Query 002941
Match_columns 863
No_of_seqs 400 out of 3985
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 07:22:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a0g_A Adenosylmethionine-8-am 100.0 5E-123 2E-127 1136.3 55.8 813 11-853 7-828 (831)
2 4e3q_A Pyruvate transaminase; 100.0 2.6E-82 8.9E-87 732.2 35.6 442 349-854 23-469 (473)
3 4atq_A 4-aminobutyrate transam 100.0 2.6E-75 8.7E-80 671.4 43.0 399 376-852 47-454 (456)
4 4ao9_A Beta-phenylalanine amin 100.0 1.9E-68 6.5E-73 612.3 44.3 419 331-855 25-448 (454)
5 3i5t_A Aminotransferase; pyrid 100.0 8.2E-65 2.8E-69 588.9 42.7 440 351-855 12-456 (476)
6 3hmu_A Aminotransferase, class 100.0 4.1E-65 1.4E-69 590.8 35.0 434 353-855 15-454 (472)
7 4a6r_A Omega transaminase; tra 100.0 4E-61 1.4E-65 554.7 41.9 438 352-855 9-451 (459)
8 3gju_A Putative aminotransfera 100.0 5E-61 1.7E-65 554.0 39.0 441 352-854 8-457 (460)
9 3tfu_A Adenosylmethionine-8-am 100.0 5.4E-60 1.8E-64 545.7 37.8 419 353-854 33-454 (457)
10 3dod_A Adenosylmethionine-8-am 100.0 7.3E-59 2.5E-63 533.9 37.3 436 352-854 4-444 (448)
11 3n5m_A Adenosylmethionine-8-am 100.0 1.2E-57 4.2E-62 523.8 38.4 430 352-852 11-451 (452)
12 3oks_A 4-aminobutyrate transam 100.0 8.4E-57 2.9E-61 517.8 42.4 403 376-852 44-450 (451)
13 4ffc_A 4-aminobutyrate aminotr 100.0 1.1E-56 3.9E-61 517.2 42.5 399 376-853 47-449 (453)
14 3i4j_A Aminotransferase, class 100.0 5E-53 1.7E-57 481.8 39.4 416 359-853 2-428 (430)
15 1z7d_A Ornithine aminotransfer 100.0 2E-51 6.9E-56 470.6 40.5 380 376-853 48-429 (433)
16 2yky_A Beta-transaminase; tran 100.0 2.1E-55 7E-60 507.0 0.0 418 333-855 40-462 (465)
17 2oat_A Ornithine aminotransfer 100.0 4.9E-51 1.7E-55 468.4 36.1 378 376-852 59-438 (439)
18 3l44_A Glutamate-1-semialdehyd 100.0 3.2E-50 1.1E-54 459.2 42.3 389 375-854 37-431 (434)
19 3a8u_X Omega-amino acid--pyruv 100.0 3.4E-51 1.2E-55 469.6 32.4 434 353-853 11-447 (449)
20 3k28_A Glutamate-1-semialdehyd 100.0 1.6E-49 5.4E-54 453.3 39.2 387 375-853 35-427 (429)
21 4e77_A Glutamate-1-semialdehyd 100.0 5E-49 1.7E-53 448.9 40.9 387 375-852 35-428 (429)
22 1ohv_A 4-aminobutyrate aminotr 100.0 3.6E-50 1.2E-54 465.5 30.7 395 383-853 51-471 (472)
23 3dxv_A Alpha-amino-epsilon-cap 100.0 1.1E-48 3.6E-53 447.2 37.7 396 376-855 26-427 (439)
24 3nx3_A Acoat, acetylornithine 100.0 1.5E-48 5.1E-53 439.3 37.1 374 376-852 19-394 (395)
25 2pb2_A Acetylornithine/succiny 100.0 2.4E-48 8.2E-53 443.0 37.8 394 353-853 24-418 (420)
26 3fq8_A Glutamate-1-semialdehyd 100.0 2.4E-48 8.1E-53 442.8 37.3 388 375-852 34-426 (427)
27 2cjg_A L-lysine-epsilon aminot 100.0 3.3E-48 1.1E-52 445.9 38.2 397 383-853 41-448 (449)
28 1zod_A DGD, 2,2-dialkylglycine 100.0 1.7E-47 5.9E-52 436.1 37.2 402 376-853 26-432 (433)
29 2epj_A Glutamate-1-semialdehyd 100.0 9E-47 3.1E-51 430.9 37.7 388 376-853 39-431 (434)
30 1s0a_A Adenosylmethionine-8-am 100.0 4.3E-46 1.5E-50 424.4 41.1 416 356-853 8-424 (429)
31 2e7u_A Glutamate-1-semialdehyd 100.0 9.5E-46 3.3E-50 421.2 36.6 384 376-850 35-424 (424)
32 2cy8_A D-phgat, D-phenylglycin 100.0 5.8E-45 2E-49 418.5 38.4 421 341-855 5-437 (453)
33 2eo5_A 419AA long hypothetical 100.0 8.5E-44 2.9E-48 405.0 33.4 387 376-853 25-418 (419)
34 3ruy_A Ornithine aminotransfer 100.0 1.1E-42 3.8E-47 390.6 38.2 372 376-850 19-391 (392)
35 4adb_A Succinylornithine trans 100.0 6.1E-42 2.1E-46 385.7 39.3 379 376-854 22-401 (406)
36 1sff_A 4-aminobutyrate aminotr 100.0 2.6E-41 9.1E-46 383.3 41.9 414 353-853 7-424 (426)
37 2ord_A Acoat, acetylornithine 100.0 8.9E-39 3.1E-43 359.8 36.0 374 375-852 22-396 (397)
38 1vef_A Acetylornithine/acetyl- 100.0 6.4E-36 2.2E-40 335.9 36.7 365 376-850 28-394 (395)
39 2eh6_A Acoat, acetylornithine 100.0 2.6E-34 8.9E-39 320.0 38.1 364 375-849 10-374 (375)
40 3fgn_A Dethiobiotin synthetase 100.0 4.4E-33 1.5E-37 295.3 17.1 192 36-316 25-227 (251)
41 3qxc_A Dethiobiotin synthetase 100.0 1.4E-32 4.9E-37 289.9 17.4 194 36-309 20-226 (242)
42 3of5_A Dethiobiotin synthetase 100.0 2.5E-32 8.6E-37 286.2 17.6 209 36-327 3-217 (228)
43 3l8a_A METC, putative aminotra 100.0 3.8E-30 1.3E-34 292.3 26.8 355 382-851 46-420 (421)
44 2w8t_A SPT, serine palmitoyltr 100.0 4E-29 1.4E-33 284.8 34.1 343 384-854 54-416 (427)
45 3tqx_A 2-amino-3-ketobutyrate 100.0 3.5E-27 1.2E-31 264.0 32.1 346 384-853 33-396 (399)
46 3kki_A CAI-1 autoinducer synth 100.0 4.7E-28 1.6E-32 273.6 24.7 337 384-852 48-403 (409)
47 1fc4_A 2-amino-3-ketobutyrate 100.0 1.4E-26 4.7E-31 260.2 29.4 345 384-853 34-397 (401)
48 3a2b_A Serine palmitoyltransfe 99.9 1.6E-24 5.4E-29 243.4 31.9 342 384-853 33-392 (398)
49 1bs0_A Protein (8-amino-7-oxon 99.9 1.5E-24 5.1E-29 242.2 31.4 339 384-849 29-383 (384)
50 3dzz_A Putative pyridoxal 5'-p 99.9 3.8E-25 1.3E-29 246.8 26.0 355 383-853 15-389 (391)
51 3fdb_A Beta C-S lyase, putativ 99.9 1.9E-25 6.4E-30 248.3 22.7 348 383-852 11-375 (377)
52 3kax_A Aminotransferase, class 99.9 2.5E-24 8.6E-29 239.5 27.8 354 383-850 11-382 (383)
53 1yiz_A Kynurenine aminotransfe 99.9 2.2E-23 7.4E-28 236.7 31.6 356 400-851 38-427 (429)
54 1c7n_A Cystalysin; transferase 99.9 7.9E-24 2.7E-28 237.6 26.4 360 382-854 11-394 (399)
55 4dq6_A Putative pyridoxal phos 99.9 3.5E-24 1.2E-28 239.0 22.7 354 383-850 15-390 (391)
56 2zc0_A Alanine glyoxylate tran 99.9 2.4E-23 8.2E-28 234.3 28.6 347 400-853 35-404 (407)
57 1d2f_A MALY protein; aminotran 99.9 4E-23 1.4E-27 231.3 29.7 358 382-853 10-389 (390)
58 3ftb_A Histidinol-phosphate am 99.9 1.2E-22 4.1E-27 224.4 30.3 332 384-851 14-359 (361)
59 3nra_A Aspartate aminotransfer 99.9 2.6E-23 8.9E-28 233.5 21.4 346 400-853 40-405 (407)
60 2zyj_A Alpha-aminodipate amino 99.9 6.9E-23 2.4E-27 230.1 24.5 341 400-854 33-394 (397)
61 3euc_A Histidinol-phosphate am 99.9 3.7E-22 1.3E-26 221.3 30.0 326 400-850 31-365 (367)
62 1vp4_A Aminotransferase, putat 99.9 2E-22 6.7E-27 229.0 27.5 355 400-854 44-419 (425)
63 1lc5_A COBD, L-threonine-O-3-p 99.9 9.3E-23 3.2E-27 226.4 23.6 331 391-854 20-361 (364)
64 3b1d_A Betac-S lyase; HET: PLP 99.8 2.3E-25 7.9E-30 250.1 0.0 355 382-851 16-391 (392)
65 2dou_A Probable N-succinyldiam 99.9 3.6E-22 1.2E-26 222.4 25.1 330 400-850 26-375 (376)
66 3ly1_A Putative histidinol-pho 99.9 7.8E-22 2.7E-26 217.5 27.5 336 385-852 6-351 (354)
67 2bwn_A 5-aminolevulinate synth 99.9 1E-21 3.6E-26 220.6 29.0 338 393-853 44-400 (401)
68 3aow_A Putative uncharacterize 99.9 6E-22 2E-26 227.4 27.4 349 400-853 77-445 (448)
69 3piu_A 1-aminocyclopropane-1-c 99.9 2.7E-22 9.1E-27 228.5 22.8 361 389-854 30-433 (435)
70 3ezs_A Aminotransferase ASPB; 99.9 3.9E-22 1.3E-26 221.7 23.5 330 400-852 24-374 (376)
71 3ffh_A Histidinol-phosphate am 99.9 2E-21 6.8E-26 215.1 28.6 320 400-849 33-362 (363)
72 1j32_A Aspartate aminotransfer 99.9 3.4E-21 1.2E-25 215.3 30.5 344 393-853 28-387 (388)
73 2x5d_A Probable aminotransfera 99.9 2.6E-21 8.9E-26 218.6 29.7 345 392-855 34-400 (412)
74 1v2d_A Glutamine aminotransfer 99.9 1.1E-21 3.7E-26 219.0 26.0 332 400-857 26-375 (381)
75 3cq5_A Histidinol-phosphate am 99.9 4.3E-21 1.5E-25 213.5 30.7 323 402-851 33-366 (369)
76 1gd9_A Aspartate aminotransfer 99.9 2.4E-21 8.1E-26 216.6 28.6 343 400-853 27-386 (389)
77 3hdo_A Histidinol-phosphate am 99.9 3.4E-21 1.2E-25 213.4 28.9 321 400-851 27-353 (360)
78 3b46_A Aminotransferase BNA3; 99.9 1.1E-21 3.8E-26 224.7 25.8 355 400-848 58-442 (447)
79 2gb3_A Aspartate aminotransfer 99.9 2.3E-21 7.8E-26 219.0 27.7 343 400-863 44-409 (409)
80 3jtx_A Aminotransferase; NP_28 99.9 1.4E-21 4.8E-26 218.8 24.9 347 387-850 22-395 (396)
81 2z61_A Probable aspartate amin 99.9 1.6E-21 5.3E-26 216.8 25.0 324 400-851 30-369 (370)
82 3h14_A Aminotransferase, class 99.9 2.4E-21 8.3E-26 216.9 26.5 342 392-854 28-383 (391)
83 3dyd_A Tyrosine aminotransfera 99.9 3.8E-21 1.3E-25 218.9 27.8 347 391-852 50-423 (427)
84 1xi9_A Putative transaminase; 99.9 1.1E-20 3.6E-25 213.1 28.8 342 400-853 39-403 (406)
85 2o0r_A RV0858C (N-succinyldiam 99.9 6.4E-21 2.2E-25 215.3 26.4 343 400-853 26-396 (411)
86 1u08_A Hypothetical aminotrans 99.9 1.8E-20 6.3E-25 209.3 29.3 335 400-848 31-385 (386)
87 1kmj_A Selenocysteine lyase; p 99.9 6.5E-20 2.2E-24 205.0 33.2 334 414-853 33-405 (406)
88 3fvs_A Kynurenine--oxoglutarat 99.9 1.7E-20 5.8E-25 212.0 28.5 359 400-852 29-421 (422)
89 2o1b_A Aminotransferase, class 99.9 3.9E-21 1.3E-25 217.0 22.7 336 400-852 48-402 (404)
90 3op7_A Aminotransferase class 99.9 1.4E-20 4.7E-25 209.4 26.7 299 445-853 65-371 (375)
91 3ke3_A Putative serine-pyruvat 99.9 9.2E-21 3.1E-25 212.3 24.3 345 388-854 5-377 (379)
92 1elu_A L-cysteine/L-cystine C- 99.9 9.7E-21 3.3E-25 210.8 22.5 328 413-848 25-387 (390)
93 1o4s_A Aspartate aminotransfer 99.9 5.5E-20 1.9E-24 206.3 28.6 333 400-851 42-387 (389)
94 1iay_A ACC synthase 2, 1-amino 99.9 3.4E-20 1.1E-24 210.5 26.9 215 619-852 188-426 (428)
95 3g0t_A Putative aminotransfera 99.9 4.5E-20 1.5E-24 209.5 26.9 348 388-851 37-435 (437)
96 3qgu_A LL-diaminopimelate amin 99.9 6.4E-20 2.2E-24 209.5 26.4 341 400-852 70-439 (449)
97 1bw0_A TAT, protein (tyrosine 99.8 1.8E-19 6.3E-24 203.3 29.6 347 400-853 34-413 (416)
98 1ax4_A Tryptophanase; tryptoph 99.8 2.3E-20 7.9E-25 214.1 22.4 358 400-854 44-442 (467)
99 3ele_A Amino transferase; RER0 99.8 1.1E-19 3.9E-24 203.6 26.6 334 400-853 36-396 (398)
100 3e2y_A Kynurenine-oxoglutarate 99.8 2E-19 6.9E-24 202.2 28.4 354 400-848 24-408 (410)
101 1t3i_A Probable cysteine desul 99.8 4.6E-19 1.6E-23 199.2 31.2 343 400-855 28-415 (420)
102 2x5f_A Aspartate_tyrosine_phen 99.8 9.5E-21 3.3E-25 215.1 17.3 341 400-853 48-429 (430)
103 3get_A Histidinol-phosphate am 99.8 3.3E-19 1.1E-23 197.4 28.7 322 400-850 31-364 (365)
104 1qz9_A Kynureninase; kynurenin 99.8 4.9E-19 1.7E-23 199.4 30.1 341 400-853 30-402 (416)
105 1ajs_A Aspartate aminotransfer 99.8 3.8E-20 1.3E-24 208.6 20.7 352 400-853 31-411 (412)
106 3fkd_A L-threonine-O-3-phospha 99.8 2.9E-19 9.9E-24 196.9 27.2 326 384-852 4-341 (350)
107 3f9t_A TDC, L-tyrosine decarbo 99.8 1.8E-19 6.1E-24 200.3 25.6 333 417-851 42-396 (397)
108 2q7w_A Aspartate aminotransfer 99.8 5.4E-20 1.8E-24 205.9 20.8 333 400-849 27-395 (396)
109 2dr1_A PH1308 protein, 386AA l 99.8 2.5E-19 8.6E-24 199.1 26.0 328 417-854 31-380 (386)
110 1fg7_A Histidinol phosphate am 99.8 2.3E-19 7.9E-24 199.0 24.2 315 400-848 30-353 (356)
111 3lvm_A Cysteine desulfurase; s 99.8 4.9E-19 1.7E-23 199.9 25.3 339 400-855 24-401 (423)
112 3kgw_A Alanine-glyoxylate amin 99.8 1.2E-19 4E-24 202.0 19.5 327 417-854 34-389 (393)
113 2ay1_A Aroat, aromatic amino a 99.8 1.7E-19 5.8E-24 201.9 20.6 341 400-849 27-392 (394)
114 2oqx_A Tryptophanase; lyase, p 99.8 9.2E-20 3.1E-24 209.1 18.5 357 400-854 42-443 (467)
115 3zrp_A Serine-pyruvate aminotr 99.8 3.9E-19 1.4E-23 197.1 23.0 324 417-854 13-364 (384)
116 1byi_A Dethiobiotin synthase; 99.8 3.2E-19 1.1E-23 184.8 20.8 213 38-326 2-220 (224)
117 3f0h_A Aminotransferase; RER07 99.8 5.3E-19 1.8E-23 196.2 23.8 322 417-851 30-372 (376)
118 2dkj_A Serine hydroxymethyltra 99.8 5.3E-19 1.8E-23 198.4 22.0 334 400-852 24-387 (407)
119 1svv_A Threonine aldolase; str 99.8 2.1E-18 7.2E-23 189.4 26.1 327 412-853 22-358 (359)
120 2r2n_A Kynurenine/alpha-aminoa 99.8 5.6E-18 1.9E-22 192.4 30.3 214 619-852 190-423 (425)
121 1vjo_A Alanine--glyoxylate ami 99.8 6E-19 2E-23 197.2 21.8 331 400-850 35-392 (393)
122 1m32_A 2-aminoethylphosphonate 99.8 9.6E-19 3.3E-23 192.4 22.2 340 400-852 4-364 (366)
123 3ez1_A Aminotransferase MOCR f 99.8 3.6E-19 1.2E-23 201.5 18.7 315 445-854 72-416 (423)
124 3nnk_A Ureidoglycine-glyoxylat 99.8 7.4E-19 2.5E-23 197.2 20.7 326 417-853 24-390 (411)
125 2e7j_A SEP-tRNA:Cys-tRNA synth 99.8 3E-19 1E-23 197.6 16.5 332 400-853 10-370 (371)
126 3asa_A LL-diaminopimelate amin 99.8 4.5E-18 1.5E-22 191.4 26.2 331 400-853 34-393 (400)
127 1cs1_A CGS, protein (cystathio 99.8 8.6E-18 2.9E-22 188.3 28.1 283 439-849 48-383 (386)
128 3ei9_A LL-diaminopimelate amin 99.8 5E-18 1.7E-22 192.8 26.2 340 400-849 57-424 (432)
129 1eg5_A Aminotransferase; PLP-d 99.8 6.8E-18 2.3E-22 187.1 26.6 335 400-855 3-378 (384)
130 3g7q_A Valine-pyruvate aminotr 99.8 2.7E-18 9.2E-23 193.4 22.7 214 619-854 180-414 (417)
131 3mad_A Sphingosine-1-phosphate 99.8 2.2E-17 7.6E-22 192.5 31.1 333 417-855 108-471 (514)
132 2rfv_A Methionine gamma-lyase; 99.8 9.8E-18 3.4E-22 188.7 25.3 315 418-849 39-396 (398)
133 1v72_A Aldolase; PLP-dependent 99.8 1.4E-17 4.7E-22 182.9 25.3 328 400-853 8-353 (356)
134 3t18_A Aminotransferase class 99.8 8.6E-18 2.9E-22 189.6 23.8 347 400-854 38-411 (413)
135 2ez2_A Beta-tyrosinase, tyrosi 99.8 2.6E-17 8.9E-22 188.2 27.7 348 400-854 43-432 (456)
136 3rq1_A Aminotransferase class 99.8 6.9E-18 2.4E-22 190.7 22.5 333 417-854 57-416 (418)
137 2z9v_A Aspartate aminotransfer 99.8 1.6E-17 5.3E-22 185.4 24.4 337 400-854 10-372 (392)
138 1uu1_A Histidinol-phosphate am 99.8 1.2E-17 4.1E-22 183.2 22.3 310 400-849 20-334 (335)
139 3cai_A Possible aminotransfera 99.8 1.5E-16 5.2E-21 178.4 31.3 332 400-848 28-404 (406)
140 3e9k_A Kynureninase; kynurenin 99.8 4.5E-18 1.6E-22 195.5 18.8 353 400-853 69-461 (465)
141 3d6k_A Putative aminotransfera 99.8 8.8E-18 3E-22 190.6 20.3 227 602-853 168-418 (422)
142 3ppl_A Aspartate aminotransfer 99.8 5E-18 1.7E-22 192.7 18.2 219 618-854 179-421 (427)
143 1gc0_A Methionine gamma-lyase; 99.8 6.9E-17 2.4E-21 182.1 27.4 285 439-849 61-397 (398)
144 4f4e_A Aromatic-amino-acid ami 99.8 3.1E-17 1.1E-21 185.9 23.7 348 400-850 50-419 (420)
145 2yrr_A Aminotransferase, class 99.8 7.1E-18 2.4E-22 184.5 17.4 322 417-851 11-351 (353)
146 3if2_A Aminotransferase; YP_26 99.8 6.1E-17 2.1E-21 184.4 25.3 214 619-854 206-441 (444)
147 2cb1_A O-acetyl homoserine sul 99.8 1.9E-16 6.5E-21 179.4 29.0 304 412-848 29-411 (412)
148 3qhx_A Cystathionine gamma-syn 99.8 4.4E-17 1.5E-21 183.7 23.4 256 439-819 62-339 (392)
149 3fsl_A Aromatic-amino-acid ami 99.7 5.5E-17 1.9E-21 181.5 23.3 344 400-849 27-396 (397)
150 2huf_A Alanine glyoxylate amin 99.7 3.8E-17 1.3E-21 182.4 21.5 326 417-854 30-384 (393)
151 4hvk_A Probable cysteine desul 99.7 5.5E-16 1.9E-20 171.1 30.6 339 400-856 2-376 (382)
152 2oga_A Transaminase; PLP-depen 99.7 2.6E-17 8.9E-22 185.2 20.2 321 400-853 31-396 (399)
153 1iug_A Putative aspartate amin 99.7 4.9E-17 1.7E-21 178.2 21.5 319 417-853 12-348 (352)
154 2vi8_A Serine hydroxymethyltra 99.7 6E-17 2.1E-21 181.4 22.0 216 602-853 153-387 (405)
155 4eb5_A Probable cysteine desul 99.7 9E-16 3.1E-20 170.1 31.1 339 400-856 2-376 (382)
156 3isl_A Purine catabolism prote 99.7 6.2E-17 2.1E-21 181.8 20.4 328 418-853 19-390 (416)
157 1wyu_B Glycine dehydrogenase s 99.7 3.2E-16 1.1E-20 181.1 26.6 330 417-852 78-440 (474)
158 3ecd_A Serine hydroxymethyltra 99.7 2E-16 7E-21 178.1 24.2 320 418-853 45-397 (425)
159 3gbx_A Serine hydroxymethyltra 99.7 1.1E-16 3.7E-21 180.1 21.8 212 602-852 159-395 (420)
160 3nmy_A Xometc, cystathionine g 99.7 4E-17 1.4E-21 184.8 18.3 238 439-793 63-322 (400)
161 2ch1_A 3-hydroxykynurenine tra 99.7 2E-16 6.9E-21 176.6 23.4 326 417-854 29-384 (396)
162 1b5p_A Protein (aspartate amin 99.7 1.6E-15 5.5E-20 169.6 29.9 340 400-851 32-383 (385)
163 3uwc_A Nucleotide-sugar aminot 99.7 3.9E-17 1.3E-21 181.2 15.9 305 421-852 21-370 (374)
164 3p1t_A Putative histidinol-pho 99.7 1.8E-15 6.1E-20 165.1 28.1 312 400-850 17-334 (337)
165 3h7f_A Serine hydroxymethyltra 99.7 1.3E-16 4.6E-21 182.6 20.0 322 417-853 57-414 (447)
166 1yaa_A Aspartate aminotransfer 99.7 3.5E-16 1.2E-20 176.3 22.5 343 400-852 30-410 (412)
167 3mc6_A Sphingosine-1-phosphate 99.7 7.8E-16 2.7E-20 178.3 26.0 333 417-854 76-438 (497)
168 1pff_A Methionine gamma-lyase; 99.7 1.8E-16 6.2E-21 173.1 18.6 282 447-849 2-330 (331)
169 3lws_A Aromatic amino acid bet 99.7 6E-16 2.1E-20 170.6 22.6 336 400-850 4-356 (357)
170 3acz_A Methionine gamma-lyase; 99.7 1.2E-15 4.2E-20 171.4 25.3 262 439-821 55-330 (389)
171 2ctz_A O-acetyl-L-homoserine s 99.7 2.3E-16 7.9E-21 179.5 18.7 289 440-850 55-420 (421)
172 3a9z_A Selenocysteine lyase; P 99.7 2.3E-15 7.8E-20 170.6 26.2 363 400-854 20-429 (432)
173 3vax_A Putative uncharacterize 99.7 3E-16 1E-20 175.4 18.0 342 389-852 15-399 (400)
174 3n0l_A Serine hydroxymethyltra 99.7 2.1E-15 7.2E-20 169.5 24.6 322 417-853 37-389 (417)
175 3dr4_A Putative perosamine syn 99.7 1.5E-16 5.2E-21 178.0 15.2 311 419-850 36-390 (391)
176 1jg8_A L-ALLO-threonine aldola 99.7 8.1E-15 2.8E-19 160.8 28.6 331 400-852 4-345 (347)
177 1mdo_A ARNB aminotransferase; 99.7 2.9E-15 9.9E-20 167.2 24.5 311 418-853 19-386 (393)
178 3pj0_A LMO0305 protein; struct 99.7 7.5E-16 2.6E-20 169.8 19.3 312 418-849 28-358 (359)
179 2fnu_A Aminotransferase; prote 99.7 1.8E-15 6E-20 167.5 22.2 314 417-853 11-372 (375)
180 3ndn_A O-succinylhomoserine su 99.7 4.5E-16 1.5E-20 176.9 17.7 262 439-819 77-358 (414)
181 3frk_A QDTB; aminotransferase, 99.7 5.4E-16 1.9E-20 172.4 17.8 315 413-852 8-367 (373)
182 2qma_A Diaminobutyrate-pyruvat 99.7 3.1E-14 1.1E-18 165.2 33.4 217 620-853 259-496 (497)
183 3f6t_A Aspartate aminotransfer 99.7 1.8E-15 6.3E-20 177.4 22.9 362 408-858 108-530 (533)
184 2po3_A 4-dehydrase; external a 99.7 2E-14 6.8E-19 163.0 29.9 320 417-861 30-394 (424)
185 3nyt_A Aminotransferase WBPE; 99.7 8.8E-16 3E-20 170.6 17.9 311 417-848 10-359 (367)
186 2obn_A Hypothetical protein; s 99.6 2.7E-16 9.4E-21 172.5 11.2 85 221-309 226-333 (349)
187 1b9h_A AHBA synthase, protein 99.6 1.2E-14 4.1E-19 162.3 24.7 313 418-852 16-387 (388)
188 1o69_A Aminotransferase; struc 99.6 6.3E-15 2.2E-19 165.5 21.8 322 418-851 11-385 (394)
189 2bkw_A Alanine-glyoxylate amin 99.6 6.9E-15 2.3E-19 163.1 19.1 217 602-852 127-383 (385)
190 2aeu_A Hypothetical protein MJ 99.6 9.8E-15 3.3E-19 163.3 19.0 213 619-853 140-371 (374)
191 1e5e_A MGL, methionine gamma-l 99.6 1.4E-13 4.9E-18 155.5 27.4 286 441-853 60-395 (404)
192 3ffr_A Phosphoserine aminotran 99.6 4.5E-14 1.5E-18 155.0 22.5 316 417-850 15-361 (362)
193 3b8x_A WBDK, pyridoxamine 5-ph 99.6 2.6E-13 8.7E-18 151.8 27.6 325 407-846 2-389 (390)
194 1qgn_A Protein (cystathionine 99.6 5.7E-14 1.9E-18 161.1 22.5 285 440-852 111-444 (445)
195 3meb_A Aspartate aminotransfer 99.6 2.8E-14 9.5E-19 163.4 19.9 344 400-852 50-443 (448)
196 4eu1_A Mitochondrial aspartate 99.6 3.4E-14 1.2E-18 160.0 18.7 335 400-850 42-408 (409)
197 1ibj_A CBL, cystathionine beta 99.6 1.4E-14 4.7E-19 167.1 15.8 288 441-852 131-461 (464)
198 2c81_A Glutamine-2-deoxy-scyll 99.6 3E-13 1E-17 152.8 25.4 317 418-852 15-413 (418)
199 1n8p_A Cystathionine gamma-lya 99.6 2.2E-13 7.4E-18 153.6 23.6 283 440-849 52-391 (393)
200 3cog_A Cystathionine gamma-lya 99.6 8E-14 2.7E-18 157.7 19.6 289 440-849 64-398 (403)
201 3tcm_A Alanine aminotransferas 99.5 2.7E-13 9.2E-18 157.6 23.5 345 418-857 108-498 (500)
202 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.5 4.7E-13 1.6E-17 152.4 24.0 316 418-851 42-434 (437)
203 3ht4_A Aluminum resistance pro 99.5 1.7E-13 5.7E-18 156.6 18.2 299 417-816 36-345 (431)
204 2jis_A Cysteine sulfinic acid 99.5 1.6E-11 5.3E-16 143.2 31.4 325 445-852 150-514 (515)
205 2x3l_A ORN/Lys/Arg decarboxyla 99.5 1.7E-13 5.8E-18 157.1 12.8 201 620-853 147-353 (446)
206 2okj_A Glutamate decarboxylase 99.5 3.6E-11 1.2E-15 139.7 31.9 218 619-852 245-501 (504)
207 7aat_A Aspartate aminotransfer 99.4 9.1E-13 3.1E-17 147.6 17.1 215 603-850 164-400 (401)
208 3ihj_A Alanine aminotransferas 99.4 1.3E-11 4.4E-16 143.5 25.9 346 418-855 103-495 (498)
209 3ri6_A O-acetylhomoserine sulf 99.4 1.5E-12 5.2E-17 148.6 16.7 253 439-816 78-371 (430)
210 2zy4_A L-aspartate beta-decarb 99.4 1.1E-11 3.9E-16 145.6 21.6 361 401-856 106-525 (546)
211 2dgk_A GAD-beta, GADB, glutama 99.3 1.7E-10 5.7E-15 132.0 27.1 342 417-855 54-436 (452)
212 2fyf_A PSAT, phosphoserine ami 99.3 3.2E-11 1.1E-15 135.2 20.4 205 620-852 166-397 (398)
213 1w23_A Phosphoserine aminotran 99.3 7.1E-12 2.4E-16 137.8 14.0 202 619-852 141-359 (360)
214 2fq6_A Cystathionine beta-lyas 99.3 2.6E-11 8.8E-16 137.8 16.9 287 439-848 78-413 (415)
215 3hbx_A GAD 1, glutamate decarb 99.3 5.7E-10 1.9E-14 129.7 28.6 217 619-855 203-446 (502)
216 3vp6_A Glutamate decarboxylase 99.3 1.8E-09 6.3E-14 125.7 31.3 239 602-853 233-505 (511)
217 2z67_A O-phosphoseryl-tRNA(SEC 99.2 6.2E-10 2.1E-14 127.7 25.2 203 619-850 231-455 (456)
218 2a7v_A Serine hydroxymethyltra 99.2 3.3E-10 1.1E-14 131.1 22.9 183 643-853 220-441 (490)
219 1rv3_A Serine hydroxymethyltra 99.2 1.4E-10 4.9E-15 134.1 19.8 213 602-852 183-430 (483)
220 3ju7_A Putative PLP-dependent 99.2 2.3E-10 7.9E-15 128.1 20.6 314 417-853 14-375 (377)
221 3jzl_A Putative cystathionine 99.2 5.4E-10 1.8E-14 126.7 21.4 290 417-816 30-339 (409)
222 2g0t_A Conserved hypothetical 99.2 3.1E-11 1.1E-15 132.8 10.4 151 37-309 169-333 (350)
223 4e1o_A HDC, histidine decarbox 99.2 8.5E-09 2.9E-13 119.1 30.7 210 622-853 245-478 (481)
224 1js3_A DDC;, DOPA decarboxylas 99.2 8.5E-09 2.9E-13 118.9 28.8 213 620-854 237-475 (486)
225 2c0r_A PSAT, phosphoserine ami 99.1 5.1E-10 1.7E-14 123.4 16.8 202 619-852 142-360 (362)
226 3hvy_A Cystathionine beta-lyas 99.1 4.6E-09 1.6E-13 119.6 23.3 290 417-815 45-355 (427)
227 3k40_A Aromatic-L-amino-acid d 99.1 1.5E-08 5E-13 117.0 27.0 216 620-854 236-472 (475)
228 1c4k_A Protein (ornithine deca 99.1 4.4E-09 1.5E-13 127.2 23.3 212 621-854 284-567 (730)
229 3k7y_A Aspartate aminotransfer 99.1 2.4E-09 8.2E-14 121.1 18.5 218 602-852 162-404 (405)
230 3i16_A Aluminum resistance pro 99.0 1.1E-08 3.8E-13 116.4 22.7 173 602-816 165-356 (427)
231 4h51_A Aspartate aminotransfer 99.0 1.9E-09 6.5E-14 122.5 13.6 209 620-855 191-419 (420)
232 3n75_A LDC, lysine decarboxyla 99.0 7E-09 2.4E-13 124.7 17.4 318 441-852 193-559 (715)
233 2vyc_A Biodegradative arginine 98.9 3.2E-08 1.1E-12 120.4 23.0 218 621-854 315-606 (755)
234 3bwn_A AT1G70560, L-tryptophan 98.9 6.2E-09 2.1E-13 116.8 15.5 192 621-852 160-386 (391)
235 1wyu_A Glycine dehydrogenase ( 98.9 2.2E-08 7.6E-13 113.9 19.3 204 619-850 196-437 (438)
236 1g3q_A MIND ATPase, cell divis 98.7 1.5E-07 5.1E-12 97.6 14.7 100 194-315 98-202 (237)
237 2ph1_A Nucleotide-binding prot 98.6 9.9E-07 3.4E-11 93.4 18.6 88 220-315 128-231 (262)
238 3hl2_A O-phosphoseryl-tRNA(SEC 98.6 3.1E-06 1.1E-10 95.7 22.7 229 602-855 203-463 (501)
239 3la6_A Tyrosine-protein kinase 98.6 4.1E-07 1.4E-11 98.0 14.8 78 195-291 189-266 (286)
240 1hyq_A MIND, cell division inh 98.6 1.5E-07 5.2E-12 99.3 10.8 101 194-316 97-202 (263)
241 4dzz_A Plasmid partitioning pr 98.6 4.1E-07 1.4E-11 91.9 13.4 99 195-315 63-171 (206)
242 3bc8_A O-phosphoseryl-tRNA(SEC 98.6 2.2E-05 7.4E-10 89.4 28.4 230 602-854 185-444 (450)
243 2hox_A ALLIIN lyase 1; cystein 98.6 3.9E-07 1.3E-11 103.5 14.2 190 621-851 199-423 (427)
244 3ea0_A ATPase, para family; al 98.5 1.9E-06 6.6E-11 89.4 16.5 100 193-314 104-209 (245)
245 3cio_A ETK, tyrosine-protein k 98.5 6E-07 2.1E-11 97.3 12.9 77 195-290 201-277 (299)
246 3e77_A Phosphoserine aminotran 98.5 2.3E-06 7.8E-11 95.7 17.2 195 632-852 164-374 (377)
247 3bfv_A CAPA1, CAPB2, membrane 98.5 1E-06 3.5E-11 94.1 13.7 78 195-291 179-256 (271)
248 3m5u_A Phosphoserine aminotran 98.5 1.2E-05 4.1E-10 89.4 22.8 190 632-852 152-359 (361)
249 3qm2_A Phosphoserine aminotran 98.4 1.1E-06 3.6E-11 98.8 11.1 179 653-852 191-384 (386)
250 3q9l_A Septum site-determining 98.3 1.3E-06 4.3E-11 91.7 10.6 102 192-315 97-216 (260)
251 3k9g_A PF-32 protein; ssgcid, 98.2 4.5E-06 1.5E-10 88.3 11.9 90 221-317 145-237 (267)
252 3end_A Light-independent proto 98.2 4.4E-06 1.5E-10 90.4 11.9 88 220-315 156-249 (307)
253 1s1m_A CTP synthase; CTP synth 98.2 1.9E-06 6.5E-11 99.9 8.4 38 37-79 3-41 (545)
254 2woo_A ATPase GET3; tail-ancho 98.1 2.6E-05 8.8E-10 85.6 15.7 63 253-316 224-303 (329)
255 3ug7_A Arsenical pump-driving 98.1 5E-06 1.7E-10 92.0 9.9 67 251-317 238-319 (349)
256 3zq6_A Putative arsenical pump 98.1 3.8E-06 1.3E-10 91.9 7.6 41 251-291 223-263 (324)
257 3cwq_A Para family chromosome 98.0 3.6E-05 1.2E-09 78.6 13.3 88 221-315 68-162 (209)
258 1wcv_1 SOJ, segregation protei 98.0 1.6E-05 5.4E-10 83.8 10.3 38 36-78 5-42 (257)
259 2afh_E Nitrogenase iron protei 98.0 4.6E-05 1.6E-09 81.6 12.9 93 220-316 118-217 (289)
260 3kjh_A CO dehydrogenase/acetyl 97.9 6.7E-06 2.3E-10 85.3 5.4 100 196-316 119-221 (254)
261 1cp2_A CP2, nitrogenase iron p 97.9 3.5E-05 1.2E-09 81.3 10.6 92 220-315 115-213 (269)
262 1vco_A CTP synthetase; tetrame 97.9 2.7E-05 9.3E-10 90.3 10.2 38 37-79 12-50 (550)
263 1ihu_A Arsenical pump-driving 97.9 7E-06 2.4E-10 97.2 5.1 71 220-290 440-530 (589)
264 3dm5_A SRP54, signal recogniti 97.9 0.00018 6.3E-09 81.6 16.3 36 37-78 100-135 (443)
265 1ihu_A Arsenical pump-driving 97.9 5.3E-05 1.8E-09 89.6 12.4 39 253-291 201-239 (589)
266 2xj4_A MIPZ; replication, cell 97.8 2E-05 6.7E-10 84.5 7.5 36 38-78 5-40 (286)
267 2oze_A ORF delta'; para, walke 97.7 0.00011 3.8E-09 78.8 10.7 66 221-293 155-226 (298)
268 2xxa_A Signal recognition part 97.6 0.00031 1.1E-08 79.8 13.5 36 37-78 100-136 (433)
269 2ffh_A Protein (FFH); SRP54, s 97.4 0.0018 6.2E-08 73.2 15.2 42 30-78 92-133 (425)
270 2woj_A ATPase GET3; tail-ancho 97.3 0.0019 6.4E-08 71.4 14.6 38 253-290 238-275 (354)
271 3igf_A ALL4481 protein; two-do 97.3 0.0012 4.2E-08 73.4 12.6 63 251-316 215-277 (374)
272 3iqw_A Tail-anchored protein t 97.3 0.0014 4.7E-08 71.9 12.5 64 252-316 224-306 (334)
273 3fkq_A NTRC-like two-domain pr 97.3 0.00059 2E-08 75.9 9.6 38 36-78 142-179 (373)
274 1xjc_A MOBB protein homolog; s 96.8 0.0028 9.4E-08 62.6 8.3 37 36-78 3-39 (169)
275 3io3_A DEHA2D07832P; chaperone 96.6 0.014 4.8E-07 64.2 13.4 64 252-316 233-315 (348)
276 3kl4_A SRP54, signal recogniti 96.6 0.0089 3E-07 67.7 11.6 36 37-78 97-132 (433)
277 3pg5_A Uncharacterized protein 96.4 0.019 6.6E-07 63.4 12.7 37 37-78 1-37 (361)
278 3fwy_A Light-independent proto 96.4 0.038 1.3E-06 59.9 14.7 36 37-78 48-83 (314)
279 3ou5_A Serine hydroxymethyltra 96.3 0.02 6.9E-07 64.7 12.0 183 643-851 220-439 (490)
280 2j37_W Signal recognition part 96.1 0.019 6.4E-07 66.3 11.1 36 37-78 101-136 (504)
281 2px0_A Flagellar biosynthesis 95.9 0.13 4.4E-06 55.2 15.9 37 37-78 105-141 (296)
282 1zu4_A FTSY; GTPase, signal re 95.7 0.12 4E-06 56.2 14.6 36 37-78 105-140 (320)
283 1j8m_F SRP54, signal recogniti 95.7 0.14 4.6E-06 55.1 14.8 42 31-78 92-133 (297)
284 2v3c_C SRP54, signal recogniti 95.5 0.051 1.7E-06 61.5 10.9 35 38-78 100-134 (432)
285 3ez9_A Para; DNA binding, wing 95.3 0.012 4.2E-07 65.9 5.0 43 36-78 110-153 (403)
286 1ls1_A Signal recognition part 95.2 0.23 7.7E-06 53.2 14.3 42 30-78 92-133 (295)
287 3vaa_A Shikimate kinase, SK; s 90.9 0.15 5E-06 50.9 3.9 27 36-63 24-50 (199)
288 2yhs_A FTSY, cell division pro 90.9 2.1 7.1E-05 49.0 13.8 33 39-77 295-327 (503)
289 1np6_A Molybdopterin-guanine d 90.9 0.19 6.3E-06 49.6 4.6 36 37-78 6-41 (174)
290 2f1r_A Molybdopterin-guanine d 90.8 0.13 4.3E-06 50.6 3.3 37 37-79 2-38 (171)
291 1nks_A Adenylate kinase; therm 89.6 0.29 9.8E-06 47.7 4.7 35 37-77 1-35 (194)
292 3e70_C DPA, signal recognition 89.1 3.6 0.00012 44.5 13.5 34 38-77 130-163 (328)
293 3bh0_A DNAB-like replicative h 89.1 1.5 5.2E-05 47.0 10.4 35 39-78 69-103 (315)
294 3bgw_A DNAB-like replicative h 88.8 1.2 4.2E-05 50.3 9.8 35 39-78 198-232 (444)
295 3a8t_A Adenylate isopentenyltr 85.3 0.31 1.1E-05 53.1 2.2 24 39-63 42-65 (339)
296 2w58_A DNAI, primosome compone 84.7 0.86 2.9E-05 45.0 5.0 35 38-78 55-89 (202)
297 2j9r_A Thymidine kinase; TK1, 84.7 0.83 2.8E-05 46.5 4.9 36 40-81 31-66 (214)
298 3ez2_A Plasmid partition prote 84.7 0.7 2.4E-05 51.3 4.8 43 36-78 107-150 (398)
299 1xx6_A Thymidine kinase; NESG, 84.3 0.72 2.5E-05 46.0 4.2 36 39-80 10-45 (191)
300 3trf_A Shikimate kinase, SK; a 84.0 0.69 2.4E-05 44.9 3.8 27 36-63 4-30 (185)
301 2b8t_A Thymidine kinase; deoxy 83.6 0.78 2.7E-05 47.0 4.2 37 39-81 14-50 (223)
302 2orw_A Thymidine kinase; TMTK, 83.4 0.93 3.2E-05 44.7 4.6 36 39-80 5-40 (184)
303 3kb2_A SPBC2 prophage-derived 82.2 0.86 2.9E-05 43.4 3.7 26 37-63 1-26 (173)
304 2yvu_A Probable adenylyl-sulfa 81.4 1.1 3.8E-05 43.6 4.2 34 39-78 15-48 (186)
305 3hr8_A Protein RECA; alpha and 81.1 11 0.00036 41.3 12.3 34 39-78 63-96 (356)
306 2q6t_A DNAB replication FORK h 80.6 10 0.00035 42.5 12.4 36 39-78 201-236 (444)
307 1ukz_A Uridylate kinase; trans 80.5 1.1 3.9E-05 44.1 4.0 33 29-62 7-39 (203)
308 1q57_A DNA primase/helicase; d 80.4 10 0.00035 43.2 12.5 35 39-78 243-278 (503)
309 1zuh_A Shikimate kinase; alpha 80.3 1.1 3.7E-05 42.9 3.7 27 36-63 6-32 (168)
310 1kht_A Adenylate kinase; phosp 80.2 1.6 5.5E-05 42.2 4.9 32 38-75 4-35 (192)
311 1vma_A Cell division protein F 79.7 2.4 8.3E-05 45.4 6.5 35 38-78 105-139 (306)
312 2kjq_A DNAA-related protein; s 79.7 1.2 4.3E-05 42.2 3.8 36 37-78 36-71 (149)
313 1nn5_A Similar to deoxythymidy 79.1 1.8 6E-05 42.9 4.9 35 38-78 10-44 (215)
314 3p32_A Probable GTPase RV1496/ 79.1 2 7E-05 46.8 5.8 35 38-78 80-114 (355)
315 2z0h_A DTMP kinase, thymidylat 78.6 1.5 5.2E-05 42.7 4.2 33 40-78 3-35 (197)
316 3t61_A Gluconokinase; PSI-biol 78.4 1.5 5.1E-05 43.3 4.1 29 33-62 14-42 (202)
317 1via_A Shikimate kinase; struc 77.7 1.4 4.9E-05 42.4 3.6 26 37-63 4-29 (175)
318 1qhx_A CPT, protein (chloramph 77.4 1.4 4.8E-05 42.3 3.4 25 38-63 4-28 (178)
319 3pzx_A Formate--tetrahydrofola 76.5 1.7 6E-05 49.2 4.2 36 37-77 57-95 (557)
320 3iij_A Coilin-interacting nucl 76.5 2 6.8E-05 41.5 4.3 27 36-63 10-36 (180)
321 3bos_A Putative DNA replicatio 76.5 2 6.9E-05 42.9 4.5 35 38-78 53-87 (242)
322 1e6c_A Shikimate kinase; phosp 76.3 1.7 5.8E-05 41.4 3.7 26 37-63 2-27 (173)
323 2r8r_A Sensor protein; KDPD, P 75.7 2.4 8E-05 43.6 4.6 33 41-78 9-41 (228)
324 2wwf_A Thymidilate kinase, put 75.5 3.2 0.00011 40.9 5.6 35 38-78 11-45 (212)
325 1gtv_A TMK, thymidylate kinase 75.3 1 3.4E-05 44.7 1.8 34 39-78 2-35 (214)
326 1g5t_A COB(I)alamin adenosyltr 75.3 1.9 6.6E-05 43.2 3.8 37 37-78 27-63 (196)
327 3a4m_A L-seryl-tRNA(SEC) kinas 75.0 2 6.7E-05 44.7 4.0 33 37-75 4-36 (260)
328 4eun_A Thermoresistant glucoki 74.0 2.2 7.6E-05 42.1 3.9 24 38-62 30-53 (200)
329 2pbr_A DTMP kinase, thymidylat 73.9 2.1 7.2E-05 41.5 3.7 34 39-78 2-35 (195)
330 2c95_A Adenylate kinase 1; tra 72.8 2.1 7.2E-05 41.6 3.4 27 36-63 8-34 (196)
331 2qt1_A Nicotinamide riboside k 72.8 1.9 6.4E-05 42.8 3.1 37 22-62 9-45 (207)
332 2cdn_A Adenylate kinase; phosp 72.7 2.8 9.5E-05 41.3 4.3 24 39-63 22-45 (201)
333 2ze6_A Isopentenyl transferase 72.7 2 6.7E-05 44.6 3.3 26 37-63 1-26 (253)
334 1w4r_A Thymidine kinase; type 72.3 2.9 0.0001 41.8 4.3 38 37-80 20-57 (195)
335 1gvn_B Zeta; postsegregational 72.0 3 0.0001 44.1 4.6 22 40-62 36-57 (287)
336 1y63_A LMAJ004144AAA protein; 71.8 3 0.0001 40.6 4.3 25 37-62 10-34 (184)
337 3v9p_A DTMP kinase, thymidylat 71.5 1.9 6.6E-05 44.1 2.8 33 40-78 28-64 (227)
338 2plr_A DTMP kinase, probable t 71.4 3.5 0.00012 40.5 4.7 31 39-76 6-36 (213)
339 2vli_A Antibiotic resistance p 70.7 1.9 6.5E-05 41.5 2.5 26 37-63 5-30 (183)
340 2pez_A Bifunctional 3'-phospho 70.4 3.3 0.00011 39.9 4.1 33 39-77 7-39 (179)
341 2iyv_A Shikimate kinase, SK; t 70.3 2.9 9.8E-05 40.4 3.7 25 38-63 3-27 (184)
342 4edh_A DTMP kinase, thymidylat 70.1 3.9 0.00013 41.3 4.7 33 40-78 9-41 (213)
343 1cke_A CK, MSSA, protein (cyti 69.7 3.3 0.00011 41.4 4.1 24 38-62 6-29 (227)
344 3ec2_A DNA replication protein 69.4 2.8 9.6E-05 40.5 3.4 37 37-78 38-74 (180)
345 1ak2_A Adenylate kinase isoenz 69.2 3.3 0.00011 41.9 4.0 29 34-63 13-41 (233)
346 2qgz_A Helicase loader, putati 69.0 3.9 0.00013 43.7 4.7 37 37-78 152-188 (308)
347 1jbk_A CLPB protein; beta barr 68.7 4.2 0.00015 38.5 4.5 26 37-63 43-68 (195)
348 1a7j_A Phosphoribulokinase; tr 68.6 1.9 6.4E-05 45.8 2.1 35 37-77 5-39 (290)
349 3uie_A Adenylyl-sulfate kinase 68.5 3.2 0.00011 40.9 3.7 34 38-77 26-59 (200)
350 2qmh_A HPR kinase/phosphorylas 68.2 1.5 5.1E-05 44.2 1.1 24 37-61 34-57 (205)
351 1l8q_A Chromosomal replication 68.2 3.8 0.00013 43.6 4.4 35 38-78 38-72 (324)
352 2p65_A Hypothetical protein PF 67.6 4.3 0.00015 38.5 4.3 26 37-63 43-68 (187)
353 3crm_A TRNA delta(2)-isopenten 67.2 3 0.0001 45.1 3.4 24 39-63 7-30 (323)
354 3tau_A Guanylate kinase, GMP k 67.0 3.5 0.00012 41.0 3.6 27 36-63 7-33 (208)
355 3ney_A 55 kDa erythrocyte memb 66.7 4.1 0.00014 40.8 4.0 26 37-63 19-44 (197)
356 2if2_A Dephospho-COA kinase; a 66.6 3.8 0.00013 40.3 3.7 23 37-60 1-23 (204)
357 3lv8_A DTMP kinase, thymidylat 66.0 4.7 0.00016 41.4 4.4 34 39-78 29-63 (236)
358 1kag_A SKI, shikimate kinase I 65.7 4 0.00014 38.8 3.7 25 38-63 5-29 (173)
359 3te6_A Regulatory protein SIR3 65.7 3.6 0.00012 44.4 3.5 48 8-64 24-71 (318)
360 2rhm_A Putative kinase; P-loop 65.2 4.4 0.00015 39.2 3.8 24 39-63 7-30 (193)
361 3e2i_A Thymidine kinase; Zn-bi 64.8 5 0.00017 40.9 4.2 36 40-81 31-66 (219)
362 3io5_A Recombination and repai 64.5 32 0.0011 37.1 10.6 34 39-78 30-65 (333)
363 2bwj_A Adenylate kinase 5; pho 64.4 4.8 0.00016 39.1 4.0 25 38-63 13-37 (199)
364 2orv_A Thymidine kinase; TP4A 63.8 6.2 0.00021 40.5 4.7 37 39-81 21-57 (234)
365 1qf9_A UMP/CMP kinase, protein 63.8 5.3 0.00018 38.4 4.1 25 38-63 7-31 (194)
366 1zak_A Adenylate kinase; ATP:A 63.6 4.8 0.00017 40.2 3.9 26 37-63 5-30 (222)
367 2jeo_A Uridine-cytidine kinase 63.4 4.2 0.00014 41.6 3.5 23 39-62 27-49 (245)
368 3lw7_A Adenylate kinase relate 63.2 4.5 0.00016 37.9 3.5 19 39-58 3-21 (179)
369 2jaq_A Deoxyguanosine kinase; 63.1 4.8 0.00016 39.2 3.7 24 39-63 2-25 (205)
370 3cmu_A Protein RECA, recombina 63.0 45 0.0015 44.5 13.6 35 39-78 733-767 (2050)
371 1rz3_A Hypothetical protein rb 62.9 5.7 0.0002 39.2 4.2 33 39-77 24-56 (201)
372 2p5t_B PEZT; postsegregational 62.6 4.9 0.00017 41.3 3.8 24 39-63 34-57 (253)
373 3hjn_A DTMP kinase, thymidylat 62.5 5.7 0.0002 39.4 4.2 31 42-78 5-35 (197)
374 1uf9_A TT1252 protein; P-loop, 62.5 4.6 0.00016 39.4 3.4 23 37-60 8-30 (203)
375 2pt5_A Shikimate kinase, SK; a 62.4 4.9 0.00017 38.0 3.5 24 39-63 2-25 (168)
376 3ld9_A DTMP kinase, thymidylat 62.1 4.4 0.00015 41.4 3.2 34 39-78 23-58 (223)
377 1zd8_A GTP:AMP phosphotransfer 61.5 5.3 0.00018 40.1 3.8 26 37-63 7-32 (227)
378 2dr3_A UPF0273 protein PH0284; 61.5 6.6 0.00023 39.4 4.5 34 39-78 25-58 (247)
379 4tmk_A Protein (thymidylate ki 61.4 6.3 0.00022 39.8 4.3 33 40-78 6-39 (213)
380 3d3q_A TRNA delta(2)-isopenten 61.2 5.1 0.00018 43.6 3.8 24 39-63 9-32 (340)
381 3exa_A TRNA delta(2)-isopenten 61.2 4.2 0.00014 43.8 3.0 25 38-63 4-28 (322)
382 2chg_A Replication factor C sm 60.1 5.6 0.00019 38.7 3.6 24 39-63 40-63 (226)
383 2vos_A Folylpolyglutamate synt 59.8 6.1 0.00021 45.1 4.3 35 36-78 63-97 (487)
384 2wsm_A Hydrogenase expression/ 59.8 8.1 0.00028 38.2 4.8 35 37-78 30-64 (221)
385 3con_A GTPase NRAS; structural 59.6 4 0.00014 39.2 2.4 21 39-60 23-43 (190)
386 3n70_A Transport activator; si 59.6 7.5 0.00026 36.1 4.2 31 39-75 26-56 (145)
387 1tev_A UMP-CMP kinase; ploop, 59.2 5.7 0.00019 38.2 3.4 24 39-63 5-28 (196)
388 3ake_A Cytidylate kinase; CMP 59.2 6.4 0.00022 38.4 3.8 23 39-62 4-26 (208)
389 2bjv_A PSP operon transcriptio 58.9 7.5 0.00026 39.9 4.5 34 39-78 31-64 (265)
390 3cm0_A Adenylate kinase; ATP-b 58.7 5.9 0.0002 38.1 3.4 24 39-63 6-29 (186)
391 2qor_A Guanylate kinase; phosp 58.6 6.7 0.00023 38.7 3.9 25 38-63 13-37 (204)
392 3syl_A Protein CBBX; photosynt 58.5 9.3 0.00032 40.0 5.2 26 37-63 67-92 (309)
393 3eph_A TRNA isopentenyltransfe 58.3 5.6 0.00019 44.3 3.5 25 38-63 3-27 (409)
394 1knq_A Gluconate kinase; ALFA/ 58.1 7.3 0.00025 37.1 3.9 25 37-62 8-32 (175)
395 2bbw_A Adenylate kinase 4, AK4 57.8 6.9 0.00024 39.8 3.9 27 36-63 26-52 (246)
396 1uj2_A Uridine-cytidine kinase 57.6 5.9 0.0002 40.6 3.4 25 38-63 23-47 (252)
397 3be4_A Adenylate kinase; malar 57.6 7.2 0.00025 38.9 4.0 25 38-63 6-30 (217)
398 1u94_A RECA protein, recombina 57.4 7.5 0.00026 42.5 4.3 34 39-78 65-98 (356)
399 1aky_A Adenylate kinase; ATP:A 57.2 7.1 0.00024 38.9 3.8 25 38-63 5-29 (220)
400 1kgd_A CASK, peripheral plasma 57.2 7.4 0.00025 37.6 3.8 25 38-63 6-30 (180)
401 3fb4_A Adenylate kinase; psych 56.8 6.5 0.00022 38.9 3.4 24 39-63 2-25 (216)
402 2vo1_A CTP synthase 1; pyrimid 56.7 9.1 0.00031 40.0 4.4 39 36-79 22-61 (295)
403 1fnn_A CDC6P, cell division co 56.5 10 0.00034 40.9 5.2 35 38-78 45-80 (389)
404 2c5m_A CTP synthase; cytidine 56.3 8.1 0.00028 40.1 3.9 38 36-78 22-60 (294)
405 2w0m_A SSO2452; RECA, SSPF, un 55.9 7.4 0.00025 38.5 3.7 34 39-78 25-58 (235)
406 1rj9_A FTSY, signal recognitio 55.7 10 0.00035 40.4 4.9 35 37-77 102-136 (304)
407 4a1f_A DNAB helicase, replicat 55.5 7.8 0.00027 42.1 4.0 35 39-78 47-81 (338)
408 2v54_A DTMP kinase, thymidylat 55.1 7.8 0.00027 37.7 3.7 24 38-62 5-28 (204)
409 3dl0_A Adenylate kinase; phosp 54.9 6.9 0.00024 38.7 3.3 23 40-63 3-25 (216)
410 4ag6_A VIRB4 ATPase, type IV s 54.2 11 0.00036 41.4 4.9 37 37-79 35-71 (392)
411 3umf_A Adenylate kinase; rossm 54.0 8.9 0.0003 38.8 3.9 26 37-63 29-54 (217)
412 4e22_A Cytidylate kinase; P-lo 53.9 9.6 0.00033 39.1 4.2 27 36-63 26-52 (252)
413 3r20_A Cytidylate kinase; stru 53.9 8.6 0.0003 39.4 3.8 26 37-63 9-34 (233)
414 3e1s_A Exodeoxyribonuclease V, 53.4 15 0.00053 42.7 6.3 36 38-79 205-240 (574)
415 3c8u_A Fructokinase; YP_612366 52.8 9.3 0.00032 37.8 3.8 34 39-78 24-57 (208)
416 1w78_A FOLC bifunctional prote 52.8 9.4 0.00032 42.5 4.2 34 37-78 49-82 (422)
417 2hf9_A Probable hydrogenase ni 52.1 14 0.00049 36.5 5.1 25 38-63 39-63 (226)
418 4iin_A 3-ketoacyl-acyl carrier 51.9 5.8 0.0002 41.0 2.1 54 8-77 2-59 (271)
419 3t15_A Ribulose bisphosphate c 51.6 19 0.00064 37.8 6.2 25 38-63 37-61 (293)
420 1yrb_A ATP(GTP)binding protein 51.5 16 0.00054 37.1 5.4 33 40-78 16-48 (262)
421 1e4v_A Adenylate kinase; trans 51.5 9.7 0.00033 37.7 3.7 23 39-62 2-24 (214)
422 3cxt_A Dehydrogenase with diff 51.5 7.3 0.00025 41.0 2.9 60 8-77 5-64 (291)
423 1x6v_B Bifunctional 3'-phospho 51.2 9.7 0.00033 44.9 4.1 33 39-77 54-86 (630)
424 4gzl_A RAS-related C3 botulinu 50.9 8 0.00027 37.9 2.9 21 39-60 32-52 (204)
425 4eaq_A DTMP kinase, thymidylat 50.4 14 0.00048 37.4 4.7 32 39-77 28-59 (229)
426 2grj_A Dephospho-COA kinase; T 50.1 8.5 0.00029 38.1 3.0 23 39-62 14-36 (192)
427 4fcw_A Chaperone protein CLPB; 49.8 12 0.00042 39.0 4.4 34 39-78 49-82 (311)
428 1ly1_A Polynucleotide kinase; 49.7 12 0.0004 35.5 3.9 21 39-60 4-24 (181)
429 3foz_A TRNA delta(2)-isopenten 49.5 12 0.00041 40.2 4.2 27 36-63 8-35 (316)
430 1jbw_A Folylpolyglutamate synt 49.5 12 0.00041 41.7 4.5 35 36-78 38-72 (428)
431 1g8f_A Sulfate adenylyltransfe 49.0 12 0.0004 43.1 4.2 24 39-63 397-420 (511)
432 3tlx_A Adenylate kinase 2; str 48.8 11 0.00038 38.5 3.7 24 39-63 31-54 (243)
433 3nva_A CTP synthase; rossman f 48.3 12 0.00042 42.8 4.2 37 37-78 3-40 (535)
434 1odf_A YGR205W, hypothetical 3 48.1 16 0.00054 38.6 4.9 24 39-63 33-56 (290)
435 2z4s_A Chromosomal replication 48.1 10 0.00035 42.6 3.6 35 38-78 131-167 (440)
436 2qby_B CDC6 homolog 3, cell di 48.0 11 0.00038 40.6 3.8 25 38-63 46-70 (384)
437 3nrs_A Dihydrofolate:folylpoly 47.7 12 0.00043 41.8 4.2 35 36-78 51-85 (437)
438 2qz4_A Paraplegin; AAA+, SPG7, 47.4 12 0.00042 37.9 3.8 26 37-63 39-64 (262)
439 2xb4_A Adenylate kinase; ATP-b 47.0 11 0.00039 37.6 3.4 22 40-62 3-24 (223)
440 2zts_A Putative uncharacterize 46.5 13 0.00044 37.2 3.8 35 39-78 31-66 (251)
441 1jjv_A Dephospho-COA kinase; P 46.3 10 0.00035 37.1 2.9 22 38-60 3-24 (206)
442 1m8p_A Sulfate adenylyltransfe 46.1 11 0.00037 44.0 3.5 34 39-78 398-432 (573)
443 1e9r_A Conjugal transfer prote 46.0 14 0.00048 41.1 4.3 37 37-79 53-89 (437)
444 2www_A Methylmalonic aciduria 45.7 12 0.00041 40.6 3.5 36 37-78 74-109 (349)
445 1ex7_A Guanylate kinase; subst 45.7 12 0.00041 36.9 3.2 22 40-62 4-25 (186)
446 1e8c_A UDP-N-acetylmuramoylala 45.7 17 0.0006 41.3 5.1 35 36-78 107-141 (498)
447 2f6r_A COA synthase, bifunctio 45.7 13 0.00044 38.9 3.7 23 37-60 75-97 (281)
448 3nwj_A ATSK2; P loop, shikimat 45.6 13 0.00045 38.4 3.6 26 37-63 48-73 (250)
449 3h4m_A Proteasome-activating n 45.6 13 0.00044 38.4 3.6 26 37-63 51-76 (285)
450 2zr9_A Protein RECA, recombina 45.5 16 0.00055 39.7 4.5 34 39-78 63-96 (349)
451 1cr0_A DNA primase/helicase; R 45.5 15 0.00053 38.3 4.3 35 39-78 37-71 (296)
452 4hlc_A DTMP kinase, thymidylat 45.1 24 0.00081 35.1 5.4 30 42-78 7-36 (205)
453 3b9q_A Chloroplast SRP recepto 44.9 15 0.00052 39.0 4.1 42 30-77 92-134 (302)
454 1lv7_A FTSH; alpha/beta domain 44.8 14 0.00049 37.5 3.8 26 37-63 45-70 (257)
455 1m7g_A Adenylylsulfate kinase; 44.8 13 0.00045 36.7 3.4 34 39-77 27-60 (211)
456 2v1u_A Cell division control p 44.7 11 0.00036 40.5 2.9 26 37-63 44-69 (387)
457 2qby_A CDC6 homolog 1, cell di 44.6 13 0.00045 39.7 3.7 35 38-78 46-83 (386)
458 1ojl_A Transcriptional regulat 44.6 16 0.00055 38.7 4.3 34 39-78 27-60 (304)
459 2dyk_A GTP-binding protein; GT 44.6 13 0.00043 34.2 3.1 23 37-60 1-23 (161)
460 2b4q_A Rhamnolipids biosynthes 44.4 12 0.00041 38.8 3.2 55 8-77 5-59 (276)
461 2gks_A Bifunctional SAT/APS ki 44.4 14 0.00049 42.6 4.1 33 39-77 374-406 (546)
462 2j41_A Guanylate kinase; GMP, 44.3 12 0.00043 36.3 3.1 24 38-62 7-30 (207)
463 2wtz_A UDP-N-acetylmuramoyl-L- 43.7 20 0.00067 41.3 5.1 35 36-78 145-179 (535)
464 1d2n_A N-ethylmaleimide-sensit 43.5 13 0.00044 38.3 3.2 26 37-63 64-89 (272)
465 3pxi_A Negative regulator of g 43.1 31 0.0011 41.4 6.9 34 39-78 523-556 (758)
466 1ofh_A ATP-dependent HSL prote 42.8 15 0.0005 38.2 3.6 25 38-63 51-75 (310)
467 2p67_A LAO/AO transport system 42.6 17 0.00057 39.2 4.1 36 37-78 56-91 (341)
468 1um8_A ATP-dependent CLP prote 42.5 17 0.00057 39.5 4.1 26 37-63 72-97 (376)
469 3eag_A UDP-N-acetylmuramate:L- 42.4 15 0.0005 39.4 3.6 33 37-77 108-140 (326)
470 3tr0_A Guanylate kinase, GMP k 41.9 16 0.00055 35.5 3.5 24 38-62 8-31 (205)
471 1njg_A DNA polymerase III subu 41.8 17 0.00057 35.6 3.7 24 39-63 47-70 (250)
472 1nij_A Hypothetical protein YJ 41.6 14 0.00049 39.4 3.3 36 36-79 3-38 (318)
473 1xp8_A RECA protein, recombina 41.5 17 0.00059 39.8 4.0 34 39-78 76-109 (366)
474 1o5z_A Folylpolyglutamate synt 41.3 14 0.00047 41.5 3.2 34 37-78 52-85 (442)
475 3a00_A Guanylate kinase, GMP k 41.1 16 0.00054 35.3 3.3 24 39-63 3-26 (186)
476 2r6a_A DNAB helicase, replicat 40.9 19 0.00065 40.4 4.4 36 39-78 204-239 (454)
477 1j6u_A UDP-N-acetylmuramate-al 40.9 18 0.00061 40.9 4.1 33 37-77 114-146 (469)
478 3upu_A ATP-dependent DNA helic 40.9 31 0.0011 38.6 6.1 35 39-79 47-82 (459)
479 3uk6_A RUVB-like 2; hexameric 40.9 17 0.00059 38.9 3.9 25 38-63 71-95 (368)
480 3hws_A ATP-dependent CLP prote 40.7 19 0.00064 38.9 4.1 26 37-63 51-76 (363)
481 3asz_A Uridine kinase; cytidin 40.6 17 0.0006 35.5 3.6 24 39-63 8-31 (211)
482 2z43_A DNA repair and recombin 40.5 26 0.00088 37.4 5.1 34 39-78 109-148 (324)
483 2og2_A Putative signal recogni 40.5 19 0.00065 39.3 4.1 42 30-77 149-191 (359)
484 3tqc_A Pantothenate kinase; bi 40.5 42 0.0014 35.9 6.8 24 39-63 94-117 (321)
485 3b9p_A CG5977-PA, isoform A; A 40.1 18 0.00061 37.6 3.7 26 37-63 54-79 (297)
486 1ixz_A ATP-dependent metallopr 40.0 18 0.0006 36.8 3.6 25 38-63 50-74 (254)
487 1zp6_A Hypothetical protein AT 39.8 16 0.00056 35.0 3.1 22 39-61 11-32 (191)
488 3lnc_A Guanylate kinase, GMP k 39.5 10 0.00035 38.0 1.7 24 38-62 28-52 (231)
489 2ocp_A DGK, deoxyguanosine kin 38.8 18 0.00061 36.6 3.3 24 39-63 4-27 (241)
490 3tqf_A HPR(Ser) kinase; transf 38.5 20 0.00068 35.3 3.4 22 38-60 17-38 (181)
491 1lvg_A Guanylate kinase, GMP k 38.4 20 0.00069 35.1 3.6 25 38-63 5-29 (198)
492 1c9k_A COBU, adenosylcobinamid 38.1 23 0.00078 34.8 3.9 29 40-78 2-30 (180)
493 1vht_A Dephospho-COA kinase; s 38.1 18 0.00061 35.8 3.2 21 39-60 6-26 (218)
494 3pfi_A Holliday junction ATP-d 37.7 20 0.0007 37.9 3.8 25 38-63 56-80 (338)
495 3hdt_A Putative kinase; struct 37.4 22 0.00074 36.1 3.7 26 37-63 14-39 (223)
496 1xwi_A SKD1 protein; VPS4B, AA 37.3 27 0.00092 37.2 4.7 26 37-63 45-70 (322)
497 2h92_A Cytidylate kinase; ross 36.7 21 0.0007 35.2 3.4 23 39-62 5-27 (219)
498 1nlf_A Regulatory protein REPA 36.6 33 0.0011 35.4 5.1 24 39-63 32-55 (279)
499 3eie_A Vacuolar protein sortin 36.4 22 0.00076 37.7 3.8 26 37-63 51-76 (322)
500 2fv8_A H6, RHO-related GTP-bin 36.3 17 0.00057 35.5 2.6 22 38-60 26-47 (207)
No 1
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=100.00 E-value=4.8e-123 Score=1136.30 Aligned_cols=813 Identities=70% Similarity=1.157 Sum_probs=643.6
Q ss_pred hhHHHHH-HHHhhccCCCCCCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCC-----CCceeEEcccccCC
Q 002941 11 DHHRRIL-LRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-----NKKFVYLKPIQTGY 84 (863)
Q Consensus 11 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~-----g~~v~~~KPi~~g~ 84 (863)
.||...+ -|-.++.++-..|..++.++++|||+||+|+||||+||+|||++|+ ++ |++|+|||||++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~gt~s~vGKT~vt~gL~r~l~-----~~~~~~~G~~V~~fKPv~~g~ 81 (831)
T 4a0g_A 7 HHHSSGLVPRGSHMKSTSVSPFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFL-----LQQPSSSATKLLYLKPIQTGF 81 (831)
T ss_dssp --------------------CCEEECSSCEEEEEESSSSSCHHHHHHHHHHHHH-----SCSSCCTTCEEEEEEEEECST
T ss_pred cccccCccccccccCCCCCCCccCccccccEEEEECCCCCCHHHHHHHHHHHHH-----hcccccCCceEEEEcccccCC
Confidence 3555544 3444555555567788889999999999999999999999999999 88 99999999999999
Q ss_pred CCCCchhHHHhhccccccccCCCccccccchhhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCccc
Q 002941 85 PHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVS 164 (863)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (863)
..++|..++++.+++.+++|. ....+++..+.......+...-.++..++|+.+. |.++... +. ..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~n~--da~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~-~~----~~~ 148 (831)
T 4a0g_A 82 PSDSDSRFVFSKLDSLSLRRQ--IPISISNSVLHSSLPAAKSLGLNVEVSESGMCSL------NFRDEKT-VT----GAP 148 (831)
T ss_dssp TTCCHHHHHHHHHHHHHHHHT--CCCEEEEEEEEEEHHHHHHHTCCCCBCTTSEEEE------EEEEEEC-CT----TSC
T ss_pred CcCcchHHHHHhhccccccch--hHHHHHHHHcCCChhhHhhcccCCcccCCceEee------ccccccc-cc----ccc
Confidence 888888888887766655552 4455666555544444333223333444444433 2221110 01 123
Q ss_pred ccccccceeeCCCCChHHHHhhhcCCCCChhHHHHHHHHHHHccccccccccc--cCCCceEEEeCCCcccccCCCCCcH
Q 002941 165 ELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESER--GKMEILCIVETAGGVASPGPSGSLQ 242 (863)
Q Consensus 165 ~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~lvEGagg~~~p~~~~~~~ 242 (863)
...+.++|.|+.|+|||++++++ +..++.+.|.+.+.+..+++ +++++ ...+|++|||||||+++|+..+.++
T Consensus 149 ~~~~~~~~~~~~p~sp~~aa~~~-~~~~~~~~i~~~~~~~l~~~----a~~~~~~~~~~D~vvVEGaGGl~~p~~~~~~~ 223 (831)
T 4a0g_A 149 ELLCKTLYAWEAAISPHLAAERE-NATVEDSVVLQMIEKCLKEE----MECGVKSEKSDLLCLVETAGGVASPGPSGTLQ 223 (831)
T ss_dssp EEEEEEEEECSSSSCHHHHHHHT-TCCCCHHHHHHHHHHHHHHH----C---------CEEEEEECCSSTTCBCTTSCBH
T ss_pred cccccceeeecCCcCHHHHHHHc-CCCCCHHHHHHHHHHHHHhh----hhccccccccCCEEEEECCCCccCCCCCCccH
Confidence 45678999999999999999999 99999999999999844321 00000 0035999999999999999999999
Q ss_pred hHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCCCHHHHHHhhcCCCCeeecCCCCCCCchhhh
Q 002941 243 CDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLM 322 (863)
Q Consensus 243 ~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~~~~~~~~~~~~~~pvl~~p~~~~~~~~~~~ 322 (863)
+|||+.+++|||||++.++|+||++++++++++.+|++|+|||+|+....+.+.+.++++.++||..||.+|.+...+|.
