988776421
Q ss_pred ceeecccCCCccHHHHHHHHHHHHHhcChh--hH------------HhHHHHHHHHHHHHHHHHHHHHhcCCCeeE--ec
Q 002941 718 KALLHGHSYSAHALGCAAAAKSIKWFKDPQ--TN------------HNIIPERRILRELWDLELIQQISSHRTVQR--VV 781 (863)
Q Consensus 718 ~~~~~~~T~~~~pla~AAalAaL~~l~~~~--l~------------~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~--vr 781 (863)
..-.+..+-+..++-.++|..+.+++ +. +++.+++.++.+.|........ ....+.. .-
T Consensus 318 ----~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~-~~~~~~~~~~~ 392 (464)
T PRK04311 318 ----LKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAF-AVEVVPSFSQV 392 (464)
T ss_pred ----hHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCe-eEEEEEccCcc
Confidence 11222233445555555665432211 11 4444555555543322100000 0000100 01
Q ss_pred ccceE-------EEEEEccCCcCCCCchHHHHHHHHHHHH--CCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 782 ALGTL-------CAIELQAAGCNAGYGSLYAASLLKKLRE--DGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 782 g~Gl~-------~~iel~~~~~~~~~~~~~~~~l~~~l~e--~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
|-|.+ +++.+.... ..+..+...|++ -.|+.+...+.+.+- +-++.++|++.++++|.+.+.
T Consensus 393 gggs~p~~~~~~~~v~~~~~~-------~~~~~l~~~lr~~~~~i~~r~~~~~~~ld-~r~~~~~~~~~~~~~~~~~~~ 463 (464)
T PRK04311 393 GGGSLPVDRLPSAAVTLTPKD-------RSLEALAARLRLLPPPVIGRIEDGRLLLD-LRTLEEEDEERLAAALLEALN 463 (464)
T ss_pred CCCCCcCCCCCeEEEEEeCCC-------CCHHHHHHHHhcCCCCEEEEEECCEEEEE-eCcCCHHHHHHHHHHHHHHhh
Confidence 22222 223332211 125677788886 568888877888876 557788999999999888753
No 306
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=98.91 E-value=6.7e-08 Score=110.05 Aligned_cols=237 Identities=11% Similarity=0.053 Sum_probs=136.9
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++....|+++|+++.+ .+.+++++||++|+..++...++ .| .+|++...+|.+
T Consensus 49 R~~npt~~~Le~~lA~leg---~e~ivvt~gg~~Ai~~~l~all~---------~G------------d~Il~~~~~y~~ 104 (388)
T PRK08861 49 RSGNPNRGLLEQTLSELES---GKGAVVTNCGTSALNLWVSALLG---------PD------------DLIVAPHDCYGG 104 (388)
T ss_pred CCCCchHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHHcC---------CC------------CEEEEcCCchHH
Confidence 3557778899999999987 37899999999999998865521 12 468877777754
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.. ..+.... . .. ++....++ ..|
T Consensus 105 ~~-~~~~~~~----~---------~~-------------gi~v~~vd------------------------~~d------ 127 (388)
T PRK08861 105 TY-RLFNTRA----N---------KG-------------DFKVQFVD------------------------QSD------ 127 (388)
T ss_pred HH-HHHHHHH----h---------cC-------------CeEEEEEC------------------------CCC------
Confidence 32 1110000 0 00 00000000 011
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. ++..+|++|-. .+..|.+++ +++|.++|+++|+++|+||++.. +..- .-.
T Consensus 128 --~e~l~~~i~--------~~tklV~lesP-~NPtG~v~d----l~~I~~la~~~gi~vIvDea~~~-~~~~-----~pl 186 (388)
T PRK08861 128 --AAALDAALA--------KKPKLILLETP-SNPLVRVVD----IAELCQKAKAVGALVAVDNTFLT-PVLQ-----KPL 186 (388)
T ss_pred --HHHHHHhcC--------cCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCccc-cccC-----CCc
Confidence 133444442 24567777754 788887776 78999999999999999999842 1111 112
Q ss_pred CCCCcEEEe--ccccCCC-CCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 679 GCVPDIACY--GKLLTGG-VIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 679 gv~PDivt~--sKgLggG-~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
..-.|+++. .|.++|. -.-.|++++ ++++++.+..- ........+|..+...+-.|+-|.- ..++-.+
T Consensus 187 ~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~------~~~~G~~~~p~~a~l~~rgl~Tl~l--R~~~~~~ 258 (388)
T PRK08861 187 ELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWW------GNCIGATGTPFDSYMTLRGIRTLGA--RMRVHEE 258 (388)
T ss_pred ccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHH------HhccCCCCChHHHHHHHhcCCCHHH--HHHHHHH
Confidence 234788865 6988762 123455666 45565544321 0111233567776655555543311 1234444
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEcc
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~ 793 (863)
++..+.+ .++.||.|..| .|.|.|+.+++..
T Consensus 259 ~a~~~a~--------~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~ 307 (388)
T PRK08861 259 SAQQILA--------YLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAG 307 (388)
T ss_pred HHHHHHH--------HHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCC
Confidence 4444444 34455655432 4678899999963
No 307
>PRK05968 hypothetical protein; Provisional
Probab=98.91 E-value=4.6e-08 Score=111.60 Aligned_cols=165 Identities=10% Similarity=0.076 Sum_probs=97.0
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCC-CCCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG-GVIP 697 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLgg-G~~P 697 (863)
.+|++|-. .+..+ +..-+++|.++|++||+++|+|+++..+ ...... .+| .|+++ ++|.++| |-.-
T Consensus 149 klV~ie~p-t~~~~----~~~dl~~i~~la~~~gi~vivD~a~a~~-~~~~p~---~~g--~Divv~S~tK~l~g~~~~~ 217 (389)
T PRK05968 149 KLLYLESP-TSWVF----ELQDVAALAALAKRHGVVTMIDNSWASP-VFQRPI---TLG--VDLVIHSASKYLGGHSDTV 217 (389)
T ss_pred CEEEEECC-CCCCC----cHHHHHHHHHHHHHcCCEEEEECCCcch-hccCch---hcC--CcEEEeeccccccCCCCeE
Confidence 45666754 44433 4456999999999999999999998432 222211 123 48775 5799986 3123
Q ss_pred ceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 002941 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (863)
Q Consensus 698 igav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v 777 (863)
.|++++++++++.+.... .. ..+ ...+|..++.++..|+.+. ...++-.++++++ .+.++++|.|
T Consensus 218 gG~i~~~~~~~~~l~~~~--~~-~~g--~~~~~~~A~~~l~~L~tl~--~r~~~~~~~a~~l--------a~~L~~~p~v 282 (389)
T PRK05968 218 AGVVAGSKEHIARINAEA--YP-YLG--AKLSPFEAWLLLRGLRTLP--LRMKAHEASALEI--------ARRLKAHPVV 282 (389)
T ss_pred EEEEEECHHHHHHHHHHH--HH-hCC--CCCChHHHHHHHcccCcHH--HHHHHHHHHHHHH--------HHHHHhCCCc
Confidence 466778888887665311 00 112 3456777777766666541 1122223333333 3445667766
Q ss_pred eEec-------------ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEE
Q 002941 778 QRVV-------------ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM 819 (863)
Q Consensus 778 ~~vr-------------g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~ 819 (863)
..|. |.|.|+.+++... ..+.+|...|...++-+
T Consensus 283 ~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~--------~~~~~f~~~L~~~~~~~ 329 (389)
T PRK05968 283 ERVCHPALANHPPAGLSGTSGLFSFIFREG--------IDVRAFADALKLFRLGV 329 (389)
T ss_pred cEEECCCCCCChHHhCCCCceEEEEEECCH--------HHHHHHHHhCCccEEec
Confidence 5554 5678999998632 13456777776555433
No 308
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=98.91 E-value=4.1e-07 Score=103.40 Aligned_cols=312 Identities=13% Similarity=0.070 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCC
Q 002941 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (863)
Q Consensus 419 p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~ 498 (863)
++-.+++.+.+...... ..+...+|.++++++++. +..++++||++|+..+++.. . . . .|
T Consensus 10 ~~~~~~v~~~~~~~~~~-----~g~~~~~le~~la~~~g~---~~~v~~~sgt~al~~~l~al-~-~--~----~G---- 69 (380)
T TIGR03588 10 QDDIDAVVEVLKSDFLT-----QGPTVPAFEEALAEYVGA---KYAVAFNSATSALHIACLAL-G-V--G----PG---- 69 (380)
T ss_pred HHHHHHHHHHHhcCCcc-----CChhHHHHHHHHHHHHCC---CeEEEEcCHHHHHHHHHHHc-C-C--C----CC----
Confidence 34467777777653221 245578899999999884 45677789999999988765 1 0 0 12
Q ss_pred CccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecC-cchhhhhhccccc
Q 002941 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKD 577 (863)
Q Consensus 499 ~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-P~~~~~~~~~~~~ 577 (863)
.+||+...+|++........+... ..++. |..+
T Consensus 70 --------d~Viv~~~~~~~~~~~~~~~G~~~-----------------------------~~~~~~~~~~--------- 103 (380)
T TIGR03588 70 --------DRVWTTPITFVATANCALYCGAKV-----------------------------DFVDIDPDTG--------- 103 (380)
T ss_pred --------CEEEeCCcchHHHHHHHHHcCCEE-----------------------------EEEecCCCcC---------
Confidence 568888887766532111110000 00110 0000
Q ss_pred cccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeE
Q 002941 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (863)
Q Consensus 578 ~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilL 657 (863)
..| .+.+++.+.+. ...++.+|+ |+ ...|...+ +++|.++|++||+++
T Consensus 104 ------------~~d--------~~~l~~~i~~~----~~~~t~~v~--~~--~~~G~~~~----~~~i~~l~~~~~~~l 151 (380)
T TIGR03588 104 ------------NID--------EDALEKKLAAA----KGKLPKAIV--PV--DFAGKSVD----MQAIAALAKKHGLKI 151 (380)
T ss_pred ------------CcC--------HHHHHHHhhcc----cCCCceEEE--Ee--CCCCccCC----HHHHHHHHHHcCCEE
Confidence 011 24455666421 112344554 22 22454443 899999999999999
Q ss_pred EEecccccccccCCcchhhhcCC--CCcEEEec----cccCCCCCCceeeec-cHHHHHhhhc---CCcc--c-------
Q 002941 658 IFDEVFTGFWRLGVETTADLLGC--VPDIACYG----KLLTGGVIPLAATLA-TNAVFDSFVG---DSKL--K------- 718 (863)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv--~PDivt~s----KgLggG~~Pigav~~-~~~i~~~l~~---~~~~--~------- 718 (863)
|.|++|+ +|-. +.-...|. .-|++++| |.++.| ..|+++. ++++.+.+.. .+.. .
T Consensus 152 I~D~a~a-~g~~---~~~~~~g~~~~~d~~~~S~~~~K~~~~~--~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 225 (380)
T TIGR03588 152 IEDASHA-LGAE---YGGKPVGNCRYADATVFSFHPVKIITTA--EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQD 225 (380)
T ss_pred EEECCCc-ccCc---cCCEeCCCccccceEEEecCCCCccccc--CceEEEECCHHHHHHHHHHHHCCCCCCcccccccc
Confidence 9999995 4421 11122333 45999876 878654 3455665 4666665431 1100 0
Q ss_pred -------eeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe---ccc---ce
Q 002941 719 -------ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV---VAL---GT 785 (863)
Q Consensus 719 -------~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v---rg~---Gl 785 (863)
....++.+..+.+.++.+++.|+.++ +..++-+++.+++.+ .+++.|.+... .+. -.
T Consensus 226 ~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l~--~~~~~r~~~~~~~~~--------~L~~~~~~~~~~~~~~~~~~~~ 295 (380)
T TIGR03588 226 EGPWYYEQQELGFNYRMTDIQAALGLSQLKKLD--RFVAKRREIAARYDR--------LLKDLPYFTPLTIPLGSKSAWH 295 (380)
T ss_pred cCcceeeeeccccccCccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--------HhcCCCCccCCCCCCCCEeEEE
Confidence 00112334456777777777776552 223333333444433 33344432211 111 12
Q ss_pred EEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------------C------------CEEEEecCCCCcHHHH
Q 002941 786 LCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------------G------------NVIYLMCGPCSSPEVC 839 (863)
Q Consensus 786 ~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------------g------------~~lr~~ppl~~t~eei 839 (863)
+..+.+.... . .....+.+.|.++||.++.. + ..+.+-.....|++|+
T Consensus 296 ~~~i~~~~~~-~-----~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv 369 (380)
T TIGR03588 296 LYPILLDQEF-G-----CTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQ 369 (380)
T ss_pred EEEEEECCcC-C-----CCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHH
Confidence 3334443210 0 12567888899999977520 0 2344433344699999
Q ss_pred HHHHHHHHHHH
Q 002941 840 SQLLLKLYQRL 850 (863)
Q Consensus 840 d~~v~~L~~~l 850 (863)
+.++++|+++|
T Consensus 370 ~~i~~~l~~~~ 380 (380)
T TIGR03588 370 QRVVETLRKVL 380 (380)
T ss_pred HHHHHHHHHhC
Confidence 99999998764
No 309
>PLN02368 alanine transaminase
Probab=98.91 E-value=1.4e-07 Score=108.17 Aligned_cols=158 Identities=15% Similarity=0.055 Sum_probs=100.9
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC--cch-hhhc-CC------CCcEE---E
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETT-ADLL-GC------VPDIA---C 686 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--~~a-~e~~-gv------~PDiv---t 686 (863)
-+.+++.| ++..|.+ .+.+.+++|.++|++||+++|.||++..|...|. +.. .+.. ++ .+.++ +
T Consensus 212 k~l~l~nP--~NPTG~v-~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~S 288 (407)
T PLN02368 212 RAMVIINP--GNPTGQC-LSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHT 288 (407)
T ss_pred EEEEEECC--CCCCCcc-CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEec
Confidence 34677889 7899955 4788999999999999999999999987743342 212 1111 11 12344 5
Q ss_pred eccccC--CCCCCceeee---ccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc--C---hhhHHhHHHHH
Q 002941 687 YGKLLT--GGVIPLAATL---ATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK--D---PQTNHNIIPER 756 (863)
Q Consensus 687 ~sKgLg--gG~~Pigav~---~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~--~---~~l~~~l~~~~ 756 (863)
|||++. .| +.+|+++ +++++++.+... ...+++.+.++..++.++|+--+ + +++.+.+.+..
T Consensus 289 fSK~~~~~~G-lRiGy~i~~~~~~~li~~~~~~-------~~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~ 360 (407)
T PLN02368 289 VSKGYWGECG-QRGGYFEMTNIPPKTVEEIYKV-------ASIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGIL 360 (407)
T ss_pred CCcccccCCc-cceEEEEEeCCCHHHHHHHHHH-------hcccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHH
Confidence 699984 67 8999998 488888887641 12345677788888888875211 0 11233322233
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEecccceEEEE
Q 002941 757 RILRELWDLELIQQISSHRTVQRVVALGTLCAI 789 (863)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~i 789 (863)
+.++++. +.+.+.+.+.|.+..+...|.|+.+
T Consensus 361 ~~~~~rr-~~~~~~L~~~~g~~~~~P~Gafy~~ 392 (407)
T PLN02368 361 ESLRRRA-RMMTDGFNSCKNVVCNFTEGAMYSF 392 (407)
T ss_pred HHHHHHH-HHHHHHHhCCCCeEeCCCCeeeEec
Confidence 3333322 1234555666777667778877764
No 310
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=98.89 E-value=4.2e-07 Score=102.78 Aligned_cols=307 Identities=15% Similarity=0.111 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCC
Q 002941 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (863)
Q Consensus 419 p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~ 498 (863)
.+..+++.+.++....+ ...+...+|+++++++++ ...++.++||+.|...|++.. . . ++
T Consensus 5 ~e~~~~v~~~l~s~~~~----~~g~~~~~fE~~~a~~~g---~~~~~~~~sgt~Al~~al~~l-~-~--------~~--- 64 (363)
T PF01041_consen 5 EEEIDAVLEVLRSGWLS----TYGPYVEEFEKEFAEYFG---VKYAVAVSSGTSALHLALRAL-G-L--------GP--- 64 (363)
T ss_dssp HHHHHHHHHHHHHTCCS----SSSHHHHHHHHHHHHHHT---SSEEEEESSHHHHHHHHHHHT-T-G--------GT---
T ss_pred HHHHHHHHHHHHhCCcc----CCCHHHHHHHHHHHHHhC---CCeEEEeCChhHHHHHHHHhc-C-C--------Cc---
Confidence 45566777777654222 226789999999999998 468999999999999999876 2 1 11
Q ss_pred CccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcccccc
Q 002941 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578 (863)
Q Consensus 499 ~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~ 578 (863)
..+||+-.-+|.+.....+.++..+.| .|. -|..+
T Consensus 65 -------gdeVi~p~~t~~~~~~ai~~~G~~pv~---------------~Di-------------~~~~~---------- 99 (363)
T PF01041_consen 65 -------GDEVIVPAYTFPATASAILWAGAEPVF---------------VDI-------------DPETL---------- 99 (363)
T ss_dssp -------TSEEEEESSS-THHHHHHHHTT-EEEE---------------E-B-------------ETTTS----------
T ss_pred -------CceEecCCCcchHHHHHHHHhccEEEE---------------Eec-------------cCCcC----------
Confidence 267999888887765544443321111 110 00000
Q ss_pred ccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEE
Q 002941 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658 (863)
Q Consensus 579 ~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI 658 (863)
. -| .+.+++.+.. +..|||+=-+ .| ... -+++|.++|++||+.||
T Consensus 100 ---------~--id--------~~~~~~~i~~--------~t~ai~~~h~-~G---~~~----d~~~i~~~~~~~~i~lI 144 (363)
T PF01041_consen 100 ---------N--ID--------PEALEKAITP--------KTKAILVVHL-FG---NPA----DMDAIRAIARKHGIPLI 144 (363)
T ss_dssp ---------S--B---------HHHHHHHHHT--------TEEEEEEE-G-GG---B-------HHHHHHHHHHTT-EEE
T ss_pred ---------C--cC--------HHHHHHHhcc--------CccEEEEecC-CC---Ccc----cHHHHHHHHHHcCCcEE
Confidence 0 11 2456677752 3455555443 33 333 28999999999999999
Q ss_pred EecccccccccCCcchhhhcCCCCcEEEec----cccCCCCCCceeeecc-HHHHHhhh---cCCcc----ceee----c
Q 002941 659 FDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFV---GDSKL----KALL----H 722 (863)
Q Consensus 659 ~DEV~TGfGRtG~~~a~e~~gv~PDivt~s----KgLggG~~Pigav~~~-~~i~~~l~---~~~~~----~~~~----~ 722 (863)
-|=+|+ +| ..+.-...|-.-|+.+|| |.++.|- .|+++++ +++.+.+. ..+.. ..+. .
T Consensus 145 eD~a~a-~g---~~~~g~~~G~~gd~~~fSf~~~K~i~~ge--GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 218 (363)
T PF01041_consen 145 EDAAQA-FG---ARYKGRPVGSFGDIAIFSFHPTKIITTGE--GGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPP 218 (363)
T ss_dssp EE-TTT-TT----EETTEETTSSSSEEEEESSTTSSS-SSS---EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS
T ss_pred Eccccc-cC---ceeCCEeccCCCCceEecCCCCCCCcCCC--CeeEEecHHHHHHHhhhhhccCcCccccccccccccC
Confidence 999995 53 222223345556999886 8886431 3567765 55555443 22210 0111 3
Q ss_pred ccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec-------ccceEEEEEEccCC
Q 002941 723 GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV-------ALGTLCAIELQAAG 795 (863)
Q Consensus 723 ~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr-------g~Gl~~~iel~~~~ 795 (863)
++.|..+++.+|.+++-|+.+++. .+.-+++.+.+ .+.+.+.+.+.... .....+.+.+.+..
T Consensus 219 g~n~rm~~~~AAigl~QL~~L~~~--~~~R~~~a~~y--------~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~ 288 (363)
T PF01041_consen 219 GYNFRMSELQAAIGLAQLKRLDEI--IARRRENAQRY--------REALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEA 288 (363)
T ss_dssp --B-B-BHHHHHHHHHHHHTHHHH--HHHHHHHHHHH--------HHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCG
T ss_pred CcccccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHH--------HHHHhcCCCcccccccccccccccccccccccccc
Confidence 556778899999999988876431 22222222222 34455666543321 11223344444321
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEecC-----------------------------CEEEEecCCCCcHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRPLG-----------------------------NVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p~g-----------------------------~~lr~~ppl~~t~eeid~~v~~L 846 (863)
. .....+.+.|.++||-+++.- ..+.+-.....++++++.++++|
T Consensus 289 ----~--~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~i 362 (363)
T PF01041_consen 289 ----L--ADRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAI 362 (363)
T ss_dssp ----C--STHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHH
T ss_pred ----c--chHHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhcc
Confidence 0 125678999999999886310 24455445567999999999887
Q ss_pred H
Q 002941 847 Y 847 (863)
Q Consensus 847 ~ 847 (863)
+
T Consensus 363 r 363 (363)
T PF01041_consen 363 R 363 (363)
T ss_dssp H
T ss_pred C
Confidence 4
No 311
>PRK07050 cystathionine beta-lyase; Provisional
Probab=98.89 E-value=1.4e-07 Score=107.93 Aligned_cols=172 Identities=13% Similarity=0.070 Sum_probs=105.8
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +.+++++||++|+..++...++ +| ..||+....|.+
T Consensus 61 r~~~pt~~~Le~~lA~l~g~---~~~l~~~sgt~Ai~~~l~al~~---------~G------------D~Vl~~~~~y~~ 116 (394)
T PRK07050 61 LHATPTSLALAQRLAEIEGG---RHALLQPSGLAAISLVYFGLVK---------AG------------DDVLIPDNAYGP 116 (394)
T ss_pred CCCCHHHHHHHHHHHHHhCC---CeEEEeccHHHHHHHHHHHHhC---------CC------------CEEEEecCCccc
Confidence 45677789999999999873 6899999999999999976531 22 568888888765
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.....-... .. . |+....++ . .+
T Consensus 117 ~~~~~~~~~--~~------------~-------------Gi~v~~vd-----------------------~-~~------ 139 (394)
T PRK07050 117 NRDHGEWLA--RD------------F-------------GITVRFYD-----------------------P-LI------ 139 (394)
T ss_pred HHHHHHHHH--Hh------------c-------------CeEEEEEC-----------------------C-CC------
Confidence 431100000 00 0 00000000 0 01
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. .+..+|++|.. .+..| +...+++|.++|++||+++|+||++. .| ..+.--..
T Consensus 140 --~~~l~~~i~--------~~tklV~le~p-~Np~~----~~~di~~I~~ia~~~gi~livD~a~a-~~---~~~~~l~~ 200 (394)
T PRK07050 140 --GAGIADLIQ--------PNTRLIWLEAP-GSVTM----EVPDVPAITAAARARGVVTAIDNTYS-AG---LAFKPFEH 200 (394)
T ss_pred --HHHHHHhcC--------CCCeEEEEECC-CCCCc----cHhhHHHHHHHHHHcCCEEEEECCcc-cc---cccCHHHc
Confidence 023444442 23457777764 55544 45569999999999999999999984 32 11111112
Q ss_pred CCCCcEEE--eccccCCCC-CCceeeec-cHHHHHhhh
Q 002941 679 GCVPDIAC--YGKLLTGGV-IPLAATLA-TNAVFDSFV 712 (863)
Q Consensus 679 gv~PDivt--~sKgLggG~-~Pigav~~-~~~i~~~l~ 712 (863)
| .|+++ ++|.++||- .+.|++++ ++++++.+.
T Consensus 201 G--aDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~ 236 (394)
T PRK07050 201 G--VDISVQALTKYQSGGSDVLMGATITADAELHAKLK 236 (394)
T ss_pred C--CeEEEEECCceecCCCCeeEEEEEECCHHHHHHHH
Confidence 3 48774 689997541 46787776 677777664
No 312
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=98.87 E-value=1.7e-06 Score=100.53 Aligned_cols=201 Identities=17% Similarity=0.105 Sum_probs=113.7
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEE--ecccccccccCCcchhhhcCCCCcEEEe-----cccc
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIF--DEVFTGFWRLGVETTADLLGCVPDIACY-----GKLL 691 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~--DEV~TGfGRtG~~~a~e~~gv~PDivt~-----sKgL 691 (863)
++++|++... +..|.+.+ +++|.++|+++|+++|+ |.+. +|.... .. ....|++++ ||.+
T Consensus 204 ~t~~v~l~~p--n~tG~v~~----l~~I~~~a~~~~~~~iv~~d~~~--~g~~~~---~~--~~~~D~~~~s~~k~~~~~ 270 (447)
T PRK00451 204 DTAAVVVQYP--NFFGVIED----LEEIAEIAHAGGALFIVGVDPVS--LGLLKP---PG--EYGADIVVGEGQPLGIPL 270 (447)
T ss_pred CeEEEEEECC--CCCCeeCC----HHHHHHHHHHCCCEEEEEcChHH--hccCCC---cc--cCCCCEEEECCCcCCCCC
Confidence 4666666653 45687755 99999999999999998 6553 222211 11 135688865 4443
Q ss_pred C-CCCCCceeeeccHHHHHhhhcC---------Cc------------cceeecccCC-Ccc-HHHHHHHHHHHHHhcChh
Q 002941 692 T-GGVIPLAATLATNAVFDSFVGD---------SK------------LKALLHGHSY-SAH-ALGCAAAAKSIKWFKDPQ 747 (863)
Q Consensus 692 g-gG~~Pigav~~~~~i~~~l~~~---------~~------------~~~~~~~~T~-~~~-pla~AAalAaL~~l~~~~ 747 (863)
. || ..+|.+.+++++.+.+... .+ ...+.++... +.+ ++...++.++|+.+.+++
T Consensus 271 ~~~G-pg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g 349 (447)
T PRK00451 271 SFGG-PYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEG 349 (447)
T ss_pred CCCC-CCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHHH
Confidence 2 34 4577888899888874210 00 0001111111 122 122233333455553333
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEE---EEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE----
Q 002941 748 TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLC---AIELQAAGCNAGYGSLYAASLLKKLREDGVYMR---- 820 (863)
Q Consensus 748 l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~---~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~---- 820 (863)
.+++.++...+++++.+. +.+.+.+.-. .|.++ .+.+. . ...++.++|.++|++..
T Consensus 350 -~~~~~~~~~~~~~~l~~~----L~~~~g~~~~--~~~~~~~~~v~~~-~---------~~~~~~~~L~~~gi~~~~~~~ 412 (447)
T PRK00451 350 -LRELAEQNHQKAHYLAER----LAEIGGVELF--DGPFFNEFVVRLP-K---------PAEEVNEALLEKGILGGYDLG 412 (447)
T ss_pred -HHHHHHHHHHHHHHHHHH----HhhcCCEEec--CCCeEEEEEEecC-C---------CHHHHHHHHHhcCCCCCcccc
Confidence 345555555566555433 3444443222 22222 23331 1 14678999999988742
Q ss_pred ec----CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 821 PL----GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 821 p~----g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
+. .+.+|++++..+|+++++++++.|++.+
T Consensus 413 ~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 413 RYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred cccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 22 2688999888899999999999998654
No 313
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=98.87 E-value=1.7e-06 Score=94.34 Aligned_cols=336 Identities=14% Similarity=0.096 Sum_probs=185.1
Q ss_pred CcHHHHHHHHHHHHhccccc--CCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccc
Q 002941 417 LQIELARDMGYTAARFGHVM--FPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLV 493 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~--~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~t 493 (863)
..++..+|+.+++....+.. ...+.-....+.||.|..-++.. ..+.|+.+.+=++|+|.|+....+ +
T Consensus 79 ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~---------p 149 (447)
T KOG0259|consen 79 TSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLAN---------P 149 (447)
T ss_pred CCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcC---------C
Confidence 35778889998887543211 11223345667888877766543 236799999999999999987621 1
Q ss_pred cccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhc
Q 002941 494 DFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (863)
Q Consensus 494 gr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~ 573 (863)
| ..|+.-+-+|-=. .+.+. |.+.. ..+ ++. .|.
T Consensus 150 ~------------aNILlPrPGfp~Y--~~~a~-----~~~lE-VR~-------ydl-------------LPe------- 182 (447)
T KOG0259|consen 150 G------------ANILLPRPGFPLY--DTRAI-----YSGLE-VRY-------YDL-------------LPE------- 182 (447)
T ss_pred C------------CceecCCCCCchH--HHhhh-----hcCce-eEe-------ecc-------------cCc-------
Confidence 2 3466665554211 11111 11100 000 000 111
Q ss_pred cccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc
Q 002941 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (863)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~ 653 (863)
..|+ -| ++.+|...+ ..++|.||+.| .+..|- +.+.+-|++|.++|+|+
T Consensus 183 -----------~~we--ID--------L~~veal~D-------ENT~AivviNP--~NPcGn-Vys~~HL~kiae~A~kl 231 (447)
T KOG0259|consen 183 -----------KDWE--ID--------LDGVEALAD-------ENTVAIVVINP--NNPCGN-VYSEDHLKKIAETAKKL 231 (447)
T ss_pred -----------ccce--ec--------hHHHHHhhc-------cCeeEEEEeCC--CCCCcc-cccHHHHHHHHHHHHHh
Confidence 0010 01 345655554 36889999999 577774 55889999999999999
Q ss_pred CCeEEEecccccccccCC-cchhhhcC-CCCcEEEe---cccc-CCCCCCceeeeccHHHHHhhhcCCcccee--ecccC
Q 002941 654 KIPVIFDEVFTGFWRLGV-ETTADLLG-CVPDIACY---GKLL-TGGVIPLAATLATNAVFDSFVGDSKLKAL--LHGHS 725 (863)
Q Consensus 654 gilLI~DEV~TGfGRtG~-~~a~e~~g-v~PDivt~---sKgL-ggG~~Pigav~~~~~i~~~l~~~~~~~~~--~~~~T 725 (863)
|+++|.|||+.-+-.-++ +-....|. +.| ++|+ ||+. -=| |.+|.++..+.- ..|.......++ +..-+
T Consensus 232 gi~vIaDEVY~~~vfg~~pfvpmg~fssiVP-VitlggisKrW~VPG-WRlGWi~~hD~~-gvf~~~~~~q~~~~~~~~~ 308 (447)
T KOG0259|consen 232 GIMVIADEVYGHTVFGDKPFVPMGKFSSIVP-VITLGGISKRWIVPG-WRLGWIALHDPR-GVFRDTKVVQGIKNFLDII 308 (447)
T ss_pred CCeEEehhhcceeecCCCCccchhhccccCc-eEeecccccccccCC-ceeeeEEEeccc-ccccchHHHHHHHHHHhcc
Confidence 999999999865522233 22333333 344 4554 6755 346 899998764321 111111000000 01112
Q ss_pred CCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee-EecccceEEE---EEEccCCcCCCCc
Q 002941 726 YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ-RVVALGTLCA---IELQAAGCNAGYG 801 (863)
Q Consensus 726 ~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~-~vrg~Gl~~~---iel~~~~~~~~~~ 801 (863)
-+.+.+-.+|.-.-|+.- .+++.+.-....+.-.+ ..-+.+++.|++. .++..|.|+- +++..-. .+.
T Consensus 309 ~~p~TiiQ~AlP~IL~kT-p~efF~k~~~~lk~na~----l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s~~~---~~~ 380 (447)
T KOG0259|consen 309 PGPATIIQGALPDILEKT-PEEFFDKKLSFLKSNAD----LCYSRLKDIPCLTCPVKPEGCMYLMVKLNLSLFP---DIE 380 (447)
T ss_pred CCccHhHHHHhHHHHHhC-hHHHHHHHHHHHHhhHH----HHHHHHhcCCCcccCcCCCcceEEEeccchhhhc---ccc
Confidence 223333333333333321 23344433332222222 1234567788777 6788886554 3322100 000
Q ss_pred hHHHHHHHHHH-HHCCcEEEec---C--CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 802 SLYAASLLKKL-REDGVYMRPL---G--NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 802 ~~~~~~l~~~l-~e~GV~~~p~---g--~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.-..|++.| +|+-|++-|+ | |.+|++ +++..+.+++++++|++..++-.
T Consensus 381 --dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~--i~~~~~~leea~~Rik~Fc~RH~ 435 (447)
T KOG0259|consen 381 --DDVDFCQKLAREESVICLPGQAFGLKNWLRIV--ITVEEEMLEEAFSRIKEFCDRHS 435 (447)
T ss_pred --ccHHHHHHHhhhcceEEeccccccCCCeEEEE--EccChHHHHHHHHHHHHHHHhhh
Confidence 123456555 5789999885 2 888885 57788999999999999987654
No 314
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=98.87 E-value=5.7e-07 Score=104.20 Aligned_cols=312 Identities=16% Similarity=0.165 Sum_probs=169.1
Q ss_pred cHHHHHHHHHHHHhccccc--C-CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccc
Q 002941 418 QIELARDMGYTAARFGHVM--F-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~~--~-~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tg 494 (863)
++++.+|+.+.+..+.... + .+........++++|+++++. +.++++|||+.|+..++... . .|
T Consensus 94 ~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~ga---e~alvv~sg~aAi~l~l~~l-~---------~G 160 (454)
T TIGR00474 94 AEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGA---EDALVVNNNAAAVLLALNTL-A---------KG 160 (454)
T ss_pred CHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHh-C---------Cc
Confidence 6899999999988764211 1 112235567899999999884 46778899999998887432 1 12
Q ss_pred ccCCCccccccccEEEEecCCC--ccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhh
Q 002941 495 FLGKDTTEKCIELKVLALKGSY--HGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (863)
Q Consensus 495 r~~~~~~~~~~r~~II~~~~sY--HG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~ 572 (863)
..||+.++.+ +|.+..-.... .. .|+....++.
T Consensus 161 ------------deVIvs~~e~v~~ggs~~i~~~~--------------~~-------------~G~~~~~v~~------ 195 (454)
T TIGR00474 161 ------------KEVIVSRGELVEIGGSFRIPDVM--------------EQ-------------SGAKLVEVGT------ 195 (454)
T ss_pred ------------CEEEECCChhhhhcchhhHHHHH--------------HH-------------cCCEEEEeCC------
Confidence 4677777664 22211100000 00 0000001100
Q ss_pred ccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC--CCc--eeCCHHHHHHHHH
Q 002941 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA--GGM--HMVDPLFQRILVK 648 (863)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~--gG~--~~pp~~fL~~Lre 648 (863)
.+. .. .+++++.+. .+.++|+++-. .+. .|. .++ +++|.+
T Consensus 196 -----------------~~~-~~-----l~dle~aI~--------~~T~lv~~~h~-sN~~~~G~~~~~d----l~~I~~ 239 (454)
T TIGR00474 196 -----------------TNR-TH-----LKDYEDAIT--------ENTALLLKVHT-SNYRIVGFTEEVS----IAELVA 239 (454)
T ss_pred -----------------CCC-CC-----HHHHHHhcC--------cCCEEEEEEcc-CcccccCCCCCCC----HHHHHH
Confidence 000 00 233444442 24566666654 332 343 444 999999
Q ss_pred HHHHcCCeEEEecccccccccCCc---------chhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCcc
Q 002941 649 ECQNRKIPVIFDEVFTGFWRLGVE---------TTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKL 717 (863)
Q Consensus 649 lc~~~gilLI~DEV~TGfGRtG~~---------~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~ 717 (863)
+|++||+++|+|- |+|-.+.. ...+......|++++| |.|+|. . .|++++++++++.+....
T Consensus 240 la~~~g~~vivD~---~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp-~-~G~i~g~~~~i~~l~~~~-- 312 (454)
T TIGR00474 240 LGREHGLPVMEDL---GSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP-Q-AGIIVGKKELIERLKKNP-- 312 (454)
T ss_pred HHHHcCCeEEEEC---CCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCC-e-EEEEEECHHHHHhhhhch--
Confidence 9999999999995 34433321 1112223357999999 999875 2 677889998888765422
Q ss_pred ceeecccCCCccHHHHHHHHHHHHHhcChh--h------------HHhHHHHHHHHHHHHHHHHHHHHh-cCC-CeeEe-
Q 002941 718 KALLHGHSYSAHALGCAAAAKSIKWFKDPQ--T------------NHNIIPERRILRELWDLELIQQIS-SHR-TVQRV- 780 (863)
Q Consensus 718 ~~~~~~~T~~~~pla~AAalAaL~~l~~~~--l------------~~~l~~~~~~l~~~l~~~l~~~~~-~~p-~v~~v- 780 (863)
..-.+..+-+..|+..+++..+-+++ + .++..+++.++.+.|.. .+. ... .|...
T Consensus 313 ----l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~----~~~~~~~~~~~~~~ 384 (454)
T TIGR00474 313 ----LTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKA----ALGPGFELEIVPGL 384 (454)
T ss_pred ----hHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHh----hccCCceEEEEEcC
Confidence 11112233445555566665543321 1 12445555555554322 111 000 01111
Q ss_pred --cccceE-------EEEEEccCCcCCCCchHHHHHHHHHHHHCC--cEEEecCCEEEEecCCCCcHHHHHHHHHHH
Q 002941 781 --VALGTL-------CAIELQAAGCNAGYGSLYAASLLKKLREDG--VYMRPLGNVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 781 --rg~Gl~-------~~iel~~~~~~~~~~~~~~~~l~~~l~e~G--V~~~p~g~~lr~~ppl~~t~eeid~~v~~L 846 (863)
-|-|.| +++.+.... ..+..+.+.|++.- |+.+...+.+.+- +-++.++|++.++++|
T Consensus 385 ~~~ggg~~p~~~l~~~~v~~~~~~-------~~~~~l~~~lr~~~~~ii~r~~~~~~~ld-~r~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 385 SQVGGGSLPDERLPSYAVTLTPDG-------LSAEKLEARLRELPPPIIGRIEDDRFLLD-LRTLLEDEEELLIEAL 453 (454)
T ss_pred CcccCCCCcCCCCCeEEEEEecCC-------CCHHHHHHHHhcCCCCEEEEEECCEEEEE-eCcCCHHHHHHHHHHh
Confidence 122322 223332211 12567777887654 8888777888776 5577888888888765
No 315
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=98.85 E-value=4.9e-08 Score=96.24 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=60.7
Q ss_pred CCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCC
Q 002941 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGG 694 (863)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG 694 (863)
..+++++++++. ++..|...+ +++|.++|+++|+++|+||++.++...... .......+|+++.| |.+++
T Consensus 90 ~~~~~~v~~~~~-~~~~g~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~~~~~--~~~~~~~~d~~~~s~~K~~~~- 161 (170)
T cd01494 90 KPNVALIVITPN-TTSGGVLVP----LKEIRKIAKEYGILLLVDAASAGGASPAPG--VLIPEGGADVVTFSLHKNLGG- 161 (170)
T ss_pred cCceEEEEEecC-cCCCCeEcC----HHHHHHHHHHcCCEEEEecccccccccccc--cccccccCCEEEEEcccccCC-
Confidence 467899999997 888887776 499999999999999999999877554322 12223458999888 99987
Q ss_pred CCCceeeecc
Q 002941 695 VIPLAATLAT 704 (863)
Q Consensus 695 ~~Pigav~~~ 704 (863)
.+.|+++++
T Consensus 162 -~~~G~l~~~ 170 (170)
T cd01494 162 -EGGGVVIVK 170 (170)
T ss_pred -CceEEEEeC
Confidence 567777653
No 316
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=98.84 E-value=2.7e-07 Score=104.98 Aligned_cols=201 Identities=13% Similarity=0.114 Sum_probs=123.1
Q ss_pred cCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHH
Q 002941 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVF 708 (863)
Q Consensus 631 g~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~ 708 (863)
...|.+.| +++|.+ ++||+++|+|=+|+ +|-. .+-.+. .|++++| |+|+|- .-+|.+.++++..
T Consensus 147 t~tG~~~p----i~~I~~--~~~g~~~vVDa~qs-~G~~--pidv~~----iD~~~~s~~K~l~~P-~G~g~l~v~~~~~ 212 (378)
T PRK03080 147 TTTGVRVP----VARWIG--ADREGLTICDATSA-AFAL--PLDWSK----LDVYTFSWQKVLGGE-GGHGMAILSPRAV 212 (378)
T ss_pred Cccceecc----chhhcc--ccCCCeEEEecccc-cccC--CCCHHH----CcEEEEehhhhCCCC-CceEEEEECHHHH
Confidence 34678887 677766 78999999999984 5422 222222 4988775 998763 2378889999998
Q ss_pred HhhhcCCc-cc--------e-------eecccCCC-ccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHH
Q 002941 709 DSFVGDSK-LK--------A-------LLHGHSYS-AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQI 771 (863)
Q Consensus 709 ~~l~~~~~-~~--------~-------~~~~~T~~-~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~ 771 (863)
+.+..... +. . .+...|+. .+-.+..+..++|+.+.+.+-.++++++.+.+.+.+.+.+
T Consensus 213 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l---- 288 (378)
T PRK03080 213 ERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWA---- 288 (378)
T ss_pred HhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH----
Confidence 87653110 00 0 01122322 3344555668899988654224566666666666554433
Q ss_pred hcCCCeeE----ec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHHH
Q 002941 772 SSHRTVQR----VV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQ 841 (863)
Q Consensus 772 ~~~p~v~~----vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid~ 841 (863)
++.+.+.- -. ..+.++.+.+.+.. ......+...+.++|++++.. ++.+|+++...++++||+.
T Consensus 289 ~~~~~~~~~~~~~~~~s~~i~~~~~~~~~------~~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~ 362 (378)
T PRK03080 289 EKTPWATPLVADPATRSNTSVTLDFVDAQ------AAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPADVEA 362 (378)
T ss_pred HhCCCcccccCCccccCccEEEEEcCCch------HHHHHHHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHHHHHH
Confidence 33332111 11 12346666654310 002234666677888888642 3689999888899999999
Q ss_pred HHHHHHHHHHHHHH
Q 002941 842 LLLKLYQRLEEFDK 855 (863)
Q Consensus 842 ~v~~L~~~l~~l~~ 855 (863)
++++|++++++++.
T Consensus 363 l~~al~~~~~~~~~ 376 (378)
T PRK03080 363 LTPWLDWAFERLKA 376 (378)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998776653
No 317
>PLN02509 cystathionine beta-lyase
Probab=98.84 E-value=2.7e-07 Score=107.18 Aligned_cols=147 Identities=14% Similarity=0.058 Sum_probs=90.4
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVI 696 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~ 696 (863)
+..+|++|-. .+..|.+.+ +++|.++|++||+++|+||++ +.+-.+.. .+...|++++ +|.++|.--
T Consensus 217 ~TklV~lesP-sNPtG~i~D----l~~I~~lAk~~g~~lIVD~A~-a~~~~~~p-----l~~gaDivv~S~tK~l~G~gd 285 (464)
T PLN02509 217 QTKLVWLESP-TNPRQQISD----IRKIAEMAHAQGALVLVDNSI-MSPVLSRP-----LELGADIVMHSATKFIAGHSD 285 (464)
T ss_pred CCeEEEEECC-CCCCCCHHH----HHHHHHHHHHcCCEEEEECCc-cccccCCh-----hhcCCcEEEecCcccccCCCc
Confidence 4567888876 788886543 999999999999999999998 34333332 2335798855 799976212
Q ss_pred Cc-eeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 697 PL-AATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 697 Pi-gav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
.+ |++++ .+.+.+.+..- ........+|..|+.++..|+.+.. .+++..+++.++.+ .+++|
T Consensus 286 v~gG~v~~~~~~l~~~~~~~------~~~~g~~l~p~~A~l~lr~L~tL~~--R~~r~~~nA~~la~--------~L~~~ 349 (464)
T PLN02509 286 VMAGVLAVKGEKLAKEVYFL------QNSEGSGLAPFDCWLCLRGIKTMAL--RIEKQQENARKIAM--------YLSSH 349 (464)
T ss_pred cceeEEEeccHHHHHHHHHH------HHhcCCCcCHHHHHHHHhhhhhHHH--HHHHHHHHHHHHHH--------HHhcC
Confidence 33 44444 34444433210 0111122478888888888887632 23444555555544 34556
Q ss_pred CCeeEe------------------cccceEEEEEEc
Q 002941 775 RTVQRV------------------VALGTLCAIELQ 792 (863)
Q Consensus 775 p~v~~v------------------rg~Gl~~~iel~ 792 (863)
|.|..| .|.|.|+.+++.
T Consensus 350 p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~ 385 (464)
T PLN02509 350 PRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG 385 (464)
T ss_pred CCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeC
Confidence 655433 366889999883
No 318
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=98.82 E-value=1.7e-06 Score=106.67 Aligned_cols=313 Identities=12% Similarity=0.060 Sum_probs=184.0
Q ss_pred hHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccc
Q 002941 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522 (863)
Q Consensus 443 ~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~g 522 (863)
+...+|.+.|++++|-+ +-.++-++|+.|.-++|.++ |.|+..+|+. + +.++....+-||+...
T Consensus 530 q~i~elq~~l~eltGmd--~~Sl~p~aGA~gE~agL~ai-R~y~~~rge~-~------------R~~vlip~saHgtnPa 593 (939)
T TIGR00461 530 ELIAQLEKWLCSITGFD--AISLQPNSGAQGEYAGLRVI-RSYHESRGEN-H------------RNICLIPVSAHGTNPA 593 (939)
T ss_pred HHHHHHHHHHHHHHCCC--CcccCCchHHHHHHHHHHHH-HHHHHhcCCC-C------------CCEEEEEccccCcCHH
Confidence 45678999999999832 24567788888887788877 7888777752 2 3567778888998655
Q ss_pred cceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHH
Q 002941 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602 (863)
Q Consensus 523 als~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 602 (863)
+....|-. +..++..... .-| .+
T Consensus 594 sa~~~G~~----------------------------Vv~V~~d~~G---------------------~iD--------le 616 (939)
T TIGR00461 594 SAAMAGMQ----------------------------VVPVNCDQDG---------------------NID--------LV 616 (939)
T ss_pred HHHHCCCE----------------------------EEEeccCCCC---------------------CcC--------HH
Confidence 43332200 1111110000 001 24
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccc-ccccCCcchhhhcCC
Q 002941 603 YISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG-FWRLGVETTADLLGC 680 (863)
Q Consensus 603 ~le~~l~~~i~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TG-fGRtG~~~a~e~~gv 680 (863)
+|++.++. +++++++|++ -|- . .|.+.++ +++|.++|+++|.++++|=++.. .+ +. ...-..
T Consensus 617 ~L~~~i~~-----~~~~taaV~iT~ps--t-~G~~e~~---I~eI~~iah~~G~~v~VDgAq~~al~--~l---~~Pg~~ 680 (939)
T TIGR00461 617 DLKNKAEQ-----HGDELAAVMVTYPS--T-HGVFEPT---IQHACDIVHSFGGQVYLDGANMNAQV--GL---TSPGDL 680 (939)
T ss_pred HHHHHHhh-----cCCceEEEEEEeCC--c-Cceeccc---HHHHHHHHHHcCCEEEEEecChhhCC--CC---CCcccc
Confidence 56666642 3356777766 453 3 4655544 89999999999999999988853 21 11 111123
Q ss_pred CCcEEEec--cccC-----CCCCCceeeeccHHHHHhhhcCCc---------cce-eecccCCCccHHHHHHHHHHHHHh
Q 002941 681 VPDIACYG--KLLT-----GGVIPLAATLATNAVFDSFVGDSK---------LKA-LLHGHSYSAHALGCAAAAKSIKWF 743 (863)
Q Consensus 681 ~PDivt~s--KgLg-----gG~~Pigav~~~~~i~~~l~~~~~---------~~~-~~~~~T~~~~pla~AAalAaL~~l 743 (863)
..|+++++ |+|+ || --+|.+.+++++...+....- ... ......+.++.+-+..+...|..+
T Consensus 681 GaDi~~~s~HKtf~~P~G~GG-Pg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~l 759 (939)
T TIGR00461 681 GADVCHLNLHKTFCIPHGGGG-PGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMM 759 (939)
T ss_pred CCCEEEecCCccCCCCCCCCC-CCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHH
Confidence 46999884 9776 55 456788888877666553210 000 011122456666666667777776
Q ss_pred cChhhHH---hHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc-cceE---EEEEEccCCcCCCCchHHHHHHHHHHHHCC
Q 002941 744 KDPQTNH---NIIPERRILRELWDLELIQQISSHRTVQRVVA-LGTL---CAIELQAAGCNAGYGSLYAASLLKKLREDG 816 (863)
Q Consensus 744 ~~~~l~~---~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-~Gl~---~~iel~~~~~~~~~~~~~~~~l~~~l~e~G 816 (863)
=.+++.+ ....++.++.++| .+ ..+.+ . .+ .|.+ +.+.+...+ ........++.++|.+.|
T Consensus 760 G~~GL~~~a~~ailnAnYl~~rL----~~---~~~~l-~-~~~~~~~~hEfv~~~~~~~---~~~g~~~~dIakrL~d~G 827 (939)
T TIGR00461 760 GNEGLPKASVVAILNANYMATRL----KD---HYPIL-F-VGTLKHVAHECILDLRPLK---AKTGIEAIDVAKRLQDYG 827 (939)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh----hc---cCccc-c-cCCCCceeEEEEEeccchh---hhcCCCHHHHHHHHHhCC
Confidence 4444432 2333444554433 22 11211 1 12 1221 222222110 001123678999999999
Q ss_pred cEEE----ecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 002941 817 VYMR----PLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVE 857 (863)
Q Consensus 817 V~~~----p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~~~ 857 (863)
+... |..+.+.+.|.-..|++|||++++++.+.-+++.++.