T Consensus 224 adla~~l~~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~~~~~~~l~~~l~~~~~v~vLg~lP~~~~~~l~ 303 (831)
T 4a0g_A 224 CDLYRPFRLPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPSDDLI 303 (831)
T ss_dssp HHHTGGGCCCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCSSCTHHHHHHHTTTSSCEEEECCCCCCTTCCCH
T ss_pred HHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCchhHHHHHHHHHHhCCCceeeCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999889999999998666666655666666667899
Q ss_pred hhhhhccchHHHHHHHHHHHHHHHhHhhcChhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEE
Q 002941 323 EWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQF 402 (863)
Q Consensus 323 ~~l~~~~~~~~~l~~~L~~~~~~r~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~yl 402 (863)
+|++.....+..++++|..++.+|+.+++++.+++++++|||||++..+...+|++|++++|.|+|+||.||++++++||
T Consensus 304 ~~~~~~~~~~~~~~~~l~~~~~~r~~~l~~~~~~~~~~~whp~t~~~~~~~~~p~~i~~a~G~g~~l~D~dG~~~~~~yl 383 (831)
T 4a0g_A 304 EWFVESDGVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQF 383 (831)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCCTTCCGGGCCGGGCEEEEEEETTEEEEEEHHHHSEEEEEE
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccCcccccCCCCeEEEEeeccceEEEECCCCccchhee
Confidence 99999989999999999999999999999999999999999999998776667899999888889999999987777999
Q ss_pred eeecccccccCCCCC-cHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHH
Q 002941 403 DACASWWTQGPDATL-QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 481 (863)
Q Consensus 403 D~~sg~~~~~lGh~~-~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA 481 (863)
|++|||||+++|| + ||+|++|+++|++++.|+++.+++++++.+|||+|++++|.+++++|||+||||||||+|||+|
T Consensus 384 D~~sg~~~~~lGh-~~~p~i~~Ai~~Q~~~l~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A 462 (831)
T 4a0g_A 384 DACASWWTQGPDP-TFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMA 462 (831)
T ss_dssp ETTHHHHTCCCCH-HHHHHHHHHHHHHHHHHSSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred eecccHhhcCCCC-CCCHHHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHH
Confidence 9999999999999 8 9999999999999999987777899999999999999998665789999999999999999999
Q ss_pred HHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceee
Q 002941 482 FRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWI 561 (863)
Q Consensus 482 ~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 561 (863)
+|+|+.++|.+.. ++ ...+.|++||+++++|||+|++++++|+...|+..+..+|+.++++++++|.+.+.+++++
T Consensus 463 ~r~~~~~~g~~~~--~~--~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 538 (831)
T 4a0g_A 463 FRKFCVDHNFCEA--TE--EEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWN 538 (831)
T ss_dssp HHHHHHTTTC-------------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEE
T ss_pred HHHHHhhcCCCcc--cc--ccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceE
Confidence 7778777765210 00 0001248999999999999999999999887775434567767777888887766678889
Q ss_pred ecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHH
Q 002941 562 LSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPL 641 (863)
Q Consensus 562 ~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~ 641 (863)
+++|+.|+... ....+|.+..+.|+...+...+...|.+.+++.|++.+...+++++||||+|||+||+||++++|++
T Consensus 539 ~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~ 616 (831)
T 4a0g_A 539 ISLPESFSEIA--PEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPL 616 (831)
T ss_dssp EECCTTSCCCC--SSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHH
T ss_pred ecCCccccccc--cccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHH
Confidence 99997664211 0112333222223222222345566778888888653333467899999999966999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceee
Q 002941 642 FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALL 721 (863)
Q Consensus 642 fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~ 721 (863)
||++|+++|++||++||+|||+|||||||++|+++++|+.|||+||||+|||||+|+|++++++++++.|....+.+.+.
T Consensus 617 ~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~ 696 (831)
T 4a0g_A 617 FQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALL 696 (831)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCC
T ss_pred HHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcEEEEecccccCccCcEEEEECHHHHHHHhcccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998655556688
Q ss_pred cccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCc
Q 002941 722 HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYG 801 (863)
Q Consensus 722 ~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~ 801 (863)
|++||++||++|||++|+|++++++++.+++.++++++++.|.+.+.+.+.++|.|.+|||.|+|+++++..+..+..+.
T Consensus 697 hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~ 776 (831)
T 4a0g_A 697 HGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYA 776 (831)
T ss_dssp CCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC---------
T ss_pred eecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCccccccc
Confidence 99999999999999999999998888888888888877665544555667788999999999999999998654333344
Q ss_pred hHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 802 SLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 802 ~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
...+..+.+.|+++||+++|.|+++||+||+++|++|||+++++|+++++++
T Consensus 777 ~~~a~~~~~~l~e~Gv~v~p~g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 777 SLYAKSLLIMLREDGIFTRPLGNVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp CHHHHHHHHHHHHTTEECCCBTTEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHCCcEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4467789999999999999999999999999999999999999999887543
No 2
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=100.00 E-value=2.6e-82 Score=732.21 Aligned_cols=442 Identities=19% Similarity=0.236 Sum_probs=371.4
Q ss_pred hhcChhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHH
Q 002941 349 RLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYT 428 (863)
Q Consensus 349 ~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q 428 (863)
+.+.+..++.+|.|||||++..+.+.+|++|++ |+|+|+||+||| +|||+++|+|++++|| +||+|++|+++|
T Consensus 23 ~~~~~~~~~~~~~~h~~t~~~~~~~~~P~vi~r--g~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q 95 (473)
T 4e3q_A 23 KPQSWEARAETYSLYGFTDMPSLHQRGTVVVTH--GEGPYIVDVNGR----RYLDANSGLWNMVAGF-DHKGLIDAAKAQ 95 (473)
T ss_dssp CCCSHHHHHHHHBCCSSCCHHHHHHHCCEEEEE--EETTEEEETTCC----EEEETTTTTTTCTTCS-CCHHHHHHHHHH
T ss_pred CcccHHHHHhhhcCCCCCChhhhccCCCEEEEe--eecCEEEeCCCC----EEEEcccCHHHhhccC-CCHHHHHHHHHH
Confidence 344677889999999999987665667899998 788999999999 9999999999999999 899999999999
Q ss_pred HHhccccc-CCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCcccccccc
Q 002941 429 AARFGHVM-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL 507 (863)
Q Consensus 429 ~~~~~~~~-~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~ 507 (863)
++++.+.. +.+.++++..+|||+|++++|.+ +++|+|+||||||||+|||+| |+|+..+|++ + |+
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGsEA~e~AiKlA-r~~~~~~g~~-~-----------r~ 161 (473)
T 4e3q_A 96 YERFPGYHAFFGRMSDQTVMLSEKLVEVSPFD-SGRVFYTNSGSEANDTMVKML-WFLHAAEGKP-Q-----------KR 161 (473)
T ss_dssp HHHCCCCCCCTTEEEHHHHHHHHHHHHHSSCS-SCEEEEESSHHHHHHHHHHHH-HHHHHHTTCT-T-----------CC
T ss_pred HHhcccccccccccCHHHHHHHHHHHhhCCCC-ccEEEEeCchHHHHHHHHHHH-HHHHHhcCCC-C-----------cc
Confidence 99988753 44567899999999999999866 789999999999999999999 6788887763 4 38
Q ss_pred EEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchh
Q 002941 508 KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587 (863)
Q Consensus 508 ~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~ 587 (863)
+||+|+++|||+|++++++|+.+ ++. . +.+|. ++..+++.|++++....
T Consensus 162 ~ii~~~~~yHG~t~~a~s~tg~~-~~~--------~----~~~~~----~~~~~~~~p~~~~~~~~-------------- 210 (473)
T 4e3q_A 162 KILTRWNAYHGVTAVSASMTGKP-YNS--------V----FGLPL----PGFVHLTCPHYWRYGEE-------------- 210 (473)
T ss_dssp EEEEETTCCCCSSHHHHHHSCCG-GGG--------G----GTCSC----TTEEEECCCCHHHHSCT--------------
T ss_pred eEEEeeceECCCccccccccccc-ccc--------c----cCCCC----CcccccCCCcccccccc--------------
Confidence 99999999999999999999854 221 1 11222 35677888876642100
Q ss_pred hcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccccc
Q 002941 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667 (863)
Q Consensus 588 ~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfG 667 (863)
....+.+...+.+.+++.+.+ .++++|||||+||| ||+||+++||++||++|+++|++||+|||+|||+||||
T Consensus 211 --~~~~~~~~~~~~~~l~~~i~~----~~~~~iAavi~EPi-qg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfG 283 (473)
T 4e3q_A 211 --GETEEQFVARLARELEETIQR----EGADTIAGFFAEPV-MGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFG 283 (473)
T ss_dssp --TCCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSS
T ss_pred --cchhhHHHHHHHHHHHHHHHh----hCCCceEEEEeCCc-cCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCC
Confidence 011122333445566666653 56789999999998 99999999999999999999999999999999999999
Q ss_pred ccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcC-CccceeecccCCCccHHHHHHHHHHHHHhcCh
Q 002941 668 RLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-SKLKALLHGHSYSAHALGCAAAAKSIKWFKDP 746 (863)
Q Consensus 668 RtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~-~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~ 746 (863)
|||++|+++++|++|||+|+||+|+|||+|+|++++++++++.+... .....+.|++||+|||++||||+|+|++++++
T Consensus 284 RtG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~ 363 (473)
T 4e3q_A 284 RTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNE 363 (473)
T ss_dssp TTSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHS
T ss_pred cccchhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhccc
Confidence 99999999999999999999999999999999999999999988642 11235679999999999999999999999988
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCc--hHHHHHHHHHHHHCCcEEEecC
Q 002941 747 QTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYG--SLYAASLLKKLREDGVYMRPLG 823 (863)
Q Consensus 747 ~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~--~~~~~~l~~~l~e~GV~~~p~g 823 (863)
++.+++.+.++++++.| .+ +.++|.|++|||.|+|++|++..+. ++.++. ......+.+.|+++||++++.|
T Consensus 364 ~l~~~~~~~g~~l~~~L----~~-l~~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g 438 (473)
T 4e3q_A 364 GLAENVRRLAPRFEERL----KH-IAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLG 438 (473)
T ss_dssp SHHHHHHHHHHHHHHHH----HH-HTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEET
T ss_pred cHHHHHHHHHHHHHHHH----HH-HhcCCCeeEEeecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEecC
Confidence 88888888888887755 33 4567889999999999999998764 223332 3457789999999999999999
Q ss_pred CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 824 NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 824 ~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+.++|.||+++|++|||+++++|+++|+++.
T Consensus 439 ~~i~l~PPL~it~~eid~~~~~l~~al~~v~ 469 (473)
T 4e3q_A 439 QSVVLCPPFILTEAQMDEMFDKLEKALDKVF 469 (473)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998764
No 3
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=100.00 E-value=2.6e-75 Score=671.37 Aligned_cols=399 Identities=23% Similarity=0.242 Sum_probs=331.5
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|++|++ |+|+|+||.||| +|||+++|+|++++|| +||+|++|+++|++++.|..+...++++..+|+|+|+++
T Consensus 47 P~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~ 119 (456)
T 4atq_A 47 PVYVED--ADGGIIRDVDGN----SFIDLGSGIAVTSVGA-SDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRL 119 (456)
T ss_dssp SSCEEE--EETTEEEETTSC----EEEESSHHHHTCTTCT-TCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHH
T ss_pred CCeEEe--eecCEEEeCCCC----EEEEccccHHHHhcCC-CCHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHh
Confidence 456776 788999999999 9999999999999999 899999999999999998876667789999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCC-CCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP-YTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~-~~~ 534 (863)
+|.+.+++|+|+||||||||+|||+| |.| +|| ++||+|+++|||+|++++++++... ++.
T Consensus 120 ~p~~~~~~v~f~~sGsEA~e~AlklA-r~~-------t~r-----------~~ii~~~~~yHG~t~~als~t~~~~~~~~ 180 (456)
T 4atq_A 120 TPGDHAKRTVLFNSGAEAVENAVKVA-RLA-------TGR-----------DAVVAFDHAYHGRTNLTMALTAKAMPYKT 180 (456)
T ss_dssp SSCSSCEEEEEESSHHHHHHHHHHHH-HHH-------HCC-----------CEEEEETTCCCCSSHHHHHHCCCCTTTTT
T ss_pred CCCCCCcEEEEeCChHHHHHHHHHHH-hhh-------hcC-----------CeEEEEecccCCccccccccccCcccccc
Confidence 98655789999999999999999999 666 454 8999999999999999999987553 221
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
.++++ .+++.++|+|+.++.. ....++ .+. .....+.+++ .
T Consensus 181 --------~~~p~--------~~~~~~~p~~~~~~~~---------------~~~~~~-~~~----~~~~~~~~e~---~ 221 (456)
T 4atq_A 181 --------NFGPF--------APEVYRMPMSYPFREE---------------NPEITG-AEA----AKRAITMIEK---Q 221 (456)
T ss_dssp --------TSCSC--------CSSEEEECCCCGGGCS---------------STTCCH-HHH----HHHHHHHHHH---H
T ss_pred --------CCCCc--------cccceecccccccccC---------------CCcccH-HHH----HHHHHHHHHH---h
Confidence 11221 1345667777544210 000011 111 1222223332 2
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.++++|||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||++|||
T Consensus 222 ~~~~~iAAvivEPi-qg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggg 300 (456)
T 4atq_A 222 IGGDQVAAIIIEPI-QGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAGG 300 (456)
T ss_dssp TCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTT
T ss_pred hcCCceEEEEeccc-cCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhhhcccCc
Confidence 35679999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc-
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS- 773 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~- 773 (863)
+|+|++++++++++.+.. ..|++||+|||++||||+|+|++++++++.+++.+.++++.+.|+ ++.++
T Consensus 301 -~P~~av~~~~~i~~~~~~------~~~~~Tf~gnpla~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~----~l~~~~ 369 (456)
T 4atq_A 301 -LPLSAITGRADLLDAVHP------GGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLR----ELAAEL 369 (456)
T ss_dssp -SSCEEEEEEHHHHTTSCT------TSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH----HHHHHC
T ss_pred -CCceeeEecHHHHhcccc------cCCCCCCCCChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHH----HHHHhc
Confidence 799999999999998864 258999999999999999999999988888888888888877654 34443
Q ss_pred ----CCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHH
Q 002941 774 ----HRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 774 ----~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L 846 (863)
+|.|++|||.|+|++|++.++..+ .+....+..+...|+++||++.+. ++++||.||+++|+++||+++++|
T Consensus 370 ~~~~~~~v~~VRG~Gl~~giel~~~~~~-~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~~irl~PpL~it~~~id~~l~~l 448 (456)
T 4atq_A 370 SAGGGSVVGDIRGRGAMLAIELVQPGSK-EPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVL 448 (456)
T ss_dssp C-----CEEEEEEETTEEEEEEBCTTSC-CBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHH
T ss_pred ccccCCceEEeeecceEEEEEEecCCCC-CcCHHHHHHHHHHHHHCCCEEEecCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999876522 334556788999999999999865 489999999999999999999999
Q ss_pred HHHHHH
Q 002941 847 YQRLEE 852 (863)
Q Consensus 847 ~~~l~~ 852 (863)
+++|+.
T Consensus 449 ~~al~a 454 (456)
T 4atq_A 449 AAAIKA 454 (456)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
No 4
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=100.00 E-value=1.9e-68 Score=612.31 Aligned_cols=419 Identities=16% Similarity=0.187 Sum_probs=344.3
Q ss_pred hHHHHHHHHHHHHHHHhHhhcChhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeeccccc
Q 002941 331 VFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT 410 (863)
Q Consensus 331 ~~~~l~~~L~~~~~~r~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~ 410 (863)
..++.+....+++.++.+++..+.+++.+++...-+........-|++|++ |+|+|+||+||| +|||+++|||+
T Consensus 25 ~~~~~~~~~~~~~~~~~p~s~~~~~~a~~~~pgg~~~~~~~~~~~P~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~ 98 (454)
T 4ao9_A 25 AIDQALADAYRRFTDANPASQRQFEAQARYMPGANSRSVLFYAPFPLTIAR--GEGAALWDADGH----RYADFIAEYTA 98 (454)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTTSGGGCSSGGGCCSSCCCEEEE--EETTEEEETTCC----EEEESSGGGGT
T ss_pred hhhhhHHHHHHHHhhcCcHhHHHHHHHhhhCCCCCCCCccccCCCCccEEE--eecCEEEECCCC----EEEEccccHHh
Confidence 345556667788999999999999999887743222211111223667776 788999999999 99999999999
Q ss_pred ccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcc
Q 002941 411 QGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (863)
Q Consensus 411 ~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G 490 (863)
+++|| +||+|++|+.+|+++..+.. ..++...+|+|+|++.+|. +++|+|+||||||||.|||+| |.|
T Consensus 99 ~~lGH-~hp~v~~Av~~q~~~~~~~~---~~~~~~~~lae~l~~~~p~--~~~v~f~~SGsEA~e~AiklA-r~~----- 166 (454)
T 4ao9_A 99 GVYGH-SAPEIRDAVIEAMQGGINLT---GHNLLEGRLARLICERFPQ--IEQLRFTNSGTEANLMALTAA-LHF----- 166 (454)
T ss_dssp TTTCS-CCHHHHHHHHHHHHTCSCCC---SEESSHHHHHHHHHHHSTT--CSEEEEESSHHHHHHHHHHHH-HHH-----
T ss_pred hcccC-CCHHHHHHHHHHHhcCCCcc---CCcHHHHHHHHHHHHhCCC--CCEEEEeCchHHHHHHHHHHH-Hhc-----
Confidence 99999 89999999999999876643 4577889999999999984 799999999999999999999 667
Q ss_pred ccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhh
Q 002941 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (863)
Q Consensus 491 ~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (863)
||| ++||.|+++|||+|.++++.++...+. . . ...+|
T Consensus 167 --tgr-----------~~ii~~~~~yHG~t~~~~~~~~~~~~~------------------~-----~--~~~~p----- 203 (454)
T 4ao9_A 167 --TGR-----------RKIVVFSGGYHGGVLGFGARPSPTTVP------------------F-----D--FLVLP----- 203 (454)
T ss_dssp --HTC-----------CEEEEETTCBCSTTCBBSSSBCTTSCC------------------S-----E--EEEEC-----
T ss_pred --ccC-----------CeEEEEeCCcCCccccccccccCccCC------------------C-----C--cccCC-----
Confidence 464 899999999999999887765432111 0 0 01112
Q ss_pred hhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHH
Q 002941 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (863)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc 650 (863)
.+| .+.+++.|++ +++++||||+||| ||++|+++|+++||++|+++|
T Consensus 204 -------------------~nd--------~~~l~~~l~~-----~~~~iAavIvEPv-~g~~G~~~p~~~fL~~lr~lc 250 (454)
T 4ao9_A 204 -------------------YND--------AQTARAQIER-----HGPEIAVVLVEPM-QGASGCIPGQPDFLQALRESA 250 (454)
T ss_dssp -------------------TTC--------HHHHHHHHHH-----TGGGEEEEEECSE-ESTTTCEECCHHHHHHHHHHH
T ss_pred -------------------Cch--------HHHHHHHHhh-----cCCceEEEEeccc-cCCCCccCCchhhHHHHHHHH
Confidence 123 2456666754 4678999999998 999999999999999999999
Q ss_pred HHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccH
Q 002941 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHA 730 (863)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~p 730 (863)
++||++||+||||| ||+|++|+++++|++|||+|+||+|||| +|+|++++++++++.+.... ..+.|++||+|||
T Consensus 251 ~~~g~lLI~DEV~t--GR~G~~~a~e~~gv~PDi~t~gK~lggG-~Piga~~~~~ei~~~~~~~~--~~~~h~~T~~gnP 325 (454)
T 4ao9_A 251 TQVGALLVFDEVMT--SRLAPHGLANKLGIRSDLTTLGKYIGGG-MSFGAFGGRADVMALFDPRT--GPLAHSGTFNNNV 325 (454)
T ss_dssp HHHTCEEEEECTTG--GGGSTTCHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHGGGCTTT--CSCCCCCTTTTCH
T ss_pred hhcCCEEEEECCCc--CCCccccchhccCCCCcEEEeccccCCC-CcceeeeeHHHHHHHHhhcc--CCccccCCCCCCH
Confidence 99999999999999 5999999999999999999999999999 79999999999999986532 3467999999999
Q ss_pred HHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCC-----CCchHHH
Q 002941 731 LGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA-----GYGSLYA 805 (863)
Q Consensus 731 la~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~-----~~~~~~~ 805 (863)
++|||++|+|++++++++++++.+++++|++.| .++.++++.+.+|||.|+|++++|.+.+... .......
T Consensus 326 la~AAala~L~~l~~~~~~~~~~~~g~~l~~~L----~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~ 401 (454)
T 4ao9_A 326 MTMAAGYAGLTKLFTPEAAGALAERGEALRARL----NALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLR 401 (454)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH----HHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHH
T ss_pred HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH----HHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHH
Confidence 999999999999999999999999888888755 5567788999999999999999997653111 1123456
Q ss_pred HHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 806 ASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 806 ~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
..++..|+++||++.|.++ +.+++.+|++|||+++++|+++|.++..
T Consensus 402 ~~~~~~ll~~Gv~~~p~~~---~~~s~~~T~~dId~~l~al~~~l~~~~a 448 (454)
T 4ao9_A 402 QLLFFHLLNEDIYSSPRGF---VVLSLPLTDADIDRYVAAIGSFIGGHGA 448 (454)
T ss_dssp HHHHHHHHHTTEECCTTCE---EECCTTCCHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHCCEEEcCCCC---EEEeCCCCHHHHHHHHHHHHHHHHhccc
Confidence 6788999999999998774 3467789999999999999999988654
No 5
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=100.00 E-value=8.2e-65 Score=588.89 Aligned_cols=440 Identities=19% Similarity=0.222 Sum_probs=364.7
Q ss_pred cChhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHH
Q 002941 351 CDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAA 430 (863)
Q Consensus 351 ~~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~ 430 (863)
.++.+.+++++||||+++..+....|.++++ |+|+++||.||+ +|||+++++|++++|| +||+|++|+.+|++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~G~~~~d~~G~----~ylD~~s~~~~~~lGh-~~p~v~~A~~~~l~ 84 (476)
T 3i5t_A 12 GAVGAAMRDHILLPAQEMAKLGKSAQPVLTH--AEGIYVHTEDGR----RLIDGPAGMWCAQVGY-GRREIVDAMAHQAM 84 (476)
T ss_dssp -CHHHHHHHHBCCTTEEGGGTTTCCCCBEEE--EEBTEEEETTCC----EEEETTHHHHTCTTCB-CCHHHHHHHHHHHH
T ss_pred hHHHhhcccccccCcccccccccCCCeeEEE--eecCEEEECCCC----EEEECCCchhhccCCC-CCHHHHHHHHHHHH
Confidence 3567788899999999987766666788887 788999999999 9999999999999999 89999999999999
Q ss_pred hcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEE
Q 002941 431 RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVL 510 (863)
Q Consensus 431 ~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II 510 (863)
++.+.....+.++...+|+++|++++|.+ .++|+|+|||+|||+.|||++ +.|+..+|.+ || .+||
T Consensus 85 ~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~Aik~a-~~~~~~~g~~-~~-----------~~vi 150 (476)
T 3i5t_A 85 VLPYASPWYMATSPAARLAEKIATLTPGD-LNRIFFTTGGSTAVDSALRFS-EFYNNVLGRP-QK-----------KRII 150 (476)
T ss_dssp HCCCCCTTTCBCHHHHHHHHHHHTTSSTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHTTCT-TC-----------CEEE
T ss_pred hccCcccCccCCHHHHHHHHHHHhcCCCC-cCEEEEeCchHHHHHHHHHHH-HHHHHhcCCC-CC-----------CEEE
Confidence 98775433578999999999999999754 689999999999999999999 5677777763 43 7899
Q ss_pred EecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcc
Q 002941 511 ALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590 (863)
Q Consensus 511 ~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (863)
+++++|||.+.+++++++.+.|+..+ . ++ .+++.++++|..|++ ++
T Consensus 151 ~~~~~yHg~~~~~~~~~~~~~~~~~~--------~----~~----~~~~~~~~~p~~~~~----------------~~-- 196 (476)
T 3i5t_A 151 VRYDGYHGSTALTAACTGRTGNWPNF--------D----IA----QDRISFLSSPNPRHA----------------GN-- 196 (476)
T ss_dssp EETTCCCCSSHHHHHTCCCGGGCTTS--------C----CC----CTTEEEECCCCGGGC----------------TT--
T ss_pred EEcCCcCcCChhhccccCChhhcccc--------C----CC----CCCcEEeCCCccccc----------------CC--
Confidence 99999999999999998876654321 1 11 135567777765521 11
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC
Q 002941 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670 (863)
Q Consensus 591 ~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG 670 (863)
.+.+.+...+.+.||+.+++ .+++++++||+||+ ++++|+++++++||++|+++|++||++||+|||||||||+|
T Consensus 197 ~~~~~~~~~~~~~le~~i~~----~~~~~~aavi~ep~-~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G 271 (476)
T 3i5t_A 197 RSQEAFLDDLVQEFEDRIES----LGPDTIAAFLAEPI-LASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCG 271 (476)
T ss_dssp SCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred CchHHHHHHHHHHHHHHHHh----cCCCCEEEEEECCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccc
Confidence 12223444556778877753 23468999999998 99999999999999999999999999999999999999999
Q ss_pred Ccchhh-hcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCC-ccceeecccCCCccHHHHHHHHHHHHHhcChhh
Q 002941 671 VETTAD-LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQT 748 (863)
Q Consensus 671 ~~~a~e-~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~-~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l 748 (863)
++|+++ ++|+.||++||||+|+|||+|+|++++++++++.+.... ..+.+.|++||++||++|+|++++|++++++++
T Consensus 272 ~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~ 351 (476)
T 3i5t_A 272 EWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGI 351 (476)
T ss_dssp SSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHTTH
T ss_pred CceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHhHHH
Confidence 999999 999999999999999999999999999999999987421 123467899999999999999999999977778
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCc--hHHHHHHHHHHHHCCcEEEecCCE
Q 002941 749 NHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYG--SLYAASLLKKLREDGVYMRPLGNV 825 (863)
Q Consensus 749 ~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~--~~~~~~l~~~l~e~GV~~~p~g~~ 825 (863)
.++++++++++++.| . .+.++|.+..+++.|+|+++++.++. +..++. ...+..+++.|+++||++++.|+.
T Consensus 352 ~~~~~~~~~~l~~~L----~-~l~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g~~ 426 (476)
T 3i5t_A 352 VDQAREMADYFAAAL----A-SLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPLGDL 426 (476)
T ss_dssp HHHHHHHHHHHHHHH----H-TTTTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEETTE
T ss_pred HHHHHHHHHHHHHHH----H-HHhcCCCeEEEEecCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEecCCE
Confidence 888888888887754 3 24578899999999999999998643 122221 124667889999999999999999
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 826 IYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 826 lr~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
+||+||+++|+++|++++++|+++++++.+
T Consensus 427 iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~ 456 (476)
T 3i5t_A 427 CVISPPLIISRAQIDEMVAIMRQAITEVSA 456 (476)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987653
No 6
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=100.00 E-value=4.1e-65 Score=590.85 Aligned_cols=434 Identities=19% Similarity=0.298 Sum_probs=357.8
Q ss_pred hhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhc
Q 002941 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~ 432 (863)
+.+++.+++||||+++..+....|.++++ |+|+++||.||+ +|||+++|+|++++|| +||+|++|+.+|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~G~~l~d~~G~----~ylD~~s~~~~~~lGh-~~p~v~~A~~~~~~~~ 87 (472)
T 3hmu_A 15 LQALDAAHHLHPFSANNALGEEGTRVITR--ARGVWLNDSEGE----EILDAMAGLWCVNIGY-GRDELAEVAARQMREL 87 (472)
T ss_dssp HHHHHHHHEECTTEEHHHHHHHCCEEEEE--EEBTEEEETTCC----EEECTTHHHHTCTTCB-CCHHHHHHHHHHHHHC
T ss_pred HHHHHHhhccCCcccccccccCCCeeEEE--eecCEEEECCCC----EEEECCCchhhccCCC-CCHHHHHHHHHHHHhc
Confidence 44566788999999865443335778887 788999999999 9999999999999999 8999999999999998
Q ss_pred cc-ccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEE
Q 002941 433 GH-VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (863)
Q Consensus 433 ~~-~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~ 511 (863)
.+ ..+..++++...+|+++|++++|.+ .++|+|+|||+|||+.|+|++ +.|+..+|.+ +| .+||+
T Consensus 88 ~~~~~~~~~~~~~~~~lae~l~~~~~~~-~~~v~~~~sGseA~~~aik~a-~~~~~~~g~~-~~-----------~~ii~ 153 (472)
T 3hmu_A 88 PYYNTFFKTTHVPAIALAQKLAELAPGD-LNHVFFAGGGSEANDTNIRMV-RTYWQNKGQP-EK-----------TVIIS 153 (472)
T ss_dssp SCCCSSSSEECHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTCT-TC-----------CEEEE
T ss_pred cccccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHH-HHHHHhcCCC-CC-----------CEEEE
Confidence 73 3344578899999999999999754 689999999999999999999 5677777653 43 78999
Q ss_pred ecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhccc
Q 002941 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (863)
Q Consensus 512 ~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (863)
++++|||++.+++++++.+.|+.. ++ + .+++.+++.|.+|++.+ + .
T Consensus 154 ~~~~yHg~t~~~~~~~~~~~~~~~--------~~-----~----~~~~~~v~~p~~~~~~~--------------~---~ 199 (472)
T 3hmu_A 154 RKNAYHGSTVASSALGGMAGMHAQ--------SG-----L----IPDVHHINQPNWWAEGG--------------D---M 199 (472)
T ss_dssp ETTCCCCSSHHHHHHSCCHHHHHT--------TC-----C----CSSEEEECCCCHHHHCT--------------T---C
T ss_pred EcCcCCCccHHhhhccCChhhccc--------cC-----C----CCCcEEeCCCccccCCc--------------c---c
Confidence 999999999999999886554321 11 1 13566778886653210 0 1
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC
Q 002941 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (863)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~ 671 (863)
+.+.+...+.+.|++.+++ .+++++++||+||+ ++++|++++|++||++|+++|++||++||+|||||||||+|+
T Consensus 200 ~~~~~~~~~~~~le~~i~~----~~~~~~aavi~epv-~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~ 274 (472)
T 3hmu_A 200 DPEEFGLARARELEEAILE----LGENRVAAFIAEPV-QGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGN 274 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred CHHHHHHHHHHHHHHHHHh----cCCCCEEEEEEcCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCc
Confidence 2123334446777777753 23578999999997 999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHh
Q 002941 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN 751 (863)
Q Consensus 672 ~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~ 751 (863)
+|+++++|+.||++||||+||||++|+|++++++++++.+.. ..+.|++||++||++|+|++++|++++++++.++
T Consensus 275 ~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~----~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~ 350 (472)
T 3hmu_A 275 WFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGK----DEFNHGYTYSGHPVAAAVALENLRILEEENILDH 350 (472)
T ss_dssp SCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTT----SCBCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhccc----CCccccCCCCCCHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999998999999999999999842 2357899999999999999999999977778888
Q ss_pred HH-HHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCc---hHHHHHHHHHHHHCCcEEEecCCEE
Q 002941 752 II-PERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYG---SLYAASLLKKLREDGVYMRPLGNVI 826 (863)
Q Consensus 752 l~-~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~---~~~~~~l~~~l~e~GV~~~p~g~~l 826 (863)
++ ++++++++.| +.+.++|.+.++++.|+|+++++..+. +..++. ...+..+++.|+++||++++.|+.+
T Consensus 351 ~~~~~~~~l~~~L-----~~l~~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g~~i 425 (472)
T 3hmu_A 351 VRNVAAPYLKEKW-----EALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVGDRM 425 (472)
T ss_dssp HHHTHHHHHHHHH-----HGGGGSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEETTEE
T ss_pred HHHHHHHHHHHHH-----HHHhcCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEecCCEE
Confidence 88 8887777754 234568899999999999999997542 111211 2346788999999999999999999
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 827 YLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 827 r~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
||+||+++|++++++++++|+++++++.+
T Consensus 426 Ri~p~~~~t~e~i~~~l~~l~~~l~~~~~ 454 (472)
T 3hmu_A 426 IISPPLVITPAEIDEMFVRIRKSLDEAQA 454 (472)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988754
No 7
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=100.00 E-value=4e-61 Score=554.66 Aligned_cols=438 Identities=18% Similarity=0.278 Sum_probs=341.7
Q ss_pred ChhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHh
Q 002941 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (863)
Q Consensus 352 ~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~ 431 (863)
++.+++.+++||||+++..+....|.++++ |+|+++||.||+ +|||+++++|++++|| +||+|++|+.+|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~G~~~~d~~g~----~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~ 81 (459)
T 4a6r_A 9 QWRELDAAHHLHPFTDTASLNQAGARVMTR--GEGVYLWDSEGN----KIIDGMAGLWCVNVGY-GRKDFAEAARRQMEE 81 (459)
T ss_dssp -------------------------CCEEE--EEBTEEEETTCC----EEEETTHHHHTCTTCB-CCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhccCCccccccccccCCeeEEE--eecCEEEECCCC----EEEECCCchhcccCCC-CCHHHHHHHHHHHHh
Confidence 466778899999999987665556778887 788999999999 9999999999999999 899999999999999
Q ss_pred ccc-ccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEE
Q 002941 432 FGH-VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVL 510 (863)
Q Consensus 432 ~~~-~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II 510 (863)
+.+ ..+..++++...+|+++|++++|.+ .++|+|+|||+|||+.|+|++ +.|+..+|.+ + +.+||
T Consensus 82 ~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~ggseA~~~al~~~-~~~~~~~g~~-~-----------~~~vi 147 (459)
T 4a6r_A 82 LPFYNTFFKTTHPAVVELSSLLAEVTPAG-FDRVFYTNSGSESVDTMIRMV-RRYWDVQGKP-E-----------KKTLI 147 (459)
T ss_dssp CSCCCTTSSSCCHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHTTCT-T-----------CCEEE
T ss_pred ccccccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCchHHHHHHHHHHH-HHHHHhcCCC-C-----------CCEEE
Confidence 773 3344578899999999999998754 689999999999999999999 5677666653 3 37899
Q ss_pred EecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcc
Q 002941 511 ALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590 (863)
Q Consensus 511 ~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (863)
+++++|||.+.+++++++.+.|+..+ . +. ..++.+++.|.+|++.. +
T Consensus 148 ~~~~~yhg~~~~~~~~~~~~~~~~~~--------~----~~----~~~~~~~~~p~~~~~~~--------------~--- 194 (459)
T 4a6r_A 148 GRWNGYHGSTIGGASLGGMKYMHEQG--------D----LP----IPGMAHIEQPWWYKHGK--------------D--- 194 (459)
T ss_dssp EETTCCCCSSHHHHHHSCCTTTC-----------C----CS----CSSEEEECCCCHHHHCT--------------T---
T ss_pred EECCCcCCccHHHHhhcCChhhcccc--------C----CC----CCCCEEeCCCccccCCc--------------c---
Confidence 99999999999999999877665321 1 11 13556778776653210 0
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC
Q 002941 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670 (863)
Q Consensus 591 ~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG 670 (863)
.|.+.....+.+.|++.+.+ .+++++++||+||+ ++++|+++++++|+++|+++|++||++||+||||+||||+|
T Consensus 195 ~d~~~~~~~~~~~le~~i~~----~~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G 269 (459)
T 4a6r_A 195 MTPDEFGVVAARWLEEKILE----IGADKVAAFVGEPI-QGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTG 269 (459)
T ss_dssp CCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred cCHHHHHHHHHHHHHHHHHH----cCCCCEEEEEECCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc
Confidence 12123333445677777753 23568999999997 99999999999999999999999999999999999999999
Q ss_pred CcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHH
Q 002941 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNH 750 (863)
Q Consensus 671 ~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~ 750 (863)
++|+++++++.||++||||+|+||++|+|++++++++++.+... ..+.+++||++||++|+|++++|+.++++++.+
T Consensus 270 ~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~---~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 346 (459)
T 4a6r_A 270 EWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAG---GDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQ 346 (459)
T ss_dssp SSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHH---CTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHH
T ss_pred ccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcC---CCcccCCCCCCCHHHHHHHHHHHHHHhcchHHH
Confidence 99999999999999999999999989999999999999998631 124688999999999999999999987777888
Q ss_pred hHH-HHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCC--chHHHHHHHHHHHHCCcEEEecCCEE
Q 002941 751 NII-PERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGY--GSLYAASLLKKLREDGVYMRPLGNVI 826 (863)
Q Consensus 751 ~l~-~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~--~~~~~~~l~~~l~e~GV~~~p~g~~l 826 (863)
+++ ++++++++.| .+.+.++|.+..+++.|+|+++++.++. +..++ ....+..+++.|+++||++++.|+.+
T Consensus 347 ~~~~~~~~~~~~~l----~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g~~i 422 (459)
T 4a6r_A 347 RVKDDIGPYMQKRW----RETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACGDHI 422 (459)
T ss_dssp HHHHTHHHHHHHHH----HHHHTTCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEETTEE
T ss_pred HHHHHHHHHHHHHH----HHHHhcCCCeEEEEEEEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCCCEE
Confidence 888 7777777654 3445678899999999999999997543 11221 23356788999999999999999999
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 827 YLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 827 r~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
||+||+++|++++++++++|+++++++.+
T Consensus 423 Ri~~~~~~t~e~i~~~l~~l~~~l~~~~~ 451 (459)
T 4a6r_A 423 VSAPPLVMTRAEVDEMLAVAERCLEEFEQ 451 (459)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988754
No 8
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=100.00 E-value=5e-61 Score=554.00 Aligned_cols=441 Identities=20% Similarity=0.272 Sum_probs=357.8
Q ss_pred ChhhhhcccccccCCCCCCCCCCC--eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHH
Q 002941 352 DMPKRAGELFWWPFTQHKLVPEEA--VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTA 429 (863)
Q Consensus 352 ~~~~~~~~~l~~p~~~~~~~~~~~--~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~ 429 (863)
++.+.+.+++||||+++..+.... |.++++ |+|+++||.||+ +|||+++++|++++|| +||+|++|+.+|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~G~~~~d~~G~----~~lD~~~~~~~~~lG~-~~p~v~~A~~~~~ 80 (460)
T 3gju_A 8 ELNAWDRDHFFHPSTHMGTHARGESPTRIMAG--GEGVTVWDNNGR----KSIDAFAGLYCVNVGY-GRQKIADAIATQA 80 (460)
T ss_dssp CHHHHHHHHCCCTTSCHHHHHHTCSCCCCEEE--EEBTEEEETTCC----EEEETTHHHHTCTTCB-CCHHHHHHHHHHH
T ss_pred HHHHhhhcccccCccccccccccCCCceEEEE--eeccEEEECCCC----EEEECCcchhhccCCC-CCHHHHHHHHHHH
Confidence 566778889999999865432222 367776 788999999999 9999999999999999 8999999999999
Q ss_pred Hhcccc-cCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccE
Q 002941 430 ARFGHV-MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELK 508 (863)
Q Consensus 430 ~~~~~~-~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~ 508 (863)
+++.+. ....++++...+|+++|+++++.+ .++|+|+|||+|||+.|+|++ +.|+..+|++ | +.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~gGseA~~~al~~~-~~~~~~~g~~-~-----------~~~ 146 (460)
T 3gju_A 81 KNLAYYHAYVGHGTEASITLAKMIIDRAPKG-MSRVYFGLSGSDANETNIKLI-WYYNNVLGRP-E-----------KKK 146 (460)
T ss_dssp HHHSCCCCCTTCCCHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTCT-T-----------CCE
T ss_pred HhccccccccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCchHHHHHHHHHHH-HHHHHhcCCC-C-----------CCE
Confidence 997643 334577899999999999998754 689999999999999999999 5677776653 3 378
Q ss_pred EEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhh
Q 002941 509 VLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFY 588 (863)
Q Consensus 509 II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~ 588 (863)
||+++++|||.+.+++++++.+.|+..+ . +. ..++.+++.|.+|++.+.
T Consensus 147 vi~~~~~yhg~~~~~~~~~~~~~~~~~~--------~----~~----~~~~~~~~~p~~~~~~~~--------------- 195 (460)
T 3gju_A 147 IISRWRGYHGSGVMTGSLTGLDLFHNAF--------D----LP----RAPVLHTEAPYYFRRTDR--------------- 195 (460)
T ss_dssp EEEETTCCCCSSHHHHHHCCCGGGTTTT--------T----CS----CTTEEEECCCCGGGCSCT---------------
T ss_pred EEEECCCcCCCCHHHhhccCCccccccc--------C----CC----CCCCEEeCCCccccCCcc---------------
Confidence 9999999999999999998866554321 1 11 135567777766532110
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccc
Q 002941 589 EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668 (863)
Q Consensus 589 ~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGR 668 (863)
..+.+++...+.+.|++.+++ .+++++++||+||+ ++++|+++++++|+++|+++|++||++||+||||+||||
T Consensus 196 -g~~~~~~~~~~~~~le~~i~~----~~~~~~aaii~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr 269 (460)
T 3gju_A 196 -SMSEEQFSQHCADKLEEMILA----EGPETIAAFIGEPI-LGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGR 269 (460)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred -ccChhHHHHHHHHHHHHHHHh----cCCCCEEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 011122333445777777753 24568999999997 999999999999999999999999999999999999999
Q ss_pred cCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcC-CccceeecccCCCccHHHHHHHHHHHHHhcChh
Q 002941 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ 747 (863)
Q Consensus 669 tG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~-~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~ 747 (863)
+|++|+++++|+.||++||||+|+|||+|+|++++++++++.+... .+...+.|++||++||++|+|++++|+.+++++
T Consensus 270 ~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 349 (460)
T 3gju_A 270 LGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMD 349 (460)
T ss_dssp TSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTT
T ss_pred ccccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999988999999999999998521 001235688999999999999999999997777
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCC--chHHHHHHHHHHHHCCcEEEecC-
Q 002941 748 TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGY--GSLYAASLLKKLREDGVYMRPLG- 823 (863)
Q Consensus 748 l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~--~~~~~~~l~~~l~e~GV~~~p~g- 823 (863)
+.++++++++++++.+ .+.+.++|.+..+++.|+|+++++.++. ....+ ....+..+.+.|+++||++++.+
T Consensus 350 ~~~~~~~~~~~~~~~l----~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~ 425 (460)
T 3gju_A 350 LVTNAGETGAYFRAEL----AKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQ 425 (460)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECSS
T ss_pred HHHHHHHHHHHHHHHH----HHHHhcCCCeEEEeeeeEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCCC
Confidence 8888888888877754 4566788999999999999999998543 11222 12346788999999999999976
Q ss_pred -CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 824 -NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 824 -~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+.+||+||+++|+|++++++++|+++++++.
T Consensus 426 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 457 (460)
T 3gju_A 426 GDILGFAPPLCLTREQADIVVSKTADAVKSVF 457 (460)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988654
No 9
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=100.00 E-value=5.4e-60 Score=545.74 Aligned_cols=419 Identities=27% Similarity=0.378 Sum_probs=341.5
Q ss_pred hhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEc-CCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHh
Q 002941 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQD-QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~-dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~ 431 (863)
+.+++.+++||||+++... ...|.++++ |+|+|+||. ||++ .+|||+++|+|++++|| +||+|++|+.+|+++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~G~~l~d~~dG~~--~~ylD~~s~~~~~~lGh-~~p~v~~A~~~~~~~ 106 (457)
T 3tfu_A 33 IIAVDGAHLWHPYSSIGRE-AVSPVVAVA--AHGAWLTLIRDGQP--IEVLDAMSSWWTAIHGH-GHPALDQALTTQLRV 106 (457)
T ss_dssp HHHHHHHHBCCTTCCSSCC-SSCCEEEEE--EEBTEEEEEETTEE--EEEEETTHHHHTCTTCB-TCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCccccccccc-CCCCceEEe--eecCEEEEccCCCe--eEEEECCCcHhhhccCC-CCHHHHHHHHHHHHh
Confidence 4456678899999986211 245778887 788999999 9872 16999999999999999 899999999999999
Q ss_pred cccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEE
Q 002941 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (863)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~ 511 (863)
+.+.++..++++...+|+++|++++|.+ .++|+|+|||+|||+.|+|++ +.|+..+|.+ || .+||+
T Consensus 107 ~~~~~~~~~~~~~~~~L~e~la~~~~~~-~~~v~~~~sGseA~~~Alk~a-~~~~~~~g~~-g~-----------~~ii~ 172 (457)
T 3tfu_A 107 MNHVMFGGLTHEPAARLAKLLVDITPAG-LDTVFFSDSGSVSVEVAAKMA-LQYWRGRGLP-GK-----------RRLMT 172 (457)
T ss_dssp CSCCCSSSEECHHHHHHHHHHHHHSSTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTCT-TC-----------CEEEE
T ss_pred ccCccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCcHHHHHHHHHHHH-HHHHHhcCCC-CC-----------ceEEE
Confidence 8877655678999999999999999754 689999999999999999999 5677666652 43 78999
Q ss_pred ecCCCccCccccceecC-CCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcc
Q 002941 512 LKGSYHGDTLGAMEAQA-PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590 (863)
Q Consensus 512 ~~~sYHG~t~gals~t~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (863)
++++|||.+.+++++++ ...|+..+ .+. ..++.+++.|... +
T Consensus 173 ~~~~yhg~~~~~~~~~~~~~~~~~~~--------~~~--------~~~~~~~~~p~~~------------------~--- 215 (457)
T 3tfu_A 173 WRGGYHGDTFLAMSICDPHGGMHSLW--------TDV--------LAAQVFAPQVPRD------------------Y--- 215 (457)
T ss_dssp ETTCCCCSSHHHHTTSCCC--------------------------CCCCEEECCCCSS------------------C---
T ss_pred EcCCcCCccHHhhcccCCcccccccc--------cCC--------CCCceEecCCCcc------------------c---
Confidence 99999999999999865 33333211 111 0223344444211 0
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc-ccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccccccc
Q 002941 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP-VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL 669 (863)
Q Consensus 591 ~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEP-Viqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRt 669 (863)
+ ....+.+++.+++ +++++++||+|| + ||++|+++++++|+++|+++|++||++||+|||++||||+
T Consensus 216 -~-----~~d~~~le~~l~~-----~~~~~aavi~ep~~-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~ 283 (457)
T 3tfu_A 216 -D-----PAYSAAFEAQLAQ-----HAGELAAVVVEPVV-QGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRT 283 (457)
T ss_dssp -C-----HHHHHHHHHHHHH-----HGGGEEEEEECSSE-ECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred -C-----HHHHHHHHHHHHh-----CCCCEEEEEEeCCC-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccc
Confidence 0 0113567777753 346899999999 6 9999999999999999999999999999999999999999
Q ss_pred CCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhH
Q 002941 670 GVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTN 749 (863)
Q Consensus 670 G~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~ 749 (863)
|++|+++++|+.||++||||+|+|||+|+|++++++++++.+... +.+.+.|++||++||++|++++++|++++++++.
T Consensus 284 G~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~-~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~~~ 362 (457)
T 3tfu_A 284 GALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAG-AAGALMHGPTFMANPLACAVSVASVELLLGQDWR 362 (457)
T ss_dssp SSSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHS-SSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred cchhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhcc-CCCceeEecCCCcCHHHHHHHHHHHHHHhhhHHH
Confidence 999999999999999999999999988999999999999998521 1134578999999999999999999999887888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEe
Q 002941 750 HNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLM 829 (863)
Q Consensus 750 ~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ 829 (863)
++++++++++++.| .+ +.+++.+.++++.|+|+++++.++. .+.++.+.|+++||+++|.++.+|++
T Consensus 363 ~~~~~~~~~l~~~L----~~-l~~~~~v~~vr~~G~~~~i~l~~~~--------~~~~~~~~l~~~Gv~v~~~~~~lRi~ 429 (457)
T 3tfu_A 363 TRITELAAGLTAGL----DT-ARALPAVTDVRVCGAIGVIECDRPV--------DLAVATPAALDRGVWLRPFRNLVYAM 429 (457)
T ss_dssp HHHHHHHHHHHHHH----GG-GGGSTTEEEEEECSSCEEEEESSCC--------CHHHHHHHHHHTTEECCCBTTEEEEC
T ss_pred HHHHHHHHHHHHHH----HH-HhcCCCeeeeecCCeEEEEEECCcc--------cHHHHHHHHHHCCeEEEecCCEEEEE
Confidence 88888877777654 22 3467889999999999999997542 15678999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 830 CGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 830 ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
||+++|+|++++++++|+++++++.
T Consensus 430 p~~~~t~eei~~~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 430 PPYICTPAEITQITSAMVEVARLVG 454 (457)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999987653
No 10
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=100.00 E-value=7.3e-59 Score=533.91 Aligned_cols=436 Identities=28% Similarity=0.420 Sum_probs=333.4
Q ss_pred ChhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHh
Q 002941 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (863)
Q Consensus 352 ~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~ 431 (863)
++.+.+.+++||||+++..+ ...|.++++ |+|+++||.||+ +|||+++++|++++|| +||+|++|+.+|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~--g~G~~v~d~~g~----~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~ 75 (448)
T 3dod_A 4 DLIEKSKKHLWLPFTQMKDY-DENPLIIES--GTGIKVKDINGK----EYYDGFSSVWLNVHGH-RKKELDDAIKKQLGK 75 (448)
T ss_dssp HHHHHHHHHBCCTTCCHHHH-HHSCCEEEE--EEBTEEEETTSC----EEEETTHHHHTCSSCB-SCHHHHHHHHHHHTT
T ss_pred HHHHhhhhcccccccccccc-cCCCceEEE--eeeCEEEECCCC----EEEECCcchhhccCCC-CCHHHHHHHHHHHHh
Confidence 35567778999999986444 224667776 788999999999 9999999999999999 799999999999999
Q ss_pred cccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEE
Q 002941 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (863)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~ 511 (863)
+.+.+...+.++...+|+++|++++|.+ .++|+|+|||+|||+.|+|++ +.++...|.+ + +.+||+
T Consensus 76 ~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~al~~~-~~~~~~~G~~-~-----------~~~vi~ 141 (448)
T 3dod_A 76 IAHSTLLGMTNVPATQLAETLIDISPKK-LTRVFYSDSGAEAMEIALKMA-FQYWKNIGKP-E-----------KQKFIA 141 (448)
T ss_dssp CSCCCCSSSEEHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTCT-T-----------CCEEEE
T ss_pred ccCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCchHHHHHHHHHHH-HHHHHhhCCC-C-----------CCEEEE
Confidence 8775545677899999999999998754 689999999999999999999 4565555532 1 378999
Q ss_pred ecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhccc
Q 002941 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (863)
Q Consensus 512 ~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (863)
++++|||.+.+++++++...++..+ .+. ..++.+++.|++|+.. ..
T Consensus 142 ~~~~yhg~~~~~~~~~~~~~~~~~~--------~~~--------~~~~~~~~~~~~~~~~------------------~~ 187 (448)
T 3dod_A 142 MKNGYHGDTIGAVSVGSIELFHHVY--------GPL--------MFESYKAPIPYVYRSE------------------SG 187 (448)
T ss_dssp EC---------------------------------------------CEEECCCCCTTSS------------------SC
T ss_pred ECCCCCCccHHHHHhcCCccccccc--------cCC--------CCCceEeCCCccccCC------------------cc
Confidence 9999999999999998866554321 111 1234566777655210 00
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc-cCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC
Q 002941 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH-AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670 (863)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViq-g~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG 670 (863)
+...+.....+.||+.++. +++++++||+||+ + +++|+++++++|+++|+++|++||++||+||||+||||+|
T Consensus 188 ~~~~~~~~d~~~le~~l~~-----~~~~~a~vi~ep~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g 261 (448)
T 3dod_A 188 DPDECRDQCLRELAQLLEE-----HHEEIAALSIESM-VQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTG 261 (448)
T ss_dssp CHHHHHHHHHHHHHHHHHH-----HGGGEEEEEEESS-EESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred chhhhhHHHHHHHHHHHHh-----CCCCEEEEEEeCc-ccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCccc
Confidence 1111222335677777752 3468999999998 7 9999999999999999999999999999999999999999
Q ss_pred CcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcC-CccceeecccCCCccHHHHHHHHHHHHHhcChhhH
Q 002941 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTN 749 (863)
Q Consensus 671 ~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~-~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~ 749 (863)
.+|+++++|+.||++||||++++||+|+|++++++++++.+... .....+.+++||++||++|+|++++|+.++++++.
T Consensus 262 ~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 341 (448)
T 3dod_A 262 KMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIV 341 (448)
T ss_dssp SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred chhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccHH
Confidence 99999999999999999999999977999999999999988641 01123568899999999999999999998777788
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCchH--HHHHHHHHHHHCCcEEEecCCEE
Q 002941 750 HNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYGSL--YAASLLKKLREDGVYMRPLGNVI 826 (863)
Q Consensus 750 ~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~~~--~~~~l~~~l~e~GV~~~p~g~~l 826 (863)
++++++++++++.+ .+ +..+|.+..+++.|+|+++++.++. ....+... .+..+++.|+++||+++|.++.+
T Consensus 342 ~~~~~~~~~~~~~l----~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~i 416 (448)
T 3dod_A 342 EQVAEKSKKLHFLL----QD-LHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVI 416 (448)
T ss_dssp HHHHHHHHHHHHHH----HH-HTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEETTEE
T ss_pred HHHHHHHHHHHHHH----HH-HhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEeccCCEE
Confidence 88888888877754 44 5678889999999999999997642 11222111 24678999999999999999999
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 827 YLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 827 r~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
|++||+++|+++|++++++|+++++++.
T Consensus 417 Ri~~~~~~t~e~i~~~l~~l~~~l~~~~ 444 (448)
T 3dod_A 417 AFLPPLASTAEELSEMVAIMKQAIHEVT 444 (448)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998764
No 11
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=100.00 E-value=1.2e-57 Score=523.77 Aligned_cols=430 Identities=22% Similarity=0.296 Sum_probs=344.5
Q ss_pred Chhhhhcccccc---cCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHH
Q 002941 352 DMPKRAGELFWW---PFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYT 428 (863)
Q Consensus 352 ~~~~~~~~~l~~---p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q 428 (863)
++.+.+.+++|| ||++ ..|.++++ |+|+++||.||+ +|||+++++|++++|| +||+|++|+.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~------~~p~~~~~--~~G~~v~d~~g~----~~lD~~~~~~~~~lG~-~~p~v~~A~~~~ 77 (452)
T 3n5m_A 11 ELLAKDEQYVWHGMRPFSP------NSTTVGAK--AEGCWVEDIQGK----RYLDGMSGLWCVNSGY-GRKELAEAAYKQ 77 (452)
T ss_dssp HHHHHHHHHBCCTTSCSCG------GGCCEEEE--EEBTEEEETTCC----EEEETTHHHHTCTTCB-CCHHHHHHHHHH
T ss_pred HHHHHhhhhcccccccccc------CCCceEEE--eeeCEEEECCCC----EEEECCcchhhccCCC-CCHHHHHHHHHH
Confidence 456677788998 4432 34667777 788999999999 9999999999999999 899999999999
Q ss_pred HHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccE
Q 002941 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELK 508 (863)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~ 508 (863)
++++.+ ....+.++...+|+++|++.+|.+ .+ |+|+|||+|||+.|+|++ +.|+..+|++ + +.+
T Consensus 78 ~~~~~~-~~~~~~~~~~~~la~~l~~~~~~~-~~-v~~~~ggseA~~~al~~~-~~~~~~~g~~-~-----------~~~ 141 (452)
T 3n5m_A 78 LQTLSY-FPMSQSHEPAIKLAEKLNEWLGGE-YV-IFFSNSGSEANETAFKIA-RQYYAQKGEP-H-----------RYK 141 (452)
T ss_dssp HTTCCC-CCTTSEEHHHHHHHHHHHHHHTSC-EE-EEEESSHHHHHHHHHHHH-HHHHHTTTCT-T-----------CCE
T ss_pred HHhcCC-cccccCCHHHHHHHHHHHHhCCCC-ce-EEEeCchHHHHHHHHHHH-HHHHHhcCCC-C-----------CCE
Confidence 999877 444577899999999999998854 45 999999999999999999 4565555432 2 378
Q ss_pred EEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhh
Q 002941 509 VLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFY 588 (863)
Q Consensus 509 II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~ 588 (863)
||+++++|||.+.+++++++...++..+ .+. ..++.+++.|.+++. +++
T Consensus 142 vi~~~~~yhg~~~~~~~~~~~~~~~~~~--------~~~--------~~~~~~~~~~~~~~~---------------~~~ 190 (452)
T 3n5m_A 142 FMSRYRGYHGNTMATMAATGQAQRRYQY--------EPF--------ASGFLHVTPPDCYRM---------------PGI 190 (452)
T ss_dssp EEEETTCCCCSSHHHHHSCCCGGGTTTT--------CCC--------CSCEEEECCCCTTTS---------------TTT
T ss_pred EEEECCCcCCCCHHHHhcCCchhhcccc--------CCC--------CCCCeEeCCCccccC---------------ccC
Confidence 9999999999999999998866544211 110 123455666654421 111
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccc
Q 002941 589 EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668 (863)
Q Consensus 589 ~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGR 668 (863)
...+ .+...+.+.|++.+++ .+++++++||+||++|| +|+++|+++|+++|+++|++||++||+||||+||||
T Consensus 191 ~~~~--~~~~~~~~~le~~l~~----~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~ 263 (452)
T 3n5m_A 191 EREN--IYDVECVKEVDRVMTW----ELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGR 263 (452)
T ss_dssp TTSC--GGGCHHHHHHHHHHHH----HCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred Cchh--hHHHHHHHHHHHHHHh----cCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCc
Confidence 1111 1222335677777752 24568999999996479 999999999999999999999999999999999999
Q ss_pred cCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhh
Q 002941 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQT 748 (863)
Q Consensus 669 tG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l 748 (863)
+|.+|+++++++.||++||||++++||+|+|++++++++++.+......+.+.|++||++||++|+|++++|+.++++++
T Consensus 264 ~g~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 343 (452)
T 3n5m_A 264 TGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENL 343 (452)
T ss_dssp TSSSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTH
T ss_pred ccccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhccH
Confidence 99999999999999999999999999999999999999999986411123467899999999999999999999877777
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCchHHHHHHHHHHHHCCcEEEecC----
Q 002941 749 NHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYGSLYAASLLKKLREDGVYMRPLG---- 823 (863)
Q Consensus 749 ~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~~~~~~~l~~~l~e~GV~~~p~g---- 823 (863)
.++++++++++++.| .+++.++|.+..+++.|+|+++++.++. ....+.......+++.|+++||+++|.+
T Consensus 344 ~~~~~~~~~~l~~~L----~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~ 419 (452)
T 3n5m_A 344 IERSAQMGSLLLEQL----KEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTA 419 (452)
T ss_dssp HHHHHHHHHHHHHHH----HHHHTTCTTEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSST
T ss_pred HHHHHHHHHHHHHHH----HHHHhcCCCeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccC
Confidence 888888777777644 5566788999999999999999996542 1222223445678999999999999865
Q ss_pred ---CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 824 ---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 824 ---~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
+.+||.||+++|+++|++++++|++++++
T Consensus 420 ~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 420 GYNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp TCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999988753
No 12
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=100.00 E-value=8.4e-57 Score=517.82 Aligned_cols=403 Identities=21% Similarity=0.230 Sum_probs=328.3
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+++++|++++|| +||+|++|+.+|++++.+..+..+.++...+|+++|++.
T Consensus 44 p~~~~~--g~G~~v~d~~g~----~ylD~~~~~~~~~lGh-~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~ 116 (451)
T 3oks_A 44 PVYAVR--AGGGIVEDVDGN----RLIDLGSGIAVTTVGN-SAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRL 116 (451)
T ss_dssp SSCEEE--EETTEEEETTSC----EEEESSHHHHTCTTCT-TCHHHHHHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHHH
T ss_pred CceEEE--eecCEEEECCCC----EEEEcCCCccccccCC-CCHHHHHHHHHHHHhcccccCCccCCHHHHHHHHHHHHh
Confidence 456666 788999999999 9999999999999999 899999999999999877655567889999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~~ 534 (863)
+|....++|+|+|||+|||+.|+|+| +.| +|| .+||+++++|||++.+++++++.. .|+.
T Consensus 117 ~~~~~~~~v~~~~sGseA~~~Alk~a-~~~-------~g~-----------~~ii~~~~~yhG~~~~~~~~~~~~~~~~~ 177 (451)
T 3oks_A 117 TPVRGDKRSALFNSGSEAVENAVKIA-RSH-------THK-----------PAVVAFDHAYHGRTNLTMALTAKVMPYKD 177 (451)
T ss_dssp SSCCSSEEEEEESSHHHHHHHHHHHH-HHH-------HCC-----------CEEEEETTCCCCSSHHHHHHCCCCTTTTT
T ss_pred CCcCCCCEEEEeCcHHHHHHHHHHHH-HHh-------cCC-----------CeEEEEcCCcCCccHHHHHhcCCCccccc
Confidence 87433479999999999999999999 455 353 789999999999999999998853 4432
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
. +.+. ..++.++++|.+++... .+ .+.+.+.....+.+++.|++.
T Consensus 178 ~--------~~~~--------~~~~~~~~~~~~~~~~~--------------~g--~~~~~~~~~~~~~~~~~l~~~--- 222 (451)
T 3oks_A 178 G--------FGPF--------APEIYRAPLSYPFRDAE--------------FG--KELATDGELAAKRAITVIDKQ--- 222 (451)
T ss_dssp T--------CCSC--------CSSEEEECCCCHHHHGG--------------GC--TTTTTCHHHHHHHHHHHHHHH---
T ss_pred C--------CCCC--------CCCcEEeCCCccccccc--------------cc--cccchhhHHHHHHHHHHHHhh---
Confidence 1 1111 13566777776553100 00 000011122234445555431
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
..++++++||+||+ ++++|+++++++|+++|+++|++||++||+||||+||||+|.+++++++|+.||++||||++++|
T Consensus 223 ~~~~~~aavi~ep~-~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G 301 (451)
T 3oks_A 223 IGADNLAAVVIEPI-QGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGG 301 (451)
T ss_dssp TCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTT
T ss_pred cCCCCEEEEEEcCC-cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehhhhhCC
Confidence 23578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+.. ..+++||++||++|++++++|+.++++++.++++++++++++.| .+.+.++
T Consensus 302 -~~iG~v~~~~~~~~~~~~------~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L----~~~~~~~ 370 (451)
T 3oks_A 302 -LPLSAVTGRAEIMDSPHV------SGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRL----GRLQAED 370 (451)
T ss_dssp -SSCEEEEEEHHHHTCSCT------TSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH----HHHHHHC
T ss_pred -cceEEEEECHHHHhhhcC------CCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH----HHHHhhC
Confidence 899999999999998764 24889999999999999999999877777888888777777654 4556778
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
|.+..+++.|+|+++++.+... ..+....+..+.+.|+++||++.|.+ +.+||.||+++|+++|++++++|+++++
T Consensus 371 ~~~~~~~~~G~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 449 (451)
T 3oks_A 371 DRIGDVRGRGAMIAMELVKAGT-TEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLR 449 (451)
T ss_dssp TTEEEEEEETTEEEEEEBSTTS-CCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeeEEEEEEEecCcc-CCCCHHHHHHHHHHHHhCCcEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999975221 11233457789999999999999864 8999999999999999999999999875
Q ss_pred H
Q 002941 852 E 852 (863)
Q Consensus 852 ~ 852 (863)
+
T Consensus 450 ~ 450 (451)
T 3oks_A 450 G 450 (451)
T ss_dssp C
T ss_pred h
Confidence 3
No 13
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=1.1e-56 Score=517.15 Aligned_cols=399 Identities=23% Similarity=0.252 Sum_probs=325.9
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|+++++ |+|+++||.||+ +|||+++++|++++|| +||+|++|+.+|++++.+..+..+.++...+|+++|++.
T Consensus 47 p~~~~~--~~G~~v~d~~G~----~ylD~~~~~~~~~lGh-~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~ 119 (453)
T 4ffc_A 47 PVYAVD--ADGGVIVDADGN----SFIDLGAGIAVTTVGA-SHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNAL 119 (453)
T ss_dssp SSCEEE--EETTEEEETTSC----EEEESSHHHHTCTTCT-TCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHH
T ss_pred CceEEe--eecCEEEeCCCC----EEEEcCCCcccCcCCC-CCHHHHHHHHHHHHhccccccCcCCCHHHHHHHHHHHHh
Confidence 456666 788999999999 9999999999999999 899999999999999877655567889999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~~ 534 (863)
+|....++|+|+|||+|||+.|||+| +.| +|| .+||+++++|||++.+++++++.. .|+.
T Consensus 120 ~~~~~~~~v~~~~sGseA~~~alk~a-~~~-------~g~-----------~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 180 (453)
T 4ffc_A 120 TPGDHDKRTALFNSGAEAVENAIKVA-RLA-------TGR-----------PAVVAFDNAYHGRTNLTMALTAKSMPYKS 180 (453)
T ss_dssp SSCSSCEEEEEESSHHHHHHHHHHHH-HHH-------HCC-----------CEEEEETTCCCCSSHHHHHHCCCCTTTTT
T ss_pred CCCCCCcEEEEeCcHHHHHHHHHHHH-HHh-------cCC-----------CEEEEEcCccCCcchHHHhhcCCCccccc
Confidence 87432479999999999999999999 455 343 789999999999999999998754 4432
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
. +.+. ..++.++++|.+++. .++ .+..+....+.+.+++.+
T Consensus 181 ~--------~~~~--------~~~~~~~~~~~~~~~---------------~~g--~~~~~~~~~~~~~l~~~i------ 221 (453)
T 4ffc_A 181 Q--------FGPF--------APEVYRMPASYPLRD---------------EPG--LTGEEAARRAISRIETQI------ 221 (453)
T ss_dssp T--------SCSC--------CSSEEEECCCCTTTS---------------CTT--CCHHHHHHHHHHHHHHHT------
T ss_pred C--------CCCC--------CCCcEEeCCCccccC---------------ccc--cchHHHHHHHHHHHHHhc------
Confidence 1 1111 134566777754420 011 010011111223344333
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.++++++||+||+ ++++|+++++++|+++|+++|++||++||+||||+||||+|.+++++++|+.||++||||++++|
T Consensus 222 -~~~~~aavi~ep~-~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~~G 299 (453)
T 4ffc_A 222 -GAQSLAAIIIEPI-QGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAGG 299 (453)
T ss_dssp -CGGGEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTT
T ss_pred -CCCCEEEEEEcCC-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhhhhcCC
Confidence 3568999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+.. ..+++||++||++|+|++++|+.++++++.++++++++++++.+ .+.+.++
T Consensus 300 -~~~G~~~~~~~i~~~~~~------~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l----~~~~~~~ 368 (453)
T 4ffc_A 300 -MPLSAVTGRAELMDAVYA------GGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRL----SALAEEV 368 (453)
T ss_dssp -SSCEEEEEEHHHHTTSCT------TSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH----HHHHHHC
T ss_pred -cCeEEEEECHHHHhhhcc------cCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----HHHHhhC
Confidence 899999999999998764 24789999999999999999999877777888888777777644 5556788
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
|.+..+++.|+|+++++.+..+. ......+..+.+.|+++||++.|.+ +.+|+.||+++|+++|++++++|+++++
T Consensus 369 ~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 447 (453)
T 4ffc_A 369 DIIGEVRGRGAMLAIEIVKPGTL-EPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIR 447 (453)
T ss_dssp SSEEEEEEETTEEEEEEBCTTSC-CBCHHHHHHHHHHHHHTTEECCEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeeceEEEEEEecCccc-CCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999752211 1233457789999999999999864 8999999999999999999999999987
Q ss_pred HH
Q 002941 852 EF 853 (863)
Q Consensus 852 ~l 853 (863)
++
T Consensus 448 ~~ 449 (453)
T 4ffc_A 448 AK 449 (453)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 14
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=100.00 E-value=5e-53 Score=481.75 Aligned_cols=416 Identities=22% Similarity=0.255 Sum_probs=315.2
Q ss_pred ccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCC
Q 002941 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP 438 (863)
Q Consensus 359 ~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~ 438 (863)
+++||||.. .+.++++ |+|+++||.||+ +|||+++++|++++|| +||+|++|+.+|++++.+....
T Consensus 2 ~~~~~~~~~-------~~~~~~~--~~G~~~~d~~g~----~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~~ 67 (430)
T 3i4j_A 2 SNVFYRSSK-------PYPVAVR--GEGVFLYDDAGR----RYLDGSSGALVANIGH-GRAEVGERMAAQAARLPFVHGS 67 (430)
T ss_dssp -CBCCSSSS-------CCCEEEE--EEBTEEEETTSC----EEEETTHHHHTCTTCB-CCHHHHHHHHHHHHHCCCCCTT
T ss_pred CccccCCCC-------CCceEEe--eecCEEEECCCC----EEEECCCchhccccCC-CCHHHHHHHHHHHHhccccccc
Confidence 478999822 3557776 788999999999 9999999999999999 7999999999999998766544
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|++.++.+ .++|+|+|||+||++.|+++++ .++..+|.+ + +.+||+++.+|||
T Consensus 68 ~~~~~~~~~l~~~la~~~~~~-~~~v~~~~gg~ea~~~al~~~~-~~~~~~g~~-~-----------~~~vi~~~~~yhg 133 (430)
T 3i4j_A 68 QFSSDVLEEYAGRLARFVGLP-TFRFWAVSGGSEATESAVKLAR-QYHVERGEP-G-----------RFKVITRVPSYHG 133 (430)
T ss_dssp TCEEHHHHHHHHHHHHHTTCT-TCEEEEESSHHHHHHHHHHHHH-HHHHHTTCT-T-----------CCEEEEETTC---
T ss_pred ccCCHHHHHHHHHHHHhCCCC-CCEEEEeCcHHHHHHHHHHHHH-HHHHhcCCC-C-----------CcEEEEEeCCcCC
Confidence 677889999999999998754 5799999999999999999994 566666642 3 2789999999999
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.+.+++++++...++..+ .+.. ++ .++.++++|+.++. ..
T Consensus 134 ~~~~~~~~~~~~~~~~~~--------~~~~-~~-----~~~~~~~~~~~~~~--------------------------~~ 173 (430)
T 3i4j_A 134 ASLGSLAASGMGARRELY--------TPLM-RP-----EAWPKLPKPDPARN--------------------------GA 173 (430)
T ss_dssp -------------------------------CG-----GGSCEECCCCTTSC--------------------------HH
T ss_pred CCcccccccCcccccccc--------CCcC-CC-----CCceEcCCCcccch--------------------------hh
Confidence 999999888755443211 1110 00 03344555543310 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc-CCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhh
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA-AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg-~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~ 677 (863)
...+.+++.+++ .+++++++|++||+ +| ++|+++++++|+++|+++|++||++||+||||+||||+|.++++++
T Consensus 174 ~~~~~le~~l~~----~~~~~~~~vi~~p~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~ 248 (430)
T 3i4j_A 174 EDAEGLRALLER----EGPETVAAFMAEPV-VGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSR 248 (430)
T ss_dssp HHHTHHHHHHHH----HCGGGEEEEEECSS-CCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGG
T ss_pred HHHHHHHHHHHh----cCCCCEEEEEEcCc-ccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhh
Confidence 123556677753 23468999999998 89 9999999999999999999999999999999999999999999999
Q ss_pred c-CCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHH
Q 002941 678 L-GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (863)
Q Consensus 678 ~-gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~ 756 (863)
+ ++.||++||||++++||+|+|++++++++++.+.... +.+.+++||++||++|+|++++|+.++++++.++++++.
T Consensus 249 ~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~--~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~ 326 (430)
T 3i4j_A 249 WSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGS--GAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERG 326 (430)
T ss_dssp TTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTT--CBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccC--CcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 9 9999999999999999999999999999999987532 235688999999999999999999987777778888877
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCc-hHHHHHHHHHHHHCCcEEEec--------CCEEE
Q 002941 757 RILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYG-SLYAASLLKKLREDGVYMRPL--------GNVIY 827 (863)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~-~~~~~~l~~~l~e~GV~~~p~--------g~~lr 827 (863)
+++++.+ .+...++|.+..+++.|+|+.+++.+......+. ...+.++.+.|+++||+++|. ++.+|
T Consensus 327 ~~~~~~l----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iR 402 (430)
T 3i4j_A 327 AQLLAGL----QALQARFPQMMQVRGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLL 402 (430)
T ss_dssp HHHHHHH----HHHHHHCTTEEEEEEETTEEEEEEC------------CHHHHHHHHHHTTEECC-----------CEEE
T ss_pred HHHHHHH----HHHHHhCCCeEEEEEEEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEE
Confidence 7777654 4556678889999999999999997432111111 122467899999999999986 58899
Q ss_pred EecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 828 LMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 828 ~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
++|++++|++++++++++|+++++++
T Consensus 403 i~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 403 LGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998754
No 15
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=100.00 E-value=2e-51 Score=470.58 Aligned_cols=380 Identities=20% Similarity=0.298 Sum_probs=295.8
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+++||.||+ +|||+.+|+++.++|| +||+|++|+.+|++++.+.+ ..+.++...+|+++|+++
T Consensus 48 ~~~~~~--~~g~~~~d~~G~----~ylD~~~g~~~~~lgh-~~p~v~~ai~~~~~~~~~~~-~~~~~~~~~~l~~~la~~ 119 (433)
T 1z7d_A 48 PVVLKR--AKGVFVYDVNDK----RYYDFLSAYSSVNQGH-CHPNILNAMINQAKNLTICS-RAFFSVPLGICERYLTNL 119 (433)
T ss_dssp EEEEEE--EEBTEEEETTCC----EEEESSHHHHTTTTCB-TCHHHHHHHHHHHTTCSCCC-TTSEEHHHHHHHHHHHHH
T ss_pred CceEEe--eecCEEEECCCC----EEEEcccchhhcccCC-CCHHHHHHHHHHHHhCCCcc-CCcCCHHHHHHHHHHHhh
Confidence 556666 788999999999 9999999999999999 89999999999999876643 246778899999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHH-hhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFS-FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~-~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
++ .++|+|+|||+|||+.|+|++ +.|+ ..+|..+|| .+||+++++|||++.+++++++.+.++.
T Consensus 120 ~g---~~~v~~~~sGseA~~~al~~a-~~~~~~~~g~~~gr-----------~~vi~~~~~yhg~~~~~~~~~g~~~~~~ 184 (433)
T 1z7d_A 120 LG---YDKVLMMNTGAEANETAYKLC-RKWGYEVKKIPENM-----------AKIVVCKNNFSGRTLGCISASTTKKCTS 184 (433)
T ss_dssp HT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTSCCCTTC-----------CEEEEETTC-------------------
T ss_pred cC---CCeEEEeCCHHHHHHHHHHHH-HHHhhhccCCCCCC-----------CeEEEEeCCcCCcchhhhcccCCccccc
Confidence 86 479999999999999999998 4443 233322232 7899999999999999888876443321
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
++++.. .++..+++ +| .+.+++.++
T Consensus 185 --------~~~p~~--------~~v~~~~~--------------------------~d--------~~~le~~l~----- 209 (433)
T 1z7d_A 185 --------NFGPFA--------PQFSKVPY--------------------------DD--------LEALEEELK----- 209 (433)
T ss_dssp -----------------------CEEEECT--------------------------TC--------HHHHHHHHT-----
T ss_pred --------cCCCCC--------CCeEEeCC--------------------------CC--------HHHHHHHhC-----
Confidence 111110 11222221 12 245666663
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.+++++||+||+ ++++|+++++++++++|+++|++||++||+||||+||||+|.+++++++|+.||++||||++++|
T Consensus 210 --~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G 286 (433)
T 1z7d_A 210 --DPNVCAFIVEPI-QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSGG 286 (433)
T ss_dssp --STTEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTT
T ss_pred --CCCEEEEEEECC-CCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCEEEECccccCC
Confidence 246899999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
|+|+|++++++++++.+... .+++||++||++|++++++|+.++++++.+++.++++++.+.| .++...+
T Consensus 287 ~~~~G~v~~~~~~~~~l~~~------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L----~~l~~~~ 356 (433)
T 1z7d_A 287 HYPISAVLANDDIMLVIKPG------EHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENL----KRELKDS 356 (433)
T ss_dssp SSCCEEEEECHHHHTTCCTT------CCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH----HHHHTTC
T ss_pred CCCeEEEEECHHHHhhhccc------cccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 88999999999999877542 4788999999999999999999876667777777776666644 4444567
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
|.+..+++.|+|+++++.... ..+..+++.|+++||++.|. ++.+|++||+.+|++++++++++|+++++++
T Consensus 357 ~~~~~~~~~g~~~~i~~~~~~-------~~~~~~~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 429 (433)
T 1z7d_A 357 KIVRDVRGKGLLCAIEFKNEL-------VNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFF 429 (433)
T ss_dssp TTEEEEEEETTEEEEEECTTT-------CCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeeeeEEEEEEccCh-------hHHHHHHHHHHHCCeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHH
Confidence 888889999999999997431 01567889999999999986 5899999999999999999999999998765
No 16
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=100.00 E-value=2.1e-55 Score=507.05 Aligned_cols=418 Identities=17% Similarity=0.160 Sum_probs=326.1
Q ss_pred HHHHHHHHHHHHHHhHhhcChhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeeccccccc
Q 002941 333 DSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQG 412 (863)
Q Consensus 333 ~~l~~~L~~~~~~r~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~ 412 (863)
..+++.+.+++.++..+..++.+++.+++.............-|+++++ |+|+|+||+||| +|||+++++|+++
T Consensus 40 ~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~~g~~~~~~~~~~~p~~~~~--~~G~~l~D~dG~----~yiD~~~~~~~~~ 113 (465)
T 2yky_A 40 AQAIAAARNTFARDNPVSAGHHERARRSMPGGNTRSILFHRPFPLVIAQ--GTGSRFQDVDGH----AYVNFLGEYTAGL 113 (465)
Confidence 4445556677777777777888888776642111111111112556665 889999999999 9999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccc
Q 002941 413 PDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVL 492 (863)
Q Consensus 413 lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~ 492 (863)
+|| +||+|++|+.+|+++... ..++++...+|+++|++++| + .++|+|+|||+|||+.|+|+| |.|
T Consensus 114 lGh-~~p~V~~Av~~q~~~~~~---~~~~~~~~~~Lae~L~~~~p-~-~~~v~~~nSGseA~~~Aik~a-r~~------- 179 (465)
T 2yky_A 114 FGH-SHPVIRAAVERALAVGLN---LSTQTENEALFAEAVCDRFP-S-IDLVRFTNSGTEANLMALATA-TAI------- 179 (465)
Confidence 999 899999999999998432 24678999999999999997 3 689999999999999999999 555
Q ss_pred ccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhh
Q 002941 493 VDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (863)
Q Consensus 493 tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~ 572 (863)
+|| .+||+++++|||++.+++ ++ +... + + ++. .+.+|
T Consensus 180 tgr-----------~~ii~~~~~yHG~~~~~~--sg-~~~~---------g----~-~~~--------~~~~~------- 216 (465)
T 2yky_A 180 TGR-----------KTVLAFDGGYHGGLLNFA--SG-HAPT---------N----A-PYH--------VVLGV------- 216 (465)
Confidence 454 789999999999999888 33 1000 0 0 000 01111
Q ss_pred ccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHH
Q 002941 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN 652 (863)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~ 652 (863)
| +| .+.+++.+++ .++++++||+||+ ++++|+++++++|+++|+++|++
T Consensus 217 --------------~---~d--------~~~l~~~l~~-----~~~~~aavi~epv-~~~~G~~~~~~~~l~~l~~l~~~ 265 (465)
T 2yky_A 217 --------------Y---ND--------VEGTADLLKR-----HGHDCAAILVEPM-LGAGGCVPAERAFLDLLRAEASR 265 (465)
Confidence 0 12 2345555542 2468999999998 99999999999999999999999
Q ss_pred cCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHH
Q 002941 653 RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALG 732 (863)
Q Consensus 653 ~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla 732 (863)
||++||+||||+ | |+|.+|+++++|+.||++||||+++|| +|+|++++++++++.+... ....+.+++||++||++
T Consensus 266 ~g~llI~DEv~~-~-r~g~~~a~~~~gv~pDi~t~sK~lg~G-~piG~v~~~~~i~~~l~~~-~~g~~~~~~T~~~npla 341 (465)
T 2yky_A 266 CGALLIFDEVMT-S-RLSGGGAQEMLGISADLTTLGKYIGGG-MSFGAFGGRRDLMERFDPA-RDGAFAHAGTFNNNILT 341 (465)
Confidence 999999999999 6 999999999999999999999999999 8999999999999988641 01224588999999999
Q ss_pred HHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcC-----CCCchHHHHH
Q 002941 733 CAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN-----AGYGSLYAAS 807 (863)
Q Consensus 733 ~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~-----~~~~~~~~~~ 807 (863)
|+|++++|++++++++++++.++++++++.| .+.+++++.+.++++.|+|+++++.++... ..........
T Consensus 342 ~aAa~aaL~~l~~~~~~~~~~~~~~~l~~~L----~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~ 417 (465)
T 2yky_A 342 MSAGHAALTQIYTRQAASDLSASGDRFRANL----NRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKEL 417 (465)
Confidence 9999999999988888888888888888755 444566777788999999999999752100 0011223567
Q ss_pred HHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 808 LLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 808 l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
++..|+++||++.|.+... ||+++|++|||+++++|+++++++.+
T Consensus 418 ~~~~ll~~GV~v~p~~~~~---~s~~~t~edid~~l~~l~~~l~~~~~ 462 (465)
T 2yky_A 418 FFFHMLRKGIYLAPRGMYA---LSLEIADAGRDAFAEALADFIGEQRA 462 (465)
Confidence 8999999999999876322 78899999999999999999987754
No 17
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=100.00 E-value=4.9e-51 Score=468.35 Aligned_cols=378 Identities=20% Similarity=0.302 Sum_probs=304.5
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+++||.||+ +|||+.+|+|+.++|| +||+|++|+.+|++++.+.+ ..+.++...+|+++|+++
T Consensus 59 ~~~~~~--~~G~~~~d~~g~----~ylD~~sg~~~~~lgh-~~p~v~~Ai~~~~~~~~~~~-~~~~~~~~~~l~~~la~~ 130 (439)
T 2oat_A 59 PVALER--GKGIYLWDVEGR----KYFDFLSSYSAVNQGH-CHPKIVNALKSQVDKLTLTS-RAFYNNVLGEYEEYITKL 130 (439)
T ss_dssp SCEEEE--EEBTEEEETTCC----EEEESSGGGGTTTTCB-TCHHHHHHHHHHHTTCSCCC-TTSEESSHHHHHHHHHHH
T ss_pred CeeEEe--eecCEEEECCCC----EEEEccCCcccccCCC-CCHHHHHHHHHHHHhcCccc-CccCCHHHHHHHHHHHHh
Confidence 456666 788999999999 9999999999999999 89999999999999876643 235678899999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHH-hhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFS-FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~-~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
++ .++++|+|||+||++.|+|++ +.|+ ..+|..+| +.+||+++++|||++.+++++++.+.++.
T Consensus 131 ~g---~~~v~~~~sGseA~~~al~~~-~~~~~~~~g~~~g-----------~~~vi~~~~~yhg~~~~~~~~~g~~~~~~ 195 (439)
T 2oat_A 131 FN---YHKVLPMNTGVEAGETACKLA-RKWGYTVKGIQKY-----------KAKIVFAAGNFWGRTLSAISSSTDPTSYD 195 (439)
T ss_dssp HT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTTCCCTT-----------CCEEEEETTCCCCSSHHHHTTCCCHHHHT
T ss_pred cC---CCEEEEeCCHHHHHHHHHHHH-HHHhhhccCCCCC-----------CCeEEEEcCCCCCCCHhHhhcCCChhccc
Confidence 86 479999999999999999999 4443 22332223 26899999999999998888765332211
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
++++.. .++..++++ | .+.+++.++
T Consensus 196 --------~~~p~~--------~~v~~~~~~--------------------------d--------~~~le~~l~----- 220 (439)
T 2oat_A 196 --------GFGPFM--------PGFDIIPYN--------------------------D--------LPALERALQ----- 220 (439)
T ss_dssp --------TSCSCC--------TTEEEECSS--------------------------C--------HHHHHHHTT-----
T ss_pred --------CCCCCC--------CCeEEeCCC--------------------------C--------HHHHHHHhC-----
Confidence 111110 112222221 2 245666653
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.+++++|++||+ ++++|+++++++++++|+++|++||++||+||||+||||+|.+++++++|+.||++|+||+++||
T Consensus 221 --~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~t~sK~l~~G 297 (439)
T 2oat_A 221 --DPNVAAFMVEPI-QGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGG 297 (439)
T ss_dssp --STTEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTT
T ss_pred --CCCEEEEEEECC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcEEEecccccCC
Confidence 246899999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
|+|+|++++++++++.+... .+++||++||++|+++.++|+.++++++.+++.++++++.+.| .+. .+
T Consensus 298 ~~~~G~v~~~~~~~~~l~~~------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L----~~l--~~ 365 (439)
T 2oat_A 298 LYPVSAVLCDDDIMLTIKPG------EHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNEL----MKL--PS 365 (439)
T ss_dssp SSCCEEEEECHHHHTTSCTT------SSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH----TTS--CT
T ss_pred CCCeEEEEECHHHHhccCCC------CcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH----HHh--cC
Confidence 88999999999999887542 4788999999999999999999876667777777666666543 222 46
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
+.+..+++.|+|+++++.+.. . . ....+.+.|+++||++.|. ++.+|+.||+.+|++++++++++|++++++
T Consensus 366 ~~~~~~~~~g~~~~v~l~~~~-~--~---~~~~l~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 366 DVVTAVRGKGLLNAIVIKETK-D--W---DAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp TTEEEEEEETTEEEEEECCCS-S--C---CHHHHHHHHHHTTEECCBSSSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEeeeeEEEEEEecCc-c--H---HHHHHHHHHHHCCeEEecCCCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 777789999999999997531 0 0 1457889999999999986 489999999999999999999999988754
No 18
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=3.2e-50 Score=459.15 Aligned_cols=389 Identities=16% Similarity=0.223 Sum_probs=307.1
Q ss_pred CeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHh
Q 002941 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (863)
Q Consensus 375 ~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (863)
.|.++++ |+|+++||.||+ +|||+++++|++++|| +||+|++|+.+|+++... ..++++...+|+++|++
T Consensus 37 ~p~~~~~--~~G~~~~d~~g~----~ylD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~la~ 106 (434)
T 3l44_A 37 APIAMER--GKGAYFWDVDGN----KYIDYLAAYGPIITGH-AHPHITKAITTAAENGVL---YGTPTALEVKFAKMLKE 106 (434)
T ss_dssp CCCCEEE--EEBTEEEETTCC----EEEECCGGGTTCSSCB-TCHHHHHHHHHHHHHCSC---CSSCCHHHHHHHHHHHH
T ss_pred CCceEEE--eecCEEEECCCC----EEEECCCchhccccCC-CCHHHHHHHHHHHHhCcC---CCCCCHHHHHHHHHHHH
Confidence 4567776 788999999999 9999999999999999 899999999999998532 24678999999999999
Q ss_pred hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 455 ~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
.++ + .++++|+|||+||++.|+|++ +.+ +++ .+||+++++|||.+.+++++++...+..
T Consensus 107 ~~~-~-~~~v~~~~sGsea~~~ai~~a-~~~-------~~~-----------~~vi~~~~~yhg~~~~~~~~~g~~~~~~ 165 (434)
T 3l44_A 107 AMP-A-LDKVRFVNSGTEAVMTTIRVA-RAY-------TGR-----------TKIMKFAGCYHGHSDLVLVAAGSGPSTL 165 (434)
T ss_dssp HCT-T-CSEEEEESSHHHHHHHHHHHH-HHH-------HCC-----------CEEEEETTCCCCSSGGGGBC-------C
T ss_pred hCC-C-CCEEEEeCchHHHHHHHHHHH-HHh-------hCC-----------CEEEEEcCccCCCcHHHHhhcCCccccc
Confidence 987 3 689999999999999999999 445 233 7899999999999999998876432211
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
. .+... ..+... ...+..+++ +| .+.+++.+++
T Consensus 166 ~--~~~~~------~~~~~~-~~~~~~~~~--------------------------~d--------~~~le~~l~~---- 198 (434)
T 3l44_A 166 G--TPDSA------GVPQSI-AQEVITVPF--------------------------NN--------VETLKEALDK---- 198 (434)
T ss_dssp C--CBSST------TCCHHH-HTTEEEECT--------------------------TC--------HHHHHHHHHH----
T ss_pred C--CCCcC------CCCCcC-CCceEecCc--------------------------cc--------HHHHHHHHHh----
Confidence 0 00000 000000 001111110 12 2456666653
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
+++++++||+||+ ++++|+++++++|+++|+++|++||++||+||||+|| |+|.+++++++++.||++||||++++|
T Consensus 199 -~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G 275 (434)
T 3l44_A 199 -WGHEVAAILVEPI-VGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGVTPDLTALGKVIGGG 275 (434)
T ss_dssp -HGGGEEEEEECSS-BCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTCCCSEEEEEGGGGTT
T ss_pred -CCCCEEEEEEcCC-CCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccHHHHHcCCCCCeeehhhhhcCC
Confidence 2467999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+... ..+.+++||++||++|++++++|+.++++++.+++.++++++++.| .+....+
T Consensus 276 -~~iG~~~~~~~i~~~~~~~---~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L----~~~~~~~ 347 (434)
T 3l44_A 276 -LPIGAYGGKKEIMEQVAPL---GPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGI----LEQAAKH 347 (434)
T ss_dssp -SSCEEEEECHHHHTTBTTT---SSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH----HHHHHHT
T ss_pred -cCeeeEEEcHHHHHhhccC---CCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 8999999999999988642 2246889999999999999999999987778888888887777755 4455667
Q ss_pred CCeeEecccceEEEEEEccCCcCC-----CCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNA-----GYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~-----~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
+.+..+++.|+|+.+++.+..... .........+.+.|+++||++++.+ +.+|+ ++++|++++++++++|++
T Consensus 348 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~rl--~~~~t~e~i~~~l~~l~~ 425 (434)
T 3l44_A 348 NIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKYEAWFL--TTEHTKEDIEYTIEAVGR 425 (434)
T ss_dssp TCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSSTTCCEEC--CTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecCCCcEEE--ecccCHHHHHHHHHHHHH
Confidence 777889999999999996432110 0122345678899999999999876 56665 678999999999999999
Q ss_pred HHHHHH
Q 002941 849 RLEEFD 854 (863)
Q Consensus 849 ~l~~l~ 854 (863)
+++++.
T Consensus 426 ~l~~~~ 431 (434)
T 3l44_A 426 AFAALA 431 (434)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998765
No 19
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=100.00 E-value=3.4e-51 Score=469.56 Aligned_cols=434 Identities=19% Similarity=0.262 Sum_probs=334.4
Q ss_pred hhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhc
Q 002941 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~ 432 (863)
..+.+.+++||||+++..+. ..+.++++ |+|+++||.+|+ +|+|+.+++|++++|| +||+|++|+.+|++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~g~~~~d~~g~----~~lD~~~~~~~~~lG~-~~~~v~~a~~~~~~~~ 82 (449)
T 3a8u_X 11 ASQLKLDAHWMPYTANRNFL-RDPRLIVA--AEGSWLVDDKGR----KVYDSLSGLWTCGAGH-TRKEIQEAVAKQLSTL 82 (449)
T ss_dssp GGGSCGGGSCCTTSCHHHHH-HSCCCEEE--EEBTEEEETTCC----EEEETTHHHHTCTTCB-SCHHHHHHHHHHTTTC
T ss_pred HHhhhhcccccccccccccc-CCCceEEe--eecCEEEECCCC----EEEECCccHhhccCCC-CCHHHHHHHHHHHHhC
Confidence 34567789999999864322 13566766 788999999999 9999999999999999 6999999999999886
Q ss_pred ccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEe
Q 002941 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (863)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~ 512 (863)
.+..+..+.++...+|+++|++++|.+ .++|+|++||+||++.|++++ +.|+..+|++ + +.+||++
T Consensus 83 ~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggsea~~~al~~~-~~~~~~~g~~-~-----------~~~vi~~ 148 (449)
T 3a8u_X 83 DYSPGFQYGHPLSFQLAEKITDLTPGN-LNHVFFTDSGSECALTAVKMV-RAYWRLKGQA-T-----------KTKMIGR 148 (449)
T ss_dssp SCCCSSSCCCHHHHHHHHHHHTTSSTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTCT-T-----------CCEEEEE
T ss_pred CCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEcCcHHHHHHHHHHHH-HHHHHhcCCC-C-----------CCEEEEE
Confidence 522222567888999999999998744 579999999999999999998 4566655542 2 2689999
Q ss_pred cCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccC
Q 002941 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (863)
Q Consensus 513 ~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d 592 (863)
+.+|||.+.+++++++.+.++. ++++. ..++..++.|..+.+. +. ..|
T Consensus 149 ~~~yhg~~~~~~~~~g~~~~~~--------~~~~~--------~~~~~~v~~~~~~~~~---------------~~-~~d 196 (449)
T 3a8u_X 149 ARGYHGVNIAGTSLGGVNGNRK--------LFGQP--------MQDVDHLPHTLLASNA---------------YS-RGM 196 (449)
T ss_dssp TTCCCCSSHHHHHHCCCHHHHT--------TTCCC--------SCSEEEECCCCCGGGT---------------TC-SSS
T ss_pred CCCcCCCChhhhhccCChhhcc--------ccCCC--------CCCCeEecCCccccCc---------------cc-cCC
Confidence 9999999998888876433221 11111 0234556666433210 00 001
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc
Q 002941 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (863)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~ 672 (863)
.+++...+.+.+++.+++ .+++++++|++||+ ++++|+++++++|+++|+++|++||++||+||||+||||+|.+
T Consensus 197 ~~~~~~~~~~~le~~l~~----~~~~~~~~vi~~p~-~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~ 271 (449)
T 3a8u_X 197 PKEGGIALADELLKLIEL----HDASNIAAVFVEPL-AGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSM 271 (449)
T ss_dssp CSSSHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred hHHHHHHHHHHHHHHHHh----cCCCCEEEEEEcCc-cCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcc
Confidence 011222335667777753 12357899999998 8999999999999999999999999999999999999999998
Q ss_pred chhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCc---cceeecccCCCccHHHHHHHHHHHHHhcChhhH
Q 002941 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK---LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTN 749 (863)
Q Consensus 673 ~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~---~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~ 749 (863)
++++++++.||++|+||++++||+|+|++++++++++.+..... ...+.+++||++||++|+++.++|+.++++++.
T Consensus 272 ~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~ 351 (449)
T 3a8u_X 272 FGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLV 351 (449)
T ss_dssp SHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred hhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcCHH
Confidence 89999999999999999999998999999999999998875310 122357789999999999999999998766677
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEe
Q 002941 750 HNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLM 829 (863)
Q Consensus 750 ~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ 829 (863)
++++++.+++++.| .+ +.+++.+..+++.|+++.+++....... ......+.+.|+++||++++.++.+|++
T Consensus 352 ~~~~~~~~~l~~~L----~~-l~~~~~~~~~~~~g~~~~i~~~~~~~~~---~~~~~~~~~~l~~~Gv~v~~~g~~iRis 423 (449)
T 3a8u_X 352 QSVAEVAPHFEKAL----HG-IKGAKNVIDIRNFGLAGAIQIAPRDGDA---IVRPFEAGMALWKAGFYVRFGGDTLQFG 423 (449)
T ss_dssp HHHHHHHHHHHHHH----HT-TTTSTTEEEEEEETTEEEEEECCBTTBS---SHHHHHHHHHHHHHTEECEEETTEEEEC
T ss_pred HHHHHHHHHHHHHH----HH-HhcCCCeEEEeeeEEEEEEEEecCcccc---cccHHHHHHHHHHCCcEEecCCCEEEEE
Confidence 77777766666544 33 3457778888999999999997532000 0012358888999999999988999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 830 CGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 830 ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
||+.+|++++++++++|+++++++
T Consensus 424 ~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 424 PTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988653
No 20
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=100.00 E-value=1.6e-49 Score=453.29 Aligned_cols=387 Identities=19% Similarity=0.254 Sum_probs=305.9
Q ss_pred CeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHh
Q 002941 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (863)
Q Consensus 375 ~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (863)
.|.++++ |+|+++||.||+ +|||+++++|++++|| +||+|++|+.+|+++..+ ..++++...+|+++|++
T Consensus 35 ~p~~~~~--~~G~~~~d~~g~----~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~---~~~~~~~~~~l~~~la~ 104 (429)
T 3k28_A 35 NPLFMER--GKGSKVYDIDGN----EYIDYVLSWGPLIHGH-ANDRVVEALKAVAERGTS---FGAPTEIENKLAKLVIE 104 (429)
T ss_dssp CCCCEEE--EEBTEEEETTCC----EEEESCGGGTTCTTCB-SCHHHHHHHHHHHHHCSC---CSSCCHHHHHHHHHHHH
T ss_pred CCceEEE--eecCEEEECCCC----EEEECCCChhhcccCC-CCHHHHHHHHHHHhhCcC---cCCCCHHHHHHHHHHHH
Confidence 4567776 788999999999 9999999999999999 899999999999998654 24678999999999999
Q ss_pred hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 455 ~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
+++. .++++|+|||+|||+.|+|++ +.+ +|+ .+||.++++|||.+.+++..++......
T Consensus 105 ~~~~--~~~v~~~~~Gsea~~~ai~~a-~~~-------~~~-----------~~vi~~~~~yhg~~~~~~~~~g~~~~~~ 163 (429)
T 3k28_A 105 RVPS--IEIVRMVNSGTEATMSALRLA-RGY-------TGR-----------NKILKFIGCYHGHGDSLLIKAGSGVATL 163 (429)
T ss_dssp HSTT--CSEEEEESSHHHHHHHHHHHH-HHH-------HTC-----------CEEEEEETCCCCSCGGGCSSCCTTC---
T ss_pred hCCC--CCEEEEeCChHHHHHHHHHHH-HHh-------hCC-----------CEEEEECCCcCCCcHHHHHhcCCccccc
Confidence 9873 689999999999999999999 445 243 6899999999999999988776432210
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
. .+... . .+... ...+..++ .+| .+.+++.+++
T Consensus 164 ~--~~~~~----~--~~~~~-~~~~~~~~--------------------------~~d--------~~~le~~l~~---- 196 (429)
T 3k28_A 164 G--LPDSP----G--VPEGV-AKNTITVA--------------------------YND--------LESVKYAFEQ---- 196 (429)
T ss_dssp ----CCCT----T--CCHHH-HTTEEEEE--------------------------TTC--------HHHHHHHHHH----
T ss_pred C--CCCcC----C--CCCcc-cCceeecC--------------------------CCC--------HHHHHHHHHh----
Confidence 0 00000 0 00000 00000000 012 2456666653
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
+++++++||+||+ ++++|+++++++|+++|+++|++||++||+||||+|| |+|.+++++++++.||++||||++++|
T Consensus 197 -~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G 273 (429)
T 3k28_A 197 -FGDDIACVIVEPV-AGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGVTPDLTCLGKVIGGG 273 (429)
T ss_dssp -HGGGEEEEEECSS-BCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTT
T ss_pred -CCCCEEEEEEcCC-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHHhCCCCceehhhhhhcCC
Confidence 3467999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+... ..+.+++||++||++|++++++|+.++ +++.++++++.+++++.| .+....+
T Consensus 274 -~~iG~~~~~~~~~~~~~~~---~~~~~~~t~~~~~~a~aaa~aal~~~~-~~~~~~~~~~~~~l~~~L----~~~~~~~ 344 (429)
T 3k28_A 274 -LPVGAYGGKAEIMRQVAPS---GPIYQAGTLSGNPLAMAAGYETLVQLT-PESYVEFERKAEMLEAGL----RKAAEKH 344 (429)
T ss_dssp -SCCEEEEECHHHHTTBTTT---SSBCCCCTTTTCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHH----HHHHHHT
T ss_pred -CCeEEEEEcHHHHhhhccC---CCccccCCCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH----HHHHhhC
Confidence 8999999999999988642 224588999999999999999999886 667777777777776644 4556677
Q ss_pred CCeeEecccceEEEEEEccCCcC-----CCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~-----~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
+.+..+++.|+++++++.++... ..........+++.|+++||+++|.+ +.+|+ ++.+|++++++++++|++
T Consensus 345 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~r~--~~~~t~e~i~~~l~~l~~ 422 (429)
T 3k28_A 345 GIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFL--STVHSDADIEATIAAAEI 422 (429)
T ss_dssp TCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCBCC--CTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCCCCCEEE--ECCCCHHHHHHHHHHHHH
Confidence 88889999999999998753210 01123345788999999999999865 55665 689999999999999999
Q ss_pred HHHHH
Q 002941 849 RLEEF 853 (863)
Q Consensus 849 ~l~~l 853 (863)
+++++
T Consensus 423 ~l~~~ 427 (429)
T 3k28_A 423 AMSKL 427 (429)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 88654
No 21
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=100.00 E-value=5e-49 Score=448.90 Aligned_cols=387 Identities=18% Similarity=0.233 Sum_probs=295.7
Q ss_pred CeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHh
Q 002941 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (863)
Q Consensus 375 ~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (863)
.|+++++ |+|+++||.||+ +|||+++++|++++|| +||+|++|+.+|+++..+. +++++...+|+++|++
T Consensus 35 ~p~~~~~--~~G~~~~d~~g~----~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~~---~~~~~~~~~la~~l~~ 104 (429)
T 4e77_A 35 IPLFIER--ADGAYLFDVDGK----AYIDYVGSWGPMILGH-NHPAIRQAVIEAVERGLSF---GAPTEMEVKMAQLVTD 104 (429)
T ss_dssp CCCCEEE--EEBTEEEETTCC----EEEESSGGGTTCTTCB-TCHHHHHHHHHHHTTCSCC---SSCCHHHHHHHHHHHH
T ss_pred CCceEEE--eecCEEEECCCC----EEEECCCchhccccCC-CCHHHHHHHHHHHHhCccc---CCCCHHHHHHHHHHHh
Confidence 3567776 788999999999 9999999999999999 8999999999999986542 4678999999999999
Q ss_pred hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 455 ~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
.++. .++++|+|||+|||+.|+|+| +.+ ++| .+||+++++|||.+.+++..++......
T Consensus 105 ~~~~--~~~v~~~~sGsea~~~al~~a-~~~-------~~~-----------~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 163 (429)
T 4e77_A 105 LVPT--MDMVRMVNSGTEATMSAIRLA-RGY-------TGR-----------DKIIKFEGCYHGHADCLLVKAGSGALTL 163 (429)
T ss_dssp HSTT--CSEEEEESSHHHHHHHHHHHH-HHH-------HCC-----------CEEEEETTCCCC----------------
T ss_pred hCCC--CCEEEEeCcHHHHHHHHHHHH-HHh-------hCC-----------CEEEEEcCccCCCChhhhhhcCCccccc
Confidence 9873 689999999999999999999 555 243 7899999999999998776654322110
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
. .+...+ .+.... ..+..++ .+| .+.+++.+++
T Consensus 164 ~--~~~~~~------~~~~~~-~~~~~~~--------------------------~~d--------~~~le~~l~~---- 196 (429)
T 4e77_A 164 G--QPNSPG------VPTDFA-KHTLTCT--------------------------YND--------LASVRQAFEQ---- 196 (429)
T ss_dssp ----CCCTT------SCGGGG-TTEEEEC--------------------------TTC--------HHHHHHHHHH----
T ss_pred C--CCCcCC------CCCccC-CceeecC--------------------------CCC--------HHHHHHHHHh----
Confidence 0 000000 000000 0000000 012 2456677753
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.++++++||+||+ ++++|++.++++|+++|+++|++||++||+||||+|| |+|.+++++++++.||++||||++++|
T Consensus 197 -~~~~~~~vi~ep~-~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~~pdi~t~sK~~~~G 273 (429)
T 4e77_A 197 -YPQEVACIIVEPV-AGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHVIPDLTCLGKIIGGG 273 (429)
T ss_dssp -STTTEEEEEECSS-BCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTCCCSEEEEEGGGGTT
T ss_pred -cCCCEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCCCCCeeeecccccCC
Confidence 3467999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+.... ...+++||++||++|++++++|+.++++++.++++++.+++++.| .+.+..+
T Consensus 274 -~~~G~~~~~~~~~~~l~~~~---~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L----~~~~~~~ 345 (429)
T 4e77_A 274 -MPVGAFGGRREVMNALAPTG---PVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGL----RHAAKEE 345 (429)
T ss_dssp -SCCEEEEECHHHHTTBTTTS---SBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH----HHHHHHT
T ss_pred -CCeEEEEECHHHHHHhccCC---CccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 79999999999999886422 245889999999999999999999987778888888777777755 4455667
Q ss_pred CCeeEecccceEEEEEEccCCcCCCC------chHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGY------GSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLY 847 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~------~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~ 847 (863)
+.+..+++.|+|+++++.+......+ .......+.+.|+++||++++.+ ..++ +++.+|++++++++++|+
T Consensus 346 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~--~~~~~t~e~i~~~l~~l~ 423 (429)
T 4e77_A 346 NIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAFEAGF--MSLAHSNEDIQKTVNAAR 423 (429)
T ss_dssp TCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSSTTSCEE--CCTTCCHHHHHHHHHHHH
T ss_pred CCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecCCCCEE--EeccCCHHHHHHHHHHHH
Confidence 77888999999999999764211111 12345788999999999999876 4444 478999999999999999
Q ss_pred HHHHH
Q 002941 848 QRLEE 852 (863)
Q Consensus 848 ~~l~~ 852 (863)
+++++
T Consensus 424 ~~l~~ 428 (429)
T 4e77_A 424 RCFAK 428 (429)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 88753
No 22
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=100.00 E-value=3.6e-50 Score=465.53 Aligned_cols=395 Identities=17% Similarity=0.140 Sum_probs=292.0
Q ss_pred cccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhc--ccccCCC--CCChHHHHHHHHHHhhcCC
Q 002941 383 CGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF--GHVMFPE--NVYEPALECAELLLQGVGK 458 (863)
Q Consensus 383 ~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~--~~~~~~~--~~~~~~~eLae~L~~~~p~ 458 (863)
+|+|+|+||.||+ +|||+++|+|++++|| +||+|++|+.+|+.+. .+....+ ...+.+.+|+++|+++.|.
T Consensus 51 ~~~G~~l~d~dG~----~ylD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~ 125 (472)
T 1ohv_A 51 ESRGNYLVDVDGN----RMLDLYSQISSIPIGY-SHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPK 125 (472)
T ss_dssp GCBBTEEEBTTSC----EEEESSHHHHTCSSCB-TCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCT
T ss_pred EEEcCEEEeCCCC----EEEECCCCHhhcccCC-CCHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhCCC
Confidence 4889999999999 9999999999999999 8999999999997653 2321111 1345677777778887765
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhh--ccc---------------cccccCCCccccccccEEEEecCCCccCcc
Q 002941 459 GWASRAYFSDNGSTAIEIALKMAFRKFSFD--HEV---------------LVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (863)
Q Consensus 459 ~~~~~v~f~~SGSeAvE~ALklA~r~~~~~--~G~---------------~tgr~~~~~~~~~~r~~II~~~~sYHG~t~ 521 (863)
+ .++|+|+|||+|||+.|||+| +.|++. +|. .+|| .|.+||+++++|||++.
T Consensus 126 ~-~~~v~f~~sGseA~~~Aik~a-~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~---------~r~~ii~~~~~yHg~~~ 194 (472)
T 1ohv_A 126 G-MSQLITMACGSCSNENAFKTI-FMWYRSKERGQSAFSKEELETCMINQAPGC---------PDYSILSFMGAFHGRTM 194 (472)
T ss_dssp T-CCEEEEESSHHHHHHHHHHHH-HHHHHHHHHTTCCCCHHHHHHHHTTCTTTS---------CCCEEEEETTCCCCSSH
T ss_pred C-cCEEEEeCCchhHHHHHHHHH-HHHhhhhccCcccccccccccccccccccC---------CCCeEEEECCCcccccH
Confidence 4 689999999999999999999 456431 221 0121 03789999999999999
Q ss_pred ccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHH
Q 002941 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (863)
Q Consensus 522 gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 601 (863)
+++++++...++.. + . |. .++.++++|. ++ ++.. ..+. .++ .......
T Consensus 195 ~~~~~~g~~~~~~~-------~----~--~~----~~~~~~~~p~-~~----------~~~~-~~~~-~~~--~~~~~d~ 242 (472)
T 1ohv_A 195 GCLATTHSKAIHKI-------D----I--PS----FDWPIAPFPR-LK----------YPLE-EFVK-ENQ--QEEARCL 242 (472)
T ss_dssp HHHHHCCSCHHHHT-------T----S--CC----CCCCEECCCC-CC----------SSGG-GCHH-HHH--HHHHHHH
T ss_pred HHHhcCCCcccccc-------C----C--CC----CCCcccCCCc-cc----------Cccc-cccc-cch--hHHHHHH
Confidence 99999875432110 0 0 00 0111233331 00 0000 0000 000 1111234
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (863)
+.|++.|... .....++++||+||+ ++++|+++++++|+++|+++|++||++||+||||+||||+|.+|+++++|+.
T Consensus 243 ~~l~~~l~~~--~~~~~~~~~vive~v-~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~ 319 (472)
T 1ohv_A 243 EEVEDLIVKY--RKKKKTVAGIIVEPI-QSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLD 319 (472)
T ss_dssp HHHHHHHHHH--HHTTCCEEEEEECSS-BCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCS
T ss_pred HHHHHHHHhc--CCCCCCEEEEEEcCC-cCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCC
Confidence 6677777530 000127999999998 9999999999999999999999999999999999999999999999999987
Q ss_pred --CcEEEeccc-cCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHH
Q 002941 682 --PDIACYGKL-LTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRI 758 (863)
Q Consensus 682 --PDivt~sKg-LggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~ 758 (863)
||++||||+ ||||| + + ++++. .+ ..+.+++||++||++|++++++|++++++++.+++.+++++
T Consensus 320 ~~~Di~t~sK~~l~GG~-~----~-~~~~~-~~------~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~ 386 (472)
T 1ohv_A 320 DPADVMTFSKKMMTGGF-F----H-KEEFR-PN------APYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKV 386 (472)
T ss_dssp SCCSEEEECGGGSSEEE-E----E-CGGGS-CS------SSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CCCCEEEEccccccCCc-c----C-chhhc-cc------ccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999 88884 2 2 55542 11 12457899999999999999999998766677777777777
Q ss_pred HHHHHHHHHHHHHhcCC-CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcH
Q 002941 759 LRELWDLELIQQISSHR-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSP 836 (863)
Q Consensus 759 l~~~l~~~l~~~~~~~p-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~ 836 (863)
+.+.| .++..++| .+..+++.|+|+++++.+. .....++..|+++||++.|.+ +.+|++||+.+|+
T Consensus 387 l~~~L----~~l~~~~~~~v~~~~~~g~~~~~~~~~~--------~~~~~~~~~l~~~Gv~~~~~g~~~iRi~~~~~~t~ 454 (472)
T 1ohv_A 387 LLTGL----LDLQARYPQFISRVRGRGTFCSFDTPDE--------SIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRD 454 (472)
T ss_dssp HHHHH----HHHHHHCTTTCEEEEEETTEEEEECSSH--------HHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCH
T ss_pred HHHHH----HHHHhhCCCcEEeecCCceEEEEEeCCh--------hHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCH
Confidence 76654 44445667 4888999999999987532 135678999999999999975 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 837 eeid~~v~~L~~~l~~l 853 (863)
++|++++++|+++++++
T Consensus 455 e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 455 HHAHLFLNIFSDILADF 471 (472)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999987653
No 23
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=100.00 E-value=1.1e-48 Score=447.22 Aligned_cols=396 Identities=21% Similarity=0.251 Sum_probs=316.6
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+++||.||+ +|+|+++++|++++|| +||+|++|+.+|++++.+..+..+.++...+|+++|+++
T Consensus 26 ~~~~~~--~~G~~v~d~~g~----~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~ 98 (439)
T 3dxv_A 26 PLAISG--GRGARLIEENGR----ELIDLSGAWGAASLGY-GHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLAS 98 (439)
T ss_dssp CCEEEE--EEBTEEEETTSC----EEEESSTTTTTCTTCB-SCHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHT
T ss_pred CceEEE--eeeCEEEeCCCC----EEEECCCchhhccCCC-CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHh
Confidence 457776 788999999999 9999999999999999 899999999999999876654567789999999999999
Q ss_pred cCCCCC-CeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCC--C
Q 002941 456 VGKGWA-SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP--Y 532 (863)
Q Consensus 456 ~p~~~~-~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~--~ 532 (863)
++.+ . ++++|++||+||++.|++++ +.+ +++ .+||+++++|||.+.+++++++... |
T Consensus 99 ~~~~-~~~~v~~~~ggsea~~~al~~~-~~~-------~~~-----------~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 158 (439)
T 3dxv_A 99 FPGE-GTHKIWFGHSGSDANEAAYRAI-VKA-------TGR-----------SGVIAFAGAYHGCTVGSMAFSGHSVQAD 158 (439)
T ss_dssp TTCT-TTEEEEEESSHHHHHHHHHHHH-HHH-------HSC-----------CEEEEETTCCCCSSHHHHCC--------
T ss_pred CCCC-CCCEEEEeCCHHHHHHHHHHHH-HHH-------hCC-----------CEEEEECCCCCCCcHHHHhhcCCCchhh
Confidence 8754 5 69999999999999999998 444 232 6899999999999999999887544 4
Q ss_pred CCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 002941 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (863)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i 612 (863)
+..+ .+. ..++..+++|+++. + .. . ....+.+++.+++
T Consensus 159 ~~~~--------~~~--------~~~~~~~~~~~~~~------------------~--~~-~---~~d~~~le~~l~~-- 196 (439)
T 3dxv_A 159 AAKA--------DGL--------ILLPYPDPYRPYRN------------------D--PT-G---DAILTLLTEKLAA-- 196 (439)
T ss_dssp -------------CE--------EEECCCCSSSCBTT------------------B--TT-S---HHHHHHHHHHHHT--
T ss_pred cccc--------CCC--------CCCcEEcCCCcccc------------------c--cc-H---HHHHHHHHHHHHh--
Confidence 3211 000 01222334432210 0 00 0 0124667777742
Q ss_pred CCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccC
Q 002941 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (863)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLg 692 (863)
.+++++++|++||+ ++++|.+.++++|+++|+++|++||++||+||||+||||+|.+++++++++.||++||||+++
T Consensus 197 --~~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~s~sK~~~ 273 (439)
T 3dxv_A 197 --VPAGSIGAAFIEPI-QSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVLGKGLG 273 (439)
T ss_dssp --SCTTCEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEEEECGGGG
T ss_pred --cCCCCEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEEEEcchhc
Confidence 24568999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 693 gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
+| +|+|++++++++++.+... .+++|| +||+++++++++|+.++++++.++++++.+++++.+ .+...
T Consensus 274 ~G-~riG~~~~~~~~~~~~~~~------~~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l----~~~~~ 341 (439)
T 3dxv_A 274 GG-LPLSAVIAPAEILDCASAF------AMQTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGL----SELAK 341 (439)
T ss_dssp TT-SCCEEEEEEHHHHTSCSSS------SCCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH----HHHHH
T ss_pred CC-cceEEEEECHHHHhhhcCC------CcCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHH
Confidence 99 5999999999999887642 478899 999999999999998877777778877777777644 45556
Q ss_pred cCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 773 SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 773 ~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
.++.+..+++.|+|+++++.++.............+.+.|+++||++++.+ +.+|++|++.+|++++++++++|+++
T Consensus 342 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~ 421 (439)
T 3dxv_A 342 RHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRA 421 (439)
T ss_dssp HCTTEEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred hCCCeEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 788889999999999999964321111123356788999999999999876 89999999999999999999999999
Q ss_pred HHHHHH
Q 002941 850 LEEFDK 855 (863)
Q Consensus 850 l~~l~~ 855 (863)
++++.+
T Consensus 422 l~~~~~ 427 (439)
T 3dxv_A 422 FSELSA 427 (439)
T ss_dssp HHTGGG
T ss_pred HHHHhc
Confidence 987754
No 24
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=100.00 E-value=1.5e-48 Score=439.27 Aligned_cols=374 Identities=22% Similarity=0.302 Sum_probs=309.1
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+++||.||+ +|||+++++|++++|| +||+|++|+.++++++.+.. ..+.++...+|+++|++.
T Consensus 19 ~~~~~~--~~G~~~~d~~g~----~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~ 90 (395)
T 3nx3_A 19 DIVLEK--GQGVYLFDDKAK----KYLDFSSGIGVCALGY-NHAKFNAKIKAQVDKLLHTS-NLYYNENIAAAAKNLAKA 90 (395)
T ss_dssp SCBEEE--EEBTEEEETTCC----EEEESSHHHHTCTTCB-SCHHHHHHHHHHHTTCSCCC-TTSBCHHHHHHHHHHHHH
T ss_pred CceEEe--eeeeEEEECCCC----EEEECCCcHHhccCCC-CCHHHHHHHHHHHHhccccc-cccCCHHHHHHHHHHHHh
Confidence 446666 788999999999 9999999999999999 89999999999999887654 346789999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
.+ .++++|++||+||++.|++++ +.++..+| ++ +.+||+++++|||.+..++++++.+.++..
T Consensus 91 ~~---~~~v~~~~gg~ea~~~al~~~-~~~~~~~g--~~-----------~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 153 (395)
T 3nx3_A 91 SA---LERVFFTNSGTESIEGAMKTA-RKYAFNKG--VK-----------GGQFIAFKHSFHGRTLGALSLTANEKYQKP 153 (395)
T ss_dssp HT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTT--CT-----------TCEEEEETTCCCCSSHHHHTTCCCHHHHGG
T ss_pred cC---CCeEEEeCCHHHHHHHHHHHH-HHHhhccC--CC-----------CCEEEEEcCCcCCCCHHHHhhcCCcccccc
Confidence 87 479999999999999999999 45554444 23 278999999999999999988764433211
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+ .+. . .++.+++++ | .+.+++.+
T Consensus 154 ~--------~~~----~----~~~~~~~~~--------------------------d--------~~~l~~~l------- 176 (395)
T 3nx3_A 154 F--------KPL----I----SGVKFAKYN--------------------------D--------ISSVEKLV------- 176 (395)
T ss_dssp G--------CSC----C----SCEEEECTT--------------------------C--------HHHHHTTC-------
T ss_pred c--------CCC----C----CCcEEeCCC--------------------------C--------HHHHHHhc-------
Confidence 0 000 0 111222211 1 23344333
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
.+++++|++||+ ++++|.++++++|+++|+++|++||++||+||||+||||+|.+++++++++.||++||||++++|
T Consensus 177 -~~~~~~v~~~~~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G- 253 (395)
T 3nx3_A 177 -NEKTCAIILESV-QGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCG- 253 (395)
T ss_dssp -CTTEEEEEEESE-ECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGTTT-
T ss_pred -cCCeEEEEEeCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEEecccccCC-
Confidence 256899999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccHHH-HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 696 IPLAATLATNAV-FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 696 ~Pigav~~~~~i-~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++ ++.+.. ..+++||++||+++++++++|+.++++++.++++++.+++++.+ .+...++
T Consensus 254 ~~~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~ 323 (395)
T 3nx3_A 254 LSVGAFVINQKVASNSLEA------GDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSL----DELINEF 323 (395)
T ss_dssp SCCEEEEECHHHHHHHSCT------TCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH----HHHHHHC
T ss_pred CceEEEEEchhhhhhhcCC------cccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 799999999999 887754 24788999999999999999998876777788887777777654 4455677
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
|.+..+++.|+++.+++.+.. .+..+.+.|+++||++++.+ +.+|++|++.+|++++++++++|++++++
T Consensus 324 ~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~l~~~Gi~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 324 DFCKKRKGLGFMQGLSLDKSV--------KVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp TTEEEEEEETTEEEEEECTTS--------CHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEeEEEEEEEEeCCcc--------hHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 888899999999999997532 25678899999999999874 89999999999999999999999988753
No 25
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=100.00 E-value=2.4e-48 Score=443.03 Aligned_cols=394 Identities=21% Similarity=0.276 Sum_probs=304.6
Q ss_pred hhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhc
Q 002941 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~ 432 (863)
+.++..+++|.+|.. .|.++++ |+|+++||.||+ +|||+.+++|++++|| +||+|++|+.+|++++
T Consensus 24 ~~~~~~~~~~~~~~~-------~~~~~~~--~~g~~~~d~~g~----~~lD~~~~~~~~~lG~-~~p~v~~ai~~~~~~~ 89 (420)
T 2pb2_A 24 TRATFDEVILPVYAP-------ADFIPVK--GKGSRVWDQQGK----EYIDFAGGIAVTALGH-CHPALVEALKSQGETL 89 (420)
T ss_dssp ----------------------CCSCEEE--EEBTEEEETTCC----EEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhccccC-------CCceEEe--eecCEEEECCCC----EEEEccccccccccCC-CCHHHHHHHHHHHHhc
Confidence 444555667765543 2445665 788999999999 9999999999999999 8999999999999987
Q ss_pred ccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEe
Q 002941 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (863)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~ 512 (863)
.+.. ..+.++...+|+++|+++++ .++++|++||+||++.|+|++ +.|+..+|.+ |+ .+||++
T Consensus 90 ~~~~-~~~~~~~~~~l~~~la~~~g---~~~v~~~~ggteA~~~al~~~-~~~~~~~~~~-g~-----------~~vi~~ 152 (420)
T 2pb2_A 90 WHTS-NVFTNEPALRLGRKLIDATF---AERVLFMNSGTEANETAFKLA-RHYACVRHSP-FK-----------TKIIAF 152 (420)
T ss_dssp CCCC-TTSCCHHHHHHHHHHHHHSS---CSEEEEESSHHHHHHHHHHHH-HHHHHHHTCT-TC-----------CEEEEE
T ss_pred cccc-CccCCHHHHHHHHHHHhhCC---CCeEEEeCCHHHHHHHHHHHH-HHHhhhccCC-CC-----------CEEEEE
Confidence 7643 24678899999999999987 479999999999999999998 4565554432 32 689999
Q ss_pred cCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccC
Q 002941 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (863)
Q Consensus 513 ~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d 592 (863)
+++|||.+..++++++...++. ++.+.. .++..++++ |
T Consensus 153 ~~~yh~~~~~~~~~~g~~~~~~--------~~~p~~--------~~~~~~~~~--------------------------d 190 (420)
T 2pb2_A 153 HNAFHGRSLFTVSVGGQPKYSD--------GFGPKP--------ADIIHVPFN--------------------------D 190 (420)
T ss_dssp TTCCCCSSHHHHHHSSCHHHHT--------TSSSCC--------SCEEEECTT--------------------------C
T ss_pred eCCcCCcCHHHHHhcCCccccc--------cCCCCC--------CCeEEecCC--------------------------C
Confidence 9999999998888766432211 111110 112222211 1
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc
Q 002941 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (863)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~ 672 (863)
.+.+++.+. +++++|++||+ ++.+|+++++++++++|+++|++||++||+||||+||||+|++
T Consensus 191 --------~~~le~~i~--------~~~~~vi~~p~-~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~ 253 (420)
T 2pb2_A 191 --------LHAVKAVMD--------DHTCAVVVEPI-QGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDL 253 (420)
T ss_dssp --------HHHHHHHCC--------TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred --------HHHHHHHhc--------cCceEEEEeCC-cCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcH
Confidence 244555552 36899999998 9999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhH
Q 002941 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (863)
Q Consensus 673 ~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l 752 (863)
++++.+++.||++||||++++| +|+|++++++++++.+.. ..++.||++||++|++++++|+.++++++.+++
T Consensus 254 ~~~~~~~~~~diit~sK~l~~G-~~iG~~~~~~~l~~~l~~------~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~ 326 (420)
T 2pb2_A 254 FAYMHYGVTPDILTSAKALGGG-FPVSAMLTTQEIASAFHV------GSHGSTYGGNPLACAVAGAAFDIINTPEVLQGI 326 (420)
T ss_dssp SHHHHHTCCCSEEEECGGGGTT-SCCEEEEECHHHHTTCC----------CCEECCCHHHHHHHHHHHHHHSSHHHHHHH
T ss_pred HHHHhcCCCCCeEEecccccCC-CceEEEEEhHHHHHhhcC------CCcCcccCcCHHHHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999999999999 799999999998887653 247789999999999999999999877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecC
Q 002941 753 IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCG 831 (863)
Q Consensus 753 ~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~pp 831 (863)
.++.+++.+.| .+....+|.+..+++.|+|+.+++.... . ....++.+.|+++||++.+.+ +.+|++||
T Consensus 327 ~~~~~~l~~~L----~~~~~~~~~~~~~~~~g~~~~v~~~~~~-~-----~~~~~l~~~l~~~Gi~v~~~~~~~iRl~~~ 396 (420)
T 2pb2_A 327 HTKRQQFVQHL----QAIDEQFDIFSDIRGMGLLIGAELKPKY-K-----GRARDFLYAGAEAGVMVLNAGADVMRFAPS 396 (420)
T ss_dssp HHHHHHHHHHH----HHHHHHHCCEEEEEEETTEEEEEECGGG-T-----TCHHHHHHHHHHTTEECEESSTTEEEECCC
T ss_pred HHHHHHHHHHH----HHHHhcCCCeEEEEecceEEEEEECCCc-h-----HHHHHHHHHHHHCCCEEEeCCCCEEEEECC
Confidence 77777776654 3333345778889999999999986431 0 014678899999999999974 89999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHH
Q 002941 832 PCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 832 l~~t~eeid~~v~~L~~~l~~l 853 (863)
+.++++++++++++|+++++++
T Consensus 397 ~~~t~eei~~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 397 LVVEEADIHEGMQRFAQAVGKV 418 (420)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 26
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=100.00 E-value=2.4e-48 Score=442.78 Aligned_cols=388 Identities=16% Similarity=0.213 Sum_probs=307.8
Q ss_pred CeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHh
Q 002941 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (863)
Q Consensus 375 ~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (863)
.|.++++ |+|+++||.||+ +|||+++++|++++|| +||+|++|+.+|++++.+. .+.++...+|+++|++
T Consensus 34 ~p~~~~~--~~G~~~~d~~g~----~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~---~~~~~~~~~la~~l~~ 103 (427)
T 3fq8_A 34 QPIVFDR--VKDAYAWDVDGN----RYIDYVGTWGPAICGH-AHPEVIEALKVAMEKGTSF---GAPCALENVLAEMVND 103 (427)
T ss_dssp CCCCEEE--EEBTEEEETTSC----EEEESSGGGTTCTTCB-TCHHHHHHHHHHHTTCSCC---SSCCHHHHHHHHHHHH
T ss_pred CCceEEE--eeeCEEEECCCC----EEEECCCchhhhccCC-CCHHHHHHHHHHHHhCCCc---CCCCHHHHHHHHHHHH
Confidence 3567776 788999999999 9999999999999999 8999999999999987553 3478999999999999
Q ss_pred hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 455 ~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
..+ + .++++|+|||+||++.|+|+| +.+ +|+ .+||+++++|||.+.+++.+++......
T Consensus 104 ~~~-~-~~~v~~~~ggsea~~~al~~a-~~~-------~~~-----------~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 162 (427)
T 3fq8_A 104 AVP-S-IEMVRFVNSGTEACMAVLRIM-RAY-------TGR-----------DKIIKFEGCYHGHADMFLVKAGSGVATL 162 (427)
T ss_dssp HST-T-CSEEEEESSHHHHHHHHHHHH-HHH-------HCC-----------CEEEEEETCCCCSCGGGCSSCCTHHHHH
T ss_pred hCC-C-CCEEEEeCCHHHHHHHHHHHH-HHh-------hCC-----------CEEEEECCCcCCCCHHHHHhcCCccccc
Confidence 987 3 589999999999999999999 555 243 6899999999999998887765321100
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
. .++..+ .+.... ..+.. +| .+| .+.+++.+++
T Consensus 163 ~--~~~~~~------~~~~~~-~~~~~--~~------------------------~~d--------~~~le~~l~~---- 195 (427)
T 3fq8_A 163 G--LPSSPG------VPKKTT-ANTLT--TP------------------------YND--------LEAVKALFAE---- 195 (427)
T ss_dssp T--CCSCSS------SCHHHH-TTEEE--EE------------------------TTC--------HHHHHHHHHH----
T ss_pred C--CCCCCC------CCCccc-Cceee--cC------------------------CCC--------HHHHHHHHHh----
Confidence 0 000000 000000 00000 00 012 2456677753
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
+++++++|++||+ ++++|+++++++|+++|+++|++||++||+||||+|| |+|.+++.+++++.||++||||++++|
T Consensus 196 -~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G 272 (427)
T 3fq8_A 196 -NPGEIAGVILEPI-VGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGG 272 (427)
T ss_dssp -STTTEEEEEECSS-BCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTCCCSEEEECGGGGTT
T ss_pred -CCCCEEEEEEcCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCCCCChhhhhhhhhCC
Confidence 3568999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+... ..+.+++||++||++|++++++|+.++++++.++++++.+++++.+ .+....+
T Consensus 273 -~~~G~~~~~~~~~~~~~~~---~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~ 344 (427)
T 3fq8_A 273 -LPVGAYGGKREIMQLVAPA---GPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGL----LAIAQET 344 (427)
T ss_dssp -SSCEEEEECHHHHTTBTTT---SSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH----HHHHHHT
T ss_pred -cceEEEEEcHHHHHhhccC---CCccccCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 7999999999999988642 2346889999999999999999999987778888888887777755 4445556
Q ss_pred CCeeEecccceEEEEEEccCCcC-----CCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~-----~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
+.+..+++.|+++++++...... ..........+++.|+++||++++.+. .++.+++.+|++++++++++|+++
T Consensus 345 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~-~r~~~~~~~t~e~i~~~l~~l~~~ 423 (427)
T 3fq8_A 345 GHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQF-EAGFTSLAHTEEDIDATLAAARTV 423 (427)
T ss_dssp TCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT-SCEECCTTCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCC-CCEEeeCcCCHHHHHHHHHHHHHH
Confidence 66678899999999998753211 011223456789999999999998763 245678999999999999999998
Q ss_pred HHH
Q 002941 850 LEE 852 (863)
Q Consensus 850 l~~ 852 (863)
+++
T Consensus 424 l~~ 426 (427)
T 3fq8_A 424 MSA 426 (427)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 27
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=100.00 E-value=3.3e-48 Score=445.95 Aligned_cols=397 Identities=16% Similarity=0.144 Sum_probs=306.4
Q ss_pred cccceEEEE-cCCCcccceEEeeecccccccCCCCCcHHHH-H-HHHH---HHHhcccccCCCCCChHHHHHHHHHHhhc
Q 002941 383 CGENFSVYQ-DQKNKFIGQQFDACASWWTQGPDATLQIELA-R-DMGY---TAARFGHVMFPENVYEPALECAELLLQGV 456 (863)
Q Consensus 383 ~G~G~~v~D-~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~-~-Ai~~---q~~~~~~~~~~~~~~~~~~eLae~L~~~~ 456 (863)
+|+|+++|| .||+ +|||+++++|++++|| +||+|+ + |+.+ |++++.+.. +.+.++...+|+++|++++
T Consensus 41 ~~~g~~~~d~~~g~----~ylD~~~~~~~~~lG~-~~p~v~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~la~~la~~~ 114 (449)
T 2cjg_A 41 RSGGSYLVDAITGR----RYLDMFTFVASSALGM-NPPALVDDREFHAELMQAALNKPSN-SDVYSVAMARFVETFARVL 114 (449)
T ss_dssp TCBBTEEEBTTTCC----EEEESSHHHHTCSSCB-SCHHHHTCHHHHHHHHHHHTCCCCT-TTCCCHHHHHHHHHHHHHH
T ss_pred eeeeCEEEECCCCc----EEEEccCCccccCCCC-CCHHHHHHHHHHHHHHHHHhcCCCC-cccCCHHHHHHHHHHHHhc
Confidence 489999999 9999 9999999999999999 799999 9 9999 998876644 4577889999999999998
Q ss_pred CCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCC-CCCCCC
Q 002941 457 GKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-SPYTGF 535 (863)
Q Consensus 457 p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~-~~~~~~ 535 (863)
+....++|+|+|||+|||+.|+|++ +.|+..+|...|+ + .+.+.+||+++++|||.+.+++++++. +.++.