T Consensus 828 ~hapt~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~e~~~~~ 872 (939)
T TIGR00461 828 FHAPTLSFPVPGTLMVEPTESESLEELDRFCDAMIAIKEEINALV 872 (939)
T ss_pred eeccccCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9764 3335788888888899999999999998888887753
No 319
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=98.82 E-value=6.3e-07 Score=105.16 Aligned_cols=219 Identities=13% Similarity=0.135 Sum_probs=121.2
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc--CCeEEEecccccccccCCcchhhhcCCCCc-EE---EeccccC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA---CYGKLLT 692 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~--gilLI~DEV~TGfGRtG~~~a~e~~gv~PD-iv---t~sKgLg 692 (863)
.-+.+|+.| ++..|.+ .+++.+++|.++|++| |+++|.|||+..|.. .+-. .....|| ++ +|||.++
T Consensus 241 ~kai~l~nP--~NPTG~v-ls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~~~s--l~~~~~~~vI~v~SfSK~fg 313 (521)
T TIGR03801 241 IKALFVVNP--SNPPSVA-MSDESIEKIVDIVANDRPDLMILTDDVYGTFVD--DFRS--LFAELPYNTIGVYSFSKYFG 313 (521)
T ss_pred CcEEEEeCC--CCCCCCC-CCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc--cccc--hhhhCCCCEEEEEcchhhcc
Confidence 345566789 7888854 5788899999999987 999999999976631 1111 1112343 33 5799886
Q ss_pred -CCCCCceeeeccHH-HHHh------------hhcC-C-----------------ccceeecccCCCccHHHHH-----H
Q 002941 693 -GGVIPLAATLATNA-VFDS------------FVGD-S-----------------KLKALLHGHSYSAHALGCA-----A 735 (863)
Q Consensus 693 -gG~~Pigav~~~~~-i~~~------------l~~~-~-----------------~~~~~~~~~T~~~~pla~A-----A 735 (863)
.| +.+|+++++++ +++. +... + ..+.+...+|.+.+..... +
T Consensus 314 ~~G-~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a 392 (521)
T TIGR03801 314 ATG-WRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFS 392 (521)
T ss_pred Cch-hhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 66 89999999754 2221 1100 0 0001112234433333222 3
Q ss_pred HHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEEEEEccCCc---CCCCchH-----HHH
Q 002941 736 AAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIELQAAGC---NAGYGSL-----YAA 806 (863)
Q Consensus 736 alAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~iel~~~~~---~~~~~~~-----~~~ 806 (863)
+.+.|+. .+.+.+...+..++.++.+.+ .+ ..+ +...... |.++.+++..-.. ...|... ...
T Consensus 393 ~~all~~--~~~y~~~~~~~~~~R~~~l~~----~L-g~~-~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~ 464 (521)
T TIGR03801 393 LFALMDK--ENAYKAETKDICRRREKLLFR----GL-GLP-LQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPV 464 (521)
T ss_pred HHHHhcc--chhHHHHHHHHHHHHHHHHHH----hc-CCC-CcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHH
Confidence 3344431 233444444444444433322 22 111 1112233 4555566653110 0111110 134
Q ss_pred HHHHHHH-HCCcEEEec---C---CEEEEecCCC-CcHHHHHHHHHHHHHHHHHHHH
Q 002941 807 SLLKKLR-EDGVYMRPL---G---NVIYLMCGPC-SSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 807 ~l~~~l~-e~GV~~~p~---g---~~lr~~ppl~-~t~eeid~~v~~L~~~l~~l~~ 855 (863)
+++.+|. +.||.+.|+ | +.+|++ ++ .+++++.++.++|.+.+++..+
T Consensus 465 ~~~~~L~~e~gV~v~PG~~Fg~~~~~vRis--la~l~~~~~~~~~~rl~~~~~~~~~ 519 (521)
T TIGR03801 465 DVLFRLAEETGIVLLPGGGFGGPEWSVRVS--LANLNEYDYAEIGRAIRKILDEYYE 519 (521)
T ss_pred HHHHHHHHhCCEEEeCchhcCCCCCeEEEE--ecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5666666 669999874 2 468875 44 6899999999999998877653
No 320
>PRK05367 glycine dehydrogenase; Provisional
Probab=98.82 E-value=7e-07 Score=111.44 Aligned_cols=313 Identities=12% Similarity=0.057 Sum_probs=168.5
Q ss_pred hHHHHHHHHHHhhcCCCCCCeEE-EeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcc
Q 002941 443 EPALECAELLLQGVGKGWASRAY-FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (863)
Q Consensus 443 ~~~~eLae~L~~~~p~~~~~~v~-f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~ 521 (863)
+...++.+.|++++|- +.+. ..|+|+.|+.++|..+ |.|+..+|.. + +++|....+-||+..
T Consensus 542 ~~i~e~q~~l~eltG~---d~~sl~~~~ga~ge~agL~a~-r~~~~~~G~~-~------------r~~vlis~~aH~snp 604 (954)
T PRK05367 542 ELIDQLEAWLAEITGY---DAVSLQPNAGAQGEYAGLLAI-RAYHESRGEG-H------------RDVCLIPSSAHGTNP 604 (954)
T ss_pred HHHHHHHHHHHHHHCC---CCEEECccHHHHHHHHHHHHH-HHHhhccCCC-C------------CCEEEEEchhhhhhH
Confidence 4567888999999983 4554 4557788887888555 7776555541 1 245666677788765
Q ss_pred ccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHH
Q 002941 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (863)
Q Consensus 522 gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 601 (863)
.++...|-. +..++.... ..-| .
T Consensus 605 ~sa~~~G~~----------------------------vv~v~~d~~---------------------G~iD--------~ 627 (954)
T PRK05367 605 ASAVMAGMK----------------------------VVVVACDEN---------------------GNID--------L 627 (954)
T ss_pred HHHHHCCCE----------------------------EEEECCCCC---------------------CCcC--------H
Confidence 554332200 111111100 0011 2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEE-EccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALI-IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvI-vEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (863)
++|++.++. +..++++|+ .-|- ..|++..+ +++|.++|+++|+++++|.++.+ +-.|.. .-.. .
T Consensus 628 ~~L~~~i~~-----~~~~la~V~it~ps--t~G~~e~~----I~eI~~i~h~~G~~v~VDgA~~~-al~~l~-~pg~--~ 692 (954)
T PRK05367 628 DDLRAKAEE-----HADNLAAIMITYPS--THGVFEET----IREICEIVHEHGGQVYLDGANMN-AQVGLA-RPGD--I 692 (954)
T ss_pred HHHHHHHhc-----cCCCeEEEEEEcCC--CCeeecCC----HHHHHHHHHHcCCEEEEECcChh-hccCCC-Chhh--c
Confidence 456666642 233555554 4563 33332334 89999999999999999999942 122211 0011 2
Q ss_pred CCcEEEec--cccC----CCCCCceeeeccHHHHHhhhcCCcc-ceeec-ccCCCccHH----HHHHHHHHHHHhcChhh
Q 002941 681 VPDIACYG--KLLT----GGVIPLAATLATNAVFDSFVGDSKL-KALLH-GHSYSAHAL----GCAAAAKSIKWFKDPQT 748 (863)
Q Consensus 681 ~PDivt~s--KgLg----gG~~Pigav~~~~~i~~~l~~~~~~-~~~~~-~~T~~~~pl----a~AAalAaL~~l~~~~l 748 (863)
-.|+++++ |.++ +|---+|.+.+++.+...+...... ..... .++....+. .+..+...+..+=.+++
T Consensus 693 GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Gl 772 (954)
T PRK05367 693 GADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGL 772 (954)
T ss_pred CCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHH
Confidence 36999886 9774 3313355677777776665532100 00000 011111222 22223344444433434
Q ss_pred HHhHH---HHHHHHHHHHHHHHHHHHhcCCCee----EecccceEEEE-EEccCCcCCCCchHHHHHHHHHHHHCCcEEE
Q 002941 749 NHNII---PERRILRELWDLELIQQISSHRTVQ----RVVALGTLCAI-ELQAAGCNAGYGSLYAASLLKKLREDGVYMR 820 (863)
Q Consensus 749 ~~~l~---~~~~~l~~~l~~~l~~~~~~~p~v~----~vrg~Gl~~~i-el~~~~~~~~~~~~~~~~l~~~l~e~GV~~~ 820 (863)
.+... .++.++.++| .+. .+... ...-...++-+ .+... ....+..+.++|.+.|+...
T Consensus 773 r~~a~~~~~~A~Yl~~~L----~~~---~~~~~~~~~~~~~~e~i~~~~~~~~~------~g~~~~di~krL~d~G~~~~ 839 (954)
T PRK05367 773 RQATEVAILNANYIAKRL----KDH---YPVLYTGANGRVAHECILDLRPLKES------TGITVDDIAKRLIDYGFHAP 839 (954)
T ss_pred HHHHHHHHHHHHHHHHHH----Hhh---cCccccCCCCCcccceEEEeeccccc------CCCCHHHHHHHHHHCCCeEe
Confidence 33332 3444444433 221 11100 00011122222 11110 00125679999999999875
Q ss_pred e----cCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 002941 821 P----LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVE 857 (863)
Q Consensus 821 p----~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~~~ 857 (863)
. ..+.+++.|.-..+++|||+++++|.....++.++.
T Consensus 840 t~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~~~ 880 (954)
T PRK05367 840 TMSFPVAGTLMVEPTESESKAELDRFCDAMIAIRAEIDEVE 880 (954)
T ss_pred ecCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 357899999888999999999999999988887753
No 321
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=98.79 E-value=3.3e-07 Score=104.20 Aligned_cols=170 Identities=12% Similarity=0.059 Sum_probs=97.6
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCC-C
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGG-V 695 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG-~ 695 (863)
++.+|++|.. .+..|.+.+ +++|.++|++||+++|+|+++. .+...... ....|++++ .|.++|. -
T Consensus 131 ~tklv~le~p-snptg~v~d----l~~I~~la~~~g~~vivD~a~~-~~~~~~~l-----~~g~Di~v~S~tK~l~G~~~ 199 (378)
T TIGR01329 131 KTKLVLLESP-TNPLQKIVD----IRKISEMAHAQNALVVVDNTMM-SPLLCNPL-----ELGADIVYHSATKFLAGHSD 199 (378)
T ss_pred CceEEEEECC-CCCCCeeec----HHHHHHHHHHcCCEEEEECCCc-ccccCChh-----hcCCcEEEEecceeccCCcc
Confidence 4668888875 788887776 9999999999999999999983 22221111 224688765 6999752 1
Q ss_pred CCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 696 IPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 696 ~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
.-.|++++ ++++.+.+..- ........+|..++.++..|+.+. ...++-.+++..+.++| ++|
T Consensus 200 ~~~G~v~~~~~~~~~~~~~~------~~~~G~~~~~~~a~l~~~~l~tl~--~R~e~~~~na~~la~~L--------~~~ 263 (378)
T TIGR01329 200 VMAGVLAVKGEEIAKKVYFL------QNSTGSGLAPFDCWLLLRGIKTLA--IRIEKQQENARAIAMFL--------STH 263 (378)
T ss_pred ceeEEEEeCcHHHHHHHHHH------HHhcCCcCCHHHHHHHHccCCCHH--HHHHHHHHHHHHHHHHH--------HhC
Confidence 23566666 45554544321 111123346666654444443321 12344445555555433 333
Q ss_pred CCeeE------------------ecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC
Q 002941 775 RTVQR------------------VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG 823 (863)
Q Consensus 775 p~v~~------------------vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g 823 (863)
|.|.. ..|.|.++.+++... ..+.+|...|...++.++-+|
T Consensus 264 ~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~--------~~~~~~~~~L~~~~i~~s~G~ 322 (378)
T TIGR01329 264 PRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSV--------ALSKRLVEATKLFSITVSFGS 322 (378)
T ss_pred CCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCH--------HHHHHHHHhCcCcccccCCCC
Confidence 33321 136788999999321 135677777755555555444
No 322
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=98.79 E-value=3.3e-07 Score=104.32 Aligned_cols=83 Identities=16% Similarity=0.014 Sum_probs=55.9
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVI 696 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~ 696 (863)
++.+|++|-. .+..|.+.+ +++|.++|++||+++|+|++++.. ..+.. .+...|++++ .|.++|.--
T Consensus 134 ~t~lV~lesP-~Nptg~~~d----i~~I~~la~~~gi~vivD~t~a~~-~~~~p-----~~~gaDivv~S~tK~l~g~~d 202 (380)
T PRK06176 134 NTKALYLETP-SNPLLKITD----LAQCASVAKDHGLLTIVDNTFATP-YYQNP-----LLLGADIVVHSGTKYLGGHSD 202 (380)
T ss_pred CceEEEEECC-CCCCceecC----HHHHHHHHHHcCCEEEEECCcccc-ccCCc-----cccCCCEEEecCceeccCCcc
Confidence 4678888865 778887765 889999999999999999998532 22222 2345688876 498875211
Q ss_pred C-ceeeec-cHHHHHhhh
Q 002941 697 P-LAATLA-TNAVFDSFV 712 (863)
Q Consensus 697 P-igav~~-~~~i~~~l~ 712 (863)
. .|++++ ++++++.+.
T Consensus 203 ~~gG~vv~~~~~~~~~~~ 220 (380)
T PRK06176 203 VVAGLVTTNNEALAQEIA 220 (380)
T ss_pred ceeeEEEecHHHHHHHHH
Confidence 2 344555 456655543
No 323
>PRK09028 cystathionine beta-lyase; Provisional
Probab=98.78 E-value=4.6e-07 Score=103.31 Aligned_cols=288 Identities=14% Similarity=0.104 Sum_probs=161.7
Q ss_pred CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCc
Q 002941 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (863)
Q Consensus 441 ~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t 520 (863)
.++...+|+++|+++-+. +.+++++||++|+..++...++ .| .+||+.+..|.+..
T Consensus 59 ~npt~~~Le~~iA~le~~---~~~~~~~sG~~Ai~~~l~all~---------~G------------D~Vvv~~~~Y~~t~ 114 (394)
T PRK09028 59 GTPTHFAFQAAIVELEGG---AGTALYPSGAAAISNALLSFLK---------AG------------DHLLMVDSCYEPTR 114 (394)
T ss_pred CCchHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHhC---------CC------------CEEEEECCCcHHHH
Confidence 345567899999998653 4688999999999988865421 22 56888888886653
Q ss_pred cccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHH
Q 002941 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (863)
Q Consensus 521 ~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 600 (863)
......- .. ++ +....++ . .+
T Consensus 115 ~l~~~~l--~~------------~G-------------i~v~~v~-----------------------~-~~-------- 135 (394)
T PRK09028 115 DLCDKIL--KG------------FG-------------IETTYYD-----------------------P-MI-------- 135 (394)
T ss_pred HHHHHhh--hh------------cc-------------eEEEEEC-----------------------C-CC--------
Confidence 2110000 00 00 0000000 0 01
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC
Q 002941 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (863)
Q Consensus 601 ~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (863)
.+.+++.+. .+..+|++|.. .+..|.+. -+++|.++|++||+++|+||+++. +. .+.-+..
T Consensus 136 ~e~l~~~l~--------~~TklV~lesp-sNPtg~v~----dl~~I~~la~~~g~~lvvD~t~a~----p~--~~~Pl~~ 196 (394)
T PRK09028 136 GEGIRELIR--------PNTKVLFLESP-GSITMEVQ----DVPTLSRIAHEHDIVVMLDNTWAS----PI--NSRPFEM 196 (394)
T ss_pred HHHHHHhcC--------cCceEEEEECC-CCCCCcHH----HHHHHHHHHHHcCCEEEEECCccc----cc--cCCcccc
Confidence 123444442 24668999986 77776554 489999999999999999999952 21 1222334
Q ss_pred CCcEEEe--ccccCCC-CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHH
Q 002941 681 VPDIACY--GKLLTGG-VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERR 757 (863)
Q Consensus 681 ~PDivt~--sKgLggG-~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~ 757 (863)
-+|+++. .|.++|. =.-.|+++.++++.+.+.... ...| ...+|..|.-.+-.|+-|. -..++-.+++.
T Consensus 197 GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~----~~~G--~~~~p~~a~l~~rgl~TL~--lR~~~~~~na~ 268 (394)
T PRK09028 197 GVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHS----YLMG--QCTSPDDVYLAMRGLRTLG--VRLAQHEKNAL 268 (394)
T ss_pred CceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHH----HhcC--CCCCHHHHHHHHcccCcHH--HHHHHHHHHHH
Confidence 5788865 6998652 133455666777766554210 0112 2346666665554444331 11234444444
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEccCCcCCCCchHHHHHHHHHHH--HCCc
Q 002941 758 ILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLR--EDGV 817 (863)
Q Consensus 758 ~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~--e~GV 817 (863)
.+.+ .+++||.|..| .|.|.|+.+++...+ ...+.+|.+.|. ..|.
T Consensus 269 ~la~--------~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~------~~~~~~f~~~l~l~~~~~ 334 (394)
T PRK09028 269 KVAN--------WLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGD------PKAVTALVEGMQHFKMGF 334 (394)
T ss_pred HHHH--------HHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCC------HHHHHHHHHhCCcceEec
Confidence 4443 45566655444 367889999996321 112344444442 1111
Q ss_pred --------EEEe--------------cCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 002941 818 --------YMRP--------------LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 856 (863)
Q Consensus 818 --------~~~p--------------~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~~ 856 (863)
+..| .++.+||+ +.-|+.+.+++-|+++|+.+..+
T Consensus 335 slG~~~sLv~~p~~~~~~~~~~~~~~~~~liR~s----vGlEd~~dLi~Dl~~Al~~~~~~ 391 (394)
T PRK09028 335 SWGGFESLILGVFGINKLRTATNWDFSKPLIRLH----IGLEDVDDLIADLEAGFERYNAV 391 (394)
T ss_pred ccCCCcceeECCCCcCccCchhhhcCCCCeEEEE----eCcCCHHHHHHHHHHHHHHHHHH
Confidence 1011 12456664 44456777888888888776654
No 324
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.75 E-value=8.5e-07 Score=102.51 Aligned_cols=64 Identities=19% Similarity=0.110 Sum_probs=47.9
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG 693 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLgg 693 (863)
+..+|++|.+ .++.|.+.+ +++|.++|++||+++|+|+++. .+... .......|+++ +.|.++|
T Consensus 155 ~tklV~ie~~-sNp~G~v~D----l~~I~~la~~~gi~liVD~t~a-~~~~~-----~pl~~GaDivv~S~tK~lgg 220 (436)
T PRK07812 155 NTKAFFAETI-SNPQIDVLD----IPGVAEVAHEAGVPLIVDNTIA-TPYLI-----RPLEHGADIVVHSATKYLGG 220 (436)
T ss_pred CCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-ccccC-----CchhcCCCEEEEecccccCC
Confidence 4568999987 888898887 9999999999999999999884 22221 11223478875 5798864
No 325
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=98.74 E-value=1e-07 Score=104.57 Aligned_cols=142 Identities=19% Similarity=0.184 Sum_probs=82.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (863)
+.+++.+.+ +++..+.++..|. ..|...+ +++|.++|++||+++|+||+|.+.-..+..+-.......
T Consensus 143 ~~l~~~l~~-----~~~~k~v~l~~p~---~~G~~~d----l~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~ 210 (294)
T cd00615 143 ETFKKALIE-----HPDAKAAVITNPT---YYGICYN----LRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAG 210 (294)
T ss_pred HHHHHHHHh-----CCCceEEEEECCC---CCCEecC----HHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcC
Confidence 456666642 2334456666774 3677665 899999999999999999999643222211111111234
Q ss_pred CcEEE--eccccCCCCCCceeee-ccHHHH--HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC--hhhHHhHHH
Q 002941 682 PDIAC--YGKLLTGGVIPLAATL-ATNAVF--DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD--PQTNHNIIP 754 (863)
Q Consensus 682 PDivt--~sKgLggG~~Pigav~-~~~~i~--~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~--~~l~~~l~~ 754 (863)
.|+++ +.|.++| ++.++++ .+.+.. +.+.. .+....|.+.+.+.+++..++++++.+ .++.+++.+
T Consensus 211 ~div~~S~hK~l~g--~~~~~~l~~~~~~~~~~~~~~-----~~~~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~ 283 (294)
T cd00615 211 ADIVVQSTHKTLPA--LTQGSMIHVKGDLVNPDRVNE-----ALNLHQSTSPSYLILASLDVARAMMALEGKELVEELIE 283 (294)
T ss_pred CcEEEEchhcccch--HhHHHHHHhCCCcCCHHHHHH-----HHHHHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 68875 4798854 4444443 443321 11211 111234556777888888888887742 345556666
Q ss_pred HHHHHHHH
Q 002941 755 ERRILREL 762 (863)
Q Consensus 755 ~~~~l~~~ 762 (863)
+.+.+++.
T Consensus 284 ~~~~~r~~ 291 (294)
T cd00615 284 LALYARQE 291 (294)
T ss_pred HHHHHHHH
Confidence 66665553
No 326
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=98.74 E-value=5.4e-07 Score=101.89 Aligned_cols=210 Identities=14% Similarity=0.108 Sum_probs=118.0
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIP 697 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~P 697 (863)
+..|.+--. -+..|++.| +++ +++++|+++|+|=+++ +|-. ..-.+ .-|++++| |++++= --
T Consensus 129 ~~lV~~~h~-et~tG~~~p----i~~---I~~~~g~~~iVDavqs-~g~~--~idv~----~~D~~~~s~~K~lg~~-~G 192 (361)
T TIGR01366 129 VDVIAWAHN-ETSTGVAVP----VRR---PEGSDDALVVIDATSG-AGGL--PVDIA----ETDVYYFAPQKNFASD-GG 192 (361)
T ss_pred CCEEEEccc-CCccceecc----ccc---ccccCCCeEEEEcCcc-ccCC--CCCHH----HCCEEEEEchhhcCCC-Cc
Confidence 333433332 334677776 333 4689999999999985 4321 22222 15988886 888631 01
Q ss_pred ceeeeccHHHHHhhhcCC---ccce-e----------ecccCCCccHH-HHHHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 002941 698 LAATLATNAVFDSFVGDS---KLKA-L----------LHGHSYSAHAL-GCAAAAKSIKWFKDPQTNHNIIPERRILREL 762 (863)
Q Consensus 698 igav~~~~~i~~~l~~~~---~~~~-~----------~~~~T~~~~pl-a~AAalAaL~~l~~~~l~~~l~~~~~~l~~~ 762 (863)
++.+.++++..+.+.... ...+ + .-+.|++..++ .+.+..++|+++++.+-.++..++.+.+.+.
T Consensus 193 l~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~ 272 (361)
T TIGR01366 193 LWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSR 272 (361)
T ss_pred eEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344566888876654210 0000 0 01234444344 4457788899886552234555555565555
Q ss_pred HHHHHHHHHhcCCCeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcH
Q 002941 763 WDLELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSP 836 (863)
Q Consensus 763 l~~~l~~~~~~~p~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~ 836 (863)
+.+.+.+...-.+.+..-. .......+.+.+. .....+...|.++||.+.+. ++.+|+.....+|+
T Consensus 273 l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~g--------~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~ 344 (361)
T TIGR01366 273 LYSWAQERPYATPFVTDPGKRSQVVGTIDFVDD--------IDAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDP 344 (361)
T ss_pred HHHHHHhCCCcccCCCChhhcccceEEEECCCc--------cCHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCH
Confidence 5433332211011111100 0112233444321 12456888888999998653 35799998778999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 837 eeid~~v~~L~~~l~~l 853 (863)
+||++++++|+++++++
T Consensus 345 ~di~~l~~al~~~~~~~ 361 (361)
T TIGR01366 345 DDVEALTECVDWVVERL 361 (361)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999987653
No 327
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=98.74 E-value=3.5e-06 Score=93.34 Aligned_cols=208 Identities=13% Similarity=0.103 Sum_probs=130.8
Q ss_pred cHHHHHHHHHHHHhccccc-CCCCCC-hHHHHHHHHHHhhcCCC--CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccc
Q 002941 418 QIELARDMGYTAARFGHVM-FPENVY-EPALECAELLLQGVGKG--WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLV 493 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~~-~~~~~~-~~~~eLae~L~~~~p~~--~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~t 493 (863)
..-|.+|+++.+....... ..++-+ +....|++++.++.+.. ..+.|+.+++..+|.-.++...+. .
T Consensus 46 P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~---------~ 116 (420)
T KOG0257|consen 46 PKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLN---------P 116 (420)
T ss_pred cHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcC---------C
Confidence 3456666666665532111 122323 44566777777755432 135799999999999888865521 2
Q ss_pred cccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhc
Q 002941 494 DFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (863)
Q Consensus 494 gr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~ 573 (863)
| ..||.++-.|--.......+++.+.|...- ...+. .. +.++
T Consensus 117 G------------DeVii~eP~fd~Y~~~~~maG~tpv~v~~~-----~~~g~---------------~~-s~~~----- 158 (420)
T KOG0257|consen 117 G------------DEVIVFEPFFDCYIPQVVMAGGTPVFVPLK-----PKEGN---------------VS-SSDW----- 158 (420)
T ss_pred C------------CEEEEecCcchhhhhHHhhcCCcceeeccc-----ccccc---------------cc-Cccc-----
Confidence 2 689999999988877666666554442110 00000 00 0000
Q ss_pred cccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc
Q 002941 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (863)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~ 653 (863)
..| .+.+|..+- +..-+.||..| ++..|-+. +++-|++|.+||++|
T Consensus 159 ----------------~~D--------~~~le~~~t-------~kTk~Ii~ntP--hNPtGkvf-sReeLe~ia~l~~k~ 204 (420)
T KOG0257|consen 159 ----------------TLD--------PEELESKIT-------EKTKAIILNTP--HNPTGKVF-SREELERIAELCKKH 204 (420)
T ss_pred ----------------cCC--------hHHHHhhcc-------CCccEEEEeCC--CCCcCccc-CHHHHHHHHHHHHHC
Confidence 011 134555553 34557788888 78888554 788899999999999
Q ss_pred CCeEEEecccccccccCC---cchhhhcCCCCcE----E---EeccccC-CCCCCceeeeccHHHHHhhh
Q 002941 654 KIPVIFDEVFTGFWRLGV---ETTADLLGCVPDI----A---CYGKLLT-GGVIPLAATLATNAVFDSFV 712 (863)
Q Consensus 654 gilLI~DEV~TGfGRtG~---~~a~e~~gv~PDi----v---t~sKgLg-gG~~Pigav~~~~~i~~~l~ 712 (863)
|+++|.|||+.-+-..|. .+++. |+| + .+||.++ -| +.+|.+++.+.++....
T Consensus 205 ~~lvisDevYe~~v~d~~~h~r~asl-----Pgm~ertitvgS~gKtf~~TG-WrlGW~igp~~L~~~~~ 268 (420)
T KOG0257|consen 205 GLLVISDEVYEWLVYDGNKHIRIASL-----PGMYERTITVGSFGKTFGVTG-WRLGWAIGPKHLYSALF 268 (420)
T ss_pred CEEEEEhhHhHHHhhCCCcceeeecC-----CchhheEEEeccccceeeeee-eeeeeeechHHhhhhHH
Confidence 999999999976655553 23332 543 3 4689665 35 99999999888887665
No 328
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.73 E-value=6.6e-07 Score=103.42 Aligned_cols=162 Identities=14% Similarity=0.084 Sum_probs=100.3
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
..++...+|+++|+++.+. +.+++++||+.|+..++...++ .| .+||+....|+|.
T Consensus 61 ~~~p~~~~Le~~lA~leg~---~~al~~~sG~~Ai~~al~~ll~---------~G------------D~Vlv~~~~y~~t 116 (431)
T PRK08248 61 IMNPTTDVFEKRIAALEGG---IGALAVSSGQAAITYSILNIAS---------AG------------DEIVSSSSLYGGT 116 (431)
T ss_pred CCCchHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHhC---------CC------------CEEEEccCchhhH
Confidence 4567788999999999873 6789999999999999865421 12 4688887776654
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
......... . .|+....+|. .|
T Consensus 117 ~~~~~~~~~--~-------------------------~Gv~v~~vd~------------------------~d------- 138 (431)
T PRK08248 117 YNLFAHTLP--K-------------------------LGITVKFVDP------------------------SD------- 138 (431)
T ss_pred HHHHHHHHH--h-------------------------CCEEEEEECC------------------------CC-------
Confidence 211111000 0 0000111110 01
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.+. +++.+|++|.. .+..|.+.+ +++|.++|++||+++|+|+++. .+.. ..-..
T Consensus 139 -~e~l~~ai~--------~~tklV~l~sp-~NPtG~v~d----i~~I~~la~~~gi~vIvD~t~a-~~~~-----~~pl~ 198 (431)
T PRK08248 139 -PENFEAAIT--------DKTKALFAETI-GNPKGDVLD----IEAVAAIAHEHGIPLIVDNTFA-SPYL-----LRPIE 198 (431)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEeCCCC-cccc-----CChhH
Confidence 133444442 24567778765 788887776 7899999999999999999974 1111 11112
Q ss_pred CCCcEEEe--ccccCCCCCCceeeec
Q 002941 680 CVPDIACY--GKLLTGGVIPLAATLA 703 (863)
Q Consensus 680 v~PDivt~--sKgLggG~~Pigav~~ 703 (863)
...|+++. .|.++|.-..+|++++
T Consensus 199 ~gaDivv~S~tK~lgg~g~~~Gg~v~ 224 (431)
T PRK08248 199 HGADIVVHSATKFIGGHGTSIGGVIV 224 (431)
T ss_pred cCCCEEEEcCccccCCCCCceEEEEE
Confidence 34788765 6999853245666655
No 329
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.67 E-value=8.6e-07 Score=102.50 Aligned_cols=154 Identities=14% Similarity=0.092 Sum_probs=94.0
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
...++...+|+++|+++.+. +..++++||+.|+.+|+...++ .| ..||+....|+|
T Consensus 65 r~~~pt~~~le~~la~l~g~---~~~v~fsSG~~Ai~~al~~ll~---------~G------------d~VI~~~~~y~~ 120 (437)
T PRK05613 65 RLTNPTVEALENRIASLEGG---VHAVAFASGQAAETAAILNLAG---------AG------------DHIVTSPRLYGG 120 (437)
T ss_pred CccChHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHhcC---------CC------------CEEEECCCccHH
Confidence 34567888999999998873 5788888999999988764421 12 468887777766
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
........-. ..+. .+..++.| .|
T Consensus 121 t~~~~~~~l~--------------~~Gi-----------~v~~vd~~-------------------------~d------ 144 (437)
T PRK05613 121 TETLFLVTLN--------------RLGI-----------EVTFVENP-------------------------DD------ 144 (437)
T ss_pred HHHHHHHHHH--------------hcCe-----------EEEEECCC-------------------------CC------
Confidence 5211111000 0000 00001100 01
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. .++.+|++|.. .+..|.+.+ +++|.++|+++|+++|+|.++. .|.. .--..+
T Consensus 145 --~e~l~~~l~--------~~tk~V~~e~~-~Np~~~v~d----i~~I~~la~~~gi~livD~t~a-~g~~---~~p~~~ 205 (437)
T PRK05613 145 --PESWQAAVQ--------PNTKAFFGETF-ANPQADVLD----IPAVAEVAHRNQVPLIVDNTIA-TAAL---VRPLEL 205 (437)
T ss_pred --HHHHHHhCC--------ccCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCeEEEECCCc-cccc---cChHHh
Confidence 134555543 23557888875 566676666 9999999999999999999983 3222 111123
Q ss_pred CCCCcEEEec--cccCC
Q 002941 679 GCVPDIACYG--KLLTG 693 (863)
Q Consensus 679 gv~PDivt~s--KgLgg 693 (863)
| .|++++| |-++|
T Consensus 206 G--aDivv~S~~K~l~G 220 (437)
T PRK05613 206 G--ADVVVASLTKFYTG 220 (437)
T ss_pred C--CCEEEeeccceecC
Confidence 4 5999775 88875
No 330
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=98.64 E-value=1.9e-05 Score=90.55 Aligned_cols=232 Identities=15% Similarity=0.042 Sum_probs=122.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccccc-----------ccC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW-----------RLG 670 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfG-----------RtG 670 (863)
+.+++.+.. .+..+++.+.++-.++..|| .+.+...+++++++|++||+.||.|=++. +| ..|
T Consensus 164 d~Le~~I~~----~~~~~~~lV~a~itvn~~GG-qpvs~~~m~~I~elA~~~Gl~Vi~DaAra-~gna~fI~~re~~y~~ 237 (460)
T PRK13237 164 DKLQALIDE----VGAENIAYICLAVTVNLAGG-QPVSMANMRAVRELCDKHGIKVFFDATRC-VENAYFIKEREEGYQD 237 (460)
T ss_pred HHHHHHhcc----ccCCccCceEEEEecccCCC-eeCCHHhHHHHHHHHHHcCCEEEEECcch-hcChhhhcccccccCC
Confidence 456666642 23345554554433243345 66678889999999999999999998884 43 111
Q ss_pred Ccch--hhhcCCCCcEEEec--cccCCCCCCc-eeeec-cHHHHHhhhcCCccceeecccCCCccHH-HHHHHHHHHHHh
Q 002941 671 VETT--ADLLGCVPDIACYG--KLLTGGVIPL-AATLA-TNAVFDSFVGDSKLKALLHGHSYSAHAL-GCAAAAKSIKWF 743 (863)
Q Consensus 671 ~~~a--~e~~gv~PDivt~s--KgLggG~~Pi-gav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pl-a~AAalAaL~~l 743 (863)
+.-. ....+-..|++||| |.++. |+ |++++ ++++++.++.-.. .+....||+|-.. -++|.--.|...
T Consensus 238 ~~i~ei~~e~~s~aD~~t~S~~K~~~~---~~GG~i~t~D~eL~~~~r~~~~--~~eG~~tygg~~grd~~alAvgl~E~ 312 (460)
T PRK13237 238 KSIKEIVHEMFSYADGCTMSGKKDCLV---NIGGFLAMNDEELFDEAKELVV--VYEGMPSYGGMAGRDMEAMAIGIEES 312 (460)
T ss_pred CcHhHHhhhccCcCcEEEEeCCCCCCC---CCceEEEECCHHHHHHHHHhcc--ccCCCcCCCChhhhHHHHHHhHHHhh
Confidence 1100 01112246998886 65542 33 34544 5777776654210 1112336665322 222221123333
Q ss_pred cChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC---cCCCCchHHHHHHHHHHH-HCCcEE
Q 002941 744 KDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG---CNAGYGSLYAASLLKKLR-EDGVYM 819 (863)
Q Consensus 744 ~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~---~~~~~~~~~~~~l~~~l~-e~GV~~ 819 (863)
.++++..+-..+.++|.+.|.+ ...|.+....| .-+.|+...-. ....| -+..++.+|+ +-||-.
T Consensus 313 ~~~~y~~~ri~~~~~l~~~L~~------~Gvpv~~p~gg--H~v~vda~~~lph~~~~~~---p~~al~~~ly~~~GiR~ 381 (460)
T PRK13237 313 VQYEYIEHRVGQVRYLGEKLLA------AGVPIVEPVGG--HAVFLDARRFLPHLPQDQF---PAQALAAELYIESGVRS 381 (460)
T ss_pred chHHHHHHHHHHHHHHHHHHHH------CCCceecCCCc--eEEEEEhHHhCCCCCcccC---hHHHHHHHHHHHhCcCe
Confidence 3446666666677777765432 23455544333 33334433210 11122 2344555554 334433
Q ss_pred -------E---ecC--------CEEEEecCCC-CcHHHHHHHHHHHHHHHHHHHH
Q 002941 820 -------R---PLG--------NVIYLMCGPC-SSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 820 -------~---p~g--------~~lr~~ppl~-~t~eeid~~v~~L~~~l~~l~~ 855 (863)
. |.+ ..+|+..|-- -|.+++|.+.++|....++-+.
T Consensus 382 ~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~ 436 (460)
T PRK13237 382 MERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHRED 436 (460)
T ss_pred EeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHhHhh
Confidence 1 111 4567766664 4999999999999887765443
No 331
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=98.62 E-value=8.6e-06 Score=93.95 Aligned_cols=219 Identities=14% Similarity=0.064 Sum_probs=118.4
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhh----h
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD----L 677 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e----~ 677 (863)
+.+++.+.+ ..++.+++|+..|- .+..|. .+-+++|.++|++||+.+|+|+++. ++ ..+..+ .
T Consensus 192 e~Le~aIt~----~~~kai~~Vv~Tp~-t~~~g~----~ddL~eIa~la~k~gI~lIvDaAyg-~~---~~~~~~~~~~g 258 (444)
T TIGR03531 192 EDIERAIEE----IGPDNILCVLSTTS-CFAPRS----PDDIEEIAKICANYDIPHIVNNAYG-LQ---SNKYMELINKA 258 (444)
T ss_pred HHHHHHHHh----ccCCCEEEEEEcCC-cCCCcc----hhCHHHHHHHHHHcCCEEEEECcCc-Cc---Chhhhhhhhcc
Confidence 456677753 12256788887774 333232 3349999999999999999999994 42 111111 1
Q ss_pred cCC-CCcEEEe--ccccCCCCCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHH
Q 002941 678 LGC-VPDIACY--GKLLTGGVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (863)
Q Consensus 678 ~gv-~PDivt~--sKgLggG~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~ 753 (863)
... ..|++++ .|.+... ..-|++++ ++++++.+... ..+ .....| +..+..+.+. +-.+. ++++.
T Consensus 259 ~~~Grad~vv~s~hK~l~~p-g~Gg~I~~~d~el~~~i~~~------y~g-~~~~s~-~~~~~~~ll~-~G~~g-~~~li 327 (444)
T TIGR03531 259 IKVGRVDAVVSSTDKNFMVP-VGGAIIYSFDENFIQEISKS------YPG-RASASP-SLDVLITLLS-LGSKG-YLELL 327 (444)
T ss_pred ccccCCCeEEEeCccCCCCC-CCEEEEEECCHHHHHHHHHh------ccC-CCCChH-HHHHHHHHHH-hCHHH-HHHHH
Confidence 112 3588876 5877531 11344546 67888777531 111 222222 3333333333 32233 34444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEE----Eec------
Q 002941 754 PERRILRELWDLELIQQISSHR-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM----RPL------ 822 (863)
Q Consensus 754 ~~~~~l~~~l~~~l~~~~~~~p-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~----~p~------ 822 (863)
+.-..+.+.+.+.|.+...++. .+.+++.--.-+++.+.... ......+...|+.++|-- .+.
T Consensus 328 ~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~------~~~~~~~g~~l~~~~v~g~r~v~~~~~~~~~ 401 (444)
T TIGR03531 328 KERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLK------GKDPTMLGSMLYSRRVTGPRVVTNGDSKTVG 401 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEeccccc------ccCHHHHHHHHHhCCCCCceeecCCCceEEC
Confidence 4455556666666666655554 24444444444555554221 112556777787776621 111
Q ss_pred -------C--------CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 823 -------G--------NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 823 -------g--------~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
| .-+......-++.+|||.++++|++++
T Consensus 402 ~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~~ 444 (444)
T TIGR03531 402 GCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKSL 444 (444)
T ss_pred CEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhcC
Confidence 1 012222333468999999999998753
No 332
>PRK08064 cystathionine beta-lyase; Provisional
Probab=98.62 E-value=2.9e-06 Score=96.93 Aligned_cols=155 Identities=12% Similarity=0.044 Sum_probs=83.8
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCC-
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGV- 695 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~- 695 (863)
+..+|++|.. .+..|.+.+ +++|.++|+++|+++|+||++..+ -.... . .+ ..|+++. +|.++|.-
T Consensus 138 ~tklV~l~~p-~NptG~~~d----l~~I~~la~~~g~~vvvD~a~~~~-~~~~~--~-~~--g~Divv~S~tK~~~G~~~ 206 (390)
T PRK08064 138 NTKLFYVETP-SNPLLKVTD----IRGVVKLAKAIGCLTFVDNTFLTP-LLQKP--L-DL--GADVVLHSATKFLAGHSD 206 (390)
T ss_pred CceEEEEECC-CCCCcEecc----HHHHHHHHHHcCCEEEEECCCCcc-cccCc--h-hh--CCcEEEeecceeccCCcc
Confidence 4567777765 678887765 899999999999999999998532 11111 1 12 3588754 69886410
Q ss_pred CCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHH--HH---
Q 002941 696 IPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL--IQ--- 769 (863)
Q Consensus 696 ~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l--~~--- 769 (863)
.=.|++++ ++++++.+.. +...+....+|..+..++..++.+ +...++..++...+.++|.+.- .+
T Consensus 207 ~laG~~v~~~~~~~~~l~~------~~~~~g~~~~~~~a~l~~~gl~tl--~~R~~~~~~~a~~la~~L~~~~~v~~v~y 278 (390)
T PRK08064 207 VLAGLAVVKDEELAQKLYF------LQNSFGAVLGVQDCWLVLRGLKTL--HVRLEHSSETANKIALYLQEHPKVQNVYY 278 (390)
T ss_pred ceeEEEEeCCHHHHHHHHH------HHHhcCCCCCHHHHHHHHcccCcH--HHHHHHHHHHHHHHHHHHhcCCCcceEEC
Confidence 11243444 5677777653 112223334555555444333322 1122344444444444332210 00
Q ss_pred -HHhcCCCe----eEecccceEEEEEEc
Q 002941 770 -QISSHRTV----QRVVALGTLCAIELQ 792 (863)
Q Consensus 770 -~~~~~p~v----~~vrg~Gl~~~iel~ 792 (863)
.+..+|.. ....|.|.++.+++.
T Consensus 279 p~l~~~p~~~~~~~~~~g~gg~~sf~~~ 306 (390)
T PRK08064 279 PGLQTHLGFDIQQSQATSAGAVLSFTLQ 306 (390)
T ss_pred CCCCCCccHHHHHHhCCCcceEEEEEEC
Confidence 00111211 123478889999995
No 333
>PLN02880 tyrosine decarboxylase
Probab=98.61 E-value=1.5e-05 Score=93.74 Aligned_cols=240 Identities=11% Similarity=0.057 Sum_probs=123.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv- 680 (863)
+.|++.+++.. ..+....+|+..-- ....|.+-| +++|.++|++||+.|.+|=++.|+-..-..+-...-|+
T Consensus 224 ~~L~~~i~~~~--~~g~~p~~vvataG-TT~~GaiDp----l~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie 296 (490)
T PLN02880 224 ELLSEAISTDL--SSGLIPFFLCATVG-TTSSTAVDP----LLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVE 296 (490)
T ss_pred HHHHHHHHHHH--HCCCccEEEEEecC-CCcCcccCc----HHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCch
Confidence 44555554311 11234455555432 344566666 99999999999999999988866532211111122354
Q ss_pred CCcEEEe--ccccCCCCCCceeeeccHH--HHHhhhcCCcc-----c---eeecc--cCC-CccHHHHHHHHHHHHHhcC
Q 002941 681 VPDIACY--GKLLTGGVIPLAATLATNA--VFDSFVGDSKL-----K---ALLHG--HSY-SAHALGCAAAAKSIKWFKD 745 (863)
Q Consensus 681 ~PDivt~--sKgLggG~~Pigav~~~~~--i~~~l~~~~~~-----~---~~~~~--~T~-~~~pla~AAalAaL~~l~~ 745 (863)
.+|-+++ =|.+... ++.|+++++.. +.+.+...... . .+... .+. .+..........+|+.+=.
T Consensus 297 ~aDSit~d~HKwl~~P-~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~ 375 (490)
T PLN02880 297 EADSFNMNAHKWFLTN-FDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGV 375 (490)
T ss_pred hcCEEEECchhhcCCC-ccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCH
Confidence 6898887 4998766 67788887642 22323211100 0 00000 000 1112222334445665544
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE-ec-
Q 002941 746 PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR-PL- 822 (863)
Q Consensus 746 ~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~-p~- 822 (863)
+++.+.+.+ .-.+.+++ .+.+++.+.+.-+. ..-.++.+.+...............++.++|.+.|-+.. +.
T Consensus 376 ~g~~~~i~~-~~~lA~~~----~~~l~~~~~~el~~~~~~~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~ 450 (490)
T PLN02880 376 ENLQSYIRN-HIKLAKEF----EQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTV 450 (490)
T ss_pred HHHHHHHHH-HHHHHHHH----HHHHhcCCCEEEecCCceEEEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEE
Confidence 444444431 11333333 23344454332221 123355566543211111112344567777777775543 21
Q ss_pred --C-CEEEEecC-CCCcHHHHHHHHHHHHHHHHHHH
Q 002941 823 --G-NVIYLMCG-PCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 823 --g-~~lr~~pp-l~~t~eeid~~v~~L~~~l~~l~ 854 (863)
| ..+|++.. +.++++|++.+++.|.+..+++.
T Consensus 451 ~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~ 486 (490)
T PLN02880 451 LSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLL 486 (490)
T ss_pred ECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2 56777643 34577999999999999887764
No 334
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=98.61 E-value=1.6e-06 Score=98.59 Aligned_cols=238 Identities=17% Similarity=0.125 Sum_probs=139.1
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
...++-...|+++|+++-+. +.++.++||-.|+.+++...++ +| ..||.....|+|
T Consensus 51 R~gnPt~~~le~~la~Le~g---~~a~~~~SGmaAi~~~l~~ll~---------~G------------d~iv~~~~~Y~~ 106 (386)
T PF01053_consen 51 RYGNPTVRALEQRLAALEGG---EDALLFSSGMAAISAALLALLK---------PG------------DHIVASDDLYGG 106 (386)
T ss_dssp TTC-HHHHHHHHHHHHHHT----SEEEEESSHHHHHHHHHHHHS----------TT------------BEEEEESSSSHH
T ss_pred ccccccHHHHHHHHHHhhcc---cceeeccchHHHHHHHHHhhcc---------cC------------CceEecCCccCc
Confidence 45678889999999998773 6788899999999888875532 23 579999999988
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.....-... ..++ +....+ +..|
T Consensus 107 t~~~~~~~l--------------~~~g-------------v~v~~~------------------------d~~d------ 129 (386)
T PF01053_consen 107 TYRLLEELL--------------PRFG-------------VEVTFV------------------------DPTD------ 129 (386)
T ss_dssp HHHHHHHCH--------------HHTT-------------SEEEEE------------------------STTS------
T ss_pred chhhhhhhh--------------cccC-------------cEEEEe------------------------Cchh------
Confidence 532211110 0000 000000 0011
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC-CeEEEecccccccccCCcchhhh
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK-IPVIFDEVFTGFWRLGVETTADL 677 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g-ilLI~DEV~TGfGRtG~~~a~e~ 677 (863)
.+.+++.++ +++.+|++|+. .+...-++. ++++.++|+++| +++|+|...... ..+.-
T Consensus 130 --~~~l~~~l~--------~~t~~v~~Esp-sNP~l~v~D----l~~i~~~a~~~g~~~~vVDnT~atp------~~~~p 188 (386)
T PF01053_consen 130 --LEALEAALR--------PNTKLVFLESP-SNPTLEVPD----LEAIAKLAKEHGDILVVVDNTFATP------YNQNP 188 (386)
T ss_dssp --HHHHHHHHC--------TTEEEEEEESS-BTTTTB-------HHHHHHHHHHTTT-EEEEECTTTHT------TTC-G
T ss_pred --HHHHHhhcc--------ccceEEEEEcC-CCccccccc----HHHHHHHHHHhCCceEEeeccccce------eeecc
Confidence 245667774 37899999997 666543333 999999999999 999999887421 23333
Q ss_pred cCCCCcEEEe--ccccCC-CCCCceeeecc--HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhH
Q 002941 678 LGCVPDIACY--GKLLTG-GVIPLAATLAT--NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (863)
Q Consensus 678 ~gv~PDivt~--sKgLgg-G~~Pigav~~~--~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l 752 (863)
+..-.|+++. .|-++| |=.-.|+++++ +++++.+.... ...|. ..+|..|...+-.|+-+. -..++.
T Consensus 189 L~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~----~~~G~--~~~p~da~ll~rgl~Tl~--~R~~~~ 260 (386)
T PF01053_consen 189 LELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFR----RLLGA--TLSPFDAWLLLRGLRTLP--LRMERQ 260 (386)
T ss_dssp GGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHH----HHHT---B--HHHHHHHHHHHTTHH--HHHHHH
T ss_pred CcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchh----hhcCc--cchHHHHHHHhcCCCcHH--HHHHHH
Confidence 3334798865 698864 21235566654 47777654311 01222 234555555444444331 112344
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeEec------------------ccceEEEEEEccC
Q 002941 753 IPERRILRELWDLELIQQISSHRTVQRVV------------------ALGTLCAIELQAA 794 (863)
Q Consensus 753 ~~~~~~l~~~l~~~l~~~~~~~p~v~~vr------------------g~Gl~~~iel~~~ 794 (863)
.+++.++. +.+++||.|..|. |.|.|++|++...