T Consensus 115 ~~~~~~~v~~~~~gseA~~~aik~a-~~~~~~~~~~~~~-~-----~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~- 186 (449)
T 2cjg_A 115 GDPALPHLFFVEGGALAVENALKAA-FDWKSRHNQAHGI-D-----PALGTQVLHLRGAFHGRSGYTLSLTNTKPTITA- 186 (449)
T ss_dssp CCTTCCEEEEESSHHHHHHHHHHHH-HHHHHHHHHHTTS-C-----TTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHT-
T ss_pred CCCCCCEEEEeCchHHHHHHHHHHH-HHHhccccccccc-c-----cCCCCEEEEECCCcCCcccchhhhcCCchhhcc-
Confidence 6212579999999999999999999 5564321100000 0 001368999999999999999998864 22211
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcc--hhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPE--WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~ 613 (863)
++.++. .++.++++++ .+. +.|. .......+.+++.+++
T Consensus 187 -------~~~~~~--------~~~~~~~~~d~~~~~---------------~~~~------~~~~~~~~~le~~i~~--- 227 (449)
T 2cjg_A 187 -------RFPKFD--------WPRIDAPYMRPGLDE---------------PAMA------ALEAEALRQARAAFET--- 227 (449)
T ss_dssp -------TSCCCC--------CCEECCCCCCTTCCH---------------HHHH------HHHHHHHHHHHHHHHH---
T ss_pred -------cCCCCC--------CCcEEEcCCCchhhc---------------cccc------hhhHHHHHHHHHHHHh---
Confidence 111110 1223333332 110 0010 0112234567777753
Q ss_pred CCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCC
Q 002941 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (863)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLgg 693 (863)
+.+++++|++||+ ++++|+++++++|+++|+++|++||++||+||||+||||+|.+|+++++++.||++||||++
T Consensus 228 --~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l-- 302 (449)
T 2cjg_A 228 --RPHDIACFVAEPI-QGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT-- 302 (449)
T ss_dssp --STTTEEEEEECSE-ETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGG--
T ss_pred --cCCceEEEEEeCc-CCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEEecCcc--
Confidence 2357899999997 99999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
|+|++++++++++.+...- .....+++||++||++++|++++|+.++++++.+++.++++++.+.| .++..+
T Consensus 303 ---~iG~~~~~~~~~~~l~~~~-~~~~~~~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L----~~l~~~ 374 (449)
T 2cjg_A 303 ---QVCGVMAGRRVDEVADNVF-AVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARL----DELAAD 374 (449)
T ss_dssp ---SSEEEEECGGGGGSTTCTT-TSTTSSCCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred ---cEEEEEECHHHhhhhhhcc-cCCcccccCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----HHHHhh
Confidence 8999999999988633100 01124778999999999999999999877677777777777776644 444456
Q ss_pred CCC-eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 774 HRT-VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 774 ~p~-v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+|. +..+++.|+|+++++... .....+++.|+++||++.+.| +.+|++||+.+|+++|++++++|+++++
T Consensus 375 ~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~l~~~Gv~v~~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 446 (449)
T 2cjg_A 375 FPAVVLDPRGRGLMCAFSLPTT--------ADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRSALP 446 (449)
T ss_dssp STTTSEEEEEETTEEEEECSSH--------HHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCceeeEeeccEEEEEEECCh--------HHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 776 788999999999988642 135678999999999999986 8999999999999999999999999887
Q ss_pred HH
Q 002941 852 EF 853 (863)
Q Consensus 852 ~l 853 (863)
++
T Consensus 447 ~~ 448 (449)
T 2cjg_A 447 VV 448 (449)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 28
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=100.00 E-value=1.7e-47 Score=436.12 Aligned_cols=402 Identities=20% Similarity=0.207 Sum_probs=314.2
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
+.++.+ |+|+++||.||+ +|+|+.+++|+.++|| +||+|++|+.++++++.+.. .++.++...+|+++|+++
T Consensus 26 ~~~~~~--~~g~~~~d~~g~----~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~ 97 (433)
T 1zod_A 26 PMIIER--AKGSFVYDADGR----AILDFTSGQMSAVLGH-CHPEIVSVIGEYAGKLDHLF-SEMLSRPVVDLATRLANI 97 (433)
T ss_dssp SSCCCE--EEBTEEECTTCC----EEEETTHHHHTCTTCB-TCHHHHHHHHHHHHHCCCCC-TTCCCHHHHHHHHHHHHH
T ss_pred CceEEE--eecCEEEeCCCC----EEEEcccchhccccCC-CCHHHHHHHHHHHHhCcccc-cccCCHHHHHHHHHHHHh
Confidence 334444 788999999999 9999999999999999 89999999999999876533 467788899999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
+|.+ .++|+|++||+||++.|++++ +.+ +|+ .+||+++++|||.+.+++++++...+..
T Consensus 98 ~~~~-~~~v~~~~gg~ea~~~a~~~~-~~~-------~~~-----------~~vi~~~~~yhg~~~~~~~~~~~~~~~~- 156 (433)
T 1zod_A 98 TPPG-LDRALLLSTGAESNEAAIRMA-KLV-------TGK-----------YEIVGFAQSWHGMTGAAASATYSAGRKG- 156 (433)
T ss_dssp SCTT-CCEEEEESCHHHHHHHHHHHH-HHH-------HTC-----------CEEEEETTCCCCSSHHHHHTCCSSCCSS-
T ss_pred CCCC-cCEEEEeCchHHHHHHHHHHH-HHh-------hCC-----------CeEEEECCCcCCCChhHHhhcCCccccc-
Confidence 8754 579999999999999999988 444 232 6899999999999999988876432211
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+++. ..++..++.|..++ ..++... ++......+.+++.+++ .
T Consensus 157 --------~~~~--------~~~~~~v~~~~~~~---------------~~~~~~~--~~~~~~d~~~le~~l~~----~ 199 (433)
T 1zod_A 157 --------VGPA--------AVGSFAIPAPFTYR---------------PRFERNG--AYDYLAELDYAFDLIDR----Q 199 (433)
T ss_dssp --------SCCC--------CTTEEEECCCCTTS---------------CCCEETT--EECHHHHHHHHHHHHHH----H
T ss_pred --------cCCC--------CCCceEecCCcccc---------------cccCCch--hhhHHHHHHHHHHHHHh----c
Confidence 1110 12445566664331 0111000 00011124567777753 1
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++++++|++||+ ++++|+++++++|+++|+++|++||++||+||||+||||+|.+++++++++.||+++|||++++|
T Consensus 200 ~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~~G- 277 (433)
T 1zod_A 200 SSGNLAAFIAEPI-LSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAG- 277 (433)
T ss_dssp CCSCEEEEEECSE-ETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTT-
T ss_pred CCCCeEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEEEecccccCC-
Confidence 2357899999998 99999999999999999999999999999999999999999989999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+.... +.+++||++||++++++.++|+.++++++.+++.++.+++.+.+ .++...+|
T Consensus 278 ~~ig~~~~~~~~~~~~~~~~----~~~~~t~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l----~~l~~~~~ 349 (433)
T 1zod_A 278 LPLAAIVTSAAIEERAHELG----YLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGL----LDLMERFD 349 (433)
T ss_dssp SSCEEEEECHHHHHHHHHTT----CCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH----HHHHHHCT
T ss_pred CCeeEEEEhHHHHHhhccCC----CCCCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----HHHHHhCC
Confidence 89999999999999886521 24568999999999999999999876667777777776666644 44445678
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-----CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-----~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.+..+++.|+|+.+++................+.+.|+++||++.+.+ +.+|++|++.+|++++++++++|++++
T Consensus 350 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l 429 (433)
T 1zod_A 350 CIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAI 429 (433)
T ss_dssp TEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence 788899999999999874210000011235678899999999998864 899999999999999999999999988
Q ss_pred HHH
Q 002941 851 EEF 853 (863)
Q Consensus 851 ~~l 853 (863)
+++
T Consensus 430 ~~~ 432 (433)
T 1zod_A 430 ERA 432 (433)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 29
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=100.00 E-value=9e-47 Score=430.92 Aligned_cols=388 Identities=18% Similarity=0.232 Sum_probs=298.8
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|+++++ |+|+++||.||+ +|||+.+++|++++|| +||+|++|+.+|+++..+ .++.++...+|+++|+++
T Consensus 39 p~~~~~--~~G~~~~d~~g~----~~lD~~~~~~~~~lG~-~~~~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~la~~ 108 (434)
T 2epj_A 39 PFYVKR--GEGAYLYTVDGA----RIVDLVLAYGPLILGH-KHPRVLEAVEEALARGWL---YGAPGEAEVLLAEKILGY 108 (434)
T ss_dssp CCCEEE--EEBTEEEETTCC----EEEESSGGGTTCTTCB-TCHHHHHHHHHHHHTCSC---CSSCCHHHHHHHHHHHHH
T ss_pred CeeEEe--eecCEEEECCCC----EEEEcccchhcccCCC-CCHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHHh
Confidence 456666 788999999999 9999999999999999 899999999999988432 246788899999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
+| + .++++|++||+||++.|+++| |.+ +++ .+||+++++|||.+.+++++++......
T Consensus 109 ~~-~-~~~v~~~~sgseA~~~al~~a-r~~-------~~~-----------~~vi~~~~~yhg~~~~~~~~~~~~~~~~- 166 (434)
T 2epj_A 109 VK-R-GGMIRFVNSGTEATMTAIRLA-RGY-------TGR-----------DLILKFDGCYHGSHDAVLVAAGSAAAHY- 166 (434)
T ss_dssp HC-T-TCEEEEESSHHHHHHHHHHHH-HHH-------HCC-----------CEEEEEETCCCCSSGGGSEECC-------
T ss_pred CC-C-CCEEEEeCCHHHHHHHHHHHH-HHh-------hCC-----------CeEEEEcCCcCCCCHHHHHhcCCCcccc-
Confidence 86 3 589999999999999999998 545 232 6899999999999999888765321110
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
..++.. ..+... ...+..+ | + +| .+.+++.+++
T Consensus 167 -~~p~~~------g~~~~~-~~~~~~~--~---------------------~---~d--------~~~le~~l~~----- 199 (434)
T 2epj_A 167 -GVPTSA------GVPEAV-ARLTLVT--P---------------------Y---ND--------VEALERVFAE----- 199 (434)
T ss_dssp -CEESST------TCCHHH-HTTEEEE--E---------------------T---TC--------HHHHHHHHHH-----
T ss_pred -CCCCCC------CCCCcc-cCceEec--C---------------------C---CC--------HHHHHHHHHh-----
Confidence 000000 000000 0000111 1 0 12 2456666653
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
.++++++||+||+ ++++|+++++++|+++|+++|++||++||+||||+|| |+|.+++++++|+.||++||||++++|
T Consensus 200 ~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G- 276 (434)
T 2epj_A 200 YGDRIAGVIVEPV-IANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGG- 276 (434)
T ss_dssp HGGGEEEEEECSS-BCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTCCCSEEEEEGGGGTT-
T ss_pred CCCCEEEEEEeCC-cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCCCCCeeeecchhcCC-
Confidence 2357999999998 9999999999999999999999999999999999999 899989999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+.... ...+++||++||++|+++.++|+.++++++.+++.++++++.+.| .+...+++
T Consensus 277 ~~~G~v~~~~~~~~~l~~~~---~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~L----~~~~~~~~ 349 (434)
T 2epj_A 277 FPVGAVAGSREVMSLLTPQG---KVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAA----SEVLDRTG 349 (434)
T ss_dssp SSCEEEEECHHHHTTBTTTS---SBCCCCTTTTCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH----HHHHHHHT
T ss_pred cceeeeeecHHHHHhhccCC---CcccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHhhCC
Confidence 89999999999998876421 134778999999999999999999876677777877777777655 33334456
Q ss_pred CeeEecccceEEEEEEccCCcC-----CCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~-----~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.+..+++.|+|+.+++.+.... ..........+.+.|+++||++.+.+.. ++.+++.+|++++++++++|++++
T Consensus 350 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-~~~~~~~~t~e~i~~~l~~l~~~l 428 (434)
T 2epj_A 350 LPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNLE-AVFTGLPHQGEALEIAVEGLRSSL 428 (434)
T ss_dssp CCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTS-CEECCTTCSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCCC-cEEEeccCCHHHHHHHHHHHHHHH
Confidence 6667899999999999752100 0001224567899999999999987521 345678999999999999999998
Q ss_pred HHH
Q 002941 851 EEF 853 (863)
Q Consensus 851 ~~l 853 (863)
+++
T Consensus 429 ~~~ 431 (434)
T 2epj_A 429 KTV 431 (434)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 30
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=100.00 E-value=4.3e-46 Score=424.38 Aligned_cols=416 Identities=28% Similarity=0.421 Sum_probs=318.5
Q ss_pred hhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccc
Q 002941 356 RAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV 435 (863)
Q Consensus 356 ~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~ 435 (863)
.+.+++|+|++.+.. ..+++++.+ |+|+++||.+|+ +|+|+.+++|++++|| .+|+|++|+.++++++.+.
T Consensus 8 ~~~~~~~~~~~~~~~--~~~~~~~~~--~~g~~~~d~~g~----~ylD~~~~~~~~~lg~-~~p~v~~a~~~~~~~~~~~ 78 (429)
T 1s0a_A 8 FDQRHILHPFTSMTS--PLPVYPVVS--AEGCELILSDGR----RLVDGMSSWWAAIHGY-NHPQLNAAMKSQIDAMSHV 78 (429)
T ss_dssp HHHHHBCCTTCCSSS--CCCCEEEEE--EEBTEEEETTSC----EEEESSTTTTTCTTCB-SCHHHHHHHHHHHHHCSCC
T ss_pred HHHHhhccccccccc--cCCceeEEe--eeeeEEEeCCCC----EEEEcCccHhhccCCC-CCHHHHHHHHHHHHhcccc
Confidence 345678999887532 223444666 788999999999 9999999999999999 7999999999999887654
Q ss_pred cCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCC
Q 002941 436 MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS 515 (863)
Q Consensus 436 ~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~s 515 (863)
.+..+.++...+++++|+++++.+ .++++|++||+||++.|++++ +.++..+|.+ +.+||+++.+
T Consensus 79 ~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggtea~~~ai~~~-~~~~~~~g~~-------------~~~vi~~~~~ 143 (429)
T 1s0a_A 79 MFGGITHAPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMKMA-LQYWQAKGEA-------------RQRFLTFRNG 143 (429)
T ss_dssp CCSSEECHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHHTCC-------------CCEEEEETTC
T ss_pred cccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHH-HHHhcccCCC-------------CCeEEEECCC
Confidence 333567888899999999999743 579999999999999999988 4554333321 2689999999
Q ss_pred CccCccccceecCCCC-CCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCch
Q 002941 516 YHGDTLGAMEAQAPSP-YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (863)
Q Consensus 516 YHG~t~gals~t~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 594 (863)
|||.+.+++++++... ++.. | .+.. .++..+++|..+. .+.++ ..|
T Consensus 144 yh~~~~~~~~~~~~~~~~~~~----~----~~~~--------~~~~~~~~~~~~~--------------~~~~~-~~d-- 190 (429)
T 1s0a_A 144 YHGDTFGAMSVCDPDNSMHSL----W----KGYL--------PENLFAPAPQSRM--------------DGEWD-ERD-- 190 (429)
T ss_dssp CCCSSHHHHTTSCTTTTTGGG----G----TTTS--------CCCEEECCCCSBC---------------CCCC-GGG--
T ss_pred CCCCchhhhhhcCCchhhccc----c----cCCC--------CCceEeCCCcccc--------------cccch-HHH--
Confidence 9999998888765432 2210 0 0000 1223344442100 00000 011
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch
Q 002941 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (863)
Q Consensus 595 ~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a 674 (863)
.+.+++.+++ +++++++|++||+.++++|.++++++|+++|+++|++||++||+||||+||||+|.+++
T Consensus 191 ------~~~l~~~l~~-----~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~ 259 (429)
T 1s0a_A 191 ------MVGFARLMAA-----HRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFA 259 (429)
T ss_dssp ------GHHHHHHHHH-----HTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSG
T ss_pred ------HHHHHHHHHh-----CCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHH
Confidence 2455666642 23578999999943788999999999999999999999999999999999999999888
Q ss_pred hhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 675 ~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
++++++.||++||||+++|||+|+|++++++++++.+.... ...+.+++||++|+++++++.++|+.++++++.+++.+
T Consensus 260 ~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~-~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~~~~ 338 (429)
T 1s0a_A 260 CEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGE-AGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVAD 338 (429)
T ss_dssp GGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTST-TSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcCC-CcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 89999999999999999999889999999999999886421 12233678999999999999999999877666677766
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCC
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCS 834 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~ 834 (863)
+.+++.+.+ .+ +..+|.+..+++.|+++.+++.... ....+...|+++||++++.++.+|++|++.+
T Consensus 339 ~~~~l~~~L----~~-l~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~l~~~l~~~Gi~v~~~~~~iRis~~~~~ 405 (429)
T 1s0a_A 339 IEVQLREQL----AP-ARDAEMVADVRVLGAIGVVETTHPV--------NMAALQKFFVEQGVWIRPFGKLIYLMPPYII 405 (429)
T ss_dssp HHHHHHHHH----GG-GGGCTTEEEEEEETTEEEEEESSCB--------CHHHHHHHHHHTTEECCCBTTEEEECCCTTC
T ss_pred HHHHHHHHH----HH-HhcCCCEEEEEEeeEEEEEEECCcc--------cHHHHHHHHHHCCCEEeccCCEEEEECCCCC
Confidence 666655533 22 2236777778999999999886421 1456888899999999998899999999999
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~~l 853 (863)
|++++++++++|+++++++
T Consensus 406 t~e~i~~~~~~l~~~~~~~ 424 (429)
T 1s0a_A 406 LPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp CHHHHHHHHHHHHHHTSSG
T ss_pred CHHHHHHHHHHHHHHHHhh
Confidence 9999999999999887543
No 31
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=9.5e-46 Score=421.19 Aligned_cols=384 Identities=20% Similarity=0.258 Sum_probs=295.9
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+++||.||+ +|+|+.+++|++++|| +||+|++|+.+|+++..+ .++.++...+|+++|+++
T Consensus 35 p~~~~~--~~g~~~~d~~g~----~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~l~~~ 104 (424)
T 2e7u_A 35 PPFLVR--GEGAYVWDADGN----RYLDYVMSWGPLILGH-AHPKVLARVRETLERGLT---FGAPSPLEVALAKKVKRA 104 (424)
T ss_dssp CCCEEE--EEBTEEEETTCC----EEEESSGGGTTCTTCB-TCHHHHHHHHHHHHTCSC---CSSCCHHHHHHHHHHHHH
T ss_pred CeeEEe--eecCEEEeCCCC----EEEEccccccccccCC-CCHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHHh
Confidence 556666 788999999999 9999999999999999 899999999999988432 246788899999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
+| + .++++|++||+||++.|+++| |.+ +++ .+||+++++|||.+.+++++++.....
T Consensus 105 ~~-~-~~~v~~~~~g~ea~~~al~~a-r~~-------~~~-----------~~vi~~~~~yhg~~~~~~~~~~~~~~~-- 161 (424)
T 2e7u_A 105 YP-F-VDLVRFVNSGTEATMSALRLA-RGY-------TGR-----------PYIVKFRGNYHGHADGLLVEAGSGALT-- 161 (424)
T ss_dssp CT-T-CCEEEEESSHHHHHHHHHHHH-HHH-------HCC-----------CEEEEETTCCCCCCGGGSEECCSSSCC--
T ss_pred CC-C-CCEEEEeCCHHHHHHHHHHHH-HHh-------hCC-----------CEEEEECCCcCCCcHHHHHhcCCcccc--
Confidence 86 3 589999999999999999998 555 232 689999999999999888776532111
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+..++.. ..+... ...+.. +| + +| .+.+++.+++
T Consensus 162 ~~~p~~~------g~~~~~-~~~~~~--~~---------------------~---~d--------~~~le~~l~~----- 195 (424)
T 2e7u_A 162 LGVPSSA------GVPEEY-AKLTLV--LE---------------------Y---ND--------PEGLREVLKR----- 195 (424)
T ss_dssp BCEESST------TCCHHH-HTTEEE--EC---------------------T---TC--------HHHHHHHHHH-----
T ss_pred cCCCCCC------CCCCcc-CCceEe--CC---------------------C---CC--------HHHHHHHHHh-----
Confidence 0000000 000000 000111 11 0 12 2456666642
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
.++++++||+||+ ++++|+++++++|+++|+++ ++||++||+||||+|| |+|.+++++++|+.||++||||++++|
T Consensus 196 ~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G- 271 (424)
T 2e7u_A 196 RGEEIAAIIFEPV-VGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGLKPDLVTLGKILGGG- 271 (424)
T ss_dssp HGGGEEEEEECSS-BCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTT-
T ss_pred CCCCEEEEEEeCC-CCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchhHHHHHhCCCcchhhhhhhhhCC-
Confidence 1357999999998 88899999999999999999 9999999999999999 999989999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+.... ...+++||++||++|++++++|+.+++ +++.+++.++++++++.| .+...++
T Consensus 272 ~~~G~~~~~~~~~~~~~~~~---~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L----~~~~~~~ 344 (424)
T 2e7u_A 272 LPAAAYAGRREIMEKVAPLG---PVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGL----KEVLKEK 344 (424)
T ss_dssp SSCEEEEECHHHHTTBTTTS---SBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHH----HHHHHHT
T ss_pred cceEEEEEcHHHHhhhcccC---CcccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 89999999999999886421 235778999999999999999999876 667777777777776654 4444556
Q ss_pred CCeeEecccceEEEEEEccCCcC-----CCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~-----~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
+.+..+++.|+|+.+++.+.... ..........+.+.|+++||++.+.+.. ++.+++.+|++++++++++|+++
T Consensus 345 ~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-~~~~~~~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 345 GLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNFE-AAFLSVAHREEDVEKTLEALRKA 423 (424)
T ss_dssp TCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSSS-CEECCTTCCHHHHHHHHHHHHHH
T ss_pred CCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCCC-ceEeeccCCHHHHHHHHHHHHHh
Confidence 76667899999999998642100 0001234667899999999999987521 24567899999999999999875
Q ss_pred H
Q 002941 850 L 850 (863)
Q Consensus 850 l 850 (863)
+
T Consensus 424 l 424 (424)
T 2e7u_A 424 L 424 (424)
T ss_dssp C
T ss_pred C
Confidence 3
No 32
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=100.00 E-value=5.8e-45 Score=418.48 Aligned_cols=421 Identities=17% Similarity=0.148 Sum_probs=292.1
Q ss_pred HHHHHHhHhhcChhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHH
Q 002941 341 LAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIE 420 (863)
Q Consensus 341 ~~~~~r~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~ 420 (863)
+++.++..+...+.++..+++..............|+++++ |+|+++||.||+ +|+|+.+++|++++|| +||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~G~~~~d~~g~----~~iD~~~~~~~~~lg~-~~~~ 77 (453)
T 2cy8_A 5 NDYKRKTEGSVFWAQRARSVMPDGVTADTRAFDPHGLFISD--AQGVHKTDVDGN----VYLDFFGGHGALVLGH-GHPR 77 (453)
T ss_dssp HHHHHHCHHHHHHHHHHHHHSCCC------CCSSCCCCEEE--EEBTEEEETTCC----EEEESCTTTTSCTTCB-TCHH
T ss_pred HHHHhcCchhHHHHHHHHhhcCCCCCccccccCCCCceEEE--eecCEEEECCCC----EEEECcccHhhcccCC-CCHH
Confidence 34444455555566666655532111110000112456665 788999999999 9999999999999999 8999
Q ss_pred HHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCc
Q 002941 421 LARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDT 500 (863)
Q Consensus 421 V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~ 500 (863)
|++|+.+|+++..+ .++.++...+++++|++..| + .++|+|++||+||++.|+++| |.+ +++
T Consensus 78 v~~a~~~~~~~~~~---~~~~~~~~~~la~~l~~~~~-~-~~~v~~~~gg~eA~~~al~~a-r~~-------~~~----- 139 (453)
T 2cy8_A 78 VNAAIAEALSHGVQ---YAASHPLEVRWAERIVAAFP-S-IRKLRFTGSGTETTLLALRVA-RAF-------TGR----- 139 (453)
T ss_dssp HHHHHHHHHTTTCS---SCSSCHHHHHHHHHHHHHCT-T-CSEEEEESCHHHHHHHHHHHH-HHH-------HCC-----
T ss_pred HHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHhhCC-C-CCEEEEeCCHHHHHHHHHHHH-HHh-------hCC-----
Confidence 99999999987432 24678899999999999886 3 689999999999999999998 445 232
Q ss_pred cccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcccccccc
Q 002941 501 TEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580 (863)
Q Consensus 501 ~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~ 580 (863)
.+||.++++|||.+.++++.++. .|.. ++..+ .|... ...+..+++
T Consensus 140 ------~~vi~~~~~yhg~~~~~~~~~~~-~~~~----~~~~g------~~~~~-~~~~~~~~~---------------- 185 (453)
T 2cy8_A 140 ------RMILRFEGHYHGWHDFSASGYNS-HFDG----QPAPG------VLPET-TANTLLIRP---------------- 185 (453)
T ss_dssp ------CEEEEECC---------------------------------------C-GGGEEEECT----------------
T ss_pred ------CEEEEEcCCcCCCchhhHhhcCC-ccCC----CcCCC------CCccc-cCceeecCC----------------
Confidence 67999999999999988776542 1100 00000 00000 000111110
Q ss_pred ccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEe
Q 002941 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD 660 (863)
Q Consensus 581 ~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~D 660 (863)
+| .+.+++.+++ +++++++|++||+ ++++|+++++++|+++|+++|++||++||+|
T Consensus 186 ----------~d--------~~~le~~l~~-----~~~~~~~vi~ep~-~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~D 241 (453)
T 2cy8_A 186 ----------DD--------IEGMREVFAN-----HGSDIAAFIAEPV-GSHFGVTPVSDSFLREGAELARQYGALFILD 241 (453)
T ss_dssp ----------TC--------HHHHHHHHHH-----HGGGEEEEEECSS-EHHHHTEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred ----------CC--------HHHHHHHHHh-----cCCCEEEEEECCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 12 2456666652 2357999999997 8889999999999999999999999999999
Q ss_pred cccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHH
Q 002941 661 EVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSI 740 (863)
Q Consensus 661 EV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL 740 (863)
|||+|| |+|.+++++++++.||++++||++++| +|+|++++++++++.+.... .....+++||++||++|+++.++|
T Consensus 242 Ev~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G-~~~G~v~~~~~~~~~l~~~~-~~~~~~~~t~~~n~~~~aa~~aal 318 (453)
T 2cy8_A 242 EVISGF-RVGNHGMQALLDVQPDLTCLAKASAGG-LPGGILGGREDVMGVLSRGS-DRKVLHQGTFTGNPITAAAAIAAI 318 (453)
T ss_dssp CTTTTT-TTCTTHHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHTTSSSCC----------CCCCHHHHHHHHHHH
T ss_pred cCcccc-ccCchhhhHHhCCCCcEEEEChhhhCC-cceEEEechHHHHHHhcccc-CCCceeCCCCCCCHHHHHHHHHHH
Confidence 999999 999989999999999999999999999 79999999999998876410 011347789999999999999999
Q ss_pred HH-hcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEcc-----CC------cCCCCchHHHHHH
Q 002941 741 KW-FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQA-----AG------CNAGYGSLYAASL 808 (863)
Q Consensus 741 ~~-l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~-----~~------~~~~~~~~~~~~l 808 (863)
+. + ++++.+++.++.+++.+.+ .+...+++.+..+++.|+|+.+++.. .. ............+
T Consensus 319 ~~~~-~~~~~~~~~~~~~~l~~~L----~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 393 (453)
T 2cy8_A 319 DTIL-EDDVCAKINDLGQFAREAM----NHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAM 393 (453)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHH----HHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHH
T ss_pred HHHh-hhhHHHHHHHHHHHHHHHH----HHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHH
Confidence 98 7 5666777777777776654 34444567667789999999999974 10 0000012235678
Q ss_pred HHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 809 LKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 809 ~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
...|+++||+++|.+ .+ .+++.++++++++++++|+++++++.+
T Consensus 394 ~~~l~~~Gv~v~~~~-~~--~l~~~~t~~~i~~~l~~l~~~l~~~~~ 437 (453)
T 2cy8_A 394 RMALILEGVDIGGRG-SV--FLSAQHEREHVEHLVTTFDRVLDRLAD 437 (453)
T ss_dssp HHHHHHTTEECBTTT-EE--ECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCeEEeCCC-CE--EeeccCCHHHHHHHHHHHHHHHHHHHh
Confidence 899999999997654 34 357899999999999999999987643
No 33
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.5e-44 Score=404.96 Aligned_cols=387 Identities=21% Similarity=0.286 Sum_probs=292.9
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCC-cHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATL-QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~-~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (863)
|.++.+ |+|+++||.+|+ +|+|+.++.|++++|| + ||+|++|+.+++++..+.....+.++...+|+++|++
T Consensus 25 ~~~~~~--~~g~~~~d~~g~----~~lD~~~~~~~~~lG~-~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~ 97 (419)
T 2eo5_A 25 PLVIDH--GEGVWIYDVDGN----KYLDFTSGIGVNNLGW-PSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVT 97 (419)
T ss_dssp CCCEEE--EEBTEEEETTSC----EEEESSGGGGTTTTCB-SCCHHHHHHHHHHHTTSCCCSCSCSCCHHHHHHHHHHHH
T ss_pred CceEEe--eecCEEEECCCC----EEEEccCChhhhccCC-CCCHHHHHHHHHHHhhCccccccccCCHHHHHHHHHHHH
Confidence 445655 788999999999 9999999999999999 6 9999999999998876533345678889999999999
Q ss_pred hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCC
Q 002941 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (863)
Q Consensus 455 ~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~ 533 (863)
++|.+..++++|++||+||++.|++++ +.+ +| .+||+++.+|||.+..++++++.. .++
T Consensus 98 ~~~~~~~~~v~~~~gg~ea~~~ai~~~-~~~-------~~------------~~vi~~~p~yh~~~~~~~~~~~~~~~~~ 157 (419)
T 2eo5_A 98 YSPGNFQKKVFFSNSGTEAIEASIKVV-KNT-------GR------------KYIIAFLGGFHGRTFGSISLTASKAVQR 157 (419)
T ss_dssp HSSCSSCEEEEEESSHHHHHHHHHHHH-HTT-------SC------------CEEEEETTCCCCSSHHHHHHCCSCGGGG
T ss_pred hCCCCcCCEEEEeCchHHHHHHHHHHH-HHh-------hC------------CcEEEECCCcCCCCHhhHhhcCCccccc
Confidence 987431258999999999999999988 322 11 679999999999999998887643 222
Q ss_pred CCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcc--cCc-hhHHHHHHHHHH-HHHh
Q 002941 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE--RDS-SDLASIYSSYIS-QNLL 609 (863)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~--~d~-~~~~~~~~~~le-~~l~ 609 (863)
.. ..+. ..++..+++++.++ ..|+.. ++. .+.. ...+.++ +.+.
T Consensus 158 ~~--------~~~~--------~~~~~~v~~~~~~~---------------~~~g~~~~~~~~~~~~-~~~~~l~~~~i~ 205 (419)
T 2eo5_A 158 SI--------VGPF--------MPGVIHVPYPNPYR---------------NPWHINGYENPSELVN-RVIEFIEDYIFV 205 (419)
T ss_dssp CS--------SCCC--------CTTEEEECCCCSSS---------------CTTCCCTTTCHHHHHH-HHHHHHHHTHHH
T ss_pred cc--------cCCC--------CCCCEEECCCcccc---------------ccccccccccchhhHH-HHHHHHHHHHHh
Confidence 11 0100 01344455554321 001100 000 0000 1245666 6665
Q ss_pred cCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEecc
Q 002941 610 QNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK 689 (863)
Q Consensus 610 ~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sK 689 (863)
+ ..+++++++|++||+ ++++|.++++++|+++|+++|++||++||+||||+||||+|.+++++++++.||++||||
T Consensus 206 ~---~~~~~~~~~vi~~p~-~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK 281 (419)
T 2eo5_A 206 N---LVPPEEVAGIFFEPI-QGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAK 281 (419)
T ss_dssp H---TCCGGGEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECG
T ss_pred h---ccCCCCEEEEEEeCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEecc
Confidence 3 112257899999997 999999999999999999999999999999999999999999888899999999999999
Q ss_pred ccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHH
Q 002941 690 LLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQ 769 (863)
Q Consensus 690 gLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~ 769 (863)
++++||+|+|+++++++++ .+ .. .+.+||++||++++++.++|+.+++ +.++++++.+++.+ .+
T Consensus 282 ~~~~G~~riG~~~~~~~~~-~~-~~------~~~~t~~~n~~~~~aa~aal~~~~~--~~~~~~~~~~~l~~----~L-- 345 (419)
T 2eo5_A 282 ALGGGIMPIGATIFRKDLD-FK-PG------MHSNTFGGNALACAIGSKVIDIVKD--LLPHVNEIGKIFAE----EL-- 345 (419)
T ss_dssp GGGTTTSCCEEEEEEGGGC-CC-------------CCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----HH--
T ss_pred cccCCccceEEEEEchHhh-cC-Cc------ccCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----HH--
Confidence 9999988999999999987 65 31 3678999999999999999998753 45555555544443 32
Q ss_pred HHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 770 QISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 770 ~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
.+. +..+++.|+|+.+++.... ..+. +...|+++||++++.+ +.+|++|++.+|++++++++++|++
T Consensus 346 --~~~--~~~~~~~g~~~~i~~~~~~-------~~~~-~~~~l~~~Gv~v~~~~~~~lRis~~~~~t~e~i~~~l~~l~~ 413 (419)
T 2eo5_A 346 --QGL--ADDVRGIGLAWGLEYNEKK-------VRDR-IIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKK 413 (419)
T ss_dssp --TTS--SSEEEEETTEEEEECSCHH-------HHHH-HHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred --HHh--hhheEeeeEEEEEEEecCc-------cHHH-HHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 222 4577899999999884211 1245 8888999999999975 8999999999999999999999999
Q ss_pred HHHHH
Q 002941 849 RLEEF 853 (863)
Q Consensus 849 ~l~~l 853 (863)
+++++
T Consensus 414 ~l~~~ 418 (419)
T 2eo5_A 414 VIKVV 418 (419)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 87653
No 34
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=1.1e-42 Score=390.63 Aligned_cols=372 Identities=20% Similarity=0.266 Sum_probs=299.0
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+++||.||+ +|+|+++++|+.++|| +||+|.+|+.++++++.+... .+.++...+|+++|++.
T Consensus 19 ~~~~~~--~~g~~~~d~~g~----~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~la~~ 90 (392)
T 3ruy_A 19 PIVISK--AEGVWVEDPEGN----RYMDLLSAYSAVNQGH-RHPKIINALIDQANRVTLTSR-AFHSDQLGPWYEKVAKL 90 (392)
T ss_dssp SCEECE--EEBTEEECTTCC----EEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCSCCCT-TSEETTHHHHHHHHHHH
T ss_pred CceEEe--eeeCEEEeCCCC----EEEEcCCChhhhccCC-CCHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHHh
Confidence 445665 788999999999 9999999999999999 899999999999998876542 35678899999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
.+ .++++|++||++|++.|++++++.++..+|.++| +.+||+...+|||.+.+++++++...++..
T Consensus 91 ~g---~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~-----------~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (392)
T 3ruy_A 91 TN---KEMVLPMNTGAEAVETAIKTARRWAYDVKKVEAN-----------RAEIIVCEDNFHGRTMGAVSMSSNEEYKRG 156 (392)
T ss_dssp HT---CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTT-----------CCEEEEETTCCCCSSHHHHHTCSCTTTTTT
T ss_pred cC---CCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCC-----------CcEEEEEcCCcCCCCHhhhhccCChhhccc
Confidence 87 4799999999999999999885332344444333 268999999999999999888776544421
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+ .+.. + ++..+++ +| .+.+++.++
T Consensus 157 ~--------~~~~--~------~~~~~~~--------------------------~d--------~~~l~~~l~------ 180 (392)
T 3ruy_A 157 F--------GPML--P------GIIVIPY--------------------------GD--------LEALKAAIT------ 180 (392)
T ss_dssp C--------CSCC--S------SEEEECT--------------------------TC--------HHHHHHHCC------
T ss_pred c--------CCCC--C------CCeeeCc--------------------------cc--------HHHHHHHhc------
Confidence 1 1110 0 1111111 12 244555552
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
.++++|++||+ ++++|.+.++++|+++|.++|++||++||+||+|+|||++|.+++.+.+++.||++||||+|+||+
T Consensus 181 --~~~~~v~~~~~-~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~SK~l~gG~ 257 (392)
T 3ruy_A 181 --PNTAAFILEPI-QGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILGKALGGGV 257 (392)
T ss_dssp --TTEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTT
T ss_pred --cCeEEEEEeCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEEEEchhhhCCh
Confidence 47899999997 999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+.. ..++++|+.|+++++++.++|+.++++++.+++.++.+++.+.| .+. ..+
T Consensus 258 ~~~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L----~~~--~~~ 325 (392)
T 3ruy_A 258 FPISCAAANRDILGVFEP------GSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQL----KEI--DNP 325 (392)
T ss_dssp SCCEEEEECHHHHTTCCT------TSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH----TTC--CCT
T ss_pred hhhEEEEECHHHHhhhcc------CCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHh--cCC
Confidence 899999999999887754 24678999999999999999998865555555555555554422 211 236
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.+..+++.|.++.+.+..+ ...+.+.|+++||++++.+ +.+|+.|++.+|++++++++++|++++
T Consensus 326 ~~~~~~~~g~~~~~~~~~~----------~~~l~~~l~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 326 MITEVRGKGLFIGIELNEP----------ARPYCEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp TEEEEEEETTEEEEEESSC----------SHHHHHHHHTTTEECCCBTTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CceEEEeeeeEEEEEEcch----------HHHHHHHHHHCCcEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 6788899999999997542 3568889999999999875 899999999999999999999998876
No 35
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=100.00 E-value=6.1e-42 Score=385.71 Aligned_cols=379 Identities=25% Similarity=0.295 Sum_probs=306.3
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
+.++++ |+|+++||.+|+ +|+|+.+++|++++|| +||+|.+|+.++++++.+.. ..+.++...+|+++|+++
T Consensus 22 ~~~~~~--~~g~~~~~~~g~----~~lD~~~~~~~~~lg~-~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~ 93 (406)
T 4adb_A 22 PFIPVR--GEGSRLWDQQGK----EYIDFAGGIAVNALGH-AHPELREALNEQASKFWHTG-NGYTNEPVLRLAKKLIDA 93 (406)
T ss_dssp SSCEEE--EEBTEEEETTCC----EEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCSCCC-TTSCCHHHHHHHHHHHHH
T ss_pred CceEEe--eccCEEEeCCCC----EEEECCCchhhcccCC-CCHHHHHHHHHHHHhccccc-CCcCCHHHHHHHHHHHhh
Confidence 345555 788999999999 9999999999999999 89999999999999876543 346778899999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
.+ .++++|++||++|++.|+++++ .++..+|.+ | +.+||+.+.+|||.+..++.+++...+...
T Consensus 94 ~~---~~~v~~~~gg~~a~~~al~~~~-~~~~~~~~~-g-----------~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~ 157 (406)
T 4adb_A 94 TF---ADRVFFCNSGAEANEAALKLAR-KFAHDRYGS-H-----------KSGIVAFKNAFHGRTLFTVSAGGQPAYSQD 157 (406)
T ss_dssp SS---CSEEEEESSHHHHHHHHHHHHH-HHHHHHTCT-T-----------CCEEEEETTCCCCSSHHHHHHSSCGGGTGG
T ss_pred CC---CCeEEEeCcHHHHHHHHHHHHH-HHHHhcCCC-C-----------CcEEEEECCCcCCCcHHHhhccCCcccccc
Confidence 87 4699999999999999999884 454444432 3 268999999999999988888765443211
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+ .+.. .++..++++ | .+.+++.+
T Consensus 158 ~------------~~~~----~~~~~~~~~--------------------------d--------~~~l~~~l------- 180 (406)
T 4adb_A 158 F------------APLP----ADIRHAAYN--------------------------D--------INSASALI------- 180 (406)
T ss_dssp G------------CSCC----SSEEEECTT--------------------------C--------HHHHHTTC-------
T ss_pred C------------CCCC----CCceEeCCC--------------------------c--------HHHHHHHh-------
Confidence 0 0000 111122211 1 13344333
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
.+++++|++||+ ++.||+++++.+++++|.++|++||++||+||+|+|||++|..++.+.+++.||++||||++++|
T Consensus 181 -~~~~~~v~~~p~-np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~t~sK~~~~G- 257 (406)
T 4adb_A 181 -DDSTCAVIVEPI-QGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGG- 257 (406)
T ss_dssp -STTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTT-
T ss_pred -cCCeEEEEEeCC-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEEEechhhcCC-
Confidence 157899999997 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+... .+++||++++++++++.++|+.++++++.++++++.+++.+.+ .+....++
T Consensus 258 ~r~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l----~~~~~~~~ 327 (406)
T 4adb_A 258 FPVGALLATEECARVMTVG------THGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERL----NTINHRYG 327 (406)
T ss_dssp SCCEEEEECHHHHHTCCTT------SSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHH----HHHHHHHC
T ss_pred CCeEEEEEcHHHHhhhccC------CcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHHhCC
Confidence 8999999999999887642 4678999999999999999999877766777777666666654 33434456
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.+.++++.|.++.+++.... ......+.+.|+++||++.+.+ +.+|+.|++.++++++++++++|+++++++.
T Consensus 328 ~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 401 (406)
T 4adb_A 328 LFSEVRGLGLLIGCVLNADY------AGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDRFAAACEHFV 401 (406)
T ss_dssp CEEEEEEETTEEEEEECTTT------TTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEEEEEEeCCc------HHHHHHHHHHHHHCCcEEeecCCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999997531 0025678999999999999875 8999999999999999999999999998764
No 36
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=100.00 E-value=2.6e-41 Score=383.30 Aligned_cols=414 Identities=24% Similarity=0.334 Sum_probs=313.1
Q ss_pred hhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhc
Q 002941 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~ 432 (863)
+.+++.+++|++++. ..|.++.+ |+|+++||.+|+ +|+|+.++.|+.++|| .+|+|.+|+.++++++
T Consensus 7 ~~~~~~~~~~~~~~~------~~~~~~~~--~~g~~~~d~~g~----~~id~~~~~~~~~lg~-~~~~v~~a~~~~~~~~ 73 (426)
T 1sff_A 7 LMQRRSQAIPRGVGQ------IHPIFADR--AENCRVWDVEGR----EYLDFAGGIAVLNTGH-LHPKVVAAVEAQLKKL 73 (426)
T ss_dssp HHHHHHHHSCTTBCC------SEEEEEEE--EEBTEEEETTCC----EEEESSHHHHTCTTCB-TCHHHHHHHHHHTTTC
T ss_pred HHHHHHHhcCccccc------cCCceEEe--cccCEEEeCCCC----EEEEcccChhhcccCC-CCHHHHHHHHHHHHhC
Confidence 344555667766553 13566665 788999999999 9999999999999999 8999999999999886
Q ss_pred ccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEe
Q 002941 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (863)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~ 512 (863)
.+.....+.++...+|.++|+++++.+..++++|++||++|++.|+++| +.+. ++ .+||++
T Consensus 74 ~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a-~~~~-------~~-----------~~vi~~ 134 (426)
T 1sff_A 74 SHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA-RAAT-------KR-----------SGTIAF 134 (426)
T ss_dssp SCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHH-HHHH-------TC-----------CEEEEE
T ss_pred CCccccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHH-HHhh-------CC-----------CeEEEE
Confidence 5543233567888999999999984321278999999999999999987 4441 21 479999
Q ss_pred cCCCccCccccceecCCC-CCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhccc
Q 002941 513 KGSYHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (863)
Q Consensus 513 ~~sYHG~t~gals~t~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (863)
+.+|||.+..++.+++.. .|+. .+++. ..++..++++.+++ +
T Consensus 135 ~p~y~~~~~~~~~~~g~~~~~~~--------~~~~~--------~~~v~~v~~~~~~~---------------------~ 177 (426)
T 1sff_A 135 SGAYHGRTHYTLALTGKVNPYSA--------GMGLM--------PGHVYRALYPCPLH---------------------G 177 (426)
T ss_dssp TTCCCCSSHHHHHHSSCCTTTTT--------TSCCC--------CSSEEEECCCBGGG---------------------T
T ss_pred CCCcCCCchHhhhhcCCcccccc--------ccCCC--------CCCcEEeCCCcccc---------------------c
Confidence 999999998877776532 2221 11110 01233444442210 0
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC
Q 002941 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (863)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~ 671 (863)
+ . .....+.+++.+++. .++.++++|++||+ ++++|.++++++++++|.++|++||++||+||+|+|||++|.
T Consensus 178 ~--~-~~~d~~~l~~~l~~~---~~~~~~~~v~~~p~-~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~ 250 (426)
T 1sff_A 178 I--S-EDDAIASIHRIFKND---AAPEDIAAIVIEPV-QGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT 250 (426)
T ss_dssp B--C-HHHHHHHHHHHHHHT---CCGGGEEEEEECSB-CTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS
T ss_pred c--c-hHHHHHHHHHHHHhc---cCCCceEEEEEecc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccc
Confidence 0 0 001135566666531 12357899999998 777998999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHh
Q 002941 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN 751 (863)
Q Consensus 672 ~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~ 751 (863)
+++++.+++.||+++|||++++| +|+|++++++++++.+... .+.+|+++||++++++.++|+.++++++.++
T Consensus 251 ~~~~~~~~~~~di~s~sK~~~~G-lriG~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~ 323 (426)
T 1sff_A 251 LFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPG------GLGGTYAGNPIACVAALEVLKVFEQENLLQK 323 (426)
T ss_dssp SSGGGGTTSCCSEEEECGGGGTS-SCCEEEEEEHHHHTTSCTT------SBCCSSSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hhhhhhcCCCCCEEEEcccccCC-CceEEEEEcHHHHhhhccC------CcCcCCCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 88888899999999999999999 8999999999998877531 3668999999999999999999876666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEE
Q 002941 752 IIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYL 828 (863)
Q Consensus 752 l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~ 828 (863)
+.++.+++.+.+ .++...++.+..+++.|.++.+++........+.......+.+.|+++||++.+.+ +.+|+
T Consensus 324 ~~~~~~~l~~~l----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~iRi 399 (426)
T 1sff_A 324 ANDLGQKLKDGL----LAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRI 399 (426)
T ss_dssp HHHHHHHHHHHH----HHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEE
T ss_pred HHHHHHHHHHHH----HHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCCCCEEEE
Confidence 766666666544 34444567777788889999999964210000112245678899999999999864 88999
Q ss_pred ecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 829 MCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 829 ~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.+++.++++++++++++|+++++++
T Consensus 400 ~~~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 400 LVPLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ECCccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988765
No 37
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=100.00 E-value=8.9e-39 Score=359.77 Aligned_cols=374 Identities=20% Similarity=0.269 Sum_probs=291.3
Q ss_pred CeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHh
Q 002941 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (863)
Q Consensus 375 ~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (863)
.|.++.+ |+|+++||.+|+ +|+|+.+++|++++|| ++|+|.+|+.++++++.+.. ..+.++...+|+++|++
T Consensus 22 ~~~~~~~--~~g~~~~d~~g~----~~ld~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~ 93 (397)
T 2ord_A 22 FPATFVY--GKGSWIYDEKGN----AYLDFTSGIAVNVLGH-SHPRLVEAIKDQAEKLIHCS-NLFWNRPQMELAELLSK 93 (397)
T ss_dssp CSCEEEE--EEBTEEEETTCC----EEEESSHHHHTCTTCB-TCHHHHHHHHHHHHHCSCCC-TTSEEHHHHHHHHHHHH
T ss_pred CCceEEe--eecCEEEECCCC----EEEECCccccccccCC-CCHHHHHHHHHHHHhcccCc-cccCCHHHHHHHHHHHH
Confidence 4556666 788999999999 9999999999999999 89999999999999876543 23456889999999999
Q ss_pred hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 455 ~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
+++ .++++|++||++|++.|++.+ +.++.. +. +| +.+||+++.+|||.+..++...+...++.
T Consensus 94 ~~g---~~~v~~~~gg~~a~~~al~~~-~~~~~~-~~-~~-----------~~~vi~~~~~yh~~~~~~~~~~g~~~~~~ 156 (397)
T 2ord_A 94 NTF---GGKVFFANTGTEANEAAIKIA-RKYGKK-KS-EK-----------KYRILSAHNSFHGRTLGSLTATGQPKYQK 156 (397)
T ss_dssp TTT---SCEEEEESSHHHHHHHHHHHH-HHHHHH-HC-TT-----------CCEEEEEBTCCCCSSHHHHHHSBCHHHHG
T ss_pred hcC---CCeEEEeCCHHHHHHHHHHHH-HHHhhc-CC-CC-----------CceEEEEcCCcCCCchhhhhccCChhhcc
Confidence 987 479999999999999999988 333221 11 12 25799999999999887666554221110
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
++.+.. .++..++. +| .+.+++.+.
T Consensus 157 --------~~~p~~--------~~~~~~~~--------------------------~d--------~~~l~~~l~----- 181 (397)
T 2ord_A 157 --------PFEPLV--------PGFEYFEF--------------------------NN--------VEDLRRKMS----- 181 (397)
T ss_dssp --------GGCSCC--------TTEEEECT--------------------------TC--------HHHHHHHCC-----
T ss_pred --------ccCCCC--------CCeeEecC--------------------------CC--------HHHHHHHhh-----
Confidence 000000 11111211 11 244555552
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
+++++|++||+ ++.+|.++++.+++++|.++|++||++||+||+|+||+++|..+..+.+++.||+++|||++++|
T Consensus 182 ---~~~~~v~~~~~-~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G 257 (397)
T 2ord_A 182 ---EDVCAVFLEPI-QGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTTAKGLGGG 257 (397)
T ss_dssp ---TTEEEEEECSE-ECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTT
T ss_pred ---cCeEEEEEecc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCeeeeccccCCC
Confidence 36899999997 99999988899999999999999999999999999999999888888889899999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|+++++++++ .+.. ..+..||++++++++++.++|+.++++++.+++.++.+++.+.| .+....+
T Consensus 258 -~r~G~~~~~~~~~-~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L----~~~~~~~ 325 (397)
T 2ord_A 258 -VPIGAVIVNERAN-VLEP------GDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKL----QEMKEEY 325 (397)
T ss_dssp -SCCEEEEECSTTC-CCCT------TSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH----HHHHHHC
T ss_pred -cCeEEEEEchHhc-ccCC------CCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 7999999998876 5532 13667899999999999999999876666666666666666544 3332346
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
+.+..+++.|.++.+++.... ...++.+.|+++||++.+.+ +.+|+.|++.++++++++++++|++++++
T Consensus 326 ~~~~~~~~~g~~~~~~~~~~~--------~~~~l~~~l~~~gi~v~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 326 DVVADVRGMGLMIGIQFREEV--------SNREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp TTEEEEEEETTEEEEEECTTS--------CHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred CceEEEEEEeEEEEEEECChH--------HHHHHHHHHHHCCCEEccCCCCEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence 766677889999999886431 25678889999999999974 79999999999999999999999988753
No 38
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=100.00 E-value=6.4e-36 Score=335.94 Aligned_cols=365 Identities=22% Similarity=0.291 Sum_probs=282.0
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
+.++.+ |+|+++||.+|+ .|+|+.++.|++++|| .+|+|.+|+.++++++.+.. ..+..+...+++++|+++
T Consensus 28 ~~~~~~--~~g~~~~d~~g~----~~ld~~~~~~~~~~g~-~~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~ 99 (395)
T 1vef_A 28 DLLIVR--GQGARVWDAEGN----EYIDCVGGYGVANLGH-GNPEVVEAVKRQAETLMAMP-QTLPTPMRGEFYRTLTAI 99 (395)
T ss_dssp SSCEEE--EEBTEEEETTSC----EEEESSHHHHTCTTCB-TCHHHHHHHHHHHHHCCCCC-TTSCCHHHHHHHHHHHHT
T ss_pred CccEEe--cccCEEEeCCCC----EEEEccCccccccCCC-CCHHHHHHHHHHHHhCCCCc-cccCCHHHHHHHHHHHHh
Confidence 345555 788999999998 9999999999999999 89999999999998876542 235678899999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
++.+ .+.++|++||++|++.|++.+ +.+. + +.+||+++.+|||.+..++...+...++
T Consensus 100 ~~~~-~~~v~~~~gg~~a~~~al~~~-~~~~-------~-----------~~~vi~~~~~y~~~~~~~~~~~g~~~~~-- 157 (395)
T 1vef_A 100 LPPE-LNRVFPVNSGTEANEAALKFA-RAHT-------G-----------RKKFVAAMRGFSGRTMGSLSVTWEPKYR-- 157 (395)
T ss_dssp SCTT-EEEEEEESSHHHHHHHHHHHH-HHHH-------S-----------CCEEEEETTCCCCSSHHHHHTCCCHHHH--
T ss_pred cCCC-cCEEEEcCcHHHHHHHHHHHH-HHHh-------C-----------CCeEEEEcCCcCCCchhhhhhcCCcccc--
Confidence 8643 478999999999999999987 3331 1 1579999999999987666554321100
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
.+ +. |.. .++..++. .| .+.+++.+.
T Consensus 158 ------~~---~~--p~~---~~~~~~~~--------------------------~d--------~~~l~~~i~------ 183 (395)
T 1vef_A 158 ------EP---FL--PLV---EPVEFIPY--------------------------ND--------VEALKRAVD------ 183 (395)
T ss_dssp ------GG---GC--SCS---SCEEEECT--------------------------TC--------HHHHHHHCC------
T ss_pred ------cc---cC--CCC---CCeeEeCC--------------------------Cc--------HHHHHHHhc------
Confidence 00 00 000 00111111 11 244555552
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++++|+++|+ ++..|.+.++++++++|.++|++||++||+||+|+|||++|..+.++.+++.||+++|+|++++|
T Consensus 184 --~~~~~v~~~~~-~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~g- 259 (395)
T 1vef_A 184 --EETAAVILEPV-QGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGG- 259 (395)
T ss_dssp --TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTT-
T ss_pred --cCEEEEEEeCc-cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEEEEcccccCC-
Confidence 35789999997 88899999999999999999999999999999999999999888888889999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+++|++++++++++.+... .+.+|++.++++++++.++|+.++++++.+++.++.+++.+.+ .+. ..+
T Consensus 260 ~~~G~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l----~~~--~~~ 327 (395)
T 1vef_A 260 VPLGVAVMREEVARSMPKG------GHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKL----RAI--PSP 327 (395)
T ss_dssp SSCEEEEEEHHHHHTSCTT------SSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH----HTS--CCT
T ss_pred CceEEEEehHHHHhhhccC------CcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----HHh--hcC
Confidence 8999999999988877542 2567889999999999999998865555566665555555432 221 124
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.+..+++.|.++.+++..+ ...+.+.|. ++||++.+.+ +.+|+.+++.++++++++++++|++++
T Consensus 328 ~~~~~~~~g~~~~~~~~~~----------~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 328 KIREVRGMGLMVGLELKEK----------AAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp TEEEEEEETTEEEEEESSC----------SHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEEEEEEEcCh----------HHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 4556778899999988632 346788888 9999999874 899999888999999999999998875
No 39
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=2.6e-34 Score=319.97 Aligned_cols=364 Identities=20% Similarity=0.279 Sum_probs=276.6
Q ss_pred CeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHh
Q 002941 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (863)
Q Consensus 375 ~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (863)
.|.++.+ |+|.++||.+|+ .|+|+.++.+++.+|| .+|++.+|+.++++++.+.. ..+.++...+|.++|++
T Consensus 10 ~~~~~~~--~~g~~~~~~~g~----~~ld~~~~~~~~~~g~-~~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~l~~~la~ 81 (375)
T 2eh6_A 10 LPVKFVR--GKGVYLYDEEGK----EYLDFVSGIGVNSLGH-AYPKLTEALKEQVEKLLHVS-NLYENPWQEELAHKLVK 81 (375)
T ss_dssp EEEEEEE--EEBTEEEETTCC----EEEESSHHHHTCTTCB-SCHHHHHHHHHHHHHCSCCC-TTBCCHHHHHHHHHHHH
T ss_pred CCccEEe--eecCEEEeCCCC----EEEEcCCcccccccCC-CCHHHHHHHHHHHHhccccC-cccCCHHHHHHHHHHHh
Confidence 4556665 788999999998 9999999998889998 79999999999998865432 24556778899999999
Q ss_pred hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 455 ~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
+++. .+.++|++||++|++.+++++ +.+.. ++. +|| .+||+.+.+|||....++..++...++.
T Consensus 82 ~~g~--~~~v~~~~g~t~a~~~~~~~~-~~~~~-~~~-~g~-----------~~vl~~~~~y~~~~~~~~~~~~~~~~~~ 145 (375)
T 2eh6_A 82 HFWT--EGKVFFANSGTESVEAAIKLA-RKYWR-DKG-KNK-----------WKFISFENSFHGRTYGSLSATGQPKFHK 145 (375)
T ss_dssp TSSS--CEEEEEESSHHHHHHHHHHHH-HHHHH-HTT-CCC-----------CEEEEEBTCCCCSSHHHHHHCBCGGGTT
T ss_pred hcCC--CCeEEEeCchHHHHHHHHHHH-HHHhc-cCC-CCC-----------CEEEEECCCcCCCchhhhhhcCCccccC
Confidence 9873 178999999999999999986 43421 111 132 6799999999999887776654332110
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
+..+. . .++..++.+ | .+.+++.+.
T Consensus 146 --------~~~~~-~-------~~~~~~~~~--------------------------d--------~~~l~~~l~----- 170 (375)
T 2eh6_A 146 --------GFEPL-V-------PGFSYAKLN--------------------------D--------IDSVYKLLD----- 170 (375)
T ss_dssp --------TTCSC-C-------SSEEEECTT--------------------------C--------HHHHHTTCC-----
T ss_pred --------CCCCC-C-------CCceeCCCc--------------------------h--------HHHHHHHhc-----
Confidence 00000 0 011111111 1 133433331
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
+++.+|+++|+ ++.+|.+.++++++++|.++|++||++||+||+|+|||++|..+..+.+|..||+++|||.+++|
T Consensus 171 ---~~~~~v~~~~~-~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s~SK~~~~g 246 (375)
T 2eh6_A 171 ---EETAGIIIEVI-QGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALAKGLGGG 246 (375)
T ss_dssp ---TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTT
T ss_pred ---CCeEEEEEeCc-cCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEEEEcccccCC
Confidence 36889999997 99999999999999999999999999999999999999998777778888889999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+++|++++++++++.+... .++.+++.++++++++.++|+.++ ++.+++.++.+++.+.| . +.
T Consensus 247 -~~~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L----~----~~ 309 (375)
T 2eh6_A 247 -VPIGAILAREEVAQSFTPG------SHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKL----K----EL 309 (375)
T ss_dssp -SCCEEEEEEHHHHTTCCTT------SCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH----H----HT
T ss_pred -CCeEEEEEcHHHHhhhcCC------CCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH----H----HH
Confidence 8999999999988876541 256788899999999999999775 44555555555544432 2 22
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
+. ..+++.|.++.+++..+ ..++++.|+++||++.+. .+.+|+.++..++++++++++++|+++
T Consensus 310 ~~-~~~~~~g~~~~~~~~~~----------~~~~~~~l~~~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 310 GK-GKVKGRGLMLGLELERE----------CKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp TS-SEEEEETTEEEEECSSC----------CHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred hc-CCceEEEEEEEEEEcCc----------HHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 32 34567899999988532 346788889999999986 489999998899999999999999875
No 40
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=100.00 E-value=4.4e-33 Score=295.34 Aligned_cols=192 Identities=22% Similarity=0.245 Sum_probs=162.0
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCC-CCchhHHHhhccccccccCCCccccccc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH-DSDSRFLFTKLPSLSLRRNFPSSLILSN 114 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (863)
.|++|||+||+|++|||+||++|+++|+ ++|++|+|||||++|+.. +.|..++.+. .++.
T Consensus 25 ~m~~i~Itgt~t~vGKT~vt~gL~~~l~-----~~G~~V~~fKPv~~g~~~~~~D~~~~~~~-~g~~------------- 85 (251)
T 3fgn_A 25 HMTILVVTGTGTGVGKTVVCAALASAAR-----QAGIDVAVCKPVQTGTARGDDDLAEVGRL-AGVT------------- 85 (251)
T ss_dssp SCEEEEEEESSTTSCHHHHHHHHHHHHH-----HTTCCEEEEEEEECCGGGTCCHHHHHHHH-HCCC-------------
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCeEEEEeeeecCCCCCCHHHHHHHHH-cCCC-------------
Confidence 4788999999999999999999999999 999999999999999743 4565555443 2220
Q ss_pred hhhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCC-CCC
Q 002941 115 SILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGG-VVG 193 (863)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~-~~~ 193 (863)
...++|.|+.|.+|+.+++++ +. .++
T Consensus 86 ----------------------------------------------------~~~~~~~~~~p~sP~~aa~~~-~~~~~~ 112 (251)
T 3fgn_A 86 ----------------------------------------------------QLAGLARYPQPMAPAAAAEHA-GMALPA 112 (251)
T ss_dssp ----------------------------------------------------EEEEEEECSSSSCHHHHHHHT-TCCCCC
T ss_pred ----------------------------------------------------CCCCCeeECCCCChHHHHHHc-CCCCCC
Confidence 114689999999999999998 77 688
Q ss_pred hhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCC-CcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHH
Q 002941 194 DSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSG-SLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (863)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~-~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (863)
.+.+.+.+.++.+++ |++||||+||+++|++.. .+++|+|+.+++|||||++.++|++++++++++
T Consensus 113 ~~~i~~~~~~l~~~~-------------D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~ 179 (251)
T 3fgn_A 113 RDQIVRLIADLDRPG-------------RLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLE 179 (251)
T ss_dssp HHHHHHHHHTTCCTT-------------CEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-------------CEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHH
Confidence 999999988876665 999999999999998665 799999999999999999999999999999999
Q ss_pred HHHhCCCcEEEEEEcCCCC-C------CHHHHHHhhcCCCCeee-cCCCCCC
Q 002941 273 SLKLRGYDVVAVVFEDHGL-V------NEVPLMSYLRNRVPVLV-LPPLPQD 316 (863)
Q Consensus 273 ~~~~~~~~v~gvi~n~~~~-~------~~~~~~~~~~~~~pvl~-~p~~~~~ 316 (863)
+++.+|++|+|||+|++.. . +.+.|+++ +|||| ||+....
T Consensus 180 ~l~~~g~~i~GvIlN~v~~~~~~~~~~~~~~le~~----vpvLG~iP~~~~~ 227 (251)
T 3fgn_A 180 ALAAQQVSCAGLVIGSWPDPPGLVAASNRSALARI----AMVRAALPAGAAS 227 (251)
T ss_dssp HHHHTTCCEEEEEEEEECSSCCHHHHHHHHHHHHH----SCEEEEEETTGGG
T ss_pred HHHhCCCCEEEEEEECCCCchhhhhhhHHHHHHHh----CCEEEEeeCCCCc
Confidence 9999999999999999842 2 22333333 99999 9997653
No 41
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=100.00 E-value=1.4e-32 Score=289.88 Aligned_cols=194 Identities=22% Similarity=0.266 Sum_probs=158.4
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCC----CCchhHHHhhccccccccCCCcccc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH----DSDSRFLFTKLPSLSLRRNFPSSLI 111 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (863)
++++|||+||+|+||||+||++|+++|+ ++|++|+|||||++|+.. +.|..++.+....+
T Consensus 20 m~k~i~ItgT~t~vGKT~vs~gL~~~L~-----~~G~~V~~fKPv~~g~~~~~~~~~D~~~~~~~~~~~----------- 83 (242)
T 3qxc_A 20 QGHMLFISATNTNAGKTTCARLLAQYCN-----ACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLL----------- 83 (242)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHH-----HTTCCEEEECCEECSCCTTTCCCSHHHHHHHHHHTT-----------
T ss_pred cCcEEEEEeCCCCCcHHHHHHHHHHHHH-----hCCCceEEEeeeecCCcccCCCCchHHHHHHHHHHH-----------
Confidence 4678999999999999999999999999 999999999999999863 44554442211111
Q ss_pred ccchhhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCC-
Q 002941 112 LSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGG- 190 (863)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~- 190 (863)
. .+++ ....+||.|+.|.+|+.+++.+ +.
T Consensus 84 -----------------~-~g~~-------------------------------~~~~~p~~~~~p~sp~~aa~~~-g~~ 113 (242)
T 3qxc_A 84 -----------------D-RSLT-------------------------------LKDISFYRYHKVSAPLIAQQEE-DPN 113 (242)
T ss_dssp -----------------C-TTCC-------------------------------HHHHCCEECSSSSCHHHHHHHH-CTT
T ss_pred -----------------h-CCCC-------------------------------hHHeeeEEECCCCChHHHHHHc-CCC
Confidence 0 0000 0226799999999999999999 87
Q ss_pred -CCChhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHH
Q 002941 191 -VVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTIS 269 (863)
Q Consensus 191 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~ 269 (863)
.++.++|.+.+.++.+++ |++||||+||+++|+..+.+++|+|+.+++|||||++.++|++|++++
T Consensus 114 ~~i~~~~I~~~~~~l~~~~-------------D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~~lg~i~~~~l 180 (242)
T 3qxc_A 114 APIDTDNLTQRLHNFTKTY-------------DLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLL 180 (242)
T ss_dssp CCCCHHHHHHHHHHGGGTC-------------SEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECCSTTHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhcC-------------CEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcCCCcHHHHHHH
Confidence 789999999999987776 999999999999999888999999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEEEcCCCCCC------HHHHHHhhc-CCCCeee
Q 002941 270 AYESLKLRGYDVVAVVFEDHGLVN------EVPLMSYLR-NRVPVLV 309 (863)
Q Consensus 270 ~~~~~~~~~~~v~gvi~n~~~~~~------~~~~~~~~~-~~~pvl~ 309 (863)
++++++++|++ .|||+|++..+. ..+|+++.. ...|++.
T Consensus 181 t~~~l~~~g~~-~GvIlN~v~~~~~~~~~~~p~le~~~~~~~~~~~~ 226 (242)
T 3qxc_A 181 NDFLLKSHQLD-YKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVI 226 (242)
T ss_dssp HHHHHHTSSSC-EEEEECCCTTCCHHHHHTHHHHHHHHHHCSSCCEE
T ss_pred HHHHHHhCCCC-EEEEEeCCCCccchhhhhHHHHHHhcCcccCCcee
Confidence 99999999999 999999995543 334444432 1456665
No 42
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=99.98 E-value=2.5e-32 Score=286.21 Aligned_cols=209 Identities=19% Similarity=0.238 Sum_probs=166.4
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccCCCccccccch
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNS 115 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (863)
+|++|||+||+|++|||+||++|+++|+ ++|++|+|||||++|+...++. +
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~-----~~G~~V~~~KPv~~g~~~~~~~---------~--------------- 53 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCE-----HQNIKSLCLKPVASGQSQFSEL---------C--------------- 53 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHH-----HTTCCEEEECSEEESBCSSSSS---------B---------------
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHH-----HCCCeeEEecceeecCccCCCC---------C---------------
Confidence 4789999999999999999999999999 9999999999999997653321 0
Q ss_pred hhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCChh
Q 002941 116 ILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDS 195 (863)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~ 195 (863)
..+|+.. .+++.+.+ ....++|.|+.|.|||.+++.+ +..++.+
T Consensus 54 --~~~D~~~--~~~~~~~~-------------------------------~~~~~~~~~~~p~sp~~aa~~~-~~~i~~~ 97 (228)
T 3of5_A 54 --EDVESIL--NAYKHKFT-------------------------------AAEINLISFNQAVAPHIIAAKT-KVDISIE 97 (228)
T ss_dssp --HHHHHHH--HHTTTSSC-------------------------------HHHHCSEEESSSSCHHHHHHHT-TCCCCHH
T ss_pred --ChHHHHH--HhcCCCCC-------------------------------hhhEEEEEECCCCCHHHHHHHc-CCCCCHH
Confidence 0011111 11111111 1226799999999999999999 8888999
Q ss_pred HHHHHHHH-HHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHH
Q 002941 196 KVIETLGK-CLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (863)
Q Consensus 196 ~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~ 274 (863)
++.+.+.+ +.++| |++||||+||+++|+..+.+++|+|+.+++|||||++.++|++++++.+++.+
T Consensus 98 ~i~~~~~~~l~~~~-------------D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~~~~~~~l 164 (228)
T 3of5_A 98 NLKQFIEDKYNQDL-------------DILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINEL 164 (228)
T ss_dssp HHHHHHHGGGGSSC-------------SEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC-------------CEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHH
Confidence 99999988 66665 99999999999999988889999999999999999999999999999999999
Q ss_pred HhCCCcEEEEEEcCCCCC--CHHHHHHhhc--CCCCeee-cCCCCCCCchhhhhhhhh
Q 002941 275 KLRGYDVVAVVFEDHGLV--NEVPLMSYLR--NRVPVLV-LPPLPQDSSNDLMEWFDE 327 (863)
Q Consensus 275 ~~~~~~v~gvi~n~~~~~--~~~~~~~~~~--~~~pvl~-~p~~~~~~~~~~~~~l~~ 327 (863)
+.+|+++.|||+|++..+ ......+.++ .++|||| || ...++..|++.
T Consensus 165 ~~~~~~i~GvIlN~~~~~~~~~~~~~~~l~~~~g~pvLG~iP-----~~~~~~~~~~~ 217 (228)
T 3of5_A 165 NRHNIKLAGWIANCNDSNIKYIDEQINTIEELSGYKCSAKIS-----RNADYLDFIDL 217 (228)
T ss_dssp HHTTCCEEEEEEEECCTTCSCHHHHHHHHHHHHSCCCSEEEE-----SSCCHHHHHHH
T ss_pred HhCCCcEEEEEEECcCCcchhhHHHHHHHHHhhCCCEEEECC-----CchHhhhhcCH
Confidence 999999999999998443 2233333332 4899999 99 22355666654
No 43
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.97 E-value=3.8e-30 Score=292.31 Aligned_cols=355 Identities=12% Similarity=0.052 Sum_probs=253.4
Q ss_pred ecccceEEEEcC--CCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC
Q 002941 382 RCGENFSVYQDQ--KNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG 459 (863)
Q Consensus 382 ~~G~G~~v~D~d--G~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~ 459 (863)
++|+|+++||.+ |+ +|||+..+ ...++ .+|+|++|+.+++++..+.. .....+...++++.|.+..+.+
T Consensus 46 ~~g~g~~~~d~~~~g~----~~i~~~~~--~~~~~--~~~~v~~a~~~~~~~~~~~y-~~~~~~l~~~l~~~l~~~~g~~ 116 (421)
T 3l8a_A 46 RLNQFTYKWKTSENNP----ELLQMWVA--DMDFL--PVPEIKEAIINYGREHIFGY-NYFNDDLYQAVIDWERKEHDYA 116 (421)
T ss_dssp CTTTTBTTTGGGTTCT----TCEECCSS--CCCSC--CCHHHHHHHHHHHHHCCSSC-BCCCHHHHHHHHHHHHHHHCCC
T ss_pred cCCCCCccccccCCCC----CeeecccC--CCCCC--CCHHHHHHHHHHHhcCCcCC-CCCCHHHHHHHHHHHHHHhCCC
Confidence 358999999999 77 89999654 33343 68999999999998743322 1223566777888888766511
Q ss_pred -CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcC
Q 002941 460 -WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538 (863)
Q Consensus 460 -~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~ 538 (863)
..++++|+++|+||++.|++.+.+ .| .+||+...+||+....+...+..