T Consensus 261 ~~nA~~lA--------~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~ 312 (386)
T PF01053_consen 261 NENAEALA--------EFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGG 312 (386)
T ss_dssp HHHHHHHH--------HHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSH
T ss_pred HHHHHHHH--------HHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccc
Confidence 44444443 4566788887664 6677999999864
No 335
>PRK08114 cystathionine beta-lyase; Provisional
Probab=98.60 E-value=2e-06 Score=97.97 Aligned_cols=237 Identities=15% Similarity=0.105 Sum_probs=140.9
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
...+|-...|+++|+++-+ .+.+++++||..|+.+++...++ .| ..||+....|+|
T Consensus 58 R~~nPt~~~le~~la~LEg---~~~a~~~~SGmaAi~~~~~~ll~---------~G------------D~Vv~~~~~Yg~ 113 (395)
T PRK08114 58 RRGTLTHFSLQEAMCELEG---GAGCALYPCGAAAVANAILAFVE---------QG------------DHVLMTGTAYEP 113 (395)
T ss_pred CCCChhHHHHHHHHHHHhC---CCeEEEEhHHHHHHHHHHHHHcC---------CC------------CEEEEeCCCcHH
Confidence 3457778899999999865 36788889999999998865421 12 467777777766
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
+....-..- ..+|.- +..+. + .|
T Consensus 114 t~~l~~~~l--------------~~~Gi~-----------v~~vd-~-------------------------~d------ 136 (395)
T PRK08114 114 TQDFCSKIL--------------SKLGVT-----------TTWFD-P-------------------------LI------ 136 (395)
T ss_pred HHHHHHHHH--------------HhcCcE-----------EEEEC-C-------------------------CC------
Confidence 532221100 000000 00000 0 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC--CeEEEecccccccccCCcchhh
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK--IPVIFDEVFTGFWRLGVETTAD 676 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g--ilLI~DEV~TGfGRtG~~~a~e 676 (863)
.+.+++.+. .+...|++|.+ .+..|.+++ +++|.++|+++| +++|+|.+++ . |.. ++
T Consensus 137 --~~~l~~~l~--------~~TrlV~~Etp-sNp~~~v~D----I~~Ia~ia~~~g~g~~lvVDnT~a-~---p~~--~~ 195 (395)
T PRK08114 137 --GADIAKLIQ--------PNTKVVFLESP-GSITMEVHD----VPAIVAAVRSVNPDAVIMIDNTWA-A---GVL--FK 195 (395)
T ss_pred --HHHHHHhcC--------CCceEEEEECC-CCCCCEeec----HHHHHHHHHHhCCCCEEEEECCCc-c---ccc--cC
Confidence 133455553 24678999997 888888887 999999999985 9999999984 2 222 44
Q ss_pred hcCCCCcEEEe--ccccCCC-CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHH
Q 002941 677 LLGCVPDIACY--GKLLTGG-VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (863)
Q Consensus 677 ~~gv~PDivt~--sKgLggG-~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~ 753 (863)
-...-.|+++. .|.|+|. =.-.|+++.++++.+.+.... ...|. ..+|..|.-.+-.|+-|. -..++-.
T Consensus 196 pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~----~~~G~--~~~p~~a~l~~rgl~TL~--lR~~~~~ 267 (395)
T PRK08114 196 ALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENS----YLMGQ--MVDADTAYMTSRGLRTLG--VRLRQHE 267 (395)
T ss_pred HHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHH----HhccC--CCCHHHHHHHHcCCCcHH--HHHHHHH
Confidence 44445899976 5988763 123555667777666554210 01121 345666655444444321 0123444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEcc
Q 002941 754 PERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (863)
Q Consensus 754 ~~~~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~ 793 (863)
+++..+.+ .+++||.|..| .|.|.|+.+++..
T Consensus 268 ~na~~va~--------~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~ 317 (395)
T PRK08114 268 ESSLKVAE--------WLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKK 317 (395)
T ss_pred HHHHHHHH--------HHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecC
Confidence 44444443 45566665433 3678899999964
No 336
>PLN03032 serine decarboxylase; Provisional
Probab=98.60 E-value=2.5e-05 Score=88.49 Aligned_cols=210 Identities=9% Similarity=-0.005 Sum_probs=113.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCC-----eEEEecccccccccCC-----
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI-----PVIFDEVFTGFWRLGV----- 671 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gi-----lLI~DEV~TGfGRtG~----- 671 (863)
+.|++.+++ ......+|++--. ..+.|.+-| +++|.++|++||+ +|.+|=++.|+ ..-.
T Consensus 149 ~~L~~~i~~-----~~~~~~lvv~tag-tt~tG~idp----i~eI~~i~~~~g~~~~~~~lHvDaA~gg~-~~p~~~~~~ 217 (374)
T PLN03032 149 DDLERALAK-----NRDKPAILNVNIG-TTVKGAVDD----LDRILRILKELGYTEDRFYIHCDGALFGL-MMPFVSRAP 217 (374)
T ss_pred HHHHHHHHH-----cCCCCEEEEEEec-CcCCccCCC----HHHHHHHHHHhCCCCCCeeEEEEccchhh-hhhccCCCc
Confidence 456666653 1223445555433 566787766 9999999999974 89999998553 2210
Q ss_pred cchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCcc--HHHHHHHHHHHHHhcChh
Q 002941 672 ETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAH--ALGCAAAAKSIKWFKDPQ 747 (863)
Q Consensus 672 ~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~--pla~AAalAaL~~l~~~~ 747 (863)
.+.+ ....|.++++ |.++.- .+.|+++.+++..+.+......-. ..-.|..|+ ....++..++|..+-.++
T Consensus 218 ~~~~---~~~vDSis~s~HK~~g~P-~g~G~ll~r~~~~~~~~~~~~Yl~-~~d~ti~gSR~g~~~l~~w~~l~~~G~~g 292 (374)
T PLN03032 218 EVTF---RKPIGSVSVSGHKFLGCP-MPCGVALTRKKHVKALSQNVEYLN-SRDATIMGSRNGHAPLYLWYTLRRKGYRG 292 (374)
T ss_pred ccCC---CcCCcEEEECcccccCCC-cCeEEEEEEchhhHhhccCCcccC-CCCCcccCCCchHHHHHHHHHHHHhCHHH
Confidence 1111 1247888886 765545 678889999887776543221100 011234443 345666777777775555
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEE
Q 002941 748 TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIY 827 (863)
Q Consensus 748 l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr 827 (863)
+.+.+.+ .-.+.+++.+.+. +.+...-.... ...+-|..+. .. ...+|..+.+.++.++
T Consensus 293 ~~~~~~~-~~~~a~~l~~~l~----~~~~~~~~~p~--~~~V~f~~~~---------~~-----~~~~~w~l~~~~~~~h 351 (374)
T PLN03032 293 IKRDVQH-CMRNAHYLKDRLT----EAGLTCRLNEL--SSTVVFERPM---------DE-----AFIKKWQLACEGDIAH 351 (374)
T ss_pred HHHHHHH-HHHHHHHHHHHHH----hCCCcEEECCC--ceEEEEcCCC---------cH-----hHhheeeecccCCEEE
Confidence 4333322 2223333322322 22221111111 2223344331 11 1225665655556666
Q ss_pred EecCCCCcHHHHHHHHHHHHH
Q 002941 828 LMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 828 ~~ppl~~t~eeid~~v~~L~~ 848 (863)
+.....++.+.+|++++-|.+
T Consensus 352 i~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 352 VVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred EEECCCCCHHHHHHHHHHHhc
Confidence 666666788999999887754
No 337
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=98.60 E-value=3.8e-05 Score=88.78 Aligned_cols=227 Identities=11% Similarity=0.003 Sum_probs=125.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc------CCeEEEecccccccc---cCC-
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR------KIPVIFDEVFTGFWR---LGV- 671 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~------gilLI~DEV~TGfGR---tG~- 671 (863)
+.|++.+++ ++..|++-=+ ..+.|.+-| +++|.++|++| |+++.+|=+|.|+-. .++
T Consensus 177 ~~L~~~i~~--------~t~lV~~t~g-~t~tG~idp----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~ 243 (431)
T TIGR01788 177 EQVVEAVDE--------NTIGVVCILG-TTYTGEYED----VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDL 243 (431)
T ss_pred HHHHHHHhh--------CCeEEEEEeC-CCCCcccCC----HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCc
Confidence 456666642 2345555554 677888888 99999999999 999999999976421 222
Q ss_pred cchhhhcCCCCcEEEec--cccCCCCCCceeeeccHH--HHHhhhcCCccce-eecccCCCcc-H-HHHHHHHHHHHHhc
Q 002941 672 ETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNA--VFDSFVGDSKLKA-LLHGHSYSAH-A-LGCAAAAKSIKWFK 744 (863)
Q Consensus 672 ~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~--i~~~l~~~~~~~~-~~~~~T~~~~-p-la~AAalAaL~~l~ 744 (863)
.+-+. ....|.++++ |.+.|- ...|+++.+++ +.+.+.....+-. -....|..+. + ...++..++|..+-
T Consensus 244 ~~~~~--~~~~DSis~s~HK~~~~P-~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG 320 (431)
T TIGR01788 244 EWDFR--LPRVKSINVSGHKYGLVY-PGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLG 320 (431)
T ss_pred hhhcC--CCCceEEEECchhccCCC-CCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhc
Confidence 11111 1246889886 765444 56778887754 3343321110000 0000122222 1 12333455555554
Q ss_pred ChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec--ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE--
Q 002941 745 DPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV--ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR-- 820 (863)
Q Consensus 745 ~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr--g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~-- 820 (863)
..++ +++.+....+.+++.+ .+++.|.+.-+. ..-.++.+.+.... . ......++.+.|.++|+.+.
T Consensus 321 ~~G~-~~i~~~~~~la~~l~~----~L~~~~~~el~~~~~~~~iV~Fr~~~~~-~---~~~~~~~l~~~L~~~G~~~~~~ 391 (431)
T TIGR01788 321 REGY-RKIMQNSLDVARYLAE----EIAKLGPFEIISDGSGIPLVAFKLKDDA-D---PGYTLYDLSHRLRERGWIVPAY 391 (431)
T ss_pred HHHH-HHHHHHHHHHHHHHHH----HHHhCCCEEEeeCCCCceEEEEEeCCCC-C---CCcCHHHHHHHHHHCCCcccCC
Confidence 3333 3333444444444433 344455332221 13445566665321 0 01124568889999998642
Q ss_pred --ec---C-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 821 --PL---G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 821 --p~---g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
|. | -.+|+..-..++++.++.+++.|.+++..+
T Consensus 392 ~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 392 TLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred CCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 21 2 356666555678899999999999888765
No 338
>PRK05967 cystathionine beta-lyase; Provisional
Probab=98.59 E-value=1.7e-06 Score=98.56 Aligned_cols=236 Identities=11% Similarity=-0.005 Sum_probs=133.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
..++-...|+++|+.+-+. +..++++||.+|+..++...++ +| ..||+.+..|.++
T Consensus 61 ~gnPt~~~Le~~la~le~~---~~~v~~sSG~aAi~~~l~all~---------~G------------D~Vlv~~~~Y~~~ 116 (395)
T PRK05967 61 RGTPTTDALCKAIDALEGS---AGTILVPSGLAAVTVPFLGFLS---------PG------------DHALIVDSVYYPT 116 (395)
T ss_pred CCChHHHHHHHHHHHHhCC---CCEEEECcHHHHHHHHHHHhcC---------CC------------CEEEEccCCcHHH
Confidence 4577788899999987542 3566777899999988854421 23 5788888888875
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
......... . .+.- +..+.. .+
T Consensus 117 ~~l~~~~l~--~------------~Gi~-----------v~~vd~--------------------------~~------- 138 (395)
T PRK05967 117 RHFCDTMLK--R------------LGVE-----------VEYYDP--------------------------EI------- 138 (395)
T ss_pred HHHHHHHHH--h------------cCeE-----------EEEeCC--------------------------CC-------
Confidence 422111100 0 0000 000000 01
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.+. ++..+|++|.. .+..+ ...-+++|.++|+++|+++|+|+++... ..+.-+.
T Consensus 139 -~e~l~~al~--------~~TklV~lesP-sNP~l----~v~dl~~I~~la~~~g~~vvVD~t~a~p------~~~~pl~ 198 (395)
T PRK05967 139 -GAGIAKLMR--------PNTKVVHTEAP-GSNTF----EMQDIPAIAEAAHRHGAIVMMDNTWATP------LYFRPLD 198 (395)
T ss_pred -HHHHHHhcC--------cCceEEEEECC-CCCCC----cHHHHHHHHHHHHHhCCEEEEECCccCc------eecChhH
Confidence 123445443 24568999964 56544 3344999999999999999999998532 1222233
Q ss_pred CCCcEEE--eccccCC-CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHH
Q 002941 680 CVPDIAC--YGKLLTG-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (863)
Q Consensus 680 v~PDivt--~sKgLgg-G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~ 756 (863)
.-.|+++ ..|.++| |=.-.|+++.+++..+.+.... ...| -..+|..|...+-.|+-|.- ..++-.+++
T Consensus 199 ~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~----~~~G--~~~~p~da~l~~rgl~Tl~l--R~~~~~~na 270 (395)
T PRK05967 199 FGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAH----GTLG--LCAGPDDTYQILRGLRTMGI--RLEHHRKSA 270 (395)
T ss_pred cCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHH----HHcC--CCCCHHHHHHHHcCcccHHH--HHHHHHHHH
Confidence 3478875 5798876 2134566777777655543210 0111 22466665555544443310 123334444
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEcc
Q 002941 757 RILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (863)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~ 793 (863)
..+.+ .+++||.|..| .|.|.|+.+++..
T Consensus 271 ~~lA~--------~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~ 317 (395)
T PRK05967 271 LEIAR--------WLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAA 317 (395)
T ss_pred HHHHH--------HHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcC
Confidence 44433 34555554322 3678899999963
No 339
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.59 E-value=3e-06 Score=98.06 Aligned_cols=152 Identities=15% Similarity=0.063 Sum_probs=97.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
..++...+|+++|+++.+. +.++|++||++|+..++...++ .| ..||+....|++.
T Consensus 61 ~~~p~~~~le~~lA~l~g~---~~av~~sSGt~Al~~al~~ll~---------~G------------d~Vi~~~~~y~~t 116 (433)
T PRK08134 61 ISNPTVAVLEERVAALEGG---VGAIATASGQAALHLAIATLMG---------AG------------SHIVASSALYGGS 116 (433)
T ss_pred CcChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHhC---------CC------------CEEEEeCCccHHH
Confidence 4567889999999999874 4589999999999999875521 12 4688888888764
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
.......- . .++ +....++ ..|
T Consensus 117 ~~~~~~~l--~------------~~G-------------i~v~~vd------------------------~~d------- 138 (433)
T PRK08134 117 HNLLHYTL--R------------RFG-------------IETTFVK------------------------PGD------- 138 (433)
T ss_pred HHHHHHHH--h------------hCC-------------eEEEEEC------------------------CCC-------
Confidence 22111000 0 000 0000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.+. .++.+|++|-+ .+..|.+.+ +++|.++|++||+++|+|.+|. .|..- .-..
T Consensus 139 -~~~l~~~i~--------~~TklV~~e~~-~np~g~v~D----i~~I~~la~~~gi~livD~t~a-~~~~~-----~pl~ 198 (433)
T PRK08134 139 -IDGWRAAIR--------PNTRLLFGETL-GNPGLEVLD----IPTVAAIAHEAGVPLLVDSTFT-TPYLL-----RPFE 198 (433)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CcccCcccC----HHHHHHHHHHcCCEEEEECCCc-ccccC-----Cchh
Confidence 234555553 24567888886 778887777 9999999999999999999984 22221 1123
Q ss_pred CCCcEEEec--cccCC
Q 002941 680 CVPDIACYG--KLLTG 693 (863)
Q Consensus 680 v~PDivt~s--KgLgg 693 (863)
.-.|++++| |.++|
T Consensus 199 ~GaD~vv~S~tK~l~g 214 (433)
T PRK08134 199 HGADLVYHSATKFLGG 214 (433)
T ss_pred cCCCEEEeccccccCC
Confidence 456888774 87764
No 340
>PRK02769 histidine decarboxylase; Provisional
Probab=98.59 E-value=3.6e-05 Score=87.60 Aligned_cols=213 Identities=9% Similarity=0.008 Sum_probs=126.2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC---CeEEEecccccccccCC-----cc
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK---IPVIFDEVFTGFWRLGV-----ET 673 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g---ilLI~DEV~TGfGRtG~-----~~ 673 (863)
+.|++.+++ ....+..|++--+ ..+.|.+-| +++|.++|++|| +++.+|=+|.|+ ..-. .+
T Consensus 148 ~~L~~~i~~-----~~~~t~lvv~t~g-tt~tG~idp----i~~I~~i~~~~g~~~~~lHVDaA~gg~-~~p~~~~~~~~ 216 (380)
T PRK02769 148 DDLISKIKE-----NKNQPPIIFANIG-TTMTGAIDN----IKEIQEILKKIGIDDYYIHADAALSGM-ILPFVNNPPPF 216 (380)
T ss_pred HHHHHHHHh-----CCCCcEEEEEEeC-CCCCcccCC----HHHHHHHHHHhCCCceEEEEEecccce-eecccCccccC
Confidence 456666653 1223455555554 677888887 999999999998 699999999664 3310 12
Q ss_pred hhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCcc--HHHHHHHHHHHHHhcChhhH
Q 002941 674 TADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAH--ALGCAAAAKSIKWFKDPQTN 749 (863)
Q Consensus 674 a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~--pla~AAalAaL~~l~~~~l~ 749 (863)
.+.. ..|.++++ |-+++- .+.|+++.+++..+.+........ ..-.|+.|+ ..+.++..++|+.+...++
T Consensus 217 d~~~---~vDsis~s~HK~~~~P-~g~G~l~~r~~~~~~~~~~~~yl~-~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~- 290 (380)
T PRK02769 217 SFAD---GIDSIAISGHKFIGSP-MPCGIVLAKKKYVERISVDVDYIG-SRDQTISGSRNGHTALLLWAAIRSLGSKGL- 290 (380)
T ss_pred CccC---CCCEEEECCcccCCCC-CCcEEEEEehhhhhhcccCccccC-CCCCCccCCCCcHHHHHHHHHHHHHCHHHH-
Confidence 2211 57999886 766655 688999999887776542211000 011233443 3567777888888765553
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEe
Q 002941 750 HNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLM 829 (863)
Q Consensus 750 ~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ 829 (863)
++..+....+.+++.+++.+ .+ +.-+. .-....+-|..+. ..+ .+|..+.+.++.+++.
T Consensus 291 ~~~~~~~~~la~~l~~~L~~----~g-~~~~~-~p~~~~v~f~~~~----------~~~-----~~~w~l~~~~~~~hi~ 349 (380)
T PRK02769 291 RQRVQHCLDMAQYAVDRLQA----NG-IPAWR-NPNSITVVFPCPS----------ERI-----WKKWHLATSGNQAHII 349 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHh----CC-CEEEc-CCCceEEEEcCCC----------HHH-----HhCeeEcccCCEEEEE
Confidence 33344444555555444322 21 11111 1112233343321 112 1676666666677777
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHH
Q 002941 830 CGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 830 ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
..+.++.|.||.+++-|...+..
T Consensus 350 ~~~~~~~~~~~~f~~dl~~~~~~ 372 (380)
T PRK02769 350 TMPHHNKQQIDSLIDELIFDLKN 372 (380)
T ss_pred ECCCCCHHHHHHHHHHHHHHHhc
Confidence 77788999999999888777653
No 341
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.56 E-value=5.1e-06 Score=95.75 Aligned_cols=152 Identities=13% Similarity=0.061 Sum_probs=96.9
Q ss_pred CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCc
Q 002941 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (863)
Q Consensus 441 ~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t 520 (863)
.++...+|+++|+++.+. ..++.++||..|+..++...++ .| ..||+....|.|..
T Consensus 59 ~nPtv~~lE~~la~leg~---~~av~~~SG~aAi~~al~all~---------~G------------D~VI~~~~~Y~~T~ 114 (432)
T PRK06702 59 GNPTLAAFEQKLAELEGG---VGAVATASGQAAIMLAVLNICS---------SG------------DHLLCSSTVYGGTF 114 (432)
T ss_pred CCcHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHhcC---------CC------------CEEEECCCchHHHH
Confidence 367789999999999874 4688899999999999975521 22 57999988887753
Q ss_pred cccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHH
Q 002941 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (863)
Q Consensus 521 ~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 600 (863)
...-..- . .+|. . +..+. ...|
T Consensus 115 ~~~~~~l--~------------~~Gi--~---------v~~vd-------------------------~~~d-------- 136 (432)
T PRK06702 115 NLFGVSL--R------------KLGI--D---------VTFFN-------------------------PNLT-------- 136 (432)
T ss_pred HHHHHHH--H------------HCCC--E---------EEEEC-------------------------CCCC--------
Confidence 3211100 0 0000 0 00000 0001
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC
Q 002941 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (863)
Q Consensus 601 ~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (863)
.+.+++.+. ++..+|++|.. .+..+.++. +++|.++|++||+++|+|+++. ....++-+..
T Consensus 137 ~~~l~~~I~--------~~Tk~I~~e~p-gnP~~~v~D----i~~I~~iA~~~gi~livD~T~~------tP~~~~pl~~ 197 (432)
T PRK06702 137 ADEIVALAN--------DKTKLVYAESL-GNPAMNVLN----FKEFSDAAKELEVPFIVDNTLA------TPYLCQAFEH 197 (432)
T ss_pred HHHHHHhCC--------cCCeEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEECCCC------chhhCChhhc
Confidence 133555553 24567888875 566665554 9999999999999999999972 3444554444
Q ss_pred CCcEEE--eccccCC
Q 002941 681 VPDIAC--YGKLLTG 693 (863)
Q Consensus 681 ~PDivt--~sKgLgg 693 (863)
-.||++ ++|-++|
T Consensus 198 GADIvv~S~TKy~~G 212 (432)
T PRK06702 198 GANIIVHSTTKYIDG 212 (432)
T ss_pred CCCEEEEccccccCC
Confidence 578875 5797765
No 342
>PRK07671 cystathionine beta-lyase; Provisional
Probab=98.55 E-value=3.7e-06 Score=95.67 Aligned_cols=147 Identities=11% Similarity=0.075 Sum_probs=84.5
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCCCC-
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGV- 695 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLggG~- 695 (863)
++.+|++|-. .+..|.... +++|.++|+++|+++|+||++.. +..+.. .....|+++ ++|.++|.-
T Consensus 134 ~tklV~le~P-~NPtg~~~d----l~~I~~la~~~g~~lvvD~a~~~-~~~~~p-----~~~g~Divv~S~sK~l~G~~~ 202 (377)
T PRK07671 134 NTKAIYVETP-TNPLLKITD----IKKISTIAKEKGLLTIVDNTFMT-PYWQSP-----ISLGADIVLHSATKYLGGHSD 202 (377)
T ss_pred CCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCCc-cccCCh-----hhhCCeEEEecCcccccCCcc
Confidence 4567777754 677776654 99999999999999999999842 122222 223458875 579997520
Q ss_pred CCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 696 IPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 696 ~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
.-.|++++ ++++++.+.... ....-..+|..+..++..++.+.. ..++..++...+.++ ++++
T Consensus 203 ~~~G~~v~~~~~l~~~~~~~~------~~~g~~~~~~~a~l~~~~l~tl~~--R~~~~~~na~~la~~--------L~~~ 266 (377)
T PRK07671 203 VVAGLVVVNSPELAEDLHFVQ------NSTGGILGPQDSWLLLRGLKTLGI--RMEEHETNSRAIAEF--------LNNH 266 (377)
T ss_pred ceeEEEEeCcHHHHHHHHHHH------HhhcCCCCHHHHHHHHcCcChHHH--HHHHHHHHHHHHHHH--------HHcC
Confidence 11233444 567776654210 111123456666655555444321 234444555555543 3344
Q ss_pred CCeeE------------------ecccceEEEEEEc
Q 002941 775 RTVQR------------------VVALGTLCAIELQ 792 (863)
Q Consensus 775 p~v~~------------------vrg~Gl~~~iel~ 792 (863)
|.|.. ..|.|.++.+++.
T Consensus 267 ~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~ 302 (377)
T PRK07671 267 PAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVG 302 (377)
T ss_pred CCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEeC
Confidence 43322 2467889999993
No 343
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=98.55 E-value=7.6e-05 Score=82.48 Aligned_cols=213 Identities=15% Similarity=0.161 Sum_probs=128.9
Q ss_pred CcEE-EEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cch--hhhc---CCCCcEE----E
Q 002941 618 GCIG-ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETT--ADLL---GCVPDIA----C 686 (863)
Q Consensus 618 ~~iA-AvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a--~e~~---gv~PDiv----t 686 (863)
.+|. .+|+.| ++.=|... +++-|..|..++.++++.||+|||+.|- ..++ .|- .+.. ...||.+ .
T Consensus 225 ~kVkGvlitNP--sNPLG~~~-~~e~L~~ll~Fa~~kniHvI~DEIya~s-VF~~~~F~Sv~ev~~~~~~~~~rvHivys 300 (471)
T KOG0256|consen 225 LKVKGVLITNP--SNPLGTTL-SPEELISLLNFASRKNIHVISDEIYAGS-VFDKSEFRSVLEVRKDPHLDPDRVHIVYS 300 (471)
T ss_pred CceeEEEEeCC--CCCCCCcc-CHHHHHHHHHHHhhcceEEEeehhhccc-ccCccCceEHHHHhhccccCCCcEEEEEE
Confidence 3454 566778 78888665 6777999999999999999999999865 3333 111 1111 1256643 6
Q ss_pred eccccC-CCCCCceeeec-cHHHHHhhhcCCccceeecccCCC-ccHHHHHHHHHHHHHhcChhhH-HhHHHHHHHHHHH
Q 002941 687 YGKLLT-GGVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYS-AHALGCAAAAKSIKWFKDPQTN-HNIIPERRILREL 762 (863)
Q Consensus 687 ~sKgLg-gG~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~-~~pla~AAalAaL~~l~~~~l~-~~l~~~~~~l~~~ 762 (863)
+||-+| -| +..|++.. ++++..+...- +.|+ .++....-... +|.++++. .-++++-++++.+
T Consensus 301 lSKD~GlpG-fRvGviYS~ne~VvsaA~km---------ssf~~vSs~tQ~~la~---LLSD~~f~~~yl~en~~Rl~~r 367 (471)
T KOG0256|consen 301 LSKDFGLPG-FRVGVIYSNNEDVVSAATKM---------SSFGLVSSQTQYLLAS---LLSDEEFTREYLRENNKRLRIR 367 (471)
T ss_pred eccccCCCc-eEEEEEEecChHHHHHHHHH---------hhccCCcHHHHHHHHH---HhchHHHHHHHHHHHHHHHHHH
Confidence 799776 45 79999876 56676665431 1222 22333222222 23344433 3345555555543
Q ss_pred HHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEecC-------CEEEEecCCCC
Q 002941 763 WDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPLG-------NVIYLMCGPCS 834 (863)
Q Consensus 763 l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~g-------~~lr~~ppl~~ 834 (863)
-+ .+.+-+++.++.---++.|+++.+++..--.+..+. ....++..+.++ +|.+.|+. +.+|+. =+.+
T Consensus 368 h~-~~~~gLk~lgI~cl~s~AGlF~wvDlr~lL~s~tfe--~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvc-FAn~ 443 (471)
T KOG0256|consen 368 HR-YIVEGLKALGIPCLKSNAGLFCWVDLRKLLTSLTFE--GELELWERILDNVKLNLSPGSSCHCHEPGWFRVC-FANM 443 (471)
T ss_pred HH-HHHhhHHhcCCceeecCCeeEEEEEhHHhcCcCChH--HHHHHHHHHHHhhccccCCCCcceecCCCeEEEE-eccC
Confidence 22 223334443332234688999999998643222232 245678888877 99998853 566654 3356
Q ss_pred cHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~ 851 (863)
.++.++-++++|...+.
T Consensus 444 ~~~t~~~am~Ri~~~~~ 460 (471)
T KOG0256|consen 444 SEETLEVAMRRLKQFLD 460 (471)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 77777778999988876
No 344
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=98.54 E-value=5.4e-05 Score=89.39 Aligned_cols=216 Identities=13% Similarity=0.017 Sum_probs=116.5
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-CCcEEEec--cccCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACYG--KLLTGGV 695 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivt~s--KgLggG~ 695 (863)
.+.+|+.-.. ....|.+-| +++|.++|++||+.|.+|=++.|....-.-+-...-|+ ..|.++++ |.+.+-
T Consensus 265 ~~~~vvataG-tt~tGaiDp----l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P- 338 (522)
T TIGR03799 265 KPLAIVGVAG-TTETGNIDP----LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVP- 338 (522)
T ss_pred CcEEEEEEec-CcCCCCcCC----HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcC-
Confidence 4455554332 335677777 99999999999999999999865421111011112355 68999996 888766
Q ss_pred CCceeeecc-HHHHHhhhcCCccc----e-eecccCCCcc-HHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHH
Q 002941 696 IPLAATLAT-NAVFDSFVGDSKLK----A-LLHGHSYSAH-ALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELI 768 (863)
Q Consensus 696 ~Pigav~~~-~~i~~~l~~~~~~~----~-~~~~~T~~~~-pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~ 768 (863)
+..|+++.+ ++..+.+.....+- . -....++.+. +.......++|+.+...++ +.+.+..-.+.+++.+
T Consensus 339 ~g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~-~~ii~~~~~la~~l~~--- 414 (522)
T TIGR03799 339 MGAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGY-ELLIDQSIEKAKYFAD--- 414 (522)
T ss_pred cccEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHH---
Confidence 677888876 45555544321100 0 0001122222 2222246677887755553 4455555555555433
Q ss_pred HHHhcCCCeeEec-ccceEEEEEEccCCcCC--------------CCchHHHHHHHHHHHHCCcEEEe-c--------C-
Q 002941 769 QQISSHRTVQRVV-ALGTLCAIELQAAGCNA--------------GYGSLYAASLLKKLREDGVYMRP-L--------G- 823 (863)
Q Consensus 769 ~~~~~~p~v~~vr-g~Gl~~~iel~~~~~~~--------------~~~~~~~~~l~~~l~e~GV~~~p-~--------g- 823 (863)
.+.+.|.+.-+. ..=.++.+.+....... .........+.+++.+.|..... . |
T Consensus 415 -~L~~~~~~el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~ 493 (522)
T TIGR03799 415 -LIQQQPDFELVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQ 493 (522)
T ss_pred -HHhhCCCeEEecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCC
Confidence 344555432221 11224444443321100 00122445677788888876542 1 1
Q ss_pred --CEEEEec-CCCCcHHHHHHHHHH
Q 002941 824 --NVIYLMC-GPCSSPEVCSQLLLK 845 (863)
Q Consensus 824 --~~lr~~p-pl~~t~eeid~~v~~ 845 (863)
..+|+.. ++.+|+++|+.+++.
T Consensus 494 ~~~~lR~~~~np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 494 PTVVFRVVLANPLTTHEILQDILDE 518 (522)
T ss_pred CcEEEEEEecCCCCCHHHHHHHHHH
Confidence 2466543 556899999987653
No 345
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=98.52 E-value=1.8e-05 Score=89.05 Aligned_cols=199 Identities=11% Similarity=0.068 Sum_probs=124.3
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCC
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGV 695 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~ 695 (863)
.-|+.+..|.. .|+..+ ++++.+++++|+|=|++ +|- ...-.+.+ |++++| |.+|
T Consensus 132 ~~v~~th~ETs----tGv~~~---------~l~~~~~~l~iVDavss-~g~--~~id~~~~----d~~~~ssqK~lg--- 188 (349)
T TIGR01364 132 AYVHYCANETI----HGVEFR---------ELPDVKNAPLVADMSSN-ILS--RPIDVSKF----GLIYAGAQKNIG--- 188 (349)
T ss_pred CEEEEcCCCCc----ccEecc---------eecccCCCeEEEEcccc-ccC--ccCCHHHc----cEEEEecccccC---
Confidence 34555566664 566543 67888999999999985 432 22223333 477665 9884
Q ss_pred CC-ceeeeccHHHHHhhhcCCc-cce----eecccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHH
Q 002941 696 IP-LAATLATNAVFDSFVGDSK-LKA----LLHGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELI 768 (863)
Q Consensus 696 ~P-igav~~~~~i~~~l~~~~~-~~~----~~~~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~ 768 (863)
-| +|.+.++++..+.+..... ... .....++ +.|-..+.+..++|+++.+++-.+++.++.+.+.+.+.+.
T Consensus 189 P~Glg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~-- 266 (349)
T TIGR01364 189 PAGLTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDT-- 266 (349)
T ss_pred CCceEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--
Confidence 34 8889999999887644211 000 0012233 4455677777889999876522567777777777766544
Q ss_pred HHHhcCCCe-eE-e--ccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHH
Q 002941 769 QQISSHRTV-QR-V--VAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 769 ~~~~~~p~v-~~-v--rg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid 840 (863)
+++.+.+ .. . ..+ ..++++.+... .....+...+.++|+...+.. +.+|+++-..+|+||||
T Consensus 267 --l~~~~gl~~~~~~~~~rs~~v~sf~~~~~--------~~~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid 336 (349)
T TIGR01364 267 --IDNSNGFYRNPVDPRNRSRMNVVFTLGNE--------ELEKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQ 336 (349)
T ss_pred --HHhCCCeeccCCCHHHcCCeEEEEecCCh--------hHhHHHHHHHHHCCCcccCCccccCeeEEECcCCCCHHHHH
Confidence 3444321 11 1 112 24566655432 123566678889999555442 68999988889999999
Q ss_pred HHHHHHHHHHH
Q 002941 841 QLLLKLYQRLE 851 (863)
Q Consensus 841 ~~v~~L~~~l~ 851 (863)
.++++|++.++
T Consensus 337 ~l~~al~~~~~ 347 (349)
T TIGR01364 337 ALVDFMKEFQK 347 (349)
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 346
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.51 E-value=4.7e-05 Score=85.61 Aligned_cols=309 Identities=17% Similarity=0.144 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCC
Q 002941 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (863)
Q Consensus 419 p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~ 498 (863)
.+..+++.+.+....... -+...++++++++.+|. ..+..++||+.|.+.||+.. - -| .|
T Consensus 15 ~~e~~~v~~vl~sg~i~~-----G~~v~~FE~~~ae~~G~---k~ava~~sgT~AL~laL~al-~-----ig--~G---- 74 (374)
T COG0399 15 EEELAAVQEVLKSGWLTG-----GPFVRRFEQAFAEYLGV---KYAVAVSSGTAALHLALLAL-A-----IG--PG---- 74 (374)
T ss_pred hHHHHHHHHHHHcCCeec-----ChHHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHhc-C-----CC--CC----
Confidence 345566666666543321 35678999999999984 68999999999999999965 1 12 12
Q ss_pred CccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcccccc
Q 002941 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578 (863)
Q Consensus 499 ~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~ 578 (863)
..||+-.-+|=.+.-..+..+..+.| .|. -|+.+
T Consensus 75 --------DeVI~ps~TfvATan~i~~~Ga~PVF---------------vDi-------------d~~T~---------- 108 (374)
T COG0399 75 --------DEVIVPSFTFVATANAVLLVGAKPVF---------------VDI-------------DPDTL---------- 108 (374)
T ss_pred --------CEEEecCCchHHHHHHHHHcCCeEEE---------------Eec-------------CCccc----------
Confidence 57888776665543333333222211 110 01100
Q ss_pred ccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEE
Q 002941 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658 (863)
Q Consensus 579 ~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI 658 (863)
+ -| .+.+|+.+.. ..-|.|.+.- . |..+. ++.+++||++||+.+|
T Consensus 109 ---------n--id--------~~~ie~aIt~-------~tKAIipVhl--~---G~~~d----m~~i~~la~~~~l~vI 153 (374)
T COG0399 109 ---------N--ID--------PDLIEAAITP-------RTKAIIPVHL--A---GQPCD----MDAIMALAKRHGLPVI 153 (374)
T ss_pred ---------C--CC--------HHHHHHHccc-------CCeEEEEehh--c---cCCCC----HHHHHHHHHHcCCeEE
Confidence 0 01 2456676642 2334444444 2 43343 8999999999999999
Q ss_pred EecccccccccCCcchhhhcCCCCcEEEec----cccCCCCCCceeeec-cHHHHHhhh---cCCc-------cceeecc
Q 002941 659 FDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLA-TNAVFDSFV---GDSK-------LKALLHG 723 (863)
Q Consensus 659 ~DEV~TGfGRtG~~~a~e~~gv~PDivt~s----KgLggG~~Pigav~~-~~~i~~~l~---~~~~-------~~~~~~~ 723 (863)
-|=+| ++|-+ +--...|-.-|+.+|| |.|+.| =-|++++ ++++++.++ ..+. ......|
T Consensus 154 EDaAq-a~Ga~---y~gk~vGt~Gd~~~fSF~~~K~ittg--EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G 227 (374)
T COG0399 154 EDAAQ-AHGAT---YKGKKVGSFGDIGAFSFHATKNLTTG--EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELG 227 (374)
T ss_pred EEcch-hccCe---ecCcccccccceEEEEecCCCCcccc--CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecc
Confidence 99999 46432 2233445556888775 888743 2345666 466666543 2221 1223355
Q ss_pred cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC-CeeEecccc-----eEEEEEEccCCcC
Q 002941 724 HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR-TVQRVVALG-----TLCAIELQAAGCN 797 (863)
Q Consensus 724 ~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p-~v~~vrg~G-----l~~~iel~~~~~~ 797 (863)
+.|..+-+.+|.+++-|+.+++ +.++-+++.+...+ .+++.+ ........+ -++.+.+...
T Consensus 228 ~N~rm~~iqAAigl~QL~~l~~--~~~~R~~~a~~Y~~--------~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~--- 294 (374)
T COG0399 228 YNYRLTEIQAAIGLAQLERLDE--INERRREIAQIYAE--------ALKGLPGITLPPEPDGAVHAWHLYTILVDEE--- 294 (374)
T ss_pred cccCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--------HhhcCCCccccCCCCCceeeeeeeEEEecCC---
Confidence 6666778888888888887643 22332333333332 233332 111111112 1222333321
Q ss_pred CCCchHHHHHHHHHHHHCCcE----EEec--------------C----------CEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 798 AGYGSLYAASLLKKLREDGVY----MRPL--------------G----------NVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 798 ~~~~~~~~~~l~~~l~e~GV~----~~p~--------------g----------~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
......+...|.++||. .+|. + ..+.+-..+.++++++++++++|.++
T Consensus 295 ----~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~ 370 (374)
T COG0399 295 ----GISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEV 370 (374)
T ss_pred ----CCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 01245678888888554 3331 1 34444333457999999999999988
Q ss_pred HH
Q 002941 850 LE 851 (863)
Q Consensus 850 l~ 851 (863)
+.
T Consensus 371 ~~ 372 (374)
T COG0399 371 LG 372 (374)
T ss_pred hc
Confidence 75
No 347
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=98.51 E-value=3e-06 Score=87.82 Aligned_cols=77 Identities=19% Similarity=0.117 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHH
Q 002941 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (863)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~ 274 (863)
+.+.+.+.++.++| |++||++. |+.......-+++..+ .+|+|+.....+++.+..+++.+
T Consensus 115 ~~l~~~l~~l~~~y-------------D~ViiD~p-----p~~~~~~~~~~~~~~D-~vilV~~~~~~~~~~~~~~~~~l 175 (204)
T TIGR01007 115 SNFKTLIETLRKYF-------------DYIIIDTP-----PIGTVTDAAIIARACD-ASILVTDAGEIKKRDVQKAKEQL 175 (204)
T ss_pred HHHHHHHHHHHhcC-------------CEEEEeCC-----CccccchHHHHHHhCC-eEEEEEECCCCCHHHHHHHHHHH
Confidence 44555666666665 99999995 3322222333444444 78899999999999999999999
Q ss_pred HhCCCcEEEEEEcCCC
Q 002941 275 KLRGYDVVAVVFEDHG 290 (863)
Q Consensus 275 ~~~~~~v~gvi~n~~~ 290 (863)
+..|.++.|+|+|++.
T Consensus 176 ~~~~~~~~gvVlN~~~ 191 (204)
T TIGR01007 176 EQTGSNFLGVVLNKVD 191 (204)
T ss_pred HhCCCCEEEEEEeCcc
Confidence 9999999999999873
No 348
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=98.50 E-value=6.8e-05 Score=85.86 Aligned_cols=232 Identities=14% Similarity=0.044 Sum_probs=127.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchh----hh
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA----DL 677 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~----e~ 677 (863)
+.+++.+.. .+...++.|.+|-. .+.+|-.+.+...+++++++|++||+.||.|=++. ||- + +|-- .+
T Consensus 157 ~~Le~aI~~----~~~~~~~lV~~e~t-~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~-~gN-A-~~I~~re~g~ 228 (450)
T TIGR02618 157 KKLQKLIDE----VGADKIPYICLAVT-VNLAGGQPVSMANMREVRELCEAHGIKVFYDATRC-VEN-A-YFIKEREQGY 228 (450)
T ss_pred HHHHHHhcc----ccCcccCceEEEEe-cccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccch-hhC-h-hhhhcccccc
Confidence 456666642 22334555556544 34443466788899999999999999999998874 310 0 1100 01
Q ss_pred cC-----------CCCcEEEeccccCCCCCCceeeec--cHHHHHhhhcCCccceeecccCCCccHH-HHHHHHHHHHHh
Q 002941 678 LG-----------CVPDIACYGKLLTGGVIPLAATLA--TNAVFDSFVGDSKLKALLHGHSYSAHAL-GCAAAAKSIKWF 743 (863)
Q Consensus 678 ~g-----------v~PDivt~sKgLggG~~Pigav~~--~~~i~~~l~~~~~~~~~~~~~T~~~~pl-a~AAalAaL~~l 743 (863)
.+ -..|. |++|+.-.+..|+|.+++ ++++++..+.... .+...-||++=.. .++|..-+|+..
T Consensus 229 ~~~~i~ei~~e~~~~aD~-~~~S~~Kd~~~~~GG~l~~~d~~l~~k~r~~~~--~~eG~~tyGgla~r~~~ala~gL~e~ 305 (450)
T TIGR02618 229 EDKSIAEILKEMMSYADG-CTMSGKKDCLVNIGGFLCMNDDEMFQSAKELVV--VFEGMPSYGGLAGRDMEAMAIGIREA 305 (450)
T ss_pred cCCCHHHHHHHHhccCcE-EEEeeccCCCCCCceEEEeCCHHHHHHHHHHhh--hcCCccccCchhhhhHHHHHHHHHHh
Confidence 11 13466 555666333368777776 7788777654211 1112235555222 333333345544
Q ss_pred cChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC---cCCCCchHHHHHHHHHHH-HCCcEE
Q 002941 744 KDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG---CNAGYGSLYAASLLKKLR-EDGVYM 819 (863)
Q Consensus 744 ~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~---~~~~~~~~~~~~l~~~l~-e~GV~~ 819 (863)
.+..+.++-..++++|.+.|.+. ..|.+. ...|.++.++...-- ....| -+..++.+|+ +-||-.
T Consensus 306 ~~~~y~~~r~~~a~~La~~L~~~------Gvpv~~--p~ggh~V~vda~~~lph~~~~~~---p~~al~~~ly~~~gir~ 374 (450)
T TIGR02618 306 VDYEYIEHRVKQVRYLGDKLKAA------GVPIVE--PVGGHAVFLDARRFLPHIPQDQF---PAQSLAASIYVETGVRS 374 (450)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHC------CCcccC--CCCcceEEEEhHHhCCCCChhhC---hHHHHHHHHHHHhCccE
Confidence 34455555566677777644221 334433 234566667665421 11122 2344555554 445433
Q ss_pred E----------ecC--------CEEEEecCCC-CcHHHHHHHHHHHHHHHHHHHH
Q 002941 820 R----------PLG--------NVIYLMCGPC-SSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 820 ~----------p~g--------~~lr~~ppl~-~t~eeid~~v~~L~~~l~~l~~ 855 (863)
. |.+ ..+|+..|-- -|.+++|.+.++|....++-+.
T Consensus 375 ~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~ 429 (450)
T TIGR02618 375 MERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHRDD 429 (450)
T ss_pred EeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhhHhh
Confidence 2 111 4567766664 4999999999999887765443
No 349
>PLN02590 probable tyrosine decarboxylase
Probab=98.49 E-value=7e-05 Score=88.52 Aligned_cols=224 Identities=10% Similarity=0.029 Sum_probs=121.1
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-CCcEEEe--ccccCCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGGVI 696 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivt~--sKgLggG~~ 696 (863)
..+|+..-- ....|.+=| +++|.++|++||+.|.+|=++.|+...-..+-.-..|+ ..|-+++ =|.+.-. +
T Consensus 288 P~~VvaTaG-TT~tGaiDp----l~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p-~ 361 (539)
T PLN02590 288 PFFICATVG-TTSSAAVDP----LVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFAN-Q 361 (539)
T ss_pred cEEEEEEeC-CCCCcccCC----HHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcC-c
Confidence 344444332 333455544 99999999999999999999877743322111112355 5788887 4888776 6
Q ss_pred CceeeeccHH--HHHhhhcCCccc-----------eeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 002941 697 PLAATLATNA--VFDSFVGDSKLK-----------ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELW 763 (863)
Q Consensus 697 Pigav~~~~~--i~~~l~~~~~~~-----------~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l 763 (863)
+.|+++++.. +.+.+......- .+....--.+-+........+|+.+=.+++.+.+.+.. .+.+++
T Consensus 362 ~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~-~lA~~~ 440 (539)
T PLN02590 362 TCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHV-NLAKHF 440 (539)
T ss_pred CEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 8888888753 233332111000 00010111123445556667777664455544443332 333333
Q ss_pred HHHHHHHHhcCCCeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE-ec---C-CEEEEec-CCCCcH
Q 002941 764 DLELIQQISSHRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR-PL---G-NVIYLMC-GPCSSP 836 (863)
Q Consensus 764 ~~~l~~~~~~~p~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~-p~---g-~~lr~~p-pl~~t~ 836 (863)
.+.+++.|.+.-+...- .++.+.+...............++.+++.+.|.+.. +. | ..+|+.. +..+++
T Consensus 441 ----~~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~ 516 (539)
T PLN02590 441 ----EDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEE 516 (539)
T ss_pred ----HHHHhcCCCeEEecCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCH
Confidence 33445555432221111 233333332110111112356678888888886554 21 2 4556543 556899
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 837 eeid~~v~~L~~~l~~l~ 854 (863)
++|+.+++.|.+..+++.
T Consensus 517 ~dv~~~~~~i~~~a~~~~ 534 (539)
T PLN02590 517 KHVTEAWQIIQKHASKFT 534 (539)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999988876654
No 350
>PRK06434 cystathionine gamma-lyase; Validated
Probab=98.49 E-value=4.4e-06 Score=95.04 Aligned_cols=147 Identities=13% Similarity=0.176 Sum_probs=89.0
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCC-C
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTG-G 694 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLgg-G 694 (863)
+++.+|++|-+ .+..+..++ +++|.++|+++| +++|-++. - .......+.-.|++++| |-++| |
T Consensus 147 ~~tklv~~e~~-snpt~~v~D----i~~I~~la~~~~--lvVD~t~~-s-----~~~~~pl~~gaDivv~S~tK~i~G~~ 213 (384)
T PRK06434 147 SNYDLIYAESI-TNPTLKVPD----IKNVSSFCHEND--VIVDATFA-S-----PYNQNPLDLGADVVIHSATKYISGHS 213 (384)
T ss_pred CCeeEEEEEcC-CCCCceeec----HHHHHHHHHHcC--eEEECCCC-C-----cccCCchhcCCCEEEeecccccCCCC
Confidence 45678899986 666665554 999999999998 46698862 2 22223344568999886 88865 2
Q ss_pred CCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 695 VIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 695 ~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
=.=.|++++ ++++.+.+... ....-...+|..++.++.-|+.+. ...++-.+++..+. +.++.
T Consensus 214 d~~gG~vv~~~~~~~~~~~~~------~~~~G~~~~~~~A~l~~~gL~tL~--~R~~r~~~~a~~~a--------~~L~~ 277 (384)
T PRK06434 214 DVVMGVAGTNNKSIFNNLVER------RKTLGSNPDPIQAYLALRGLKTLG--LRMEKHNKNGMELA--------RFLRD 277 (384)
T ss_pred CceEEEEecCcHHHHHHHHHH------HHhcCCCCCHHHHHHHHhCCCcHH--HHHHHHHHHHHHHH--------HHHHc
Confidence 122445555 45665554421 011223457887777766666542 12333344444443 44567
Q ss_pred CCCeeEe------------cccceEEEEEEcc
Q 002941 774 HRTVQRV------------VALGTLCAIELQA 793 (863)
Q Consensus 774 ~p~v~~v------------rg~Gl~~~iel~~ 793 (863)
||.|..| +|.|.|+.+++..
T Consensus 278 ~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~ 309 (384)
T PRK06434 278 SKKISNVYYPDTEIGKKVLRGFGGMLSFELRS 309 (384)
T ss_pred CCCccEEECCChHHHHHhcCCCCceEEEEECC
Confidence 7766544 3678899999963
No 351
>PRK05939 hypothetical protein; Provisional
Probab=98.47 E-value=5.1e-06 Score=95.14 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=52.5
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCC-CC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLgg-G~ 695 (863)
++.+|++|.+ .+..|.+.+ +++|.++|++||+++|+|++++.. . .++-.....|++ .++|.++| |
T Consensus 131 ~tklV~vesp-~NptG~v~d----l~~I~~la~~~gi~livD~t~a~~----~--~~~~~~~gaDivv~S~sK~~~g~g- 198 (397)
T PRK05939 131 NTRMVFVETI-ANPGTQVAD----LAGIGALCRERGLLYVVDNTMTSP----W--LFRPKDVGASLVINSLSKYIAGHG- 198 (397)
T ss_pred CCeEEEEECC-CCCCCCHHh----HHHHHHHHHHcCCEEEEECCcccc----c--ccCccccCCEEEEecCeecccCCC-
Confidence 4567888886 888887654 999999999999999999998421 1 122222346777 46899986 4
Q ss_pred CCceeeecc
Q 002941 696 IPLAATLAT 704 (863)
Q Consensus 696 ~Pigav~~~ 704 (863)
.-+|.++..
T Consensus 199 ~~igg~v~~ 207 (397)
T PRK05939 199 NALGGAVTD 207 (397)
T ss_pred CeEEEEEec
Confidence 566666553
No 352
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=98.46 E-value=9.1e-05 Score=84.28 Aligned_cols=232 Identities=11% Similarity=0.033 Sum_probs=123.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc---c-c------cccCC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT---G-F------WRLGV 671 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T---G-f------GRtG~ 671 (863)
+.+++.++. .+++++..+.++-+ .+.+|-.+.|.+.+++++++|++||+.+++|=+-- . | +.+|.
T Consensus 170 ~~le~~I~~----~g~~~i~~v~~tlt-~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~ 244 (467)
T TIGR02617 170 EGLERGIEE----VGPNNVPYIVATIT-CNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNW 244 (467)
T ss_pred HHHHHHHhh----cCCCCceeeeeeEE-EecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCC
Confidence 556666653 24467888888876 66666688899999999999999999999995421 0 0 11111
Q ss_pred c---chhhhcCCCCcEE--EeccccCCCCCCceeeec-cHH-HHHhhhcC-CccceeecccCCCccHHHHHHHHH-HHHH
Q 002941 672 E---TTADLLGCVPDIA--CYGKLLTGGVIPLAATLA-TNA-VFDSFVGD-SKLKALLHGHSYSAHALGCAAAAK-SIKW 742 (863)
Q Consensus 672 ~---~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~-~~~-i~~~l~~~-~~~~~~~~~~T~~~~pla~AAalA-aL~~ 742 (863)
. .+-+.+ -..|.+ +++|+++ .|+|.+++ +++ +.+.+..- ...-.+...-||+|-.----.|+| .|+.
T Consensus 245 si~eI~rE~~-~~aDsvt~slsKglg---ApvGg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e 320 (467)
T TIGR02617 245 SIEQITRETY-KYADMLAMSAKKDAM---VPMGGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYD 320 (467)
T ss_pred CHHHHHHHhh-ccCCEEEEEcCCCCC---CcccceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhh
Confidence 0 011111 235765 5689886 57776654 433 22333220 011122344577653221111222 3443
Q ss_pred hcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccC---CcCCCCchHHHHHHHHHHH-HCCcE
Q 002941 743 FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA---GCNAGYGSLYAASLLKKLR-EDGVY 818 (863)
Q Consensus 743 l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~---~~~~~~~~~~~~~l~~~l~-e~GV~ 818 (863)
.-+++++..=....++|.+.|.+ ...|.+. +-|.+.+ |+...- -....|+ +..++.+|+ +-||-
T Consensus 321 ~~~~~yl~~ri~qv~yl~~~L~~------~Gvpi~~-~Gghav~--iDa~~~lphip~~~fp---a~al~~~ly~~~GiR 388 (467)
T TIGR02617 321 GMNLDWLAYRINQVQYLVNGLEE------IGVVCQQ-AGGHAAF--VDAGKLLPHIPADQFP---AHALACELYKVAGIR 388 (467)
T ss_pred cccHHHHHHHHHHHHHHHHHHHh------CCCcEEe-cCccEEE--EehhhhCCCCChhhCc---HHHHHHHHHHHcCcc
Confidence 33455554444556666664422 2345554 4444433 332221 0111222 344455554 44443
Q ss_pred E-------E---ecC--------CEEEEecCCC-CcHHHHHHHHHHHHHHHHHHH
Q 002941 819 M-------R---PLG--------NVIYLMCGPC-SSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 819 ~-------~---p~g--------~~lr~~ppl~-~t~eeid~~v~~L~~~l~~l~ 854 (863)
. . |.+ ..+|+..|-- -|.+++|.+.+++....++-+
T Consensus 389 ~~e~G~~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~~~ 443 (467)
T TIGR02617 389 AVEIGSLLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAP 443 (467)
T ss_pred eEeecceecccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHhhhh
Confidence 2 1 111 4667766664 499999999999988776543
No 353
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=98.45 E-value=0.0001 Score=78.42 Aligned_cols=212 Identities=18% Similarity=0.171 Sum_probs=122.5
Q ss_pred CCcEEEEEEc-cccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE-Ee--cc-cc
Q 002941 617 SGCIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA-CY--GK-LL 691 (863)
Q Consensus 617 ~~~iAAvIvE-PViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv-t~--sK-gL 691 (863)
.+++++|++. | -+..|.+ ..++-+.+|.+++++||++||+|.++ |.-.-|--|.--..--.++|+ |+ || ||
T Consensus 177 ~e~~g~ic~SRP--tNPTGNV-lTdeE~~kldalA~~~giPliIDnAY-g~PFP~iifsd~~~~w~~NiilC~SLSK~GL 252 (417)
T COG3977 177 GESTGAICVSRP--TNPTGNV-LTDEELAKLDALARQHGIPLIIDNAY-GVPFPGIIFSDATPLWNENIILCMSLSKLGL 252 (417)
T ss_pred ccccceEEecCC--CCCCCCc-ccHHHHHHHHHHhhhcCCcEEEeccc-CCCCCceecccccccCCCCEEEEeehhhcCC
Confidence 4678888876 5 4666744 47788999999999999999999998 442223222211111235654 44 67 66
Q ss_pred CCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHH-HHHHHH---HH
Q 002941 692 TGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRIL-RELWDL---EL 767 (863)
Q Consensus 692 ggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l-~~~l~~---~l 767 (863)
-| ...|.++++++++.++.+-.. ..-.+.+.| +.|.+.. .++..++..-..+..+-+ +.++.. .+
T Consensus 253 PG--~R~GIiIane~viqaitnmn~-iisLap~~~-----G~Aia~~---mie~gdl~rlseqVIrPFY~~~~q~~~~~l 321 (417)
T COG3977 253 PG--SRCGIIIANEKVIQAITNMNG-IISLAPGRM-----GPAIAAE---MIESGDLLRLSEQVIRPFYRNRVQTTIAIL 321 (417)
T ss_pred CC--cceeEEEccHHHHHHHHhccc-eeeecCCCc-----cHHHHHH---HhhcchHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 55 688999999999999875211 001111111 2222222 222333221111111111 111111 11
Q ss_pred HHHHhcCCCeeEecccceEEE-EEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------------CCEEEEecCC
Q 002941 768 IQQISSHRTVQRVVALGTLCA-IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------------GNVIYLMCGP 832 (863)
Q Consensus 768 ~~~~~~~p~v~~vrg~Gl~~~-iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------------g~~lr~~ppl 832 (863)
.+.+.+.++. --++.|.++. +-|.+-. -....+.++|..+||++.|+ +.++|+ ++
T Consensus 322 ~~~lp~~~~~-iHkpEGAIFlWLWf~dLP-------Itt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rm--n~ 391 (417)
T COG3977 322 RRYLPEYRCL-IHKPEGAIFLWLWFKDLP-------ITTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRM--NY 391 (417)
T ss_pred HHhcCcccee-eecCCcceeehhhhccCC-------CCHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEEE--ec
Confidence 2223334432 1256776555 4444322 23678999999999999873 267776 67
Q ss_pred CCcHHHHHHHHHHHHHHHHHH
Q 002941 833 CSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 833 ~~t~eeid~~v~~L~~~l~~l 853 (863)
+-+++.|+..+.+|.+.++++
T Consensus 392 ~~~~~~ie~Gva~lae~ve~~ 412 (417)
T COG3977 392 VPEPEKIEKGVAILAEEVERA 412 (417)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 788999999999998877654
No 354
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=98.40 E-value=2.9e-05 Score=87.83 Aligned_cols=198 Identities=10% Similarity=0.031 Sum_probs=122.7
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCC
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGV 695 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~ 695 (863)
.-|+.+-.|.. .|+..++ ++++ ||+++|+|=|++ +| +...-.+.+ |++++| |.+|
T Consensus 143 ~~V~~th~eTs----tGv~~~~---i~~i------~g~l~vVDavss-~g--~~~idv~~~----d~~~~ssqK~lg--- 199 (360)
T PRK05355 143 AYVHYTSNETI----DGTEFHE---LPDT------GDVPLVADMSSD-IL--SRPIDVSKF----GLIYAGAQKNIG--- 199 (360)
T ss_pred CEEEEccCCCc----ceEecCc---cccc------CCCcEEEEcCcc-cc--CccCCHHHc----cEEEEecccccc---
Confidence 34555555653 5666532 3333 899999999985 43 222333333 577775 9884
Q ss_pred CC-ceeeeccHHHHHhhhcC-Ccc---ce-eecccC-CCccHHHHHHHHHHHHHhcCh-hhHHhHHHHHHHHHHHHHHHH
Q 002941 696 IP-LAATLATNAVFDSFVGD-SKL---KA-LLHGHS-YSAHALGCAAAAKSIKWFKDP-QTNHNIIPERRILRELWDLEL 767 (863)
Q Consensus 696 ~P-igav~~~~~i~~~l~~~-~~~---~~-~~~~~T-~~~~pla~AAalAaL~~l~~~-~l~~~l~~~~~~l~~~l~~~l 767 (863)
-| +|.+.++++..+.+... ... .. .....+ ++.|-..+.+..++|+++.++ + .+++.++.+.+.+.+.+.
T Consensus 200 P~Glg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG-~e~i~~r~~~l~~~l~~~- 277 (360)
T PRK05355 200 PAGLTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGG-VAAMEKRNQEKAALLYDA- 277 (360)
T ss_pred CCceEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHHH-
Confidence 34 88899999998876541 100 00 001112 344566777788899998765 4 466677777777665444
Q ss_pred HHHHhcCCCeeEe----cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHH
Q 002941 768 IQQISSHRTVQRV----VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 768 ~~~~~~~p~v~~v----rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid 840 (863)
+++.+.+... ...+..+.+.+... .....+...+.++|+++.+. .+.+|+++-..+|.||||
T Consensus 278 ---l~~~~~~~~~~~~~~rs~~v~sf~~~~~--------~~~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~ 346 (360)
T PRK05355 278 ---IDSSDFYRNPVAPEDRSRMNVPFTLADE--------ELDKKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQ 346 (360)
T ss_pred ---HHhCCCcccCCChhhcCCcEEEEEcCCh--------HHHHHHHHHHHHCCCcccCCCCccCcEEEECCCCCCHHHHH
Confidence 3344432110 11234566655432 12356667888999998543 267999988889999999
Q ss_pred HHHHHHHHHHH
Q 002941 841 QLLLKLYQRLE 851 (863)
Q Consensus 841 ~~v~~L~~~l~ 851 (863)
.++++|++.+.
T Consensus 347 ~l~~~l~~~~~ 357 (360)
T PRK05355 347 ALVDFMKEFER 357 (360)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 355
>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]
Probab=98.39 E-value=4.5e-05 Score=79.51 Aligned_cols=201 Identities=17% Similarity=0.182 Sum_probs=123.1
Q ss_pred cEE-EEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-C
Q 002941 619 CIG-ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-G 693 (863)
Q Consensus 619 ~iA-AvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-g 693 (863)
.+- .|++.| .+..|-..- .+-+.++-+.-+ +.++++||++-.| .|-+.......-.|+++ ||||+.| .
T Consensus 160 ~iK~~F~tSP--gNPtg~~ik-~~di~KiLe~p~--nglVVvDEAYidF--sg~~S~~~lV~kYpNLivlqTlSKsfGLA 232 (375)
T KOG0633|consen 160 KIKCIFLTSP--GNPTGSIIK-EDDILKILEMPD--NGLVVVDEAYIDF--SGVESRMKLVKKYPNLIVLQTLSKSFGLA 232 (375)
T ss_pred cceEEEEcCC--CCCCccccc-HHHHHHHHhCCC--CcEEEEeeeeEee--ccccccchHhHhCCceeehhhhhhhcCcc
Confidence 444 455567 577776664 344444545443 7899999999777 45444444444568877 6799877 5
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +.+|....+.++++.+... -..|..+-++..+|+++|.-- ...-.+.++...-+=+. +|...+..
T Consensus 233 G-iRvG~~~~~~~ia~iln~~--------KaPYNiS~~~s~~AL~Als~~-n~kkme~~rdaiv~er~----RL~keLt~ 298 (375)
T KOG0633|consen 233 G-IRVGYGAFPLSIAEILNRA--------KAPYNISVAGSVAALAALSDS-NGKKMEDVRDAIVRERE----RLFKELTE 298 (375)
T ss_pred e-eEeecccccHHHHHHHHhc--------cCCccccchhHHHHHHhcCcc-cchHHHHHHHHHHHHHH----HHHHHhhc
Confidence 6 8999999999999988742 234555556666666666511 11112222222211122 34455666
Q ss_pred CCCeeEecc--cceEEEEEEccCCcCCCCchHHHHHH-HHHHHHCCcEEEecC------CEEEEecCCCCcHHHHHHHHH
Q 002941 774 HRTVQRVVA--LGTLCAIELQAAGCNAGYGSLYAASL-LKKLREDGVYMRPLG------NVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 774 ~p~v~~vrg--~Gl~~~iel~~~~~~~~~~~~~~~~l-~~~l~e~GV~~~p~g------~~lr~~ppl~~t~eeid~~v~ 844 (863)
.|.+.+..| ...|+-+++...+ ...+..+ .+.+-..||.++..| +.+|++ .-|+|+-+.+++
T Consensus 299 v~~~~~~~gg~daNFiLi~v~~~~------n~~akkly~q~at~~gVvVRfrgse~~c~G~lRit---vGt~EentvL~k 369 (375)
T KOG0633|consen 299 VPFLNDYPGGSDANFILIEVTGGD------NGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRIT---VGTPEENTVLMK 369 (375)
T ss_pred CccccCCCCcccccEEEEEEcCCC------cHHHHHHHHHHHHhcceEEEEcCCccccceeEEEE---cCCcccchHHHH
Confidence 666655433 3357777776432 1234444 444557899998654 678886 678888888888
Q ss_pred HHHHH
Q 002941 845 KLYQR 849 (863)
Q Consensus 845 ~L~~~ 849 (863)
.|++.
T Consensus 370 ~~K~~ 374 (375)
T KOG0633|consen 370 CLKQF 374 (375)
T ss_pred HHHhh
Confidence 88764
No 356
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=98.37 E-value=2.9e-05 Score=87.25 Aligned_cols=347 Identities=15% Similarity=0.077 Sum_probs=179.6
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc-ccCCCCC--ChHHHHHH-HHHHhhcCCCCCCeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENV--YEPALECA-ELLLQGVGKGWASRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~-~~~~~~~--~~~~~eLa-e~L~~~~p~~~~~~v~f~~SGSeAvE 475 (863)
-|||..+ .|= .+|+|.+|+...+..+-. .....+. ...+.+.| +.++.+.+.+ -..+.|+++++|+|-
T Consensus 45 vyld~~a------t~p-~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd-~~dIiFts~ATEs~N 116 (428)
T KOG1549|consen 45 VYLDNQA------TGP-MDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINAD-PSDIVFTSGATESNN 116 (428)
T ss_pred EEEecCc------CCC-CCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCC-CCcEEEeCCchHHHH
Confidence 6888543 343 689999999987766432 2111122 22224444 4455566644 245999999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.+++-.-+.+. .+ . ++.||.+... |.+...+.-..- ..+ +
T Consensus 117 lvl~~v~~~~~--~~----~----------~k~iitl~~e-H~~v~~s~~~l~--------------~~g--~------- 156 (428)
T KOG1549|consen 117 LVLKGVARFFG--DK----T----------KKHIITLQTE-HPCVLDSCRALQ--------------EEG--L------- 156 (428)
T ss_pred HHHHHhhcccc--cc----c----------cceEEEeccc-CcchhHHHHHHH--------------hcC--e-------
Confidence 99986633221 01 0 1356666554 444333222110 001 0
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
.+..+|+++.+ ..| .+.+++.++ .++.+|.+.-| .++-|+
T Consensus 157 --~Vt~lpv~~~~---------------------~~d--------~~~~~~~i~--------~~T~lv~I~~V-nn~~gv 196 (428)
T KOG1549|consen 157 --EVTYLPVEDSG---------------------LVD--------ISKLREAIR--------SKTRLVSIMHV-NNEIGV 196 (428)
T ss_pred --EEEEeccCccc---------------------ccc--------HHHHHHhcC--------CCceEEEEEec-ccCccc
Confidence 12234443211 001 234455553 36788999998 899999
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHH----
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFD---- 709 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~---- 709 (863)
..| +++|..+|+++|+.+++|-+| +.|.. -.+.-.+.+|.++++ |.+|- =++|+..++++.-.
T Consensus 197 ~~P----v~EI~~icr~~~v~v~~DaAQ-avG~i----~vDV~eln~D~~s~s~HK~ygp--~~iGaLYvr~~~~~~~~~ 265 (428)
T KOG1549|consen 197 LQP----VKEIVKICREEGVQVHVDAAQ-AVGKI----PVDVQELNADFLSISAHKIYGP--PGIGALYVRRKRPRLRVE 265 (428)
T ss_pred ccc----HHHHHHHhCcCCcEEEeehhh-hcCCc----cccHHHcCchheeeecccccCC--CcceEEEEccCCCccccc
Confidence 998 999999999999999999999 56432 223334578988876 88774 23888888862111
Q ss_pred -hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe------eEec
Q 002941 710 -SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDLELIQQISSHRTV------QRVV 781 (863)
Q Consensus 710 -~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v------~~vr 781 (863)
.+.++...+.+..+. .++..+..--++.+++.. ....+. ...++...+... .+...+.+ ..-.
T Consensus 266 p~~~GGgq~r~~rsGT---~~~~~~~~~gsA~e~~~~~~~~~~~---~~~~~~~~ll~~---i~~~~~~~~~~G~~~~~~ 336 (428)
T KOG1549|consen 266 PPLSGGGQERGLRSGT---VATPLAVGLGSAAEFVNKEMAYDEA---IIKRLSEKLLMG---IGQSLPEVTLNGSGKSRY 336 (428)
T ss_pred CcccCCccccccccCC---cCchhhhhhHHHHHHHHhhcchhHH---HHHHHHHHHHHH---HhhhCchhhccCCccccc
Confidence 111112222222221 223333334444555422 211111 112233322222 22222221 0111
Q ss_pred ccceEEEEEEccCC-----cC----CCCch-HHH-HHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 782 ALGTLCAIELQAAG-----CN----AGYGS-LYA-ASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 782 g~Gl~~~iel~~~~-----~~----~~~~~-~~~-~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.-...+++..+... .+ ..+.. ... .+....++..|+-.......+||..-.-++++|++.+++.+.+.+
T Consensus 337 ~~~~~~~~~~~~g~~~~~~~~~~~l~s~~a~~~~~~epsy~l~~~G~~~~~~~~~iRis~G~y~t~~di~~~~~~i~~~v 416 (428)
T KOG1549|consen 337 PGLVSLSFPYVEGESLLMDLKDVALSSGSACTSASLEPSYVLRAIGVDEDLAHSSIRISIGRYTTEEDIDYLVDAIKKLV 416 (428)
T ss_pred ccceeeecccccCcchhhhhhhhhhcccchhhcCCCCcchhhhhcCcchhhhcceeEEeeeeeCcHHHHHHHHHHHHHHH
Confidence 11223333311110 00 00000 000 012234555666444445778888777789999999999998877
Q ss_pred HHHH
Q 002941 851 EEFD 854 (863)
Q Consensus 851 ~~l~ 854 (863)
+.+.
T Consensus 417 ~~~~ 420 (428)
T KOG1549|consen 417 SLLR 420 (428)
T ss_pred Hhcc
Confidence 6544
No 357
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=98.36 E-value=3.5e-05 Score=80.76 Aligned_cols=308 Identities=14% Similarity=0.095 Sum_probs=172.5
Q ss_pred CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCc
Q 002941 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (863)
Q Consensus 441 ~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t 520 (863)
..+|..++-+.|++++| .+.+-++++.-||-.+++-.. . + +...++.++.-|=+|
T Consensus 59 ~kPpI~~F~~dlaeFlg---~D~~R~t~GARe~KfavMhal-~----------~-----------~gd~vV~D~~aHYtt 113 (382)
T COG1103 59 TKPPIKDFLEDLAEFLG---MDEVRVTAGAREAKFAVMHAL-C----------K-----------EGDWVVVDSLAHYTT 113 (382)
T ss_pred cCCcHHHHHHHHHHHhC---CceeeecccchhhHHHHHHHh-c----------c-----------CCCEEEEcCcchHHH
Confidence 45788899999999998 578999998888876555432 1 1 256899999999887
Q ss_pred cccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHH
Q 002941 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (863)
Q Consensus 521 ~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 600 (863)
.-+.-..|...+ ..|. -.+|... . + .+.|
T Consensus 114 yvAAEragl~v~----------------eVp~---------tg~Pey~--------------------i--~----~e~y 142 (382)
T COG1103 114 YVAAERAGLNVA----------------EVPN---------TGYPEYK--------------------I--T----PEGY 142 (382)
T ss_pred HHHHHhcCCeEE----------------ecCC---------CCCCceE--------------------e--c----HHHH
Confidence 766544331111 0111 0112110 0 0 1223
Q ss_pred HHHHHHHHhcCCCCCCCCcEE-EEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 601 SSYISQNLLQNPGLKVSGCIG-ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 601 ~~~le~~l~~~i~~~~~~~iA-AvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.-++ +++.++ |++.-| .|.-|.+.. -+++.++|+++|++|++.=++| .||.- ...-.
T Consensus 143 ~~viee~~~~-----~g~~~~lallTh~--Dg~YGNl~D----akkva~ic~e~gvPlllN~AYt-~Grmp----vs~ke 206 (382)
T COG1103 143 AEVIEEVKDE-----GGDPPALALLTHV--DGEYGNLAD----AKKVAKICREYGVPLLLNCAYT-VGRMP----VSGKE 206 (382)
T ss_pred HHHHHHHHhc-----cCCCceEEEEecc--CCCcCCchh----hHHHHHHHHHcCCceEeeccee-ecccc----ccccc
Confidence 3445544432 334455 555555 678786654 6889999999999999998886 66652 12223
Q ss_pred CCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCC-cc----ceeecccCCCccHHHHHHHHHHHHHhcC--hhhHH
Q 002941 680 CVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDS-KL----KALLHGHSYSAHALGCAAAAKSIKWFKD--PQTNH 750 (863)
Q Consensus 680 v~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~-~~----~~~~~~~T~~~~pla~AAalAaL~~l~~--~~l~~ 750 (863)
+.+|.++=| |+|+.. -|+|...++++..+.+...+ +. ..-+.+-|-.|-|+.. .+|++-...+ ..|-+
T Consensus 207 ~g~DFiVgSGHKsmAAs-~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivT--lmASfP~V~eRVkrWde 283 (382)
T COG1103 207 IGADFIVGSGHKSMAAS-APIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVT--LMASFPHVVERVKRWDE 283 (382)
T ss_pred cCCCEEEecCccchhcc-CCeeEEeehhHHHHHHHhhcccccccceeeeecccccCchHHH--HHhcCHHHHHHHHHHHH
Confidence 678988776 899877 69999999999998764322 10 1123455555655532 2222222211 11222
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHhcCCCeeEecccceEEEEEEccCC--cCCCCchHHHHHHHHHHHHCCcEEEecCCEEE
Q 002941 751 NIIPERRILRELWDLEL-IQQISSHRTVQRVVALGTLCAIELQAAG--CNAGYGSLYAASLLKKLREDGVYMRPLGNVIY 827 (863)
Q Consensus 751 ~l~~~~~~l~~~l~~~l-~~~~~~~p~v~~vrg~Gl~~~iel~~~~--~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr 827 (863)
. .++.+++.+.+.+.. ...+...|. ..- ++.++...-. .+. .......+..+|.++||.-...|..-+
T Consensus 284 E-v~kaR~fv~elEkigg~~qlG~rPk-----~Hd-Lm~Fetp~f~eIakk--~~r~gyFlY~ELK~RgI~GI~~G~Tk~ 354 (382)
T COG1103 284 E-VEKARWFVAELEKIGGVKQLGERPK-----NHD-LMKFETPVFHEIAKK--HKRKGYFLYEELKKRGIHGIQPGQTKY 354 (382)
T ss_pred H-HHHHHHHHHHHHHhhhHHHhCCCCc-----ccc-eeeecCchHHHHHHh--CcCCceeeHHHHHhcCccccccCceeE
Confidence 2 233444444333211 111111111 111 2222221100 000 000122356778888887655553333
Q ss_pred Eec-CCCCcHHHHHHHHHHHHHHHHH
Q 002941 828 LMC-GPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 828 ~~p-pl~~t~eeid~~v~~L~~~l~~ 852 (863)
|.. -+-.+.|+++..++++++.+++
T Consensus 355 ~K~svyGl~~Eqve~V~~afkeI~ek 380 (382)
T COG1103 355 FKLSVYGLSWEQVEYVVDAFKEIAEK 380 (382)
T ss_pred EEEEeecCCHHHHHHHHHHHHHHHHh
Confidence 332 4568999999999999988764
No 358
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=98.34 E-value=1.2e-05 Score=85.56 Aligned_cols=102 Identities=16% Similarity=0.204 Sum_probs=71.1
Q ss_pred ChhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHH
Q 002941 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (863)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (863)
..+.+.+.+..+.+.| |++||++.+|+.. .+.......+ .||+|+.....++..++..++
T Consensus 94 ~~~~l~~~l~~l~~~y-------------D~VIiD~p~~~~~------~~~~~l~~ad-~vliv~~~~~~s~~~~~~~~~ 153 (251)
T TIGR01969 94 DPDKLEDVLKEIIDDT-------------DFLLIDAPAGLER------DAVTALAAAD-ELLLVVNPEISSITDALKTKI 153 (251)
T ss_pred CHHHHHHHHHHHHhhC-------------CEEEEeCCCccCH------HHHHHHHhCC-eEEEEECCCCchHHHHHHHHH
Confidence 3456666676666665 9999999776531 2222222222 488999999889988888888
Q ss_pred HHHhCCCcEEEEEEcCCCCCC----HHHHHHhhcCCCCeee-cCCCCCC
Q 002941 273 SLKLRGYDVVAVVFEDHGLVN----EVPLMSYLRNRVPVLV-LPPLPQD 316 (863)
Q Consensus 273 ~~~~~~~~v~gvi~n~~~~~~----~~~~~~~~~~~~pvl~-~p~~~~~ 316 (863)
.++..+.++.++|+|++...+ ...+++. .++|+++ ||+.+..
T Consensus 154 ~~~~~~~~~~~vv~N~~~~~~~~~~~~~l~~~--~~~~~l~~Ip~~~~~ 200 (251)
T TIGR01969 154 VAEKLGTAILGVVLNRVTRDKTELGREEIETI--LEVPVLGVVPEDPEV 200 (251)
T ss_pred HHHhcCCceEEEEEECCCchhhhhHHHHHHHh--hCCcEEEEecCCHhH
Confidence 887778899999999985432 2344444 3789998 9887654
No 359
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=98.33 E-value=1.7e-05 Score=79.77 Aligned_cols=88 Identities=15% Similarity=0.070 Sum_probs=61.4
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhh-hcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCC-------
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYR-PFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV------- 292 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~-~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~------- 292 (863)
+|++||.+..++. .....+++ ..---+|+|+....-++..+...++.+++.+.++.|+|+|+....
T Consensus 68 yD~VIiD~pp~~~------~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~~~~~~~~ 141 (169)
T cd02037 68 LDYLVIDMPPGTG------DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGKK 141 (169)
T ss_pred CCEEEEeCCCCCc------HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcccCCCCCCc
Confidence 5999999966532 11223332 223457888888889999999999999999999999999987321
Q ss_pred ----CHHHHHHhhc-CCCCeee-cCCCC
Q 002941 293 ----NEVPLMSYLR-NRVPVLV-LPPLP 314 (863)
Q Consensus 293 ----~~~~~~~~~~-~~~pvl~-~p~~~ 314 (863)
....+++..+ -+.|+++ ||+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~ip~~~ 169 (169)
T cd02037 142 IYIFGKGGGEKLAEELGVPLLGKIPLDP 169 (169)
T ss_pred ccccCCccHHHHHHHcCCCEEEeccCCC
Confidence 1123333322 3799999 99864
No 360
>PRK15029 arginine decarboxylase; Provisional
Probab=98.31 E-value=8.2e-05 Score=90.65 Aligned_cols=216 Identities=15% Similarity=0.136 Sum_probs=115.2
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchh-hhc-----C-CCCc-EEEec--c
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLL-----G-CVPD-IACYG--K 689 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~-e~~-----g-v~PD-ivt~s--K 689 (863)
.++||+-|. -.|+..- ++.|.++|+++|++|++||+|.+.-+....+.- ... . .-|| ++|-| |
T Consensus 314 ~avvlt~PT---Y~Gv~~d----i~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHK 386 (755)
T PRK15029 314 SYCVVTNCT---YDGVCYN----AKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHK 386 (755)
T ss_pred eEEEEECCC---CcceeeC----HHHHHHHHHhcCCeEEEECccccccccCccccccccccccccccCCCceEEEEchhh
Confidence 377888885 3566655 899999999999999999999765555554431 111 1 3478 66666 7
Q ss_pred ccCCCCCCceeee-ccHH--HH--HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC---hhhHHhHHHHHHHHHH
Q 002941 690 LLTGGVIPLAATL-ATNA--VF--DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD---PQTNHNIIPERRILRE 761 (863)
Q Consensus 690 gLggG~~Pigav~-~~~~--i~--~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~---~~l~~~l~~~~~~l~~ 761 (863)
-|++ +-.++++ .+.+ .+ +.+.. .+....|.+.+=+-+|..-.+..+++. .++.+++.+....+++
T Consensus 387 tL~a--lTQaS~LHv~~~~~~id~~r~~~-----~l~~~qSTSPSY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~ 459 (755)
T PRK15029 387 LLNA--LSQASYIHVREGRGAINFSRFNQ-----AYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQ 459 (755)
T ss_pred cccc--hhhhhhheeCCCccccCHHHHHH-----HHHHHcCCCcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 6654 2333332 2211 11 12221 122334556665666666566666653 2344555555666665
Q ss_pred HHHHHHHHHHh-cC--------C-Cee------------------------Eeccc-----c-------------eEEEE
Q 002941 762 LWDLELIQQIS-SH--------R-TVQ------------------------RVVAL-----G-------------TLCAI 789 (863)
Q Consensus 762 ~l~~~l~~~~~-~~--------p-~v~------------------------~vrg~-----G-------------l~~~i 789 (863)
.+.+. ...+. +. | .|. .+-+. | +=+.|
T Consensus 460 ~l~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~lDp~Klti 538 (755)
T PRK15029 460 AMARL-YKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDLPDNWSMLDPIKVSI 538 (755)
T ss_pred HHHhc-cccccccccccccccCccccccccccccccccccchhhhccccceeeecccccccCcccccccccccCCceEEE
Confidence 44221 00000 00 0 000 00000 0 00001
Q ss_pred EEccCCcCCCC---chHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGY---GSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 790 el~~~~~~~~~---~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
....-+ ...+ ..--+..+.+.|.++||.+--.+ +.+.++.++..|+++++.++++|.+.-+
T Consensus 539 ~~~~~g-~sG~~~~~gip~~~l~~~L~~~gI~~E~~~~~~vL~l~s~g~t~~~~~~L~~aL~~~~~ 603 (755)
T PRK15029 539 LAPGMG-EDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKR 603 (755)
T ss_pred EcCCCC-CCCcccccCCcHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 110000 0000 00114468888888999997654 6677777889999999999998876643
No 361
>PLN02263 serine decarboxylase
Probab=98.25 E-value=0.00086 Score=77.75 Aligned_cols=215 Identities=8% Similarity=-0.003 Sum_probs=115.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCC-----eEEEecccccccc----cCCc
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI-----PVIFDEVFTGFWR----LGVE 672 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gi-----lLI~DEV~TGfGR----tG~~ 672 (863)
+.|++.+++ ......+|+.--- ....|.+=| +++|.++|++||+ .|-+|=++.|+-- .-..
T Consensus 216 ~aL~~aI~~-----d~~~P~iVvataG-TT~~GAiDp----i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~ 285 (470)
T PLN02263 216 ADFKAKLLA-----NKDKPAIINVNIG-TTVKGAVDD----LDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPK 285 (470)
T ss_pred HHHHHHHHh-----CCCCcEEEEEEec-CCCCcCCCC----HHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccc
Confidence 456666653 1223444444321 234455544 9999999999997 9999999877621 1011
Q ss_pred chhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCc--cHHHHHHHHHHHHHhcChhh
Q 002941 673 TTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSA--HALGCAAAAKSIKWFKDPQT 748 (863)
Q Consensus 673 ~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~--~pla~AAalAaL~~l~~~~l 748 (863)
|.+ -...|-+++. |.++.- +|-|+++.+++..+.+.....+-.. .-.|..+ +-...+...++|+.+-.+++
T Consensus 286 ~df---~~~vDSIsvD~HK~l~~P-~~cgvll~R~~~~~~~~~~~~Yl~~-~d~ti~gSR~g~~al~lW~~L~~~G~~G~ 360 (470)
T PLN02263 286 VTF---KKPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLAS-RDATIMGSRNGHAPIFLWYTLNRKGYRGF 360 (470)
T ss_pred cCC---CcCccEEEECCccccCCC-cCEEEEEEehhhHhhhccChHhhCC-CCCCcCCCCCcHHHHHHHHHHHHhCHHHH
Confidence 111 1236777775 888777 6888999998766555322110000 0012222 21234556667776644554
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEE
Q 002941 749 NHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYL 828 (863)
Q Consensus 749 ~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~ 828 (863)
.+.+.+ .-.+.+++.+. +.+.+...-.....+.+.+. .+. .....+|..+...++.+.+
T Consensus 361 ~~~i~~-~~~~A~~l~~~----l~~~g~~~~~~p~s~~V~f~--~p~--------------~~~~~~gW~L~~~~~~~Hi 419 (470)
T PLN02263 361 QKEVQK-CLRNAHYLKDR----LREAGISAMLNELSSTVVFE--RPK--------------DEEFVRRWQLACQGNIAHV 419 (470)
T ss_pred HHHHHH-HHHHHHHHHHH----HHhCCCeEEeCCCceEEEEe--cCc--------------hHHhhcceEEccCCCcEEE
Confidence 444332 22333333333 23333211122233333333 221 0123467766666666666
Q ss_pred ecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 829 MCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 829 ~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.....++.+.+|++++-|.+....
T Consensus 420 vvmphv~~~~id~fi~DL~~~~~~ 443 (470)
T PLN02263 420 VVMPSVTIEKLDYFLKELVEKRST 443 (470)
T ss_pred EEcCCCCHHHHHHHHHHHHHHHhh
Confidence 655567889999999999887764
No 362
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=98.25 E-value=7.8e-05 Score=82.99 Aligned_cols=239 Identities=8% Similarity=0.070 Sum_probs=144.6
Q ss_pred HHHHHHHhcCCCC-CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC---------
Q 002941 602 SYISQNLLQNPGL-KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--------- 671 (863)
Q Consensus 602 ~~le~~l~~~i~~-~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--------- 671 (863)
+.|++.++..-.. .+..+--.+-+=|.-|+..|..+ +.+--++|.+|++|||+|+|-||++ .|=..+.
T Consensus 185 E~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tl-s~errk~iy~LArKyDfLIVeDdpY-y~Lq~~~y~~~~~~~~ 262 (472)
T KOG0634|consen 185 ESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTL-SLERRKKIYQLARKYDFLIVEDDPY-YFLQMNTYNPSLELES 262 (472)
T ss_pred HHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCcc-CHHHHHHHHHHHHHcCEEEEecCcc-ceeeccccCCCccccC
Confidence 4566666542111 11112333444465588889665 6777899999999999999999998 4434442
Q ss_pred -cchhhhc-----------CCCCcEE---EeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHH
Q 002941 672 -ETTADLL-----------GCVPDIA---CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAA 736 (863)
Q Consensus 672 -~~a~e~~-----------gv~PDiv---t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAa 736 (863)
.+..+.+ +..-.++ +|||-++-| +.+|.+.+++.+++.+.... ...|-+.+..+....
T Consensus 263 p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPG-lRlG~it~~~~~l~ril~~a------e~~t~~pSg~sq~iv 335 (472)
T KOG0634|consen 263 PAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPG-LRLGWITGNSLFLKRILDLA------EVATSGPSGFSQGIV 335 (472)
T ss_pred ccccHHHHHHhhcCCcccccccccEEeccchhhhhcCc-ceeEEeecCHHHHHHHhhhc------ceeecCcccccHHHH
Confidence 1111111 1112233 899999999 89999999997776554321 234445566777778
Q ss_pred HHHHHHhcChhhH---HhHHHHHHHHHHHHHHHHHHHHhc-CC---CeeEecccceEEEEEEccCCcCCCCc-hHHHHHH
Q 002941 737 AKSIKWFKDPQTN---HNIIPERRILRELWDLELIQQISS-HR---TVQRVVALGTLCAIELQAAGCNAGYG-SLYAASL 808 (863)
Q Consensus 737 lAaL~~l~~~~l~---~~l~~~~~~l~~~l~~~l~~~~~~-~p---~v~~vrg~Gl~~~iel~~~~~~~~~~-~~~~~~l 808 (863)
-+.|+..-+++++ .+++..-...+..+ ...+.+ .| +..-+.--|+|+.|++.-...+.... ......+
T Consensus 336 ~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~----l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~i~q~~e~i 411 (472)
T KOG0634|consen 336 YAMLKRWGQEGFLRWIQHLRSSYTERRNAL----LSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKSINQIEEII 411 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhCCCCeeEEecCCcceEEEEEecccccccccchHHHHHHH
Confidence 8888877665444 44443333333322 223332 34 23344567999999996211111111 1245566
Q ss_pred HHHHHHCCcEEEec-----------CC-EEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 809 LKKLREDGVYMRPL-----------GN-VIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 809 ~~~l~e~GV~~~p~-----------g~-~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
...+.++||.+.++ +. .+|++-. ....|++++.+++|..++++.-
T Consensus 412 ~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a-~a~~e~l~~g~~rf~~~ike~f 468 (472)
T KOG0634|consen 412 FIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIA-FAEPEKLDEGIERFGSVIKEHF 468 (472)
T ss_pred HHHHHHCCeEEecCceeEEcCccCCCcceEEEEee-cCCHHHHHHHHHHHHHHHHHHh
Confidence 77888999998752 12 5555422 3477899999999999988743
No 363
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=98.22 E-value=2.8e-06 Score=92.98 Aligned_cols=197 Identities=16% Similarity=0.153 Sum_probs=113.5
Q ss_pred cHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccC
Q 002941 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~ 497 (863)
+|++.+|+.+.. .++-. -...+...+|.+++++++|. +.++|+.||+.||..|++...+ ++
T Consensus 8 ~~~m~~a~~~a~--~gd~~--Yg~D~~~~~l~~~i~~l~g~---e~a~f~~sGT~An~~al~~~~~---------~~--- 68 (290)
T PF01212_consen 8 TPAMLEAMAAAN--VGDDA--YGEDPTTARLEERIAELFGK---EAALFVPSGTMANQLALRAHLR---------PG--- 68 (290)
T ss_dssp -HHEEHHHHHTT--SB-CC--TTSSHHHHHHHHHHHHHHTS---SEEEEESSHHHHHHHHHHHHHH---------TT---
T ss_pred CHHHHHHHHccc--cCCcc--cCCChhHHHHHHHHHHHcCC---CEEEEeCCCChHHHHHHHHHHh---------cC---
Confidence 599999994433 22211 13467889999999999994 6788999999999999998742 11
Q ss_pred CCccccccccEEEEecCC-CccCccccc-eecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccc
Q 002941 498 KDTTEKCIELKVLALKGS-YHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (863)
Q Consensus 498 ~~~~~~~~r~~II~~~~s-YHG~t~gal-s~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (863)
..||+-+.+ +|....++. .++| ...+++|....
T Consensus 69 ---------~~vi~~~~aHi~~~E~ga~~~~~G------------------------------~~~~~l~~~~~------ 103 (290)
T PF01212_consen 69 ---------ESVICADTAHIHFDETGAIEELSG------------------------------AKLIPLPSDDD------ 103 (290)
T ss_dssp ---------EEEEEETTEHHHHSSTTHHHHHTT------------------------------CEEEEEBECTG------
T ss_pred ---------CceeccccceeeeeccchhhHhcC------------------------------cEEEECCCccc------
Confidence 345554442 222223332 1111 11122221000
Q ss_pred cccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCC
Q 002941 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (863)
Q Consensus 576 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gi 655 (863)
+. -+ .+.|++.++..- . +..++++|.+|-- ....|-.+++.+.+++|.++|++||+
T Consensus 104 G~-------------l~--------~~~l~~~~~~~~-~-h~~~~~~v~le~t-~~~~GG~~~s~~el~ai~~~a~~~gl 159 (290)
T PF01212_consen 104 GK-------------LT--------PEDLEAAIEEHG-A-HHPQPAVVSLENT-TELAGGTVYSLEELRAISELAREHGL 159 (290)
T ss_dssp TB-------------B---------HHHHHHHHHHHT-G-TSGGEEEEEEESS-BTTTTSB---HHHHHHHHHHHHHHT-
T ss_pred CC-------------CC--------HHHHHHHhhhcc-c-cCCCccEEEEEec-CcCCCCeeCCHHHHHHHHHHHHhCce
Confidence 00 01 245566665311 1 4467999999975 56655577789999999999999999
Q ss_pred eEEEecccccccccCC-----cchhhhcCCCCcEEEe--ccccCCCCCCceee-eccHHHHHh
Q 002941 656 PVIFDEVFTGFWRLGV-----ETTADLLGCVPDIACY--GKLLTGGVIPLAAT-LATNAVFDS 710 (863)
Q Consensus 656 lLI~DEV~TGfGRtG~-----~~a~e~~gv~PDivt~--sKgLggG~~Pigav-~~~~~i~~~ 710 (863)
.|.+| |- |... .-....+----|++++ .|+++ .|.|++ ++++++++.
T Consensus 160 ~lhmD----GA-Rl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g---~~~Gavl~~~~~~i~~ 214 (290)
T PF01212_consen 160 PLHMD----GA-RLANAAAALGVSLAEIAAGADSVSFGGTKNGG---APGGAVLAGNKEFIAK 214 (290)
T ss_dssp EEEEE----ET-THHHHHCHHHHHHHHHHTTSSEEEEETTSTT----SSSEEEEEESHHHHHH
T ss_pred EEEEe----hh-hHHHhhhcccccHHHHhhhCCEEEEEEEcccc---cccceEEEechHHHHH
Confidence 99999 43 4321 0011111234688766 57654 456665 467875443
No 364
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=98.22 E-value=0.00035 Score=77.96 Aligned_cols=314 Identities=14% Similarity=0.048 Sum_probs=189.3
Q ss_pred hHHHHHHHHHHhhcCCCCCCeE-EEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcc
Q 002941 443 EPALECAELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (863)
Q Consensus 443 ~~~~eLae~L~~~~p~~~~~~v-~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~ 521 (863)
+...+|.+.|++++| ++.| +--|+|+..=-+.|.+. |+||..+|+. . ++++....|-||.--
T Consensus 109 ~li~~Lq~~L~~ITG---~DavsLQP~AGAqGE~aGll~I-r~YHe~rG~~-~------------R~~~LIP~SAHGTNP 171 (496)
T COG1003 109 ELIYELQEWLKEITG---MDAVSLQPNAGAQGEYAGLLAI-RAYHESRGEG-H------------RNICLIPDSAHGTNP 171 (496)
T ss_pred HHHHHHHHHHHHhcC---CceeeccCCCCcchhhHHHHHH-HHHHHHcCCC-c------------CcEEEeeccccCCCh
Confidence 456689999999998 5666 45678888877778777 7899998863 2 568888899999877
Q ss_pred ccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHH
Q 002941 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (863)
Q Consensus 522 gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 601 (863)
.+.++.| +..+.++-. ...+ .+ .
T Consensus 172 ASAam~G------------------------------~~VV~V~~~---------------------~~G~-VD-----l 194 (496)
T COG1003 172 ASAAMAG------------------------------FKVVVVKCD---------------------ENGN-VD-----L 194 (496)
T ss_pred hhHhhcC------------------------------ceEEEEecC---------------------CCCC-cc-----H
Confidence 6666543 111222200 0001 01 3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecc----cccccccCCcch-h
Q 002941 602 SYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV----FTGFWRLGVETT-A 675 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV----~TGfGRtG~~~a-~ 675 (863)
++|+..++ +++||+++ .| +.-|+.- +-+.++.++..++|.+|..|-+ +-|.-|-|.+++ .
T Consensus 195 ddLk~k~~--------~~~AalMiTnP---sT~GvFE---~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~DV 260 (496)
T COG1003 195 DDLRAKAE--------DNLAALMITNP---STLGVFE---EDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFDV 260 (496)
T ss_pred HHHHHHhc--------cceeEEEeccC---cccccch---hhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccce
Confidence 45555553 56776655 56 3456543 2377888888999999999966 445555565332 2
Q ss_pred hhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhc----CCc---------cceeecccCCCccHHHHHHHHHHHHH
Q 002941 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG----DSK---------LKALLHGHSYSAHALGCAAAAKSIKW 742 (863)
Q Consensus 676 e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~----~~~---------~~~~~~~~T~~~~pla~AAalAaL~~ 742 (863)
-|+++.- ||+-.=|||---.|-|.+++.+..++.. ... .....-..+|.||......+.+-+..
T Consensus 261 ~HlNLHK---TF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~~ 337 (496)
T COG1003 261 VHLNLHK---TFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYIRM 337 (496)
T ss_pred EEeeccc---ccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcchHHHHHHHHHHH
Confidence 2332210 4443334442334456677888777654 110 01122345677888888888888887
Q ss_pred hcChhhH---HhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCc-CCCCchHHHHHHHHHHHHCCcE
Q 002941 743 FKDPQTN---HNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC-NAGYGSLYAASLLKKLREDGVY 818 (863)
Q Consensus 743 l~~~~l~---~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~-~~~~~~~~~~~l~~~l~e~GV~ 818 (863)
+-.+++. +...-++.++..+| .. .++.. ..+.. ...-|+.-+.. -.......+..++++|++.|+.
T Consensus 338 mG~~GL~~ase~AvLNANYia~rL----~~---~y~~~--y~~~~-~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~GfH 407 (496)
T COG1003 338 MGADGLKQASEVAVLNANYIARRL----KG---YYPVP--YTGEN-RVAHECILDARPLKKETGVRALDVAKRLLDYGFH 407 (496)
T ss_pred HhHHHHHHHHHHHHHhHHHHHHHh----hh---cCccc--cCCCC-cceeEEEeechHhHhhcCCcHHHHHHHHHhcCCC
Confidence 7554443 22233344444432 21 23321 12232 34444432210 0000112467899999999997
Q ss_pred EE----e--cCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 002941 819 MR----P--LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVE 857 (863)
Q Consensus 819 ~~----p--~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~~~ 857 (863)
.. | ..+.+++-|.-.-+.+++|++++++.++..+.+++.
T Consensus 408 aPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~~~ 452 (496)
T COG1003 408 APTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEADAVP 452 (496)
T ss_pred CCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 64 4 458899998888899999999999999888877653
No 365
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=98.21 E-value=0.00034 Score=74.98 Aligned_cols=225 Identities=14% Similarity=0.116 Sum_probs=125.4
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (863)
+.+++.|.+ ....+.+|+-. .++.|+.-+ .++...++|++|+++|++|-|-+ + .|..|.++.|||
T Consensus 132 e~i~~~lsq------h~p~~vfv~hg--dsSTgV~q~---~~~~~g~lc~k~~~lllVD~VaS-l--ggt~F~mDewgV- 196 (385)
T KOG2862|consen 132 EEITEKLSQ------HKPKAVFVTHG--DSSTGVLQD---LLAISGELCHKHEALLLVDTVAS-L--GGTEFEMDEWGV- 196 (385)
T ss_pred HHHHHHHHh------cCCceEEEEec--Cccccccch---HHHHHHHHhhcCCeEEEEechhh-c--CCccceehhhcc-
Confidence 456666753 22234444443 456676543 57788899999999999999875 4 366889999987
Q ss_pred CcEEEe--ccccCCCCCCceeeeccHHHHHhhhcCCc-cceeecc----cCCC-----------ccHH-HHHHHHHHHHH
Q 002941 682 PDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDSK-LKALLHG----HSYS-----------AHAL-GCAAAAKSIKW 742 (863)
Q Consensus 682 PDivt~--sKgLggG~~Pigav~~~~~i~~~l~~~~~-~~~~~~~----~T~~-----------~~pl-a~AAalAaL~~ 742 (863)
|+.-- =|+|++- .-++.+..+++.++.++.... ...+++. .+|. ..|+ ..-+-.++|+.