T Consensus 117 ~~~~~v~~~~g~~ea~~~a~~~~~~---------~g------------d~Vi~~~~~y~~~~~~~~~~g~~--------- 166 (421)
T 3l8a_A 117 VVKEDILFIDGVVPAISIALQAFSE---------KG------------DAVLINSPVYYPFARTIRLNDHR--------- 166 (421)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHSC---------TE------------EEEEEEESCCHHHHHHHHHTTEE---------
T ss_pred CCHHHEEEcCCHHHHHHHHHHHhcC---------CC------------CEEEECCCCcHHHHHHHHHCCCE---------
Confidence 146899999999999999998721 12 57999999999976544332110
Q ss_pred CcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCC
Q 002941 539 PWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618 (863)
Q Consensus 539 ~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~ 618 (863)
+..+++... ...| ..| .+.+++.+.+ .
T Consensus 167 --------------------~~~~~~~~~----------------~~~~--~~d--------~~~le~~i~~-------~ 193 (421)
T 3l8a_A 167 --------------------LVENSLQII----------------NGRF--EID--------FEQLEKDIID-------N 193 (421)
T ss_dssp --------------------EEEEECEEE----------------TTEE--ECC--------HHHHHHHHHH-------T
T ss_pred --------------------EEecccccc----------------CCCe--eeC--------HHHHHHHhhc-------c
Confidence 001111000 0000 012 2456677742 3
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hh-----hhcCCCCcEEEeccccC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TA-----DLLGCVPDIACYGKLLT 692 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~-----e~~gv~PDivt~sKgLg 692 (863)
++++|+++++ ++++| .+++++++++|+++|++||++||+||||++|+++|..+ .+ +..+..+++.+++|+++
T Consensus 194 ~~~~vil~~p-~nptG-~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g 271 (421)
T 3l8a_A 194 NVKIYLLCSP-HNPGG-RVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFN 271 (421)
T ss_dssp TEEEEEEESS-BTTTT-BCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHT
T ss_pred CCeEEEECCC-CCCCC-CcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhcc
Confidence 6788999987 99999 66788889999999999999999999999999998522 11 23456677889999998
Q ss_pred -CCCCCceeeecc-HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 002941 693 -GGVIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (863)
Q Consensus 693 -gG~~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~ 770 (863)
+| +|+|+++++ +++++.+.... .+..++++|+++++++.++|+. .+++.+++.+..+.+++.+.+.+
T Consensus 272 ~~G-~~~G~~~~~~~~l~~~~~~~~-----~~~~~~~~n~~~~~a~~aal~~--~~~~~~~~~~~~~~~~~~l~~~L--- 340 (421)
T 3l8a_A 272 IAG-TKNSFAIIQNESLRRKFQYRQ-----LANNQHEVPTVGMIATQAAFQY--GKPWLEELKTVIEGNIKLVIKEL--- 340 (421)
T ss_dssp CGG-GCCEEEECCSHHHHHHHHHHH-----HHTTCSCCCHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred Cch-hheEeEEcCCHHHHHHHHHHH-----HhcccCCCCHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHH---
Confidence 78 899999998 89998876421 1334568999999999999985 34566777777777777665443
Q ss_pred HhcCCCeeEecccceEEE-EEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-------CCEEEEecCCCCcHHHHHH
Q 002941 771 ISSHRTVQRVVALGTLCA-IELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQ 841 (863)
Q Consensus 771 ~~~~p~v~~vrg~Gl~~~-iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-------g~~lr~~ppl~~t~eeid~ 841 (863)
+++|.+..+++.|.++. +++..... ....+.+.|++ +||++.++ .+.+|+.++ +++++|++
T Consensus 341 -~~~~~i~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~~ 410 (421)
T 3l8a_A 341 -EAKTKIKVMEPEGTYLVWLDFSAYAI-------AQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA--TPKNTVQE 410 (421)
T ss_dssp -HHHCSCEEECCSBSSEEEEECGGGTC-------CTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC--SCHHHHHH
T ss_pred -HhCCCceEeCCCeeEEEEEeccccCC-------CHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec--CCHHHHHH
Confidence 33366777888888777 88864210 13457788875 59999873 388999866 68999999
Q ss_pred HHHHHHHHHH
Q 002941 842 LLLKLYQRLE 851 (863)
Q Consensus 842 ~v~~L~~~l~ 851 (863)
++++|.++++
T Consensus 411 ~l~~l~~~l~ 420 (421)
T 3l8a_A 411 ALSRIISVFG 420 (421)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 44
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.97 E-value=4e-29 Score=284.76 Aligned_cols=343 Identities=12% Similarity=0.050 Sum_probs=252.2
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHhhcCCC
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKG 459 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~p~~ 459 (863)
++|++++| ||+ +|+|+.++ .++|++.+|+|.+|+.+++++++... ...+.++...+|+++|+++++
T Consensus 54 ~~g~~~~~-~g~----~~id~~~~---~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g-- 123 (427)
T 2w8t_A 54 KSPTEAVI-RGK----DTILLGTY---NYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYG-- 123 (427)
T ss_dssp EETTEEEE-TTE----EEEECSCC---CTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHT--
T ss_pred CCCceEee-CCc----eEEEEECc---ccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhC--
Confidence 68899999 998 99999986 36884479999999999998865321 112246888999999999997
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~ 539 (863)
.+.+++++||++|++.+++... ++ .+.|.+...+|++...++...+..
T Consensus 124 -~~~~i~~~sGs~a~~~al~~l~-----------~~-----------gd~vl~~~~~h~~~~~~~~~~g~~--------- 171 (427)
T 2w8t_A 124 -TTGAIVFSTGYMANLGIISTLA-----------GK-----------GEYVILDADSHASIYDGCQQGNAE--------- 171 (427)
T ss_dssp -CSEEEEESCHHHHHHHHHHHHS-----------CT-----------TCEEEEETTCCHHHHHHHHHSCSE---------
T ss_pred -CCceEEecCcHHHHHHHHHHhc-----------CC-----------CCEEEECCcccHHHHHHHHHcCCe---------
Confidence 4688999999999999988651 22 345666777888776655443210
Q ss_pred cccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 002941 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (863)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~ 619 (863)
.+.+|. +| .+.+++.+++ ...++
T Consensus 172 ---------------------~~~~~~------------------------~d--------~~~le~~l~~----~~~~~ 194 (427)
T 2w8t_A 172 ---------------------IVRFRH------------------------NS--------VEDLDKRLGR----LPKEP 194 (427)
T ss_dssp ---------------------EEEECT------------------------TC--------HHHHHHHHHT----SCSSS
T ss_pred ---------------------eEEeCC------------------------CC--------HHHHHHHHHh----ccCCC
Confidence 011110 12 2456677753 11237
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccc--cccCCcchhhhcCCCCc----EEEeccccCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF--WRLGVETTADLLGCVPD----IACYGKLLTG 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGf--GRtG~~~a~e~~gv~PD----ivt~sKgLgg 693 (863)
+++|++||+ +++.|.+.+ +++|+++|++||++||+||+|+++ +++|.+ ..+++++.|| +.+++|+++
T Consensus 195 ~~~v~~~~~-~n~tG~~~~----l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~-~~~~~~~~~~~di~~~s~sK~~g- 267 (427)
T 2w8t_A 195 AKLVVLEGV-YSMLGDIAP----LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRG-VYEAQGLEGQIDFVVGTFSKSVG- 267 (427)
T ss_dssp CEEEEEESE-ETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC-HHHHTTCTTCCSEEEEESSSTTC-
T ss_pred CeEEEEcCC-CCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc-hHhhcCCCcCCcEEEecchhhhc-
Confidence 899999998 999998876 999999999999999999999864 333443 5667888777 678999996
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
+|.|++++++++++.+....+ .+.+|++.+|++++++.++|+.+++ +++.+++.++.+++.+.| .+.
T Consensus 268 --~~gG~v~~~~~l~~~l~~~~~----~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L----~~~-- 335 (427)
T 2w8t_A 268 --TVGGFVVSNHPKFEAVRLACR----PYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGL----KAM-- 335 (427)
T ss_dssp --SCCEEEEECCTTGGGGGGTCH----HHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH----HHH--
T ss_pred --cCCCEEEeCHHHHHHHHHhcc----cccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH----HHc--
Confidence 567899999999988875321 1345778999999999999999865 555666666666665544 332
Q ss_pred cCCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--------CEEEEecCCCCcHHHHHHHH
Q 002941 773 SHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--------NVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 773 ~~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--------~~lr~~ppl~~t~eeid~~v 843 (863)
..+.+ ..+ .|.++.+.+.+. .....+.+.|+++||++.+.. +.+|+.++..++++++++++
T Consensus 336 g~~~~--~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~ 405 (427)
T 2w8t_A 336 GFRLG--TETCDSAIVAVMLEDQ--------EQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVL 405 (427)
T ss_dssp TCEES--CSSCCSSEEEEEESSH--------HHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHH
T ss_pred CCccc--CCCCCCCEEEEEECCH--------HHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHH
Confidence 22211 133 678888888532 236778999999999998752 58999999889999999999
Q ss_pred HHHHHHHHHHH
Q 002941 844 LKLYQRLEEFD 854 (863)
Q Consensus 844 ~~L~~~l~~l~ 854 (863)
++|+++++++.
T Consensus 406 ~~l~~~l~~~~ 416 (427)
T 2w8t_A 406 GMFQAAGRAVG 416 (427)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999987654
No 45
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.96 E-value=3.5e-27 Score=264.04 Aligned_cols=346 Identities=12% Similarity=0.105 Sum_probs=246.5
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccC----CCCCChHHHHHHHHHHhhcCCC
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKG 459 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~----~~~~~~~~~eLae~L~~~~p~~ 459 (863)
|+|.+++| +|+ +|+|+.++ +++|++.+|++.+++.++++++.+... ....++...+|.++|+++++.
T Consensus 33 ~~g~~v~~-~g~----~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~- 103 (399)
T 3tqx_A 33 PQNAEIKV-GEK----EVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGT- 103 (399)
T ss_dssp CSSSEEEE-TTE----EEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTC-
T ss_pred CCCceEee-CCe----eEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCC-
Confidence 78899999 888 99999986 678843899999999999998764321 122456789999999999873
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~ 539 (863)
+..++++||++|++.+++... ++ .+.|.+...+|+....++...+..
T Consensus 104 --~~~i~~~sGt~a~~~~l~~~~-----------~~-----------gd~v~~~~~~~~~~~~~~~~~g~~--------- 150 (399)
T 3tqx_A 104 --DDTILYSSCFDANGGLFETLL-----------GP-----------EDAIISDELNHASIIDGIRLCKAQ--------- 150 (399)
T ss_dssp --SEEEEESCHHHHHHTTHHHHC-----------CT-----------TCEEEEETTCCHHHHHHHHSCCSE---------
T ss_pred --CcEEEECchHHHHHHHHHHhc-----------CC-----------CCEEEECCcccHHHHHHHHHcCCc---------
Confidence 568888899999999887652 21 345566677777766555443210
Q ss_pred cccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 002941 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (863)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~ 619 (863)
.+.+|. .|. +.+++.+++. ...+.+
T Consensus 151 ---------------------~~~~~~------------------------~d~--------~~l~~~l~~~--~~~~~~ 175 (399)
T 3tqx_A 151 ---------------------RYRYKN------------------------NAM--------GDLEAKLKEA--DEKGAR 175 (399)
T ss_dssp ---------------------EEEECT------------------------TCT--------THHHHHHHHH--HTTTCS
T ss_pred ---------------------eeEeCC------------------------CCH--------HHHHHHHHhh--hccCCC
Confidence 011110 011 1233444320 011236
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccc-ccc-cccCCcchhhhcCC--CCcEE--EeccccCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TGF-WRLGVETTADLLGC--VPDIA--CYGKLLTG 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~-TGf-GRtG~~~a~e~~gv--~PDiv--t~sKgLgg 693 (863)
+++|+++++ ++..|.+.+ +++|.++|++||+++|+||+| .|+ ++.|. +..+.+++ .+|++ +++|+++
T Consensus 176 ~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~~di~~~s~sK~~~- 248 (399)
T 3tqx_A 176 FKLIATDGV-FSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGR-GTPEYCGVADRVDILTGTLGKALG- 248 (399)
T ss_dssp SEEEEEESE-ETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSC-CHHHHHTCTTCCSEEEEESSSSSC-
T ss_pred ceEEEEeCC-CCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCC-chHHhhCCCCCCcEEEecchHhcc-
Confidence 889999997 999998876 999999999999999999999 454 44444 35677777 78998 8899999
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +|.|++++++++++.+..... .+.++.+.++++++++.++++.+. +..+++.+..+..++.+.+.+.+. .
T Consensus 249 g-~~gG~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~L~~~--g 319 (399)
T 3tqx_A 249 G-ASGGYTSGHKEIIEWLRNRSR----PYLFSNTVAPVIVATSLKVLELLK--TEGPQLRKQLQENSRYFRAGMEKL--G 319 (399)
T ss_dssp S-SCCEEEEECHHHHHHHHHHCH----HHHSSCCCCHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHHHHH--T
T ss_pred c-CceEEEEcCHHHHHHHHHhCc----ceeccCCCcHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHc--C
Confidence 5 688999999999998864211 123455789999999999999873 122334444444444444443333 2
Q ss_pred CCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------C-CEEEEecCCCCcHHHHHHHHHH
Q 002941 774 HRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 774 ~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g-~~lr~~ppl~~t~eeid~~v~~ 845 (863)
.+ .+.+.|.++.+.+... .....+.+.|.++||++.+. + +.+|+.++..++++++++++++
T Consensus 320 ~~---~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~ 388 (399)
T 3tqx_A 320 FQ---LVPGNHPIIPVMLGDA--------QLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEA 388 (399)
T ss_dssp CC---BCCCSSSEEEEEEECH--------HHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CC---cCCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHH
Confidence 22 2367888988888643 14678899999999999853 2 5899999889999999999999
Q ss_pred HHHHHHHH
Q 002941 846 LYQRLEEF 853 (863)
Q Consensus 846 L~~~l~~l 853 (863)
|+++++++
T Consensus 389 l~~~~~~~ 396 (399)
T 3tqx_A 389 FGQVGKKL 396 (399)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998765
No 46
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.96 E-value=4.7e-28 Score=273.62 Aligned_cols=337 Identities=11% Similarity=0.006 Sum_probs=244.1
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHhhcCCC
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKG 459 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~p~~ 459 (863)
+.+.+++|.+|+ +|+|+++ +.++|+..||+|++|+.+++++++... .....++...+|+++|+++++
T Consensus 48 ~~~~~~~~~~g~----~~ld~~s---~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g-- 118 (409)
T 3kki_A 48 GKHLVLGKQASP----DDIILQS---NDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTG-- 118 (409)
T ss_dssp SSCTTCCCCCCT----TSEECCC---SCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHT--
T ss_pred CCeeeeCCCCCC----ceEEeec---cCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhC--
Confidence 556778888998 9999987 456676678999999999999864321 111234667789999999987
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~ 539 (863)
.+.+++++||++|++.|++... ++ .+.|.++..+|+.+..++...+..
T Consensus 119 -~~~~i~~~sGt~a~~~~l~~~~-----------~~-----------gd~Vl~~~~~~~~~~~~~~~~g~~--------- 166 (409)
T 3kki_A 119 -FDECLLSQSGWNANVGLLQTIC-----------QP-----------NTNVYIDFFAHMSLWEGARYANAQ--------- 166 (409)
T ss_dssp -CSEEEEESCHHHHHHHHHHHHC-----------CT-----------TCEEEEETTSCHHHHHHHHHTTCE---------
T ss_pred -CCeEEEecchHHHHHHHHHHhc-----------CC-----------CCEEEECCCcCHHHHHHHHHcCCe---------
Confidence 3578888999999999998652 21 345667777888777665543211
Q ss_pred cccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 002941 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (863)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~ 619 (863)
.+++|. .| .+.+++.+.+ .+
T Consensus 167 ---------------------~~~~~~------------------------~d--------~~~le~~l~~-------~~ 186 (409)
T 3kki_A 167 ---------------------AHPFMH------------------------NN--------CDHLRMLIQR-------HG 186 (409)
T ss_dssp ---------------------EEEECT------------------------TC--------HHHHHHHHHH-------HC
T ss_pred ---------------------EEEecC------------------------CC--------HHHHHHHHHh-------cC
Confidence 001110 11 2456666653 12
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccc--ccccCCcchhhhcCC--CCcE--EEeccccCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTADLLGC--VPDI--ACYGKLLTG 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TG--fGRtG~~~a~e~~gv--~PDi--vt~sKgLgg 693 (863)
.++|+++++ ++++|.+.+ +++|+++|++||++||+||+|++ +|++|..+. +.+++ .+|+ .+++|++++
T Consensus 187 ~~~vi~~~~-~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~-~~~~~~~~~di~~~s~sK~~~~ 260 (409)
T 3kki_A 187 PGIIVVDSI-YSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGAGLL-AELGLTREVHFMTASLAKTFAY 260 (409)
T ss_dssp SCEEEEESB-CTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHH-HHHTCGGGCSEEEEESSSTTCS
T ss_pred CeEEEECCC-CCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCcch-hhcCCCCCCCEEEeecchhhCC
Confidence 479999998 999998776 99999999999999999999998 888887666 56677 5777 578999986
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
| .|++++++++++.+..... ...++...+|+++++++++++.+++ +++.+++.++.+++.+.| .
T Consensus 261 ~---gg~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L--------~ 325 (409)
T 3kki_A 261 R---AGAIWCNNEVNRCVPFISY----PAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGL--------S 325 (409)
T ss_dssp S---CEEEEESSSGGGTHHHHCH----HHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--------H
T ss_pred C---ceEEEECHHHHHHHHHhCc----CccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH--------H
Confidence 6 5889999998887764211 1223444789999999999998854 344445555444444422 2
Q ss_pred cCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------CCEEEEecCCCCcHHHHHHHHH
Q 002941 773 SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 773 ~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------g~~lr~~ppl~~t~eeid~~v~ 844 (863)
+.+. .+.+.|.++.+.+.... .+..+.+.|+++||++.+. .+.+|+.++..+++++|+++++
T Consensus 326 ~~g~--~~~~~~~~~~~~~~~~~--------~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~ 395 (409)
T 3kki_A 326 QLGL--TIRSESQIIGLETGDER--------NTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIE 395 (409)
T ss_dssp TTTC--CCCCSSSEEEEEEESHH--------HHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHH
T ss_pred HcCC--ccCCCCCEEEEEeCCHH--------HHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHH
Confidence 2221 23468889999886431 3567899999999999752 2689999999999999999999
Q ss_pred HHHHHHHH
Q 002941 845 KLYQRLEE 852 (863)
Q Consensus 845 ~L~~~l~~ 852 (863)
+|+++++.
T Consensus 396 ~l~~~l~~ 403 (409)
T 3kki_A 396 VCSDAVNY 403 (409)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99998865
No 47
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.95 E-value=1.4e-26 Score=260.19 Aligned_cols=345 Identities=14% Similarity=0.111 Sum_probs=243.6
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCC-CC---CChHHHHHHHHHHhhcCCC
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP-EN---VYEPALECAELLLQGVGKG 459 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~-~~---~~~~~~eLae~L~~~~p~~ 459 (863)
|+|++++|.+|+ +|+|+.++ +++|++.+|++.+|+.+++++++..... .+ .++...+|.++|+++++.
T Consensus 34 ~~g~~~~~~~g~----~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~- 105 (401)
T 1fc4_A 34 AQQADITVADGS----HVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGM- 105 (401)
T ss_dssp CSSSEEEBTTSC----EEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTC-
T ss_pred CCCceEEeeCCc----cEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCC-
Confidence 788999999999 99999987 4688646899999999999886543210 11 256788999999999973
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~ 539 (863)
+..++++||++|++.+++.+. ++ .+.|.+...+|+.+..++...+.
T Consensus 106 --~~~i~~~sGs~a~~~~~~~~~-----------~~-----------gd~v~~~~~~~~~~~~~~~~~g~---------- 151 (401)
T 1fc4_A 106 --EDAILYSSCFDANGGLFETLL-----------GA-----------EDAIISDALNHASIIDGVRLCKA---------- 151 (401)
T ss_dssp --SEEEEESCHHHHHHTTHHHHC-----------CT-----------TCEEEEETTCCHHHHHHHHTSCS----------
T ss_pred --CcEEEeCChHHHHHHHHHHHc-----------CC-----------CCEEEEcchhHHHHHHHHHHcCC----------
Confidence 467788999999999888651 21 33556666778766554432210
Q ss_pred cccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 002941 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (863)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~ 619 (863)
..+.+|. .| .+.+++.+++. .....+
T Consensus 152 --------------------~~~~~~~------------------------~d--------~~~l~~~l~~~--~~~~~~ 177 (401)
T 1fc4_A 152 --------------------KRYRYAN------------------------ND--------MQELEARLKEA--REAGAR 177 (401)
T ss_dssp --------------------EEEEECT------------------------TC--------HHHHHHHHHHH--HHTTCS
T ss_pred --------------------ceEEECC------------------------CC--------HHHHHHHHHHh--hccCCC
Confidence 0011110 11 13344555320 000115
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccc-ccc-cccCCcchhhhcCCCC--cEE--EeccccCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TGF-WRLGVETTADLLGCVP--DIA--CYGKLLTG 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~-TGf-GRtG~~~a~e~~gv~P--Div--t~sKgLgg 693 (863)
+++|++++. ++..|.+.+ +++|.++|++||+++|+||++ +|+ +++|..+ .+.+++.| |++ +++|+++|
T Consensus 178 ~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~~~~~di~~~s~sK~~~~ 251 (401)
T 1fc4_A 178 HVLIATDGV-FSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS-HEYCDVMGRVDIITGTLGKALGG 251 (401)
T ss_dssp SEEEEEESE-ETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH-HHHTTCTTCCSEEEEESSSTTCS
T ss_pred ceEEEEeCC-cCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCCcc-HHHcCCCcCCcEEEecchhhccC
Confidence 788999997 999998876 999999999999999999999 488 3566653 45566654 887 88999977
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
+. .|++++++++++.+.... ..+.++++.++++++++.++|+.+++ +++.+++.++.+++.+ .+.+.
T Consensus 252 ~~--gG~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~----~L~~~-- 319 (401)
T 1fc4_A 252 AS--GGYTAARKEVVEWLRQRS----RPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFRE----QMSAA-- 319 (401)
T ss_dssp SS--CEEEEECHHHHHHHHHHC----HHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----HHHHT--
T ss_pred CC--CEEEEcCHHHHHHHHHhC----cCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHc--
Confidence 63 688999999998876421 01334778899999999999998753 3444555554444444 33322
Q ss_pred cCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--------CEEEEecCCCCcHHHHHHHHH
Q 002941 773 SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--------NVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 773 ~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--------~~lr~~ppl~~t~eeid~~v~ 844 (863)
..+. +.+.|.++.+++.+. .....+.+.|.++||++.+.. +.+|+.++..+++++++++++
T Consensus 320 g~~~---~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~ 388 (401)
T 1fc4_A 320 GFTL---AGADHAIIPVMLGDA--------VVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVE 388 (401)
T ss_dssp TCCB---CCSSSSEEEEEEECH--------HHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHH
T ss_pred CCcc---cCCCCCEEEEEcCCh--------HHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHH
Confidence 2222 246788998888531 135678899999999998742 479999888899999999999
Q ss_pred HHHHHHHHH
Q 002941 845 KLYQRLEEF 853 (863)
Q Consensus 845 ~L~~~l~~l 853 (863)
+|+++++++
T Consensus 389 ~l~~~~~~~ 397 (401)
T 1fc4_A 389 AFTRIGKQL 397 (401)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988765
No 48
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.94 E-value=1.6e-24 Score=243.38 Aligned_cols=342 Identities=13% Similarity=0.118 Sum_probs=238.4
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHhhcCCC
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKG 459 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~p~~ 459 (863)
++|.+++ .+|+ .|+|+.++.. +|+..+|.+.+|+.+++++..+.. ...+..+...+++++|++..+
T Consensus 33 ~~g~~~~-~~g~----~~idl~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g-- 102 (398)
T 3a2b_A 33 KQDTEVK-IDGR----RVLMFGSNSY---LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVG-- 102 (398)
T ss_dssp CSSSEEE-ETTE----EEEECSCSCT---TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT--
T ss_pred CCCceEE-ECCc----eEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhC--
Confidence 7889999 8888 9999998633 676468999999999998754321 122346778899999999987
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~ 539 (863)
.++++|++||++|++.+++.+. ++ .+.|.....+|+.+..++...|..
T Consensus 103 -~~~v~~~~ggt~a~~~~~~~~~-----------~~-----------gd~V~~~~p~~~~~~~~~~~~g~~--------- 150 (398)
T 3a2b_A 103 -KEAAILFSTGFQSNLGPLSCLM-----------GR-----------NDYILLDERDHASIIDGSRLSFSK--------- 150 (398)
T ss_dssp -CSEEEEESSHHHHHHHHHHHSS-----------CT-----------TCEEEEETTCCHHHHHHHHHSSSE---------
T ss_pred -CCcEEEECCHHHHHHHHHHHHh-----------CC-----------CCEEEECCccCHHHHHHHHHcCCc---------
Confidence 3689999999999999998762 11 234555566777766555442210
Q ss_pred cccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 002941 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (863)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~ 619 (863)
.+.+|. .| .+.+++.+.+ ...++
T Consensus 151 ---------------------~~~v~~------------------------~d--------~~~l~~~l~~----~~~~~ 173 (398)
T 3a2b_A 151 ---------------------VIKYGH------------------------NN--------MEDLRAKLSR----LPEDS 173 (398)
T ss_dssp ---------------------EEEECT------------------------TC--------HHHHHHHHHT----SCSSS
T ss_pred ---------------------eEEeCC------------------------CC--------HHHHHHHHHh----hccCC
Confidence 011110 11 2446666653 11126
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc-c-ccccCCcchhhhcCCC--CcEE--EeccccCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGCV--PDIA--CYGKLLTG 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T-G-fGRtG~~~a~e~~gv~--PDiv--t~sKgLgg 693 (863)
+.+|+++++ ++..|.+.+ +++|.++|++||+++|+||++. | ++++|..+ .+.+++. +|++ +++|.++.
T Consensus 174 ~~~v~~~~~-~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~~~di~~~s~sK~~~~ 247 (398)
T 3a2b_A 174 AKLICTDGI-FSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGT-ASHFGLNDDVDLIMGTFSKSLAS 247 (398)
T ss_dssp CEEEEEESB-CTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCH-HHHHTCGGGCSEEEEESSSTTCS
T ss_pred ceEEEEeCC-CCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCCCch-HhhcCCCcCCeEEEecccccccC
Confidence 789999997 999998775 8999999999999999999995 3 34555433 4556664 6888 88999972
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
+.|++++++++++.+.... ..+..++..+|+.++++.++|+.++. .+++.+..+..++.+.+.+.+. .
T Consensus 248 ---~GG~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~l~~~L~~~--g 315 (398)
T 3a2b_A 248 ---LGGFVAGDADVIDFLKHNA----RSVMFSASMTPASVASTLKALEIIQN---EPEHIEKLWKNTDYAKAQLLDH--G 315 (398)
T ss_dssp ---SCEEEEECHHHHHHHHHHC----HHHHSSBCCCHHHHHHHHHHHHHHHH---CTHHHHHHHHHHHHHHHHHHHT--T
T ss_pred ---CCcEEEeCHHHHHHHHHhc----ccceecCCCCHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHHHhc--C
Confidence 1267899999998876411 12455667788888888889987632 2233333344444443343332 2
Q ss_pred CCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------CCEEEEecCCCCcHHHHHHHHHH
Q 002941 774 HRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 774 ~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------g~~lr~~ppl~~t~eeid~~v~~ 845 (863)
.+ -+++.|.++.+.+... .....+.+.|+++||++.+. .+.+|+.++..++++++++++++
T Consensus 316 ~~---~~~~~g~~~~~~~~~~--------~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~ 384 (398)
T 3a2b_A 316 FD---LGATESPILPIFIRSN--------EKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEK 384 (398)
T ss_dssp CC---BCSCCSSEEEEECCCH--------HHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHH
T ss_pred CC---cCCCCCCEEEEEcCCH--------HHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHH
Confidence 22 2345688888887531 13567899999999999875 26899998887899999999999
Q ss_pred HHHHHHHH
Q 002941 846 LYQRLEEF 853 (863)
Q Consensus 846 L~~~l~~l 853 (863)
|.++++++
T Consensus 385 l~~~l~~~ 392 (398)
T 3a2b_A 385 MVKVFKQA 392 (398)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99998765
No 49
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.94 E-value=1.5e-24 Score=242.20 Aligned_cols=339 Identities=15% Similarity=0.081 Sum_probs=237.4
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHhhcCCC
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKG 459 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~p~~ 459 (863)
++|.+++ .+|+ +|+|+.++. ++|+..+|++.+|+.+++++++... .....++...+|.++|+++++
T Consensus 29 ~~g~~~~-~~g~----~~id~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g-- 98 (384)
T 1bs0_A 29 GAGRWLV-ADDR----QYLNFSSND---YLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG-- 98 (384)
T ss_dssp CSSSEEE-ETTE----EEEECSCCC---TTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT--
T ss_pred CCCceEE-ECCc----eEEEeeccC---ccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhC--
Confidence 7889999 6888 999999863 3773378999999999998854311 111345788999999999997
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~ 539 (863)
.+.+++++||++|+..+++... ++ .++|.+...+|+.+..++...|..
T Consensus 99 -~~~~i~~~sGt~a~~~~~~~~~-----------~~-----------gd~v~~~~~~~~~~~~~~~~~g~~--------- 146 (384)
T 1bs0_A 99 -YSRALLFISGFAANQAVIAAMM-----------AK-----------EDRIAADRLSHASLLEAASLSPSQ--------- 146 (384)
T ss_dssp -CSEEEEESCHHHHHHHHHHHHC-----------CT-----------TCEEEEETTCCHHHHHHHHTSSSE---------
T ss_pred -CCcEEEeCCcHHHHHHHHHHhC-----------CC-----------CcEEEEcccccHHHHHHHHHcCCC---------
Confidence 3578899999999999987651 21 346677788888776655442210
Q ss_pred cccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 002941 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (863)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~ 619 (863)
+ +.+|. .| .+.+++.+++ ..+.
T Consensus 147 -------------------~--~~~~~------------------------~d--------~~~l~~~l~~-----~~~~ 168 (384)
T 1bs0_A 147 -------------------L--RRFAH------------------------ND--------VTHLARLLAS-----PCPG 168 (384)
T ss_dssp -------------------E--EEECT------------------------TC--------HHHHHHHHHS-----CCSS
T ss_pred -------------------E--EEeCC------------------------CC--------HHHHHHHHHh-----cCCC
Confidence 0 11110 11 2346666653 1223
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc-cc-cccCCcchhhhcCCCCcEE--EeccccCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGCVPDIA--CYGKLLTGGV 695 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T-Gf-GRtG~~~a~e~~gv~PDiv--t~sKgLggG~ 695 (863)
.++|+++++ ++..|.+.+ +++|.++|++||+++|+||++. |+ +++|..+. +.++..||++ +++|.++
T Consensus 169 ~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~-~~~~~~~di~~~s~sK~~~--- 239 (384)
T 1bs0_A 169 QQMVVTEGV-FSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSC-WLQKVKPELLVVTFGKGFG--- 239 (384)
T ss_dssp CEEEEEESB-CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHH-HHTTCCCSEEEEESSSTTS---
T ss_pred CeEEEEeCC-CCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCCCchH-HhcCCCCcEEEeeccchhh---
Confidence 688999987 999998886 8999999999999999999994 43 45555433 5677789988 8899987
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
.|.|++++++++++.+.... ..+.++++.++++++++.++|+.+++. +.+++.+..+..++.+.+ .+.+.+
T Consensus 240 ~~GG~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~~~~l~~----~L~~~g 310 (384)
T 1bs0_A 240 VSGAAVLCSSTVADYLLQFA----RHLIYSTSMPPAQAQALRASLAVIRSD-EGDARREKLAALITRFRA----GVQDLP 310 (384)
T ss_dssp SCCEEEEECHHHHHHHHHHC----HHHHSSBCCCHHHHHHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHH----HHTTSS
T ss_pred ccCcEEEeCHHHHHHHHHhc----hhhhcCCCCCHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHH----HHHhcC
Confidence 35588999999998876421 123345578999999999999987642 223334444444443332 333343
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--------CEEEEecCCCCcHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--------NVIYLMCGPCSSPEVCSQLLLKLY 847 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--------~~lr~~ppl~~t~eeid~~v~~L~ 847 (863)
. .-..+.|.++.+.+... .....+.+.|.++||++.+.. +.+|+.++..++++++++++++|+
T Consensus 311 ~-~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~ 381 (384)
T 1bs0_A 311 F-TLADSCSAIQPLIVGDN--------SRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLH 381 (384)
T ss_dssp C-EECSCCSSBCCEEEESH--------HHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHH
T ss_pred C-cccCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHH
Confidence 2 21236677777777521 135678999999999998742 679998888889999999999987
Q ss_pred HH
Q 002941 848 QR 849 (863)
Q Consensus 848 ~~ 849 (863)
++
T Consensus 382 ~~ 383 (384)
T 1bs0_A 382 GN 383 (384)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 50
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.94 E-value=3.8e-25 Score=246.80 Aligned_cols=355 Identities=11% Similarity=0.015 Sum_probs=242.0
Q ss_pred cccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcC--CCC
Q 002941 383 CGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG--KGW 460 (863)
Q Consensus 383 ~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p--~~~ 460 (863)
+|+|+++||.+|+ +|+|+..| ...++ .+|+|.+|+.+++++..+... ....+...++++.+.+..+ ..
T Consensus 15 ~~~g~~~~d~~g~----~~i~~~~~--~~~~~--~~~~v~~a~~~~~~~~~~~y~-~~~~~l~~~la~~l~~~~g~~~~- 84 (391)
T 3dzz_A 15 RQGNSIKWGVLKE----KELPMWIA--EMDFK--IAPEIMASMEEKLKVAAFGYE-SVPAEYYKAVADWEEIEHRARPK- 84 (391)
T ss_dssp CCTTBTTTTTCCT----TCEECCSS--CCSSC--CCHHHHHHHHHHHTTCCCCCB-CCCHHHHHHHHHHHHHHHSCCCC-
T ss_pred CCCCccceeccCC----Cceecccc--CCCCC--CCHHHHHHHHHHHhcCcCCCC-CCCHHHHHHHHHHHHHHhCCCCC-
Confidence 4899999999999 89999875 33444 689999999999987433211 1234556777888877654 22
Q ss_pred CCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCc
Q 002941 461 ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPW 540 (863)
Q Consensus 461 ~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~ 540 (863)
.+.++|+++|++|++.+++...+ .| .+|++...+||+....+...+..
T Consensus 85 ~~~i~~~~g~~~a~~~~~~~l~~---------~g------------d~vl~~~~~~~~~~~~~~~~g~~----------- 132 (391)
T 3dzz_A 85 EDWCVFASGVVPAISAMVRQFTS---------PG------------DQILVQEPVYNMFYSVIEGNGRR----------- 132 (391)
T ss_dssp GGGEEEESCHHHHHHHHHHHHSC---------TT------------CEEEECSSCCHHHHHHHHHTTCE-----------
T ss_pred HHHEEECCCHHHHHHHHHHHhCC---------CC------------CeEEECCCCcHHHHHHHHHcCCE-----------
Confidence 46899999999999999987621 12 57999999999865544322110
Q ss_pred ccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcE
Q 002941 541 YSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCI 620 (863)
Q Consensus 541 ~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~i 620 (863)
.+.+|..+ . ...| ..| .+.+++.+.+ .++
T Consensus 133 --------------------~~~~~~~~------------~--~~~~--~~d--------~~~l~~~l~~-------~~~ 161 (391)
T 3dzz_A 133 --------------------VISSDLIY------------E--NSKY--SVN--------WADLEEKLAT-------PSV 161 (391)
T ss_dssp --------------------EEECCCEE------------E--TTEE--ECC--------HHHHHHHHTS-------TTE
T ss_pred --------------------EEEeeeee------------c--CCce--eec--------HHHHHHHHhc-------cCc
Confidence 01111000 0 0000 011 2456666642 345
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhcCC-CCc----EEEeccccC-C
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGC-VPD----IACYGKLLT-G 693 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv-~PD----ivt~sKgLg-g 693 (863)
.+|+++.. ++.+|.+. +++.+++|.++|++||++||+||+|++|++.|. ......++. .|| +.+++|+++ +
T Consensus 162 ~~v~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~ 239 (391)
T 3dzz_A 162 RMMVFCNP-HNPIGYAW-SEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLA 239 (391)
T ss_dssp EEEEEESS-BTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCT
T ss_pred eEEEEECC-CCCCCccc-CHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhcccc
Confidence 66666665 89999655 677799999999999999999999999988885 444544443 378 446799997 7
Q ss_pred CCCCceeeecc-HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 694 GVIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 694 G~~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
| +++|+++++ +++++.+.... .+..+++.++++++++.++|+.. +++.+++.+..+..++.+.+. +.
T Consensus 240 G-~r~G~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~----l~ 307 (391)
T 3dzz_A 240 A-LHAACAIIPNPDLRARAEESF-----FLAGIGEPNLLAIPAAIAAYEEG--HDWLRELKQVLRDNFAYAREF----LA 307 (391)
T ss_dssp T-TCCEEEECCSHHHHHHHHHHH-----HHHTCSSCCTTHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHH----HH
T ss_pred c-hhheEEEECCHHHHHHHHHHH-----HhhccCCCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHH----HH
Confidence 7 899999997 99988876411 12456788999999999999863 344555566555666555443 33
Q ss_pred c-CCCeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecC-------CEEEEecCCCCcHHHHHHH
Q 002941 773 S-HRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLG-------NVIYLMCGPCSSPEVCSQL 842 (863)
Q Consensus 773 ~-~p~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g-------~~lr~~ppl~~t~eeid~~ 842 (863)
+ .|.+..+...| .++.+.+.... .....+.+.|+ ++||+++++. +.+|+.+. +++++++++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~ 378 (391)
T 3dzz_A 308 KEVPEVKVLDSNASYLAWVDISALG-------MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA--CPKELVIDG 378 (391)
T ss_dssp HHCTTSEECCCCBSSEEEEECGGGC-------SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC--SCHHHHHHH
T ss_pred hhCCCcEEeccCceEEEEEehhhcC-------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHH
Confidence 3 45444444444 44457775421 02567888886 8999998732 78999755 799999999
Q ss_pred HHHHHHHHHHH
Q 002941 843 LLKLYQRLEEF 853 (863)
Q Consensus 843 v~~L~~~l~~l 853 (863)
+++|.++++++
T Consensus 379 l~~l~~~l~~~ 389 (391)
T 3dzz_A 379 MQRLKQGVLNL 389 (391)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999988654
No 51
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.93 E-value=1.9e-25 Score=248.35 Aligned_cols=348 Identities=12% Similarity=0.041 Sum_probs=236.9
Q ss_pred cccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC-CC
Q 002941 383 CGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WA 461 (863)
Q Consensus 383 ~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~-~~ 461 (863)
+|+|+++||.+|+ +|+|+.+|. ..++ .+|+|.+|+.+++++..+...... .+...++++.+.+..+.. ..
T Consensus 11 ~~~g~~~~d~~g~----~~idl~~~~--~~~~--~~~~v~~a~~~~~~~~~~~y~~~~-~~lr~~la~~~~~~~~~~~~~ 81 (377)
T 3fdb_A 11 RARNTMKWTRYGQ----GVLPLWVAE--SDFS--TCPAVLQAITDAVQREAFGYQPDG-SLLSQATAEFYADRYGYQARP 81 (377)
T ss_dssp HHTCCHHHHSSCT----TSEECCSSC--CCSC--CCHHHHHHHHHHHHTTCCSSCCSS-CCHHHHHHHHHHHHHCCCCCG
T ss_pred cCCCCceeeccCC----CeeeecccC--CCCC--CCHHHHHHHHHHHHcCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCH
Confidence 5889999999999 999998763 4454 689999999999987322211122 556666777766543311 14
Q ss_pred CeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcc
Q 002941 462 SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWY 541 (863)
Q Consensus 462 ~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~ 541 (863)
++++|+++|++|++.+++...+ .| .+|++...+||+....+...+..
T Consensus 82 ~~i~~t~g~~~a~~~~~~~~~~---------~g------------d~vl~~~~~~~~~~~~~~~~g~~------------ 128 (377)
T 3fdb_A 82 EWIFPIPDVVRGLYIAIDHFTP---------AQ------------SKVIVPTPAYPPFFHLLSATQRE------------ 128 (377)
T ss_dssp GGEEEESCHHHHHHHHHHHHSC---------TT------------CCEEEEESCCTHHHHHHHHHTCC------------
T ss_pred HHEEEeCChHHHHHHHHHHhcC---------CC------------CEEEEcCCCcHhHHHHHHHcCCE------------
Confidence 6899999999999999987621 12 56999999999975443332110
Q ss_pred cCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEE
Q 002941 542 SGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG 621 (863)
Q Consensus 542 ~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iA 621 (863)
+..++... ..| .+.+++.+.+ +..+
T Consensus 129 -----------------~~~~~~~~-----------------------~~d--------~~~l~~~l~~-------~~~~ 153 (377)
T 3fdb_A 129 -----------------GIFIDATG-----------------------GIN--------LHDVEKGFQA-------GARS 153 (377)
T ss_dssp -----------------EEEEECTT-----------------------SCC--------HHHHHHHHHT-------TCCE
T ss_pred -----------------EEEccCCC-----------------------CCC--------HHHHHHHhcc-------CCCE
Confidence 00111110 011 2456667753 2346
Q ss_pred EEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC-C----cchhhhcCCCCcEEEeccccC-CCC
Q 002941 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-V----ETTADLLGCVPDIACYGKLLT-GGV 695 (863)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG-~----~~a~e~~gv~PDivt~sKgLg-gG~ 695 (863)
.+++.| ++..|.+. |.+.+++|.++|++||+++|+||+|++|++.| . .......+..+++.+++|++| +|
T Consensus 154 v~i~~p--~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G- 229 (377)
T 3fdb_A 154 ILLCNP--YNPLGMVF-APEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAG- 229 (377)
T ss_dssp EEEESS--BTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGG-
T ss_pred EEEeCC--CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcc-
Confidence 666677 78888655 67779999999999999999999999998887 2 333333444456678899996 67
Q ss_pred CCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 696 IPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 696 ~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+++|++++ ++++++.+... .+..+++.++++++++.++|+.. +++.++..+..+..++.+.+.+.+. .
T Consensus 230 ~r~G~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~---~ 298 (377)
T 3fdb_A 230 LKCAQIIFSNPSDAEHWQQL------SPVIKDGASTLGLIAAEAAYRYG--TDFLNQEVAYLKNNHDFLLHEIPKR---I 298 (377)
T ss_dssp GCCEEEECCSHHHHHHHHHS------CHHHHCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHH---S
T ss_pred hhheEEEeCCHHHHHHHHHH------HHhhcCCCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHhh---C
Confidence 89997665 88998888642 34567889999999999999853 3445566666666666554443322 4
Q ss_pred CCeeEecccceEE-EEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec-------CCEEEEecCCCCcHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLC-AIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 775 p~v~~vrg~Gl~~-~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~ 845 (863)
|.+..+...|.++ .+++..... ..+++..|+++ ||++.|. .+.+|+.+. .+++++++++++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~--~~~e~i~~~l~~ 368 (377)
T 3fdb_A 299 PGAKITPMQATYLMWIDFRDTTI--------EGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA--TSREVLEEAIDR 368 (377)
T ss_dssp TTCEECCCSBCSEEEEECTTSCC--------CSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHH
T ss_pred CCceEecCCeeEEEEEECcccCC--------CHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeC--CCHHHHHHHHHH
Confidence 5444455555444 577764320 12356667765 9999874 378999755 489999999999
Q ss_pred HHHHHHH
Q 002941 846 LYQRLEE 852 (863)
Q Consensus 846 L~~~l~~ 852 (863)
|.+++++
T Consensus 369 l~~~l~~ 375 (377)
T 3fdb_A 369 MAKAVSH 375 (377)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 9988754
No 52
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.93 E-value=2.5e-24 Score=239.50 Aligned_cols=354 Identities=10% Similarity=0.011 Sum_probs=231.4
Q ss_pred cccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC-CC
Q 002941 383 CGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WA 461 (863)
Q Consensus 383 ~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~-~~ 461 (863)
+|+|+++||.+|++ +++|+.+| ...++ .+|+|.+|+.+++++..+.. .....+...++++.|++..+.. ..
T Consensus 11 ~~~g~~~~d~~~~~---~~i~l~~~--~~~~~--~~~~v~~a~~~~~~~~~~~y-~~~~~~~~~~l~~~l~~~~g~~~~~ 82 (383)
T 3kax_A 11 RGTHSIKWDTYKNE---ELIHAWIA--DMDFE--VPQPIQTALKKRIEHPIFGY-TLPPENIGDIICNWTKKQYNWDIQK 82 (383)
T ss_dssp --------CCCSSS---CCEECCCS--SCSSC--CCHHHHHHHHHHHHSCCCCC-CCCCTTHHHHHHHHHHHHHCCCCCG
T ss_pred cCCCceeeeccCCC---Ceeecccc--cCCCC--CCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHHHHhCCCCCh
Confidence 48999999966542 89999876 33444 68999999999998633221 1225677888999998876611 14
Q ss_pred CeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcc
Q 002941 462 SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWY 541 (863)
Q Consensus 462 ~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~ 541 (863)
+.++|+++|++|++.+++.+++ .| .+|++...+||+....+...+..
T Consensus 83 ~~v~~~~g~~~a~~~~~~~l~~---------~g------------d~vl~~~~~~~~~~~~~~~~g~~------------ 129 (383)
T 3kax_A 83 EWIVFSAGIVPALSTSIQAFTK---------EN------------ESVLVQPPIYPPFFEMVTTNNRQ------------ 129 (383)
T ss_dssp GGEEEESCHHHHHHHHHHHHCC---------TT------------CEEEECSSCCHHHHHHHHHTTCE------------
T ss_pred hhEEEcCCHHHHHHHHHHHhCC---------CC------------CEEEEcCCCcHHHHHHHHHcCCE------------
Confidence 6899999999999999987721 12 57999999999876443322110
Q ss_pred cCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEE
Q 002941 542 SGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG 621 (863)
Q Consensus 542 ~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iA 621 (863)
.+.+|.... ...| .-| .+.+++.+. .++.
T Consensus 130 -------------------~~~~~~~~~--------------~~~~--~~d--------~~~l~~~l~--------~~~~ 158 (383)
T 3kax_A 130 -------------------LCVSPLQKQ--------------NDTY--AID--------FEHLEKQFQ--------QGVK 158 (383)
T ss_dssp -------------------EEECCCEEE--------------TTEE--ECC--------HHHHHHHHT--------TTCC
T ss_pred -------------------EEeccceec--------------CCcE--EEc--------HHHHHHHhC--------cCCe
Confidence 011110000 0000 011 245666662 2344
Q ss_pred EEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhh-----cCCCCcEEEeccccC-CC
Q 002941 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADL-----LGCVPDIACYGKLLT-GG 694 (863)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~-----~gv~PDivt~sKgLg-gG 694 (863)
+|+++.. ++..|.+ .|.+.+++|.++|++||++||+||+|++|+++|..+ .... .+..+++.+++|.++ +|
T Consensus 159 ~v~i~~p-~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 236 (383)
T 3kax_A 159 LMLLCSP-HNPIGRV-WKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKTFNIAG 236 (383)
T ss_dssp EEEEESS-BTTTTBC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGG
T ss_pred EEEEeCC-CCCCCcC-cCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccccCcEEEEEEChhhccCcc
Confidence 5555554 8888865 478889999999999999999999999998887522 1211 244455668899998 78
Q ss_pred CCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 695 VIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 695 ~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
+++|++++ ++++++.+.... .+..+++.++++++++.++|+. .+++.+++.+..+..++.+.+.+.+.
T Consensus 237 -~r~G~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~l~~~--- 305 (383)
T 3kax_A 237 -LQASIIIIPNEKLRQAFTSIQ-----YRQGFHGLNIFAYTAMQSAYTE--CNDWLNEIRFYIEDNAKFACEYIKDH--- 305 (383)
T ss_dssp -GCCEEEECCCHHHHHHHHHHH-----HHTTCCCCCHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred -hhheEEEeCCHHHHHHHHHHH-----hhcccCCCCHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 89999988 688888876421 1234558899999999998875 23445556666666666554433221
Q ss_pred CCCeeEecccceEEE-EEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHH
Q 002941 774 HRTVQRVVALGTLCA-IELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 774 ~p~v~~vrg~Gl~~~-iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~ 844 (863)
.|.+..+.+.|.++. +++.... .....+.+.|+ ++||+++++ .+.+|+.+. .++++++++++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~--~~~~~i~~~l~ 376 (383)
T 3kax_A 306 IPTLSVMKPEGSFLLWIDCSALN-------LSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIG--CPRSVLEEILN 376 (383)
T ss_dssp CTTCEECCCSBSSEEEEECGGGC-------CCHHHHHHHHHHTSCEECEESGGGCTTCTTEEEEECS--SCHHHHHHHHH
T ss_pred CCCceEecCCceEEEEEEccccC-------CCHHHHHHHHHhhCCEEeECchhhcCCCCCeEEEEEc--CCHHHHHHHHH
Confidence 455555566665554 7776421 01567888898 689999873 278999754 58999999999
Q ss_pred HHHHHH
Q 002941 845 KLYQRL 850 (863)
Q Consensus 845 ~L~~~l 850 (863)
+|.+++
T Consensus 377 ~l~~~l 382 (383)
T 3kax_A 377 RLRHTF 382 (383)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998875
No 53
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.92 E-value=2.2e-23 Score=236.67 Aligned_cols=356 Identities=11% Similarity=-0.013 Sum_probs=231.6
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc----ccCCCCCChHHHHHHHHHHhhcCCC-CCC-eEEEeCChhhH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH----VMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTA 473 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~----~~~~~~~~~~~~eLae~L~~~~p~~-~~~-~v~f~~SGSeA 473 (863)
.++|+.+|.. .+| .+|.|.+|+.+++++... +....+..+...++++.+.+..+.+ ..+ +++|+++|++|
T Consensus 38 ~~i~l~~~~~--~~~--~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a 113 (429)
T 1yiz_A 38 KPLNLGQGFP--DYH--APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEA 113 (429)
T ss_dssp CCEECCSSSC--SSC--CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred CEEEecCCCC--CCC--CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHH
Confidence 6889887754 456 479999999999976311 1111112334455555555444421 136 89999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcc
Q 002941 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (863)
Q Consensus 474 vE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (863)
++.+++.+.+ .| .+|++...+|||....+... |..
T Consensus 114 ~~~~~~~~~~---------~g------------d~Vl~~~p~y~~~~~~~~~~-g~~----------------------- 148 (429)
T 1yiz_A 114 LYATIQGHVD---------EG------------DEVIIIEPFFDCYEPMVKAA-GGI----------------------- 148 (429)
T ss_dssp HHHHHHHHCC---------TT------------CEEEEEESCCTTHHHHHHHT-TCE-----------------------
T ss_pred HHHHHHHhcC---------CC------------CEEEEcCCCchhHHHHHHHc-CCE-----------------------
Confidence 9999997621 12 57999999999975443221 100
Q ss_pred cccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
+..++...... .... ...+...| .+.+++.+. .++++|++++. ++..
T Consensus 149 -----~~~~~~~~~~~-------~~~~----~~~~~~~d--------~~~l~~~l~--------~~~~~v~~~~p-~npt 195 (429)
T 1yiz_A 149 -----PRFIPLKPNKT-------GGTI----SSADWVLD--------NNELEALFN--------EKTKMIIINTP-HNPL 195 (429)
T ss_dssp -----EEEEECBCCCS-------SSSE----EGGGCBCC--------HHHHHHHCC--------TTEEEEEEESS-CTTT
T ss_pred -----EEEEeCCcccc-------cccc----cccCcccC--------HHHHHHHhc--------cCceEEEECCC-CCCC
Confidence 00011100000 0000 00000011 244555552 35778888886 8999
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhh----hcCCCCcEEEeccccC-CCCCCceeeeccHHH
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTAD----LLGCVPDIACYGKLLT-GGVIPLAATLATNAV 707 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e----~~gv~PDivt~sKgLg-gG~~Pigav~~~~~i 707 (863)
|.+. |++++++|.++|++||++||+||++++|++.|.. ..+. .++..+++.+++|+++ +| +|+|++++++++
T Consensus 196 G~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~ 273 (429)
T 1yiz_A 196 GKVM-DRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTG-WKIGWAYGPEAL 273 (429)
T ss_dssp CCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGG-GCCEEEESCHHH
T ss_pred CccC-CHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCC-cceEEEEeCHHH
Confidence 9664 7889999999999999999999999999877752 1221 3445566778999998 78 899999999999
Q ss_pred HHhhhcCCccceeecccCCCccHHHHHHHHHHHHH-----hcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc
Q 002941 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKW-----FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA 782 (863)
Q Consensus 708 ~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~-----l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg 782 (863)
++.+.. ..+..+++.++++++++.++|+. ...+++.+++++..++.++.+.+.+.+. +.......
T Consensus 274 ~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~ 343 (429)
T 1yiz_A 274 LKNLQM------VHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV----GMNPTVPQ 343 (429)
T ss_dssp HHHHHH------HHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH----TCEEEECS
T ss_pred HHHHHH------HHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCC
Confidence 988764 13456889999999999999987 4335566777777777777665554432 32212233
Q ss_pred cceEEEEEEccCCcCC----CCchHHHHHHHHHHH-HCCcEEEec------------CCEEEEecCCCCcHHHHHHHHHH
Q 002941 783 LGTLCAIELQAAGCNA----GYGSLYAASLLKKLR-EDGVYMRPL------------GNVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 783 ~Gl~~~iel~~~~~~~----~~~~~~~~~l~~~l~-e~GV~~~p~------------g~~lr~~ppl~~t~eeid~~v~~ 845 (863)
.|+++.+++.....+. .........+++.|+ ++||++.|. ++.+|+.++ .++++|++++++
T Consensus 344 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~i~~~l~~ 421 (429)
T 1yiz_A 344 GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENLQKAAEI 421 (429)
T ss_dssp BSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC--SCHHHHHHHHHH
T ss_pred cceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec--CCHHHHHHHHHH
Confidence 4788888886431000 000013456788776 799999863 468999876 489999999999
Q ss_pred HHHHHH
Q 002941 846 LYQRLE 851 (863)
Q Consensus 846 L~~~l~ 851 (863)
|.++++
T Consensus 422 l~~~l~ 427 (429)
T 1yiz_A 422 LRKWKG 427 (429)
T ss_dssp HHHHSC
T ss_pred HHHhcc
Confidence 987653
No 54
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.92 E-value=7.9e-24 Score=237.55 Aligned_cols=360 Identities=11% Similarity=-0.012 Sum_probs=234.1
Q ss_pred ecccceEEEEcCCCcc-c--ceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcC-
Q 002941 382 RCGENFSVYQDQKNKF-I--GQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG- 457 (863)
Q Consensus 382 ~~G~G~~v~D~dG~~~-~--~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p- 457 (863)
++|+|+++||.+|++| . ++++|+.++. ..++ .+|.|.+|+.+++++..... .....+...++++.+.+..+
T Consensus 11 ~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~--~~~~--~~~~v~~a~~~~~~~~~~~y-~~~~~~l~~~la~~l~~~~g~ 85 (399)
T 1c7n_A 11 RKNLGSLKWDLMYSQNPEVGNEVVPLSVAD--MEFK--NPPELIEGLKKYLDETVLGY-TGPTEEYKKTVKKWMKDRHQW 85 (399)
T ss_dssp CTTTTBHHHHHHHHHCTTCCTTCCCCCSSS--CSSC--CCHHHHHHHHHHHHHCCCSS-BCCCHHHHHHHHHHHHHHHCC
T ss_pred ccCCCccccccchhhccccCCCceeeeecC--CCCC--CCHHHHHHHHHHHhcCCCCC-CCCcHHHHHHHHHHHHHHhCC
Confidence 3589999999988522 1 2788987654 3455 47999999999987532211 11122334444444444334
Q ss_pred -CCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCC
Q 002941 458 -KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFL 536 (863)
Q Consensus 458 -~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~ 536 (863)
.+ .+.++|+++|++|++.+++...+ .| .+|++...+||+....+...+. .
T Consensus 86 ~~~-~~~v~~t~g~~~a~~~~~~~l~~---------~g------------d~vl~~~p~~~~~~~~~~~~g~-~------ 136 (399)
T 1c7n_A 86 DIQ-TDWIINTAGVVPAVFNAVREFTK---------PG------------DGVIIITPVYYPFFMAIKNQER-K------ 136 (399)
T ss_dssp CCC-GGGEEEESSHHHHHHHHHHHHCC---------TT------------CEEEECSSCCTHHHHHHHTTTC-E------
T ss_pred CCC-hhhEEEcCCHHHHHHHHHHHhcC---------CC------------CEEEEcCCCcHhHHHHHHHcCC-E------
Confidence 22 46899999999999999986620 11 5799999999997654432210 0
Q ss_pred cCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCC
Q 002941 537 QQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKV 616 (863)
Q Consensus 537 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~ 616 (863)
+..++.... ...| ..| .+.+++.+.+
T Consensus 137 ----------------------~~~~~~~~~----------------~g~~--~~d--------~~~l~~~l~~------ 162 (399)
T 1c7n_A 137 ----------------------IIECELLEK----------------DGYY--TID--------FQKLEKLSKD------ 162 (399)
T ss_dssp ----------------------EEECCCEEE----------------TTEE--ECC--------HHHHHHHHTC------
T ss_pred ----------------------EEecccccC----------------CCCE--EEc--------HHHHHHHhcc------
Confidence 000111000 0000 011 2456666642
Q ss_pred CCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhc-----CCCCcEEEeccc
Q 002941 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLL-----GCVPDIACYGKL 690 (863)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~-----gv~PDivt~sKg 690 (863)
.++.+|++... ++..|.+ +|++++++|.++|++||++||+||+|++|++.|. ......+ +...++.+++|.
T Consensus 163 -~~~~~v~~~~~-~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~ 239 (399)
T 1c7n_A 163 -KNNKALLFCSP-HNPVGRV-WKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKT 239 (399)
T ss_dssp -TTEEEEEEESS-BTTTTBC-CCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHH
T ss_pred -CCCcEEEEcCC-CCCCCcC-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhh
Confidence 24556665544 7888865 5788999999999999999999999999987774 2223222 223344578999
Q ss_pred cC-CCCCCceeeecc-HHHHHhhhcCCccceeecccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHH
Q 002941 691 LT-GGVIPLAATLAT-NAVFDSFVGDSKLKALLHGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (863)
Q Consensus 691 Lg-gG~~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l 767 (863)
++ +| +++|+++++ +++++.+... ...+++ +.++++++++.++|+.. +++.+++.+..+..++.+.+.
T Consensus 240 ~~~~G-~r~G~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~- 309 (399)
T 1c7n_A 240 FNIAG-MGMSNIIIKNPDIRERFTKS------RDATSGMPFTTLGYKACEICYKEC--GKWLDGCIKVIDKNQRIVKDF- 309 (399)
T ss_dssp HTCGG-GCCEEEECCCHHHHHHHHHH------HHHTTCCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHH-
T ss_pred ccccc-hheEEEEECCHHHHHHHHHH------HhhcccCCCCHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHH-
Confidence 98 78 899999996 6788887641 233444 57999999999999853 445666666666666655443
Q ss_pred HHHHhc-CCCeeEecccceEE-EEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHH
Q 002941 768 IQQISS-HRTVQRVVALGTLC-AIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPE 837 (863)
Q Consensus 768 ~~~~~~-~p~v~~vrg~Gl~~-~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~e 837 (863)
+++ .|.+..+++.|.++ .+++.... .....+...|+ ++||++.|. .+.+|+.++. +++
T Consensus 310 ---L~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~--~~~ 377 (399)
T 1c7n_A 310 ---FEVNHPEIKAPLIEGTYLQWIDFRALK-------MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA--PSS 377 (399)
T ss_dssp ---HHHHCTTSBCCCCSBSSEEEEECGGGC-------CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS--CHH
T ss_pred ---HHhhCCCCeEecCCceEEEEEEcccCC-------CCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc--CHH
Confidence 333 45554456666544 57876421 01456888887 689999874 3689998654 478
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002941 838 VCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 838 eid~~v~~L~~~l~~l~ 854 (863)
++++++++|.++++++.
T Consensus 378 ~l~~~l~~l~~~l~~~~ 394 (399)
T 1c7n_A 378 VIQESLERLNKALKDLK 394 (399)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987764
No 55
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.92 E-value=3.5e-24 Score=239.02 Aligned_cols=354 Identities=10% Similarity=0.023 Sum_probs=238.0
Q ss_pred cccceEEEEcCCCccc-ceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcC--CC
Q 002941 383 CGENFSVYQDQKNKFI-GQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG--KG 459 (863)
Q Consensus 383 ~G~G~~v~D~dG~~~~-~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p--~~ 459 (863)
+|+|+++||.+|++|. +.++|+.++. ..++ .+|+|.+|+.+++++..+.. ..+..+...++++.|++..+ ..
T Consensus 15 ~~~g~~~~d~~~~~~~~~~~i~l~~~~--~~~~--~~~~v~~a~~~~~~~~~~~y-~~~~~~~~~~l~~~l~~~~g~~~~ 89 (391)
T 4dq6_A 15 SNNFSSKWSEMEKKYGTNDLLPMWVAD--MDFK--AAPCIIDSLKNRLEQEIYGY-TTRPDSYNESIVNWLYRRHNWKIK 89 (391)
T ss_dssp TTTTBHHHHCHHHHHSCSCSEECCSSS--CSSC--CCHHHHHHHHHHHTTCCCCC-BCCCHHHHHHHHHHHHHHHCCCCC
T ss_pred ccCCceeeeecccccCCCCceeccccC--CCCC--CCHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHHhCCCCc
Confidence 5899999999876221 2458887652 2232 68999999999998643322 12345677888999988776 22
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~ 539 (863)
.++++|+++|++|++.+++.+.+ .| .+||+...+||+....+...+..
T Consensus 90 -~~~v~~~~g~~~a~~~~~~~~~~---------~g------------d~vl~~~~~~~~~~~~~~~~g~~---------- 137 (391)
T 4dq6_A 90 -SEWLIYSPGVIPAISLLINELTK---------AN------------DKIMIQEPVYSPFNSVVKNNNRE---------- 137 (391)
T ss_dssp -GGGEEEESCHHHHHHHHHHHHSC---------TT------------CEEEECSSCCTHHHHHHHHTTCE----------
T ss_pred -HHHeEEcCChHHHHHHHHHHhCC---------CC------------CEEEEcCCCCHHHHHHHHHcCCe----------
Confidence 46899999999999999987721 12 57999999999976544322110
Q ss_pred cccCCCcccCCCcccccCceeeecCcch-hhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCC
Q 002941 540 WYSGRGLFLDPPTVFMYNSKWILSLPEW-LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618 (863)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~ 618 (863)
.+.+|.. +. ...| .-| .+.+++.+. .
T Consensus 138 ---------------------~~~~~~~~~~--------------~~~~--~~d--------~~~l~~~l~-------~- 164 (391)
T 4dq6_A 138 ---------------------LIISPLQKLE--------------NGNY--IMD--------YEDIENKIK-------D- 164 (391)
T ss_dssp ---------------------EEECCCEECT--------------TSCE--ECC--------HHHHHHHCT-------T-
T ss_pred ---------------------EEeeeeeecC--------------CCce--Eee--------HHHHHHHhh-------c-
Confidence 0111100 00 0000 001 244555553 2
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhc-----CCCCcEEEeccccC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLL-----GCVPDIACYGKLLT 692 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~-----gv~PDivt~sKgLg 692 (863)
+.+|+++.. ++..|.+. +++.+++|.++|++||++||+||+|++|++.|... ....+ +....+.+++|+++
T Consensus 165 -~~~v~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g 241 (391)
T 4dq6_A 165 -VKLFILCNP-HNPVGRVW-TKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFN 241 (391)
T ss_dssp -EEEEEEESS-BTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHT
T ss_pred -CCEEEEECC-CCCCCcCc-CHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhcc
Confidence 555666554 88888754 67779999999999999999999999998877522 22222 22233457899997
Q ss_pred -CCCCCceeeeccH-HHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 002941 693 -GGVIPLAATLATN-AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (863)
Q Consensus 693 -gG~~Pigav~~~~-~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~ 770 (863)
+| +++|++++++ ++++.+... ..+..+++.++++++++.++|+. .+++.++..+..+..++.+.+.
T Consensus 242 ~~G-~r~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~---- 309 (391)
T 4dq6_A 242 IAG-LQSSYVVLPDEKDYKLLDDA-----FTRIDIKRNNCFSLVATEASYNN--GESWLESFLEYLESNIDFAIKY---- 309 (391)
T ss_dssp CGG-GCCEEEECCSHHHHHHHHHH-----HHHTTCCCCCHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHH----
T ss_pred Ccc-cceEEEEeCCHHHHHHHHHH-----HHhhcCCCCCHHHHHHHHHHHhc--hHHHHHHHHHHHHHHHHHHHHH----
Confidence 77 8999999875 888877642 12345678899999999999985 3345566666666666655433
Q ss_pred Hhc-CCCeeEecccceEEE-EEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec-------CCEEEEecCCCCcHHHHH
Q 002941 771 ISS-HRTVQRVVALGTLCA-IELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-------GNVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 771 ~~~-~p~v~~vrg~Gl~~~-iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-------g~~lr~~ppl~~t~eeid 840 (863)
+++ .|.+..+++.|.++. +++.... .....+.+.|+++ ||+++++ .+.+|+.++ +++++++
T Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~ 380 (391)
T 4dq6_A 310 INENMPKLKVRKPEGTYLLWVDFSALG-------LSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA--CPRSMLE 380 (391)
T ss_dssp HHHHCTTSEECCCSBSSEEEEECGGGC-------CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC--SCHHHHH
T ss_pred HHhhCCCCEecCCCccEEEEEEhhhcC-------CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc--CCHHHHH
Confidence 333 455555666666555 7776421 0256788999998 9999873 278999865 7899999
Q ss_pred HHHHHHHHHH
Q 002941 841 QLLLKLYQRL 850 (863)
Q Consensus 841 ~~v~~L~~~l 850 (863)
+++++|.+++
T Consensus 381 ~~l~~l~~~l 390 (391)
T 4dq6_A 381 EALIRIKNAI 390 (391)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 56
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.92 E-value=2.4e-23 Score=234.26 Aligned_cols=347 Identities=13% Similarity=0.025 Sum_probs=227.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCC-hHHHHHHHHHHhhc----CCC-CCCeEEEeCChhhH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-EPALECAELLLQGV----GKG-WASRAYFSDNGSTA 473 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~-~~~~eLae~L~~~~----p~~-~~~~v~f~~SGSeA 473 (863)
.++|+.+|... ..|| .+|.|.+|+.+++++..... . +.. ....+|.++|++++ +.+ ..+.++|+++|++|
T Consensus 35 ~~idl~~g~~~-~~~~-~~~~v~~a~~~~~~~~~~~~-~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a 110 (407)
T 2zc0_A 35 KLISLAAGDPD-PELI-PRAVLGEIAKEVLEKEPKSV-M-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGA 110 (407)
T ss_dssp CCEECCSCCCC-TTTS-CHHHHHHHHHHHHHHCGGGG-S-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHH
T ss_pred ceEeCCCCCCC-chhC-CHHHHHHHHHHHHhhccccc-c-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHH
Confidence 78999887754 3477 78999999999998743111 1 111 12344455555544 511 13689999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcc
Q 002941 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (863)
Q Consensus 474 vE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (863)
++.+++.+++ +| .+|++...+||+....+. ..|..
T Consensus 111 ~~~~~~~~~~---------~g------------d~vl~~~p~~~~~~~~~~-~~g~~----------------------- 145 (407)
T 2zc0_A 111 LDLLGRVLID---------PG------------DVVITENPSYINTLLAFE-QLGAK----------------------- 145 (407)
T ss_dssp HHHHHHHHCC---------TT------------CEEEEEESCCHHHHHHHH-TTTCE-----------------------
T ss_pred HHHHHHHhcC---------CC------------CEEEEeCCChHHHHHHHH-HcCCE-----------------------
Confidence 9999998721 12 579999999999644322 11100
Q ss_pred cccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE-EccccccC
Q 002941 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI-IEPVVHAA 632 (863)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvI-vEPViqg~ 632 (863)
+..++... ...| .+.+++.+... .....++.+|+ ++.. ++.