T Consensus 197 -DvaytgSQKaL~aP-~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~ 274 (385)
T KOG2862|consen 197 -DVAYTGSQKALGAP-AGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALAL 274 (385)
T ss_pred -cEEEecchhhcCCC-CCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHH
Confidence 65533 3888752 224447778888888875321 1111110 1111 1233 33455677877
Q ss_pred hcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe-
Q 002941 743 FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP- 821 (863)
Q Consensus 743 l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p- 821 (863)
+-+++ +++.+++-+++.+.++..+.++--+.=.+.+-...-..-++..+.. ....+++..++.++.+.-.
T Consensus 275 I~eeG-L~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp~g--------vDw~dVv~~~~~~~~vei~g 345 (385)
T KOG2862|consen 275 IAEEG-LENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVPYG--------VDWKDVVAYAMSHYVVEIGG 345 (385)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCcceeeecCCC--------CCHHHHHHHHHHhcCEEecc
Confidence 75555 4556666666766665554432111100000000111111211110 1245678888888554432
Q ss_pred -----cCCEEEEecCCC-CcHHHHHHHHHHHHHHHHH
Q 002941 822 -----LGNVIYLMCGPC-SSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 822 -----~g~~lr~~ppl~-~t~eeid~~v~~L~~~l~~ 852 (863)
.|..+||-.--+ .+-|-|+..++.|..++.+
T Consensus 346 glg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~ 382 (385)
T KOG2862|consen 346 GLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQR 382 (385)
T ss_pred ccCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence 246777763333 3778889888888887754
No 366
>CHL00175 minD septum-site determining protein; Validated
Probab=98.20 E-value=7.8e-06 Score=89.13 Aligned_cols=87 Identities=13% Similarity=0.104 Sum_probs=62.7
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCC--------
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV-------- 292 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~-------- 292 (863)
+|++||.+..|+.... .......+ .+|+|+.....++.++...++.++..+....++|+|++...
T Consensus 127 yD~VIiDtpp~~~~~~------~~~l~~aD-~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~~~~ 199 (281)
T CHL00175 127 YDYILIDCPAGIDVGF------INAIAPAQ-EAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPDMIQANDMM 199 (281)
T ss_pred CCEEEEeCCCCCCHHH------HHHHHhcC-eeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChhhhhhhccc
Confidence 4999999977653322 22222223 58889999999999999999999888877789999988432
Q ss_pred CHHHHHHhhcCCCCeee-cCCCCCC
Q 002941 293 NEVPLMSYLRNRVPVLV-LPPLPQD 316 (863)
Q Consensus 293 ~~~~~~~~~~~~~pvl~-~p~~~~~ 316 (863)
....++++ -+.|+++ ||+.+.+
T Consensus 200 ~~~~l~~~--~~~~~~~~Ip~d~~v 222 (281)
T CHL00175 200 SVRDVQEM--LGIPLLGAIPEDENV 222 (281)
T ss_pred cHHHHHHH--hCCCeEEEccCCHhH
Confidence 22335555 3689999 9887654
No 367
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=98.18 E-value=0.00012 Score=80.30 Aligned_cols=181 Identities=14% Similarity=0.147 Sum_probs=114.7
Q ss_pred HHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCcccccccc
Q 002941 428 TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL 507 (863)
Q Consensus 428 q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~ 507 (863)
+++..++.. ....+|-...|+||++.+=|+ -....+.||-.|.-.|+--..+ .| .
T Consensus 48 ~l~~~G~iY-sRi~NPT~~vlE~RiAaLEGG---~aa~a~aSG~AA~~~ai~~la~---------aG------------D 102 (426)
T COG2873 48 GLKEPGNIY-TRIMNPTTDVLEERIAALEGG---VAALAVASGQAAITYAILNLAG---------AG------------D 102 (426)
T ss_pred CCCcCCcee-eeccCchHHHHHHHHHHhhcc---hhhhhhccchHHHHHHHHHhcc---------CC------------C
Confidence 344545442 234577788899999997553 3456677999888888765522 23 5
Q ss_pred EEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchh
Q 002941 508 KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587 (863)
Q Consensus 508 ~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~ 587 (863)
.||+-..-|=|+ ..-.+.+ ++ .+|.- + .|
T Consensus 103 ~iVss~~LYGGT-~~lf~~t----l~---------~~Gi~--------------v----------------~f------- 131 (426)
T COG2873 103 NIVSSSKLYGGT-YNLFSHT----LK---------RLGIE--------------V----------------RF------- 131 (426)
T ss_pred eeEeeccccCch-HHHHHHH----HH---------hcCcE--------------E----------------EE-------
Confidence 688887777554 2222221 00 00100 0 00
Q ss_pred hcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccccc
Q 002941 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667 (863)
Q Consensus 588 ~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfG 667 (863)
-+..| .+.++++++ ++..+|.+|.+ .+.++.++- ++++.++|++||++||+|-..+.
T Consensus 132 vd~~d--------~~~~~~aI~--------~nTkavf~Eti-gNP~~~v~D----ie~ia~iAh~~gvpliVDNT~at-- 188 (426)
T COG2873 132 VDPDD--------PENFEAAID--------ENTKAVFAETI-GNPGLDVLD----IEAIAEIAHRHGVPLIVDNTFAT-- 188 (426)
T ss_pred eCCCC--------HHHHHHHhC--------cccceEEEEec-cCCCccccC----HHHHHHHHHHcCCcEEEecCCCc--
Confidence 00011 134556664 46789999997 788776665 99999999999999999987642
Q ss_pred ccCCcchhhhcCCCCcEEE--eccccCCCCCCceeeeccHHHHHhh
Q 002941 668 RLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSF 711 (863)
Q Consensus 668 RtG~~~a~e~~gv~PDivt--~sKgLggG~~Pigav~~~~~i~~~l 711 (863)
.+-++-+..-.|||+ .+|-+||---.||.+++...-.|+-
T Consensus 189 ----pyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~ 230 (426)
T COG2873 189 ----PYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWT 230 (426)
T ss_pred ----ceecchhhcCCCEEEEeecccccCCccccceEEEeCCccccc
Confidence 245555555689995 5799986226788887765555554
No 368
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=98.17 E-value=8.8e-06 Score=87.16 Aligned_cols=102 Identities=10% Similarity=0.134 Sum_probs=69.3
Q ss_pred ChhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHH
Q 002941 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (863)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (863)
..+.+.+.+..+.+.| |++||++.+|+..+. .......+ -||+|+.....++.++...++
T Consensus 97 ~~~~l~~~l~~l~~~~-------------D~viiD~p~~~~~~~------~~~l~~aD-~viiv~~~~~~s~~~~~~~~~ 156 (261)
T TIGR01968 97 TPEQMKKLVNELKEEF-------------DYVIIDCPAGIESGF------RNAVAPAD-EAIVVTTPEVSAVRDADRVIG 156 (261)
T ss_pred CHHHHHHHHHHHHHhC-------------CEEEEeCCCCcCHHH------HHHHHhCC-eEEEEcCCCcHHHHHHHHHHH
Confidence 3345556666666665 999999988765432 12222222 378888999999999999999
Q ss_pred HHHhCCCcEEEEEEcCCCCC--------CHHHHHHhhcCCCCeee-cCCCCCC
Q 002941 273 SLKLRGYDVVAVVFEDHGLV--------NEVPLMSYLRNRVPVLV-LPPLPQD 316 (863)
Q Consensus 273 ~~~~~~~~v~gvi~n~~~~~--------~~~~~~~~~~~~~pvl~-~p~~~~~ 316 (863)
.+...+..-.++|+|++... ....+++. .+.|+++ ||.....
T Consensus 157 ~l~~~~~~~~~iviN~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Ip~~~~~ 207 (261)
T TIGR01968 157 LLEAKGIEKIHLIVNRLRPEMVKKGDMLSVDDVLEI--LSIPLIGVIPEDEAI 207 (261)
T ss_pred HHHHcCCCceEEEEeCcCchhcccccccCHHHHHHH--hCCceeEEccCCHHH
Confidence 99877766789999987321 22344444 3688888 8886543
No 369
>PLN02724 Molybdenum cofactor sulfurase
Probab=98.11 E-value=0.0014 Score=81.79 Aligned_cols=217 Identities=13% Similarity=0.041 Sum_probs=125.6
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc--------CCeEEEecccccccccCCcchhhhcCCCCcEEEec--
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--------KIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG-- 688 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~--------gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s-- 688 (863)
++..|.+--+ .+..|.+.| ++.+.++++.. ++++++|=+|+ +|.. . .+.-.+.+|.+++|
T Consensus 192 ~t~LVa~~~v-sN~tG~i~p----i~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~-~g~~--p--iDv~~~~~Dfl~~S~H 261 (805)
T PLN02724 192 AYNLFAFPSE-CNFSGAKFP----LDLVKLIKDNQHSNFSKSGRWMVLLDAAKG-CGTS--P--PDLSRYPADFVVVSFY 261 (805)
T ss_pred CcceEEEEcc-ccCCCCcCC----HHHHHHHHHhcccccccCcceEEEeehhhh-cCCC--C--CChhhcCCCEEEEecc
Confidence 3445666665 778898887 55555555432 36899999884 4332 1 12223458999886
Q ss_pred cccCCCCCCceeeeccHHHHHhhhcCCc-ccee--------ec--------c-cCCCccHHHHHHHHHHHHHhcChhhHH
Q 002941 689 KLLTGGVIPLAATLATNAVFDSFVGDSK-LKAL--------LH--------G-HSYSAHALGCAAAAKSIKWFKDPQTNH 750 (863)
Q Consensus 689 KgLggG~~Pigav~~~~~i~~~l~~~~~-~~~~--------~~--------~-~T~~~~pla~AAalAaL~~l~~~~l~~ 750 (863)
|.+||- .-+|++++++++.+.+...-. .... ++ . -.-+.|.+++++..++|+++++-+ .+
T Consensus 262 K~~GgP-~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig-~~ 339 (805)
T PLN02724 262 KIFGYP-TGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLT-IS 339 (805)
T ss_pred eeccCC-CCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhC-hH
Confidence 877632 237889999988776543100 0000 00 0 001346778888888999886533 34
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh--cCCCeeEe---------cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEE
Q 002941 751 NIIPERRILRELWDLELIQQIS--SHRTVQRV---------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM 819 (863)
Q Consensus 751 ~l~~~~~~l~~~l~~~l~~~~~--~~p~v~~v---------rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~ 819 (863)
++.+....|.+++.+.|.++-. ..|.|.-. ..++.++.+.+...... .. ....+...+-++||.+
T Consensus 340 ~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~-~v---~~~~v~~l~~~~gI~v 415 (805)
T PLN02724 340 AIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGS-WV---GHREVEKLASLSGIQL 415 (805)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCC-Ee---CHHHHHHHHHhcCcEE
Confidence 5566666666666555433210 11222111 12566777777653200 00 0122333344567777
Q ss_pred Eec----------------------------------------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 820 RPL----------------------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 820 ~p~----------------------------------------g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+.+ .+.+|++..+..|.+|||++++.|++..-
T Consensus 416 R~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~ 487 (805)
T PLN02724 416 RTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFV 487 (805)
T ss_pred eeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhh
Confidence 521 15689999999999999999999998763
No 370
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=98.10 E-value=0.00053 Score=77.43 Aligned_cols=182 Identities=12% Similarity=0.028 Sum_probs=108.6
Q ss_pred HHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCc-c---ce-eec
Q 002941 648 KECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-L---KA-LLH 722 (863)
Q Consensus 648 elc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~-~---~~-~~~ 722 (863)
++++.||+++++|=+++ +|-. ..-.+.+++ ++..-=|.+| - .-+|.+++++++.+.+....+ . .. ...
T Consensus 157 ~i~~~~g~~~~VDa~qs-~g~~--~idv~~~~~--~~ss~~K~lG-P-~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (355)
T cd00611 157 EVPDTGGVPLVADMSSN-ILSR--PIDVSKFGV--IYAGAQKNLG-P-AGVTVVIVRKDLLGKARKITPSMLNYKTHADN 229 (355)
T ss_pred eecccCCCeEEEEcccc-ccCC--CCCHHHhCE--EEeecccccC-C-CceEEEEECHHHHhhcccCCCCcccHHHHHhc
Confidence 56677999999999996 4322 233333442 1111237663 2 237889999998876543210 0 00 001
Q ss_pred ccCC-CccHHHHHHHHHHHHHhcCh-hhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee-Ee---ccc-ceEEEEEEccCC
Q 002941 723 GHSY-SAHALGCAAAAKSIKWFKDP-QTNHNIIPERRILRELWDLELIQQISSHRTVQ-RV---VAL-GTLCAIELQAAG 795 (863)
Q Consensus 723 ~~T~-~~~pla~AAalAaL~~l~~~-~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~-~v---rg~-Gl~~~iel~~~~ 795 (863)
..++ +.|-.+..+..++|+++.+. + .+++.++.+.+.+.+.+.+ ++.|.+. .. ..+ +.++.+.+...
T Consensus 230 ~~~~~Tpn~~~i~~L~aal~~l~~~gg-~e~i~~~~~~l~~~l~~~l----~~~~gl~~~~~~~~~rs~~vvsf~~~~~- 303 (355)
T cd00611 230 NSLYNTPPTFAIYMMGLVLKWLKEQGG-VEAMEKRNRQKAQLLYDTI----DNSNGFYRGPVDKRARSRMNVPFRLGKE- 303 (355)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHH----HhCccccccCCCHHHcCceEEEEEcCCh-
Confidence 1112 34556778888999998765 4 4666777777777665443 3332221 11 112 24566665431
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
.....+...+.++|++..+. .+.+|+++...+|+||||+++++|++.
T Consensus 304 -------~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 304 -------ELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred -------hhhHHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 12244556788899985443 268999988888999999999998873
No 371
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=98.07 E-value=0.00014 Score=79.10 Aligned_cols=74 Identities=22% Similarity=0.151 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHH
Q 002941 196 KVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK 275 (863)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~ 275 (863)
.+.+.+.++.++| |+|||.+ .|........-++...+ -||+|+..+.-++..+..+++.++
T Consensus 201 ~~~~~l~~l~~~y-------------D~ViiD~-----pp~~~~~d~~~~~~~~d-~vilV~~~~~t~~~~~~~~~~~l~ 261 (274)
T TIGR03029 201 AFTDLLNKVMGDY-------------DVVIVDT-----PSAEHSSDAQIVATRAR-GTLIVSRVNETRLHELTSLKEHLS 261 (274)
T ss_pred HHHHHHHHHHhcC-------------CEEEEeC-----CCcccccHHHHHHHhCC-eEEEEEECCCCCHHHHHHHHHHHH
Confidence 4555666666666 9999999 34322223344555444 577899988899999999999999
Q ss_pred hCCCcEEEEEEcC
Q 002941 276 LRGYDVVAVVFED 288 (863)
Q Consensus 276 ~~~~~v~gvi~n~ 288 (863)
..|.+++|+|+|+
T Consensus 262 ~~~~~~~G~VlN~ 274 (274)
T TIGR03029 262 GVGVRVVGAVLNQ 274 (274)
T ss_pred hCCCCEEEEEeCC
Confidence 9999999999996
No 372
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=98.03 E-value=0.0005 Score=83.17 Aligned_cols=312 Identities=14% Similarity=0.124 Sum_probs=159.2
Q ss_pred ChHHHHHHHHHHhhcCCCCCCeEEEeCChh-hHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCc
Q 002941 442 YEPALECAELLLQGVGKGWASRAYFSDNGS-TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (863)
Q Consensus 442 ~~~~~eLae~L~~~~p~~~~~~v~f~~SGS-eAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t 520 (863)
+.+..+..+..++.++ .++.+|..+|| .+|.+++..+. + +.+.|.++...|=+-
T Consensus 194 ~G~i~eAe~~aA~~fg---Ad~tyfvvNGTS~~n~av~~a~~-----------~-----------~Gd~VLvdRN~HKSv 248 (713)
T PRK15399 194 TGPHLEAEEYIARTFG---AEQSYIVTNGTSTSNKIVGMYAA-----------P-----------AGSTLLIDRNCHKSL 248 (713)
T ss_pred ChHHHHHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHhc-----------C-----------CCCEEEeecccHHHH
Confidence 3455566666667777 57888888885 46666665442 1 134666788888887
Q ss_pred cccceecC-CCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 521 LGAMEAQA-PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 521 ~gals~t~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
..++.++| .+.|-.+. +...|... ++|. .++.
T Consensus 249 ~~aLilsga~PVYl~P~----~n~~Gi~g--------------~I~~---------------------------~~~~-- 281 (713)
T PRK15399 249 AHLLMMSDVVPIWLKPT----RNALGILG--------------GIPR---------------------------REFT-- 281 (713)
T ss_pred HHHHHHcCCeeEEeccc----ccccCCcC--------------CCCh---------------------------hhcc--
Confidence 77777765 33332110 00111000 0000 0000
Q ss_pred HHHHHHHHHhcCCCCCCCCc---EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeE-EEecccccccccCCcch-
Q 002941 600 YSSYISQNLLQNPGLKVSGC---IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV-IFDEVFTGFWRLGVETT- 674 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~---iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilL-I~DEV~TGfGRtG~~~a- 674 (863)
.+.+++.+++ +++. .++||.-|. -.|+..- ++.+.++| |+.+ ++||+|-|.-+....+.
T Consensus 282 -~e~I~~~i~~-----~p~~~~p~~vvit~pT---YdGi~yd----~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~ 345 (713)
T PRK15399 282 -RDSIEEKVAA-----TTQAQWPVHAVITNST---YDGLLYN----TDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQG 345 (713)
T ss_pred -HHHHHHHHHh-----CCCcCCceEEEEECCC---CCceeeC----HHHHHHHh---CCCEEEEeccchhhhhcCcccCC
Confidence 1456666754 2322 578999895 3566554 66677777 7877 59999976555544222
Q ss_pred hhh--cCCCCcEE---Eec--cccCCCCCCceeeeccHHHH-HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-
Q 002941 675 ADL--LGCVPDIA---CYG--KLLTGGVIPLAATLATNAVF-DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD- 745 (863)
Q Consensus 675 ~e~--~gv~PDiv---t~s--KgLggG~~Pigav~~~~~i~-~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~- 745 (863)
... .+-.+|.+ |=| |-|++ +-.-|.+-.+..+- +.|.. ++..-.|.+.+=+-+|+.-.+..+++.
T Consensus 346 ~sam~~~~~aD~~i~~tQStHKtL~a-lTQaS~iHvk~~vd~~~~n~-----a~~m~~STSPsY~LmASLD~a~~~m~~~ 419 (713)
T PRK15399 346 KSGMSGERVPGKVIFETQSTHKMLAA-FSQASLIHIKGEYDEETFNE-----AFMMHTSTSPSYPIVASVETAAAMLRGN 419 (713)
T ss_pred cChhhCCCCCCeeeeeeeehhccccc-cchheeeeecCCCCHHHHHH-----HHHHHcCCCcHHHHHHHHHHHHHHHHhh
Confidence 111 11257887 434 76654 12222333332211 11221 122234455555555555555555543
Q ss_pred --hhhHHhHHHHHHHHHHHHHHHHHHHHhcC-CCeeEec--------------------ccce-----------EEEEEE
Q 002941 746 --PQTNHNIIPERRILRELWDLELIQQISSH-RTVQRVV--------------------ALGT-----------LCAIEL 791 (863)
Q Consensus 746 --~~l~~~l~~~~~~l~~~l~~~l~~~~~~~-p~v~~vr--------------------g~Gl-----------~~~iel 791 (863)
..+.++..+.+..+++.+.+ ..... +....+. |.+- =+.|..
T Consensus 420 ~G~~l~~~~i~~a~~fR~~l~~----~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~KltI~t 495 (713)
T PRK15399 420 PGKRLINRSVERALHFRKEVQR----LREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDPVKVTILT 495 (713)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh----ccccccCceeeecCccccCCccceecCCCcccccccccccccccCCCceEEEEe
Confidence 23445555555566554422 11100 0000000 0000 000101
Q ss_pred ccCCcCCCC--chHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 792 QAAGCNAGY--GSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 792 ~~~~~~~~~--~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
..-.....+ ..-.+..+.+.|.++||.+--.+ +.+.+..++..|+++++.++++|.+.-+
T Consensus 496 ~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~L~~aL~~f~~ 558 (713)
T PRK15399 496 PGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFKR 558 (713)
T ss_pred cCcccccccccCCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 000000000 01135677888999999997654 6777888889999999999998876533
No 373
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=98.01 E-value=0.00028 Score=79.95 Aligned_cols=234 Identities=15% Similarity=0.096 Sum_probs=132.7
Q ss_pred CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCc
Q 002941 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (863)
Q Consensus 441 ~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t 520 (863)
.++-...|+++++++=| .+.++-++||-.|+.+++...++ .| ..|+..+..|.|.-
T Consensus 61 ~nPT~~~lE~~~a~LEg---~~~~~afsSGmaAI~~~~l~ll~---------~G------------D~vl~~~~~YG~t~ 116 (396)
T COG0626 61 GNPTRDALEEALAELEG---GEDAFAFSSGMAAISTALLALLK---------AG------------DHVLLPDDLYGGTY 116 (396)
T ss_pred CCccHHHHHHHHHHhhC---CCcEEEecCcHHHHHHHHHHhcC---------CC------------CEEEecCCccchHH
Confidence 46778889999999865 46789999999999988765531 12 57888888887753
Q ss_pred cccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHH
Q 002941 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (863)
Q Consensus 521 ~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 600 (863)
...-.+.. .++ +....+ +...+
T Consensus 117 ~~~~~~l~--------------~~g-------------i~~~~~-----------------------d~~~~-------- 138 (396)
T COG0626 117 RLFEKILQ--------------KFG-------------VEVTFV-----------------------DPGDD-------- 138 (396)
T ss_pred HHHHHHHH--------------hcC-------------eEEEEE-----------------------CCCCh--------
Confidence 32221100 000 000000 00010
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC
Q 002941 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (863)
Q Consensus 601 ~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (863)
..+++.+. ++++-+|++|+- .+.-- .+.+ +++|.++++++|+++|+|..... ...++-+..
T Consensus 139 -~~~~~~~~-------~~~tk~v~lEtP-sNP~l-~v~D---I~~i~~~A~~~g~~vvVDNTfat------P~~q~PL~~ 199 (396)
T COG0626 139 -EALEAAIK-------EPNTKLVFLETP-SNPLL-EVPD---IPAIARLAKAYGALVVVDNTFAT------PVLQRPLEL 199 (396)
T ss_pred -HHHHHHhc-------ccCceEEEEeCC-CCccc-cccc---HHHHHHHHHhcCCEEEEECCccc------ccccChhhc
Confidence 12223331 246889999985 55443 3333 89999999999999999998742 122333334
Q ss_pred CCcEEEe--ccccCCCCCC-ceeeec-cHHHHHhhhcCCccceeecccC-C--CccHHHHHHHHHHHHHhcChhhHHhHH
Q 002941 681 VPDIACY--GKLLTGGVIP-LAATLA-TNAVFDSFVGDSKLKALLHGHS-Y--SAHALGCAAAAKSIKWFKDPQTNHNII 753 (863)
Q Consensus 681 ~PDivt~--sKgLggG~~P-igav~~-~~~i~~~l~~~~~~~~~~~~~T-~--~~~pla~AAalAaL~~l~~~~l~~~l~ 753 (863)
-.||++- .|=++|.-=- .|++++ ++++.+.+.. .... + ...|..+--.+-.|+-|. -..++..
T Consensus 200 GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~--------~~~~~~G~~l~p~dA~l~lRGlkTL~--~Rm~~~~ 269 (396)
T COG0626 200 GADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFF--------AQRANTGAVLSPFDAWLLLRGLRTLA--LRMERHN 269 (396)
T ss_pred CCCEEEEeccccccCCcceeeeEEecChHHHHHHHHH--------HHHhhcCCCCCHHHHHHHHhccchHH--HHHHHHH
Confidence 4799865 5988752122 234554 4555555421 1111 1 224444443333333221 1123444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEec------------------ccceEEEEEEcc
Q 002941 754 PERRILRELWDLELIQQISSHRTVQRVV------------------ALGTLCAIELQA 793 (863)
Q Consensus 754 ~~~~~l~~~l~~~l~~~~~~~p~v~~vr------------------g~Gl~~~iel~~ 793 (863)
+++..+.+ .++++|.|..|. |.|.|+.+++..
T Consensus 270 ~nA~~IA~--------~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~ 319 (396)
T COG0626 270 ENALKIAE--------FLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKN 319 (396)
T ss_pred HHHHHHHH--------HHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCC
Confidence 44444443 445677666552 588999999986
No 374
>PLN02271 serine hydroxymethyltransferase
Probab=98.01 E-value=0.00042 Score=81.12 Aligned_cols=202 Identities=12% Similarity=-0.016 Sum_probs=110.4
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVI 696 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~ 696 (863)
+...||+... ... ...+ +++++++|+++|++|++|-+|+ .|-........-+ ...|++|. -|+|.|-
T Consensus 298 rPKLII~g~S-ayp--r~~D----~~~i~eIAdevGA~LmvD~AH~-aGLIa~g~~~sP~-~~aDvvt~TTHKtLrGP-- 366 (586)
T PLN02271 298 RPKILICGGS-SYP--REWD----YARFRQIADKCGAVLMCDMAHI-SGLVAAKECVNPF-DYCDIVTSTTHKSLRGP-- 366 (586)
T ss_pred CCeEEEECch-hcc--CcCC----HHHHHHHHHHcCCEEEEECccc-ccccccCcCCCCC-cCCcEEEeCCcccCCCC--
Confidence 4557777553 111 2222 8899999999999999999995 4433211000001 13699876 4999652
Q ss_pred CceeeeccHH--------------------HHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChh---hHHhHH
Q 002941 697 PLAATLATNA--------------------VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ---TNHNII 753 (863)
Q Consensus 697 Pigav~~~~~--------------------i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~---l~~~l~ 753 (863)
.-|.++++++ +.+.+... ..+.+.+++ +...+|+-..+++.+..++ +.+++.
T Consensus 367 rGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~a--VfPglqgGp---hn~~IAalAvalkea~~~efk~Ya~QVv 441 (586)
T PLN02271 367 RGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFA--VFPSLQGGP---HNNHIAALAIALKQVATPEYKAYMQQVK 441 (586)
T ss_pred CceEEEecccccccccCCccccccccccHHHHHHhhcc--cCCccccCh---hHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 1234555553 33333221 111122222 2223444444566554444 567777
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE----ec------
Q 002941 754 PERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR----PL------ 822 (863)
Q Consensus 754 ~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~----p~------ 822 (863)
+|++.|.+.|.++ .++.|. .|. --++.+++.... -......+.|-+.||.+. |+
T Consensus 442 ~NAkaLA~~L~~~------G~~vv~--ggTdnHlvLvDl~~~g-------~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~ 506 (586)
T PLN02271 442 KNAQALASALLRR------KCRLVT--GGTDNHLLLWDLTTLG-------LTGKNYEKVCEMCHITLNKTAIFGDNGTIS 506 (586)
T ss_pred HHHHHHHHHHHHC------CCeEee--CCCCcceeeecCcccC-------CCHHHHHHHHHHcCeEeccccCCCCCCCCC
Confidence 8887777655332 233332 111 134445553321 013455666777898884 21
Q ss_pred CCEEEEecCCCC----cHHHHHHHHHHHHHHHH
Q 002941 823 GNVIYLMCGPCS----SPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 823 g~~lr~~ppl~~----t~eeid~~v~~L~~~l~ 851 (863)
...+|+-.|..+ .++|++++.+.|.++++
T Consensus 507 psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 507 PGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred CCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 146777655543 67889998888888876
No 375
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.94 E-value=4.9e-05 Score=76.44 Aligned_cols=85 Identities=16% Similarity=0.208 Sum_probs=60.0
Q ss_pred ceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCC--C----HH
Q 002941 222 ILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV--N----EV 295 (863)
Q Consensus 222 d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~--~----~~ 295 (863)
|++||++.+++... ........+ -+|+|+.....++..+...++.++..+.+..++|+|+.... . ..
T Consensus 64 d~viiD~p~~~~~~------~~~~l~~ad-~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIERG------FITAIAPAD-EALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcHH------HHHHHHhCC-cEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhhHHH
Confidence 99999997764332 222233333 48889999999999999999999888888999999987332 1 12
Q ss_pred HHHHhhcCCCCeee-cCCCCC
Q 002941 296 PLMSYLRNRVPVLV-LPPLPQ 315 (863)
Q Consensus 296 ~~~~~~~~~~pvl~-~p~~~~ 315 (863)
.++++ .+.|+++ ||..+.
T Consensus 137 ~~~~~--~~~~v~~~Ip~~~~ 155 (179)
T cd02036 137 DIEEI--LGVPLLGVIPEDPA 155 (179)
T ss_pred HHHHH--hCCCEEEEecCCHH
Confidence 34444 3788888 887544
No 376
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=97.93 E-value=5.8e-05 Score=76.90 Aligned_cols=66 Identities=21% Similarity=0.190 Sum_probs=46.0
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhCC--CcEEEEEEcCCCCCC
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRG--YDVVAVVFEDHGLVN 293 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~--~~v~gvi~n~~~~~~ 293 (863)
+|++||++.+|+..+ ...+....+ -+|+|+....-.+..+...++.++..+ .+++++|+|++...+
T Consensus 95 yD~iiiD~~~~~~~~------~~~~l~~ad-~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~ 162 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP------VRNALAAAD-YVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPGN 162 (195)
T ss_dssp SSEEEEEECSSSSHH------HHHHHHTSS-EEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCC
T ss_pred ccceeecccccccHH------HHHHHHhCc-eeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCCc
Confidence 499999998766655 222222222 256667766667888888888888666 568999999996554
No 377
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=97.91 E-value=0.00012 Score=81.37 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=63.0
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcH---HHHHHHHHHHHhCC--CcEEEEEEcCCCCCC-H
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGI---SGTISAYESLKLRG--YDVVAVVFEDHGLVN-E 294 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i---~~~~~~~~~~~~~~--~~v~gvi~n~~~~~~-~ 294 (863)
.|++||...|++... .....+++.+.--||+|.....-++ +.+..+++.++..| .++.|+|+|+....+ .
T Consensus 148 ~DyVliD~~gdv~~g----gf~l~i~~~~ad~VIVVt~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~~~i 223 (329)
T cd02033 148 FDYVLLDFLGDVVCG----GFGLPIARDMAQKVIVVGSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGTGEA 223 (329)
T ss_pred CCEEEEecCCcceec----cccchhhhcCCceEEEeCCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCcchH
Confidence 499999998866522 1223333334335788888887777 55777888888764 678999999985433 3
Q ss_pred HHHHHhhcCCCCeee-cCCCCCCC
Q 002941 295 VPLMSYLRNRVPVLV-LPPLPQDS 317 (863)
Q Consensus 295 ~~~~~~~~~~~pvl~-~p~~~~~~ 317 (863)
+.+.+. .++|+++ ||+.+...
T Consensus 224 e~~ae~--lgi~vLg~IP~D~~V~ 245 (329)
T cd02033 224 QAFAAH--AGIPILAAIPADEELR 245 (329)
T ss_pred HHHHHH--hCCCEEEECCCCHHHH
Confidence 344444 4899999 99988764
No 378
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=97.89 E-value=0.00022 Score=75.73 Aligned_cols=115 Identities=22% Similarity=0.284 Sum_probs=87.1
Q ss_pred hHHHHhhhcCCCCChhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECC
Q 002941 180 PHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDG 259 (863)
Q Consensus 180 p~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~ 259 (863)
|...++.. -+...-.+++..+++...+. .|++||.++=|+..|.......+|+ +|+|+-.
T Consensus 136 ~li~g~l~-vGe~~s~~lV~~~kk~a~E~------------~~~~IIDsaaG~gCpVi~sl~~aD~-------ai~VTEP 195 (284)
T COG1149 136 PLISGRLN-VGEEESGKLVTALKKHAKEL------------ADLLIIDSAAGTGCPVIASLKGADL-------AILVTEP 195 (284)
T ss_pred eeEEeecc-CCccccchHHHHHHHhhhhh------------cceeEEecCCCCCChHHHhhccCCE-------EEEEecC
Confidence 44444444 33445567777777766652 4999999999999997555555554 5788889
Q ss_pred CCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCCCHHHHHHhhc-CCCCeee-cCCCCCC
Q 002941 260 RLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLR-NRVPVLV-LPPLPQD 316 (863)
Q Consensus 260 ~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~~~~~~~~~~~-~~~pvl~-~p~~~~~ 316 (863)
.--++++...+++..+.-|++ .++|+|+....+. .++++-+ .++|+++ ||+..+.
T Consensus 196 Tp~glhD~kr~~el~~~f~ip-~~iViNr~~~g~s-~ie~~~~e~gi~il~~IPyd~~i 252 (284)
T COG1149 196 TPFGLHDLKRALELVEHFGIP-TGIVINRYNLGDS-EIEEYCEEEGIPILGEIPYDKDI 252 (284)
T ss_pred CccchhHHHHHHHHHHHhCCc-eEEEEecCCCCch-HHHHHHHHcCCCeeEECCcchhH
Confidence 999999999999999988887 7899999854444 6777654 3899999 9998775
No 379
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=97.89 E-value=0.00046 Score=71.84 Aligned_cols=74 Identities=19% Similarity=0.119 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHH
Q 002941 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (863)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~ 274 (863)
+.+.+.+..+.++| ..|++||.+..++. ......++...+ -||+|+....-++..+..+++.+
T Consensus 134 ~~l~~~l~~l~~~y-----------~~D~IiiD~pp~~~-----~~~~~~l~~~aD-~viiV~~~~~~~~~~~~~~~~~l 196 (207)
T TIGR03018 134 QRMRSLLHELARRY-----------PDRIIIIDTPPLLV-----FSEARALARLVG-QIVLVVEEGRTTQEAVKEALSAL 196 (207)
T ss_pred HHHHHHHHHHHhhC-----------CCCEEEEECCCCcc-----hhHHHHHHHhCC-EEEEEEECCCCCHHHHHHHHHHh
Confidence 44555666655554 23999999944332 223445555555 57788888888899999999999
Q ss_pred HhCCCcEEEEEEc
Q 002941 275 KLRGYDVVAVVFE 287 (863)
Q Consensus 275 ~~~~~~v~gvi~n 287 (863)
+ +.++.|+|+|
T Consensus 197 ~--~~~~~G~v~N 207 (207)
T TIGR03018 197 E--SCKVLGVVLN 207 (207)
T ss_pred c--CCCeEEEEeC
Confidence 8 7899999998
No 380
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=97.88 E-value=0.00045 Score=74.85 Aligned_cols=86 Identities=19% Similarity=0.207 Sum_probs=64.3
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCC----CCC---C
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH----GLV---N 293 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~----~~~---~ 293 (863)
.|++||+. -|+ .+...+.+++.+---+|+|+....-....+..+++.+++-+.+|+|||.|.. ... .
T Consensus 167 ~D~vIID~-----PP~-~g~~d~~i~~~~~~g~viVt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~~~~~~~~~g~ 240 (265)
T COG0489 167 YDYVIIDT-----PPG-TGDADATVLQRIPDGVVIVTTPGKTALEDVKKAIDMLEKAGIPVLGVVENMSYFICPRCGEGG 240 (265)
T ss_pred CCEEEEeC-----CCC-chHHHHHHHhccCCeEEEEeCCccchHHHHHHHHHHHHhcCCceEEEEecCccCcccccCCCc
Confidence 49999998 454 4455677777776689999999999999999999999999999999999944 212 2
Q ss_pred HHHHHHhhcCCCCeee-cCCCCC
Q 002941 294 EVPLMSYLRNRVPVLV-LPPLPQ 315 (863)
Q Consensus 294 ~~~~~~~~~~~~pvl~-~p~~~~ 315 (863)
.+..-+++ + |++| +|..+.
T Consensus 241 ~~~~~~~~--~-~~~g~~p~~~~ 260 (265)
T COG0489 241 GEKYAERY--G-PYLGSIPLDPS 260 (265)
T ss_pred hhhHHHHh--c-cccccCCCChh
Confidence 33333332 2 7888 776554
No 381
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=97.86 E-value=0.00068 Score=82.04 Aligned_cols=313 Identities=16% Similarity=0.152 Sum_probs=157.1
Q ss_pred ChHHHHHHHHHHhhcCCCCCCeEEEeCChh-hHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCc
Q 002941 442 YEPALECAELLLQGVGKGWASRAYFSDNGS-TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (863)
Q Consensus 442 ~~~~~eLae~L~~~~p~~~~~~v~f~~SGS-eAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t 520 (863)
+.+..+..+..++.++ .++.+|..+|| .+|.+++..+. + +.+.|.++...|=+-
T Consensus 194 ~G~i~eAe~~AA~~fg---Ad~tyfvvNGTS~~n~av~~a~~-----------~-----------~Gd~VLvdRN~HKSv 248 (714)
T PRK15400 194 SGPHKEAEEYIARVFN---ADRSYMVTNGTSTANKIVGMYSA-----------P-----------AGSTVLIDRNCHKSL 248 (714)
T ss_pred ChHHHHHHHHHHHHhC---CCcEEEEeCchHHHHHHHHHHhc-----------C-----------CCCEEEeecccHHHH
Confidence 3455555566666777 57888888885 46665554441 1 145677888888887
Q ss_pred cccceecC-CCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 521 LGAMEAQA-PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 521 ~gals~t~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
..++.++| .+.|-.+. +...|... ++|. .++.
T Consensus 249 ~haLilsga~PVYl~P~----rn~~Gi~g--------------~I~~---------------------------~~~~-- 281 (714)
T PRK15400 249 THLMMMSDVTPIYFRPT----RNAYGILG--------------GIPQ---------------------------SEFQ-- 281 (714)
T ss_pred HHHHHHcCCeEEEeccc----ccccCCcc--------------CCCc---------------------------cccC--
Confidence 77777765 33332110 00001000 0000 0000
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch-hhh-
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADL- 677 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a-~e~- 677 (863)
.+.+++.+++.-.. ...+++||.-|. -.|+..- ++.+.++|+.++ +++||+|-|.-+....+. ...
T Consensus 282 -~e~i~~~i~~~p~a--k~p~~~vit~pT---YdG~~yd----~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam 349 (714)
T PRK15400 282 -HATIAKRVKETPNA--TWPVHAVITNST---YDGLLYN----TDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGM 349 (714)
T ss_pred -HHHHHHHHHhCccc--cCccEEEEECCC---CccEecC----HHHHHHHhCCCC--EEEEccchhhhccCcccCCcChh
Confidence 14456666541100 112368999895 3566554 788899998888 689999976655544332 111
Q ss_pred -cCCCC-c--EEEec--cccCCCCCCceeee-ccHHHH-HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC---h
Q 002941 678 -LGCVP-D--IACYG--KLLTGGVIPLAATL-ATNAVF-DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD---P 746 (863)
Q Consensus 678 -~gv~P-D--ivt~s--KgLggG~~Pigav~-~~~~i~-~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~---~ 746 (863)
.|-.+ | ++|=| |-|++ +..++.+ .+..+- +.|.. .+..-.|.+.+=+-+|+.-.+..+++. .
T Consensus 350 ~~ga~~~~~i~vtQStHKtL~a--lTQaS~LHvkg~vd~~~~n~-----a~~m~~STSPsY~l~ASLD~a~~~m~~~~G~ 422 (714)
T PRK15400 350 SGGRVEGKVIYETQSTHKLLAA--FSQASMIHVKGDVNEETFNE-----AYMMHTTTSPHYGIVASTETAAAMMKGNAGK 422 (714)
T ss_pred hcCCCCCCceEEEEchhhcccc--hhHHhHHHHcCCCCHHHHHH-----HHHHHcCCCcHHHHHHHHHHHHHHHHhhhhH
Confidence 22222 4 66655 76654 2222222 211110 11111 122233445555555555555555643 2
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHhc-C-CCeeEec--------------------ccceE-----------EEEEEcc
Q 002941 747 QTNHNIIPERRILRELWDLELIQQISS-H-RTVQRVV--------------------ALGTL-----------CAIELQA 793 (863)
Q Consensus 747 ~l~~~l~~~~~~l~~~l~~~l~~~~~~-~-p~v~~vr--------------------g~Gl~-----------~~iel~~ 793 (863)
.+.++..+.+..+++.+. +. .. . +....+. |.+.+ +.|....
T Consensus 423 ~l~~~~i~~a~~~R~~l~----~~-~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~Klti~tpg 497 (714)
T PRK15400 423 RLINGSIERAIKFRKEIK----RL-RTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPG 497 (714)
T ss_pred HHHHHHHHHHHHHHHHHH----hC-CCcccCceEEecChhhcccchhcccCccccccCcccccccccccCCceEEEEeCC
Confidence 344555555555554332 11 10 0 0000000 10000 0010100
Q ss_pred CCcCCCC--chHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 794 AGCNAGY--GSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 794 ~~~~~~~--~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
-+....+ ..-.+..+.+.|.++||.+--.+ +.+.|..++..|+++++.++++|.+.-
T Consensus 498 i~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d~~~iLfl~s~g~t~~~~~~L~~aL~~f~ 557 (714)
T PRK15400 498 MKKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFK 557 (714)
T ss_pred CCCCccccccCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 0000000 01125567888999999997654 777788888999999999999887653
No 382
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=97.84 E-value=0.00019 Score=81.81 Aligned_cols=230 Identities=15% Similarity=0.136 Sum_probs=124.1
Q ss_pred ChHHHHHHHHHHhhcCCCCCCeEEEeCChhh-HHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCc
Q 002941 442 YEPALECAELLLQGVGKGWASRAYFSDNGST-AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (863)
Q Consensus 442 ~~~~~eLae~L~~~~p~~~~~~v~f~~SGSe-AvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t 520 (863)
..+..+..+.+++.+| .++.||...||. +|.+++..+. + +.+.|.++.+-|=+.
T Consensus 65 ~G~I~eAe~~aA~~fG---Ad~t~flvnGsT~g~~a~i~a~~-----------~-----------~gd~VLv~RN~HkSv 119 (417)
T PF01276_consen 65 EGIIKEAEELAARAFG---ADKTFFLVNGSTSGNQAMIMALC-----------R-----------PGDKVLVDRNCHKSV 119 (417)
T ss_dssp BTHHHHHHHHHHHHHT---ESEEEEESSHHHHHHHHHHHHHT-----------T-----------TTCEEEEETT--HHH
T ss_pred ccHHHHHHHHHHHhcC---CCeEEEEecCchHHHHHHHHHhc-----------C-----------CCCEEEEcCCcHHHH
Confidence 4456666677777888 578888777766 6666665552 1 134677777788888
Q ss_pred cccceecC-CCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 521 LGAMEAQA-PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 521 ~gals~t~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
..++-+++ .+.|- .|. . ...|+. .+++. .++.
T Consensus 120 ~~alil~ga~Pvyi---------------~p~-~-~~~gi~-~~i~~---------------------------~~~~-- 152 (417)
T PF01276_consen 120 YNALILSGAIPVYI---------------PPE-D-NEYGII-GGISP---------------------------DEFN-- 152 (417)
T ss_dssp HHHHHHHTEEEEEE---------------EEE-E--TTS-B-EEB-G---------------------------GGGS--
T ss_pred HHHHHHcCCeEEEe---------------cCC-c-cccCCc-cCCCh---------------------------hhhh--
Confidence 88887765 22221 110 0 000000 00000 0111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEE---EEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhh
Q 002941 600 YSSYISQNLLQNPGLKVSGCIG---ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iA---AvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e 676 (863)
.+.+++.+++ +++.-+ +||+-|- -.|+... +++|.++|+++++.|++||+|.+.-+.. .+--.
T Consensus 153 -~~~i~~~l~~-----~p~~k~~~~vvlt~PT---Y~Gv~~d----i~~I~~~~h~~~~~llvDEAhGah~~F~-~lp~~ 218 (417)
T PF01276_consen 153 -EEDIEEALKE-----HPDAKAPRLVVLTSPT---YYGVCYD----IKEIAEICHKHGIPLLVDEAHGAHFGFH-PLPRS 218 (417)
T ss_dssp -HHHHHHHHHH-----CTTCHCESEEEEESS----TTSEEE-----HHHHHHHHCCTECEEEEE-TT-TTGGCS-GGGTT
T ss_pred -HHHHHHHHHh-----CccccCceEEEEeCCC---CCeEEEC----HHHHHHHhcccCCEEEEEccccccccCC-CCccc
Confidence 1456677764 344434 8888885 4677776 9999999999999999999996543333 22223
Q ss_pred hcCCCCc-------EEEec--cccCCCCCCceeeeccHHH---HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc
Q 002941 677 LLGCVPD-------IACYG--KLLTGGVIPLAATLATNAV---FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK 744 (863)
Q Consensus 677 ~~gv~PD-------ivt~s--KgLggG~~Pigav~~~~~i---~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~ 744 (863)
.+..-.| ++|-| |.|++ +-.-|.+..+.+- .+.+.. .+....|.+.+-+-+|..-.+.++++
T Consensus 219 a~~~gad~~~~~~~~vvqS~HKtL~a-ltQts~lh~~~~~~v~~~~~~~-----~l~~~~TTSPSY~lmASlD~a~~~m~ 292 (417)
T PF01276_consen 219 ALALGADRPNDPGIIVVQSTHKTLPA-LTQTSMLHVKGDRIVDHERVNE-----ALSMHQTTSPSYPLMASLDVARAQME 292 (417)
T ss_dssp CSSTTSS-CTSBEEEEEEEHHHHSSS--TT-EEEEEETCCCTTHHHHHH-----HHHHHS-SS--HHHHHHHHHHHHHHS
T ss_pred hhhccCccccccceeeeechhhcccc-cccceEEEecCCCcccHHHHHH-----HHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 3455667 88877 77665 1223334343331 122221 12233566666666666666666662
Q ss_pred -C--hhhHHhHHHHHHHHHHHH
Q 002941 745 -D--PQTNHNIIPERRILRELW 763 (863)
Q Consensus 745 -~--~~l~~~l~~~~~~l~~~l 763 (863)
+ ..+.+++.+.+..+++.+
T Consensus 293 ~~~G~~l~~~~i~~a~~~R~~i 314 (417)
T PF01276_consen 293 EEEGRELLEEAIELAEEFRKKI 314 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 2 235566666666666544
No 383
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=97.80 E-value=0.021 Score=62.05 Aligned_cols=215 Identities=15% Similarity=0.111 Sum_probs=127.4
Q ss_pred CCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCC
Q 002941 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGG 694 (863)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG 694 (863)
.+++|.|++.-| +--.|-... +.+|-+++.+||++++.|=+|+. |-. ..+..+--.|.- |-=|=|.||
T Consensus 164 ~dd~AvV~L~~V-~y~TGql~d----m~aiT~~AH~~galv~wDLAHsa-Gav----p~~Lh~~gaDfaigcsyKYLNgG 233 (407)
T COG3844 164 TDDVAVVLLSHV-NYKTGQLLD----MRAITALAHQHGALVGWDLAHSA-GAV----PVDLHAAGADFAIGCSYKYLNGG 233 (407)
T ss_pred ccceEEEEeccc-cccccceee----HHHHHHHHHhcCceEEeehhccc-CCc----ceeecccCCCeeeeeeceeccCC
Confidence 468999999987 777887776 89999999999999999999962 211 112112223432 344656543
Q ss_pred CCCceeeeccHHHHHhhhcC-C----ccceeecccCC------------CccHHHHHHHHHHHHHhcChhhHHhHHHHHH
Q 002941 695 VIPLAATLATNAVFDSFVGD-S----KLKALLHGHSY------------SAHALGCAAAAKSIKWFKDPQTNHNIIPERR 757 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~-~----~~~~~~~~~T~------------~~~pla~AAalAaL~~l~~~~l~~~l~~~~~ 757 (863)
==..+.+.+.++..+..... + ..++|.....| ...-+++++-..+|++..+-+ +..++++.-
T Consensus 234 PGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~-i~~lR~kSl 312 (407)
T COG3844 234 PGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVD-ITELRKKSL 312 (407)
T ss_pred CCCceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcC-HHHHHHhhh
Confidence 11223333333333322110 0 00111111111 123457777788899886544 567777777
Q ss_pred HHHHHHHHHHHHHHhcCCC-eeEe---cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEEecCC
Q 002941 758 ILRELWDLELIQQISSHRT-VQRV---VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGP 832 (863)
Q Consensus 758 ~l~~~l~~~l~~~~~~~p~-v~~v---rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~~ppl 832 (863)
.|.+++.+-+......+++ +... .-+|.-+++... .+..+.+.|.++||+.-.. .+.+||.|.+
T Consensus 313 aLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp-----------~~~~V~qaLi~rGVigD~R~P~vlRfgftP 381 (407)
T COG3844 313 ALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHP-----------HGYQVMQALIDRGVIGDFREPDVLRFGFTP 381 (407)
T ss_pred HHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecC-----------cHHHHHHHHHHcCccccccCCCeeeecCcc
Confidence 7777664433222222332 1111 113333333332 4678999999999988543 4889987755
Q ss_pred -CCcHHHHHHHHHHHHHHHHHH
Q 002941 833 -CSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 833 -~~t~eeid~~v~~L~~~l~~l 853 (863)
..+-+|+=.+|+.|+++++.+
T Consensus 382 lY~~~~DVw~AV~~L~evL~t~ 403 (407)
T COG3844 382 LYVSFVDVWDAVDALEEVLDTL 403 (407)
T ss_pred ceechhHHHHHHHHHHHHHHhh
Confidence 478899999999999998865
No 384
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=97.80 E-value=0.0051 Score=68.49 Aligned_cols=185 Identities=14% Similarity=0.131 Sum_probs=107.8
Q ss_pred HHHHHHHHHHcCCeEEEecccc-cccccCCcchhhh-cCCCCcEEEe--ccccCCCCCCceeeecc-HHHHHhhhcCCcc
Q 002941 643 QRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADL-LGCVPDIACY--GKLLTGGVIPLAATLAT-NAVFDSFVGDSKL 717 (863)
Q Consensus 643 L~~Lrelc~~~gilLI~DEV~T-GfGRtG~~~a~e~-~gv~PDivt~--sKgLggG~~Pigav~~~-~~i~~~l~~~~~~ 717 (863)
++++|++|++-|+.|++|=+|- |+--.| .++. +. ..|+||- =|.|-|- .-|.++++ +++.+.+...
T Consensus 183 ~~~~reIad~VGA~L~~DmAHiaGLVA~G---~~p~P~~-~AdvVTtTTHKTlrGP--rGG~Il~~~eel~kkin~a--- 253 (413)
T COG0112 183 FKRFREIADEVGAYLMVDMAHVAGLIAGG---VHPNPLP-HADVVTTTTHKTLRGP--RGGIILTNDEELAKKINSA--- 253 (413)
T ss_pred HHHHHHHHHHhCceEEehHHHHHHHHhcc---cCCCCCC-ccceEeCCcccCCCCC--CceEEEeccHHHHHHhhhh---
Confidence 8999999999999999998873 221111 1111 11 2688865 4888752 33457777 4888887752
Q ss_pred ceeecccCCCccHH-HHHHHHHHHHHhcChh---hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc-cceEEEEEEc
Q 002941 718 KALLHGHSYSAHAL-GCAAAAKSIKWFKDPQ---TNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-LGTLCAIELQ 792 (863)
Q Consensus 718 ~~~~~~~T~~~~pl-a~AAalAaL~~l~~~~---l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-~Gl~~~iel~ 792 (863)
. +..+.+|+-+ .+||---++....+++ +..++.+|++.|.+.|.+.. +..|. .| .--++.+++.
T Consensus 254 --V-FPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G------~~vvs--GgTdnHl~lVDl~ 322 (413)
T COG0112 254 --V-FPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERG------FKVVS--GGTDNHLVLVDLR 322 (413)
T ss_pred --c-CCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcC------CeEec--CCccceEEEEEcc
Confidence 1 2233333322 3333222233333443 56778888888877554322 22221 11 1135666666
Q ss_pred cCCcCCCCchHHHHHHHHHHHHCCcEEE----ecC-------CEEEEecCCCC----cHHHHHHHHHHHHHHHHHHH
Q 002941 793 AAGCNAGYGSLYAASLLKKLREDGVYMR----PLG-------NVIYLMCGPCS----SPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 793 ~~~~~~~~~~~~~~~l~~~l~e~GV~~~----p~g-------~~lr~~ppl~~----t~eeid~~v~~L~~~l~~l~ 854 (863)
+.. .........|-+.||.+. |+. ..||+-.|..+ .++|..++-+.+.+++...+
T Consensus 323 ~~~-------~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~~~ 392 (413)
T COG0112 323 SKG-------LTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDGLK 392 (413)
T ss_pred cCC-------CCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhccc
Confidence 321 013445566667788885 222 56788766654 67899999999999988743
No 385
>PRK13578 ornithine decarboxylase; Provisional
Probab=97.80 E-value=0.0024 Score=77.40 Aligned_cols=47 Identities=26% Similarity=0.275 Sum_probs=38.4
Q ss_pred HHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 805 AASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 805 ~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+..+.+.|+++||.+--.+ +.+.+..++..|+++++.++++|.+.-+
T Consensus 517 g~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~Lv~aL~~f~~ 564 (720)
T PRK13578 517 ATILANYLRENGIVPEKCDLNSILFLLTPAEDMAKLQQLVAMLARFEK 564 (720)
T ss_pred HHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 4678888889999997654 6777777889999999999999876644
No 386
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=97.74 E-value=0.001 Score=75.62 Aligned_cols=192 Identities=13% Similarity=0.063 Sum_probs=100.9
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc-cccccCCcchhhhcCCCCcEEEec--cccCCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIACYG--KLLTGGVI 696 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~ 696 (863)
...||+-+- ..+-+.+ +++++++|++.|++|++|=.|. |+ --|..+. .-+. ..|+||.+ |.|.|-
T Consensus 170 PklIi~G~S------~y~~~~d-~~~~reIad~vga~l~~D~sH~~GL-Ia~g~~~-~P~~-~ADvvt~sThKtl~GP-- 237 (399)
T PF00464_consen 170 PKLIICGAS------SYPRPID-FKRFREIADEVGAYLMADISHIAGL-IAGGLFP-NPFP-YADVVTGSTHKTLRGP-- 237 (399)
T ss_dssp -SEEEEE-S------STSS----HHHHHHHHHHTT-EEEEE-TTTHHH-HHTTSS---GCC-TSSEEEEESSGGG-SS--
T ss_pred CCEEEECch------hccCccC-HHHHHHHHHhcCcEEEecccccccc-eehheec-Cccc-cceEEEeecccccccc--
Confidence 345666553 1233333 5999999999999999999986 33 1121111 1122 26999775 999862
Q ss_pred Cceeeecc--------------HHHHHhhhcCCccceeecccCCCc-cHHHHHHHHHHHHHhcCh---hhHHhHHHHHHH
Q 002941 697 PLAATLAT--------------NAVFDSFVGDSKLKALLHGHSYSA-HALGCAAAAKSIKWFKDP---QTNHNIIPERRI 758 (863)
Q Consensus 697 Pigav~~~--------------~~i~~~l~~~~~~~~~~~~~T~~~-~pla~AAalAaL~~l~~~---~l~~~l~~~~~~ 758 (863)
.-|.++++ +++.+.+... ++. ...++ +.-..|+-..+|....++ ++..++.++++.
T Consensus 238 rggiI~~~~~~~~~~~~~~~~~~~l~~~I~~a-----vfP-~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~ 311 (399)
T PF00464_consen 238 RGGIILTNKGSKNVDKKGKEIDEELAEKIDSA-----VFP-GLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKA 311 (399)
T ss_dssp S-EEEEES-SEEEE-TTS-EEEHHHHHHHHHH-----HTT-TT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred CceEEEEcCCccccCCcccccHHHHHHHhccc-----cCC-CcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence 34557777 7888887641 111 22222 233333333344444343 456788888888
Q ss_pred HHHHHHHHHHHHHhcCCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe----c------CCEEE
Q 002941 759 LRELWDLELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----L------GNVIY 827 (863)
Q Consensus 759 l~~~l~~~l~~~~~~~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p----~------g~~lr 827 (863)
|.+.|.+...+++. .| .--++.+++.... .......+.|.+.||++.. . ...+|
T Consensus 312 La~~L~~~G~~v~~--------ggTd~H~vlvd~~~~~-------~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlR 376 (399)
T PF00464_consen 312 LAEALQERGFKVVT--------GGTDNHQVLVDLRSFG-------IDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLR 376 (399)
T ss_dssp HHHHHHHTT-EEGG--------GS-SSSEEEEEGGGGT-------S-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEE
T ss_pred HHHHHhhCCcEEEE--------CCCCCCeEEEEecccc-------cchHHHHHHHHhcCeeecccccCCCCCCCCCCEEE
Confidence 88766443322221 11 1135566665421 1245667788899999963 2 25788
Q ss_pred EecCCCC----cHHHHHHHHH
Q 002941 828 LMCGPCS----SPEVCSQLLL 844 (863)
Q Consensus 828 ~~ppl~~----t~eeid~~v~ 844 (863)
+-.+..+ .++|+.++-+
T Consensus 377 lGT~~lT~rG~~e~dm~~iA~ 397 (399)
T PF00464_consen 377 LGTPALTRRGMKEEDMKEIAE 397 (399)
T ss_dssp EESHHHHHTT--HHHHHHHHH
T ss_pred ECCHHHHhCCCCHHHHHHHHh
Confidence 8755443 5566655544
No 387
>PRK05367 glycine dehydrogenase; Provisional
Probab=97.73 E-value=0.004 Score=78.49 Aligned_cols=202 Identities=16% Similarity=0.090 Sum_probs=110.1
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--c---ccCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--K---LLTG 693 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--K---gLgg 693 (863)
+++++++-= .+..|.+.+ +++|.++|+++|+++++|=.+...+.. + .-.. .-.|+++.+ | .+|.
T Consensus 206 ~~~~vlvq~--p~~~G~i~d----~~~i~~~ah~~Gal~~vda~~~Al~~l-~--~pge--~GaDi~vgs~qkfg~P~g~ 274 (954)
T PRK05367 206 DVFGVLLQY--PGTSGEVRD----YTALIAAAHARGALVAVAADLLALTLL-T--PPGE--MGADIAVGSAQRFGVPMGF 274 (954)
T ss_pred cEEEEEEec--CCCCeeecc----HHHHHHHHHHcCCEEEEEehhhhccCC-C--Chhh--cCCCEEEeeCcccCCCCCC
Confidence 566654432 356787775 999999999999999999755322111 1 1122 235777552 3 2232
Q ss_pred CCCC-ceeeeccHHHHHhhhcCC-cc-------ceee------------cccCCC-ccHHHHHHHHHH--HHHhcChhhH
Q 002941 694 GVIP-LAATLATNAVFDSFVGDS-KL-------KALL------------HGHSYS-AHALGCAAAAKS--IKWFKDPQTN 749 (863)
Q Consensus 694 G~~P-igav~~~~~i~~~l~~~~-~~-------~~~~------------~~~T~~-~~pla~AAalAa--L~~l~~~~l~ 749 (863)
| =| .|++.+++++.+.+...- .+ ..+. -..|.. ....+..++++. +.++...+ .
T Consensus 275 G-GP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~G-l 352 (954)
T PRK05367 275 G-GPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEG-L 352 (954)
T ss_pred C-CCCEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhh-H
Confidence 2 13 566778888877764210 00 0000 000111 112222333333 24343333 3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEE
Q 002941 750 HNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYL 828 (863)
Q Consensus 750 ~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~ 828 (863)
+++.++...+..++.++|.+ .....+.... .+ .+.+.+. . .+.++.++|.++||.++.. ++.+++
T Consensus 353 ~~Ia~~~~~la~~l~~~L~~--~G~~~~~~~~-f~-~~~~~~~-~---------~~~~i~~~l~~~gi~~~~~~~~~l~i 418 (954)
T PRK05367 353 KAIARRVHRLAAILAAGLRA--LGLEVVHDSF-FD-TLTVEVG-G---------DAAAVLARALAAGINLRRVDDDHVGI 418 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHh--cCcccCCCCC-CC-eEEEeCC-C---------CHHHHHHHHHHCCceeccccCCEEEE
Confidence 34445555555554444322 1122111110 11 2223321 1 2567999999999999766 578999
Q ss_pred ecCCCCcHHHHHHHHHHHH
Q 002941 829 MCGPCSSPEVCSQLLLKLY 847 (863)
Q Consensus 829 ~ppl~~t~eeid~~v~~L~ 847 (863)
+|....|++|||.++++|.
T Consensus 419 s~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 419 SLDETTTREDLAALLAVFG 437 (954)
T ss_pred EecccCCHHHHHHHHHHHc
Confidence 9999999999999999997
No 388
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.67 E-value=0.0019 Score=65.32 Aligned_cols=84 Identities=20% Similarity=0.258 Sum_probs=59.1
Q ss_pred CCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCC--CHHHH
Q 002941 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV--NEVPL 297 (863)
Q Consensus 220 ~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~--~~~~~ 297 (863)
.+|++||.+.+|+.. .........+ -+|+|+.....++..+...++.++..+.++ ++|+|++... ....+
T Consensus 92 ~~d~viiDtpp~~~~------~~~~~l~~aD-~vliv~~~~~~~~~~~~~~~~~l~~~~~~~-~vV~N~~~~~~~~~~~~ 163 (179)
T cd03110 92 GAELIIIDGPPGIGC------PVIASLTGAD-AALLVTEPTPSGLHDLERAVELVRHFGIPV-GVVINKYDLNDEIAEEI 163 (179)
T ss_pred CCCEEEEECcCCCcH------HHHHHHHcCC-EEEEEecCCcccHHHHHHHHHHHHHcCCCE-EEEEeCCCCCcchHHHH
Confidence 459999999877532 2223333333 367788888889999988999998888775 8999998432 23345
Q ss_pred HHhhc-CCCCeee-cC
Q 002941 298 MSYLR-NRVPVLV-LP 311 (863)
Q Consensus 298 ~~~~~-~~~pvl~-~p 311 (863)
+++++ .++||+| ||
T Consensus 164 ~~~~~~~~~~vl~~ip 179 (179)
T cd03110 164 EDYCEEEGIPILGKIP 179 (179)
T ss_pred HHHHHHcCCCeEEeCC
Confidence 55554 3899999 87
No 389
>PLN02452 phosphoserine transaminase
Probab=97.64 E-value=0.0054 Score=69.59 Aligned_cols=177 Identities=8% Similarity=-0.019 Sum_probs=110.1
Q ss_pred CeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCC-ceeeeccHHHHHhhhcCCc-cce----eecccCC-C
Q 002941 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIP-LAATLATNAVFDSFVGDSK-LKA----LLHGHSY-S 727 (863)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~P-igav~~~~~i~~~l~~~~~-~~~----~~~~~T~-~ 727 (863)
+++|+|=+++ +| +...-.+.+|+ |+..-=|.+| -| +|.+++++++.+......+ ... ....+++ +
T Consensus 171 ~~lvVDa~Ss-~g--~~pidv~~~~v--~~~saqK~lG---P~Gl~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~T 242 (365)
T PLN02452 171 VPLVADMSSN-FL--SKPVDVSKYGV--IYAGAQKNVG---PSGVTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNT 242 (365)
T ss_pred CeEEEECCcc-cc--CcccCHHHcCE--EEEecccccC---CCCeEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCC
Confidence 8999998885 42 33455566665 5555569884 33 7889999999876543211 000 0122333 4
Q ss_pred ccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe-eE-e--c-ccceEEEEEEccCCcCCCCch
Q 002941 728 AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV-QR-V--V-ALGTLCAIELQAAGCNAGYGS 802 (863)
Q Consensus 728 ~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v-~~-v--r-g~Gl~~~iel~~~~~~~~~~~ 802 (863)
.+-.++.+..++|+++++++=.+.+.++.+.+.+.+.+.+ ++.+.+ .. + . .....+.+.+.+..
T Consensus 243 P~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l----~~~~G~y~~~~~~~~rs~~~vsF~~~~~~------- 311 (365)
T PLN02452 243 PPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAI----DESNGFYVCPVEKSVRSLMNVPFTLGGSE------- 311 (365)
T ss_pred hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH----HhCCCcccCCCChHHhCCeEEEEEcCCch-------
Confidence 4566778888999998764225566666666666554443 333211 11 1 1 12334555554321
Q ss_pred HHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 803 LYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 803 ~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
...+|.+.+.++|++..++. ..+|+..=-.++.++++.+++.+++.-+
T Consensus 312 -~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~yna~~~~~v~~L~~~m~~f~~ 362 (365)
T PLN02452 312 -LEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQA 362 (365)
T ss_pred -hHHHHHHHHHHCCCcccCCccccCceEEECcCCCCHHHHHHHHHHHHHHHH
Confidence 56789999999999987642 3388875456899999999998887654
No 390
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.62 E-value=0.00017 Score=76.09 Aligned_cols=44 Identities=9% Similarity=0.094 Sum_probs=39.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCC
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH 86 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~ 86 (863)
|+.+.|+|. +++|||+++..|++.|+ ++|++|++.|+..++.+.
T Consensus 1 m~vi~ivG~-~gsGKTtl~~~l~~~L~-----~~G~~V~viK~~~~~~d~ 44 (229)
T PRK14494 1 MRAIGVIGF-KDSGKTTLIEKILKNLK-----ERGYRVATAKHTHHEFDK 44 (229)
T ss_pred CeEEEEECC-CCChHHHHHHHHHHHHH-----hCCCeEEEEEecccCCCC
Confidence 678999999 89999999999999999 899999999998776543
No 391
>PRK11670 antiporter inner membrane protein; Provisional
Probab=97.60 E-value=0.0012 Score=74.86 Aligned_cols=88 Identities=11% Similarity=0.064 Sum_probs=58.3
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhcCCC-EEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCC-------
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLP-GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV------- 292 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l~~p-vilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~------- 292 (863)
+|++||...-|+ +.....++..+-+. +|+|.....-++..+..+++.+.+.++++.|+|+|.....
T Consensus 216 yDyvIID~PPg~------gd~~l~~~~l~aad~viiV~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~~~~~~~~~~ 289 (369)
T PRK11670 216 LDYLVLDMPPGT------GDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHH 289 (369)
T ss_pred CCEEEEeCCCCC------chHHHHHhhhccCCeEEEEecCchhHHHHHHHHHHHHhccCCCeEEEEEcCCccccCCccch
Confidence 499999994332 22233334433333 6777777777778888888888888999999999975211
Q ss_pred -------CHHHHHHhhcCCCCeee-cCCCCCC
Q 002941 293 -------NEVPLMSYLRNRVPVLV-LPPLPQD 316 (863)
Q Consensus 293 -------~~~~~~~~~~~~~pvl~-~p~~~~~ 316 (863)
..+.+.+. -++|+++ ||....+
T Consensus 290 ~~if~~~~~~~lae~--~~~~ll~~IP~~~~I 319 (369)
T PRK11670 290 EPIFGTGGAEKLAEK--YHTQLLGQMPLHISL 319 (369)
T ss_pred hhhcccchHHHHHHH--cCCcEEEEeCCChHH
Confidence 12333333 3789999 8887664
No 392
>PRK11519 tyrosine kinase; Provisional
Probab=97.58 E-value=0.0007 Score=83.45 Aligned_cols=77 Identities=12% Similarity=0.113 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHH
Q 002941 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (863)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~ 274 (863)
+++.+.++.+.++| |+|||.+ .|+..-....-+++..+.. |+|+..+.-....+..+++.+
T Consensus 623 ~~~~~ll~~l~~~y-------------D~ViiDt-----pP~~~v~Da~~l~~~~d~~-l~Vvr~~~t~~~~~~~~~~~l 683 (719)
T PRK11519 623 ERFAELVNWASKNY-------------DLVLIDT-----PPILAVTDAAIVGRHVGTT-LMVARYAVNTLKEVETSLSRF 683 (719)
T ss_pred HHHHHHHHHHHhcC-------------CEEEEeC-----CCcccchHHHHHHHHCCeE-EEEEeCCCCCHHHHHHHHHHH
Confidence 34555566666666 9999999 4443333445577777765 577777777788888999999
Q ss_pred HhCCCcEEEEEEcCCC
Q 002941 275 KLRGYDVVAVVFEDHG 290 (863)
Q Consensus 275 ~~~~~~v~gvi~n~~~ 290 (863)
++.|.++.|+|+|++.
T Consensus 684 ~~~~~~~~G~VlN~v~ 699 (719)
T PRK11519 684 EQNGIPVKGVILNSIF 699 (719)
T ss_pred HhCCCCeEEEEEeCCc
Confidence 9999999999999883
No 393
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=97.56 E-value=0.00099 Score=73.38 Aligned_cols=91 Identities=16% Similarity=0.176 Sum_probs=55.4
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCC---cHHHHHHHHHHHHhCC--CcEEEEEEcCCCCC-CH
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLG---GISGTISAYESLKLRG--YDVVAVVFEDHGLV-NE 294 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g---~i~~~~~~~~~~~~~~--~~v~gvi~n~~~~~-~~ 294 (863)
+|++||...|++.++..........| =-||+|+....- +.+.+..+++.++..| +++.|||+|+.... ..
T Consensus 123 yD~IliD~~~~~~~~g~~~~~a~~~A----d~viVvt~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~~~~ 198 (296)
T TIGR02016 123 FDFVLMDFLGDVVCGGFATPLARSLA----EEVIVIGSNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGSGEA 198 (296)
T ss_pred CCEEEEecCCCccccccccchhhhhC----CeEEEEecchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCccHH
Confidence 49999998665422210001111111 135666665533 4466777777777654 78999999998432 22
Q ss_pred HHHHHhhcCCCCeee-cCCCCCCC
Q 002941 295 VPLMSYLRNRVPVLV-LPPLPQDS 317 (863)
Q Consensus 295 ~~~~~~~~~~~pvl~-~p~~~~~~ 317 (863)
+.+.+. .++|+++ ||+.+.+.
T Consensus 199 ~~~~~~--~~i~vLg~IP~d~~i~ 220 (296)
T TIGR02016 199 QAFARE--VGIPVLAAIPADEELR 220 (296)
T ss_pred HHHHHH--cCCCeEEECCCCHHHH
Confidence 333333 4899999 99987764
No 394
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=97.55 E-value=0.0012 Score=81.47 Aligned_cols=77 Identities=17% Similarity=0.105 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHH
Q 002941 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (863)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~ 274 (863)
+++.+.+.++..+| |+|||.+. |+.......-++...+ -+|+|+..+.-....+..+++.+
T Consensus 628 ~~~~~ll~~l~~~y-------------D~IIIDtP-----P~~~~~Da~~la~~ad-~~llVvr~~~t~~~~~~~~~~~l 688 (726)
T PRK09841 628 DRMRQLLEWANDHY-------------DLVIVDTP-----PMLAVSDAAVVGRSVG-TSLLVARFGLNTAKEVSLSMQRL 688 (726)
T ss_pred HHHHHHHHHHHhcC-------------CEEEEeCC-----CccccchHHHHHHhCC-eEEEEEeCCCCCHHHHHHHHHHH
Confidence 35555566666666 99999994 4322222344454444 46788888888899999999999
Q ss_pred HhCCCcEEEEEEcCCC
Q 002941 275 KLRGYDVVAVVFEDHG 290 (863)
Q Consensus 275 ~~~~~~v~gvi~n~~~ 290 (863)
.+.|.++.|+|+|++.
T Consensus 689 ~~~~~~~~G~VlN~~~ 704 (726)
T PRK09841 689 EQAGVNIKGAILNGVI 704 (726)
T ss_pred HhCCCceEEEEEeCcc
Confidence 9999999999999873
No 395
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=97.53 E-value=0.0095 Score=67.74 Aligned_cols=211 Identities=11% Similarity=0.103 Sum_probs=117.4
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHH-cCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQN-RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVI 696 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~-~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~ 696 (863)
+..+-.|.. .|+..| + .+++++ +++++|+|=|= +|| |..+-.+ ..|+++.| |+|++- -
T Consensus 131 v~~vhnETS----TGv~np----v---~~i~~~~~~~lliVDavS-s~g--~~~l~~d----~iDv~~tgsQK~L~~p-p 191 (374)
T TIGR01365 131 VVFTWNGTT----SGVRVP----N---GDFIPADREGLTICDATS-AAF--AQDLDYH----KLDVVTFSWQKVLGGE-G 191 (374)
T ss_pred EEEecCCCc----hheecc----c---cccccccCCCcEEEEccc-hhc--CCCCChh----HCcEEEEechhccCCC-C
Confidence 555555653 566665 2 344444 58999999665 453 3333333 27888775 999842 1
Q ss_pred CceeeeccHHHHHhhhcCCcc----c------------eeecccCCCc-cHHHHHHHHHHHHHhcChhhHHhHHHHHHHH
Q 002941 697 PLAATLATNAVFDSFVGDSKL----K------------ALLHGHSYSA-HALGCAAAAKSIKWFKDPQTNHNIIPERRIL 759 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~----~------------~~~~~~T~~~-~pla~AAalAaL~~l~~~~l~~~l~~~~~~l 759 (863)
-+|.++.+++..+........ . ....+.|... +-.+.-+++.+|+.+++++=+++..++.+++
T Consensus 192 Gls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~ 271 (374)
T TIGR01365 192 AHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDN 271 (374)
T ss_pred ceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 256788898888765531110 0 0011234333 3345556677777765542245556666666
Q ss_pred HHHHHHHHHHHHhcCCCee---EecccceEEEEEEccCCc---CCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEE
Q 002941 760 RELWDLELIQQISSHRTVQ---RVVALGTLCAIELQAAGC---NAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYL 828 (863)
Q Consensus 760 ~~~l~~~l~~~~~~~p~v~---~vrg~Gl~~~iel~~~~~---~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~ 828 (863)
.+.+.+.+.++ ....... ..|. -....+.+..+.. ...+.-.....+.+.|.++|+.+.++ |+.+||
T Consensus 272 a~~l~~~l~~l-g~l~~~~~~~~~rS-~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~fRI 349 (374)
T TIGR01365 272 LAVLEAFVAKN-NWIHFLAETPEIRS-NTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGSYRDAPSGLRI 349 (374)
T ss_pred HHHHHHHHHHC-CCcccCCCChhhcC-CCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEeccccccCCCceEE
Confidence 66554443321 1011111 1222 2234444432210 00011112567889999999988753 378898
Q ss_pred ecCCCCcHHHHHHHHHHHHHHHH
Q 002941 829 MCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 829 ~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.---.++++|++.+++.|+-+..
T Consensus 350 g~~G~i~~~di~~l~~~l~~~~~ 372 (374)
T TIGR01365 350 WCGATVEKSDLECLCPWLDWAFA 372 (374)
T ss_pred ecCCcCCHHHHHHHHHHHHHHHh
Confidence 75556899999999999987654
No 396
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=97.50 E-value=0.028 Score=70.89 Aligned_cols=203 Identities=13% Similarity=0.103 Sum_probs=107.6
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe-cccc----C
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY-GKLL----T 692 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~-sKgL----g 692 (863)
+.++++++-= .+..|.+.+ +++|.++|+++|+++|+ -++ .++-++-- .-..+ -.|+++. +.-+ |
T Consensus 233 ~~v~~vlvq~--P~~~G~v~d----v~~I~~~ah~~GaL~iV-aad-~lal~~l~-~pge~--GADi~vgsgqKwg~P~G 301 (993)
T PLN02414 233 GDVCGVLVQY--PATDGEVLD----YAEFVKNAHANGVKVVM-ATD-LLALTMLK-PPGEW--GADIVVGSAQRFGVPMG 301 (993)
T ss_pred CceEEEEEec--CCCCeEEcC----HHHHHHHHHHcCCEEEE-EEC-HHHhcCCC-CHhhc--cCcEEEECCCccccCCC
Confidence 3566666422 245788876 89999999999999999 222 23222211 12222 3588765 2322 2
Q ss_pred -CCCCCceeeeccHHHHHhhhcC-------Ccc-cee--------ecc--cCCCccHH---HHHHHHHHH--HHhcChhh
Q 002941 693 -GGVIPLAATLATNAVFDSFVGD-------SKL-KAL--------LHG--HSYSAHAL---GCAAAAKSI--KWFKDPQT 748 (863)
Q Consensus 693 -gG~~Pigav~~~~~i~~~l~~~-------~~~-~~~--------~~~--~T~~~~pl---a~AAalAaL--~~l~~~~l 748 (863)
|| --.|.+.+++++.+.+... ... ..+ .|. -..+.|.- +..++++++ .++-..+
T Consensus 302 ~GG-P~aGflavr~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~G- 379 (993)
T PLN02414 302 YGG-PHAAFLATSQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEG- 379 (993)
T ss_pred CCC-CCeeEEEECHHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhcccc-
Confidence 34 2267778888887754320 000 000 000 00012332 333333332 2222222
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEE
Q 002941 749 NHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIY 827 (863)
Q Consensus 749 ~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr 827 (863)
.+++.++...+..++.++|.+ . ....+.. .-.+ .+.+.+ +. ..++.++|.++||.++.. ++.++
T Consensus 380 l~~Ia~ri~~la~~l~~~L~~-~-G~~~~~~-~~f~-~vt~~~--~~---------~~~v~~~L~~~gI~l~~~~~~~lr 444 (993)
T PLN02414 380 LKTIAQRVHGLAGVFAAGLKK-L-GFQVQSL-PFFD-TVKVKC--SD---------ADAIADAAAKVGINLRVVDANTVT 444 (993)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-c-CCccCCC-CCcC-eEEEec--CC---------HHHHHHHHHHCCCeeEEecCCeEE
Confidence 234444444555544444322 1 1211111 1111 222332 11 357889999999998865 57899
Q ss_pred EecCCCCcHHHHHHHHHHHHH
Q 002941 828 LMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 828 ~~ppl~~t~eeid~~v~~L~~ 848 (863)
+++....|++|||.++++|..
T Consensus 445 vs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 445 VSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred EEeeccCCHHHHHHHHHHHcc
Confidence 999999999999999999963
No 397
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=97.45 E-value=0.0018 Score=69.75 Aligned_cols=64 Identities=25% Similarity=0.183 Sum_probs=48.8
Q ss_pred CEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCCC---HHH--------------HHHhhcCCCCeeecCCCC
Q 002941 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVN---EVP--------------LMSYLRNRVPVLVLPPLP 314 (863)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~~---~~~--------------~~~~~~~~~pvl~~p~~~ 314 (863)
-+++|+....-++..+..+++.++..|+++.|+|+|++...+ ... +++.+ .+.|+..+|..+
T Consensus 162 ~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~~~~~~~~~~~~~~~q~~~l~~~~~~~-~~~~i~~vp~~~ 240 (254)
T cd00550 162 SFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEELF-SDLPVAKLPLLP 240 (254)
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcccccCCCHHHHHHHHHHHHHHHHHHHHh-cCCCEEEeecCC
Confidence 489999999999999999999999999999999999883321 111 11111 367888898877
Q ss_pred CC
Q 002941 315 QD 316 (863)
Q Consensus 315 ~~ 316 (863)
.-
T Consensus 241 ~e 242 (254)
T cd00550 241 EE 242 (254)
T ss_pred CC
Confidence 64
No 398
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=97.39 E-value=0.013 Score=65.40 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=65.8
Q ss_pred ChhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHH
Q 002941 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (863)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (863)
..+.+.+.++.+.+.| |++||...+++. .....+....+. +|+|+....-++..+...++
T Consensus 190 ~~~~l~~~l~~l~~~~-------------D~VIID~p~~~~------~~~~~~L~~AD~-vliV~~~~~~sl~~a~r~l~ 249 (322)
T TIGR03815 190 PPAAVRAVLDAARRGG-------------DLVVVDLPRRLT------PAAETALESADL-VLVVVPADVRAVAAAARVCP 249 (322)
T ss_pred CHHHHHHHHHHHHhcC-------------CEEEEeCCCCCC------HHHHHHHHHCCE-EEEEcCCcHHHHHHHHHHHH
Confidence 3445555666665555 999999965431 224444555554 77888887777777777777
Q ss_pred HHHhCCCcEEEEEEcCCC--CCCHHHHHHhhcCCCCeee-cCCCCCC
Q 002941 273 SLKLRGYDVVAVVFEDHG--LVNEVPLMSYLRNRVPVLV-LPPLPQD 316 (863)
Q Consensus 273 ~~~~~~~~v~gvi~n~~~--~~~~~~~~~~~~~~~pvl~-~p~~~~~ 316 (863)
.++..+.++ .+|+|... ....+.+++.+ +.|+++ ||+.+.+
T Consensus 250 ~l~~~~~~~-~lVv~~~~~~~~~~~~i~~~l--g~~v~~~Ip~d~~v 293 (322)
T TIGR03815 250 ELGRRNPDL-RLVVRGPAPAGLDPEEIAESL--GLPLLGEVRDQRGL 293 (322)
T ss_pred HHhhhCCCe-EEEEeCCCCCCCCHHHHHHHh--CCCceeeCCCChhH
Confidence 777665554 56778652 23566677764 789998 8886543
No 399
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.33 E-value=0.0086 Score=62.62 Aligned_cols=93 Identities=22% Similarity=0.141 Sum_probs=61.5
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCCCHHHHHHh
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSY 300 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~~~~~~~~~ 300 (863)
+|+|||.+=-|+--- --.+++..++ +|.|++...-++-.+--..+...+-|+.=+++|+|++... ...+++.
T Consensus 134 ~e~VivDtEAGiEHf------gRg~~~~vD~-vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~-e~~~~~~ 205 (255)
T COG3640 134 YEVVIVDTEAGIEHF------GRGTIEGVDL-VIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE-EELLREL 205 (255)
T ss_pred CcEEEEecccchhhh------ccccccCCCE-EEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch-hHHHHhh
Confidence 599999985443211 1112222222 6788888776776666666666677888899999999766 3334443
Q ss_pred hc-CCCCeee-cCCCCCCCchhh
Q 002941 301 LR-NRVPVLV-LPPLPQDSSNDL 321 (863)
Q Consensus 301 ~~-~~~pvl~-~p~~~~~~~~~~ 321 (863)
.. .+.+|+| ||+.+.+..-++
T Consensus 206 ~~~~~~~vlg~iP~d~~v~~~dl 228 (255)
T COG3640 206 AEELGLEVLGVIPYDPEVVEADL 228 (255)
T ss_pred hhccCCeEEEEccCCHHHHhccc
Confidence 32 4899999 999998876544
No 400
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=97.32 E-value=0.0022 Score=66.90 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=29.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.|-|+| -.|||||++|..|+.+|. ++|++|...-
T Consensus 2 ~iav~g-KGGvGKTt~~~nLA~~la-----~~G~rvLliD 35 (212)
T cd02117 2 QIAIYG-KGGIGKSTTSQNLSAALA-----EMGKKVLQVG 35 (212)
T ss_pred EEEEEC-CCcCcHHHHHHHHHHHHH-----HCCCcEEEEe
Confidence 367888 899999999999999999 8999987654
No 401
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=97.30 E-value=0.035 Score=64.78 Aligned_cols=317 Identities=14% Similarity=0.079 Sum_probs=184.0
Q ss_pred hHHHHHHHHHHhhcCCCCCCeE-EEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcc
Q 002941 443 EPALECAELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (863)
Q Consensus 443 ~~~~eLae~L~~~~p~~~~~~v-~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~ 521 (863)
+...+|.+.|++++| ++.+ |--|||+..--+.|+.. |.|...+|+ |. +.|....-|-||..-
T Consensus 582 ~lf~~Le~~Lc~iTG---~D~~s~QPNsGA~GEYaGL~~I-RaY~~~kge--~h-----------RnvClIPvSAHGTNP 644 (1001)
T KOG2040|consen 582 QLFTELEKDLCEITG---FDSFSLQPNSGAQGEYAGLRVI-RAYLESKGE--GH-----------RNVCLIPVSAHGTNP 644 (1001)
T ss_pred HHHHHHHHHhheeec---ccceeecCCCCcccchhhHHHH-HHHHHhccC--Cc-----------ceeEEEeecccCCCh
Confidence 445789999999998 5666 45678888777777766 889888886 32 568888899999876
Q ss_pred ccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHH
Q 002941 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (863)
Q Consensus 522 gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 601 (863)
.+..+.|-. .+|+- +. .+..-| .
T Consensus 645 ASA~Magmk------------------------------vvpV~-~~------------------~~G~id--------~ 667 (1001)
T KOG2040|consen 645 ASAAMAGMK------------------------------VVPVG-CD------------------ANGNID--------M 667 (1001)
T ss_pred hhHHhcCCE------------------------------EEEee-cc------------------CCCCcc--------H
Confidence 655543311 11110 00 000011 1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecc----cccccccCCcch-h
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV----FTGFWRLGVETT-A 675 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvE-PViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV----~TGfGRtG~~~a-~ 675 (863)
.+|...-+ ++.++.||+++- | +.-|+.-+. ++.+.++-.+||--+.+|-+ |-|+-|-|-.++ .
T Consensus 668 ~dLk~kae-----kh~~~Laa~MvTYP---ST~GvfE~~---i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd~GaDV 736 (1001)
T KOG2040|consen 668 VDLKAKAE-----KHKDNLAALMVTYP---STHGVFEEG---IDDICDIIHEHGGQVYLDGANMNAQVGLCRPGDIGADV 736 (1001)
T ss_pred HHHHHHHH-----HhhhhhheeEEecc---ccccccccc---HHHHHHHHHhcCCEEEecCCCccceecccCCccccccc
Confidence 23333333 256778887775 5 345655443 67788888999999999976 667766665433 2
Q ss_pred hhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccce-----eecccCC----CccHHHHHHHHHHHHHhcCh
Q 002941 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKA-----LLHGHSY----SAHALGCAAAAKSIKWFKDP 746 (863)
Q Consensus 676 e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~-----~~~~~T~----~~~pla~AAalAaL~~l~~~ 746 (863)
.|+++.- ||.=.=|||---+|=+.+.+.++.++....-... ..-..|- .|+.+-.....|-++.|-..
T Consensus 737 ~HLNLHK---TFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~ 813 (1001)
T KOG2040|consen 737 CHLNLHK---TFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSG 813 (1001)
T ss_pred eeecccc---eeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhccc
Confidence 2333221 3332233331334445567777776654321100 0001122 24445555667778887655
Q ss_pred hhHHh---HHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCC---chHHHHHHHHHHHHCCcEEE
Q 002941 747 QTNHN---IIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY---GSLYAASLLKKLREDGVYMR 820 (863)
Q Consensus 747 ~l~~~---l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~---~~~~~~~l~~~l~e~GV~~~ 820 (863)
++.+. ..-++.++..+ ++.|-.+.. ++.-..++-||.-+- ++| ..-.+..++++|.+-|+...
T Consensus 814 GL~~as~~AiLNaNYMakR--------Le~hYkil~-~~~~~~vaHEFIlD~--r~fK~~agieavDvAKRL~DYgFHaP 882 (1001)
T KOG2040|consen 814 GLKDASKIAILNANYMAKR--------LESHYKILF-RGENGLVAHEFILDL--RPFKKTAGIEAVDVAKRLMDYGFHAP 882 (1001)
T ss_pred ccchhhHHHhhhhHHHHHH--------HhhccceeE-ecCCcceeeeeeeec--hhhccccCCcHHHHHHHHHhccCCCC
Confidence 54332 12233344332 233322222 222226666654331 111 11236789999999998664
Q ss_pred ----ecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 002941 821 ----PLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEE 858 (863)
Q Consensus 821 ----p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~~~~ 858 (863)
|..+.+.+-|.-.-+.+|+|++++++-..-+++.++++
T Consensus 883 TmswPV~gtLMIEPTESE~k~ElDRfcdAliSIreEI~~ie~ 924 (1001)
T KOG2040|consen 883 TMSWPVAGTLMIEPTESEDKAELDRFCDALISIREEIAQIEE 924 (1001)
T ss_pred ccccccCCceEeccCccccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55689999987777889999999999877777777655
No 402
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=97.28 E-value=0.006 Score=68.83 Aligned_cols=193 Identities=15% Similarity=0.035 Sum_probs=116.8
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
..+|....|.+.++++-+ ...++.++||-.|.-.|+...+ +.| .+||.+...|+|.
T Consensus 74 ~~nPt~~~le~~iaal~g---a~~~l~fsSGmaA~~~al~~L~---------~~g------------~~iV~~~~~Y~gT 129 (409)
T KOG0053|consen 74 SGNPTRDVLESGIAALEG---AAHALLFSSGMAAITVALLHLL---------PAG------------DHIVATGDVYGGT 129 (409)
T ss_pred CCCCchHHHHHHHHHHhC---CceEEEecccHHHHHHHHHHhc---------CCC------------CcEEEeCCCcccH
Confidence 346777788899999876 4679999999999999988662 123 5799999999886
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
....-... ..++...+ .-|.++
T Consensus 130 ~~~l~~~~--------------~~~gie~~----------------------------------------~vd~~~---- 151 (409)
T KOG0053|consen 130 LRILRKFL--------------PKFGGEGD----------------------------------------FVDVDD---- 151 (409)
T ss_pred HHHHHHHH--------------HHhCceee----------------------------------------eechhh----
Confidence 32211110 00000000 001001
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.++ .++-+|++|.. .+.-.-++ + +++|+++|+++|+++|+|+...+. .-++-+.
T Consensus 152 -~~~~~~~i~--------~~t~~V~~ESP-sNPll~v~-D---I~~l~~la~~~g~~vvVDnTf~~p------~~~~pL~ 211 (409)
T KOG0053|consen 152 -LKKILKAIK--------ENTKAVFLESP-SNPLLKVP-D---IEKLARLAHKYGFLVVVDNTFGSP------YNQDPLP 211 (409)
T ss_pred -HHHHHHhhc--------cCceEEEEECC-CCCccccc-c---HHHHHHHHhhCCCEEEEeCCcCcc------cccChhh
Confidence 233444442 36889999986 55544333 3 899999999999999999987543 2334444
Q ss_pred CCCcEEEe--ccccCCCCCC-ceeeecc-HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHH
Q 002941 680 CVPDIACY--GKLLTGGVIP-LAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSI 740 (863)
Q Consensus 680 v~PDivt~--sKgLggG~~P-igav~~~-~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL 740 (863)
.-.|||+- .|-++|.-=- .|.++.+ +++...+... ...--+..+|..|--..-.|
T Consensus 212 lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~------~~~lg~~~~p~~~~ll~Rgl 270 (409)
T KOG0053|consen 212 LGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFL------QEDLGWCEDPFDLFLLSRGL 270 (409)
T ss_pred cCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHH------HHHhcCCCCHHHHHHHhcCc
Confidence 45899975 5988763222 2345554 7777766531 11122345666665544333
No 403
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=97.18 E-value=0.064 Score=60.73 Aligned_cols=189 Identities=12% Similarity=0.091 Sum_probs=112.8
Q ss_pred CCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHH
Q 002941 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFD 709 (863)
Q Consensus 632 ~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~ 709 (863)
..|+..+ ++.+.+++++|+|=+= .+ .+..+-.+.| |++..| |+|| . --++.++.+++.++
T Consensus 155 stGv~~~---------~~~~~~~~llvvD~sS-~~--~s~pid~~~~----dvi~agsQKnlg-P-~Gltvvivs~~al~ 216 (364)
T PRK12462 155 VEGLQFP---------DAAGLPDSPLIADMSS-DF--MSRPFDVEAY----GMVYAHAQKNLG-P-AGVTVAIIRRALLE 216 (364)
T ss_pred CceEecC---------cccccCCCeEEEEcCc-hh--hCCCCChHHc----cEEEeeccccCC-C-CceEEEEECHHHHh
Confidence 3566664 3344579999999664 34 2334445555 888765 9997 2 33667888999887
Q ss_pred hhhcCCccce------eecccCCCc-cHHHHHHHHHHHHHhcCh-hhHHhHHHHHHHHHHHHHHHHHHHHhcCC----Ce
Q 002941 710 SFVGDSKLKA------LLHGHSYSA-HALGCAAAAKSIKWFKDP-QTNHNIIPERRILRELWDLELIQQISSHR----TV 777 (863)
Q Consensus 710 ~l~~~~~~~~------~~~~~T~~~-~pla~AAalAaL~~l~~~-~l~~~l~~~~~~l~~~l~~~l~~~~~~~p----~v 777 (863)
......+ .. ....++|.. +...+-+...+|+++.++ +=++.+.++.++..+.+.+ .+++.+ .+
T Consensus 217 ~~~~~~p-~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~----~id~~~~~~~~~ 291 (364)
T PRK12462 217 RVPDTLP-PMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYA----TLDALNEVIDCH 291 (364)
T ss_pred hccccCC-chhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH----HHHhCCCcccCC
Confidence 6543111 00 012345543 445667788899999665 2245566666666654433 333333 22
Q ss_pred eEecccceEEE-EEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 778 QRVVALGTLCA-IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 778 ~~vrg~Gl~~~-iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.+..-+..|.. +.+.++ ....+|.+.+.++|++--.+. +.+|.+.=-.++.|+++++++.+++.-+
T Consensus 292 ~~~~~RS~mnv~f~~~~~--------~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~L~~fm~~f~~ 361 (364)
T PRK12462 292 AHRAARSTMNVAFRFRQP--------RLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLCAFLKDFAI 361 (364)
T ss_pred CChhhcCcceEEEEcCCH--------HHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 22222222222 333322 367889999999999874321 4588776567899999999988877543
No 404
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=97.13 E-value=0.0038 Score=77.66 Aligned_cols=76 Identities=8% Similarity=-0.102 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHH
Q 002941 196 KVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK 275 (863)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~ 275 (863)
.+.+.+.++..+| |+|||.+...+.+ ....-|+...+. ||+|+..+.-....+..+++.++
T Consensus 644 ~~~~~l~~l~~~y-------------D~IiID~pp~~~~-----~d~~~l~~~~D~-vl~v~~~~~~~~~~~~~~~~~l~ 704 (754)
T TIGR01005 644 AMFSLVIHARLYS-------------DCVVVDVGTADPV-----RDMRAAARLAII-MLLVTAYDRVVVECGRADAQGIS 704 (754)
T ss_pred HHHHHHHHHHhhC-------------CEEEEcCCCcchh-----HHHHHhhhhCCe-EEEEEEeCceeHHHHHHHHHHHH
Confidence 3445555655666 9999999443222 223334444443 56888877778888889999999
Q ss_pred hCCCcEEEEEEcCCC
Q 002941 276 LRGYDVVAVVFEDHG 290 (863)
Q Consensus 276 ~~~~~v~gvi~n~~~ 290 (863)
..+.++.|||+|++.
T Consensus 705 ~~~~~~~GvvlN~~~ 719 (754)
T TIGR01005 705 RLNGEVTGVFLNMLD 719 (754)
T ss_pred hcCCceEEEEecCCC
Confidence 888999999999874
No 405
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.09 E-value=0.022 Score=61.63 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=31.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.|=|||+ .|+|||+++-.|.+.|. .+|.+|+.+-
T Consensus 52 ~viGITG~-PGaGKSTli~~L~~~l~-----~~G~rVaVlA 86 (323)
T COG1703 52 HVIGITGV-PGAGKSTLIEALGRELR-----ERGHRVAVLA 86 (323)
T ss_pred cEEEecCC-CCCchHHHHHHHHHHHH-----HCCcEEEEEE
Confidence 34789999 89999999999999999 9999998764
No 406
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.08 E-value=0.027 Score=65.20 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=31.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
...++++|. +|+|||++++.|+..|. ++|++|...-
T Consensus 95 p~vI~lvG~-~GsGKTTtaakLA~~L~-----~~g~kV~lV~ 130 (437)
T PRK00771 95 PQTIMLVGL-QGSGKTTTAAKLARYFK-----KKGLKVGLVA 130 (437)
T ss_pred CeEEEEECC-CCCcHHHHHHHHHHHHH-----HcCCeEEEec
Confidence 346888897 99999999999999998 8898888764
No 407
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=97.08 E-value=0.0061 Score=64.96 Aligned_cols=90 Identities=18% Similarity=0.147 Sum_probs=63.2
Q ss_pred CCceEEEeCCCcccccCCCC--CcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCC-------
Q 002941 220 MEILCIVETAGGVASPGPSG--SLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG------- 290 (863)
Q Consensus 220 ~~d~~lvEGagg~~~p~~~~--~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~------- 290 (863)
+-|++||.+ -|.+++ .+.++.++.- --.|+|.....-++..+.-.+.++++-+++|+|+|-|-..
T Consensus 156 ~lDyLviDt-----PPGtsDehls~~~~~~~~-~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~ 229 (300)
T KOG3022|consen 156 ELDYLVIDT-----PPGTSDEHLSLVQFLRES-DGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVENMSGFVCPKCG 229 (300)
T ss_pred CcCEEEEeC-----CCCCChhhhheeeccccc-CceEEEeCchhhhhHHHHhhhhhhhhcCCceEEEEeccccccCCCCC
Confidence 459999998 444322 2333444332 1268899999888999999999999999999999999431
Q ss_pred -------CCCHHHHHHhhcCCCCeee-cCCCCCCC
Q 002941 291 -------LVNEVPLMSYLRNRVPVLV-LPPLPQDS 317 (863)
Q Consensus 291 -------~~~~~~~~~~~~~~~pvl~-~p~~~~~~ 317 (863)
...-+.+.+. .++|.|| ||-.+.+.