T Consensus 146 -----~~~v~~~~----------------------~~~d--------~~~l~~~l~~~--~~~~~~~~~v~~~~~~-~np 187 (407)
T 2zc0_A 146 -----IEGVPVDN----------------------DGMR--------VDLLEEKIKEL--KAKGQKVKLIYTIPTG-QNP 187 (407)
T ss_dssp -----EEEEEEET----------------------TEEC--------HHHHHHHHHHH--HHTTCCEEEEEECCSS-CTT
T ss_pred -----EEEcccCC----------------------CCCC--------HHHHHHHHHhh--hcccCCceEEEECCCC-CCC
Confidence 00111100 0011 23455555410 00113567765 4444 888
Q ss_pred CCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCC---CCcEEEeccccCCCCCCceeeeccHHHH
Q 002941 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGC---VPDIACYGKLLTGGVIPLAATLATNAVF 708 (863)
Q Consensus 633 gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv---~PDivt~sKgLggG~~Pigav~~~~~i~ 708 (863)
.|.+ .|.+++++|.++|++||+++|+||+++++.+.|.. .....++. ..++.+++|.++.| +++|+++++++++
T Consensus 188 tG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~ 265 (407)
T 2zc0_A 188 MGVT-MSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGTG-FRIGWIIAEGEIL 265 (407)
T ss_dssp TCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTCTT-SCCEEEECCHHHH
T ss_pred CCcC-CCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccCCC-cceEEEecCHHHH
Confidence 8975 57899999999999999999999999998776653 33333432 23556889999988 8999999999999
Q ss_pred HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcCh-hhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-cccceE
Q 002941 709 DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDP-QTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VALGTL 786 (863)
Q Consensus 709 ~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~-~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-rg~Gl~ 786 (863)
+.+.. ..+..+++.++++++++.++|+....+ ++.+++++..+..++.+.+.+.+. .|.+..+ ...|.+
T Consensus 266 ~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~ 336 (407)
T 2zc0_A 266 KKVLM------QKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENH---LPNAEFTKPIAGMF 336 (407)
T ss_dssp HHHHH------HHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHH---CTTSCBCCCSBSSE
T ss_pred HHHHH------HHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCEEecCCCcEE
Confidence 88764 124466778999999999988754212 344555555556666554444332 2322222 345778
Q ss_pred EEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec---------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 787 CAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 787 ~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~---------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+.+.+.... ....+.+.|.++ ||++.+. .+.+|+.++.. +++++++++++|.++++++
T Consensus 337 ~~~~~~~~~--------~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 337 VMFFLPEGA--------DGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp EEEECSTTC--------CHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCC--------CHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 888875321 145788889988 9999863 36899987665 8999999999999988664
No 57
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.92 E-value=4e-23 Score=231.28 Aligned_cols=358 Identities=10% Similarity=0.006 Sum_probs=221.3
Q ss_pred ecccceEEEEcCCCcc-cceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCCh-HHHHHHHHHHhhcC--
Q 002941 382 RCGENFSVYQDQKNKF-IGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYE-PALECAELLLQGVG-- 457 (863)
Q Consensus 382 ~~G~G~~v~D~dG~~~-~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~-~~~eLae~L~~~~p-- 457 (863)
++|+|+++||.+|+++ .++|+|+.++. ..+| .+|+|.+|+.+++++..... .....+ ...++++.+.+..+
T Consensus 10 ~~~~~~~~~d~~~~~~~~~~~i~l~~~~--~~~~--~~~~v~~a~~~~~~~~~~~y-~~~~~~~lr~~la~~l~~~~g~~ 84 (390)
T 1d2f_A 10 RHGTWCTQWDYVADRFGTADLLPFTISD--MDFA--TAPCIIEALNQRLMHGVFGY-SRWKNDEFLAAIAHWFSTQHYTA 84 (390)
T ss_dssp --------------------CEECCSSS--CSSC--CCHHHHHHHHHHHTTCCCCC-CCSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCCCccchhhhccccCCCCeeEeeecC--CCCC--CCHHHHHHHHHHHhCCCCCC-CCCChHHHHHHHHHHHHHhcCCC
Confidence 3589999999998621 12689987653 3466 58999999999987532111 111334 55566666655434
Q ss_pred CCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCc
Q 002941 458 KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537 (863)
Q Consensus 458 ~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~ 537 (863)
.. .+.++|+++|++|++.+++...+ .| .+|++...+|||....+...+. .
T Consensus 85 ~~-~~~v~~t~g~~~al~~~~~~l~~---------~g------------d~vl~~~p~y~~~~~~~~~~g~-~------- 134 (390)
T 1d2f_A 85 ID-SQTVVYGPSVIYMVSELIRQWSE---------TG------------EGVVIHTPAYDAFYKAIEGNQR-T------- 134 (390)
T ss_dssp CC-GGGEEEESCHHHHHHHHHHHSSC---------TT------------CEEEEEESCCHHHHHHHHHTTC-E-------
T ss_pred CC-HHHEEEcCCHHHHHHHHHHHhcC---------CC------------CEEEEcCCCcHHHHHHHHHCCC-E-------
Confidence 22 36899999999999999987620 12 5799999999997654432210 0
Q ss_pred CCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 002941 538 QPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (863)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~ 617 (863)
+..++.... ...| ..| .+.+++.+.+
T Consensus 135 ---------------------~~~v~~~~~----------------~~~~--~~d--------~~~l~~~l~~------- 160 (390)
T 1d2f_A 135 ---------------------VMPVALEKQ----------------ADGW--FCD--------MGKLEAVLAK------- 160 (390)
T ss_dssp ---------------------EEEEECEEC----------------SSSE--ECC--------HHHHHHHHTS-------
T ss_pred ---------------------EEEeecccC----------------CCcc--ccC--------HHHHHHHhcc-------
Confidence 011111100 0000 011 2456666642
Q ss_pred CcEEEEEE-ccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcCCC-Cc-EEEeccccC-
Q 002941 618 GCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCV-PD-IACYGKLLT- 692 (863)
Q Consensus 618 ~~iAAvIv-EPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~-PD-ivt~sKgLg- 692 (863)
.++.+|++ .| ++..|.+. |.+++++|.++|++||++||+||+|++|++.|..+ ....++.. +| +.+++|+++
T Consensus 161 ~~~~~v~l~~p--~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~~s~sK~~~~ 237 (390)
T 1d2f_A 161 PECKIMLLCSP--QNPTGKVW-TCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNI 237 (390)
T ss_dssp TTEEEEEEESS--CTTTCCCC-CTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTC
T ss_pred CCCeEEEEeCC--CCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhhccCccHhhcc
Confidence 24555554 55 78888664 67899999999999999999999999998777532 22222111 13 778999998
Q ss_pred CCCCCceeeecc-HHHHHhhhcCCccceeec-ccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHH
Q 002941 693 GGVIPLAATLAT-NAVFDSFVGDSKLKALLH-GHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQ 769 (863)
Q Consensus 693 gG~~Pigav~~~-~~i~~~l~~~~~~~~~~~-~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~ 769 (863)
+| +++|+++++ +++++.+... .+ ..+| +.++++++++.++|+.. +++.+++++..+..++.+.+.+
T Consensus 238 ~G-~r~G~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L-- 306 (390)
T 1d2f_A 238 PA-LTGAYGIIENSSSRDAYLSA------LKGRDGLSSPSVLALTAHIAAYQQG--APWLDALRIYLKDNLTYIADKM-- 306 (390)
T ss_dssp GG-GCCEEEEECSHHHHHHHHHH------HHTTSCCCSCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cC-hhheEEEECCHHHHHHHHHH------HhhhcccCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHH--
Confidence 78 799999985 7888877541 23 4566 78999999999999853 4456666666666666554443
Q ss_pred HHhc-CCCeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHH
Q 002941 770 QISS-HRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVC 839 (863)
Q Consensus 770 ~~~~-~p~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eei 839 (863)
.+ .|.+..+++.| .++.+++.... . ....+.+.|. ++||++.+. .+.+|+.++. +++++
T Consensus 307 --~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~~l 375 (390)
T 1d2f_A 307 --NAAFPELNWQIPQSTYLAWLDLRPLN----I---DDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC--PRSKL 375 (390)
T ss_dssp --HHHCSSCCCCCCSBCSEEEEECGGGC----C---CHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS--CHHHH
T ss_pred --HhhCCCCEEecCCccEEEEEEccccC----C---CHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC--CHHHH
Confidence 33 45444455665 44567775420 0 1457888898 689999874 3689998664 58899
Q ss_pred HHHHHHHHHHHHHH
Q 002941 840 SQLLLKLYQRLEEF 853 (863)
Q Consensus 840 d~~v~~L~~~l~~l 853 (863)
++++++|.++++++
T Consensus 376 ~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 376 EKGVAGLINAIRAV 389 (390)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998887653
No 58
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.91 E-value=1.2e-22 Score=224.36 Aligned_cols=332 Identities=12% Similarity=0.098 Sum_probs=226.3
Q ss_pred ccceEEEE-cCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCC
Q 002941 384 GENFSVYQ-DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS 462 (863)
Q Consensus 384 G~G~~v~D-~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~ 462 (863)
|.+.+.++ .+|+ +++|+.++. +.++ .+|+|.+|+.++++++.. ++++...+|.++|+++++.. .+
T Consensus 14 g~~~~~~~~~~~~----~~idl~~~~--~~~~--~~~~v~~a~~~~~~~~~~-----y~~~~~~~l~~~la~~~~~~-~~ 79 (361)
T 3ftb_A 14 GGDIYTEGVFKGR----ELLDYSSNI--NPLG--IPKSFLNNIDEGIKNLGV-----YPDVNYRRLNKSIENYLKLK-DI 79 (361)
T ss_dssp ------------------CEETTCCC--CTTC--SCHHHHTTHHHHHHGGGS-----CCCTTCHHHHHHHHHHHTCC-SC
T ss_pred CCCHHHHhhcCCC----CEEEecCCC--CCCC--CCHHHHHHHHHHHHHhcC-----CCCccHHHHHHHHHHHhCCC-cc
Confidence 44444444 4777 899999865 3455 479999999999987533 23444578888998888743 46
Q ss_pred eEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCccc
Q 002941 463 RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYS 542 (863)
Q Consensus 463 ~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~ 542 (863)
.++|++||++|++.+++.+ .+||+...+||+....+...+..
T Consensus 80 ~i~~~~g~t~al~~~~~~~-------------------------d~vi~~~~~~~~~~~~~~~~g~~------------- 121 (361)
T 3ftb_A 80 GIVLGNGASEIIELSISLF-------------------------EKILIIVPSYAEYEINAKKHGVS------------- 121 (361)
T ss_dssp EEEEESSHHHHHHHHHTTC-------------------------SEEEEEESCCTHHHHHHHHTTCE-------------
T ss_pred eEEEcCCHHHHHHHHHHHc-------------------------CcEEEecCChHHHHHHHHHcCCe-------------
Confidence 8999999999999988754 25999999999875543322110
Q ss_pred CCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 002941 543 GRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622 (863)
Q Consensus 543 ~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAA 622 (863)
+..++.... ..-+ .+.+++.+. . ..+.
T Consensus 122 ----------------~~~~~~~~~---------------------~~~~--------~~~l~~~l~-------~-~~~v 148 (361)
T 3ftb_A 122 ----------------VVFSYLDEN---------------------MCID--------YEDIISKID-------D-VDSV 148 (361)
T ss_dssp ----------------EEEEECCTT---------------------SCCC--------HHHHHHHTT-------T-CSEE
T ss_pred ----------------EEEeecCcc---------------------cCCC--------HHHHHHhcc-------C-CCEE
Confidence 001111100 0001 134555553 2 3355
Q ss_pred EEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCc
Q 002941 623 LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPL 698 (863)
Q Consensus 623 vIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pi 698 (863)
++..| ++..|.+. |.+.+++|.++|++||+++|+||++++|++.+........+..++++ +++|.++ +| +++
T Consensus 149 ~i~~p--~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~ 224 (361)
T 3ftb_A 149 IIGNP--NNPNGGLI-NKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPG-IRF 224 (361)
T ss_dssp EEETT--BTTTTBCC-CHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGG-GCC
T ss_pred EEeCC--CCCCCCCC-CHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCC-cce
Confidence 56667 68888654 77789999999999999999999999887752233344444445544 6799998 77 899
Q ss_pred eeee-ccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 002941 699 AATL-ATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (863)
Q Consensus 699 gav~-~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v 777 (863)
|+++ +++++++.+.. ...+++.|+++++++.++|+ ++++.++..+..+.+++.+. +.++++|.+
T Consensus 225 g~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~l~----~~l~~~~~~ 289 (361)
T 3ftb_A 225 GYGITNNKEIAAKIKA--------KQNPWNINCFAEMAAINCLK---DTNYIEESLLWIKKERKRFI----EELNKIGFI 289 (361)
T ss_dssp EEEEESCHHHHHHHHT--------TSCTTCSCHHHHHHHHHTSS---CHHHHHHHHHHHHHHHHHHH----HHHHHSSSE
T ss_pred eEEEeCCHHHHHHHHh--------hCCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHH----HHHHhCCCC
Confidence 9998 89999998875 23467889999999998887 34556666666666666553 344567777
Q ss_pred e-EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 778 Q-RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 778 ~-~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
. .+++.|.++.+.+.... ...+.+.|.++||++++. .+.+|+.++ +++++++++++|++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~---------~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~ 357 (361)
T 3ftb_A 290 KRVFSPHANFVLCRLENIS---------GEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK---DEKKNTKFLRALKGV 357 (361)
T ss_dssp EEEECCSSSEEEEEESSSC---------HHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred ceecCCCCeEEEEEcCCCC---------HHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHH
Confidence 7 77888999998886522 567889999999999874 378999853 888888888888776
Q ss_pred HH
Q 002941 850 LE 851 (863)
Q Consensus 850 l~ 851 (863)
.+
T Consensus 358 ~~ 359 (361)
T 3ftb_A 358 EN 359 (361)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 59
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.91 E-value=2.6e-23 Score=233.49 Aligned_cols=346 Identities=13% Similarity=0.045 Sum_probs=229.1
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc--ccCCCCCChHHHHHHHHHHhhcCCCC--CCeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKGW--ASRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~p~~~--~~~v~f~~SGSeAvE 475 (863)
+++|+.+|..+ +++ .+|+|.+|+.+++++... +....+..+...+++++|++..+... .+.++|+++|++|++
T Consensus 40 ~~id~~~g~~~-~~~--~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~ 116 (407)
T 3nra_A 40 RPVDFSHGDVD-AHE--PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALF 116 (407)
T ss_dssp CCEETTSCCTT-TSC--CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred ceeeecCcCCC-CCC--CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHH
Confidence 48999886444 344 589999999999886422 11123456778889999998876420 158999999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.+++...+ .| .+|++...+||+....+...+. .
T Consensus 117 ~~~~~l~~---------~g------------d~vl~~~~~~~~~~~~~~~~g~-~------------------------- 149 (407)
T 3nra_A 117 LAVAATVA---------RG------------DKVAIVQPDYFANRKLVEFFEG-E------------------------- 149 (407)
T ss_dssp HHHHTTCC---------TT------------CEEEEEESCCTHHHHHHHHTTC-E-------------------------
T ss_pred HHHHHhCC---------CC------------CEEEEcCCcccchHHHHHHcCC-E-------------------------
Confidence 99986521 12 5799999999876543332211 0
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
+..++.. +. ... ...+ .-| .+.+++.+.+ +..+.+++.| +++.|.
T Consensus 150 ---~~~~~~~--~~---------~~~--~~~~--~~d--------~~~l~~~l~~-------~~~~v~~~~p--~nptG~ 194 (407)
T 3nra_A 150 ---MVPVQLD--YV---------SAD--ETRA--GLD--------LTGLEEAFKA-------GARVFLFSNP--NNPAGV 194 (407)
T ss_dssp ---EEEEEBC--CC---------SSC--CSSC--CBC--------HHHHHHHHHT-------TCCEEEEESS--CTTTCC
T ss_pred ---EEEeecc--cc---------ccc--CcCC--CcC--------HHHHHHHHhh-------CCcEEEEcCC--CCCCCc
Confidence 0001110 00 000 0000 011 2456666652 2334455666 788886
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcC-----CCCcEEEeccccC-CCCCCceeeeccHHHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLG-----CVPDIACYGKLLT-GGVIPLAATLATNAVF 708 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~g-----v~PDivt~sKgLg-gG~~Pigav~~~~~i~ 708 (863)
+ +|.+.+++|.++|++||+++|+||+|++|++.|..+ ....++ ...++.++||+++ .| +++|+++++++++
T Consensus 195 ~-~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~ 272 (407)
T 3nra_A 195 V-YSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSG-YRLGVAFGSRAII 272 (407)
T ss_dssp C-CCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGG-GCCEEEEECHHHH
T ss_pred c-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCe-eeEEEEEcCHHHH
Confidence 4 478899999999999999999999999988877643 333332 2334557899998 77 8999999999999
Q ss_pred HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEE
Q 002941 709 DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLC 787 (863)
Q Consensus 709 ~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~ 787 (863)
+.+.. ..+.++++.++++++++.++|+. ..++.++..+..+.+++.+ .+.++++|.+..+... |.++
T Consensus 273 ~~l~~------~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~~l----~~~L~~~~~~~~~~~~~~~~~ 340 (407)
T 3nra_A 273 ARMEK------LQAIVSLRAAGYSQAVLRGWFDE--APGWMEDRIARHQAIRDEL----LHVLRGCEGVFARTPQAGSYL 340 (407)
T ss_dssp HHHHH------HHHHHTSSSCHHHHGGGGGTTCC--CTTHHHHHHHHHHHHHHHH----HHHHHTSTTCBCCCCSBSSEE
T ss_pred HHHHH------HHhhhccCCChHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHH----HHHHhcCCCceeccCCeeEEE
Confidence 98864 23556778889888887777652 2344555555555555544 3444556655444554 4777
Q ss_pred EEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 788 AIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 788 ~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.+.+.... .....+...|++ +||++.+. .+.+|+.++ .++++|++++++|.++++++
T Consensus 341 ~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~~~~~ 405 (407)
T 3nra_A 341 FPRLPKLA-------VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS--QDHEAAVAAARRIVTLVERY 405 (407)
T ss_dssp CCBCCCBS-------SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCC-------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHh
Confidence 77765421 025568888875 59999873 378999865 39999999999999988764
No 60
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.90 E-value=6.9e-23 Score=230.14 Aligned_cols=341 Identities=15% Similarity=0.087 Sum_probs=227.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCC-hHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~-~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~AL 478 (863)
+++|+.+|..+. .|| .+|.+.+|+.+++++..... ..+.. ....+|.++|+++++.+ .+.++|+++|++|++.++
T Consensus 33 ~~i~l~~g~~~~-~~~-~~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~~~al~~~~ 108 (397)
T 2zyj_A 33 GILSFAGGLPAP-ELF-PKEEAAEAAARILREKGEVA-LQYSPTEGYAPLRAFVAEWIGVR-PEEVLITTGSQQALDLVG 108 (397)
T ss_dssp TCEEESSCCCCG-GGC-CHHHHHHHHHHHHHHHHHHH-TSCCCTTCCHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHH
T ss_pred CceecCCCCCCc-hhC-CHHHHHHHHHHHHHhcchhh-hCCCCCCCCHHHHHHHHHHhCCC-hhhEEEeccHHHHHHHHH
Confidence 789998877653 467 78999999999988643111 11222 23567788888877532 368999999999999999
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
+...+ .| .+|++...+||+....+...+. .
T Consensus 109 ~~~~~---------~g------------d~Vl~~~p~y~~~~~~~~~~g~-~---------------------------- 138 (397)
T 2zyj_A 109 KVFLD---------EG------------SPVLLEAPSYMGAIQAFRLQGP-R---------------------------- 138 (397)
T ss_dssp HHHCC---------TT------------CEEEEEESCCHHHHHHHHTTCC-E----------------------------
T ss_pred HHhCC---------CC------------CEEEEeCCCcHHHHHHHHHcCC-E----------------------------
Confidence 87620 12 5799999999997654332110 0
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE-EccccccCCCcee
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI-IEPVVHAAGGMHM 637 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvI-vEPViqg~gG~~~ 637 (863)
+..++... ...| .+.+++.+++ .++.+|+ +... ++..|.+
T Consensus 139 ~~~~~~~~----------------------~~~d--------~~~l~~~l~~-------~~~~~v~~~~~~-~nptG~~- 179 (397)
T 2zyj_A 139 FLTVPAGE----------------------EGPD--------LDALEEVLKR-------ERPRFLYLIPSF-QNPTGGL- 179 (397)
T ss_dssp EEEEEEET----------------------TEEC--------HHHHHHHHHH-------CCCSCEEECCBS-CTTTCCB-
T ss_pred EEecCcCC----------------------CCCC--------HHHHHHHHhh-------cCCeEEEECCCC-cCCCCCc-
Confidence 00111100 0011 2456666642 1344553 3333 7888865
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCCC---Cc---EEEeccccCCCCCCceeeeccHHHHHh
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCV---PD---IACYGKLLTGGVIPLAATLATNAVFDS 710 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~---PD---ivt~sKgLggG~~Pigav~~~~~i~~~ 710 (863)
.+.+++++|.++|++||+++|+||++++|++.|.. .....++.. ++ +.+++|++++| +++|++++++++++.
T Consensus 180 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~ 258 (397)
T 2zyj_A 180 TPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPG-LRVAFAVAHPEALQK 258 (397)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGG-GCCEEEECCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccccc-ceeEEEecCHHHHHH
Confidence 57889999999999999999999999999877753 333333322 23 45789999988 899999999999988
Q ss_pred hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc-CC-CeeEe-cccceEE
Q 002941 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS-HR-TVQRV-VALGTLC 787 (863)
Q Consensus 711 l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~-~p-~v~~v-rg~Gl~~ 787 (863)
+... .+..+++.++++++++.++|+.... +..+++.+..+..++.+.+. +.+ .| .+..+ ...|.++
T Consensus 259 l~~~------~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~----L~~~~~~g~~~~~~~~g~~~ 327 (397)
T 2zyj_A 259 LVQA------KQGADLHTPMLNQMLVHELLKEGFS-ERLERVRRVYREKAQAMLHA----LDREVPKEVRYTRPKGGMFV 327 (397)
T ss_dssp HHHH------HHHHHSSCCHHHHHHHHHHHTTTHH-HHHHHHHHHHHHHHHHHHHH----HHHHSCTTSEECCCSBSSEE
T ss_pred HHHH------HHhhcCCCCHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHH----HHHHCCCCeEEccCCccEEE
Confidence 7641 2445677799999998888864211 23344444444444444333 333 34 23333 3457888
Q ss_pred EEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 788 AIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 788 ~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.+++.... ....+.+.|.++||++.+. .+.+|+.++.. +++++++++++|.++++++.
T Consensus 328 ~~~~~~~~--------~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 328 WMELPKGL--------SAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL-DREGIAEGVRRLGRALKGLL 394 (397)
T ss_dssp EEECSTTC--------CHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCC--------CHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 88885321 1467889999999999872 37899987654 89999999999999987764
No 61
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.90 E-value=3.7e-22 Score=221.34 Aligned_cols=326 Identities=14% Similarity=0.083 Sum_probs=231.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.++|+.++. +.++ .+|+|.+|+.+++++.... .+..+...+|.++|+++++....+.++|+++|++|++.+++
T Consensus 31 ~~i~l~~~~--~~~~--~~~~v~~a~~~~~~~~~~~---~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~ 103 (367)
T 3euc_A 31 GLVKLDAME--NPYR--LPPALRSELAARLGEVALN---RYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLAL 103 (367)
T ss_dssp TCEECCSSC--CCCC--CCHHHHHHHHHHHHHHHTT---CSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHH
T ss_pred CeeEccCCC--CCCC--CCHHHHHHHHHHhhhhhhh---cCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHH
Confidence 688888765 4455 5799999999998853221 23344567899999998874113689999999999999998
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
..++ .| .+|++...+||+....+...+. .+
T Consensus 104 ~~~~---------~g------------d~Vl~~~~~~~~~~~~~~~~g~-----------------------------~~ 133 (367)
T 3euc_A 104 AAAR---------PG------------AKVMAPVPGFVMYAMSAQFAGL-----------------------------EF 133 (367)
T ss_dssp HTCC---------TT------------CEEEEEESCSCCSCHHHHTTTC-----------------------------EE
T ss_pred HHcC---------CC------------CEEEEcCCCHHHHHHHHHHcCC-----------------------------eE
Confidence 6621 12 5799999999987544322110 00
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..++....+ ..| .+.+++.+.+ .++.+|+++.. ++..|.+. +
T Consensus 134 ~~v~~~~~~---------------------~~d--------~~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~-~ 175 (367)
T 3euc_A 134 VGVPLRADF---------------------TLD--------RGAMLAAMAE-------HQPAIVYLAYP-NNPTGNLF-D 175 (367)
T ss_dssp EEEECCTTS---------------------CCC--------HHHHHHHHHH-------HCCSEEEEESS-CTTTCCCC-C
T ss_pred EEecCCCCC---------------------CCC--------HHHHHHHhhc-------cCCCEEEEcCC-CCCCCCCC-C
Confidence 111111000 011 2456666642 13456666665 88888755 6
Q ss_pred HHHHHHHHHHHHHc--CCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCcc
Q 002941 640 PLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKL 717 (863)
Q Consensus 640 ~~fL~~Lrelc~~~--gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~ 717 (863)
.+.+++|.++|++| |+++|+||+|++|+..+.......++...++.+++|...+| +++|++++++++++.+..
T Consensus 176 ~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~~~~---- 250 (367)
T 3euc_A 176 AADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAG-IRLGYVAGDPQWLEQLDK---- 250 (367)
T ss_dssp HHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCS-CCEEEEEECHHHHHHHGG----
T ss_pred HHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhcccc-cCceeeeeCHHHHHHHHH----
Confidence 77899999999999 99999999999987655555555556556677899995567 899999999999998864
Q ss_pred ceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcC
Q 002941 718 KALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN 797 (863)
Q Consensus 718 ~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~ 797 (863)
...+|+.++++++++.++|+. .++.++..+..+.+++.+ .+.+.++|.+....+.|.++.+.+. .
T Consensus 251 ----~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l----~~~l~~~~g~~~~~~~~~~~~~~~~--~-- 315 (367)
T 3euc_A 251 ----VRPPYNVNVLTEATALFALEH---VAVLDEQAAQLRAERSRV----AEGMAAHGGVTVFPSAANFLLARVP--D-- 315 (367)
T ss_dssp ----GCCSSCCCHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHH----HHHHHTSTTCEECCCSSSEEEEECS--C--
T ss_pred ----hCCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHH----HHHHHhCCCcEECCCCCeEEEEECC--C--
Confidence 234677999999999999885 444555566555666544 3445566666656778888888775 2
Q ss_pred CCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 798 AGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 798 ~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
...+.+.|.++||++++. .+.+|++. .+++++++++++|++++
T Consensus 316 -------~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~---~~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 316 -------AAQTFDRLLARKVLIKNVSKMHPLLANCLRVTV---STPEENAQFLEAFAASL 365 (367)
T ss_dssp -------HHHHHHHHHTTTEECEECGGGCGGGTTEEEEEC---CCHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHCCeEEEECCccCCCCCCEEEEec---CCHHHHHHHHHHHHHHh
Confidence 456888899999999874 27899984 39999999999998875
No 62
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.90 E-value=2e-22 Score=229.04 Aligned_cols=355 Identities=13% Similarity=0.076 Sum_probs=227.8
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc----cccCCCCCChHHHHHHHHHHhhcC---CCCCCeEEEeCChhh
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG----HVMFPENVYEPALECAELLLQGVG---KGWASRAYFSDNGST 472 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~----~~~~~~~~~~~~~eLae~L~~~~p---~~~~~~v~f~~SGSe 472 (863)
.++|+.+|.... .|| .+|+|.+|+.+++++.. .+.......+...++++.+.+..+ .. .+.++|+++|++
T Consensus 44 ~~idl~~g~~~~-~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~-~~~v~~t~G~~~ 120 (425)
T 1vp4_A 44 DAISFGGGVPDP-ETF-PRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLD-EDNLIFTVGSQQ 120 (425)
T ss_dssp TCEECCCCSCCG-GGS-CHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCC-GGGEEEEEHHHH
T ss_pred CceeCCCCCCCc-ccC-CHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCC-cccEEEeccHHH
Confidence 789998887653 477 78999999999987632 111111223444555555544325 22 368999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCc
Q 002941 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (863)
Q Consensus 473 AvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (863)
|++.+++...+ .| .+|++...+||+....+...+. .
T Consensus 121 al~~~~~~l~~---------~g------------d~Vl~~~p~y~~~~~~~~~~g~-~---------------------- 156 (425)
T 1vp4_A 121 ALDLIGKLFLD---------DE------------SYCVLDDPAYLGAINAFRQYLA-N---------------------- 156 (425)
T ss_dssp HHHHHHHHHCC---------TT------------CEEEEEESCCHHHHHHHHTTTC-E----------------------
T ss_pred HHHHHHHHhCC---------CC------------CEEEEeCCCcHHHHHHHHHcCC-E----------------------
Confidence 99999986520 12 5799999999997544322110 0
Q ss_pred ccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 002941 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (863)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~ 632 (863)
+..++... ...| .+.+++.+++.....++.++.+|++.|..++.
T Consensus 157 ------~~~v~~~~----------------------~~~d--------~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~np 200 (425)
T 1vp4_A 157 ------FVVVPLED----------------------DGMD--------LNVLERKLSEFDKNGKIKQVKFIYVVSNFHNP 200 (425)
T ss_dssp ------EEEEEEET----------------------TEEC--------HHHHHHHHHHHHHTTCGGGEEEEEEECSSCTT
T ss_pred ------EEEeccCC----------------------CCCC--------HHHHHHHHHhhhhcccCCCceEEEECCCCCCC
Confidence 00111100 0011 23444555320000012357776433322788
Q ss_pred CCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCCCCc---EEEeccccCCCCCCceeeeccHHHH
Q 002941 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD---IACYGKLLTGGVIPLAATLATNAVF 708 (863)
Q Consensus 633 gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PD---ivt~sKgLggG~~Pigav~~~~~i~ 708 (863)
.|.+ .+.+++++|.++|++||+++|+||++++|.+.|.. .....++..++ +.+++|++++| +++|+++++++++
T Consensus 201 tG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~ 278 (425)
T 1vp4_A 201 AGVT-TSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPG-LRIGMVAGSKEFI 278 (425)
T ss_dssp TCCC-CCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGG-GCEEEEECCHHHH
T ss_pred CCCc-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccccc-cceEEEeeCHHHH
Confidence 8865 57899999999999999999999999998776753 33333332232 44789999988 8999999999999
Q ss_pred HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-cccceEE
Q 002941 709 DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VALGTLC 787 (863)
Q Consensus 709 ~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-rg~Gl~~ 787 (863)
+.+... ....+++.++++++++.++|+....+++.+++++..+..++.+.+.+.+.+..++.+..+ ...|.++
T Consensus 279 ~~l~~~------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~ 352 (425)
T 1vp4_A 279 RKIVQA------KQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFI 352 (425)
T ss_dssp HHHHHH------HHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEE
T ss_pred HHHHHH------hhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEE
Confidence 887641 234567789999999999998642233444555555555555544443332221134333 3457888
Q ss_pred EEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 788 AIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 788 ~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.+++.... ...++++.|.++||++.|. .+.+|+.++. .+++++++++++|.++++++.
T Consensus 353 ~~~~~~~~--------~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~-~~~e~i~~~l~~l~~~l~~~~ 419 (425)
T 1vp4_A 353 WLTLPEGF--------DTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCL-PPDEKIVEGIKRLREVVLEYG 419 (425)
T ss_dssp EEECCTTC--------CTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCC--------CHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 88886421 1235778888899999873 3689998765 489999999999999987764
No 63
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.90 E-value=9.3e-23 Score=226.38 Aligned_cols=331 Identities=12% Similarity=0.077 Sum_probs=223.2
Q ss_pred EcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCCh
Q 002941 391 QDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNG 470 (863)
Q Consensus 391 D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SG 470 (863)
+.+|+ +++|+.++. +.+| .+|++.+|+.+++++... +......+|.++|+++++.+ .+.++|+++|
T Consensus 20 ~~~~~----~~idl~~~~--~~~~--~~~~v~~a~~~~~~~~~~-----y~~~~~~~l~~~la~~~~~~-~~~v~~~~g~ 85 (364)
T 1lc5_A 20 GISPD----QLLDFSANI--NPLG--MPVSVKRALIDNLDCIER-----YPDADYFHLHQALARHHQVP-ASWILAGNGE 85 (364)
T ss_dssp TSCGG----GSEECSSCC--CTTC--CCHHHHHHHHHTGGGGGS-----CCCTTCHHHHHHHHHHHTSC-GGGEEEESSH
T ss_pred CCCcc----ceEEecccc--CCCC--CCHHHHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHHHCcC-HHHEEECCCH
Confidence 45677 899998866 3466 479999999998876322 22334568888898888743 4689999999
Q ss_pred hhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCC
Q 002941 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (863)
Q Consensus 471 SeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~ 550 (863)
++|++.+++.+ . | .+|++...+||+....+...+. .
T Consensus 86 ~~al~~~~~~~-~----------g------------d~vl~~~p~y~~~~~~~~~~g~-~-------------------- 121 (364)
T 1lc5_A 86 TESIFTVASGL-K----------P------------RRAMIVTPGFAEYGRALAQSGC-E-------------------- 121 (364)
T ss_dssp HHHHHHHHHHH-C----------C------------SEEEEEESCCTHHHHHHHHTTC-E--------------------
T ss_pred HHHHHHHHHHc-C----------C------------CeEEEeCCCcHHHHHHHHHcCC-e--------------------
Confidence 99999999865 1 2 4699999999997654432211 0
Q ss_pred CcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 002941 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (863)
Q Consensus 551 p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViq 630 (863)
+..++.... ..++. +++.++.. .++..+.++++| +
T Consensus 122 --------~~~v~~~~~-----------------~~~~~--------------l~~~~~~~----~~~~~~v~i~~p--~ 156 (364)
T 1lc5_A 122 --------IRRWSLREA-----------------DGWQL--------------TDAILEAL----TPDLDCLFLCTP--N 156 (364)
T ss_dssp --------EEEEECCGG-----------------GTTCC--------------CTTHHHHC----CTTCCEEEEESS--C
T ss_pred --------EEEEeCCcc-----------------cccch--------------hHHHHHhc----cCCCCEEEEeCC--C
Confidence 011111100 00000 01112110 122234556788 6
Q ss_pred cCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chh-hhcCCCCcEEEeccccC-CCCCCceeee-ccHH
Q 002941 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTA-DLLGCVPDIACYGKLLT-GGVIPLAATL-ATNA 706 (863)
Q Consensus 631 g~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~-e~~gv~PDivt~sKgLg-gG~~Pigav~-~~~~ 706 (863)
+..|.+ .|.+++++|.++|++||+++|+||+|++|++.|.. ... +.++....+.+++|+++ +| +++|+++ ++++
T Consensus 157 nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~ 234 (364)
T 1lc5_A 157 NPTGLL-PERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPG-LRLGYLVNSDDA 234 (364)
T ss_dssp TTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTT-TCCEEEECCCHH
T ss_pred CCCCCC-CCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCc-cceEEEEECCHH
Confidence 788865 57899999999999999999999999988655432 111 22333334458899998 78 8999999 9999
Q ss_pred HHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceE
Q 002941 707 VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL 786 (863)
Q Consensus 707 i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~ 786 (863)
+++.+.. ...+++.|+++++++.++|+. .++.+++++..+..++.+. +.+.++|.+..+++.|.+
T Consensus 235 ~~~~l~~--------~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~----~~L~~~~~~~~~~~~g~~ 299 (364)
T 1lc5_A 235 AMARMRR--------QQMPWSVNALAALAGEVALQD---SAWQQATWHWLREEGARFY----QALCQLPLLTVYPGRANY 299 (364)
T ss_dssp HHHHHHH--------HSCTTCSCHHHHHHHHHGGGC---HHHHHHHHHHHHHHHHHHH----HHHHTSTTEEECCCSSSE
T ss_pred HHHHHHH--------hCCCCCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHH----HHHhcCCCCEECCCCCeE
Confidence 9988764 224678899999988888763 4455666666666666543 344556666656778888
Q ss_pred EEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 787 CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 787 ~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+.+++..+ ...+.+.|.++||++.+. .+.+|+. ..+++++++++++|++.++++.
T Consensus 300 ~~~~~~~~----------~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis---~~~~~~~~~l~~~l~~~~~~~~ 361 (364)
T 1lc5_A 300 LLLRCERE----------DIDLQRRLLTQRILIRSCANYPGLDSRYYRVA---IRSAAQNERLLAALRNVLTGIA 361 (364)
T ss_dssp EEEEESCT----------TCCHHHHHHTTTEECEECTTSTTCCTTEEEEE---CCCHHHHHHHHHHHHHHC----
T ss_pred EEEECCCc----------HHHHHHHHHHCCcEEeeCcccCCCCCCEEEEE---eCCHHHHHHHHHHHHHHhhccc
Confidence 88877532 234778889999999874 3689987 3468899999999988876653
No 64
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.83 E-value=2.3e-25 Score=250.09 Aligned_cols=355 Identities=12% Similarity=0.047 Sum_probs=229.6
Q ss_pred ecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcC--CC
Q 002941 382 RCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG--KG 459 (863)
Q Consensus 382 ~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p--~~ 459 (863)
++|+|+++||.+|+ .+.++|+..|. ..++ .+|++.+|+.+++++..+.... ...+...++++.|.+..+ ..
T Consensus 16 ~~~~g~~~~d~~g~--~~~~i~l~~~~--~~~~--~~~~v~~a~~~~~~~~~~~y~~-~~~~l~~~la~~l~~~~g~~~~ 88 (392)
T 3b1d_A 16 RLSHHTYKWKETET--DPQLLPAWIAD--MDFE--VMPEVKQAIHDYAEQLVYGYTY-ASDELLQAVLDWEKSEHQYSFD 88 (392)
Confidence 35899999999987 23789987654 2455 4799999999998753221111 123334444444444333 11
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~ 539 (863)
.++++|+++|++|++.+++.+.+ .| .+|++...+||+....+...+...
T Consensus 89 -~~~v~~~~g~~~a~~~~~~~~~~---------~g------------d~vl~~~p~~~~~~~~~~~~g~~~--------- 137 (392)
T 3b1d_A 89 -KEDIVFVEGVVPAISIAIQAFTK---------EG------------EAVLINSPVYPPFARSVRLNNRKL--------- 137 (392)
Confidence 36899999999999999997731 12 579999999999765443321100
Q ss_pred cccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 002941 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (863)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~ 619 (863)
+.+|... . ...|. .| .+.+++.+.+ .+
T Consensus 138 ----------------------~~~~~~~------------~--~g~~~--~d--------~~~l~~~l~~-------~~ 164 (392)
T 3b1d_A 138 ----------------------VSNSLKE------------E--NGLFQ--ID--------FEQLENDIVE-------ND 164 (392)
Confidence 0011000 0 00000 00 1334444421 23
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC----cchhhh--cCCCCcEEEeccccC-
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTADL--LGCVPDIACYGKLLT- 692 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~----~~a~e~--~gv~PDivt~sKgLg- 692 (863)
+.+|+++.. ++..|.+ ++++++++|.++|++||++||+||++++|++.|. .+.+.. .+..+++.++||+++
T Consensus 165 ~~~v~~~~~-~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 242 (392)
T 3b1d_A 165 VKLYLLCNP-HNPGGRV-WEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNI 242 (392)
Confidence 456666654 7888865 5677999999999999999999999999987763 333322 455567789999998
Q ss_pred CCCCCceeeeccH-HHHHhhhcCCccceeecccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 002941 693 GGVIPLAATLATN-AVFDSFVGDSKLKALLHGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (863)
Q Consensus 693 gG~~Pigav~~~~-~i~~~l~~~~~~~~~~~~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~ 770 (863)
+| +++|++++++ ++++.+... ...+++ +.++++++++.++|+.. +++.+++++..+..++.+.+ .
T Consensus 243 ~G-~r~G~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~----~ 309 (392)
T 3b1d_A 243 AG-TKNSYAIIENPTLCAQFKHQ------QLVNNHHEVSSLGYIATETAYRYG--KPWLVALKAVLEENIQFAVE----Y 309 (392)
Confidence 78 8999999875 488877642 233333 46899999999998742 34455666655555554433 3
Q ss_pred Hhc-CCCeeEecccceEEE-EEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHH
Q 002941 771 ISS-HRTVQRVVALGTLCA-IELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 771 ~~~-~p~v~~vrg~Gl~~~-iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid 840 (863)
+++ +|.+..+++.|.++. +++.... .....+++.|+ ++||++.|. .+.+|+. +..++++|+
T Consensus 310 l~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~e~i~ 380 (392)
T 3b1d_A 310 FAQEAPRLKVMKPQGTYLIWLDFSDYG-------LTDDALFTLLHDQAKVILNRGSDYGSEGELHARLN--IAAPKSLVE 380 (392)
Confidence 333 455555677777765 7775321 02446788886 789999873 2567775 455788999
Q ss_pred HHHHHHHHHHH
Q 002941 841 QLLLKLYQRLE 851 (863)
Q Consensus 841 ~~v~~L~~~l~ 851 (863)
+++++|.++++
T Consensus 381 ~~l~~l~~~l~ 391 (392)
T 3b1d_A 381 EICKRIVCCLP 391 (392)
Confidence 99999988764
No 65
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.89 E-value=3.6e-22 Score=222.43 Aligned_cols=330 Identities=11% Similarity=-0.021 Sum_probs=221.0
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCC-hHHHHHHHHHHhhc----CCC-CCC-eEEEeCChhh
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-EPALECAELLLQGV----GKG-WAS-RAYFSDNGST 472 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~-~~~~eLae~L~~~~----p~~-~~~-~v~f~~SGSe 472 (863)
+++|+.+|.. .+|. +|.|.+|+.+++++... ..+.. ....+|.++|++++ +.+ ..+ .++|+++|++
T Consensus 26 ~~idl~~~~~--~~~~--~~~v~~a~~~~~~~~~~---~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~ 98 (376)
T 2dou_A 26 GLIDLSIGST--DLPP--PEAPLKALAEALNDPTT---YGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQE 98 (376)
T ss_dssp CCEECSSCCC--CCCC--CHHHHHHHHHHTTCGGG---SSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHH
T ss_pred CEEeccCCCC--CCCC--CHHHHHHHHHHHhCCCc---CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHH
Confidence 7899988754 5664 79999999999865311 12333 24566777777765 532 113 8999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCc
Q 002941 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (863)
Q Consensus 473 AvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (863)
|++.+++...+ .| .+|++...+||+....+...+. .
T Consensus 99 a~~~~~~~l~~---------~g------------d~vl~~~p~y~~~~~~~~~~g~-~---------------------- 134 (376)
T 2dou_A 99 GLAHLLLALTE---------PE------------DLLLLPEVAYPSYFGAARVASL-R---------------------- 134 (376)
T ss_dssp HHHHHHHHHCC---------TT------------CEEEEESSCCHHHHHHHHHTTC-E----------------------
T ss_pred HHHHHHHHhcC---------CC------------CEEEECCCCcHhHHHHHHHcCC-E----------------------
Confidence 99999987620 12 5799999999997654432211 0
Q ss_pred ccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 002941 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (863)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~ 632 (863)
+..++.++.+ . .|. +.+++.+. .++.+|+++.. ++.
T Consensus 135 ------~~~~~~~~~~-------------------~--~d~--------~~l~~~l~--------~~~~~v~l~~p-~np 170 (376)
T 2dou_A 135 ------TFLIPLREDG-------------------L--ADL--------KAVPEGVW--------REAKVLLLNYP-NNP 170 (376)
T ss_dssp ------EEEECBCTTS-------------------S--BCG--------GGSCHHHH--------HHEEEEEECSS-CTT
T ss_pred ------EEEeeCCCCC-------------------C--CCH--------HHHHHhhc--------cCceEEEECCC-CCC
Confidence 0111111110 0 010 12333342 24566776643 788
Q ss_pred CCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhh---cCCCCcEEEeccccC-CCCCCceeeeccHHH
Q 002941 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADL---LGCVPDIACYGKLLT-GGVIPLAATLATNAV 707 (863)
Q Consensus 633 gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~---~gv~PDivt~sKgLg-gG~~Pigav~~~~~i 707 (863)
.|.+ .|.+++++|.++|++||+++|+||+|++|++.|... ..+. .+...++.+++|+++ +| +++|++++++++
T Consensus 171 tG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~ 248 (376)
T 2dou_A 171 TGAV-ADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAG-FRLGFALGSEEA 248 (376)
T ss_dssp TCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGG-GCCEEEEECHHH
T ss_pred cCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChh-heeEEEecCHHH
Confidence 8865 578999999999999999999999999987766422 2222 233344558899997 77 899999999999
Q ss_pred HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc-cceE
Q 002941 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-LGTL 786 (863)
Q Consensus 708 ~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-~Gl~ 786 (863)
++.+... .+..+++.++++++++.++|+.. +++.++.++..+..++.+.+ .+.++ +..+++ .|++
T Consensus 249 ~~~l~~~------~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~----~L~~~--~~~~~~~~~~~ 314 (376)
T 2dou_A 249 LARLERV------KGVIDFNQYAGVLRMGVEALKTP--KEVVRGYARVYRERALGMAE----ALKGV--LSLLPPRATMY 314 (376)
T ss_dssp HHHHHHH------HHHHCCCSCHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHH----HHTTT--SEECCCCBSSE
T ss_pred HHHHHHH------HHhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHH----HHHHh--cCccCCCeeEE
Confidence 9988641 24456778999999999988753 34555666656666655433 34444 333333 4667
Q ss_pred EEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 787 CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 787 ~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
+.+++.... ....+.+.|+++||++.+. .+.+|+.+. .+++++++++++|.+++
T Consensus 315 ~~~~~~~~~--------~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 315 LWGRLPEGV--------DDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALV--RPLEELLEAAKRIREAL 375 (376)
T ss_dssp EEEECCTTC--------CHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHTC
T ss_pred EEEECCCCC--------CHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHh
Confidence 778875321 1456888999999999874 378999865 38899999999998764
No 66
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.89 E-value=7.8e-22 Score=217.46 Aligned_cols=336 Identities=10% Similarity=0.031 Sum_probs=231.1
Q ss_pred cceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeE
Q 002941 385 ENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRA 464 (863)
Q Consensus 385 ~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v 464 (863)
++.++++.+|+ +++|+.++. +.++ .+|+|.+|+.+++++.. .++.+...+|.++|+++++.. .+.+
T Consensus 6 ~~~~~~~~~~~----~~i~l~~~~--~~~~--~~~~v~~a~~~~~~~~~-----~y~~~~~~~l~~~la~~~~~~-~~~i 71 (354)
T 3ly1_A 6 ESAAFTAPSTD----NPIRINFNE--NPLG--MSPKAQAAARDAVVKAN-----RYAKNEILMLGNKLAAHHQVE-APSI 71 (354)
T ss_dssp ---CCCCCCSS----SCEECSSCC--CSSC--CCHHHHHHHHHTGGGTT-----SCCHHHHHHHHHHHHHHTTSC-GGGE
T ss_pred ccccccCCCCC----ceEEccCCC--CCCC--CCHHHHHHHHHHHhhCc-----CCCCCchHHHHHHHHHHhCCC-hHHE
Confidence 45677888888 899999865 4555 58999999999887532 344566789999999998743 4689
Q ss_pred EEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCC
Q 002941 465 YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR 544 (863)
Q Consensus 465 ~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~ 544 (863)
+|+++|++|++.+++...+ .| .+|++...+||+....+...+..
T Consensus 72 ~~~~g~~~a~~~~~~~l~~---------~g------------d~vl~~~~~~~~~~~~~~~~g~~--------------- 115 (354)
T 3ly1_A 72 LLTAGSSEGIRAAIEAYAS---------LE------------AQLVIPELTYGDGEHFAKIAGMK--------------- 115 (354)
T ss_dssp EEESHHHHHHHHHHHHHCC---------TT------------CEEEEESSSCTHHHHHHHHTTCE---------------
T ss_pred EEeCChHHHHHHHHHHHhC---------CC------------CeEEECCCCchHHHHHHHHcCCE---------------
Confidence 9999999999999987621 12 57999999999865433322110
Q ss_pred CcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 002941 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI 624 (863)
Q Consensus 545 ~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvI 624 (863)
+..++....+ .-| .+.+++.+.+ + .++.+|+
T Consensus 116 --------------~~~~~~~~~~---------------------~~d--------~~~l~~~l~~-----~-~~~~~v~ 146 (354)
T 3ly1_A 116 --------------VTKVKMLDNW---------------------AFD--------IEGLKAAVAA-----Y-SGPSIVY 146 (354)
T ss_dssp --------------EEEECCCTTS---------------------CCC--------HHHHHHHHHT-----C-SSCEEEE
T ss_pred --------------EEEecCCCCC---------------------CCC--------HHHHHHHhcc-----C-CCCCEEE
Confidence 0111111000 011 2456666652 1 3455666
Q ss_pred EccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch-h---hhc-CCCCcEEEeccccC-CCCCCc
Q 002941 625 IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-A---DLL-GCVPDIACYGKLLT-GGVIPL 698 (863)
Q Consensus 625 vEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a-~---e~~-gv~PDivt~sKgLg-gG~~Pi 698 (863)
++.. ++..|.+. +.+.+++|.++| +||+++|+||+|++|++.|.... . ..+ +....+.+++|+++ .| +++
T Consensus 147 l~~p-~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~ 222 (354)
T 3ly1_A 147 LVNP-NNPTGTIT-PADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAG-MRV 222 (354)
T ss_dssp EESS-CTTTCCCC-CHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGG-GCC
T ss_pred EeCC-CCCcCCCc-CHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChh-hhh
Confidence 6554 78888665 566678888888 79999999999999887764211 1 222 33344557899998 77 899
Q ss_pred eeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee
Q 002941 699 AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ 778 (863)
Q Consensus 699 gav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~ 778 (863)
|++++++++++.+... ...++.++++++++.++|+ +.++.++.++..+..++.+.+.+.+. + +.
T Consensus 223 G~~~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~~~~~l~~~l~~~----~-~~ 286 (354)
T 3ly1_A 223 GYAVAHPTVIALMGRY--------VAGEKINFSGVDAALASMN---DSAFITYSKKSNDVSRQILLKALEDL----K-LP 286 (354)
T ss_dssp EEEECCHHHHHHHGGG--------TTCSCCCHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHHHHH----T-CC
T ss_pred eeeecCHHHHHHHHHh--------cCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHC----C-Ce
Confidence 9999999999988752 2237889999999998877 33555666666666666655444332 2 33
Q ss_pred EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE----ecCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 779 RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR----PLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 779 ~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~----p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.+++.|.++.+++..+ ...+.+.|.++||+++ ...+.+|++. .+++++++++++|++++++
T Consensus 287 ~~~~~~~~~~~~~~~~----------~~~~~~~l~~~gi~v~g~~~~~~~~iRis~---~~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 287 YLPSEGNFVFHQLVVP----------LKDYQTHMADAGVLIGRAFPPADNWCRISL---GTPQEMQWVADTMREFRKK 351 (354)
T ss_dssp BCCCCSSEEEEECSSC----------HHHHHHHHHHTTEECCCCCTTCTTEEEEEC---CCHHHHHHHHHHHHHHHHT
T ss_pred ECCCCceEEEEECCCC----------HHHHHHHHHHCCEEEeecCCCCCCEEEEEc---CCHHHHHHHHHHHHHHHHh
Confidence 3466788888887642 4678889999999987 1237899983 3899999999999988753
No 67
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.89 E-value=1e-21 Score=220.61 Aligned_cols=338 Identities=12% Similarity=0.042 Sum_probs=217.9
Q ss_pred CCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc---CCC-CCChHHHHHHHHHHhhcCCCCCCeEEEeC
Q 002941 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM---FPE-NVYEPALECAELLLQGVGKGWASRAYFSD 468 (863)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~---~~~-~~~~~~~eLae~L~~~~p~~~~~~v~f~~ 468 (863)
||+ +|+|+.+ +.++|+..+|+|.+|+.++++++.... ... ..++...+|.++|+++++. +..++++
T Consensus 44 ~g~----~~i~~~~---~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~---~~~i~~~ 113 (401)
T 2bwn_A 44 GKQ----DITVWCG---NDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK---EAALVFS 113 (401)
T ss_dssp CEE----EEEECSC---SCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC---SEEEEES
T ss_pred CCC----cEEEeeC---CCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC---CcEEEEC
Confidence 567 8999887 334454347999999999998865321 111 2346788999999999974 3455558
Q ss_pred ChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCccc
Q 002941 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (863)
Q Consensus 469 SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~ 548 (863)
||++|++.+++++.+ . . +| ..|++... +|+....++...+..
T Consensus 114 sG~~a~~~~~~~l~~-~--~----~g------------d~Vl~~~~-~~~~~~~~~~~~g~~------------------ 155 (401)
T 2bwn_A 114 SAYNANDATLSTLRV-L--F----PG------------LIIYSDSL-NHASMIEGIKRNAGP------------------ 155 (401)
T ss_dssp CHHHHHHHHHHHHHH-H--S----TT------------CEEEEETT-CCHHHHHHHHHSCCC------------------
T ss_pred CcHHHHHHHHHHHhc-C--C----CC------------CEEEECch-hhHHHHHHHHHcCCe------------------
Confidence 999999999887522 1 0 12 34665554 455444333221100
Q ss_pred CCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 002941 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (863)
Q Consensus 549 ~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPV 628 (863)
.+.+|. +| .+.+++.++. ..++++++|+++++
T Consensus 156 ------------~~~v~~------------------------~d--------~~~le~~l~~----~~~~~~~~v~~~~~ 187 (401)
T 2bwn_A 156 ------------KRIFRH------------------------ND--------VAHLRELIAA----DDPAAPKLIAFESV 187 (401)
T ss_dssp ------------EEEECT------------------------TC--------HHHHHHHHHH----SCTTSCEEEEEESB
T ss_pred ------------EEEEcC------------------------CC--------HHHHHHHHHh----hccCCceEEEEecC
Confidence 011110 11 2345566653 12246788999997
Q ss_pred cccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc--cccccCCcchhhhcCC--CCcEE--EeccccCCCCCCceeee
Q 002941 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT--GFWRLGVETTADLLGC--VPDIA--CYGKLLTGGVIPLAATL 702 (863)
Q Consensus 629 iqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T--GfGRtG~~~a~e~~gv--~PDiv--t~sKgLggG~~Pigav~ 702 (863)
+++.|.+.+ +++|.++|++||+++|+||+|+ .||++|..+. ..+++ .+|++ ++||+++. |.|+++
T Consensus 188 -~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~~~~~i~~~s~sK~~~~---~GG~~~ 258 (401)
T 2bwn_A 188 -YSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKAYGV---FGGYIA 258 (401)
T ss_dssp -CTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCGGGCSEEEEESSSTTCS---CCEEEE
T ss_pred -cCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee-eccCccccCcEEEeechhhccC---CCCEEe
Confidence 999998876 8999999999999999999998 3566776555 56665 35655 89999982 225688
Q ss_pred ccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc
Q 002941 703 ATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA 782 (863)
Q Consensus 703 ~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg 782 (863)
+++++++.+..... ...++.+.++++++++.++++.+++.+ .+++.+..+.+++.+.+.+.+. ....+ ..
T Consensus 259 ~~~~~~~~l~~~~~----~~~~~~~~~~~~~~a~~~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~---~~ 328 (401)
T 2bwn_A 259 ASARMVDAVRSYAP----GFIFSTSLPPAIAAGAQASIAFLKTAE-GQKLRDAQQMHAKVLKMRLKAL--GMPII---DH 328 (401)
T ss_dssp ECHHHHHHHHHHCH----HHHTSBCCCHHHHHHHHHHHHHHTSHH-HHHHHHHHHHHHHHHHHHHHHH--TCCBC---CC
T ss_pred cCHHHHHHHHHhCc----CceecCCCCHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHC--CCccc---CC
Confidence 89999888753110 112233457799999999999886642 1233333334444443344332 33322 22
Q ss_pred cceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------C-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 783 LGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 783 ~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.|.++.+.+... .....+.+.|+ ++||++.|. + +.+|+.++..++++++++++++|+++++++
T Consensus 329 ~~~~~~~~~~~~--------~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 329 GSHIVPVVIGDP--------VHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp SSSCEEEECCCH--------HHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred CCCeEEEEeCCh--------HHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 345777776431 13567888886 789999764 2 589999888899999999999999887653
No 68
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.89 E-value=6e-22 Score=227.40 Aligned_cols=349 Identities=11% Similarity=0.043 Sum_probs=227.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc----cccCCCCCChHHHHHHHHHHhhcCC-CCCCeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG----HVMFPENVYEPALECAELLLQGVGK-GWASRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~----~~~~~~~~~~~~~eLae~L~~~~p~-~~~~~v~f~~SGSeAv 474 (863)
.++|+.+|..... ++ .++++.+|+.+++++.. .+....+..+....+++.+.+..+. . .+.++++++|++|+
T Consensus 77 ~~i~l~~g~p~~~-~~-p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~-~~~v~~t~G~~~al 153 (448)
T 3aow_A 77 DIISLAGGLPNPK-TF-PKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQ-DNDIMITSGSQQAL 153 (448)
T ss_dssp SSEECCCCCCCGG-GS-CHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCT-TSEEEEESSHHHHH
T ss_pred CcEeCCCCCCCch-hC-CHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCC-hhhEEEeCcHHHHH
Confidence 6889988876543 35 68999999999987632 1111111223333444444333253 2 47899999999999
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccc
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (863)
+.++++... .| .+|++...+|||....+... |.
T Consensus 154 ~~~~~~l~~---------~G------------d~Vlv~~p~y~~~~~~~~~~-g~------------------------- 186 (448)
T 3aow_A 154 DLIGRVFLN---------PG------------DIVVVEAPTYLAALQAFNFY-EP------------------------- 186 (448)
T ss_dssp HHHHHHHCC---------TT------------CEEEEEESCCHHHHHHHHTT-CC-------------------------
T ss_pred HHHHHHHcC---------CC------------CEEEEeCCChHHHHHHHHHc-CC-------------------------
Confidence 999987621 12 57999999999975443221 10
Q ss_pred ccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 002941 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (863)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG 634 (863)
..+.+|... ...| .+.+++.++.. .....++.+|++.|..++..|
T Consensus 187 -----~~~~v~~~~--------------------~g~d--------~~~L~~~l~~~--~~~~~~~k~v~~~~~~~NPtG 231 (448)
T 3aow_A 187 -----QYIQIPLDD--------------------EGMK--------VEILEEKLKEL--KSQGKKVKVVYTVPTFQNPAG 231 (448)
T ss_dssp -----EEEEEEEET--------------------TEEC--------HHHHHHHHHHH--HHTTCCEEEEEECCSSCTTTC
T ss_pred -----EEEEeccCC--------------------CCCC--------HHHHHHHHhhh--hccCCCCeEEEECCCCCCCcC
Confidence 001111000 0011 23455555410 001135777766664478888
Q ss_pred ceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC----cchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHh
Q 002941 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710 (863)
Q Consensus 635 ~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~----~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~ 710 (863)
.+ .+.+++++|.++|++||+++|+||+++++.+.|. ...++..+...++.+|||.++.| +++|++++++++++.
T Consensus 232 ~~-~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~~G-lriG~v~~~~~l~~~ 309 (448)
T 3aow_A 232 VT-MNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILAPG-FRIGWMVGDPGIIRK 309 (448)
T ss_dssp CC-CCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTCGG-GCCEEEEECHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcccc-ccEEEEEeCHHHHHH
Confidence 65 5789999999999999999999999998876665 22333334556777999999988 899999999999998
Q ss_pred hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC-CeeEecc-cceEEE
Q 002941 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR-TVQRVVA-LGTLCA 788 (863)
Q Consensus 711 l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p-~v~~vrg-~Gl~~~ 788 (863)
+... ....+++.++++++++.++|+...-+++.+++++..+..++.+.+.+.+. .| .+..++. .|+++.
T Consensus 310 l~~~------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~g~~~~~p~~g~~~~ 380 (448)
T 3aow_A 310 MEIA------KQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEF---MPEGVKWTKPEGGMFIW 380 (448)
T ss_dssp HHHH------HHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCTTCEECCCSBSSEEE
T ss_pred HHHH------HHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCeEEeCCCccEEEE
Confidence 7641 23456778999999998888742112334444444444455443333221 34 3444443 477888
Q ss_pred EEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 789 IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 789 iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+++.... ...+++..|.++||++.|+ .+.+|+.++. .++++|++++++|.++++++
T Consensus 381 v~~~~~~--------~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L~~~l~~~ 445 (448)
T 3aow_A 381 VTLPDGI--------DSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRLAETIKEE 445 (448)
T ss_dssp EECSTTC--------CHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCC--------CHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHH
Confidence 8885321 1457889999999999873 3689998664 48999999999999988664
No 69
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.89 E-value=2.7e-22 Score=228.48 Aligned_cols=361 Identities=9% Similarity=-0.045 Sum_probs=223.8
Q ss_pred EEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc--------CCCCCC-hHHHHHHHHHHhhcC--
Q 002941 389 VYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM--------FPENVY-EPALECAELLLQGVG-- 457 (863)
Q Consensus 389 v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~--------~~~~~~-~~~~eLae~L~~~~p-- 457 (863)
.||.+++ .+.++..|...+.++ ++.+.+++.++.....+.. ...|.. .-..+|.++|+++++
T Consensus 30 ~y~~~~~----p~~~i~lg~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~ 102 (435)
T 3piu_A 30 PYHEVHN----TNGIIQMGLAENQLC---FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEI 102 (435)
T ss_dssp BCBTTTB----TTSBEECSSCCCCSS---HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCcccC----CCCeEEecccccccc---HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHh
Confidence 3677777 566667777667765 5888888888766443220 001111 112456666666554
Q ss_pred ------CCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCC
Q 002941 458 ------KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (863)
Q Consensus 458 ------~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~ 531 (863)
.. .+.++|++||++|++.+++.+.+ .| ..|++...+|++.........|..
T Consensus 103 ~~~~~~~~-~~~v~~~~gg~~a~~~~~~~l~~---------~g------------d~vl~~~p~~~~~~~~~~~~~g~~- 159 (435)
T 3piu_A 103 RGNKVTFD-PNHLVLTAGATSANETFIFCLAD---------PG------------EAVLIPTPYYPGFDRDLKWRTGVE- 159 (435)
T ss_dssp TTTSSCCC-GGGEEEEEHHHHHHHHHHHHHCC---------TT------------CEEEEEESCCTTHHHHTTTTTCCE-
T ss_pred hCCCCCCC-HHHEEEcCChHHHHHHHHHHhcC---------CC------------CeEEECCCccccHHHHHHHhcCCE-
Confidence 11 36899999999999999987721 12 578888888887644322111100
Q ss_pred CCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcC
Q 002941 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (863)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~ 611 (863)
+..++.... ..|. -| .+.+++.+++.
T Consensus 160 ---------------------------~~~~~~~~~-----------------~~~~--~d--------~~~l~~~l~~~ 185 (435)
T 3piu_A 160 ---------------------------IVPIHCTSS-----------------NGFQ--IT--------ETALEEAYQEA 185 (435)
T ss_dssp ---------------------------EEEEECCGG-----------------GTSC--CC--------HHHHHHHHHHH
T ss_pred ---------------------------EEEeeCCCc-----------------cCCc--CC--------HHHHHHHHHHH
Confidence 011111100 0000 11 13444554320
Q ss_pred CCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch-hhhcCCC---------
Q 002941 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCV--------- 681 (863)
Q Consensus 612 i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a-~e~~gv~--------- 681 (863)
.....++.+|++++. +++.|.+ .+.+.+++|.++|++||++||+||+|+++++.|..+. ...++..
T Consensus 186 --~~~~~~~~~v~i~~p-~nptG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 261 (435)
T 3piu_A 186 --EKRNLRVKGVLVTNP-SNPLGTT-MTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEV 261 (435)
T ss_dssp --HHTTCCEEEEEEESS-CTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CG
T ss_pred --HhcCCCeEEEEEcCC-CCCCCCC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCC
Confidence 012236777777765 8888864 5677899999999999999999999999877776433 2222211
Q ss_pred Cc----EEEeccccC-CCCCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHHhHHH
Q 002941 682 PD----IACYGKLLT-GGVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIP 754 (863)
Q Consensus 682 PD----ivt~sKgLg-gG~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~~l~~ 754 (863)
+| +.+++|++| +| +++|++++ ++++.+.+.. +..++..++++++++.++|+..+- ++..++.++
T Consensus 262 ~~~~i~i~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 332 (435)
T 3piu_A 262 WQRVHVVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK--------MSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHK 332 (435)
T ss_dssp GGGEEEEEESSSSSCCGG-GCEEEEEESCHHHHHHHHH--------HGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeecccCCCc-eeEEEEEeCCHHHHHHHHH--------HhhcCCCCHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 44 558899998 88 89999999 6778777653 334556788888888888763210 112223333
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec-------CCE
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-------GNV 825 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-------g~~ 825 (863)
..+..++.+ .+.+.+.. +..+++.| +++.+++.... . ........++++.|+++ ||++.|. .+.
T Consensus 333 ~~~~~~~~l----~~~L~~~g-~~~~~~~~g~~~~~~l~~~~-~-~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~ 405 (435)
T 3piu_A 333 RLKQRQKKL----VSGLQKSG-ISCLNGNAGLFCWVDMRHLL-R-SNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGW 405 (435)
T ss_dssp HHHHHHHHH----HHHHHTTT-CEECCCCSSSEEEEECGGGS-S-SSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTE
T ss_pred HHHHHHHHH----HHHHHhcC-CcccCCCeeEEEEEEccccc-c-cCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCE
Confidence 333333333 33344443 33445555 88889887532 0 01111356788888877 9999873 378
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 826 IYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 826 lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+|+.++.. ++++|++++++|.++++++.
T Consensus 406 iRi~~~~~-~~e~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 406 FRVCFANL-PERTLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp EEEECSSS-CHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEeeCC-CHHHHHHHHHHHHHHHHHHh
Confidence 99987544 99999999999999987764
No 70
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.89 E-value=3.9e-22 Score=221.67 Aligned_cols=330 Identities=9% Similarity=-0.025 Sum_probs=221.7
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~AL 478 (863)
+++|+.++. ..++ .+|.|.+|+.+++.....+....+..+...++++.+.+..+.. ..++++|+++|++|++.++
T Consensus 24 ~~i~l~~~~--~~~~--~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~ 99 (376)
T 3ezs_A 24 RGLDLGIGE--PQFE--TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFP 99 (376)
T ss_dssp CCCBCSSCC--CCSC--CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHH
T ss_pred CEEEeCCCC--CCCC--CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHH
Confidence 478888765 3455 4799999999888544333222223456667777776655531 1478999999999999999
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
+...+ . ++ ..+|++...+||+....+...+..
T Consensus 100 ~~~~~-----~---~~-----------gd~vl~~~p~~~~~~~~~~~~g~~----------------------------- 131 (376)
T 3ezs_A 100 SFVLF-----D---YQ-----------NPTIAYPNPFYQIYEGAAKFIKAK----------------------------- 131 (376)
T ss_dssp HHHTT-----T---CS-----------SCEEEEEESCCTHHHHHHHHTTCE-----------------------------
T ss_pred HHHcC-----C---CC-----------CCEEEEecCCcHhHHHHHHHcCCE-----------------------------
Confidence 87721 1 00 157999999999875543322110
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
+..++..... .++. .+++.+.. +..+.+++.| ++.+|.+.
T Consensus 132 ~~~~~~~~~~-----------------~~~~-------------~l~~~~~~-------~~~~v~~~~p--~nptG~~~- 171 (376)
T 3ezs_A 132 SLLMPLTKEN-----------------DFTP-------------SLNEKELQ-------EVDLVILNSP--NNPTGRTL- 171 (376)
T ss_dssp EEEEECCGGG-----------------TSCC-------------CCCHHHHH-------HCSEEEECSS--CTTTCCCC-
T ss_pred EEEcccCCCC-----------------Ccch-------------hHHhhhcc-------CCCEEEEcCC--CCCcCCCC-
Confidence 0011111000 0000 11222321 1223444456 78888655
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhh---------hcCCCCcEEEeccccC-CCCCCceeeeccHHHH
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD---------LLGCVPDIACYGKLLT-GGVIPLAATLATNAVF 708 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e---------~~gv~PDivt~sKgLg-gG~~Pigav~~~~~i~ 708 (863)
+.+.+++|.++|++||++||+||+|++|++.|...... .++....+.+++|.+| .| +++|+++++++++
T Consensus 172 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~ 250 (376)
T 3ezs_A 172 SLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPG-LRSGFIAGDSRLL 250 (376)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGG-GCCEEEEECHHHH
T ss_pred CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCcc-ceeEEEeeCHHHH
Confidence 77789999999999999999999999998877544332 3455556778999996 77 8999999999999
Q ss_pred HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEE
Q 002941 709 DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCA 788 (863)
Q Consensus 709 ~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~ 788 (863)
+.+.. ..+..+++.++++++++.++|+. .+..+++++..+..++.+.+. +. . +. ....|.++.
T Consensus 251 ~~~~~------~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~----l~--~-~~-~~~~~~~~~ 313 (376)
T 3ezs_A 251 EKYKA------FRAYLGYTSANAIQKASEAAWLD---DRHAEFFRNIYANNLKLARKI----FK--N-TL-IYPYSFYVY 313 (376)
T ss_dssp HHHHH------HHTTTCCCCCHHHHHHHHHHHHC---SHHHHHHHHHHHHHHHHHHHH----ST--T-CC-CCSBSSEEE
T ss_pred HHHHH------HHhhhcCCCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHH----hc--C-CC-CCCcceEEE
Confidence 98864 23456788999999999999884 334455555555555544333 32 2 22 556788888
Q ss_pred EEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec---------CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 789 IELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 789 iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~---------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
+++. . ...+++.|++ +||++.|. .+.+|+.++ .+++++++++++|.+++++
T Consensus 314 ~~~~--~---------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 314 LPVQ--N---------GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALV--YDTPLLEKPLEIIETYREN 374 (376)
T ss_dssp EECS--C---------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECC--SCHHHHHHHHHHHHHHHCC
T ss_pred EECC--C---------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHHHh
Confidence 8875 2 4568888887 89999873 378999755 4999999999999988754
No 71
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.89 E-value=2e-21 Score=215.14 Aligned_cols=320 Identities=11% Similarity=0.054 Sum_probs=221.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
+++|+.++. +.++ .+|+|.+|+.++++.+.. ++++...+|.++|+++++.. .+.++|++||++|++.+++
T Consensus 33 ~~i~l~~~~--~~~~--~~~~v~~a~~~~~~~~~~-----y~~~~~~~lr~~la~~~~~~-~~~v~~~~g~t~a~~~~~~ 102 (363)
T 3ffh_A 33 KITKLSSNE--NPLG--TSKKVAAIQANSSVETEI-----YPDGWASSLRKEVADFYQLE-EEELIFTAGVDELIELLTR 102 (363)
T ss_dssp CCEECSSCS--CTTC--CCHHHHHHHHTCBSCCCB-----C----CHHHHHHHHHHHTCC-GGGEEEESSHHHHHHHHHH
T ss_pred ceEEccCCC--CCCC--CCHHHHHHHHHHHHHhhc-----CCCcchHHHHHHHHHHhCCC-hhhEEEeCCHHHHHHHHHH
Confidence 788988753 3555 479999999987654322 33445578889999888743 4689999999999999998
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
..++ .| .+|++...+||+....+...+.. +
T Consensus 103 ~~~~---------~g------------d~vl~~~~~~~~~~~~~~~~g~~-----------------------------~ 132 (363)
T 3ffh_A 103 VLLD---------TT------------TNTVMATPTFVQYRQNALIEGAE-----------------------------V 132 (363)
T ss_dssp HHCS---------TT------------CEEEEEESSCHHHHHHHHHHTCE-----------------------------E
T ss_pred HHcc---------CC------------CEEEEcCCChHHHHHHHHHcCCE-----------------------------E
Confidence 7621 12 57999999999865443322110 0
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..++....+ .-| .+.+++.+. +++.+|+++.. ++..|.+. |
T Consensus 133 ~~v~~~~~~---------------------~~d--------~~~l~~~i~--------~~~~~v~~~~p-~nptG~~~-~ 173 (363)
T 3ffh_A 133 REIPLLQDG---------------------EHD--------LEGMLNAID--------EKTTIVWICNP-NNPTGNYI-E 173 (363)
T ss_dssp EEEECCTTS---------------------CCC--------HHHHHHHCC--------TTEEEEEEESS-CTTTCCCC-C
T ss_pred EEecCCCCC---------------------CcC--------HHHHHHhcc--------cCCCEEEEeCC-CCCcCCCc-C
Confidence 111111000 011 244555552 24666777665 88899765 5
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCc----EEEeccccC-CCCCCceeeeccHHHHHhhhcC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD----IACYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD----ivt~sKgLg-gG~~Pigav~~~~~i~~~l~~~ 714 (863)
.+.+.++.+.|++ |+++|+||+|++|++ |...........+| +.+++|.++ .| +++|++++++++++.+...
T Consensus 174 ~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~ 250 (363)
T 3ffh_A 174 LADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLAS-ARVGYGIADKEIIRQLNIV 250 (363)
T ss_dssp HHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSS-CCCEEEEECHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCch-hceeeeecCHHHHHHHHHh
Confidence 5556666666666 999999999999887 76544433333344 457899998 78 8999999999999988752
Q ss_pred CccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccC
Q 002941 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (863)
Q Consensus 715 ~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~ 794 (863)
..+|+.++++++++.++|+ +.++.++.++..+.+++.+.+ .+++++.+..+++.|.++.+++..+
T Consensus 251 --------~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~----~l~~~~g~~~~~~~~~~~~~~~~~~ 315 (363)
T 3ffh_A 251 --------RPPFNTTSIGQKLAIEAIK---DQAFIGECRTSNANGIKQYEA----FAKRFEKVKLYPANGNFVLIDLGIE 315 (363)
T ss_dssp --------CCSCCCBHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHH----HHHHCTTCEECCCCSSEEEEECSSC
T ss_pred --------CCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHH----HHhhCCCceECCCCCeEEEEECCCC
Confidence 2478899999999999997 335556666666666665543 3445445555677888888887532
Q ss_pred CcCCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
...+.+.|.++||++++. ++.+|+.++ +++++++++++|+++
T Consensus 316 ----------~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 316 ----------AGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEEDNSAVIALLEKL 362 (363)
T ss_dssp ----------HHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHHHHHHHHHHHHHh
Confidence 567889999999999984 378999854 999999999999875
No 72
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.89 E-value=3.4e-21 Score=215.29 Aligned_cols=344 Identities=10% Similarity=-0.011 Sum_probs=224.8
Q ss_pred CCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcc-cccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCCh
Q 002941 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNG 470 (863)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SG 470 (863)
+|+ +++|+.+|.. .+| .+|.+.+|+.+++++.. .+....+..+...++++.+.+..+.. ..+.++|+++|
T Consensus 28 ~g~----~~i~l~~~~~--~~~--~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~ 99 (388)
T 1j32_A 28 EGI----DVCSFSAGEP--DFN--TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGG 99 (388)
T ss_dssp TTC----CCEECCCSSC--SSC--CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHH
T ss_pred cCC----CEEECCCCCC--CCC--CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCH
Confidence 566 7899988754 455 47999999999987532 11111122344555666665443311 13689999999
Q ss_pred hhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCC
Q 002941 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (863)
Q Consensus 471 SeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~ 550 (863)
++|++.+++.+++ +| .+|++...+||+....+. ..|..
T Consensus 100 ~~a~~~~~~~~~~---------~g------------d~vl~~~~~~~~~~~~~~-~~g~~-------------------- 137 (388)
T 1j32_A 100 KQSIFNLMLAMIE---------PG------------DEVIIPAPFWVSYPEMVK-LAEGT-------------------- 137 (388)
T ss_dssp HHHHHHHHHHHCC---------TT------------CEEEEESSCCTHHHHHHH-HTTCE--------------------
T ss_pred HHHHHHHHHHhcC---------CC------------CEEEEcCCCChhHHHHHH-HcCCE--------------------
Confidence 9999999987621 12 579999999998654322 11100
Q ss_pred CcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 002941 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (863)
Q Consensus 551 p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViq 630 (863)
+..++.... ..+ ..| .+.+++.+. .++.+|++++. +
T Consensus 138 --------~~~v~~~~~-----------------~~~--~~d--------~~~l~~~l~--------~~~~~v~~~~p-~ 173 (388)
T 1j32_A 138 --------PVILPTTVE-----------------TQF--KVS--------PEQIRQAIT--------PKTKLLVFNTP-S 173 (388)
T ss_dssp --------EEEECCCGG-----------------GTT--CCC--------HHHHHHHCC--------TTEEEEEEESS-C
T ss_pred --------EEEecCCcc-----------------cCC--CCC--------HHHHHHhcC--------cCceEEEEeCC-C
Confidence 011111100 000 011 244555553 24677777775 8
Q ss_pred cCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc----chhh--hcCCCCcEEEeccccC-CCCCCceeeec
Q 002941 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE----TTAD--LLGCVPDIACYGKLLT-GGVIPLAATLA 703 (863)
Q Consensus 631 g~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~----~a~e--~~gv~PDivt~sKgLg-gG~~Pigav~~ 703 (863)
+..|.+. |++.+++|.++|++||+++|+||++++|.+.|.. ..+. .++..+++.+++|.++ .| +++|++++
T Consensus 174 nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G-~r~G~~~~ 251 (388)
T 1j32_A 174 NPTGMVY-TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTG-WRVGFLAG 251 (388)
T ss_dssp TTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTT-TCCEEEEC
T ss_pred CCCCcCC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcc-cceEEEEe
Confidence 8888764 6889999999999999999999999998776642 2222 1445566778999997 77 89999999
Q ss_pred cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc
Q 002941 704 TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL 783 (863)
Q Consensus 704 ~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~ 783 (863)
++++++.+.. ....++++.++++++++.++|+.. .++.+++.+..+..++.+.+ .+++.|.+.-+...
T Consensus 252 ~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~----~L~~~~g~~~~~~~ 319 (388)
T 1j32_A 252 PVPLVKAATK------IQGHSTSNVCTFAQYGAIAAYENS--QDCVQEMLAAFAERRRYMLD----ALNAMPGLECPKPD 319 (388)
T ss_dssp CHHHHHHHHH------HHHTTTCSCCHHHHHHHHHHHHSC--SHHHHHHHHHHHHHHHHHHH----HHHTCTTCBCCCCC
T ss_pred CHHHHHHHHH------HHhhcccCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHH----HHhhCCCCcccCCC
Confidence 9999888764 234567888999999999998743 33445555555555554433 34445443333333
Q ss_pred -ceEEEEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 784 -GTLCAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 784 -Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
|.++.+.+.... ....++.+.|++ +||++.+. .+.+|+.++ ++++++++++++|.++++++
T Consensus 320 ~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 320 GAFYMFPSIAKTG-------RSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp BTTEECCBCGGGT-------CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEecCCCC-------CCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 445555554210 014578888886 79999874 378999864 68999999999999887653
No 73
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.89 E-value=2.6e-21 Score=218.56 Aligned_cols=345 Identities=11% Similarity=0.003 Sum_probs=220.0
Q ss_pred cCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCC-ChHHHHHHHHHHhhc----CCC-CC-CeE
Q 002941 392 DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-YEPALECAELLLQGV----GKG-WA-SRA 464 (863)
Q Consensus 392 ~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~-~~~~~eLae~L~~~~----p~~-~~-~~v 464 (863)
.+|+ +++|+.+|.. .+| .+|.|.+|+.+++++.... .+. .....+|.+.|++++ +.. .. +.+
T Consensus 34 ~~g~----~~idl~~g~~--~~~--~~~~v~~a~~~~~~~~~~~---~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v 102 (412)
T 2x5d_A 34 RRGE----DIIDLSMGNP--DGP--TPPHIVEKLCTVAQREDTH---GYSTSRGIPRLRRAISHWYRDRYDVQIDPESEA 102 (412)
T ss_dssp HTTC----CCEECSSCCC--CSC--CCHHHHHHHHHTC------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSE
T ss_pred hcCC----CEEecCCCCC--CCC--CCHHHHHHHHHHHhCCCCC---CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCE
Confidence 3566 8999988763 455 4799999999988654211 111 122334555555544 521 13 489
Q ss_pred EEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCC
Q 002941 465 YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR 544 (863)
Q Consensus 465 ~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~ 544 (863)
+|+++|++|++.+++...+ .| .+|++...+||+....+...+. .
T Consensus 103 ~~t~g~~~a~~~~~~~~~~---------~g------------d~Vl~~~p~~~~~~~~~~~~g~-~-------------- 146 (412)
T 2x5d_A 103 IVTIGSKEGLAHLMLATLD---------HG------------DTILVPNPSYPIHIYGAVIAGA-Q-------------- 146 (412)
T ss_dssp EEESCHHHHHHHHHHHHCC---------TT------------CEEEEEESCCHHHHHHHHHHTC-E--------------
T ss_pred EEcCChHHHHHHHHHHhCC---------CC------------CEEEEcCCCchhHHHHHHHcCC-E--------------
Confidence 9999999999999987620 11 5799999999997654432210 0
Q ss_pred CcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 002941 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI 624 (863)
Q Consensus 545 ~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvI 624 (863)
+..++... .+ .... ..+.+++.+. ++..+.++
T Consensus 147 --------------~~~~~~~~------------------------~~--~~~~-d~~~l~~~i~-------~~~~~v~l 178 (412)
T 2x5d_A 147 --------------VRSVPLVP------------------------GI--DFFN-ELERAIRESI-------PKPRMMIL 178 (412)
T ss_dssp --------------EEEEECST------------------------TS--CHHH-HHHHHHHTEE-------SCCSEEEE
T ss_pred --------------EEEeecCC------------------------cc--CCCC-CHHHHHHhcc-------cCceEEEE
Confidence 00111110 00 0000 0234444442 22223444
Q ss_pred EccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhh----cCCCCcEEEeccccC-CCCCCc
Q 002941 625 IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADL----LGCVPDIACYGKLLT-GGVIPL 698 (863)
Q Consensus 625 vEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~----~gv~PDivt~sKgLg-gG~~Pi 698 (863)
..| ++..|.+ .+.+++++|.++|++||+++|+||+|++|.+.|. ...... .+....+.+++|.++ +| +++
T Consensus 179 ~~p--~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~ 254 (412)
T 2x5d_A 179 GFP--SNPTAQC-VELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAG-WRI 254 (412)
T ss_dssp ESS--CTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTT-SCC
T ss_pred CCC--CCCCCCc-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcc-cce
Confidence 466 6778865 5789999999999999999999999999877664 222222 233334558899998 78 799
Q ss_pred eeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee
Q 002941 699 AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ 778 (863)
Q Consensus 699 gav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~ 778 (863)
|++++++++++.+.. ..+..+++.++++++++.++|+.. +++.+++.+..+..++.+.+.+.+. ...
T Consensus 255 G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~--g~~--- 321 (412)
T 2x5d_A 255 GFMVGNPELVSALAR------IKSYHDYGTFTPLQVAAIAALEGD--QQCVRDIARQYQQRRDVLVKGLREA--GWM--- 321 (412)
T ss_dssp EEEEECHHHHHHHHH------HHHHHCCCCCHHHHHHHHHHHHSC--SHHHHHHHHHHHHHHHHHHHHHHHH--TCC---
T ss_pred EEEEcCHHHHHHHHH------HHhhhccCCCHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHC--CCE---
Confidence 999999999988764 124457889999999999998854 2445566666666666665554432 222
Q ss_pred Eeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 779 RVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 779 ~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
.+++. |+++.+++...- .......++..|++ +||++.+. .+.+|+.++. +++++++++++|.++
T Consensus 322 ~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~~~l~~~l~~l~~~ 394 (412)
T 2x5d_A 322 VENPKASMYVWAKIPEPY-----AHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE--NRDRLRQAVRGIKAM 394 (412)
T ss_dssp CCCCSBSSEEEEECCTTT-----GGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred ecCCCeeeEEEEEcCCcc-----CCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHH
Confidence 23344 667778875320 00014568888875 69999874 3789998765 899999999999999
Q ss_pred HHHHHH
Q 002941 850 LEEFDK 855 (863)
Q Consensus 850 l~~l~~ 855 (863)
++++..
T Consensus 395 l~~~~~ 400 (412)
T 2x5d_A 395 FRADGL 400 (412)
T ss_dssp HHHTTC
T ss_pred HHhcCC
Confidence 987653
No 74
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.89 E-value=1.1e-21 Score=218.96 Aligned_cols=332 Identities=14% Similarity=0.080 Sum_probs=220.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCC-hHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~-~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~AL 478 (863)
.++|+.+|.. .++ .+|.+.+|+.+++++.. .+.. ....+|.++|+++++.+ .+.++|++||++|++.++
T Consensus 26 ~~i~l~~~~~--~~~--~~~~v~~a~~~~~~~~~-----~y~~~~~~~~l~~~la~~~~~~-~~~v~~~~g~~~a~~~~~ 95 (381)
T 1v2d_A 26 GAVNLGQGFP--SNP--PPPFLLEAVRRALGRQD-----QYAPPAGLPALREALAEEFAVE-PESVVVTSGATEALYVLL 95 (381)
T ss_dssp TCEECCCCSC--SSC--CCHHHHHHHHHHTTTSC-----SCCCTTCCHHHHHHHHHHHTSC-GGGEEEESSHHHHHHHHH
T ss_pred CeEEecCCCC--CCC--CCHHHHHHHHHHHHHhc-----CCCCCCCCHHHHHHHHHhcCCC-hhhEEEcCChHHHHHHHH
Confidence 5788887654 345 47999999999987621 1222 23568889999988743 367999999999999999
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
+.++. .| .+|++...+||+....+ ...|. .
T Consensus 96 ~~~~~---------~g------------d~Vl~~~~~~~~~~~~~-~~~g~----------------------------~ 125 (381)
T 1v2d_A 96 QSLVG---------PG------------DEVVVLEPFFDVYLPDA-FLAGA----------------------------K 125 (381)
T ss_dssp HHHCC---------TT------------CEEEEEESCCTTHHHHH-HHTTC----------------------------E
T ss_pred HHhCC---------CC------------CEEEEcCCCchhHHHHH-HHcCC----------------------------E
Confidence 87721 11 57999999999975432 11110 0
Q ss_pred eeeecCc---chhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 559 KWILSLP---EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 559 ~~~~~~P---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
+..++.+ ..+ ..| .+.+++.+. .++.+|+++.. ++..|.
T Consensus 126 ~~~v~~~~~~~~~---------------------~~d--------~~~l~~~l~--------~~~~~v~~~~~-~nptG~ 167 (381)
T 1v2d_A 126 ARLVRLDLTPEGF---------------------RLD--------LSALEKALT--------PRTRALLLNTP-MNPTGL 167 (381)
T ss_dssp EEEEECEEETTEE---------------------ECC--------HHHHHTTCC--------TTEEEEEEESS-CTTTCC
T ss_pred EEEEeCCCCCccC---------------------CcC--------HHHHHHhcC--------cCCEEEEECCC-CCCCCC
Confidence 1111111 000 011 133333331 35677787776 888887
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhh--hcCCCCcEEEeccccC-CCCCCceeeeccHHHHHhh
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTAD--LLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSF 711 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e--~~gv~PDivt~sKgLg-gG~~Pigav~~~~~i~~~l 711 (863)
+ .|.+++++|.++|++||+++|+||++++|.. |. ..... .++..+++.+++|.++ .| +++|++++++++++.+
T Consensus 168 ~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~ 244 (381)
T 1v2d_A 168 V-FGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEATG-YRVGWIVGPKEFMPRL 244 (381)
T ss_dssp C-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGG-GCCEEEECCTTTHHHH
T ss_pred c-cCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhcCCcc-cceEEEEeCHHHHHHH
Confidence 6 4679999999999999999999999998844 43 11111 3466677788999997 67 8999999999998887
Q ss_pred hcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc-cceEEEEE
Q 002941 712 VGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-LGTLCAIE 790 (863)
Q Consensus 712 ~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-~Gl~~~ie 790 (863)
... .+..+++.++++++++.++|+.....++.+++.+..+..++.+.+.+.+ .+ +.-+.. .|.++.++
T Consensus 245 ~~~------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~~~~~~~~~~ 313 (381)
T 1v2d_A 245 AGM------RQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRA----MG-LRVYVPEGTYFLMAE 313 (381)
T ss_dssp HHH------HHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH----TT-CCEECCSBSSEEEEE
T ss_pred HHH------HhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHH----CC-CEecCCCcceEEEEe
Confidence 641 2345778899999999999986521233455555555556555444433 22 222222 36677777
Q ss_pred EccCCcCCCCchHHHHHHHHHHHHCCcEEEec---------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 002941 791 LQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVE 857 (863)
Q Consensus 791 l~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~~~ 857 (863)
+... . +...|.++||++.+. .+.+|+.++. +++++++++++|.++++++++..
T Consensus 314 ~~~~-----------~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~r~~~ 375 (381)
T 1v2d_A 314 LPGW-----------D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--TEEELHLALERLGRVVNSPREAE 375 (381)
T ss_dssp CTTC-----------C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHHC-------
T ss_pred cChH-----------h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhccccc
Confidence 6421 1 556678999999874 3689998664 99999999999999988776543
No 75
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.89 E-value=4.3e-21 Score=213.52 Aligned_cols=323 Identities=14% Similarity=0.048 Sum_probs=217.1
Q ss_pred EeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh------cCCCCCCeEEEeCChhhHHH
Q 002941 402 FDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG------VGKGWASRAYFSDNGSTAIE 475 (863)
Q Consensus 402 lD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~------~p~~~~~~v~f~~SGSeAvE 475 (863)
+|+.++.. .+| .+|++.+|+.+++++..... ..+......+|.++|+++ .+.. .+.++|+++|++|++
T Consensus 33 idl~~~~~--~~~--~~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~l~~~la~~l~~~~g~~~~-~~~v~~~~G~~~al~ 106 (369)
T 3cq5_A 33 IRLNTNEN--PYP--PSEALVADLVATVDKIATEL-NRYPERDAVELRDELAAYITKQTGVAVT-RDNLWAANGSNEILQ 106 (369)
T ss_dssp EECSSCCC--CSC--CCHHHHHHHHHHHHHHGGGT-TSCCCTTCHHHHHHHHHHHHHHHCCCCC-GGGEEEESHHHHHHH
T ss_pred eeccCCCC--CCC--CCHHHHHHHHHHHHhccccc-ccCCCccHHHHHHHHHHhhhhcccCCCC-hHhEEECCChHHHHH
Confidence 67776553 466 47999999999998742211 122232234666777666 3422 368999999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.+++...+ .| .+|++...+||+....+...+. .
T Consensus 107 ~~~~~l~~---------~g------------d~Vl~~~~~y~~~~~~~~~~g~-~------------------------- 139 (369)
T 3cq5_A 107 QLLQAFGG---------PG------------RTALGFQPSYSMHPILAKGTHT-E------------------------- 139 (369)
T ss_dssp HHHHHHCS---------TT------------CEEEEEESSCTHHHHHHHHTTC-E-------------------------
T ss_pred HHHHHhcC---------CC------------CEEEEcCCChHHHHHHHHHcCC-E-------------------------
Confidence 99987621 12 5799999999987654322210 0
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
+..++....+ ..| .+.+++.+.+ .++.+|++++. ++..|.
T Consensus 140 ---~~~v~~~~~~---------------------~~d--------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~ 179 (369)
T 3cq5_A 140 ---FIAVSRGADF---------------------RID--------MDVALEEIRA-------KQPDIVFVTTP-NNPTGD 179 (369)
T ss_dssp ---EEEEECCTTS---------------------SCC--------HHHHHHHHHH-------HCCSEEEEESS-CTTTCC
T ss_pred ---EEEecCCcCC---------------------CCC--------HHHHHHHhhc-------cCCCEEEEeCC-CCCCCC
Confidence 0111111000 011 2445555642 13567778886 899998
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchh-hhcC-CCCcEEEeccccC-CCCCCceeeeccHHHHHhhh
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLG-CVPDIACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~-e~~g-v~PDivt~sKgLg-gG~~Pigav~~~~~i~~~l~ 712 (863)
+.+ .+++.++|+.+++++|+||+|++|++....+.. +.++ ...++.+++|+++ +| +++|++++++++++.+.
T Consensus 180 ~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~ 254 (369)
T 3cq5_A 180 VTS----LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAG-GRLGYFVANPAFIDAVM 254 (369)
T ss_dssp CCC----HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGG-GCCEEEEECTHHHHHHH
T ss_pred CCC----HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcc-cceEEEEeCHHHHHHHH
Confidence 775 567778888888999999999988654333332 3344 4456678999998 78 89999999999998887
Q ss_pred cCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEc
Q 002941 713 GDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQ 792 (863)
Q Consensus 713 ~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~ 792 (863)
.. ..+|+.++++++++.++|+. .++.++..+..+..++.+.+.+.+ .+ +..+++.|.++.+++.
T Consensus 255 ~~--------~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~~~~~~~~~~~ 318 (369)
T 3cq5_A 255 LV--------RLPYHLSALSQAAAIVALRH---SADTLGTVEKLSVERVRVAARLEE----LG-YAVVPSESNFVFFGDF 318 (369)
T ss_dssp TT--------SCTTCSCHHHHHHHHHHHHT---HHHHHTHHHHHHHHHHHHHHHHHH----HT-CEEECCSSSEEEEECC
T ss_pred Hc--------CCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHh----CC-CEECCCCCeEEEEECC
Confidence 52 23567899999999999874 334555565555666655444433 12 3334667888888775
Q ss_pred cCCcCCCCchHHHHHHHHHHHHCCcEEEec--CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 793 AAGCNAGYGSLYAASLLKKLREDGVYMRPL--GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 793 ~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.. ...+.+.|.++||++.+. .+.+|+.++ +++++++++++|+++++
T Consensus 319 -~~---------~~~l~~~l~~~gi~v~~~~~~~~iRis~~---~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 319 -SD---------QHAAWQAFLDRGVLIRDVGIAGHLRTTIG---VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp -SS---------HHHHHHHHHHTTEECBCCSCTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred -CC---------HHHHHHHHHHCCEEEEECCCCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 11 456888899999999986 478999865 78999999999988753
No 76
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.89 E-value=2.4e-21 Score=216.61 Aligned_cols=343 Identities=15% Similarity=0.032 Sum_probs=222.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccc-cCCCCCChHHHHHHHHHHhhcCCC-CCCe-EEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-MFPENVYEPALECAELLLQGVGKG-WASR-AYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~-~~~~~~~~~~~eLae~L~~~~p~~-~~~~-v~f~~SGSeAvE~ 476 (863)
.++|+.++.. .+| .+|++.+|+.+++++.... .......+...++++.+.+..+.. ..++ ++++++|++|++.
T Consensus 27 ~~i~l~~~~~--~~~--~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~ 102 (389)
T 1gd9_A 27 DVISLGIGEP--DFD--TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 102 (389)
T ss_dssp SCEECCCCSC--SSC--CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred CeEecCCCCC--CCC--CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHH
Confidence 5788877653 455 4799999999999763211 111122344455555555433521 1367 9999999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++.+.+ .| .+|++...+||+....+... |..
T Consensus 103 ~~~~~~~---------~g------------d~vl~~~~~~~~~~~~~~~~-g~~-------------------------- 134 (389)
T 1gd9_A 103 GLSAFLK---------DG------------EEVLIPTPAFVSYAPAVILA-GGK-------------------------- 134 (389)
T ss_dssp HHTTTCC---------TT------------CEEEEEESCCTTHHHHHHHH-TCE--------------------------
T ss_pred HHHHhCC---------CC------------CEEEEcCCCchhHHHHHHHC-CCE--------------------------
Confidence 9987620 11 57999999999975433221 100
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
+..++.... ..+ .-| .+.+++.+. .++.+|+++.. ++..|.+
T Consensus 135 --~~~v~~~~~-----------------~~~--~~d--------~~~l~~~l~--------~~~~~v~~~~~-~nptG~~ 176 (389)
T 1gd9_A 135 --PVEVPTYEE-----------------DEF--RLN--------VDELKKYVT--------DKTRALIINSP-CNPTGAV 176 (389)
T ss_dssp --EEEEECCGG-----------------GTT--CCC--------HHHHHHHCC--------TTEEEEEEESS-CTTTCCC
T ss_pred --EEEeccCCc-----------------cCC--CCC--------HHHHHHhcC--------cCceEEEEECC-CCCCCcC
Confidence 011111100 000 001 244555553 24667777765 8888865
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhc-CC-CCcE--EEeccccC-CCCCCceeeeccHHHHHh
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLL-GC-VPDI--ACYGKLLT-GGVIPLAATLATNAVFDS 710 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~-gv-~PDi--vt~sKgLg-gG~~Pigav~~~~~i~~~ 710 (863)
.+.+.+++|.++|++||+++|+||+++++.+.|. ......+ +. ..|+ .+++|+++ .| +++|++++++++++.
T Consensus 177 -~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~ 254 (389)
T 1gd9_A 177 -LTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTG-WRLGFVAAPSWIIER 254 (389)
T ss_dssp -CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGG-GCCEEEECCHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcc-cceEEEEECHHHHHH
Confidence 5788999999999999999999999999877765 3333333 22 3454 47899997 77 899999999999988
Q ss_pred hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEE
Q 002941 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIE 790 (863)
Q Consensus 711 l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~ie 790 (863)
+.. ..+..+++.++++++++.++|+..++.++.+++.+..+..++.+.+.+.+. ....+. ...|.++.++
T Consensus 255 l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~--~~~~~~~~~~ 324 (389)
T 1gd9_A 255 MVK------FQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM--GLPTVK--PKGAFYIFPR 324 (389)
T ss_dssp HHH------HHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCCCC--CCBTTEECCB
T ss_pred HHH------HHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc--CCeecC--CCeeeEEEEe
Confidence 764 134567888999999999988754332245566666666666555444332 222211 2235666666
Q ss_pred EccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 791 LQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 791 l~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+.... ....++.+.|+ ++||++.+. .+.+|+.++ .+++++++++++|.+++++.
T Consensus 325 ~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~~~~~ 386 (389)
T 1gd9_A 325 IRDTG-------LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA--TAYEKLEEAMDRMERVLKER 386 (389)
T ss_dssp CGGGT-------CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHHHT
T ss_pred ccCCC-------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHhc
Confidence 65311 01457888888 899999874 368999865 38999999999999888654
No 77
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.89 E-value=3.4e-21 Score=213.40 Aligned_cols=321 Identities=13% Similarity=0.032 Sum_probs=217.9
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.++|+.++.. .++ .+|+|.+|+.+++++.+... ..+.++...+|.++|+++++.. .+.++|+++|++|++.+++
T Consensus 27 ~~i~l~~~~~--~~~--~~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~lr~~la~~~g~~-~~~i~~t~g~~~al~~~~~ 100 (360)
T 3hdo_A 27 SWIKLNTNEN--PYP--PSPEVVKAILEELGPDGAAL-RIYPSASSQKLREVAGELYGFD-PSWIIMANGSDEVLNNLIR 100 (360)
T ss_dssp TSEECSSCCC--SSC--CCHHHHHHHHHHHTTTCGGG-GSCCCSSCHHHHHHHHHHHTCC-GGGEEEESSHHHHHHHHHH
T ss_pred ceeeccCCCC--CCC--CCHHHHHHHHHHHhcccchh-hcCCCCchHHHHHHHHHHhCcC-cceEEEcCCHHHHHHHHHH
Confidence 7899887543 454 58999999999998742111 1223333468888888888743 4689999999999999998
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
...+ .| .+|++...+||+....+...+.. +
T Consensus 101 ~l~~---------~g------------d~Vl~~~p~~~~~~~~~~~~g~~-----------------------------~ 130 (360)
T 3hdo_A 101 AFAA---------EG------------EEIGYVHPSYSYYGTLAEVQGAR-----------------------------V 130 (360)
T ss_dssp HHCC---------TT------------CEEEEESSSCTHHHHHHHHHTCE-----------------------------E
T ss_pred HHhC---------CC------------CEEEEcCCChHHHHHHHHHCCCE-----------------------------E
Confidence 6621 12 57999999999875443322110 0
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..++....+ + + +++...... + +.++..| ++..|.+.+
T Consensus 131 ~~v~~~~~~-----------------------~-----------~----~~l~~~~~~-~-~v~i~~p--~nptG~~~~- 167 (360)
T 3hdo_A 131 RTFGLTGDF-----------------------R-----------I----AGFPERYEG-K-VFFLTTP--NAPLGPSFP- 167 (360)
T ss_dssp EEECBCTTS-----------------------S-----------B----TTCCSSBCS-S-EEEEESS--CTTTCCCCC-
T ss_pred EEeeCCCCC-----------------------C-----------H----HHHHhhcCC-C-EEEEeCC--CCCCCCCcC-
Confidence 011111000 0 0 111111122 2 4455555 788998887
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccC-CCCCCceeeeccHHHHHhhhcCCccc
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLK 718 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~~~ 718 (863)
.++++++|+++|+++|+||+|++|+..+.....+.++....+.+++|.++ +| +++|++++++++++.+..
T Consensus 168 ---~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~----- 238 (360)
T 3hdo_A 168 ---LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAG-MRIGLAIARPEVIAALDK----- 238 (360)
T ss_dssp ---HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTT-SCCEEEECCHHHHHHHHH-----
T ss_pred ---HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCc-cceeeEeeCHHHHHHHHH-----
Confidence 67899999999999999999998854433333344444455668899997 67 899999999999998874
Q ss_pred eeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCC
Q 002941 719 ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA 798 (863)
Q Consensus 719 ~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~ 798 (863)
...+++.++++++++.++|+. .++.++..+..+..++.+.+.+ .++ .+..+++.|.++.+.+....
T Consensus 239 ---~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L----~~~-~~~~~~~~~~~~~~~~~~~~--- 304 (360)
T 3hdo_A 239 ---IRDHYNLDRLAQAACVAALRD---QAYLSECCRRIRETREWFTTEL----RSI-GYDVIPSQGNYLFATPPDRD--- 304 (360)
T ss_dssp ---HSCSCCSCHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHH----HHT-TCEECCCSSSEEEEECTTCC---
T ss_pred ---hCCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHH----HHC-CCEEcCCCccEEEEECCCCC---
Confidence 224578999999999999983 4455566666666666554443 333 33445678888888765322
Q ss_pred CCchHHHHHHHHHHHHCCcEEEecC-----CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 799 GYGSLYAASLLKKLREDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 799 ~~~~~~~~~l~~~l~e~GV~~~p~g-----~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
...+.+.|.++||++++++ +.+|+.. .+++++|+++++|++.-+
T Consensus 305 ------~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~---~~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 305 ------GKRVYDGLYARKVLVRHFSDPLLAHGMRISI---GTREEMEQTLAALKEIGE 353 (360)
T ss_dssp ------HHHHHHHHHHTTEECBCCCSTTTTTSEEEEC---CCHHHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHCCEEEEECCCCCCCCEEEEEc---CCHHHHHHHHHHHHHHhc
Confidence 5678889999999998753 7899974 389999999998887653
No 78
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.1e-21 Score=224.67 Aligned_cols=355 Identities=10% Similarity=-0.011 Sum_probs=228.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc--cccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG--HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~--~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~ 476 (863)
.++|+..|.. .++ .+|.|.+|+.+++++.. ++....+..+...++++.+.+..+.+ ..+.++++++|++|++.
T Consensus 58 ~~i~l~~g~~--~~~--~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~ 133 (447)
T 3b46_A 58 ELINLGQGFF--SYS--PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILS 133 (447)
T ss_dssp CCEECCCCSC--SSC--CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHH
T ss_pred CeEEccCCCC--CCC--CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence 7899988764 344 47999999999987622 11111123345566666666555422 12579999999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++.++. .| .+||+...+||+....+...+. .
T Consensus 134 ~~~~l~~---------~g------------d~Vlv~~p~y~~~~~~~~~~g~-~-------------------------- 165 (447)
T 3b46_A 134 CLMGLLN---------AG------------DEVIVFEPFFDQYIPNIELCGG-K-------------------------- 165 (447)
T ss_dssp HHHHHCC---------TT------------CEEEEEESCCTTHHHHHHHTTC-E--------------------------
T ss_pred HHHHHcC---------CC------------CEEEEeCCCchhHHHHHHHcCC-E--------------------------
Confidence 9987621 12 5799999999986543322211 0
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
+..++......... + ... ...+ ..| .+.+++.+. .++.+|+++.. ++..|.+
T Consensus 166 --~~~v~~~~~~~~~~---~-~~~---~~~~--~~d--------~~~l~~~l~--------~~~~~v~l~~p-~nptG~~ 217 (447)
T 3b46_A 166 --VVYVPINPPKELDQ---R-NTR---GEEW--TID--------FEQFEKAIT--------SKTKAVIINTP-HNPIGKV 217 (447)
T ss_dssp --EEEEEEECCGGGGT---S-CBC---STTS--EEC--------HHHHHTTCC--------TTEEEEEEESS-CTTTCCC
T ss_pred --EEEEeCCCcccccc---c-ccc---ccCc--ccC--------HHHHHHhhc--------cCCeEEEEeCC-CCCCCcc
Confidence 00011000000000 0 000 0000 011 133433331 35677777775 8888976
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc---chh--hhcCCCCcEEEeccccC-CCCCCceeeec-cHHHHH
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE---TTA--DLLGCVPDIACYGKLLT-GGVIPLAATLA-TNAVFD 709 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~---~a~--e~~gv~PDivt~sKgLg-gG~~Pigav~~-~~~i~~ 709 (863)
.+++++++|.++|++||+++|+||++++|++.|.. ... ..++..+++.++||.++ .| +++|++++ ++++++
T Consensus 218 -~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G-~riG~~~~~~~~l~~ 295 (447)
T 3b46_A 218 -FTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATG-WRIGWVLSLNAELLS 295 (447)
T ss_dssp -CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTT-SCCEEEECSCHHHHH
T ss_pred -cCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcc-hhhEEEEeCCHHHHH
Confidence 46899999999999999999999999998777632 222 23566677779999998 78 89999999 999998
Q ss_pred hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEE
Q 002941 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAI 789 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~i 789 (863)
.+.. ..+..+|+.++++++++.++|+....+++.+++++..+..++.+.+.+.+. ..+. .....|.++.+
T Consensus 296 ~l~~------~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~--~~~~~g~~~~~ 365 (447)
T 3b46_A 296 YAAK------AHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL--GLPY--TAPEGTYFVLV 365 (447)
T ss_dssp HHHH------HHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH--TCCE--ECCSBSSEEEE
T ss_pred HHHH------HHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC--CCee--cCCCeeEEEEE
Confidence 8764 124567888999999999999876445556666776777777665554432 2221 12445788888
Q ss_pred EEccCCcCCCCc-------hHHHHHHHHHHH-HCCcEEEec------------CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYG-------SLYAASLLKKLR-EDGVYMRPL------------GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 790 el~~~~~~~~~~-------~~~~~~l~~~l~-e~GV~~~p~------------g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
++.....+.... .....+++..|. ++||++.|. .+.+|+.++ .++++|++++++|.+
T Consensus 366 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~--~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 366 DFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVC--KDDAYLENAVERLKL 442 (447)
T ss_dssp ECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECC--SCHHHHHHHHHHGGG
T ss_pred ecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEe--CCHHHHHHHHHHHHH
Confidence 886421000000 013457888776 589999864 478999865 489999999998865
No 79
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.89 E-value=2.3e-21 Score=218.96 Aligned_cols=343 Identities=14% Similarity=0.053 Sum_probs=218.1
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc-ccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~A 477 (863)
+++|+.++.. .++ .+|.+.+|+ +++++... ........+...++++.+....+.+ ..+.+++++||++|++.+
T Consensus 44 ~~i~l~~~~~--~~~--~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~ 118 (409)
T 2gb3_A 44 RIHHLNIGQP--DLK--TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFS 118 (409)
T ss_dssp EEEECSSCCC--CSC--CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHH
T ss_pred CEEeccCCCC--CCC--CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHH
Confidence 8899887654 455 368999999 88865321 1111112344455555555433211 136899999999999999
Q ss_pred HHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 478 LklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
++.+.+ .| .+|++...+||+....+... |..
T Consensus 119 ~~~~~~---------~g------------d~Vl~~~~~~~~~~~~~~~~-g~~--------------------------- 149 (409)
T 2gb3_A 119 FAVIAN---------PG------------DEILVLEPFYANYNAFAKIA-GVK--------------------------- 149 (409)
T ss_dssp HHHHCC---------TT------------CEEEEEESCCTHHHHHHHHH-TCE---------------------------
T ss_pred HHHhCC---------CC------------CEEEEcCCCchhHHHHHHHc-CCE---------------------------
Confidence 987620 12 57999999999875533221 100
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
+..++.... ..+.. .+.+++.+. .++.+|+++.. ++..|.+
T Consensus 150 -~~~v~~~~~-----------------~~~~~-----------~~~l~~~l~--------~~~~~v~~~~p-~nptG~~- 190 (409)
T 2gb3_A 150 -LIPVTRRME-----------------EGFAI-----------PQNLESFIN--------ERTKGIVLSNP-CNPTGVV- 190 (409)
T ss_dssp -EEEEECCGG-----------------GTSCC-----------CTTGGGGCC--------TTEEEEEEESS-CTTTCCC-
T ss_pred -EEEeccCCC-----------------CCCcc-----------HHHHHHhhC--------cCCeEEEECCC-CCCCCCC-
Confidence 001111100 00000 011222221 25677777775 8888875
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-CCcEE--EeccccC-CCCCCceeeeccH-HHHHhhh
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIA--CYGKLLT-GGVIPLAATLATN-AVFDSFV 712 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDiv--t~sKgLg-gG~~Pigav~~~~-~i~~~l~ 712 (863)
+|++++++|.++|++||++||+||+++++++.|..... ..++ ..|++ +++|.++ +| +++|++++++ ++++.+.
T Consensus 191 ~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~l~~~l~ 268 (409)
T 2gb3_A 191 YGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFSACG-ARVGCLITRNEELISHAM 268 (409)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTTCGG-GCCEEEECSCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEEEecchhccCCcc-ceEEEEEECcHHHHHHHH
Confidence 46799999999999999999999999998777754433 2233 34765 6799998 77 7999999998 9988876
Q ss_pred cCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEc
Q 002941 713 GDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQ 792 (863)
Q Consensus 713 ~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~ 792 (863)
.. ...++ +.++++++++.++|+.. .++.+++.+..+..++.+.+.+.+. ....+. ....|.++.+.+.
T Consensus 269 ~~------~~~~~-~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~-~~~~~~~~~~~~~ 336 (409)
T 2gb3_A 269 KL------AQGRL-APPLLEQIGSVGLLNLD--DSFFDFVRETYRERVETVLKKLEEH--GLKRFT-KPSGAFYITAELP 336 (409)
T ss_dssp HH------HHHSC-CCCHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHHHHHHHHHHT--TCCCBC-CCSBSSEEEEECS
T ss_pred HH------HhccC-CCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHHc--Cceeee-CCCeeEEEEEEeC
Confidence 41 23344 78999999999988642 3445555665666666554444332 222201 1234667777775
Q ss_pred cCCcCCCCchHHHHHHHHHHHHC------CcEEEec----------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 002941 793 AAGCNAGYGSLYAASLLKKLRED------GVYMRPL----------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 856 (863)
Q Consensus 793 ~~~~~~~~~~~~~~~l~~~l~e~------GV~~~p~----------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~~ 856 (863)
.. ...++.+.|+++ ||++.+. .+.+|+.++ ++++++++++++|.++++++.
T Consensus 337 ~~---------~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~-- 403 (409)
T 2gb3_A 337 VE---------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKMFC-- 403 (409)
T ss_dssp SS---------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHHHH--
T ss_pred CC---------CHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHhh--
Confidence 21 146788889887 9999874 368999866 899999999999999987653
Q ss_pred HHhhhcC
Q 002941 857 EEKLKSC 863 (863)
Q Consensus 857 ~~~~~~~ 863 (863)
....+|
T Consensus 404 -~~~~~~ 409 (409)
T 2gb3_A 404 -SSRISC 409 (409)
T ss_dssp -C-----
T ss_pred -hcccCC
Confidence 567777
No 80
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.88 E-value=1.4e-21 Score=218.76 Aligned_cols=347 Identities=8% Similarity=-0.032 Sum_probs=227.7
Q ss_pred eEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC--CCC-e
Q 002941 387 FSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG--WAS-R 463 (863)
Q Consensus 387 ~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~--~~~-~ 463 (863)
..++|.+|+ ++||+.+|. ..++ .+|.|.+|+.++++....+....+..+...++++.|.+..+.. ..+ .
T Consensus 22 ~~~~~~~g~----~~i~l~~~~--~~~~--~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~ 93 (396)
T 3jtx_A 22 QGISAPEGM----EAVPLHIGE--PKHP--TPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNE 93 (396)
T ss_dssp TTCCCCTTC----CCEECSCCS--CCSC--CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTS
T ss_pred HhhhhccCC----CeEEeCCcC--CCCC--CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCe
Confidence 445677888 899999876 3344 4799999999998755443322234566777888887655421 135 8
Q ss_pred EEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccC
Q 002941 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSG 543 (863)
Q Consensus 464 v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~ 543 (863)
++|+++|++|++.+++.+.+ .| +. ..+.+|++...+||+....+...+..
T Consensus 94 i~~t~g~~~al~~~~~~~~~-----~g---~~--------~~~d~vl~~~p~~~~~~~~~~~~g~~-------------- 143 (396)
T 3jtx_A 94 ILPVLGSREALFSFVQTVLN-----PV---SD--------GIKPAIVSPNPFYQIYEGATLLGGGE-------------- 143 (396)
T ss_dssp EEEESSHHHHHHHHHHHHCC-----C--------------CCCCEEEEEESCCHHHHHHHHHTTCE--------------
T ss_pred EEEcCCcHHHHHHHHHHHhC-----CC---Cc--------cCCCEEEEcCCCcHhHHHHHHHcCCE--------------
Confidence 99999999999999987721 11 00 00157999999999876543332110
Q ss_pred CCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 002941 544 RGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL 623 (863)
Q Consensus 544 ~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAv 623 (863)
+..++.+.. .+ .-| .+.+++.+.. ++.+|
T Consensus 144 ---------------~~~v~~~~~------------------g~--~~d--------~~~l~~~~~~--------~~~~v 172 (396)
T 3jtx_A 144 ---------------IHFANCPAP------------------SF--NPD--------WRSISEEVWK--------RTKLV 172 (396)
T ss_dssp ---------------EEEEECCTT------------------TC--CCC--------GGGSCHHHHH--------TEEEE
T ss_pred ---------------EEEeecCCC------------------CC--ccC--------HHHHHHhhcc--------CcEEE
Confidence 011111100 00 001 1223344431 34555
Q ss_pred EEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC-Ccchhhh--------cCCCCcEEEeccccC-C
Q 002941 624 IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-VETTADL--------LGCVPDIACYGKLLT-G 693 (863)
Q Consensus 624 IvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG-~~~a~e~--------~gv~PDivt~sKgLg-g 693 (863)
+++.. ++..|.+. +.+.+++|.++|++||+++|+||+|++|.+.| ....... ++..+++.++||+++ .
T Consensus 173 ~l~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 250 (396)
T 3jtx_A 173 FVCSP-NNPSGSVL-DLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVP 250 (396)
T ss_dssp EEESS-CTTTCCCC-CHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCG
T ss_pred EEECC-CCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCc
Confidence 55443 78888755 66679999999999999999999999998887 4433321 455566778999865 5
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +++|++++++++++.+.. ..+..+++.++++++++.++|+. +++.++.++..+..++.+. +.+.+
T Consensus 251 G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~----~~l~~ 316 (396)
T 3jtx_A 251 G-LRSGFVAGDAELLKNFLL------YRTYHGSAMSIPVQRASIAAWDD---EQHVIDNRRLYQEKFERVI----PILQQ 316 (396)
T ss_dssp G-GCCEEEEECHHHHHHHHH------HHHHHTCCCCHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHH----HHHTT
T ss_pred c-cceEEEEeCHHHHHHHHH------HHhhcccCCCHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHH----HHHHh
Confidence 6 899999999999998864 23456788999999999999873 3444555555555555443 33444
Q ss_pred CCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------------CCEEEEecCCCCcHHHH
Q 002941 774 HRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------------GNVIYLMCGPCSSPEVC 839 (863)
Q Consensus 774 ~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------------g~~lr~~ppl~~t~eei 839 (863)
...+.. ...|+++.+++.... ...++..|+ ++||++.|. .+.+|+.+. .+++++
T Consensus 317 ~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~--~~~~~i 384 (396)
T 3jtx_A 317 VFDVKL-PDASFYIWLKVPDGD---------DLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALV--ADVATC 384 (396)
T ss_dssp TSCCCC-CSSSSEEEEECTTSC---------HHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECC--SCHHHH
T ss_pred cCCccC-CCeeEEEEEECCCCC---------HHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEc--CCHHHH
Confidence 322222 234778888886422 456777785 569999873 268999754 399999
Q ss_pred HHHHHHHHHHH
Q 002941 840 SQLLLKLYQRL 850 (863)
Q Consensus 840 d~~v~~L~~~l 850 (863)
++++++|.+++
T Consensus 385 ~~~l~~l~~~l 395 (396)
T 3jtx_A 385 VKAAEDIVSLY 395 (396)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 81
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.88 E-value=1.6e-21 Score=216.81 Aligned_cols=324 Identities=14% Similarity=0.023 Sum_probs=212.0
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc-ccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~A 477 (863)
+++|+.++.. .+|+ +|.+.+|+.+++++... ........+...++++.+....+.+ ..+.++++++|++|++.+
T Consensus 30 ~~i~l~~~~~--~~~~--~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~ 105 (370)
T 2z61_A 30 KVIHLEIGEP--DFNT--PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFA 105 (370)
T ss_dssp CCEECCCCSC--SSCC--CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHH
T ss_pred CEEEccCCCC--CCCC--CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHH
Confidence 7888887654 5665 69999999999876321 1111122334445555554432211 136899999999999999
Q ss_pred HHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 478 LklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
++.+.+ .| .+|++...+||+....+...+.
T Consensus 106 ~~~~~~---------~g------------d~vl~~~p~~~~~~~~~~~~g~----------------------------- 135 (370)
T 2z61_A 106 LSSIID---------DG------------DEVLIQNPCYPCYKNFIRFLGA----------------------------- 135 (370)
T ss_dssp HHHHCC---------TT------------CEEEEESSCCTHHHHHHHHTTC-----------------------------
T ss_pred HHHhcC---------CC------------CEEEEeCCCchhHHHHHHHcCC-----------------------------
Confidence 997621 12 5799999999997554322110
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
..+.+| .| .+.+++.+. +++.+|+++.. ++..|.+.
T Consensus 136 --~~~~v~-------------------------~d--------~~~l~~~l~--------~~~~~v~~~~p-~nptG~~~ 171 (370)
T 2z61_A 136 --KPVFCD-------------------------FT--------VESLEEALS--------DKTKAIIINSP-SNPLGEVI 171 (370)
T ss_dssp --EEEEEC-------------------------SS--------HHHHHHHCC--------SSEEEEEEESS-CTTTCCCC
T ss_pred --EEEEeC-------------------------CC--------HHHHHHhcc--------cCceEEEEcCC-CCCcCccc
Confidence 001111 01 134555553 24666777665 88889877
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc-CCC-CcE--EEeccccC-CCCCCceeeeccHHHHHhhh
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL-GCV-PDI--ACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~-gv~-PDi--vt~sKgLg-gG~~Pigav~~~~~i~~~l~ 712 (863)
+.+ |.++|++||+++|+||+|+++.+.|.......+ +.. .|+ .+++|.++ .| +++|++++++++++.+.
T Consensus 172 ~~~-----l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~ 245 (370)
T 2z61_A 172 DRE-----IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTG-WRIGYVISNDEIIEAIL 245 (370)
T ss_dssp CHH-----HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHH
T ss_pred CHH-----HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCcc-ceEEEEEECHHHHHHHH
Confidence 633 999999999999999999988776654333333 122 243 47899997 77 79999999999998876
Q ss_pred cCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc-cceEEEEEE
Q 002941 713 GDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-LGTLCAIEL 791 (863)
Q Consensus 713 ~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-~Gl~~~iel 791 (863)
. ..+..+++.++++++++.++|+.+. +++.+++.+..+..++.+.+.+.+. .... +.. .|.++.+++
T Consensus 246 ~------~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~---~~~~~~~~~~~~~ 313 (370)
T 2z61_A 246 K------LQQNLFISAPTISQYAALKAFEKET-EREINSMIKEFDRRRRLVLKYVKDF--GWEV---NNPIGAYYVFPNI 313 (370)
T ss_dssp H------HHHHHTSSSCHHHHHHHGGGGSHHH-HHHHHHHHHHHHHHHHHHHHHHHHT--TCBC---CCCCBTTEECCBC
T ss_pred H------HHhhcccCCCHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHHHHHHHHHHc--CCee---cCCCcceEEEEec
Confidence 4 2345677899999999988887521 3334455555555555554443332 2221 222 356666666
Q ss_pred ccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 792 QAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 792 ~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.. . ...+.+.|+ ++||++.+. .+.+|+.++ ++++++++++++|.++++
T Consensus 314 ~~-~---------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 314 GE-D---------GREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp SS-C---------HHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred CC-C---------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 43 1 456888887 789999874 368999876 699999999999988764
No 82
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.88 E-value=2.4e-21 Score=216.87 Aligned_cols=342 Identities=12% Similarity=0.016 Sum_probs=220.4
Q ss_pred cCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccc-cCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCC
Q 002941 392 DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-MFPENVYEPALECAELLLQGVGKG-WASRAYFSDN 469 (863)
Q Consensus 392 ~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~-~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~S 469 (863)
.+|+ +|+|+.+|.. .++. +|+|.+|+.+++++.... .......+...++++.+.+..+.+ ..+.++|+++
T Consensus 28 ~~g~----~~i~l~~g~~--~~~~--~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g 99 (391)
T 3h14_A 28 EAGR----RIIHMEVGQP--GTGA--PRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPG 99 (391)
T ss_dssp HTTC----CCEECCCSSC--SSCS--CHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESS
T ss_pred hcCC----CeEEccCCCC--CCCC--CHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecC
Confidence 3567 8999998764 3443 699999999998753211 111112344455555555433311 1468999999
Q ss_pred hhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccC
Q 002941 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (863)
Q Consensus 470 GSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~ 549 (863)
|++|++.+++...+ .| .+|++...+||+....+...+. .
T Consensus 100 ~~~al~~~~~~l~~---------~g------------d~vl~~~p~~~~~~~~~~~~g~-~------------------- 138 (391)
T 3h14_A 100 SSGGFLLAFTALFD---------SG------------DRVGIGAPGYPSYRQILRALGL-V------------------- 138 (391)
T ss_dssp HHHHHHHHHHHHCC---------TT------------CEEEEEESCCHHHHHHHHHTTC-E-------------------
T ss_pred hHHHHHHHHHHhcC---------CC------------CEEEEcCCCCccHHHHHHHcCC-E-------------------
Confidence 99999999987621 12 5799999999987543322110 0
Q ss_pred CCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc
Q 002941 550 PPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629 (863)
Q Consensus 550 ~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPVi 629 (863)
+..++..... .| .-| .+ .|++ . ++.+|+++..
T Consensus 139 ---------~~~v~~~~~~-----------------~~--~~d--------~~----~l~~----~---~~~~v~i~~p- 170 (391)
T 3h14_A 139 ---------PVDLPTAPEN-----------------RL--QPV--------PA----DFAG----L---DLAGLMVASP- 170 (391)
T ss_dssp ---------EEEEECCGGG-----------------TT--SCC--------HH----HHTT----S---CCSEEEEESS-
T ss_pred ---------EEEeecCccc-----------------CC--CCC--------HH----HHHh----c---CCeEEEECCC-
Confidence 0011111000 00 001 11 2332 1 3445566554
Q ss_pred ccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc-CCCCcEEEeccccC-CCCCCceeeeccHHH
Q 002941 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL-GCVPDIACYGKLLT-GGVIPLAATLATNAV 707 (863)
Q Consensus 630 qg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~-gv~PDivt~sKgLg-gG~~Pigav~~~~~i 707 (863)
++..|.+. |.+.+++|.++|++||+++|+||+|++|++.|.......+ +....+.+++|.++ .| +++|++++++++
T Consensus 171 ~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~ 248 (391)
T 3h14_A 171 ANPTGTML-DHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTG-WRVGWMVVPEDQ 248 (391)
T ss_dssp CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTT-SCCEEEECCGGG
T ss_pred CCCCCccC-CHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCcc-ceeEEEEeCHHH
Confidence 88888755 6777999999999999999999999999887753332222 22222337899998 78 899999999999
Q ss_pred HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc-eE
Q 002941 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG-TL 786 (863)
Q Consensus 708 ~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G-l~ 786 (863)
++.+.. .....+++.++++++++.++|+ ..++.++..+..+.+++.+.+.+ .+++.+..+++.| ++
T Consensus 249 ~~~~~~------~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~~~~~l~~~l----~~~~~~~~~~~~~~~~ 315 (391)
T 3h14_A 249 VRVVER------IAQNMFICAPHASQVAALAALD---CDAELQANLDVYKANRKLMLERL----PKAGFTRIAPPDGAFY 315 (391)
T ss_dssp HHHHHH------HHHHTTCCCCHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHH----HHHTCCCBCCCCBTTE
T ss_pred HHHHHH------HHhhhccCCCHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHH----HHcCCCcccCCCeeEE
Confidence 988764 2355678899999999999887 44556666666666666554443 3334433334444 66
Q ss_pred EEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec--------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 787 CAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 787 ~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~--------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+.+++.... .....+...|+++ ||++.++ .+.+|+.++. +++++++++++|.+++++..
T Consensus 316 ~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~~~ 383 (391)
T 3h14_A 316 VYADVSDLT-------DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--ATADIEEGLDRLEAFMQARG 383 (391)
T ss_dssp EEEECTTTC-------SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CHHHHHHHHHHHHHHHHHC-
T ss_pred EEEecCccC-------CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHHhc
Confidence 777775321 0256788888875 9999873 2589997654 88999999999999887654
No 83
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.88 E-value=3.8e-21 Score=218.86 Aligned_cols=347 Identities=12% Similarity=0.032 Sum_probs=228.1
Q ss_pred EcCCCcccceEEeeecccccc--cCCCCCcHHHHHHHHHHHHhcccccCCCC-CChHHHHHHHHHHhhcC-----CCCCC
Q 002941 391 QDQKNKFIGQQFDACASWWTQ--GPDATLQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVG-----KGWAS 462 (863)
Q Consensus 391 D~dG~~~~~~ylD~~sg~~~~--~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~-~~~~~~eLae~L~~~~p-----~~~~~ 462 (863)
+.+|+ .++|+..|.... .+. .+|.|.+|+.+++++.... .| ......+|.++|+++++ .. .+
T Consensus 50 ~~~~~----~~i~l~~g~~~~~g~~~--~~~~v~~a~~~~~~~~~~~---~y~~~~g~~~lr~~la~~~~~~~~~~~-~~ 119 (427)
T 3dyd_A 50 PNPNK----TMISLSIGDPTVFGNLP--TDPEVTQAMKDALDSGKYN---GYAPSIGFLSSREEIASYYHCPEAPLE-AK 119 (427)
T ss_dssp CCTTS----CCEECCCSCTTTTSSSC--CCHHHHHHHHHHHHHCCSS---SCCCTTCCHHHHHHHHHHHCBTTBCCC-GG
T ss_pred ccCCC----CEEeCCCcCCCccCCCC--CCHHHHHHHHHHHhcCcCC---CCCCCCCcHHHHHHHHHHHhhcCCCCC-hH
Confidence 34556 899999887443 232 5799999999999874221 12 22334567777777665 12 46
Q ss_pred eEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCccc
Q 002941 463 RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYS 542 (863)
Q Consensus 463 ~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~ 542 (863)
+++|+++|++|++.+++.+.+ .| .+|++...+|++....+...+..
T Consensus 120 ~v~~t~g~t~al~~~~~~l~~---------~g------------d~vl~~~p~~~~~~~~~~~~g~~------------- 165 (427)
T 3dyd_A 120 DVILTSGCSQAIDLCLAVLAN---------PG------------QNILVPRPGFSLYKTLAESMGIE------------- 165 (427)
T ss_dssp GEEEESSHHHHHHHHHHHHCC---------TT------------CEEEEEESCCTHHHHHHHHTTCE-------------
T ss_pred HEEEecCcHHHHHHHHHHhcC---------CC------------CEEEEcCCCchhHHHHHHHcCCE-------------
Confidence 899999999999999998721 12 57999999999875443322110
Q ss_pred CCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 002941 543 GRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622 (863)
Q Consensus 543 ~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAA 622 (863)
+..+++.... .+ .-| .+.+++.+. ....+.
T Consensus 166 ----------------~~~~~~~~~~-----------------~~--~~d--------~~~l~~~l~-------~~~~~v 195 (427)
T 3dyd_A 166 ----------------VKLYNLLPEK-----------------SW--EID--------LKQLEYLID-------EKTACL 195 (427)
T ss_dssp ----------------EEEEEEEGGG-----------------TT--EEC--------HHHHHSSCC-------TTEEEE
T ss_pred ----------------EEEEeccccc-----------------CC--CCC--------HHHHHHHhc-------cCCCEE
Confidence 0011110000 00 001 133333331 233344
Q ss_pred EEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcCCCCcEE---EeccccC-CCCCC
Q 002941 623 LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLLT-GGVIP 697 (863)
Q Consensus 623 vIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PDiv---t~sKgLg-gG~~P 697 (863)
+|+.| ++..|. +++++.+++|.++|++||+++|+||+|++|++.|..+ ....++..++++ +++|.++ .| ++
T Consensus 196 ~i~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G-~r 271 (427)
T 3dyd_A 196 IVNNP--SNPCGS-VFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPG-WR 271 (427)
T ss_dssp EEESS--CTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGG-GC
T ss_pred EEECC--CCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcC-cc
Confidence 55555 788996 4578889999999999999999999999999888643 556667677777 8899864 56 89
Q ss_pred ceeeecc-------HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 002941 698 LAATLAT-------NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (863)
Q Consensus 698 igav~~~-------~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~ 770 (863)
+|+++++ +++++.+.. ....+++.++++++++.++|+... .++.++..+..+..++.+. +.
T Consensus 272 iG~~~~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~~~~~a~~~~L~~~~-~~~~~~~~~~~~~~~~~l~----~~ 339 (427)
T 3dyd_A 272 LGWILIHDRRDIFGNEIRDGLVK-------LSQRILGPCTIVQGALKSILCRTP-GEFYHNTLSFLKSNADLCY----GA 339 (427)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH-------HHHHHCCSCHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHH----HH
T ss_pred eEEEEecCcchhhHHHHHHHHHH-------HHhccCCCCHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHH----HH
Confidence 9999987 577777653 123468899999999999998643 3444555555555555443 34
Q ss_pred HhcCCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-----CCEEEEecCCCCcHHHHHHHH
Q 002941 771 ISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 771 ~~~~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v 843 (863)
+++.|.+..+.. .|+++.+.+........ ....+++..|+ ++||++.|. .+.+|+.. .+++++|++++
T Consensus 340 L~~~~g~~~~~p~~g~~~~~~l~~~~~~~~---~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~--~~~~e~i~~~l 414 (427)
T 3dyd_A 340 LAAIPGLRPVRPSGAMYLMVGIEMEHFPEF---ENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVI--TVPEVMMLEAC 414 (427)
T ss_dssp HHHSTTEEEECCSBTTEEEEEECGGGCTTC---SSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEES--CSCHHHHHHHH
T ss_pred HhcCCCceecCCCeeEEEEEecCHhhcCCC---CCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEE--CCCHHHHHHHH
Confidence 445666665544 45677777753210000 12456777775 899999985 37899874 58999999999
Q ss_pred HHHHHHHHH
Q 002941 844 LKLYQRLEE 852 (863)
Q Consensus 844 ~~L~~~l~~ 852 (863)
++|.+++++
T Consensus 415 ~~l~~~l~~ 423 (427)
T 3dyd_A 415 SRIQEFCEQ 423 (427)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887754
No 84
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.88 E-value=1.1e-20 Score=213.14 Aligned_cols=342 Identities=10% Similarity=-0.033 Sum_probs=222.7
Q ss_pred eEEeeecccccc-cCCCCCcHHHHHHHHHHHHhccc-ccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQ-GPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~-~lGh~~~p~V~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~ 476 (863)
+++|+.++..+. .++ .+|++.+|+.+++++... +....+..+...++++.+.+..+.+ ..+.++|+++|++|++.
T Consensus 39 ~~i~l~~~~~~~~~~~--~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~ 116 (406)
T 1xi9_A 39 KVIRLNIGDPVKFDFQ--PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQL 116 (406)
T ss_dssp CCEECCCCCGGGTTCC--CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHH
T ss_pred CEEEecCCCCCcCCCC--CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHH
Confidence 789998876643 566 369999999999876421 1111112344555555555433211 13689999999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++.+.+ .| .+|++...+||+....+... |..
T Consensus 117 ~~~~l~~---------~g------------d~Vl~~~~~~~~~~~~~~~~-g~~-------------------------- 148 (406)
T 1xi9_A 117 IFGALLD---------PG------------DEILVPGPSYPPYTGLVKFY-GGK-------------------------- 148 (406)
T ss_dssp HHHHHCC---------TT------------CEEEEEESCCHHHHHHHHHT-TCE--------------------------
T ss_pred HHHHhCC---------CC------------CEEEEcCCCCccHHHHHHHc-CCE--------------------------
Confidence 9987621 12 57999999999865443221 100
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
+..++.... ..+ .-| .+.+++.+. .++.+|+++.. ++..|.+
T Consensus 149 --~~~v~~~~~-----------------~~~--~~d--------~~~l~~~l~--------~~~~~v~i~~p-~nptG~~ 190 (406)
T 1xi9_A 149 --PVEYRTIEE-----------------EDW--QPD--------IDDIRKKIT--------DRTKAIAVINP-NNPTGAL 190 (406)
T ss_dssp --EEEEEEEGG-----------------GTS--EEC--------HHHHHHHCC--------TTEEEEEEESS-CTTTCCC
T ss_pred --EEEeecCCC-----------------cCC--cCC--------HHHHHHhhC--------cCceEEEEECC-CCCCCCC
Confidence 001111000 000 001 244555553 24677777775 8888965
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCC--cEE--EeccccC-CCCCCceeee--ccH----
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP--DIA--CYGKLLT-GGVIPLAATL--ATN---- 705 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~P--Div--t~sKgLg-gG~~Pigav~--~~~---- 705 (863)
.+++++++|.++|++||+++|+||++++|++.+.......++ .+ |++ +++|.++ .| +++|+++ +++
T Consensus 191 -~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~ 267 (406)
T 1xi9_A 191 -YDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLT-KDVPVIVMNGLSKVYFATG-WRLGYMYFVDPENKLS 267 (406)
T ss_dssp -CCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHC-SSSCEEEEEESTTTTCCGG-GCCEEEEEECTTCTTH
T ss_pred -cCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcC-CCceEEEEeccccccCCCc-cEEEEEEEecCchhHH
Confidence 578899999999999999999999999987644444555554 22 444 5799997 67 8999999 898
Q ss_pred HHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-c
Q 002941 706 AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-G 784 (863)
Q Consensus 706 ~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-G 784 (863)
++++.+... .... ++.++++++++.++|+.. .++.+++.+..+..++.+.+ .+.+.|.+..+.+. |
T Consensus 268 ~l~~~l~~~------~~~~-~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~----~L~~~~~~~~~~~~~~ 334 (406)
T 1xi9_A 268 EVREAIDRL------ARIR-LCPNTPAQFAAIAGLTGP--MDYLKEYMKKLKERRDYIYK----RLNEIPGISTTKPQGA 334 (406)
T ss_dssp HHHHHHHHH------HHHT-CCSCSHHHHHHHHHHHSC--CHHHHHHHHHHHHHHHHHHH----HHHTSTTEECCCCCBS
T ss_pred HHHHHHHHH------HHhh-cCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHH----HHHhCCCCeeecCCee
Confidence 998887641 1112 678899999999999743 22345555555555554433 34455555444444 4
Q ss_pred eEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 785 TLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 785 l~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.++.+.+.... . ....++.+.|+ ++||++.+. .+.+|+.++ ++++++++++++|.++++++
T Consensus 335 ~~~~~~~~~~~---~---~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~~~~~~l~~~l~~~ 403 (406)
T 1xi9_A 335 FYIFPKIEVGP---W---KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEEAMDRFEKFMKER 403 (406)
T ss_dssp SEECCEECSCS---C---SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEecCccC---C---CCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHHH
Confidence 55556665310 0 01456888887 899999874 478999875 89999999999999988764
No 85
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.87 E-value=6.4e-21 Score=215.25 Aligned_cols=343 Identities=12% Similarity=0.011 Sum_probs=219.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhc-ccccCCCCCChHHHHHHHHHHhhcCCC-CCC-eEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~p~~-~~~-~v~f~~SGSeAvE~ 476 (863)
.++|+.+|.. .+| .+|.+.+|+.+++++. .......+..+...++++.+.+..+.+ ..+ .++|+++|++|++.
T Consensus 26 ~~i~l~~~~~--~~~--~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~ 101 (411)
T 2o0r_A 26 GAVNLGQGFP--DED--GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAA 101 (411)
T ss_dssp TCEESSCSSC--SSC--CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHH
T ss_pred CeeeccCcCC--CCC--CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHH
Confidence 4788877643 455 4799999999999862 111111112344455555555443421 135 89999999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++.+.+ .| .+|++...+||+....+. ..|..
T Consensus 102 ~~~~~~~---------~g------------d~Vl~~~~~y~~~~~~~~-~~g~~-------------------------- 133 (411)
T 2o0r_A 102 AVLGLVE---------PG------------SEVLLIEPFYDSYSPVVA-MAGAH-------------------------- 133 (411)
T ss_dssp HHHHHCC---------TT------------CEEEEEESCCTTHHHHHH-HTTCE--------------------------
T ss_pred HHHHhcC---------CC------------CEEEEeCCCcHhHHHHHH-HcCCE--------------------------
Confidence 9987621 12 579999999999654322 11100
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
+..++..... ..+ ..| .+.+++.+. .++.+|+++.. ++..|.+
T Consensus 134 --~~~v~~~~~~----------------~~~--~~d--------~~~l~~~l~--------~~~~~v~l~~~-~nptG~~ 176 (411)
T 2o0r_A 134 --RVTVPLVPDG----------------RGF--ALD--------ADALRRAVT--------PRTRALIINSP-HNPTGAV 176 (411)
T ss_dssp --EEEEECEEET----------------TEE--ECC--------HHHHHHHCC--------TTEEEEEEESS-CTTTCCC
T ss_pred --EEEeeccccc----------------cCC--CCC--------HHHHHHhhc--------cCceEEEEeCC-CCCCCCC
Confidence 0111111000 000 011 244555552 25677777775 8888965
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhh----cCCCCcEEEeccccC-CCCCCceeeeccHHHHHh
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADL----LGCVPDIACYGKLLT-GGVIPLAATLATNAVFDS 710 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~----~gv~PDivt~sKgLg-gG~~Pigav~~~~~i~~~ 710 (863)
+|.+++++|.++|++||++||+||+|++|++.|.. ..... .+....+.+++|.++ .| +++|++++++++++.