T Consensus 230 ~~~~iF~~gGg~~l~~~--~glp~Lg~iPld~~i~ 262 (300)
T KOG3022|consen 230 HSTNIFGSGGGERLAEE--LGLPLLGSLPLDPLIA 262 (300)
T ss_pred CcceeccCccHHHHHHH--cCCCeEeecCCCHHHH
Confidence 1123444454 5899999 99877654
No 408
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=97.07 E-value=0.053 Score=61.78 Aligned_cols=70 Identities=19% Similarity=0.112 Sum_probs=44.9
Q ss_pred CCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-CCcEEEe--ccccCCCCCCceeeeccHH
Q 002941 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGGVIPLAATLATNA 706 (863)
Q Consensus 632 ~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivt~--sKgLggG~~Pigav~~~~~ 706 (863)
..|.+=+ +++|.++|++|++.|-+|-++.|....-+.+-.-..|+ ..|-+++ -|.++.- ++.|+++.+.+
T Consensus 206 ~~Ga~D~----l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P-~~~~~~l~r~~ 278 (373)
T PF00282_consen 206 NTGAIDP----LEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVP-YGCGVLLVRDK 278 (373)
T ss_dssp TTSBB-S----HHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-S-SS-EEEEESSG
T ss_pred ccccccC----HHHHhhhccccceeeeecccccccccccccccccccccccccccccchhhhhcCC-ccceeEEeecc
Confidence 3455543 89999999999999999999877322222111222344 4688877 4888776 68888888754
No 409
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=97.05 E-value=0.0052 Score=64.53 Aligned_cols=64 Identities=23% Similarity=0.069 Sum_probs=47.6
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhc-C---CCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCC
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPF-R---LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG 290 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l-~---~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~ 290 (863)
+|++||.+. |. ......-+...+ + --+|+|+....-++..+...++.++..|+++.|+|+|++.
T Consensus 114 yD~IIiD~p-----p~-~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~ 181 (217)
T cd02035 114 YDVIVFDTA-----PT-GHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVL 181 (217)
T ss_pred CCEEEECCC-----Cc-hHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCc
Confidence 599999993 32 111111122333 2 2489999999999999999999999999999999999873
No 410
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=97.01 E-value=0.23 Score=58.19 Aligned_cols=103 Identities=13% Similarity=-0.007 Sum_probs=57.7
Q ss_pred HHHHHHHHHHcCCeEEEecccccccc-cCCcchhh-hcCC-CCcEEEec--cccCCCCCCceeeeccHH--HHHhhhcCC
Q 002941 643 QRILVKECQNRKIPVIFDEVFTGFWR-LGVETTAD-LLGC-VPDIACYG--KLLTGGVIPLAATLATNA--VFDSFVGDS 715 (863)
Q Consensus 643 L~~Lrelc~~~gilLI~DEV~TGfGR-tG~~~a~e-~~gv-~PDivt~s--KgLggG~~Pigav~~~~~--i~~~l~~~~ 715 (863)
+++|.++|++||+.+.+|-+..||-. +-. -... -+++ ..|-|+++ |-+.. .++.|+++.+++ +.+.+....
T Consensus 226 i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~-~~~~~~f~l~~vdSIt~d~HK~g~a-P~~~G~il~rd~e~l~~~~~~~~ 303 (460)
T COG0076 226 IEELADIAEEYGIWLHVDAAFGGFLLPFLE-PDGRWDFGLEGVDSITVDGHKYGLA-PIGCGVVLFRDEEALRRILIFAD 303 (460)
T ss_pred HHHHHHHHHHcCCcEEEEccccceeecccC-ccchhhcCCCCceEEEECcccccCC-CCCceEEEEECHHHhhhhhhccc
Confidence 99999999999999999999987732 100 0011 1344 46778775 54332 356677888755 444433111
Q ss_pred cc------ceeecccCCCccHHHHHHHHHHHHHhcChhhH
Q 002941 716 KL------KALLHGHSYSAHALGCAAAAKSIKWFKDPQTN 749 (863)
Q Consensus 716 ~~------~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~ 749 (863)
.. ..+...+|- .....++..++|..+-.+++.
T Consensus 304 ~yl~~~~~~~~ti~~sr--~~~~~~~~~~~l~~lG~eGy~ 341 (460)
T COG0076 304 YYLPGGGIPNFTILGSR--PGRQALALYANLRRLGREGYR 341 (460)
T ss_pred ccCCCCCcCceeEeecc--chHHHHHHHHHHHHhCHhHHH
Confidence 10 001111111 122566677788877545543
No 411
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=97.01 E-value=0.0032 Score=68.07 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=52.8
Q ss_pred CCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHH----hCCCcEEEEEEcCCCCCCHH
Q 002941 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK----LRGYDVVAVVFEDHGLVNEV 295 (863)
Q Consensus 220 ~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~----~~~~~v~gvi~n~~~~~~~~ 295 (863)
++|++||.+.|++..+.. ...+...+ -||+|+....-.+..+...++.++ ..++++.|+|+|++.. ..
T Consensus 115 ~yD~vIIDt~g~~~~~~~-----~~al~~aD-~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~--~~ 186 (267)
T cd02032 115 EYDVILFDVLGDVVCGGF-----AAPLNYAD-YALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK--TD 186 (267)
T ss_pred cCCEEEEeCCCCcccccc-----hhhhhhcC-EEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH--HH
Confidence 469999999766544421 11122223 355566666555555444444433 3577889999998743 22
Q ss_pred HHHHhhc-CCCCeee-cCCCCCCC
Q 002941 296 PLMSYLR-NRVPVLV-LPPLPQDS 317 (863)
Q Consensus 296 ~~~~~~~-~~~pvl~-~p~~~~~~ 317 (863)
.+++.++ .+.|+++ ||......
T Consensus 187 ~i~~~~~~~~~~vl~~Ip~~~~v~ 210 (267)
T cd02032 187 LIDKFVEAVGMPVLAVLPLIEDIR 210 (267)
T ss_pred HHHHHHHhCCCCEEEEecCCcccc
Confidence 3333332 3788998 88866654
No 412
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=97.01 E-value=0.011 Score=63.74 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=32.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|+.|-|.| -.||||||+|..|+.+|. ++|+||...-
T Consensus 1 m~~iav~~-KGGvGKTT~~~nLA~~La-----~~G~kVlliD 36 (270)
T cd02040 1 MRQIAIYG-KGGIGKSTTTQNLSAALA-----EMGKKVMIVG 36 (270)
T ss_pred CcEEEEEe-CCcCCHHHHHHHHHHHHH-----hCCCeEEEEE
Confidence 56788886 899999999999999999 8999998775
No 413
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=96.94 E-value=0.012 Score=63.85 Aligned_cols=90 Identities=11% Similarity=0.065 Sum_probs=52.8
Q ss_pred CCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHH----hCCCcEEEEEEcCCCCCCHH
Q 002941 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK----LRGYDVVAVVFEDHGLVNEV 295 (863)
Q Consensus 220 ~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~----~~~~~v~gvi~n~~~~~~~~ 295 (863)
++|++||.+.|++...... ..+...+ -||+|+....-++..+...++.++ ..++++.|+|+|+... ..
T Consensus 117 ~yD~viIDt~g~~~~~~~~-----~~l~~AD-~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~--~~ 188 (270)
T PRK13185 117 DYDVILFDVLGDVVCGGFA-----APLQYAD-YALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG--TD 188 (270)
T ss_pred cCCEEEEecCCCcccCccc-----chhhhCc-EEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh--HH
Confidence 4699999996544322100 0011111 267777777666666655555543 3467789999998642 23
Q ss_pred HHHHhhc-CCCCeee-cCCCCCCC
Q 002941 296 PLMSYLR-NRVPVLV-LPPLPQDS 317 (863)
Q Consensus 296 ~~~~~~~-~~~pvl~-~p~~~~~~ 317 (863)
.+++.++ -+.++++ ||......
T Consensus 189 ~~~~~~~~~g~~vl~~Ip~~~~i~ 212 (270)
T PRK13185 189 LIDKFNEAVGLKVLAHVPDLDAIR 212 (270)
T ss_pred HHHHHHHHcCCCEEEECCCCcccC
Confidence 3334332 3788998 88765543
No 414
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=96.89 E-value=0.015 Score=62.93 Aligned_cols=102 Identities=16% Similarity=0.195 Sum_probs=70.5
Q ss_pred CChhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHH
Q 002941 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (863)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~ 271 (863)
.+.+.....++++...+ |++|+..-.|+.-+. ..-+... --+|+|.....-++..++.++
T Consensus 97 ~~~~~~~~~~~~l~~~~-------------D~iliD~~aGl~~~~-----~~~~~~s--d~~viVt~pe~~si~~A~~~i 156 (262)
T COG0455 97 LDPEDLEDVIKELEELY-------------DYILIDTGAGLSRDT-----LSFILSS--DELVIVTTPEPTSITDAYKTI 156 (262)
T ss_pred cCHHHHHHHHHHHHhcC-------------CEEEEeCCCCccHHH-----HHHHHhc--CcEEEEeCCCcchHHHHHHHH
Confidence 45566666666666655 999999966655442 2222222 457788888999999999999
Q ss_pred HHHHhCCCcEEE--EEEcCCC--CCC---HHHHHHhhcCCCCeee-cCCCC
Q 002941 272 ESLKLRGYDVVA--VVFEDHG--LVN---EVPLMSYLRNRVPVLV-LPPLP 314 (863)
Q Consensus 272 ~~~~~~~~~v~g--vi~n~~~--~~~---~~~~~~~~~~~~pvl~-~p~~~ 314 (863)
+.+...++...+ +|+|++. .+. ...+.+.. ..+|.+. +|+++
T Consensus 157 ~~~~~~~~~~~~~~vV~N~v~~~~e~~~~~~~~~~~~-~~~~~~~~i~~~~ 206 (262)
T COG0455 157 KILSKLGLDLLGRRVVLNRVRSTKEGVDVAALLIQVV-KQVPVLQVIPFDP 206 (262)
T ss_pred HHHHHcCCccccceEEEEecccccchhHHHHHHHHHH-HhCCceeEeccCh
Confidence 999999999999 9999983 222 22233332 2455666 89888
No 415
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=96.89 E-value=0.012 Score=63.99 Aligned_cols=36 Identities=14% Similarity=0.354 Sum_probs=31.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|+.|-|+ --.|||||+++..|+.+|. ++|+||..+-
T Consensus 1 ~~~iav~-gKGGVGKTT~a~nLA~~La-----~~G~rVllvD 36 (273)
T PRK13232 1 MRQIAIY-GKGGIGKSTTTQNLTAALS-----TMGNKILLVG 36 (273)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHH-----hhCCCeEEEe
Confidence 4566677 4899999999999999999 8999998775
No 416
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.86 E-value=0.017 Score=56.21 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=54.8
Q ss_pred ceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhC-CCcEEEEEEcCCCCCC-HHHHHH
Q 002941 222 ILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLR-GYDVVAVVFEDHGLVN-EVPLMS 299 (863)
Q Consensus 222 d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~-~~~v~gvi~n~~~~~~-~~~~~~ 299 (863)
|++||.+.+++ +.....+++..+. +|+|+....-++..+...++.+... +..-.++|+|++.... ...+.+
T Consensus 46 d~VIiD~p~~~------~~~~~~~l~~aD~-vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~~~~~~~~~ 118 (139)
T cd02038 46 DYIIIDTGAGI------SDNVLDFFLAADE-VIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKEGKKVFK 118 (139)
T ss_pred CEEEEECCCCC------CHHHHHHHHhCCe-EEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCHHHHHHHHH
Confidence 99999996543 2234566666664 7788888888888877777777543 3456789999984332 222222
Q ss_pred --------hhcCCCCeee-cC
Q 002941 300 --------YLRNRVPVLV-LP 311 (863)
Q Consensus 300 --------~~~~~~pvl~-~p 311 (863)
+...++|.+| ||
T Consensus 119 ~~~~~~~r~~~~~l~~~~~~~ 139 (139)
T cd02038 119 RLSNVSNRFLGLSLDYLGFIP 139 (139)
T ss_pred HHHHHHHHHhCCChhhceecC
Confidence 3334688888 76
No 417
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=96.86 E-value=0.0096 Score=61.48 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=32.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.|.||+--.||||||.|+.|..+|. +.|+||...-
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA-----~~GkKv~liD 38 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALA-----QLGKKVVLID 38 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHH-----HcCCeEEEEe
Confidence 45889999999999999999999999 8999998765
No 418
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.82 E-value=0.03 Score=60.95 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=31.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
++.+.++| -+|+|||++++-|+..|. ++|++|...-
T Consensus 72 ~~vi~l~G-~~G~GKTTt~akLA~~l~-----~~g~~V~li~ 107 (272)
T TIGR00064 72 PNVILFVG-VNGVGKTTTIAKLANKLK-----KQGKSVLLAA 107 (272)
T ss_pred CeEEEEEC-CCCCcHHHHHHHHHHHHH-----hcCCEEEEEe
Confidence 45788888 599999999999999998 8898987765
No 419
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=96.80 E-value=0.16 Score=56.99 Aligned_cols=223 Identities=13% Similarity=0.136 Sum_probs=123.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHH-HHHcCCeEEEeccccccccc-CC--------
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRL-GV-------- 671 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrel-c~~~gilLI~DEV~TGfGRt-G~-------- 671 (863)
+.+|+.+.+ ...|-++++=|.-.+..| ++.+.+-.++|..+ +...+.-++-|.+++ +--. +.
T Consensus 161 D~Ve~LV~~------D~svKGiWcVP~ySNPtG-~tySde~vrrlA~m~~AA~DFRI~WDNAY~-vHhL~~~~~~~~~~n 232 (425)
T PF12897_consen 161 DMVEELVAE------DPSVKGIWCVPKYSNPTG-ITYSDEVVRRLAAMKTAAPDFRIFWDNAYA-VHHLYDEEPRDALLN 232 (425)
T ss_dssp HHHHHHTHT------STTEEEEEE-SSS-TTT------HHHHHHHHHS--SSTT-EEEEE-TTT-T-BSSSSSS------
T ss_pred HHHHHHHhc------CCccceEEeCCCccCCCC-ccCCHHHHHHHhcCCcCCcCeEEEeecCce-EeeccccccchhhhH
Confidence 456665532 457999999998555566 56688888899888 447899999999984 3222 21
Q ss_pred -cchhhhcCCCCcEE----EeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcCh
Q 002941 672 -ETTADLLGCVPDIA----CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDP 746 (863)
Q Consensus 672 -~~a~e~~gv~PDiv----t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~ 746 (863)
.-.++..| .||.+ ..||---.| .-++++.++++-++.+... ....|-+.+-+....-..-++-.+ .
T Consensus 233 il~~~~~AG-npdrv~~F~STSKITf~G-aGva~~aaS~~Nl~~~~~~------~~~~tIgpdKvNQLRHvrff~d~~-g 303 (425)
T PF12897_consen 233 ILDACAKAG-NPDRVYVFASTSKITFPG-AGVAFFAASEANLAWIKKH------LSVQTIGPDKVNQLRHVRFFKDAE-G 303 (425)
T ss_dssp HHHHHHHTT--TTSEEEEEESTTTS-TT-SS-EEEEE-HHHHHHHHHH------HHHH-S---HHHHHHHHHHHHSHH-T
T ss_pred HHHHHHHcC-CCCeEEEEecccccccCC-cceeeeecCHHHHHHHHHH------hcCceeCccHHHHHHHHHHhcChh-h
Confidence 11222333 57754 347844333 3588999998888877642 233444444454443333333211 2
Q ss_pred hhHHhHHHHHHHHHHHHHHHH---HHHHh-cCCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe
Q 002941 747 QTNHNIIPERRILRELWDLEL---IQQIS-SHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP 821 (863)
Q Consensus 747 ~l~~~l~~~~~~l~~~l~~~l---~~~~~-~~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p 821 (863)
++.+++++..+.++-.|...+ .+.+. .......... -|.|+.++..+. .+.++.+.+.+.||.+.|
T Consensus 304 Gv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G---------~AkrvV~lakeAGV~LT~ 374 (425)
T PF12897_consen 304 GVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDG---------TAKRVVELAKEAGVALTP 374 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT----------HHHHHHHHHHTTEE---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCC---------hHHHHHHHHHHhCceeCC
Confidence 567777777777776665432 22333 3334444444 467888888764 488999999999999986
Q ss_pred cC-----------CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 822 LG-----------NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 822 ~g-----------~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.| ..||+.| ..-+.||++.+++.+.-++.
T Consensus 375 AGAtfPyg~DP~D~nIRiAP-S~P~leel~~Am~~~~~cv~ 414 (425)
T PF12897_consen 375 AGATFPYGKDPRDSNIRIAP-SYPSLEELETAMDVFATCVK 414 (425)
T ss_dssp TTTTSGGG--TTS-EEEE---SSS-HHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCcEEecC-CCCCHHHHHHHHHHHHHHHH
Confidence 43 6899884 45678899999999977664
No 420
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.79 E-value=0.032 Score=64.26 Aligned_cols=35 Identities=14% Similarity=0.053 Sum_probs=30.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
..++++|. +||||||+++-|+..|+ ++|++|...-
T Consensus 101 ~vi~lvG~-~GvGKTTtaaKLA~~l~-----~~G~kV~lV~ 135 (429)
T TIGR01425 101 NVIMFVGL-QGSGKTTTCTKLAYYYQ-----RKGFKPCLVC 135 (429)
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCCEEEEc
Confidence 35888886 99999999999999998 8898887664
No 421
>PRK10867 signal recognition particle protein; Provisional
Probab=96.78 E-value=0.068 Score=61.83 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=29.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCC-CCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-NKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~-g~~v~~~K 78 (863)
.++++| -+|+|||++++-|+..|. ++ |++|...-
T Consensus 102 vI~~vG-~~GsGKTTtaakLA~~l~-----~~~G~kV~lV~ 136 (433)
T PRK10867 102 VIMMVG-LQGAGKTTTAGKLAKYLK-----KKKKKKVLLVA 136 (433)
T ss_pred EEEEEC-CCCCcHHHHHHHHHHHHH-----HhcCCcEEEEE
Confidence 577777 599999999999999998 77 88887765
No 422
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=96.77 E-value=0.018 Score=63.33 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=29.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.|+| -.|||||+++.-|+.+|. ++|+||..+-
T Consensus 3 ia~~g-KGGVGKTTta~nLA~~La-----~~G~rVLlID 35 (290)
T CHL00072 3 LAVYG-KGGIGKSTTSCNISIALA-----RRGKKVLQIG 35 (290)
T ss_pred EEEEC-CCCCcHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 77888 899999999999999999 8999987664
No 423
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=96.74 E-value=0.55 Score=51.99 Aligned_cols=228 Identities=10% Similarity=0.031 Sum_probs=119.9
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhh---
Q 002941 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL--- 677 (863)
Q Consensus 601 ~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~--- 677 (863)
++.|++.+++ .+.+.|+-|++--. .+..|-.+.+-.-++++++||++|||.+++|-.... - -..|--+.
T Consensus 171 ~~kLe~lide----vG~~nvp~I~~tiT-~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~Rfa--E-NaYFIk~rE~g 242 (471)
T COG3033 171 LEKLERLIDE----VGADNVPYIVLTIT-NNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFA--E-NAYFIKQREPG 242 (471)
T ss_pred HHHHHHHHHH----hCcccCcEEEEEEe-ccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhh--h-hhhhhhhcCcc
Confidence 3567777765 46677765555443 444555777888899999999999999999965421 1 11222111
Q ss_pred ---cCC---------CCcEEEec-cccCCCCCCceeee-ccHH----HHHhhhcCCccceee-cccCCCc----cHHHHH
Q 002941 678 ---LGC---------VPDIACYG-KLLTGGVIPLAATL-ATNA----VFDSFVGDSKLKALL-HGHSYSA----HALGCA 734 (863)
Q Consensus 678 ---~gv---------~PDivt~s-KgLggG~~Pigav~-~~~~----i~~~l~~~~~~~~~~-~~~T~~~----~pla~A 734 (863)
+-+ ..|-.|+| |- .|..++|..+ .+++ +...+... ..+. ...||+| ...++|
T Consensus 243 Yrd~sI~~IarEm~sYaD~~~mS~KK--D~lvnmGGfl~~~D~~~fDvy~~~~~~---~V~~eG~~tYGgl~GrdmealA 317 (471)
T COG3033 243 YRDWSIEEIAREMYSYADGCTMSAKK--DGLVNMGGFLCFKDDSFFDVYEECRTL---VVVQEGFPTYGGLAGRDMEALA 317 (471)
T ss_pred cccccHHHHHHHHHhhhhhheeeccc--cceeccccEEEecCccHHHHHHHHHhh---eEeeccccccCcccchhHHHHH
Confidence 111 24666664 31 1224444444 4444 44433321 1111 2234443 444555
Q ss_pred HHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEE-EccCCcCCCCchHHHHHHHHHHH
Q 002941 735 AAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIE-LQAAGCNAGYGSLYAASLLKKLR 813 (863)
Q Consensus 735 AalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~ie-l~~~~~~~~~~~~~~~~l~~~l~ 813 (863)
+++ ..--+.+|+..-.+..++|.+.|.+. .-|++..+-|.+.++-.. +-+.-..+.|+ +..++-+|.
T Consensus 318 vGL---~e~~~~~yl~~Rv~Qv~YL~~~l~~~------GVpi~~paGGHavfvda~~~lphip~eqFp---aqala~ely 385 (471)
T COG3033 318 VGL---REGVNFDYLAHRVAQVQYLADGLEEA------GVPIVQPAGGHAVFVDAGKFLPHIPAEQFP---AQALACELY 385 (471)
T ss_pred HHH---HHhcCcHHHHHHHHHHHHHHHHHHhc------CCeeEecCCCceEEeehhhhcCCCChhhCc---HHHHHHHHH
Confidence 443 22224555555456667777755332 345555565655544321 11111111222 233333333
Q ss_pred -HCCcEE-------Eec-----------CCEEEEecCCC-CcHHHHHHHHHHHHHHHHHH
Q 002941 814 -EDGVYM-------RPL-----------GNVIYLMCGPC-SSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 814 -e~GV~~-------~p~-----------g~~lr~~ppl~-~t~eeid~~v~~L~~~l~~l 853 (863)
+.||-. ... -+.+|++.|-. -|.+++|.+++++....+.-
T Consensus 386 ~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~~ 445 (471)
T COG3033 386 KEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKENA 445 (471)
T ss_pred HHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhcc
Confidence 445433 211 16788877765 49999999999998877643
No 424
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.71 E-value=0.015 Score=51.34 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=28.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
++|+|.. |+|||+++..|++.|. +.|++|..++
T Consensus 2 ~~~~g~~-G~Gktt~~~~l~~~l~-----~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKG-GVGKTTLAANLAAALA-----KRGKRVLLID 34 (99)
T ss_pred EEEECCC-CCCHHHHHHHHHHHHH-----HCCCeEEEEC
Confidence 5788887 9999999999999998 7787776666
No 425
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.68 E-value=0.0042 Score=62.03 Aligned_cols=37 Identities=16% Similarity=0.123 Sum_probs=34.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (863)
|+.|.|+|. +++|||++.--|++.|+ .+|++|++.|=
T Consensus 2 ~~Il~ivG~-k~SGKTTLie~lv~~L~-----~~G~rVa~iKH 38 (161)
T COG1763 2 MKILGIVGY-KNSGKTTLIEKLVRKLK-----ARGYRVATVKH 38 (161)
T ss_pred CcEEEEEec-CCCChhhHHHHHHHHHH-----hCCcEEEEEEe
Confidence 677999999 89999999999999999 99999999994
No 426
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=96.68 E-value=0.43 Score=56.36 Aligned_cols=66 Identities=21% Similarity=0.143 Sum_probs=45.1
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccccccc-CCcchhhhcCCCCcEEEec--cccCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL-GVETTADLLGCVPDIACYG--KLLTG 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRt-G~~~a~e~~gv~PDivt~s--KgLgg 693 (863)
.++||..|. -.|+..- ++++.+.+.++++.+..||+| |+-+. ..++.-....-..|++|-| |-+++
T Consensus 168 k~~vitnpT---YdGv~~n----~~~i~~~~~~~~a~v~~deah-~~~~~~~~~l~~~~~~~~~~~~tqS~HK~l~a 236 (557)
T COG1982 168 KLAVITNPT---YDGVCYN----LRKIVELLHHYGAWVLYDEAH-PAHFDFSPMLPESALNGGADFVTQSTHKLLAA 236 (557)
T ss_pred eeEEEecCc---cceEeec----HHHHHHHHhhcCceEEhhhcC-cccccccccCcchhhhcCceEEEechhhhhhh
Confidence 789999996 3576666 889999999999999999998 55222 1122222222346788877 55554
No 427
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.67 E-value=0.08 Score=61.22 Aligned_cols=82 Identities=18% Similarity=0.185 Sum_probs=46.7
Q ss_pred CceEEEeCCCcccccCCCCCcHhHH---hhhc-CCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCCC---
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDL---YRPF-RLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVN--- 293 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dl---a~~l-~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~~--- 293 (863)
+|+|||.++|... . +.....++ .+.+ --.++||+++..| ..++.....+. ..+++.|+|+|+.+.+.
T Consensus 183 ~DvVIIDTaGr~~--~-d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~-~~v~i~giIlTKlD~~~~~G 256 (428)
T TIGR00959 183 FDVVIVDTAGRLQ--I-DEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFN-ERLGLTGVVLTKLDGDARGG 256 (428)
T ss_pred CCEEEEeCCCccc--c-CHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHH-hhCCCCEEEEeCccCccccc
Confidence 5999999999543 2 22222222 2222 2347999997644 33333333333 34678999999885321
Q ss_pred -HHHHHHhhcCCCCeeec
Q 002941 294 -EVPLMSYLRNRVPVLVL 310 (863)
Q Consensus 294 -~~~~~~~~~~~~pvl~~ 310 (863)
...+... +++|+.-+
T Consensus 257 ~~lsi~~~--~~~PI~fi 272 (428)
T TIGR00959 257 AALSVRSV--TGKPIKFI 272 (428)
T ss_pred HHHHHHHH--HCcCEEEE
Confidence 2223333 58998753
No 428
>PRK14974 cell division protein FtsY; Provisional
Probab=96.65 E-value=0.023 Score=63.60 Aligned_cols=36 Identities=17% Similarity=0.049 Sum_probs=30.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
...+.++|. +|+|||++++.|+..|+ ..|++|+..-
T Consensus 140 ~~vi~~~G~-~GvGKTTtiakLA~~l~-----~~g~~V~li~ 175 (336)
T PRK14974 140 PVVIVFVGV-NGTGKTTTIAKLAYYLK-----KNGFSVVIAA 175 (336)
T ss_pred CeEEEEEcC-CCCCHHHHHHHHHHHHH-----HcCCeEEEec
Confidence 346888885 99999999999999998 7888887743
No 429
>PHA02518 ParA-like protein; Provisional
Probab=96.64 E-value=0.048 Score=56.35 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=31.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.|-|++.-.|||||+++..|+.+|. ++|++|...-
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la-----~~g~~vlliD 36 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLH-----ADGHKVLLVD 36 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHH-----hCCCeEEEEe
Confidence 5789999999999999999999999 8899987765
No 430
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.59 E-value=0.007 Score=60.25 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=34.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCC
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGY 84 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~ 84 (863)
+.|+|. +|+|||+++..|++.|+ .+|++|+++|+...+.
T Consensus 2 i~i~G~-~gsGKTtl~~~l~~~l~-----~~G~~V~viK~~~~~~ 40 (155)
T TIGR00176 2 LQIVGP-KNSGKTTLIERLVKALK-----ARGYRVATIKHDHHDF 40 (155)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH-----hcCCeEEEEecccccc
Confidence 578888 69999999999999998 8899999999865543
No 431
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=96.58 E-value=0.051 Score=57.73 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=34.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|+.|-|.+.-.|||||+++..|+..|. ++|++|..+-
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la-----~~G~~VlliD 37 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALA-----SDGKRVALFE 37 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHH-----hCCCcEEEEe
Confidence 567999999999999999999999999 8999998776
No 432
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=96.56 E-value=0.021 Score=61.80 Aligned_cols=88 Identities=11% Similarity=0.108 Sum_probs=51.0
Q ss_pred CCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHH----hCCCcEEEEEEcCCCCCCHH
Q 002941 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK----LRGYDVVAVVFEDHGLVNEV 295 (863)
Q Consensus 220 ~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~----~~~~~v~gvi~n~~~~~~~~ 295 (863)
++|++||.+.|++..+.... .....+. +|+|+....-++..+...++.++ ..++++.|||+|++... .
T Consensus 115 ~yD~ViID~~~~~~~~~~~~-----~l~aAD~-vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~--~ 186 (268)
T TIGR01281 115 DYDVILFDVLGDVVCGGFAT-----PLQYADY-ALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT--D 186 (268)
T ss_pred cCCEEEEecCCccccCcccc-----chhhcCE-EEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH--H
Confidence 35999999976654432110 1112222 55566666656665555555443 24678899999988443 2
Q ss_pred HHHHhhc-CCCCeee-cCCCCC
Q 002941 296 PLMSYLR-NRVPVLV-LPPLPQ 315 (863)
Q Consensus 296 ~~~~~~~-~~~pvl~-~p~~~~ 315 (863)
.+.+..+ .+.|+++ ||....
T Consensus 187 ~~~~~~~~~~~~vl~~I~~~~~ 208 (268)
T TIGR01281 187 LIERFNERVGMPVLGVVPDLEV 208 (268)
T ss_pred HHHHHHHHcCCCEEEEcCCChH
Confidence 2222221 3788998 776544
No 433
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=96.52 E-value=0.026 Score=61.46 Aligned_cols=36 Identities=14% Similarity=0.347 Sum_probs=32.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|++|.|.| -.|||||++|..|+.+|. ++|+||..+-
T Consensus 1 ~~~i~~~g-KGGVGKTT~a~nLA~~La-----~~G~rVLliD 36 (279)
T PRK13230 1 MRKFCFYG-KGGIGKSTTVCNIAAALA-----ESGKKVLVVG 36 (279)
T ss_pred CcEEEEEC-CCCCcHHHHHHHHHHHHH-----hCCCEEEEEe
Confidence 67888998 899999999999999999 9999997764
No 434
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.51 E-value=0.058 Score=58.59 Aligned_cols=34 Identities=15% Similarity=0.382 Sum_probs=30.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.|.|.| -.||||||+|..|+.+|. ++|++|..+-
T Consensus 2 ~ia~~g-KGGVGKTT~a~nLA~~La-----~~G~~VlliD 35 (275)
T TIGR01287 2 QIAIYG-KGGIGKSTTTQNIAAALA-----EMGKKVMIVG 35 (275)
T ss_pred eeEEeC-CCcCcHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 477888 899999999999999999 8999998765
No 435
>PRK13236 nitrogenase reductase; Reviewed
Probab=96.47 E-value=0.029 Score=61.86 Aligned_cols=37 Identities=8% Similarity=0.232 Sum_probs=32.2
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.|+.|-+.| -.|||||+++.-|+.+|. ++|+||..+-
T Consensus 5 ~~~~~~~~G-KGGVGKTt~a~NLA~~La-----~~G~rVLliD 41 (296)
T PRK13236 5 NIRQIAFYG-KGGIGKSTTSQNTLAAMA-----EMGQRILIVG 41 (296)
T ss_pred CceEEEEEC-CCcCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 355677777 899999999999999999 8999998886
No 436
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=96.46 E-value=0.054 Score=57.51 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=34.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|+.|.|++.-.|+|||+++..|+.+|. ++|++|...-
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la-----~~g~~VlliD 37 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALK-----LLGEPVLAID 37 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHH-----hCCCcEEEEe
Confidence 678999999999999999999999998 8899998776
No 437
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.45 E-value=0.019 Score=57.48 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=36.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccC
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTG 83 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g 83 (863)
|+.+.|+|. +|+|||+++..|++.|. .+|++|+++|.-..+
T Consensus 1 m~vi~i~G~-~gsGKTTli~~L~~~l~-----~~g~~V~~iK~~~~~ 41 (159)
T cd03116 1 MKVIGFVGY-SGSGKTTLLEKLIPALS-----ARGLRVAVIKHDHHD 41 (159)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCcEEEEEecCCc
Confidence 578999999 69999999999999998 899999999965443
No 438
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.39 E-value=0.091 Score=52.80 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=28.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.++|. +|+|||+++..|+..+. +.|.+|.++-
T Consensus 3 ~~~~G~-~G~GKTt~~~~la~~~~-----~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGL-QGVGKTTTAAKLALYLK-----KKGKKVLLVA 35 (173)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 456666 99999999999999998 7888888776
No 439
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=96.25 E-value=0.044 Score=59.16 Aligned_cols=91 Identities=12% Similarity=0.085 Sum_probs=51.1
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHh-hhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCCC-HHHHH
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLY-RPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVN-EVPLM 298 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla-~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~~-~~~~~ 298 (863)
+|+|||.+.|++.... ....++ ...+ -+|+|+....-++..+-..++.++.-+.++.++|.|...... .+.+.
T Consensus 114 yD~ViIDt~~~~~~~~----~~~~~~~~aaD-~vlip~~p~~~si~~~~~~~~~i~~~~~~~~~vv~~~~~~~~~~~~~~ 188 (264)
T PRK13231 114 IDVVIYDVLGDVVCGG----FSVPLREDYAD-EVYIVTSGEYMSLYAANNIARGIKKLKGKLGGIICNCRGIDNEVEIVS 188 (264)
T ss_pred CCEEEEecCCCceEcc----ccccccccccc-eeEEEecCchhHHHHHHHHHHHHHHcCCcceEEEEcCCCCccHHHHHH
Confidence 4999999966442111 000000 1112 467777777777777777777766544567788888653222 22333
Q ss_pred Hhhc-CCCCeee-cCCCCCC
Q 002941 299 SYLR-NRVPVLV-LPPLPQD 316 (863)
Q Consensus 299 ~~~~-~~~pvl~-~p~~~~~ 316 (863)
+..+ -+.++++ ||.....
T Consensus 189 ~l~~~~~~~vl~~I~~~~~v 208 (264)
T PRK13231 189 EFASRIGSRIIGVIPRSNLV 208 (264)
T ss_pred HHHHHhCCCeEEeCCCCHHH
Confidence 3222 2677887 7775544
No 440
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=96.25 E-value=0.01 Score=64.89 Aligned_cols=38 Identities=8% Similarity=0.094 Sum_probs=33.3
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.+.+.+.||+..+||-+.+..|.++|+ ++|+++.+.=
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~-----~~G~~a~fva 148 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALR-----ERGINAGFVA 148 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHH-----HTT--EEEEE
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHH-----HcCCCceEEe
Confidence 4678999999999999999999999999 9999998875
No 441
>PRK10818 cell division inhibitor MinD; Provisional
Probab=96.24 E-value=0.058 Score=58.33 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=33.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
++.|-|++.-.|||||++++.|+.+|. ++|++|...-
T Consensus 2 ~kviav~s~KGGvGKTt~a~nlA~~la-----~~g~~vllvD 38 (270)
T PRK10818 2 ARIIVVTSGKGGVGKTTSSAAIATGLA-----QKGKKTVVID 38 (270)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 367999999999999999999999998 8899988765
No 442
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=96.19 E-value=0.079 Score=59.06 Aligned_cols=200 Identities=16% Similarity=0.147 Sum_probs=109.9
Q ss_pred EEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC--cchhhhc-CCCCcEE---EeccccC--C
Q 002941 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLL-GCVPDIA---CYGKLLT--G 693 (863)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--~~a~e~~-gv~PDiv---t~sKgLg--g 693 (863)
.++=.+ +++..|+.+ +.+-|++|.++-++.|.+-++|=++-|||.-.. .++...+ ...|-++ .|||.+| |
T Consensus 175 vLLH~C-cHNPTG~D~-t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLYg 252 (396)
T COG1448 175 VLLHGC-CHNPTGIDP-TEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFGLYG 252 (396)
T ss_pred EEEecC-CCCCCCCCC-CHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhhh
Confidence 344455 699999665 677889999999999999999999999964321 1222221 1233344 3689876 2
Q ss_pred CCCC---ceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhH-------HHHHHHHHHHH
Q 002941 694 GVIP---LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI-------IPERRILRELW 763 (863)
Q Consensus 694 G~~P---igav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l-------~~~~~~l~~~l 763 (863)
-. ++++.-+++.++.+...- ....-.+|+..|.-=|+..++ +|.++++.+.. +++...++..|
T Consensus 253 --ERVGa~~vva~~~~~a~~v~sql---k~~iR~~ySnPP~~Ga~vva~--IL~~p~Lra~W~~El~~Mr~Ri~~mR~~l 325 (396)
T COG1448 253 --ERVGALSVVAEDAEEADRVLSQL---KAIIRTNYSNPPAHGAAVVAT--ILNNPELRAEWEQELEEMRQRILEMRQAL 325 (396)
T ss_pred --hccceeEEEeCCHHHHHHHHHHH---HHHHHhccCCCchhhHHHHHH--HhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 344555666666554210 012335666555433333332 34565544333 33333444444
Q ss_pred HHHHHHHHhc--CCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecCCEEEEecCCCCcHHHHH
Q 002941 764 DLELIQQISS--HRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLGNVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 764 ~~~l~~~~~~--~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g~~lr~~ppl~~t~eeid 840 (863)
.+.|.+.... ...|.. -.|+|.-.-+ +.+-..+|+ +.||++...| ++-+ ..+++..|+
T Consensus 326 v~~L~~~~~~~~f~~i~~--Q~GMFsy~Gl-------------s~~QV~rLree~~IY~v~sG-Ri~v---aGl~~~ni~ 386 (396)
T COG1448 326 VDALKALGAPRNFDFIIS--QRGMFSYTGL-------------SPEQVDRLREEFGIYLVASG-RINV---AGLNTSNID 386 (396)
T ss_pred HHHHHhhCCCcccchHhh--cCceeecCCC-------------CHHHHHHHHHhccEEEecCC-eeee---ccCChhhHH
Confidence 3333332222 222322 3343332222 222344455 6799998776 3333 367899999
Q ss_pred HHHHHHHHH
Q 002941 841 QLLLKLYQR 849 (863)
Q Consensus 841 ~~v~~L~~~ 849 (863)
.+.+++.++
T Consensus 387 ~va~ai~~v 395 (396)
T COG1448 387 YVAKAIAAV 395 (396)
T ss_pred HHHHHHHhh
Confidence 999888765
No 443
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=96.17 E-value=0.34 Score=54.78 Aligned_cols=95 Identities=18% Similarity=0.293 Sum_probs=68.5
Q ss_pred HHHHHHHHHHcCCeEEEecccccccccCCcch-hhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCccce
Q 002941 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKA 719 (863)
Q Consensus 643 L~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a-~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~~~ 719 (863)
++++.++|++||+++|+|..- |. +.-.-.. -+.+..-+|+|+|| |-|+| -.-|.+++++++++.+....
T Consensus 176 ~~~l~~ia~~~~lpvivD~aS-g~-~v~~e~~l~~~la~GaDLV~~SgdKllgG--PqaGii~GkKelI~~lq~~~---- 247 (395)
T COG1921 176 EEELVEIAHEKGLPVIVDLAS-GA-LVDKEPDLREALALGADLVSFSGDKLLGG--PQAGIIVGKKELIEKLQSHP---- 247 (395)
T ss_pred HHHHHHHHHHcCCCEEEecCC-cc-ccccccchhHHHhcCCCEEEEecchhcCC--CccceEechHHHHHHHHhhh----
Confidence 788999999999999999765 33 2212222 23334568999996 77775 33556899999999887632
Q ss_pred eecccCCCccHHHHHHHHHHHHHhcChh
Q 002941 720 LLHGHSYSAHALGCAAAAKSIKWFKDPQ 747 (863)
Q Consensus 720 ~~~~~T~~~~pla~AAalAaL~~l~~~~ 747 (863)
.....-..+..+|+..++|+.+..++
T Consensus 248 --l~Ralrv~K~tla~l~~aLe~y~~~~ 273 (395)
T COG1921 248 --LKRALRVDKETLAALEAALELYLQPE 273 (395)
T ss_pred --hhhhhhcCcHhHHHHHHHHHHHcCch
Confidence 23344567889999999999887654
No 444
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.15 E-value=0.12 Score=57.71 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=30.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
...+.++| -+|+||||+++.|+..+. .+|.+|...-
T Consensus 114 ~~vi~lvG-pnGsGKTTt~~kLA~~l~-----~~g~~V~Li~ 149 (318)
T PRK10416 114 PFVILVVG-VNGVGKTTTIGKLAHKYK-----AQGKKVLLAA 149 (318)
T ss_pred CeEEEEEC-CCCCcHHHHHHHHHHHHH-----hcCCeEEEEe
Confidence 34688899 599999999999999998 7888887654
No 445
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.073 Score=58.12 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=34.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.+++.||+..+||-+.+.-|-++++ .+|+++++.-
T Consensus 148 a~~V~vvGTd~~vGKrTTa~~L~~~~~-----e~G~~a~fva 184 (339)
T COG3367 148 AKVVLVVGTDCAVGKRTTALELREAAR-----EEGIKAGFVA 184 (339)
T ss_pred CcEEEEeccccccchhHHHHHHHHHHH-----HhCCccceEe
Confidence 458999999999999999999999999 8999998876
No 446
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.12 E-value=0.095 Score=59.52 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=31.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
..+.|.|. +|+|||+..+.|+..|. .+|++|++.-
T Consensus 242 ~vI~LVGp-tGvGKTTTiaKLA~~L~-----~~GkkVglI~ 276 (436)
T PRK11889 242 QTIALIGP-TGVGKTTTLAKMAWQFH-----GKKKTVGFIT 276 (436)
T ss_pred cEEEEECC-CCCcHHHHHHHHHHHHH-----HcCCcEEEEe
Confidence 56899999 99999999999999998 8899998765
No 447
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=96.08 E-value=1.3 Score=55.90 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=37.7
Q ss_pred HHHHHHHHHHCCcEEEec-CCEEEEecCCCCcHHHHHHHHHHHH
Q 002941 805 AASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLY 847 (863)
Q Consensus 805 ~~~l~~~l~e~GV~~~p~-g~~lr~~ppl~~t~eeid~~v~~L~ 847 (863)
+.++.+.+.++||.++.. ++.++++..-.+|++||+.+++.+.
T Consensus 383 ~~~i~~~~~~~gi~l~~~~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 383 SSELLKAAEEFNINLRAVDTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred HHHHHHHHHHCCCeeeecCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 567899999999998865 4788998888999999999999995
No 448
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.04 E-value=0.28 Score=54.18 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=32.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
++.+.|+|. +|+|||+++..|...+. ++|++|..+.
T Consensus 34 ~~~i~i~G~-~G~GKttl~~~l~~~~~-----~~~~~v~~i~ 69 (300)
T TIGR00750 34 AHRVGITGT-PGAGKSTLLEALGMELR-----RRGLKVAVIA 69 (300)
T ss_pred ceEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 556888887 99999999999999998 8899998776
No 449
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=96.03 E-value=0.013 Score=65.49 Aligned_cols=95 Identities=18% Similarity=0.246 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCeEEEeccccc------ccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcC
Q 002941 643 QRILVKECQNRKIPVIFDEVFTG------FWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGD 714 (863)
Q Consensus 643 L~~Lrelc~~~gilLI~DEV~TG------fGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~ 714 (863)
++++.+++++||+++|.|-.-.. +|-.+..-..+....-+|+|||| |-|||- --|.+++++++++.++.+
T Consensus 159 ~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGP--QaGiI~Gkk~lI~~lk~~ 236 (367)
T PF03841_consen 159 LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGP--QAGIIVGKKELIEKLKKH 236 (367)
T ss_dssp --HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS---S-EEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCC--CeEEEEeCHHHHHHHhhC
Confidence 89999999999999999954311 12222233333444458999996 788874 357889999999998753
Q ss_pred CccceeecccCCCccHHHHHHHHHHHHHhcC
Q 002941 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKD 745 (863)
Q Consensus 715 ~~~~~~~~~~T~~~~pla~AAalAaL~~l~~ 745 (863)
. ..-.+-.+-+.+|+-.++|+.+.+
T Consensus 237 p------l~RalrvdK~tla~L~atL~~Y~~ 261 (367)
T PF03841_consen 237 P------LGRALRVDKLTLAALEATLRLYLD 261 (367)
T ss_dssp H------HTTT-B--HHHHHHHHHHHHH---
T ss_pred C------CcceEeeCHHHHHHHHHHHHHHHH
Confidence 2 334456688999999999998753
No 450
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=96.01 E-value=0.19 Score=58.02 Aligned_cols=65 Identities=15% Similarity=0.090 Sum_probs=44.9
Q ss_pred ChhhHHHHHHHHhhccCCCCC-----CCCCC-CCCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 9 YPDHHRRILLRLFHHSTFHPQ-----PLDLP-LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|-.++-..+++++..+..... |.-.+ .+|+.|-|+..-.|||||++|.-|+..|. .+|+||...-
T Consensus 87 yt~~di~~lr~~l~~~~~~~~~~~~~~~r~~~~~~~vIav~n~KGGvGKTTta~nLA~~LA-----~~G~rVLlID 157 (405)
T PRK13869 87 YTLGQINEIRQMLAGSTRGRESIDFVPHRRGSEHLQVIAVTNFKGGSGKTTTSAHLAQYLA-----LQGYRVLAVD 157 (405)
T ss_pred ecHHHHHHHHHHHHhhccccccccccCCCCCCCCceEEEEEcCCCCCCHHHHHHHHHHHHH-----hcCCceEEEc
Confidence 555555566666654211111 11111 14678999999999999999999999998 8899997664
No 451
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=95.98 E-value=0.025 Score=64.70 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=34.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (863)
|+.|-|+|. +|+||||+...|+..|+ ++|++|+..|=
T Consensus 1 MkVi~IvG~-sgSGKTTLiekLI~~L~-----~rG~rVavIKH 37 (452)
T PRK14495 1 MRVYGIIGW-KDAGKTGLVERLVAAIA-----ARGFSVSTVKH 37 (452)
T ss_pred CcEEEEEec-CCCCHHHHHHHHHHHHH-----hCCCeEEEEec
Confidence 678999998 69999999999999999 99999999994
No 452
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.89 E-value=0.19 Score=59.19 Aligned_cols=85 Identities=15% Similarity=0.104 Sum_probs=46.4
Q ss_pred CceEEEeCCCcccccCCCCCcH---hHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCC-CHHH
Q 002941 221 EILCIVETAGGVASPGPSGSLQ---CDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV-NEVP 296 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~---~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~-~~~~ 296 (863)
.|+|||.++|. .+... ... ..|......-.+||++...+ .......++.++. ..+.|+|||+.++. ....
T Consensus 429 ~DLVLIDTaG~--s~~D~-~l~eeL~~L~aa~~~a~lLVLpAtss-~~Dl~eii~~f~~--~~~~gvILTKlDEt~~lG~ 502 (559)
T PRK12727 429 YKLVLIDTAGM--GQRDR-ALAAQLNWLRAARQVTSLLVLPANAH-FSDLDEVVRRFAH--AKPQGVVLTKLDETGRFGS 502 (559)
T ss_pred CCEEEecCCCc--chhhH-HHHHHHHHHHHhhcCCcEEEEECCCC-hhHHHHHHHHHHh--hCCeEEEEecCcCccchhH
Confidence 39999999984 23211 111 11222234567788876643 3333334444443 46899999998543 3333
Q ss_pred HHH-hhcCCCCeeecC
Q 002941 297 LMS-YLRNRVPVLVLP 311 (863)
Q Consensus 297 ~~~-~~~~~~pvl~~p 311 (863)
+.+ ..+.++||..+-
T Consensus 503 aLsv~~~~~LPI~yvt 518 (559)
T PRK12727 503 ALSVVVDHQMPITWVT 518 (559)
T ss_pred HHHHHHHhCCCEEEEe
Confidence 332 223588887653
No 453
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=95.84 E-value=0.18 Score=54.75 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=31.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|+.|-|++ -.|||||++|..|+.+|. ++|+||..+-
T Consensus 1 m~~iav~~-KGGVGKTT~~~nLA~~La-----~~G~rVLlID 36 (274)
T PRK13235 1 MRKVAIYG-KGGIGKSTTTQNTVAGLA-----EMGKKVMVVG 36 (274)
T ss_pred CCEEEEeC-CCCccHHHHHHHHHHHHH-----HCCCcEEEEe
Confidence 45677776 899999999999999999 8999998774
No 454
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.82 E-value=0.15 Score=58.17 Aligned_cols=85 Identities=16% Similarity=0.079 Sum_probs=46.9
Q ss_pred CceEEEeCCCcccccCCCCC--cHhHHhhhcCC--CEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCC-CHH
Q 002941 221 EILCIVETAGGVASPGPSGS--LQCDLYRPFRL--PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV-NEV 295 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~--~~~dla~~l~~--pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~-~~~ 295 (863)
+|+|||.++|.. +.+... -...+....+. .++||.++..+. +.....++.+ ..+.+-|+|+-+.++. ..-
T Consensus 255 ~DlVLIDTaGr~--~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~-~~~~~~~~~~--~~~~~~~~I~TKlDet~~~G 329 (388)
T PRK12723 255 FDLVLVDTIGKS--PKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT-SDVKEIFHQF--SPFSYKTVIFTKLDETTCVG 329 (388)
T ss_pred CCEEEEcCCCCC--ccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH-HHHHHHHHHh--cCCCCCEEEEEeccCCCcch
Confidence 499999999954 321100 11233333333 489999987762 2222222222 3567899999988543 222
Q ss_pred HHHHh-hcCCCCeeec
Q 002941 296 PLMSY-LRNRVPVLVL 310 (863)
Q Consensus 296 ~~~~~-~~~~~pvl~~ 310 (863)
.+-+. ...++|+.-+
T Consensus 330 ~~l~~~~~~~~Pi~yi 345 (388)
T PRK12723 330 NLISLIYEMRKEVSYV 345 (388)
T ss_pred HHHHHHHHHCCCEEEE
Confidence 22222 1257888653
No 455
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=95.79 E-value=0.1 Score=56.73 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=29.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCC-CCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSS-ANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~-~g~~v~~~K 78 (863)
+.|-|++ -.|||||+++.-|+.+|. + +|+||..+-
T Consensus 3 ~vIav~~-KGGVGKTT~a~nLA~~La-----~~~G~rvLliD 38 (275)
T PRK13233 3 RKIAIYG-KGGIGKSTTTQNTAAAMA-----YFHDKKVFIHG 38 (275)
T ss_pred eEEEEEc-CCCCcHHHHHHHHHHHHH-----HhcCCeEEEec
Confidence 5677774 899999999999999998 7 599998764
No 456
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=95.64 E-value=0.19 Score=57.57 Aligned_cols=66 Identities=14% Similarity=0.074 Sum_probs=45.5
Q ss_pred CChhhHHHHHHHHhhccCCCC---CCCCCC-CCCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 8 HYPDHHRRILLRLFHHSTFHP---QPLDLP-LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
=|.+++-+.+...+....... .+.-.+ .+++.|.|++.-.|||||++|..|+.+|. ++|++|...-
T Consensus 71 ~yt~~di~~l~~~~~~~~~~~~~~~~~r~~g~~~~vI~v~n~KGGvGKTT~a~nLA~~La-----~~G~rVLlID 140 (387)
T TIGR03453 71 SYTLEQINELRRHLAQRGREARRYLPHRRGGEHLQVIAVTNFKGGSGKTTTAAHLAQYLA-----LRGYRVLAID 140 (387)
T ss_pred eeCHHHHHHHHHHHHhccccccccCCCcCCCCCceEEEEEccCCCcCHHHHHHHHHHHHH-----hcCCCEEEEe
Confidence 356666666655554421111 111111 24678999999999999999999999998 8899997765
No 457
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.63 E-value=0.17 Score=57.64 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=33.8
Q ss_pred CCCCCCCCCC-eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 29 QPLDLPLSHP-TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 29 ~~~~~~~~~~-~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.++.+....| .|+.+|- .|+||||.++=|+.+|+ ++|++|...-
T Consensus 91 ~~~~l~~~~P~vImmvGL-QGsGKTTt~~KLA~~lk-----k~~~kvllVa 135 (451)
T COG0541 91 SELNLAKKPPTVILMVGL-QGSGKTTTAGKLAKYLK-----KKGKKVLLVA 135 (451)
T ss_pred cccccCCCCCeEEEEEec-cCCChHhHHHHHHHHHH-----HcCCceEEEe
Confidence 3444432233 5888888 99999999999999999 8898887654
No 458
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.58 E-value=0.17 Score=57.32 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=30.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.+.|+|. +|||||++.+.|+..+. ++|.+|++.-
T Consensus 206 ~~ii~lvGp-tGvGKTTt~akLA~~l~-----~~g~~V~lIt 241 (407)
T PRK12726 206 HRIISLIGQ-TGVGKTTTLVKLGWQLL-----KQNRTVGFIT 241 (407)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 456889997 69999999999999987 7888888754
No 459
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=95.55 E-value=0.078 Score=58.44 Aligned_cols=37 Identities=11% Similarity=0.263 Sum_probs=31.9
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+|+.|-|+ --.|||||+++.-|+.+|. ++|+||..+-
T Consensus 3 ~~~~iai~-~KGGvGKTt~~~nLa~~la-----~~g~kVLliD 39 (295)
T PRK13234 3 KLRQIAFY-GKGGIGKSTTSQNTLAALV-----EMGQKILIVG 39 (295)
T ss_pred cceEEEEE-CCCCccHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 46667676 6899999999999999999 9999998774
No 460
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=95.51 E-value=0.66 Score=52.52 Aligned_cols=222 Identities=11% Similarity=0.008 Sum_probs=106.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchh---hhc
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA---DLL 678 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~---e~~ 678 (863)
+.+|+.+++ .+++.+.+|+.-+- +..| + -++-+.++.++|++|||+.|+--++ |.--+-.+-.. ...
T Consensus 142 ~~ie~~i~~----~G~~~iLcvlttts--cfap-r--~~D~i~~IakiC~~~~IPhlvNnAY-gvQ~~~~~~~i~~a~~~ 211 (389)
T PF05889_consen 142 EAIEAKIEE----LGADNILCVLTTTS--CFAP-R--LPDDIEEIAKICKEYDIPHLVNNAY-GVQSSKCMHLIQQAWRV 211 (389)
T ss_dssp HHHHHHHHH----HCGGGEEEEEEESS--TTTT-B------HHHHHHHHHHHT--EEEEGTT-TTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHH----hCCCCeEEEEEecC--ccCC-C--CCccHHHHHHHHHHcCCceEEccch-hhhHHHHHHHHHHHHhc
Confidence 445666653 35566777777663 3333 2 3345899999999999999999988 55000000000 012
Q ss_pred CCCC-cEEEecccc----CCCCCCceeee-ccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhH
Q 002941 679 GCVP-DIACYGKLL----TGGVIPLAATL-ATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (863)
Q Consensus 679 gv~P-Divt~sKgL----ggG~~Pigav~-~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l 752 (863)
|..| ++--+.|-+ ||+ .+. ..+..++.+... +-+-.+....+- ...+|..|=...+..-+
T Consensus 212 GRvda~vqS~dkNF~VPvGga-----i~As~~~~~i~~vs~~------YpGRas~sp~ld---~~itLl~LG~~g~~~ll 277 (389)
T PF05889_consen 212 GRVDAFVQSTDKNFMVPVGGA-----IMASFDPSGILAVSKE------YPGRASASPSLD---LFITLLSLGCTGYGALL 277 (389)
T ss_dssp STCSEEEEEHHHHHCEESSHE-----EEEESSHHHHHHHHHT------SHSHBTSHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred CCcceeeeecCCCEEecCCCc-----EEEecCHHHHHHHHHH------hhhhhhcccchH---HHHHHHHHhhhHHHHHH
Confidence 3222 222345533 222 122 245555555431 111111111111 22223222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE----ecC----
Q 002941 753 IPERRILRELWDLELIQQISSHR-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR----PLG---- 823 (863)
Q Consensus 753 ~~~~~~l~~~l~~~l~~~~~~~p-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~----p~g---- 823 (863)
.++ ...-.++.+++.++.+++. .+.+....-..+++++..-... .......+...|+.+||-=. +.+
T Consensus 278 ~~r-~~~f~~l~erl~~~aee~~e~ll~~p~N~is~a~tl~~l~~~---~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~t 353 (389)
T PF05889_consen 278 KER-KASFPYLKERLKKWAEEVGERLLETPRNHISMAFTLDTLYEI---SQKDGTFLGSMLFKRGVSGIRVVTPGGKKQT 353 (389)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHTTEEBSSSTT-SSEEEEE-TTCCTC---CSSHHHHHHHHHHHTTEESSEEEETSSCEEE
T ss_pred HHH-HHHHHHHHHHHHHHHHHhhhhhcCCCCCCeeEEEECccchhh---ccchhhhHHHHHHhCCcccceeeccCCCccc
Confidence 222 2233445555566666665 3445555556777777643210 01245678889999876321 111
Q ss_pred --------CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 824 --------NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 824 --------~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.-+.+...+-+++||||.++++|+++++
T Consensus 354 sh~~~yp~~Ylt~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 354 SHSSNYPCPYLTAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp TTSS--SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred ccCCCCchHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 3455555667899999999999999874
No 461
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=95.46 E-value=0.016 Score=61.71 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=35.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|+.|.|.|+..|||||++|++|+.+|. +.|++|...-
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~-----~~G~~VlaID 37 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALA-----RLGESVLAID 37 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHH-----HCCCcEEEEe
Confidence 789999999999999999999999999 8999998776
No 462
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=95.41 E-value=2.3 Score=49.19 Aligned_cols=201 Identities=14% Similarity=0.090 Sum_probs=84.4
Q ss_pred CCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecc----cccccccCCcchhhhcCCCCcEEE-ecccc
Q 002941 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV----FTGFWRLGVETTADLLGCVPDIAC-YGKLL 691 (863)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV----~TGfGRtG~~~a~e~~gv~PDivt-~sKgL 691 (863)
.+++|+|+++-- +.-|.+-. ++++.++++++|+++|+ -+ .+++-+-|.+ | .||++ .+|.+
T Consensus 195 ~~~~a~v~vq~P--n~~G~~ed----~~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pge~------G--ADI~vg~~Q~f 259 (429)
T PF02347_consen 195 DDDTAAVMVQNP--NTFGVFED----IKEIADIAHAAGALVIV-GADPNALGGLKSPGEY------G--ADIVVGEHQTF 259 (429)
T ss_dssp STTEEEEEEESS---TTSB--T----HHHHHHHHHHTT-EEEE-CGGCCGCCTC--GGGG------T---SEEEECCTTT
T ss_pred ccCeEEEEeecC--CCCceEee----HHHHHHHHHHcCCEEEE-ecCHHHHhCcCChhhc------C--ccEEeeCCCCC
Confidence 367888888752 45566554 89999999999999987 22 1122112222 2 48873 25644
Q ss_pred C----CCCCCceeeeccHHHHHhhhcC---------Cccceee--------c------ccCCCccHHHHH-HHHHHHHHh
Q 002941 692 T----GGVIPLAATLATNAVFDSFVGD---------SKLKALL--------H------GHSYSAHALGCA-AAAKSIKWF 743 (863)
Q Consensus 692 g----gG~~Pigav~~~~~i~~~l~~~---------~~~~~~~--------~------~~T~~~~pla~A-AalAaL~~l 743 (863)
| +|---.|.+.++++++..+... ++ +++. | .+....|..-+| +|..-+..+
T Consensus 260 g~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~-~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~ 338 (429)
T PF02347_consen 260 GIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGK-RAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYL 338 (429)
T ss_dssp T---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCS-CCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHH
T ss_pred cccCCCCCCCeeeEEEhhhhhhhCCCceeccccccccc-ceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHh
Confidence 3 3313356677788877766431 00 0110 0 011223433333 223333333
Q ss_pred cChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe-c
Q 002941 744 KDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-L 822 (863)
Q Consensus 744 ~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p-~ 822 (863)
=.+++. ++.+..-....++.++| .+... ..+.+. .|+=.-+...+ .....++.+++...|+.... .
T Consensus 339 G~~GL~-~iA~~~~~~A~yl~~~L----~~~~~-~~~~~~-~f~e~v~~~~~------~~~~~~l~~~~~~~gl~~~~~~ 405 (429)
T PF02347_consen 339 GPEGLR-EIAERIHLNAHYLAERL----KKIYG-LPFDNP-FFFEFVVVFSK------DKEVEELLKRGIEGGLNLRYPD 405 (429)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHH----CCTTB-ECSSSS-SBSSEEEEESS-------HHHHHHHHTT----EEEGGG-
T ss_pred CHHHHH-HHHHHHHHHHHHHHHHH----HHhcC-cccCCC-CceeeeeecCC------cHHHHHHHHHHHhcCCCccccC
Confidence 233322 23333333333332232 22210 011111 11111111111 02344466777777755443 2
Q ss_pred CCEEEEecCCCCcHHHHHHHHHHH
Q 002941 823 GNVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 823 g~~lr~~ppl~~t~eeid~~v~~L 846 (863)
.+.+.+.+.=..|+||||.++++|
T Consensus 406 ~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 406 DGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp SSEEEEE--TT--HHHHHHHHH--
T ss_pred CCeEEEEccCCCCHHHHHHHHhcC
Confidence 368888888889999999999875
No 463
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.37 E-value=0.1 Score=60.51 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=30.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
...++++|. ||||||++++.|+..+... +.|.+|+++.
T Consensus 221 ~~~i~~vGp-tGvGKTTt~~kLA~~~~~~---~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGP-TGVGKTTTLAKLAARYALL---YGKKKVALIT 258 (424)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHHHh---cCCCeEEEEE
Confidence 357888899 8999999999998877411 5688999886
No 464
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=95.32 E-value=0.41 Score=50.60 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=34.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
||.|-+.++-.|+||||...+|+..|. ++|.+|..+-
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la-----~~G~~V~lID 37 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELA-----ARGARVALID 37 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 678999999999999999999999999 8999998887
No 465
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.18 E-value=0.25 Score=52.94 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=37.7
Q ss_pred hHHHHHHHHhhccCCCCCCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 12 HHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
..+.++.++++++.. ...|=|||+ .|+|||+++-.|.+.|+ ++|++|+.+-
T Consensus 14 ~~~~ll~~l~~~~g~----------a~~iGiTG~-PGaGKSTli~~l~~~~~-----~~g~~VaVlA 64 (266)
T PF03308_consen 14 EARELLKRLYPHTGR----------AHVIGITGP-PGAGKSTLIDALIRELR-----ERGKRVAVLA 64 (266)
T ss_dssp HHHHHHHHHGGGTT-----------SEEEEEEE--TTSSHHHHHHHHHHHHH-----HTT--EEEEE
T ss_pred HHHHHHHHHHhhcCC----------ceEEEeeCC-CCCcHHHHHHHHHHHHh-----hcCCceEEEE
Confidence 566778888776422 224789999 89999999999999999 8899988764
No 466
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=95.08 E-value=0.15 Score=54.71 Aligned_cols=88 Identities=15% Similarity=0.220 Sum_probs=55.2
Q ss_pred CCceEEEeCC-----CcccccCCCCCcHhHHhhhcCCCEEEEECCCCC---cHHHHHHHHHHHHhCC-CcEEEEEEcCCC
Q 002941 220 MEILCIVETA-----GGVASPGPSGSLQCDLYRPFRLPGILVGDGRLG---GISGTISAYESLKLRG-YDVVAVVFEDHG 290 (863)
Q Consensus 220 ~~d~~lvEGa-----gg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g---~i~~~~~~~~~~~~~~-~~v~gvi~n~~~ 290 (863)
+.|+++-.-- ||++.|+.++. -=.|++|.++... .-|.+..+++.+..+| .++.|+|.|.-.
T Consensus 116 ~~D~v~yDVLGDVVCGGFamPir~g~---------a~evyIVtSge~mslyAANNI~~~i~~~~~~g~~~l~GiI~N~r~ 186 (273)
T PF00142_consen 116 DYDFVLYDVLGDVVCGGFAMPIREGY---------AQEVYIVTSGEFMSLYAANNICKAIKNFADRGGARLGGIICNSRN 186 (273)
T ss_dssp TSSEEEEEEESSSSCTTTTHHHHTTS----------SEEEEEEBSSHHHHHHHHHHHHHHHHHCTTSS-EEEEEEEE-SS
T ss_pred CCceEEEEEEeeeEEeeeehhhhhcc---------CCEEEEEecCcHHHHHHHHHHHHHHHHHhccCCCceEEEEecCCC
Confidence 4688887654 56666763332 2258889988854 4577777777776554 689999999654
Q ss_pred CCCHHHH-HHhhc-CCCCeee-cCCCCCC
Q 002941 291 LVNEVPL-MSYLR-NRVPVLV-LPPLPQD 316 (863)
Q Consensus 291 ~~~~~~~-~~~~~-~~~pvl~-~p~~~~~ 316 (863)
.++...+ .++.+ .+.||++ ||+.+..
T Consensus 187 ~~~e~~~v~~fa~~~g~~i~~~iPr~~~v 215 (273)
T PF00142_consen 187 VDDEEEIVEDFAERIGTPIIAFIPRSEIV 215 (273)
T ss_dssp STTHHHHHHHHHHHHTSEEEEEE---HHH
T ss_pred CCCchHHHHHHHHHcCCcEEEecCchHHH
Confidence 4444444 44432 3899999 9997654
No 467
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.94 E-value=0.23 Score=51.42 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=27.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+++.|. ||||||+..+-|+..++ .+|.+|...=
T Consensus 3 vi~lvGp-tGvGKTTt~aKLAa~~~-----~~~~~v~lis 36 (196)
T PF00448_consen 3 VIALVGP-TGVGKTTTIAKLAARLK-----LKGKKVALIS 36 (196)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHHH-----HTT--EEEEE
T ss_pred EEEEECC-CCCchHhHHHHHHHHHh-----hccccceeec
Confidence 4778888 99999999999999998 6688887765
No 468
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=94.94 E-value=0.62 Score=49.76 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=31.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.++|.+...|||||++++.|+.+|. ++|.+|..+-
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~-----~~g~~vl~iD 38 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKA-----SKGQKPLCID 38 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHH-----hCCCCEEEEE
Confidence 56888899999999999999999998 8898886654
No 469
>COG2403 Predicted GTPase [General function prediction only]
Probab=94.91 E-value=0.039 Score=61.01 Aligned_cols=63 Identities=22% Similarity=0.349 Sum_probs=47.3
Q ss_pred hhHHHHHHHHhhccC-C---CCCCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 11 DHHRRILLRLFHHST-F---HPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 11 ~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
++--+|+-+++.... + .|...+..+..|.|-|+||.|++|||.||..++|.|+ .+|++|....
T Consensus 96 e~v~~IaS~vLs~GA~f~~~gP~et~~~~ekPviaV~atrtg~GKsaVS~~v~r~l~-----ergyrv~vVr 162 (449)
T COG2403 96 EHVFRIASRVLSAGADFKELGPKETMLKLEKPVIAVTATRTGVGKSAVSRYVARLLR-----ERGYRVCVVR 162 (449)
T ss_pred HHHHHHHHHHHhCCceeEEeCccHHhhhhcCceEEEEEeccccchhHHHHHHHHHHH-----HcCCceEEEe
Confidence 334456666554433 2 2333444456899999999999999999999999999 8999998876
No 470
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.87 E-value=0.77 Score=51.45 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=30.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+-|+|. .|+|||+++..|...|+ .+|.+|+.+.
T Consensus 58 ~igi~G~-~GaGKSTl~~~l~~~l~-----~~g~~v~vi~ 91 (332)
T PRK09435 58 RIGITGV-PGVGKSTFIEALGMHLI-----EQGHKVAVLA 91 (332)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 5888888 99999999999999998 8899998877
No 471
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=94.86 E-value=0.25 Score=51.74 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=56.8
Q ss_pred ceEEEeCC-----CcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcH---HHHHHHHHHHHh-CCCcEEEEEEcCCCCC
Q 002941 222 ILCIVETA-----GGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGI---SGTISAYESLKL-RGYDVVAVVFEDHGLV 292 (863)
Q Consensus 222 d~~lvEGa-----gg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i---~~~~~~~~~~~~-~~~~v~gvi~n~~~~~ 292 (863)
|+++-.=- ||++.|+.++... .+.+|.++.-.++ |.+.-.+.-+.. .+.++.|+|.|.-..+
T Consensus 119 DvviyDVLGDVVCGGFAmPiReg~Ad---------eiyIVtSge~MalYAANNI~kgi~k~a~~~~~rLgGiIcNsr~~~ 189 (278)
T COG1348 119 DVVIYDVLGDVVCGGFAMPIREGYAD---------EIYIVTSGEMMALYAANNIAKGIRKYAKTGGVRLGGIICNSRSVD 189 (278)
T ss_pred CEEEEeccCceeecceeeehhcccCc---------EEEEEecCchHHHHHHHHHHHHHHHHhhcCCcceeeEEecCCCcc
Confidence 77776543 7888898655432 4677888775554 444545544443 5688999999977655
Q ss_pred CHHHHH-Hhhc-CCCCeee-cCCCCCCC
Q 002941 293 NEVPLM-SYLR-NRVPVLV-LPPLPQDS 317 (863)
Q Consensus 293 ~~~~~~-~~~~-~~~pvl~-~p~~~~~~ 317 (863)
+...+. ++.+ .+.|+++ +|+.....
T Consensus 190 ~e~e~v~~fa~~igt~li~~vPr~~ivq 217 (278)
T COG1348 190 RERELVEAFAERLGTQLIHFVPRDNIVQ 217 (278)
T ss_pred cHHHHHHHHHHHhCCceEeeccchHHHH
Confidence 544443 3332 3899999 99876653
No 472
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.84 E-value=0.031 Score=54.67 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=32.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEccccc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQT 82 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~ 82 (863)
|.|.|+|. +++|||+++..|+..|. ++|++|+++|=...
T Consensus 1 pvv~VvG~-~~sGKTTl~~~Li~~l~-----~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGP-KNSGKTTLIRKLINELK-----RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEES-TTSSHHHHHHHHHHHHH-----HTT--EEEEEE-ST
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHh-----HcCCceEEEEEccC
Confidence 56899997 79999999999999999 99999999995444
No 473
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.60 E-value=0.47 Score=46.82 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=28.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.+.|. .|+|||+++..|...+. .+|.++..+.
T Consensus 2 i~~~G~-~GsGKTt~~~~l~~~~~-----~~g~~v~ii~ 34 (148)
T cd03114 2 IGITGV-PGAGKSTLIDALITALR-----ARGKRVAVLA 34 (148)
T ss_pred EEEECC-CCCcHHHHHHHHHHHHH-----HCCCEEEEEE
Confidence 456676 89999999999999998 8899998776
No 474
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=94.57 E-value=0.35 Score=51.33 Aligned_cols=105 Identities=12% Similarity=0.070 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccC--CCCCcHhHHhhhcCCC-EEEEE-------C-CCCCc
Q 002941 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPG--PSGSLQCDLYRPFRLP-GILVG-------D-GRLGG 263 (863)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~--~~~~~~~dla~~l~~p-vilV~-------~-~~~g~ 263 (863)
+.|.+++.+..+. ...|++|||=-|-+...- +--...-++...++-. +++|- . .+.--
T Consensus 118 ~eIk~~i~~~~~~-----------~~~dv~i~EiGGTvGDiEs~pf~EAirq~~~~~g~~n~~~ihvt~vp~~~~~gE~K 186 (255)
T cd03113 118 DEIKERIRRVAEK-----------SGADVVIVEIGGTVGDIESLPFLEAIRQMKLELGRENVLFIHVTLVPYLKAAGELK 186 (255)
T ss_pred HHHHHHHHHhhcc-----------CCCCEEEEEeCCccccccccHHHHHHHHHHHHhCcCcEEEEEEeeeeeecCCCccc
Confidence 4555666655432 256999999766444331 1111223444444422 22221 1 12222
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEcCCC---CCCHHHHHHhhcCCCCeee-cCC
Q 002941 264 ISGTISAYESLKLRGYDVVAVVFEDHG---LVNEVPLMSYLRNRVPVLV-LPP 312 (863)
Q Consensus 264 i~~~~~~~~~~~~~~~~v~gvi~n~~~---~~~~~~~~~~~~~~~pvl~-~p~ 312 (863)
---|.++++.|+++|+++.+||+|... ..+...+..+ +++|+.+ +|.
T Consensus 187 TKPtQhSVeaLRs~GIqPDgIVcRse~pL~e~~keKIAlF--cnVpve~VI~~ 237 (255)
T cd03113 187 TKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALF--CDVPPEAVISA 237 (255)
T ss_pred cCchHHHHHHHHhCCCCCCEEEEeCCCCCchHHHHHHHHh--cCCCHHHeeec
Confidence 456789999999999999999999742 2344445445 7999988 554
No 475
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=94.50 E-value=0.22 Score=60.22 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=35.6
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (863)
+|+.|-|+|. +|+|||++...|+..|+ ++|++|++.|=
T Consensus 9 ~~~vi~ivG~-s~sGKTTlie~li~~L~-----~~G~rVavIKh 46 (597)
T PRK14491 9 SIPLLGFCAY-SGTGKTTLLEQLIPELN-----QRGLRLAVIKH 46 (597)
T ss_pred CccEEEEEcC-CCCCHHHHHHHHHHHHH-----hCCceEEEEEc
Confidence 5788999998 99999999999999999 99999999994
No 476
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.39 E-value=0.53 Score=54.10 Aligned_cols=84 Identities=12% Similarity=0.067 Sum_probs=46.8
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHh---hhc----CCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCC-
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLY---RPF----RLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV- 292 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla---~~l----~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~- 292 (863)
.|++||.++| ..|- +....-.|. +.. ...++||.++..|. +.....+..+ ..+.+-|+|+-+.++.
T Consensus 300 ~D~VLIDTaG--r~~r-d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~-~~~~~~~~~f--~~~~~~glIlTKLDEt~ 373 (432)
T PRK12724 300 SELILIDTAG--YSHR-NLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY-HHTLTVLKAY--ESLNYRRILLTKLDEAD 373 (432)
T ss_pred CCEEEEeCCC--CCcc-CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH-HHHHHHHHHh--cCCCCCEEEEEcccCCC
Confidence 5999999987 3332 112222332 222 33589999977663 2223333333 4567899999988543
Q ss_pred CHHHHHHh-hcCCCCeeec
Q 002941 293 NEVPLMSY-LRNRVPVLVL 310 (863)
Q Consensus 293 ~~~~~~~~-~~~~~pvl~~ 310 (863)
..-.+.+. ...++|+.-+
T Consensus 374 ~~G~il~i~~~~~lPI~yl 392 (432)
T PRK12724 374 FLGSFLELADTYSKSFTYL 392 (432)
T ss_pred CccHHHHHHHHHCCCEEEE
Confidence 22222222 1258998653
No 477
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.22 E-value=1.3 Score=49.64 Aligned_cols=87 Identities=17% Similarity=0.126 Sum_probs=50.0
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhcCCC-EEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCC--CCHHHH
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLP-GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL--VNEVPL 297 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l~~p-vilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~--~~~~~~ 297 (863)
.|++||.++|-.----.-..-..++++.++-. ||+|.|+..| ++..+....-..-++|-+||+-+.+- ..-..|
T Consensus 184 fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG---Qaae~Qa~aFk~~vdvg~vIlTKlDGhakGGgAl 260 (483)
T KOG0780|consen 184 FDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG---QAAEAQARAFKETVDVGAVILTKLDGHAKGGGAL 260 (483)
T ss_pred CcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc---HhHHHHHHHHHHhhccceEEEEecccCCCCCcee
Confidence 69999999874321110112356777777744 8999997655 33333333334558899999987621 111112
Q ss_pred HHhhcCCCCeeec
Q 002941 298 MSYLRNRVPVLVL 310 (863)
Q Consensus 298 ~~~~~~~~pvl~~ 310 (863)
...-.++.||..|
T Consensus 261 SaVaaTksPIiFI 273 (483)
T KOG0780|consen 261 SAVAATKSPIIFI 273 (483)
T ss_pred eehhhhCCCEEEE
Confidence 2111267888754
No 478
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.11 E-value=0.054 Score=58.98 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=33.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (863)
|+.|.|+|. +|+||||++.-|++.|+ ++| +|++.|=
T Consensus 1 M~~i~i~G~-~gSGKTTLi~~Li~~L~-----~~G-~V~~IKh 36 (274)
T PRK14493 1 MKVLSIVGY-KATGKTTLVERLVDRLS-----GRG-RVGTVKH 36 (274)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHH-----hCC-CEEEEEE
Confidence 678999999 69999999999999999 899 8999993
No 479
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=93.91 E-value=5.8 Score=48.14 Aligned_cols=40 Identities=18% Similarity=-0.007 Sum_probs=29.5
Q ss_pred ChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHH
Q 002941 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF 482 (863)
Q Consensus 442 ~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~ 482 (863)
+....++-+.|++++|-+ ...-.|+++||+||-.||.+|+
T Consensus 122 t~lE~~vi~~la~l~G~~-~~~G~~TsGGT~ANl~aL~~AR 161 (608)
T TIGR03811 122 SQMEEEVGKEFATLMGYK-NGWGHIVADGSLANLEGLWYAR 161 (608)
T ss_pred HHHHHHHHHHHHHHhCCC-CCCeEEeCChHHHHHHHHHHHH
Confidence 455666777777877632 1234689999999999999994
No 480
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.65 E-value=0.22 Score=54.53 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=30.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCC-C-CceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-N-KKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~-g-~~v~~~K 78 (863)
...+.|.|. ||||||++++.|+..+. .+ | .+|+++.
T Consensus 194 ~~vi~~vGp-tGvGKTTt~~kLa~~~~-----~~~g~~~V~li~ 231 (282)
T TIGR03499 194 GGVIALVGP-TGVGKTTTLAKLAARFV-----LEHGNKKVALIT 231 (282)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HHcCCCeEEEEE
Confidence 346888898 89999999999999987 54 4 8998887
No 481
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.93 E-value=1.3 Score=54.51 Aligned_cols=84 Identities=15% Similarity=0.247 Sum_probs=46.8
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhc----CCCEEEEECCCCC--cHHHHHHHHHHHHh-CCCcEEEEEEcCCCCC-
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPF----RLPGILVGDGRLG--GISGTISAYESLKL-RGYDVVAVVFEDHGLV- 292 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l----~~pvilV~~~~~g--~i~~~~~~~~~~~~-~~~~v~gvi~n~~~~~- 292 (863)
.|+|||.++| .++.. ...+-++.+.. ...++||.+...+ .++.++ +.++. .+.++-|+||-+.++.
T Consensus 264 ~D~VLIDTAG--Rs~~d-~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~---~~f~~~~~~~i~glIlTKLDEt~ 337 (767)
T PRK14723 264 KHLVLIDTVG--MSQRD-RNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV---HAYRHGAGEDVDGCIITKLDEAT 337 (767)
T ss_pred CCEEEEeCCC--CCccC-HHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH---HHHhhcccCCCCEEEEeccCCCC
Confidence 4999999999 45532 22333333322 2348999986643 233333 33332 2457889999998543
Q ss_pred CHHHHHHh-hcCCCCeeec
Q 002941 293 NEVPLMSY-LRNRVPVLVL 310 (863)
Q Consensus 293 ~~~~~~~~-~~~~~pvl~~ 310 (863)
..-.+-+. ...++||.-|
T Consensus 338 ~~G~iL~i~~~~~lPI~yi 356 (767)
T PRK14723 338 HLGPALDTVIRHRLPVHYV 356 (767)
T ss_pred CccHHHHHHHHHCCCeEEE
Confidence 22222221 1258888754
No 482
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=92.64 E-value=0.5 Score=52.41 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=31.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
-|.++|.|. |++|||+++.-|+.+.. +.|+++.|.-
T Consensus 103 GPrv~vVGp-~d~GKsTl~r~L~nyav-----k~gr~Plfv~ 138 (415)
T KOG2749|consen 103 GPRVMVVGP-TDVGKSTLCRILLNYAV-----KQGRRPLFVE 138 (415)
T ss_pred CCEEEEECC-CccchHHHHHHHHHHHH-----HcCCcceEEE
Confidence 466999997 99999999999999988 8888887765
No 483
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=92.64 E-value=3.2 Score=40.80 Aligned_cols=60 Identities=20% Similarity=0.015 Sum_probs=44.3
Q ss_pred HhHHhhhcCCCEEEEEC-CCCC-cHHHHHHHHHHHHhCCCcEEEEEEcCCCCCCHHHHHHhhc
Q 002941 242 QCDLYRPFRLPGILVGD-GRLG-GISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLR 302 (863)
Q Consensus 242 ~~dla~~l~~pvilV~~-~~~g-~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~~~~~~~~~~~ 302 (863)
--.+++.++.|||=|+. .++- .-...-.+.+.|+..|.+=. +.++-......+.|++||+
T Consensus 81 pP~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~i-f~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 81 PPGFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEI-FEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CchhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCe-EEEECCCCcCHHHHHHHHh
Confidence 35677888999998887 5554 35566667788888888744 7777777778888888864
No 484
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=92.36 E-value=25 Score=40.39 Aligned_cols=206 Identities=15% Similarity=0.112 Sum_probs=103.7
Q ss_pred CCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEE--ecccccccccCCcchhhhcCCCCcEEE-----ecc
Q 002941 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIF--DEVFTGFWRLGVETTADLLGCVPDIAC-----YGK 689 (863)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~--DEV~TGfGRtG~~~a~e~~gv~PDivt-----~sK 689 (863)
.+++++++++=- +..|.... -++.|.+.++++|+++|+ |=+- ++-.-..+-+ -.||++ ||=
T Consensus 208 ~~~~~gv~vQyP--~~~G~~~~---d~~~l~~~~h~~~al~~v~aDpla--L~LL~pPGe~-----GADIvvG~~QrfGv 275 (450)
T COG0403 208 DGDVFGVLVQYP--NTFGIVEE---DLRALIEAAHSAGALVIVAADPLA--LGLLKPPGEF-----GADIVVGSAQRFGV 275 (450)
T ss_pred ccCeEEEEEecC--CCCCccch---hHHHHHHHHhhcCCEEEEEechhH--hhccCCcccc-----CCceEEecCcccCC
Confidence 357888888853 34453332 289999999999998874 4332 3222111111 235543 444
Q ss_pred ccC-CCCCCceeeeccHHHHHhhhcC---------C----------------ccceeecccCCCccHHHHHHHHHHHHHh
Q 002941 690 LLT-GGVIPLAATLATNAVFDSFVGD---------S----------------KLKALLHGHSYSAHALGCAAAAKSIKWF 743 (863)
Q Consensus 690 gLg-gG~~Pigav~~~~~i~~~l~~~---------~----------------~~~~~~~~~T~~~~pla~AAalAaL~~l 743 (863)
.|+ || -=.|...++++..+.+... + +.++.. .-..|.+=+|.+-+..-.+
T Consensus 276 PmgfGG-Phag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATS---NICTnQaLlA~~As~y~~~ 351 (450)
T COG0403 276 PMGFGG-PHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATS---NICTNQALLALAASMYAVY 351 (450)
T ss_pred CcCCCC-cceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccch---hhhHHHHHHHHHHHHHHHH
Confidence 444 44 2345566777776655321 0 000110 0112222222222222222
Q ss_pred cChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC
Q 002941 744 KDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG 823 (863)
Q Consensus 744 ~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g 823 (863)
.-++=+.++.++.-++...+.++ +++......+...-.|--+.+.-+. .....+..+....|+-++...
T Consensus 352 hGp~GLk~iA~r~~~~a~~la~~----L~~~~~g~~~~~~~fFdt~~v~~~~-------~~~~~l~~~~~~~G~~L~~~~ 420 (450)
T COG0403 352 HGPQGLKEIAERIHRLAAYLAAG----LKEIGAGVELVFDHFFDTFTVRVPE-------EVAEALLAAAIAGGINLRRVD 420 (450)
T ss_pred hChHHHHHHHHHHHHHHHHHHHH----HhhcCCceEeccccceeeEEEecch-------hHHHHHHHHHHhcCCceeeec
Confidence 23332333444444444444333 2322221222222333333333221 246667788888999888754
Q ss_pred -CEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 824 -NVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 824 -~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
..+-++..-++|+++|+.+++.+...
T Consensus 421 ~~~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 421 ADTVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred CCceEEEeecccCHHHHHHHHHHHhhh
Confidence 56777767778999999999988764
No 485
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=92.35 E-value=0.56 Score=48.13 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=26.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+=|.|+ .|||||++..-+++.|+ .+ ++++..+
T Consensus 15 ~i~v~Gp-~GSGKTaLie~~~~~L~-----~~-~~~aVI~ 47 (202)
T COG0378 15 RIGVGGP-PGSGKTALIEKTLRALK-----DE-YKIAVIT 47 (202)
T ss_pred EEEecCC-CCcCHHHHHHHHHHHHH-----hh-CCeEEEe
Confidence 3444454 99999999999999997 55 8888887
No 486
>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]
Probab=92.03 E-value=8.1 Score=42.22 Aligned_cols=218 Identities=15% Similarity=0.131 Sum_probs=126.2
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTG 693 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLgg 693 (863)
+++.||.|++..| |--.|-..- +.++-..-+..|+++-+|=+| .+|-. ..-...||+ |..|. =|=+..
T Consensus 211 ngDeiA~v~fSGv-qyYTGQ~Fd----i~aIT~Agq~kgc~VGfDLAH-AvgNV--pL~LHdWgV--DFACWCSYKYlna 280 (465)
T KOG3846|consen 211 NGDEIALVCFSGV-QYYTGQYFD----IGAITFAGQFKGCLVGFDLAH-AVGNV--PLQLHDWGV--DFACWCSYKYLNA 280 (465)
T ss_pred cCCeEEEEEeecc-eeecccccc----hhhhhhcccCCCcEechhhhh-hhcCC--ceEEeecCC--ceEEEeeeccccc
Confidence 5789999999998 877786665 566666667779999999888 45432 222233444 65544 253321
Q ss_pred CCCCceeeeccHHHHH--------hhhcC--Cc--------cceeecccCCCccHH-HHHHHHHHHHHhcChhhHHhHHH
Q 002941 694 GVIPLAATLATNAVFD--------SFVGD--SK--------LKALLHGHSYSAHAL-GCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 694 G~~Pigav~~~~~i~~--------~l~~~--~~--------~~~~~~~~T~~~~pl-a~AAalAaL~~l~~~~l~~~l~~ 754 (863)
|-=-||...+.++... ++... .+ ..+...|+-.+..|+ ..+|.+++|+++..-. ..++++
T Consensus 281 GaGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~-~~~lRk 359 (465)
T KOG3846|consen 281 GAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFN-INELRK 359 (465)
T ss_pred CCCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhh-HHHHhh
Confidence 1112344444333222 11110 00 011112333334444 4455577888875433 567777
Q ss_pred HHHHHHHHHHHHHHHHH-hcCCC------e-----eEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec
Q 002941 755 ERRILRELWDLELIQQI-SSHRT------V-----QRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL 822 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~-~~~p~------v-----~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~ 822 (863)
+.-.+..++...+.... .++|. + ..+.-+|.-+.+.|..+ ...+.++|-++|+++--.
T Consensus 360 rS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp----------~~~vfqeL~krGv~~DkR 429 (465)
T KOG3846|consen 360 RSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSSP----------TPKVFQELHKRGVIGDKR 429 (465)
T ss_pred hhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCCC----------chHHHHHHHHcCeecccc
Confidence 77777666644332222 22221 1 12233455555555443 357899999999998643
Q ss_pred -CCEEEEecCC-CCcHHHHHHHHHHHHHHHHHHH
Q 002941 823 -GNVIYLMCGP-CSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 823 -g~~lr~~ppl-~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.|++|+.|-. ..+-.|+-.++.+|.++++.++
T Consensus 430 ~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~e 463 (465)
T KOG3846|consen 430 RPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKLE 463 (465)
T ss_pred CCCceEeecchhhccHHHHHHHHHHHHHHHHHhh
Confidence 4899998744 4688999999999998887654
No 487
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.00 E-value=1.8 Score=49.37 Aligned_cols=81 Identities=19% Similarity=0.162 Sum_probs=47.6
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhc----CCCEEEEECCCCCcHHHHH-HHHHHHHhCCCcEEEEEEcCCCCC---
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPF----RLPGILVGDGRLGGISGTI-SAYESLKLRGYDVVAVVFEDHGLV--- 292 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l----~~pvilV~~~~~g~i~~~~-~~~~~~~~~~~~v~gvi~n~~~~~--- 292 (863)
+|++||.++| .++. +.....+|...+ .+-+-||.+.. +=...+ ..++.+ +-+++.|+||-+.++.
T Consensus 282 ~d~ILVDTaG--rs~~-D~~~i~el~~~~~~~~~i~~~Lvlsat--~K~~dlkei~~~f--~~~~i~~~I~TKlDET~s~ 354 (407)
T COG1419 282 CDVILVDTAG--RSQY-DKEKIEELKELIDVSHSIEVYLVLSAT--TKYEDLKEIIKQF--SLFPIDGLIFTKLDETTSL 354 (407)
T ss_pred CCEEEEeCCC--CCcc-CHHHHHHHHHHHhccccceEEEEEecC--cchHHHHHHHHHh--ccCCcceeEEEcccccCch
Confidence 3999999999 5554 333334444333 56688888854 222222 233333 3468999999988543
Q ss_pred -CHHHHHHhhcCCCCeeec
Q 002941 293 -NEVPLMSYLRNRVPVLVL 310 (863)
Q Consensus 293 -~~~~~~~~~~~~~pvl~~ 310 (863)
|.-.+... ++.||.-+
T Consensus 355 G~~~s~~~e--~~~PV~Yv 371 (407)
T COG1419 355 GNLFSLMYE--TRLPVSYV 371 (407)
T ss_pred hHHHHHHHH--hCCCeEEE
Confidence 33334433 68898643
No 488
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=91.96 E-value=0.18 Score=51.45 Aligned_cols=36 Identities=8% Similarity=0.303 Sum_probs=30.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
..+++++|. +|+|||.++.+++..+. ++|++|.|++
T Consensus 47 ~~~l~l~G~-~G~GKThLa~ai~~~~~-----~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGP-PGTGKTHLAVAIANEAI-----RKGYSVLFIT 82 (178)
T ss_dssp --EEEEEES-TTSSHHHHHHHHHHHHH-----HTT--EEEEE
T ss_pred CeEEEEEhh-HhHHHHHHHHHHHHHhc-----cCCcceeEee
Confidence 457999997 99999999999999998 8999999998
No 489
>PRK08506 replicative DNA helicase; Provisional
Probab=91.84 E-value=1.1 Score=52.68 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=31.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.++|.|..+|+|||++++-++.... ++|.+|.||=
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~-----~~g~~V~~fS 227 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKAL-----NQDKGVAFFS 227 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHH-----hcCCcEEEEe
Confidence 4899999999999999999998876 7899999985
No 490
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.65 E-value=1.6 Score=51.20 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=27.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCC-CceeEE
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSAN-KKFVYL 77 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g-~~v~~~ 77 (863)
..+.+.|. +||||||.++-|+..+.. ++| ++|+..
T Consensus 257 ~Vi~LvGp-nGvGKTTTiaKLA~~~~~----~~G~~kV~LI 292 (484)
T PRK06995 257 GVFALMGP-TGVGKTTTTAKLAARCVM----RHGASKVALL 292 (484)
T ss_pred cEEEEECC-CCccHHHHHHHHHHHHHH----hcCCCeEEEE
Confidence 46889998 899999999999988742 444 467643
No 491
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.50 E-value=3.1 Score=46.26 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=29.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
.++++|. .|+||||..+=|++.|+ ++|++|..-
T Consensus 141 Vil~vGV-NG~GKTTTIaKLA~~l~-----~~g~~Vlla 173 (340)
T COG0552 141 VILFVGV-NGVGKTTTIAKLAKYLK-----QQGKSVLLA 173 (340)
T ss_pred EEEEEec-CCCchHhHHHHHHHHHH-----HCCCeEEEE
Confidence 5899999 69999999999999999 999999654
No 492
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.09 E-value=5.1 Score=45.69 Aligned_cols=87 Identities=15% Similarity=0.239 Sum_probs=47.7
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhh--hcCCC--EEEEECCCCC--cHHHHHHHHHHHHhC--C--CcEEEEEEcCCC
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYR--PFRLP--GILVGDGRLG--GISGTISAYESLKLR--G--YDVVAVVFEDHG 290 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~--~l~~p--vilV~~~~~g--~i~~~~~~~~~~~~~--~--~~v~gvi~n~~~ 290 (863)
.|++||.++| .+|... ...-.++. ..+.| ++||.++..+ .++.++..+..+... + .++.|+||-+.+
T Consensus 216 ~DlVLIDTaG--~~~~d~-~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlD 292 (374)
T PRK14722 216 KHMVLIDTIG--MSQRDR-TVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLD 292 (374)
T ss_pred CCEEEEcCCC--CCcccH-HHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccc
Confidence 4999999998 555422 22222222 22333 6888886644 345555555444211 1 257899999885
Q ss_pred CC-CHHHHHH-hhcCCCCeeec
Q 002941 291 LV-NEVPLMS-YLRNRVPVLVL 310 (863)
Q Consensus 291 ~~-~~~~~~~-~~~~~~pvl~~ 310 (863)
+. ..-.+.+ ..+.++||.-+
T Consensus 293 Et~~~G~~l~~~~~~~lPi~yv 314 (374)
T PRK14722 293 EASNLGGVLDTVIRYKLPVHYV 314 (374)
T ss_pred cCCCccHHHHHHHHHCcCeEEE
Confidence 43 2222222 22258898754
No 493
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=90.93 E-value=0.34 Score=49.13 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=32.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
++.+.|+|. +|+|||++...|++.|. .+|++|+..|
T Consensus 6 ~~ii~ivG~-sgsGKTTLi~~li~~l~-----~~g~~vg~Ik 41 (173)
T PRK10751 6 IPLLAIAAW-SGTGKTTLLKKLIPALC-----ARGIRPGLIK 41 (173)
T ss_pred ceEEEEECC-CCChHHHHHHHHHHHHh-----hcCCeEEEEE
Confidence 456788886 99999999999999998 8899999999
No 494
>PRK09165 replicative DNA helicase; Provisional
Probab=90.57 E-value=1.3 Score=52.49 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=28.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCC----------CCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSP----------TSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~----------~~~~g~~v~~~K 78 (863)
.++|.+..+|+|||++++-++....... +..+|.+|.||=
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fS 267 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFS 267 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEe
Confidence 4788888899999999998887764110 001377888884
No 495
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=90.32 E-value=0.33 Score=48.41 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=30.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.|+|||. +|+|||+++.+|.+.|. .+|.++.++-
T Consensus 4 vIwltGl-sGsGKtTlA~~L~~~L~-----~~g~~~~~LD 37 (156)
T PF01583_consen 4 VIWLTGL-SGSGKTTLARALERRLF-----ARGIKVYLLD 37 (156)
T ss_dssp EEEEESS-TTSSHHHHHHHHHHHHH-----HTTS-EEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----HcCCcEEEec
Confidence 4889998 89999999999999999 8999998887
No 496
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=90.20 E-value=0.32 Score=53.94 Aligned_cols=64 Identities=27% Similarity=0.253 Sum_probs=43.4
Q ss_pred CEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCC-CH--H--------------HHHHhhcCCCCeeecCCCC
Q 002941 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV-NE--V--------------PLMSYLRNRVPVLVLPPLP 314 (863)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~-~~--~--------------~~~~~~~~~~pvl~~p~~~ 314 (863)
-+++|.....-.+..+.-.++.|+..|+++.+||+|++-++ .. . .+.+.+ .++||.-+|..+
T Consensus 209 ~~~lV~~pE~l~i~Et~r~~~~L~~~gi~v~~vVvNrvlp~~~~~c~~~~~r~~~Q~~~l~~i~~~f-~~~~v~~vp~~~ 287 (305)
T PF02374_consen 209 SFRLVTNPEPLAIAETERLLTELKLYGIPVDAVVVNRVLPEEEDDCPFCAARRKEQQKYLAEIEESF-PDLPVVKVPLLP 287 (305)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEEE-TTCSTTSHHHHHHHHHHHHHHHHHHHHT-TTSEEEEEE--S
T ss_pred EEEEEecCCcchHHHHHHHHHHHHhcCCccCeEEEEccccccccchHHHHHHHHHHHHHHHHHHHHh-cCCCEEEecCCC
Confidence 47899998888999999999999999999999999987221 11 1 222222 368887787766
Q ss_pred CC
Q 002941 315 QD 316 (863)
Q Consensus 315 ~~ 316 (863)
..
T Consensus 288 ~e 289 (305)
T PF02374_consen 288 EE 289 (305)
T ss_dssp S-
T ss_pred CC
Confidence 53
No 497
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.15 E-value=5.2 Score=43.62 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=30.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.+.+.|. +|+|||++...|+..+. .+|.+|++.-
T Consensus 76 ~~i~~~G~-~g~GKTtl~~~l~~~l~-----~~~~~v~~i~ 110 (270)
T PRK06731 76 QTIALIGP-TGVGKTTTLAKMAWQFH-----GKKKTVGFIT 110 (270)
T ss_pred CEEEEECC-CCCcHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 56888888 99999999999999987 6787887765
No 498
>PRK15453 phosphoribulokinase; Provisional
Probab=90.04 E-value=0.41 Score=52.14 Aligned_cols=40 Identities=18% Similarity=0.304 Sum_probs=31.6
Q ss_pred CCCCCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 33 LPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 33 ~~~~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|...++.|-|+|+ +|+|||+++..|...|. +.+.++.++.
T Consensus 1 Ms~k~piI~ItG~-SGsGKTTva~~l~~if~-----~~~~~~~vi~ 40 (290)
T PRK15453 1 MSAKHPIIAVTGS-SGAGTTTVKRAFEKIFR-----RENINAAVVE 40 (290)
T ss_pred CCCCCcEEEEECC-CCCCHHHHHHHHHHHHh-----hcCCCeEEEe
Confidence 3345678899997 99999999999999998 6676655444
No 499
>PRK06749 replicative DNA helicase; Provisional
Probab=89.81 E-value=2.2 Score=49.65 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=31.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.|.|..+++|||++++-++.... ++|.+|.+|=
T Consensus 187 ~LiiIaarPgmGKTafal~ia~~~a-----~~g~~v~~fS 221 (428)
T PRK06749 187 DFVVLGARPSMGKTAFALNVGLHAA-----KSGAAVGLFS 221 (428)
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHH-----hcCCCEEEEE
Confidence 4899999999999999999999887 7789999985
No 500
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=89.75 E-value=0.4 Score=54.57 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=35.0
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (863)
.|+.|-|+|. +|+|||++...|++.|+ ++|++|++.|=
T Consensus 204 ~~~~~~~~g~-~~~GKtt~~~~l~~~l~-----~~g~~v~~iKh 241 (366)
T PRK14489 204 APPLLGVVGY-SGTGKTTLLEKLIPELI-----ARGYRIGLIKH 241 (366)
T ss_pred CccEEEEecC-CCCCHHHHHHHHHHHHH-----HcCCEEEEEEE
Confidence 4678999996 99999999999999999 99999999993
Done!