T Consensus 177 -~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~ 254 (411)
T 2o0r_A 177 -LSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTG-WKIGWACGPAELIAG 254 (411)
T ss_dssp -CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTT-TCEEEEECCHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCcc-ceEEEEeeCHHHHHH
Confidence 57889999999999999999999999998777642 22222 233344557899998 78 899999999999988
Q ss_pred hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEE
Q 002941 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIE 790 (863)
Q Consensus 711 l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~ie 790 (863)
+... ....+++.++++++++.++|+.. +++.+++++..+..++.+.+.+.+. .... .....|+++.++
T Consensus 255 l~~~------~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~--~~~~~g~~~~~~ 322 (411)
T 2o0r_A 255 VRAA------KQYLSYVGGAPFQPAVALALDTE--DAWVAALRNSLRARRDRLAAGLTEI--GFAV--HDSYGTYFLCAD 322 (411)
T ss_dssp HHHH------HHHHTSCCCTTHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHH--TCEE--CCCCBSSEEEEE
T ss_pred HHHH------HhhccCCCChHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHHHHc--CCEe--cCCCeeEEEEEe
Confidence 7641 23456778889999999999864 4445566666666666665554432 2211 112346788888
Q ss_pred EccCCcCCCCchHHHHHHHHHHH-HCCcEEEec------------------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 791 LQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL------------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 791 l~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~------------------g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+.... . . ...++...|+ ++||++.+. .+.+|+.+. .+++++++++++|.++++
T Consensus 323 ~~~~~-~--~---~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~~~ 394 (411)
T 2o0r_A 323 PRPLG-Y--D---DSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAIRRLSVLAE 394 (411)
T ss_dssp CGGGT-C--C---CHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHHHHHGGGGC
T ss_pred cCCCC-C--C---CHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 86420 0 0 1456777776 679999863 246898854 489999999999988776
Q ss_pred HH
Q 002941 852 EF 853 (863)
Q Consensus 852 ~l 853 (863)
+.
T Consensus 395 ~~ 396 (411)
T 2o0r_A 395 RP 396 (411)
T ss_dssp --
T ss_pred cc
Confidence 54
No 86
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.87 E-value=1.8e-20 Score=209.35 Aligned_cols=335 Identities=15% Similarity=0.064 Sum_probs=219.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc-cccCCCCCChHHHHHHHHHHhhcCCC-CCC-eEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~p~~-~~~-~v~f~~SGSeAvE~ 476 (863)
.++|+.++.. .+| .+|.+.+|+.+++++.. .+.......+...++++.+.+..+.+ ..+ .++|+++|++|++.
T Consensus 31 ~~i~l~~~~~--~~~--~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~ 106 (386)
T 1u08_A 31 QAINLSQGFP--DFD--GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA 106 (386)
T ss_dssp TCEECCCSSC--SSC--CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred CeEEecCCCC--CCC--CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHH
Confidence 5788887654 455 47999999999987621 11111112344455555554444421 135 89999999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++...+ .| .+|++...+||+....+. ..|..
T Consensus 107 ~~~~~~~---------~g------------d~vl~~~p~~~~~~~~~~-~~g~~-------------------------- 138 (386)
T 1u08_A 107 AITALVR---------NG------------DEVICFDPSYDSYAPAIA-LSGGI-------------------------- 138 (386)
T ss_dssp HHHHHCC---------TT------------CEEEEEESCCTTHHHHHH-HTTCE--------------------------
T ss_pred HHHHhCC---------CC------------CEEEEeCCCchhHHHHHH-HcCCE--------------------------
Confidence 9987621 12 579999999998654322 11100
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
+..++.... .+ ..| .+.+++.+. .++.+|+++.. ++..|.+
T Consensus 139 --~~~v~~~~~------------------~~--~~d--------~~~l~~~l~--------~~~~~v~l~~p-~nptG~~ 179 (386)
T 1u08_A 139 --VKRMALQPP------------------HF--RVD--------WQEFAALLS--------ERTRLVILNTP-HNPSATV 179 (386)
T ss_dssp --EEEEECCTT------------------TC--CCC--------HHHHHHHCC--------TTEEEEEEESS-CTTTCCC
T ss_pred --EEEeecCcc------------------cC--cCC--------HHHHHHhhc--------ccCEEEEEeCC-CCCCCcc
Confidence 011111100 00 011 234555542 35677777765 8888865
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCC----cchhh-hcCCCCcEEEeccccC-CCCCCceeeeccHHHHHh
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTAD-LLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDS 710 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~----~~a~e-~~gv~PDivt~sKgLg-gG~~Pigav~~~~~i~~~ 710 (863)
.|.+++++|.++|++||+++|+||++++|.+.|. ..... .++....+.+++|.++ .| +++|++++++++++.
T Consensus 180 -~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~ 257 (386)
T 1u08_A 180 -WQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTG-WKVGYCVAPAPISAE 257 (386)
T ss_dssp -CCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGG-GCCEEEECCHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcc-cceEEEEcCHHHHHH
Confidence 5788999999999999999999999999877664 22222 3455566778999998 78 899999999999988
Q ss_pred hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc-cceEEEE
Q 002941 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-LGTLCAI 789 (863)
Q Consensus 711 l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-~Gl~~~i 789 (863)
+.. ..+..+++.++++++++.++|+.. +++.+++++..+..++.+. +.+.+++ +.-+.. .|.++.+
T Consensus 258 l~~------~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~----~~L~~~g-~~~~~~~~g~~~~~ 324 (386)
T 1u08_A 258 IRK------VHQYLTFSVNTPAQLALADMLRAE--PEHYLALPDFYRQKRDILV----NALNESR-LEILPCEGTYFLLV 324 (386)
T ss_dssp HHH------HHHHHTSSCCHHHHHHHHHHHHHC--THHHHTHHHHHHHHHHHHH----HHTTSSS-CEECCCCBSSEEEE
T ss_pred HHH------HHHhhccCCChHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHH----HHHHHCC-CeecCCCceEEEEE
Confidence 764 124457888999999999999864 3455666666666666553 3344443 222223 3678888
Q ss_pred EEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec---------CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~---------g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
++.... . . ....+.+.|+ ++||++.|. .+.+|+.++ .++++|++++++|.+
T Consensus 325 ~~~~~~-~--~---~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 325 DYSAVS-T--L---DDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp ECTTTC-C--S---CHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred ecCCCC-C--C---CHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 875420 0 0 1456777776 689999863 268999865 589999999998853
No 87
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.87 E-value=6.5e-20 Score=204.99 Aligned_cols=334 Identities=10% Similarity=-0.038 Sum_probs=214.4
Q ss_pred CCCCcHHHHHHHHHHHHhcccccCC-C-----CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHh
Q 002941 414 DATLQIELARDMGYTAARFGHVMFP-E-----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF 487 (863)
Q Consensus 414 Gh~~~p~V~~Ai~~q~~~~~~~~~~-~-----~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~ 487 (863)
|+ .+|++.+|+.+++++....... . ...+...+|.++|+++++....+.++|+++|++|++.+++.+. .++.
T Consensus 33 ~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~-~~~~ 110 (406)
T 1kmj_A 33 AQ-KPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWG-NSNV 110 (406)
T ss_dssp CC-CCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTH-HHHC
T ss_pred CC-CCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhh-hhcC
Confidence 44 6899999999999875311100 0 1245578899999999875113689999999999999999873 2211
Q ss_pred hccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcch
Q 002941 488 DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEW 567 (863)
Q Consensus 488 ~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~ 567 (863)
. . ..+|++...+|||.......+.... + . .+..++.+..
T Consensus 111 ~----~------------gd~vl~~~~~~~~~~~~~~~~~~~~---g---------~-------------~~~~~~~~~~ 149 (406)
T 1kmj_A 111 R----A------------GDNIIISQMEHHANIVPWQMLCARV---G---------A-------------ELRVIPLNPD 149 (406)
T ss_dssp C----T------------TCEEEEETTCCGGGTHHHHHHHHHH---T---------C-------------EEEEECBCTT
T ss_pred C----C------------CCEEEEecccchHHHHHHHHHHHhC---C---------C-------------EEEEEecCCC
Confidence 1 1 1579999999999754321111000 0 0 0011111100
Q ss_pred hhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHH
Q 002941 568 LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647 (863)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lr 647 (863)
+ ..| .+.+++.+. .++++|+++++ ++..|.+.+ +++|.
T Consensus 150 ~---------------------~~d--------~~~l~~~l~--------~~~~~v~~~~~-~nptG~~~~----l~~i~ 187 (406)
T 1kmj_A 150 G---------------------TLQ--------LETLPTLFD--------EKTRLLAITHV-SNVLGTENP----LAEMI 187 (406)
T ss_dssp S---------------------CBC--------GGGHHHHCC--------TTEEEEEEESB-CTTTCCBCC----HHHHH
T ss_pred C---------------------CcC--------HHHHHHHhc--------cCCeEEEEeCC-CccccCcCC----HHHHH
Confidence 0 011 123445542 35788999997 999998876 99999
Q ss_pred HHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCCCCCceeeeccHHHHHhhhcCCccce------
Q 002941 648 KECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKA------ 719 (863)
Q Consensus 648 elc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~------ 719 (863)
++|++||+++|+||+|+ +|... +....+ .+|++ +++|.+|. ..+|++++++++++.+........
T Consensus 188 ~l~~~~~~~li~D~~~~-~g~~~--~~~~~~--~~d~~~~s~~K~~g~--~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (406)
T 1kmj_A 188 TLAHQHGAKVLVDGAQA-VMHHP--VDVQAL--DCDFYVFSGHKLYGP--TGIGILYVKEALLQEMPPWEGGGSMIATVS 260 (406)
T ss_dssp HHHHHTTCEEEEECTTT-TTTSC--CCHHHH--TCSEEEEEGGGTTSC--TTCEEEEECHHHHHHCCCSSCSTTSEEEEE
T ss_pred HHHHHcCCEEEEEchhh-cCCCC--Cccccc--CCCEEEEEchhccCC--CCcEEEEEeHHHHhhcCCcccCCCceeecc
Confidence 99999999999999995 44432 223333 47887 47998842 237999999999988753210000
Q ss_pred ---------eecccCCCccHHHHHHHH-HHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc--cceEE
Q 002941 720 ---------LLHGHSYSAHALGCAAAA-KSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA--LGTLC 787 (863)
Q Consensus 720 ---------~~~~~T~~~~pla~AAal-AaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg--~Gl~~ 787 (863)
....++++.+++++++++ ++++.+++.. .+++.+..+.+++.+ .+.+++.|.+.-+.. .|.++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~-~~~~~~~~~~~~~~l----~~~L~~~~~~~~~~~~~~~~~~ 335 (406)
T 1kmj_A 261 LSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALG-LNNIAEYEQNLMHYA----LSQLESVPDLTLYGPQNRLGVI 335 (406)
T ss_dssp TTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHH----HHHHTTSTTEEEESCTTCCSEE
T ss_pred cccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHH----HHHHhcCCCeEEecCCCcCCEE
Confidence 001123445566666555 7888775432 334444444444443 334455555544444 68888
Q ss_pred EEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 788 AIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 788 ~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.+.+.... ...+.+.|.++||++++. .+.+|+.++..+|++++++++++|+++++.+
T Consensus 336 ~~~~~~~~---------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 336 AFNLGKHH---------AYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp EEEETTCC---------HHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCC---------HHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 88774211 456788899999999864 2789999988889999999999999987654
No 88
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.87 E-value=1.7e-20 Score=211.97 Aligned_cols=359 Identities=11% Similarity=0.047 Sum_probs=224.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc---cccCCCCCChHHHHHHHHHHhhcCCCC-C-CeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG---HVMFPENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~---~~~~~~~~~~~~~eLae~L~~~~p~~~-~-~~v~f~~SGSeAv 474 (863)
.++|+..|. ..++ .+|.|.+|+.+++++.. .+.......+...++++.+.+..+... . +.++|+++|++|+
T Consensus 29 ~~i~l~~g~--~~~~--~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~ 104 (422)
T 3fvs_A 29 DVVNLGQGF--PDFP--PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL 104 (422)
T ss_dssp CCEECCCSS--CSSC--CCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred CceEeCCCC--CCCC--CCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHH
Confidence 567777665 2343 57999999999998632 111111233556667777766544220 1 4799999999999
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccc
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (863)
+.+++.+.+ .| .+|++...+||+....+...+...
T Consensus 105 ~~~~~~~~~---------~g------------d~vl~~~p~~~~~~~~~~~~g~~~------------------------ 139 (422)
T 3fvs_A 105 FTAFQALVD---------EG------------DEVIIIEPFFDCYEPMTMMAGGRP------------------------ 139 (422)
T ss_dssp HHHHHHHCC---------TT------------CEEEEEESCCTTHHHHHHHTTCEE------------------------
T ss_pred HHHHHHHcC---------CC------------CEEEEcCCCchhhHHHHHHcCCEE------------------------
Confidence 999987621 12 579999999999654333221100
Q ss_pred ccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 002941 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (863)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG 634 (863)
..++..... ...+.... ...| .-| .+.+++.+. .++.+|+++.. ++..|
T Consensus 140 -----~~~~~~~~~----~~~G~~~~---~~~~--~~d--------~~~l~~~~~--------~~~~~v~~~~p-~nptG 188 (422)
T 3fvs_A 140 -----VFVSLKPGP----IQNGELGS---SSNW--QLD--------PMELAGKFT--------SRTKALVLNTP-NNPLG 188 (422)
T ss_dssp -----EEEECBCCC----CCSSSCCB---GGGS--BCC--------HHHHHTTCC--------TTEEEEEEESS-CTTTC
T ss_pred -----EEEeccccc----cccccccc---ccCC--CCC--------HHHHHhhcC--------CCceEEEECCC-CCCCC
Confidence 001110000 00000000 0000 011 133333331 35677777775 89999
Q ss_pred ceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhc----CCCCcEEEeccccC-CCCCCceeeeccHHHH
Q 002941 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL----GCVPDIACYGKLLT-GGVIPLAATLATNAVF 708 (863)
Q Consensus 635 ~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~----gv~PDivt~sKgLg-gG~~Pigav~~~~~i~ 708 (863)
.+. +++.+++|.++|++||+++|+||+|++|++.|.. .....+ +...++.++||.++ .| +++|+++++++++
T Consensus 189 ~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~ 266 (422)
T 3fvs_A 189 KVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATG-WKVGWVLGPDHIM 266 (422)
T ss_dssp CCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGG-GCCEEEECCHHHH
T ss_pred cCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCcc-ceEEEEEeCHHHH
Confidence 765 7889999999999999999999999999888752 222222 22344557899998 78 8999999999999
Q ss_pred HhhhcCCccceeecccCCCccHHHHHHHHHHHHH-----hcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc
Q 002941 709 DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKW-----FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL 783 (863)
Q Consensus 709 ~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~-----l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~ 783 (863)
+.+.. ..+..+++.++++++++.++|+. ...+++.+++.+..+..++.+.+ .+.+++........
T Consensus 267 ~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~L~~~g~~~~~~~~ 336 (422)
T 3fvs_A 267 KHLRT------VHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIR----SLQSVGLKPIIPQG 336 (422)
T ss_dssp HHHHH------HHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHH----HHHTTTCEEEBCSB
T ss_pred HHHHH------HHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHH----HHHHcCCeecCCCe
Confidence 88764 23556888999999999999985 12234456666666666665543 34444432234456
Q ss_pred ceEEEEEEccCCcCCC-----CchHHHHHHHHHHH-HCCcEEEec------------CCEEEEecCCCCcHHHHHHHHHH
Q 002941 784 GTLCAIELQAAGCNAG-----YGSLYAASLLKKLR-EDGVYMRPL------------GNVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 784 Gl~~~iel~~~~~~~~-----~~~~~~~~l~~~l~-e~GV~~~p~------------g~~lr~~ppl~~t~eeid~~v~~ 845 (863)
|.++.+++........ .......+++..++ ++||++.|+ .+.+|+. +..++++|++++++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis--~~~~~e~i~~~l~~ 414 (422)
T 3fvs_A 337 SYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFC--FVKDEATLQAMDEK 414 (422)
T ss_dssp SSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEE--CCCCHHHHHHHHHH
T ss_pred eeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEE--ecCCHHHHHHHHHH
Confidence 7788888754210000 00001345667655 579999872 2688886 44599999999999
Q ss_pred HHHHHHH
Q 002941 846 LYQRLEE 852 (863)
Q Consensus 846 L~~~l~~ 852 (863)
|.+++++
T Consensus 415 l~~~l~~ 421 (422)
T 3fvs_A 415 LRKWKVE 421 (422)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988754
No 89
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.87 E-value=3.9e-21 Score=217.00 Aligned_cols=336 Identities=8% Similarity=-0.008 Sum_probs=218.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc--cccCCCCCChHHHHHHHHHHhhcCCC-CC-CeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG--HVMFPENVYEPALECAELLLQGVGKG-WA-SRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~--~~~~~~~~~~~~~eLae~L~~~~p~~-~~-~~v~f~~SGSeAvE 475 (863)
+++|+.+|.. .+| .+|.|.+|+.+++++.. .+.......+....+++.+.+..+.+ .. +.++|+++|++|++
T Consensus 48 ~~idl~~g~~--~~~--~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~ 123 (404)
T 2o1b_A 48 PLINMAVGIP--DGP--TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLV 123 (404)
T ss_dssp CCEECCCCSC--SSC--CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHH
T ss_pred CEEecCCcCC--CCC--CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHH
Confidence 7999988765 466 37999999999885421 11101122233444444444333632 11 58999999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.+++...+ .| .+|++...+||+....+...+. .
T Consensus 124 ~~~~~l~~---------~g------------d~Vl~~~p~y~~~~~~~~~~g~-~------------------------- 156 (404)
T 2o1b_A 124 AVPTCVIN---------PG------------DYVLLPDPGYTDYLAGVLLADG-K------------------------- 156 (404)
T ss_dssp HHHHHHCC---------TT------------CEEEEEESCCSSHHHHHHHTTC-E-------------------------
T ss_pred HHHHHhcC---------CC------------CEEEEcCCCchhHHHHHHHCCC-E-------------------------
Confidence 99987620 11 5799999999997654432211 0
Q ss_pred cCceeeecCcc-hhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 002941 556 YNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (863)
Q Consensus 556 ~~~~~~~~~P~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG 634 (863)
+..++... .+ ..|. +.+++.+. .++.+|+++.. ++..|
T Consensus 157 ---~~~v~~~~~~~---------------------~~d~--------~~l~~~l~--------~~~~~v~l~~p-~nptG 195 (404)
T 2o1b_A 157 ---PVPLNLEPPHY---------------------LPDW--------SKVDSQII--------DKTKLIYLTYP-NNPTG 195 (404)
T ss_dssp ---EEEEECCTTTC---------------------CCCG--------GGSCHHHH--------HHEEEEEECSS-CTTTC
T ss_pred ---EEEeccCcccC---------------------cCCH--------HHHHHhhc--------cCceEEEEcCC-CCCCC
Confidence 00111110 00 0010 12333342 24667777644 78888
Q ss_pred ceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc---chhh-hcCCCCcEEEeccccC-CCCCCceeeeccHHHHH
Q 002941 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE---TTAD-LLGCVPDIACYGKLLT-GGVIPLAATLATNAVFD 709 (863)
Q Consensus 635 ~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~---~a~e-~~gv~PDivt~sKgLg-gG~~Pigav~~~~~i~~ 709 (863)
.+ .|.+++++|.++|++||+++|+||++++|.+.|.. +... ..+....+.+++|+++ .| +++|++++++++++
T Consensus 196 ~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~ 273 (404)
T 2o1b_A 196 ST-ATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSG-FRVGFAVGNKDMIQ 273 (404)
T ss_dssp CC-CCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGG-GCCEEEEECHHHHH
T ss_pred cc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCch-hheEeEecCHHHHH
Confidence 65 57899999999999999999999999998766642 2221 1233344568899997 78 89999999999998
Q ss_pred hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEE
Q 002941 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCA 788 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~ 788 (863)
.+.. .....+++.++++++++.++|+.. +++.+++++..+..++.+.+.+. +++ +..+++. |+++.
T Consensus 274 ~l~~------~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~----~~g-~~~~~~~~g~~~~ 340 (404)
T 2o1b_A 274 ALKK------YQTHTNAGMFGALQDAAIYALNHY--DDFLEEQSNVFKTRRDRFEAMLA----KAD-LPFVHAKGGIYVW 340 (404)
T ss_dssp HHHH------HHHHHCCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHH----HTT-CCEECCCBSSEEE
T ss_pred HHHH------HHhhccCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHH----hcC-CeecCCCcceEEE
Confidence 8764 124457788999999999999864 44556666666666665544433 332 2233443 56777
Q ss_pred EEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 789 IELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 789 iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
+++.... ...++.+.|+ ++||++.+. .+.+|+.++. +++++++++++|.+++++
T Consensus 341 ~~~~~~~--------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 341 LETPPGY--------DSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL--DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp EECCTTC--------CHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS--CTTHHHHHHHHHHGGGGG
T ss_pred EeCCCCC--------CHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 8875321 1456788877 579999873 3789998764 788999999999887654
No 90
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.87 E-value=1.4e-20 Score=209.37 Aligned_cols=299 Identities=15% Similarity=0.059 Sum_probs=207.5
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccc
Q 002941 445 ALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524 (863)
Q Consensus 445 ~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gal 524 (863)
..+|.++|++++..-..+.+++++||++|++.+++...+ .| .+||+...+||+......
T Consensus 65 ~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~---------~g------------d~Vl~~~~~~~~~~~~~~ 123 (375)
T 3op7_A 65 SPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIE---------PG------------DHVISLYPTYQQLYDIPK 123 (375)
T ss_dssp CHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCC---------TT------------CEEEEEESSCTHHHHHHH
T ss_pred hHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcC---------CC------------CEEEEeCCCchhHHHHHH
Confidence 467889999876321146899999999999999987621 12 579999999998643322
Q ss_pred eecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHH
Q 002941 525 EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYI 604 (863)
Q Consensus 525 s~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l 604 (863)
..+. . +..++.+... .|. -| .+.+
T Consensus 124 ~~g~-~----------------------------~~~v~~~~~~-----------------~~~--~d--------~~~l 147 (375)
T 3op7_A 124 SLGA-E----------------------------VDLWQIEEEN-----------------GWL--PD--------LEKL 147 (375)
T ss_dssp HTTC-E----------------------------EEEEEEEGGG-----------------TTE--EC--------HHHH
T ss_pred HcCC-E----------------------------EEEEeccccC-----------------CCC--CC--------HHHH
Confidence 2110 0 0011111000 000 01 2445
Q ss_pred HHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcE
Q 002941 605 SQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDI 684 (863)
Q Consensus 605 e~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDi 684 (863)
++.+. .++.+|++++. ++.+|.. .|++++++|.++|++||++||+||+|++|++.+.....+.++..+++
T Consensus 148 ~~~l~--------~~~~~v~~~~~-~nptG~~-~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~ 217 (375)
T 3op7_A 148 RQLIR--------PTTKMICINNA-NNPTGAV-MDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAV 217 (375)
T ss_dssp HHHCC--------TTCCEEEEESS-CTTTCCC-CCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEE
T ss_pred HHhhc--------cCCeEEEEcCC-CCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEE
Confidence 55553 35667888886 8999965 47888999999999999999999999998777555556667777888
Q ss_pred EEeccccC-CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 002941 685 ACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELW 763 (863)
Q Consensus 685 vt~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l 763 (863)
.++||+++ +| +++|++++++++++.+... .+..+++.++++++++.++|+.. +++.++.++..+..++.+
T Consensus 218 ~s~sK~~~~~G-~r~G~v~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l 288 (375)
T 3op7_A 218 NSLSKTYSLPG-IRIGWVAANHQVTDILRDY------RDYTMICAGVFDDLVAQLALAHY--QEILERNRHILEENLAIL 288 (375)
T ss_dssp EESSSSSSCGG-GCCEEEECCHHHHHHHTTT------GGGTTSCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHH
T ss_pred eEChhhcCCcc-cceEEEEeCHHHHHHHHHH------HhhhccCCCcHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHH
Confidence 89999998 78 8999999999999988752 35567888999999999988853 234455555545555544
Q ss_pred HHHHHHHHhcCCCeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHH-HHCCcEEEecC-----CEEEEecCCCCcH
Q 002941 764 DLELIQQISSHRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKL-REDGVYMRPLG-----NVIYLMCGPCSSP 836 (863)
Q Consensus 764 ~~~l~~~~~~~p~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l-~e~GV~~~p~g-----~~lr~~ppl~~t~ 836 (863)
.+.+++++.+..++..| .+..+.+.... ....++..| .++||++.|.. +.+|+. +..++
T Consensus 289 ----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ll~~~gi~v~~g~~~~~~~~iRi~--~~~~~ 354 (375)
T 3op7_A 289 ----DQWIEEEPLVSYIRPAVVSTSFVKIAVDM--------PMEDFCLQLLQEHGVLLVPGNRFERDGYVRLG--FACEQ 354 (375)
T ss_dssp ----HHHHHHCTTEEECCCSSSSCEEEEECCSS--------CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEC--CCSCH
T ss_pred ----HHHHhhCCCceEecCCCeEEEeEEcCCCC--------CHHHHHHHHHHhCCEEEeChhhhCCCCeEEEE--ecCCH
Confidence 33445567666565554 45555554321 145677777 58899999853 788885 55667
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 837 eeid~~v~~L~~~l~~l 853 (863)
+++++++++|.++++++
T Consensus 355 ~~i~~~l~~l~~~l~~~ 371 (375)
T 3op7_A 355 ETLIKGLEKLSQFLRRF 371 (375)
T ss_dssp HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988764
No 91
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.87 E-value=9.2e-21 Score=212.27 Aligned_cols=345 Identities=9% Similarity=-0.018 Sum_probs=212.5
Q ss_pred EEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEe
Q 002941 388 SVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFS 467 (863)
Q Consensus 388 ~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~ 467 (863)
.++|.+++ .+.++...+++.+++| ..++..+ ...+++++|+++++.. +.++|+
T Consensus 5 ~~~~~~~~----~~~~~~~~~~~~~~~h-~~~~~~~--------------------~~~~~~~~l~~~~~~~--~~v~~~ 57 (379)
T 3ke3_A 5 LRQDIDPN----GLLEYSVVYTDRALNH-MSKAFQE--------------------VMNDLLSNLKTVYNAE--AAVIIP 57 (379)
T ss_dssp ---CCSTT----SCCCCCSSCCTTSCCT-TSHHHHH--------------------HHHHHHHHHHHHHTCS--EEEEEE
T ss_pred hhccCCHH----HHHHHHHhccCCCCCC-CCHHHHH--------------------HHHHHHHHHHHHhCCC--CEEEEc
Confidence 46788877 6777777777777777 5565442 2345667777777743 578999
Q ss_pred CChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcc
Q 002941 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLF 547 (863)
Q Consensus 468 ~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~ 547 (863)
+||++|++++++.+ + .| .+||++..+|||.+...+.......+
T Consensus 58 ~sgt~a~~~~~~~~-~---------~g------------d~vi~~~~~~~~~~~~~~~~~~g~~~--------------- 100 (379)
T 3ke3_A 58 GSGTYGMEAVARQL-T---------ID------------EDCLIIRNGWFSYRWTQILEKGKFAK--------------- 100 (379)
T ss_dssp SCHHHHHHHHHHHH-C---------TT------------CEEEEEECSHHHHHHHHHHHHHCCSS---------------
T ss_pred CChhHHHHHHHHhC-C---------CC------------CeEEEEeCCchhHHHHHHHHHhCCCC---------------
Confidence 99999999988643 1 12 57999999999976544332100000
Q ss_pred cCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc
Q 002941 548 LDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP 627 (863)
Q Consensus 548 ~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEP 627 (863)
.+..++.|.... ..+. ..+. ..| .+.+++.+.. .++.+|++..
T Consensus 101 ----------~~~~~~~~~~g~--------~~~~---~~~~-~~d--------~~~l~~~i~~-------~~~~~v~~~~ 143 (379)
T 3ke3_A 101 ----------SSTVLTAERTED--------TEAP---KPFA-PVD--------IETAVAKIKE-------DKSAIVYAPH 143 (379)
T ss_dssp ----------EEEEEECEESSC--------CSSC---CCEE-CCC--------HHHHHHHHHH-------HTCSEEEEES
T ss_pred ----------ceEEEecccccc--------cccc---CCCC-CCC--------HHHHHHHHhh-------cCCcEEEEEe
Confidence 011122211000 0000 0000 011 2456666642 1233455555
Q ss_pred ccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHH
Q 002941 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAV 707 (863)
Q Consensus 628 Viqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i 707 (863)
+ .+..|.+ .|.+++++|.++|++||++||+||+++ | +..+..+.+|+...+.+++|+|+|+ ..+|++++++++
T Consensus 144 ~-~~~~G~~-~~~~~l~~i~~~~~~~~~~li~D~~~~--g--~~~~~~~~~~~d~~~~s~~K~l~~~-~g~g~~~~~~~~ 216 (379)
T 3ke3_A 144 V-ETSSGII-LSEEYIKALSEAVHSVGGLLVIDCIAS--G--CVWLDMKELGIDVLISAPQKGWSST-PCAGLVMLSAAA 216 (379)
T ss_dssp E-ETTTTEE-CCHHHHHHHHHHHHHTTCEEEEECTTC--T--TCCCCHHHHTCSEEEECTTTTTCSC-CCEEEEEECHHH
T ss_pred e-cCCCcee-CCHHHHHHHHHHHHHcCCEEEEEeccc--C--CccccccccCCCEEEecchhhcCCC-CceEEEEECHHH
Confidence 4 5666754 578899999999999999999999996 4 4567777777644444556999886 578999999999
Q ss_pred HHhhhcCCccceee-----------------cccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 002941 708 FDSFVGDSKLKALL-----------------HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (863)
Q Consensus 708 ~~~l~~~~~~~~~~-----------------~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~ 770 (863)
++.+..... ..+. +.++++.++.+++++.++|+++++++ .+++.++.+.+.+++.+.+.+.
T Consensus 217 ~~~l~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g-~~~~~~~~~~l~~~l~~~l~~~ 294 (379)
T 3ke3_A 217 IKKVESTES-NCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIG-FDILRDAQWELGNRVRKVLTDK 294 (379)
T ss_dssp HHHHHTCCC-SCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhcCCC-CceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHc
Confidence 988764210 1111 11234778899999999999886543 3344455555555554444332
Q ss_pred HhcCCCeeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec----------CCEEEEecCCCCcHHHH
Q 002941 771 ISSHRTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----------GNVIYLMCGPCSSPEVC 839 (863)
Q Consensus 771 ~~~~p~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~----------g~~lr~~ppl~~t~eei 839 (863)
....+..- ...+.+..+..... ...+.+.|.++||++.+. ++.+|++++..+|++||
T Consensus 295 --g~~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di 362 (379)
T 3ke3_A 295 --GIESVAAEGFEAPGVVVSYTERD----------DMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDI 362 (379)
T ss_dssp --TCCBSBCTTCBCSSEEEEECSCH----------HHHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCH
T ss_pred --CCEecCCccccCceEEEEccCCc----------chHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHH
Confidence 22221111 11223333333211 122367788999998864 57999999888999999
Q ss_pred HHHHHHHHHHHHHHH
Q 002941 840 SQLLLKLYQRLEEFD 854 (863)
Q Consensus 840 d~~v~~L~~~l~~l~ 854 (863)
++++++|+++++++.
T Consensus 363 ~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 363 DGTVERFEKALDEVL 377 (379)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988764
No 92
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.86 E-value=9.7e-21 Score=210.80 Aligned_cols=328 Identities=12% Similarity=0.050 Sum_probs=219.6
Q ss_pred CCCCCcHHHHHHHHHHHHhcccccCC---CCC--ChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHh
Q 002941 413 PDATLQIELARDMGYTAARFGHVMFP---ENV--YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF 487 (863)
Q Consensus 413 lGh~~~p~V~~Ai~~q~~~~~~~~~~---~~~--~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~ 487 (863)
.|+ .+|+|.+|+.+++.+..+.... .+. .+...+|.++|+++++.+ .+.++|++||++|++.+++.+ + .
T Consensus 25 ~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~~~~~~~~-~-~-- 98 (390)
T 1elu_A 25 QGI-LPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVD-PNTITITDNVTTGCDIVLWGL-D-W-- 98 (390)
T ss_dssp CCC-CCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSC-GGGEEEESSHHHHHHHHHHHS-C-C--
T ss_pred cCC-CCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCC-HHHEEEeCChHHHHHHHHhCC-C-C--
Confidence 566 6789999999998875421100 122 256788999999998743 358999999999999999876 1 1
Q ss_pred hccccccccCCCccccccccEEEEecCCCccCcccccee---cCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecC
Q 002941 488 DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA---QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL 564 (863)
Q Consensus 488 ~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~---t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 564 (863)
. .| .+|++...+||+.......+ .|.. +..++.
T Consensus 99 ~----~g------------d~vl~~~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~ 134 (390)
T 1elu_A 99 H----QG------------DEILLTDCEHPGIIAIVQAIAARFGIT----------------------------YRFFPV 134 (390)
T ss_dssp C----TT------------CEEEEETTCCHHHHHHHHHHHHHHCCE----------------------------EEEECC
T ss_pred C----CC------------CEEEEecCcccHHHHHHHHHHHHhCcE----------------------------EEEEcC
Confidence 0 11 57999999999975432111 1100 011111
Q ss_pred cchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHH
Q 002941 565 PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQR 644 (863)
Q Consensus 565 P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~ 644 (863)
+... .+ .. + .+.+++.+. +++.+|++++. ++..|.+.+ ++
T Consensus 135 ~~~~-----------------~~--~~---d-----~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----~~ 174 (390)
T 1elu_A 135 AATL-----------------NQ--GD---A-----AAVLANHLG--------PKTRLVILSHL-LWNTGQVLP----LA 174 (390)
T ss_dssp GGGS-----------------SS--SC---H-----HHHHHTTCC--------TTEEEEEEESB-CTTTCCBCC----HH
T ss_pred CCCC-----------------Cc--cc---h-----HHHHHHhcC--------CCceEEEEecc-ccCCceecC----HH
Confidence 1000 00 00 0 133333331 35788899987 899998877 89
Q ss_pred HHHHHHH----HcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCCCCCCceeeeccHHHHHhhhcCCc-c
Q 002941 645 ILVKECQ----NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSFVGDSK-L 717 (863)
Q Consensus 645 ~Lrelc~----~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLggG~~Pigav~~~~~i~~~l~~~~~-~ 717 (863)
+|.++|+ +||+++|+||+++ +|.... .. ....+|+++ ++|++.|| .++|++++++++++.+..... .
T Consensus 175 ~i~~l~~~~~~~~~~~li~Dea~~-~g~~~~--~~--~~~~~d~~~~s~~K~~~~~-~g~G~~~~~~~~~~~~~~~~~g~ 248 (390)
T 1elu_A 175 EIMAVCRRHQGNYPVRVLVDGAQS-AGSLPL--DF--SRLEVDYYAFTGHKWFAGP-AGVGGLYIHGDCLGEINPTYVGW 248 (390)
T ss_dssp HHHHHHHHCCSSSCCEEEEECTTT-BTTBCC--CT--TTSCCSEEEEESSSTTCCC-TTCEEEEECTTTGGGCCCCSCCT
T ss_pred HHHHHHhhhhhhcCcEEEEEcccc-cCCcCC--Ch--hhcCCCEEEccccccccCC-CceEEEEECHHhHhhcCCccccC
Confidence 9999999 9999999999995 665432 11 124579886 89988888 689999999998887653110 0
Q ss_pred c---------ee------ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe--
Q 002941 718 K---------AL------LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-- 780 (863)
Q Consensus 718 ~---------~~------~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-- 780 (863)
. .+ ....+.+.++++++++.++++.+++.++.+++.+..+.+++.+.+.+ .+.+.+.-+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L----~~~~g~~~~~~ 324 (390)
T 1elu_A 249 RSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGL----NQLPHVHCLAT 324 (390)
T ss_dssp TTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH----HHSTTEEESCS
T ss_pred CcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH----HhcCCcEEecC
Confidence 0 00 01112346888899899999988665545556666666666554443 334444333
Q ss_pred -cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--CEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 781 -VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 781 -rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
++.|.++.+++.... ....+.+.|.++||++++.. +.+|+.++..++++++++++++|++
T Consensus 325 ~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~ 387 (390)
T 1elu_A 325 SAPQAGLVSFTVDSPL--------GHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLAD 387 (390)
T ss_dssp SCCSSSEEEEEECSSS--------CHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred ccccccEEEEEcCCCC--------CHHHHHHHHHHCCEEEEecCCCCeEEEecccCCCHHHHHHHHHHHHh
Confidence 567889988885321 14568888999999999874 8999998889999999999998865
No 93
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.86 E-value=5.5e-20 Score=206.26 Aligned_cols=333 Identities=13% Similarity=0.060 Sum_probs=211.8
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccc-cCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-MFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~-~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~A 477 (863)
+++|+.++.. .+|+ +|.+.+|+.+++++.... .......+...++++.+.+..+.. ..+.++|++||++|++.+
T Consensus 42 ~~i~l~~~~~--~~~~--~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~ 117 (389)
T 1o4s_A 42 DVINLTAGEP--DFPT--PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNA 117 (389)
T ss_dssp CCEECCCSSC--SSCC--CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHH
T ss_pred CEEEccCCCC--CCCC--CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHH
Confidence 7889887654 4664 699999999998764211 101112233444455444332421 136899999999999999
Q ss_pred HHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 478 LklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
++.+.+ .| .+|++...+||+....+... |..
T Consensus 118 ~~~l~~---------~g------------d~Vl~~~~~~~~~~~~~~~~-g~~--------------------------- 148 (389)
T 1o4s_A 118 FMALLD---------PG------------DEVIVFSPVWVSYIPQIILA-GGT--------------------------- 148 (389)
T ss_dssp HHHHCC---------TT------------CEEEEEESCCTTHHHHHHHT-TCE---------------------------
T ss_pred HHHhCC---------CC------------CEEEEcCCCchhHHHHHHHc-CCE---------------------------
Confidence 987621 12 57999999999975433211 100
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
+..++.... ..+ .-| .+.+++.+. .++.+|+++.. ++..|.+
T Consensus 149 -~~~v~~~~~-----------------~~~--~~d--------~~~l~~~l~--------~~~~~v~~~~p-~nptG~~- 190 (389)
T 1o4s_A 149 -VNVVETFMS-----------------KNF--QPS--------LEEVEGLLV--------GKTKAVLINSP-NNPTGVV- 190 (389)
T ss_dssp -EEEEECCGG-----------------GTT--CCC--------HHHHHHTCC--------TTEEEEEEESS-CTTTCCC-
T ss_pred -EEEEecCCc-----------------cCC--CCC--------HHHHHHhcc--------cCceEEEEcCC-CCCCCCC-
Confidence 011111100 000 001 234444442 24667777765 8888865
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC--CCcE--EEeccccC-CCCCCceeeeccHHHHHhhh
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC--VPDI--ACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv--~PDi--vt~sKgLg-gG~~Pigav~~~~~i~~~l~ 712 (863)
+|++++++|.++|++||+++|+||++++|...|.......+.- ..|+ .+++|.++ .| +++|++++++++++.+.
T Consensus 191 ~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~l~~~~~~~~~l~ 269 (389)
T 1o4s_A 191 YRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTG-WRVGYLISSEKVATAVS 269 (389)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcc-cceEEEEeCHHHHHHHH
Confidence 5789999999999999999999999998876664333333321 2354 47899997 77 79999999999998876
Q ss_pred cCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEc
Q 002941 713 GDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQ 792 (863)
Q Consensus 713 ~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~ 792 (863)
. .....+++.++++++++.++|+.. .+++.+..+..++.+.+.+.+. ....+. ...|.++.+.+.
T Consensus 270 ~------~~~~~~~~~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~~l~~~L~~~--g~~~~~--~~~~~~~~~~~~ 334 (389)
T 1o4s_A 270 K------IQSHTTSCINTVAQYAALKALEVD-----NSYMVQTFKERKNFVVERLKKM--GVKFVE--PEGAFYLFFKVR 334 (389)
T ss_dssp H------HHHHHTCSCCHHHHHHHHHHTTCC-----CHHHHHHHHHHHHHHHHHHHHT--TCCCCC--CSBSSEEEEECS
T ss_pred H------HhhhcccCCCHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHHHHHHhc--CCeeec--CCcceEEEEeCC
Confidence 4 224457888999999888877632 2333444444444443343332 222221 123566667764
Q ss_pred cCCcCCCCchHHHHHHHHHHH-HCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 793 AAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 793 ~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.. ..++.+.|+ ++||++.+. ++.+|+.++ .+++++++++++|.++++
T Consensus 335 -~~---------~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~--~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 335 -GD---------DVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIERLTEALDRIEDFLN 387 (389)
T ss_dssp -SC---------HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred -CC---------HHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 21 456888887 899999875 268999866 489999999999988764
No 94
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.86 E-value=3.4e-20 Score=210.50 Aligned_cols=215 Identities=11% Similarity=0.029 Sum_probs=147.2
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhc-------CCCCc----EEE
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLL-------GCVPD----IAC 686 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~-------gv~PD----ivt 686 (863)
++.+|++... ++..|.+ .+++++++|.++|++||++||+||+|++|++.|..+ ....+ ++.+| +.+
T Consensus 188 ~~~~v~l~~p-~nptG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s 265 (428)
T 1iay_A 188 KVKGLILTNP-SNPLGTT-LDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYS 265 (428)
T ss_dssp CEEEEEEESS-CTTTCCC-CCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEE
T ss_pred ceEEEEEcCC-CCCCCCc-CCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEec
Confidence 4665555443 7888865 588999999999999999999999999986666432 22222 23478 458
Q ss_pred eccccC-CCCCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc-ChhhHHhHHHHHHHHHHHH
Q 002941 687 YGKLLT-GGVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK-DPQTNHNIIPERRILRELW 763 (863)
Q Consensus 687 ~sKgLg-gG~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~-~~~l~~~l~~~~~~l~~~l 763 (863)
++|++| .| +++|++++ ++++++.+.. ...+++.++++++++.++|+..+ -+++.+++.+..+..++.+
T Consensus 266 ~sK~~g~~G-lr~G~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 336 (428)
T 1iay_A 266 LSKDMGLPG-FRVGIIYSFNDDVVNCARK--------MSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHF 336 (428)
T ss_dssp STTTSSCGG-GCEEEEEESCHHHHHHHHH--------HHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCCCC-ceEEEEEeCCHHHHHHHHH--------HHhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 899998 78 89999998 7888887763 12346788999998888776321 0113344555555555554
Q ss_pred HHHHHHHHhcCCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEecC-------CEEEEecCCCC
Q 002941 764 DLELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPLG-------NVIYLMCGPCS 834 (863)
Q Consensus 764 ~~~l~~~~~~~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~g-------~~lr~~ppl~~ 834 (863)
.+.+. +.+ +.-+++ .|.++.+++.... . .........+.+.|+++ ||++++.. +.+|+.++ .+
T Consensus 337 ~~~L~----~~g-~~~~~~~~g~~~~~~~~~~~-~-~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~-~~ 408 (428)
T 1iay_A 337 TNGLE----VVG-IKCLKNNAGLFCWMDLRPLL-R-ESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NM 408 (428)
T ss_dssp HHHHH----HTT-CCBCCCSSSSEEEEECGGGC-S-SSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SS
T ss_pred HHHHH----hcC-CcccCCCeeEEEEEechhhc-C-CCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-cC
Confidence 44433 232 222344 5788888886431 0 01112345788899886 99999742 58999876 68
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~~ 852 (863)
+++++++++++|++++++
T Consensus 409 ~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 409 DDGTVDIALARIRRFVGV 426 (428)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 999999999999988753
No 95
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.86 E-value=4.5e-20 Score=209.50 Aligned_cols=348 Identities=10% Similarity=-0.034 Sum_probs=223.4
Q ss_pred EEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcc-c-ccCCCCCChHHHHHHHHHHhhcCCC-CCCeE
Q 002941 388 SVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG-H-VMFPENVYEPALECAELLLQGVGKG-WASRA 464 (863)
Q Consensus 388 ~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~-~-~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v 464 (863)
.+++.+|+ .++|+.++.. .++ .+|+|.+|+.+++++.. . +.......+...++++.+....+.. ..+.+
T Consensus 37 ~~~~~~g~----~~i~l~~~~~--~~~--~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i 108 (437)
T 3g0t_A 37 NLEKATGT----KFCRMEMGVP--GLP--APQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARAC 108 (437)
T ss_dssp HHHHHHTC----CCEECCCCSC--CSC--CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGE
T ss_pred HHHHhcCC----CEEeccCcCC--CCC--CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccE
Confidence 45566777 8999998764 454 57999999999987522 1 1111111233444444444332211 13689
Q ss_pred EEeCChhhHHHHHHHHHHHHHHhhccccccccCCCcccccccc--EEEEecCCCccCccccceecCCCCCCCCCcCCccc
Q 002941 465 YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL--KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYS 542 (863)
Q Consensus 465 ~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~--~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~ 542 (863)
+|+++|++|++.+++... .+ . .| . +|++...+||+....+...+...
T Consensus 109 ~~t~g~t~al~~~~~~l~-~~--~----~g------------d~~~Vl~~~p~~~~~~~~~~~~g~~~------------ 157 (437)
T 3g0t_A 109 VPTVGSMQGCFVSFLVAN-RT--H----KN------------REYGTLFIDPGFNLNKLQCRILGQKF------------ 157 (437)
T ss_dssp EEESHHHHHHHHHHHHHT-TS--C----TT------------CSCCEEEEESCCHHHHHHHHHHTCCC------------
T ss_pred EEeCCHHHHHHHHHHHHh-cC--C----CC------------CccEEEEeCCCcHhHHHHHHHcCCEE------------
Confidence 999999999999998762 00 0 12 3 79999999998755443321100
Q ss_pred CCCcccCCCcccccCceeeecC-cchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEE
Q 002941 543 GRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG 621 (863)
Q Consensus 543 ~~~~~~~~p~~~~~~~~~~~~~-P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iA 621 (863)
..++. ++.+ .. ..+.+++.++. ++..+
T Consensus 158 -----------------~~v~~~~~~~--------------------------~~---d~~~l~~~l~~------~~~~~ 185 (437)
T 3g0t_A 158 -----------------ESFDLFEYRG--------------------------EK---LREKLESYLQT------GQFCS 185 (437)
T ss_dssp -----------------EEEEGGGGCT--------------------------TH---HHHHHHHHHTT------TCCCE
T ss_pred -----------------EEEeecCCCC--------------------------cc---CHHHHHHHHhc------CCceE
Confidence 01111 0000 00 03556666632 22334
Q ss_pred EEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc---------chhhh-cCCCCcEEEecccc
Q 002941 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE---------TTADL-LGCVPDIACYGKLL 691 (863)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~---------~a~e~-~gv~PDivt~sKgL 691 (863)
.+++.| ++..|.+. +.+.+++|.++|++||++||+||+|++|...+.. ..... .+....+.+++|.+
T Consensus 186 v~l~~p--~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 262 (437)
T 3g0t_A 186 IIYSNP--NNPTWQCM-TDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAF 262 (437)
T ss_dssp EEEESS--CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTT
T ss_pred EEEeCC--CCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCC
Confidence 456677 78888655 6777999999999999999999999877544321 22221 22223345789999
Q ss_pred C-CCCCCceeeeccHHHHH-h-----------------hhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHHh
Q 002941 692 T-GGVIPLAATLATNAVFD-S-----------------FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHN 751 (863)
Q Consensus 692 g-gG~~Pigav~~~~~i~~-~-----------------l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~~ 751 (863)
+ .| +++|++++++++++ . +.. .....+++.++++++++.++|+..++ +...++
T Consensus 263 ~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 335 (437)
T 3g0t_A 263 SYAG-QRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSS------ALYALSSGATHSAQWGMAAMLKACNDGEYNFRD 335 (437)
T ss_dssp SCGG-GCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTT------HHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHH
T ss_pred CCcc-ceeEEEEECHHHhhhhhhcccccccccchhHHHHHH------HHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHH
Confidence 8 78 89999999999988 6 543 22445788999999999999987542 111344
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeEe-------c-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC
Q 002941 752 IIPERRILRELWDLELIQQISSHRTVQRV-------V-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG 823 (863)
Q Consensus 752 l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-------r-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g 823 (863)
..+..+..++.+.+ .+.++ .+..+ . ..|.++.+.+.... ...+.+.|.++||++.+..
T Consensus 336 ~~~~~~~~~~~l~~----~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~L~~~gi~v~~~~ 401 (437)
T 3g0t_A 336 SVIEYGRKARIMKK----MFLDN-GFNIVYDKDGNEPLADGFYFTVGYKGMD---------SSKLIEKFVRYGMCAITLK 401 (437)
T ss_dssp HHHHHHHHHHHHHH----HHHTT-TEEESSCEETTEECCSSSEEEEEETTCC---------HHHHHHHHHHTTEECEEST
T ss_pred HHHHHHHHHHHHHH----HHHHc-CCEEeccccCCCCCceeEEEEEecCCCC---------HHHHHHHHHHcCeEEeecc
Confidence 45545555554433 33444 23222 3 56788888886222 5678899999999999864
Q ss_pred -------CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 824 -------NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 824 -------~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+.+|++++ ..+++++++++++|.++++
T Consensus 402 ~~~~~~~~~iRis~~-~~~~e~i~~~~~~l~~~~~ 435 (437)
T 3g0t_A 402 TTGSKRNEAMRICTS-LLPESQFPDLEKRLQMLNA 435 (437)
T ss_dssp TTTCCCTTCEEEECS-SSCGGGHHHHHHHHHHHHH
T ss_pred ccCCCCCCEEEEEEe-cCCHHHHHHHHHHHHHHHh
Confidence 67999876 4499999999999988764
No 96
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.85 E-value=6.4e-20 Score=209.51 Aligned_cols=341 Identities=11% Similarity=0.032 Sum_probs=214.9
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc-CCCCC-ChHHHHHHHHHHhhc----CCCCCCeEEEeCChhhH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENV-YEPALECAELLLQGV----GKGWASRAYFSDNGSTA 473 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~-~~~~~-~~~~~eLae~L~~~~----p~~~~~~v~f~~SGSeA 473 (863)
+++|+.+|. ..++ .+|+|.+|+.++++++.... ...+. .+...+|.++|++++ +.. .+.++|+++|++|
T Consensus 70 ~~i~l~~g~--~~~~--~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~-~~~i~~t~G~~~a 144 (449)
T 3qgu_A 70 KIISLGIGD--TTEP--LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRA-ADEIFISDGSKCD 144 (449)
T ss_dssp CCEECSSCC--CCCC--CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCC-GGGEEEESCHHHH
T ss_pred CEEEeeCCC--CCCC--CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCC-HHHEEEccCHHHH
Confidence 789988763 3333 57999999999998764211 11232 233567888888876 322 4689999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcc
Q 002941 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (863)
Q Consensus 474 vE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (863)
++.+ ....+ .| .+|++...+||+....+...+....++. +.+.
T Consensus 145 l~~~-~~l~~---------~g------------d~Vl~~~p~~~~~~~~~~~~g~~g~~~~----------~~~~----- 187 (449)
T 3qgu_A 145 IARI-QMMFG---------SK------------PTVAVQDPSYPVYVDTSVMMGMTGDHNG----------TGFD----- 187 (449)
T ss_dssp HHHH-HHHHC---------SS------------SCEEEEESCCTHHHHHHHHHTCSCCBCS----------SSBT-----
T ss_pred HHHH-HHHhC---------CC------------CEEEEcCCCChhHHHHHHHcCCcccccc----------cccc-----
Confidence 9987 32211 12 5799999999998765554432211110 0000
Q ss_pred cccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
.+..++..... .+ .. .+++ . .++.+|+++.. ++..
T Consensus 188 ----~~~~~~~~~~~-----------------~~--~~---------------~~~~-----~-~~~~~v~l~~p-~NPt 222 (449)
T 3qgu_A 188 ----GIEYMVCNPDN-----------------HF--FP---------------DLSK-----A-KRTDIIFFCSP-NNPT 222 (449)
T ss_dssp ----TEEEEECCGGG-----------------TT--CC---------------CGGG-----C-CCCSEEEEESS-CTTT
T ss_pred ----eeEEEeccccc-----------------CC--cC---------------ChhH-----c-CCCCEEEEeCC-CCCC
Confidence 01112211100 00 00 0111 0 23445555554 8888
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhc----CCCCcEEEeccccC-CCCCCceeeeccHHH
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLL----GCVPDIACYGKLLT-GGVIPLAATLATNAV 707 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~----gv~PDivt~sKgLg-gG~~Pigav~~~~~i 707 (863)
|.+ ++.+.+++|.++|++||++||+||+|++|++.|. ......+ ++..++.++||+++ .| +++|++++++++
T Consensus 223 G~~-~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~ 300 (449)
T 3qgu_A 223 GAA-ATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTG-VRLGWTVVPKAL 300 (449)
T ss_dssp CCC-CCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTT-CCCEEEECCTTC
T ss_pred CCc-CCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCcc-ceeEEEecCHHH
Confidence 865 4788899999999999999999999999987764 2233332 33345668999998 88 899999999887
Q ss_pred HHh--------hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE
Q 002941 708 FDS--------FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR 779 (863)
Q Consensus 708 ~~~--------l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~ 779 (863)
++. +.. .....+++.++++++++.++|+... .++.+++.+..+..++.+.+.+ .+.+ +.-
T Consensus 301 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L----~~~g-~~~ 368 (449)
T 3qgu_A 301 KYANGEPVHADWNR------VMTTCFNGASNIVQAGGLACLQPEG-LKEMNAMIKFYKENAQILKTTF----TEMG-FSV 368 (449)
T ss_dssp BCTTSCBHHHHHHH------HHHHSCCCCCHHHHHHHHHHTSHHH-HHHHHHHHHHHHHHHHHHHHHH----HHTT-CCE
T ss_pred HhhhhhhHHHHHHH------HhhcccCCCCHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHH----HHCC-Cee
Confidence 652 221 1233455789999999999887421 1233444444444555443333 3333 222
Q ss_pred ecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 780 VVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 780 vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
+.. .|.++.+.+... ...+++..|+++ ||++.|. .+.+|++ +..++++|++++++|.+++
T Consensus 369 ~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~ 437 (449)
T 3qgu_A 369 YGGDDAPYIWVGFPGK---------PSWDVFAEILERCNIVTTPGSGYGPAGEGFVRAS--AFGSRENILEAVRRFKEAY 437 (449)
T ss_dssp EESSSSSEEEEECTTS---------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHH
T ss_pred eCCCCeeEEEEECCCC---------CHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHH
Confidence 233 477888877621 145678888876 9999874 3789987 5669999999999999887
Q ss_pred HH
Q 002941 851 EE 852 (863)
Q Consensus 851 ~~ 852 (863)
++
T Consensus 438 ~~ 439 (449)
T 3qgu_A 438 GK 439 (449)
T ss_dssp C-
T ss_pred Hh
Confidence 54
No 97
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.85 E-value=1.8e-19 Score=203.29 Aligned_cols=347 Identities=12% Similarity=0.004 Sum_probs=216.4
Q ss_pred eEEeeecccccc--cCCCCCcHHHHHHHHHHHHhcccccCCCCC-ChHHHHHHHHHHhhcC------------CCCCCeE
Q 002941 400 QQFDACASWWTQ--GPDATLQIELARDMGYTAARFGHVMFPENV-YEPALECAELLLQGVG------------KGWASRA 464 (863)
Q Consensus 400 ~ylD~~sg~~~~--~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~-~~~~~eLae~L~~~~p------------~~~~~~v 464 (863)
.++|+.+|.... .+. .+|.|.+|+.+++++.... .+. .....+|.+.|+++++ .. .+++
T Consensus 34 ~~i~l~~g~p~~~~~~~--~~~~v~~a~~~~~~~~~~~---~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~-~~~v 107 (416)
T 1bw0_A 34 PIIKLSVGDPTLDKNLL--TSAAQIKKLKEAIDSQECN---GYFPTVGSPEAREAVATWWRNSFVHKEELKSTIV-KDNV 107 (416)
T ss_dssp CCEECCCCCTTTTSCSC--CCHHHHHHHHHHHHTTCSS---SCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCC-GGGE
T ss_pred CeEEecCcCCCcccCCC--CCHHHHHHHHHHhhCCccC---CcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCC-cceE
Confidence 677887766543 232 6899999999998764211 121 1122344444444433 11 3689
Q ss_pred EEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCC
Q 002941 465 YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR 544 (863)
Q Consensus 465 ~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~ 544 (863)
+|+++|++|++.+++...+ .| .+|++...+||+....+... |..
T Consensus 108 ~~~~g~~~al~~~~~~l~~---------~g------------d~vl~~~p~y~~~~~~~~~~-g~~-------------- 151 (416)
T 1bw0_A 108 VLCSGGSHGILMAITAICD---------AG------------DYALVPQPGFPHYETVCKAY-GIG-------------- 151 (416)
T ss_dssp EEESHHHHHHHHHHHHHCC---------TT------------CEEEEEESCCTHHHHHHHHT-TCE--------------
T ss_pred EEeCChHHHHHHHHHHhCC---------CC------------CEEEEcCCCcHhHHHHHHHc-CcE--------------
Confidence 9999999999999987621 12 57999999999975432211 100
Q ss_pred CcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 002941 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI 624 (863)
Q Consensus 545 ~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvI 624 (863)
+..++.... ..+ ..| .+.+++.+. +...+.++
T Consensus 152 --------------~~~v~~~~~-----------------~~~--~~d--------~~~l~~~l~-------~~~~~v~i 183 (416)
T 1bw0_A 152 --------------MHFYNCRPE-----------------NDW--EAD--------LDEIRRLKD-------DKTKLLIV 183 (416)
T ss_dssp --------------EEEEEEEGG-----------------GTT--EEC--------HHHHHHHCC-------TTEEEEEE
T ss_pred --------------EEEeecCcc-----------------cCC--CCC--------HHHHHHHhc-------cCCeEEEE
Confidence 001111000 000 011 244555553 23455677
Q ss_pred EccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-----cchhhhcCCCCcE---EEeccccC-CCC
Q 002941 625 IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-----ETTADLLGCVPDI---ACYGKLLT-GGV 695 (863)
Q Consensus 625 vEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-----~~a~e~~gv~PDi---vt~sKgLg-gG~ 695 (863)
++| ++..|.+ .|++++++|.++|++||++||+||++++|.+.|. ......++..+++ .+++|+++ .|
T Consensus 184 ~~p--~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G- 259 (416)
T 1bw0_A 184 TNP--SNPCGSN-FSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPG- 259 (416)
T ss_dssp ESS--CTTTCCC-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGG-
T ss_pred eCC--CCCCCcc-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCC-
Confidence 787 6788865 5789999999999999999999999999876665 2223323323333 37899975 67
Q ss_pred CCceeeeccHH--HHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 696 IPLAATLATNA--VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 696 ~Pigav~~~~~--i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
+++|+++++++ +++.+.... . ..+..+++.|+++++++.++|+.+. .++.++..+..+..++.+ .+.+.+
T Consensus 260 lr~G~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l----~~~L~~ 331 (416)
T 1bw0_A 260 WRLGWLLYVDPHGNGPSFLEGL--K-RVGMLVCGPCTVVQAALGEALLNTP-QEHLDQIVAKIEESAMYL----YNHIGE 331 (416)
T ss_dssp GCCEEEEEECTTCSCHHHHHHH--H-HHHHHHTCSCHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHH----HHHHTT
T ss_pred ceEEEEEeeCchhhHHHHHHHH--H-HHhccccCCCcHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHH----HHHHHh
Confidence 89999998763 444332100 0 0123567889999999999998543 344555555555555544 344555
Q ss_pred CCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHH
Q 002941 774 HRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 774 ~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L 846 (863)
.|.+..++. .|.++.+.+........ .....+...|+ ++||+++++ .+.+|+.+ .++++++++++++|
T Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~--~~~~e~l~~~l~~l 406 (416)
T 1bw0_A 332 CIGLAPTMPRGAMYLMSRIDLEKYRDI---KTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTT--TRPVEVYREAVERI 406 (416)
T ss_dssp STTEEECCCCBTTEEEEEECGGGBSSC---CSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEEC--CSCHHHHHHHHHHH
T ss_pred CCCCcccCCCeeEEEEEeCCHHHcCCC---CCHHHHHHHHHHHCCEEEecccccCCCCeEEEEe--cCCHHHHHHHHHHH
Confidence 666554444 47777787753210000 01456777775 899999984 36899986 47899999999999
Q ss_pred HHHHHHH
Q 002941 847 YQRLEEF 853 (863)
Q Consensus 847 ~~~l~~l 853 (863)
.+++++.
T Consensus 407 ~~~l~~~ 413 (416)
T 1bw0_A 407 KAFCQRH 413 (416)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888654
No 98
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.85 E-value=2.3e-20 Score=214.10 Aligned_cols=358 Identities=12% Similarity=0.011 Sum_probs=206.6
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.|||+.+++++ +.|.+++.+++..... . -...+...+|.++|+++++ .++++|++||++|++.|++
T Consensus 44 ~ylD~~~~~~~--------~~v~~a~~~~~~~~~~-~--y~~~~~~~~l~~~la~~~~---~~~v~~t~ggt~A~~~al~ 109 (467)
T 1ax4_A 44 VYIDLLTDSGT--------NAMSDHQWAAMITGDE-A--YAGSRNYYDLKDKAKELFN---YDYIIPAHQGRGAENILFP 109 (467)
T ss_dssp CSEECSCSSSC--------CCEEHHHHHHHHTCCC-C--SSSCHHHHHHHHHHHHHHC---CCEEEEESSHHHHHHHHHH
T ss_pred eeeecccCcCC--------HHHHHHHHHHHhhccc-c--cccCccHHHHHHHHHHHcC---CCcEEEcCCcHHHHHHHHH
Confidence 89999876644 5677887777654321 1 1134667899999999997 3689999999999999999
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCc-cCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYH-GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYH-G~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
+++ .++... |+ .+..||.. .+| +.+..++...|...... ..+.
T Consensus 110 ~~~-~~~~~~----Gd---------~~~~viv~--~~~~~~~~~~~~~~g~~~~~~--------------~~~~------ 153 (467)
T 1ax4_A 110 VLL-KYKQKE----GK---------AKNPVFIS--NFHFDTTAAHVELNGCKAINI--------------VTEK------ 153 (467)
T ss_dssp HHH-HHHHHT----TC---------CSSCEEEE--SSCCHHHHHHHHHTTCEEEEC--------------BCGG------
T ss_pred HHH-HhhccC----CC---------ccceEEEe--ccccchhhHHHhccCCceecc--------------cccc------
Confidence 984 332212 21 00115554 555 55555555443211000 0000
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
.++... . ..++...| .+.|++.+.+ .+.+++++|++||+ ++.+|..++
T Consensus 154 ----~~~~~~----------~-----~~~~~~~d--------~~~le~~i~~----~~~~~~~~vi~~~~-~np~gG~~~ 201 (467)
T 1ax4_A 154 ----AFDSET----------Y-----DDWKGDFD--------IKKLKENIAQ----HGADNIVAIVSTVT-CNSAGGQPV 201 (467)
T ss_dssp ----GGCTTS----------C-----CTTTTCBC--------HHHHHHHHHH----HCGGGEEEEEEESS-BTTTTSBCC
T ss_pred ----cccccc----------c-----CCcccccC--------HHHHHHHHHh----cCCCCeeEEEEecc-ccCCCccCC
Confidence 000000 0 00000012 2456666653 11247899999997 888855788
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeccccc---c-------cccCCcchhhhcC----CCCcEEEe--ccccCCCCCCceeee
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTG---F-------WRLGVETTADLLG----CVPDIACY--GKLLTGGVIPLAATL 702 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TG---f-------GRtG~~~a~e~~g----v~PDivt~--sKgLggG~~Pigav~ 702 (863)
+.+++++|+++|++||++||+||++.. + +..|.... .++ ..+|++++ +|++ | +|+|+++
T Consensus 202 ~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~~--g-~~~Gg~~ 276 (467)
T 1ax4_A 202 SMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIK--EVIFDMYKYADALTMSAKKDP--L-LNIGGLV 276 (467)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHH--HHHHHHGGGCSEEEEETTSTT--C-CSSCEEE
T ss_pred ChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchh--hhhhhhccccceEEEeccccC--C-CCcceEE
Confidence 899999999999999999999999742 0 22222110 011 13677654 6655 4 5776655
Q ss_pred -cc-H-HHHHhhhcCCccceeecccCCCccHHHHHHHHH-HHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee
Q 002941 703 -AT-N-AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAK-SIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ 778 (863)
Q Consensus 703 -~~-~-~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalA-aL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~ 778 (863)
++ + ++++.+..... .+....++++++..+.++.+ +|+.+.+++..++..++.+++.+.| .+ ...+.+.
T Consensus 277 ~~~d~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L----~~--~~~~~~~ 348 (467)
T 1ax4_A 277 AIRDNEEIFTLARQRCV--PMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRL----RE--AGIPIQY 348 (467)
T ss_dssp EESSCHHHHHHHHHHHH--HHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----HH--TTCCBCS
T ss_pred EeCCHHHHHHHHHhhcc--ccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----Hh--CCCCccc
Confidence 45 5 78876642100 01122356666655544333 6766555444444445555554433 22 2334333
Q ss_pred EecccceEEEEEEccCCcCCCCchHHHHHHHHHH-HHCCcEEEec-----------C-------CEEEEecC-CCCcHHH
Q 002941 779 RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKL-REDGVYMRPL-----------G-------NVIYLMCG-PCSSPEV 838 (863)
Q Consensus 779 ~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l-~e~GV~~~p~-----------g-------~~lr~~pp-l~~t~ee 838 (863)
..+ |.++.+.+..-.............++..| .++||.+.+. | +.+||++| ..+|+++
T Consensus 349 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~ 426 (467)
T 1ax4_A 349 PTG--GHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDH 426 (467)
T ss_dssp SCC--SSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHH
T ss_pred CCC--ceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHH
Confidence 333 44444442110000000011256788888 8999999872 2 68999988 4589999
Q ss_pred HHHHHHHHHHHHHHHH
Q 002941 839 CSQLLLKLYQRLEEFD 854 (863)
Q Consensus 839 id~~v~~L~~~l~~l~ 854 (863)
+++++++|+++++++.
T Consensus 427 i~~~~~~l~~~~~~~~ 442 (467)
T 1ax4_A 427 MDYIADALIGLKEKFA 442 (467)
T ss_dssp HHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999887754
No 99
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.85 E-value=1.1e-19 Score=203.61 Aligned_cols=334 Identities=13% Similarity=0.095 Sum_probs=212.9
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc-----cccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-----HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTA 473 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~-----~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeA 473 (863)
.++|+.+| ...++ .+|.|.+|+.+++++.. .+.......+...++++.+.+..+.+ ..+.++|+++|++|
T Consensus 36 ~~i~l~~~--~~~~~--~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~a 111 (398)
T 3ele_A 36 NVYDFSIG--NPSIP--APQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAAS 111 (398)
T ss_dssp GCEECCSC--CCCSC--CCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred CeEEeecC--CCCCC--CCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHH
Confidence 78898876 22233 57999999999998732 11111222355666677766554421 14689999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcc
Q 002941 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (863)
Q Consensus 474 vE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (863)
++.+++..++ .|+ .+|++...+||+....+...+..
T Consensus 112 l~~~~~~l~~---------~g~-----------d~vl~~~p~~~~~~~~~~~~g~~------------------------ 147 (398)
T 3ele_A 112 LSICFRALTS---------DAY-----------DEFITIAPYFPEYKVFVNAAGAR------------------------ 147 (398)
T ss_dssp HHHHHHHHCC---------STT-----------CEEEEESSCCTHHHHHHHHTTCE------------------------
T ss_pred HHHHHHHHcC---------CCC-----------CEEEEeCCCchhhHHHHHHcCCE------------------------
Confidence 9999987721 121 57999999999875443322100
Q ss_pred cccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
+..++.... .+ .-| .+.+++.+. .++.+|++... ++..
T Consensus 148 -----~~~v~~~~~------------------~~--~~d--------~~~l~~~l~--------~~~~~v~~~~p-~npt 185 (398)
T 3ele_A 148 -----LVEVPADTE------------------HF--QID--------FDALEERIN--------AHTRGVIINSP-NNPS 185 (398)
T ss_dssp -----EEEECCCTT------------------TS--SCC--------HHHHHHTCC--------TTEEEEEECSS-CTTT
T ss_pred -----EEEEecCCc------------------CC--cCC--------HHHHHHHhC--------cCCCEEEEcCC-CCCC
Confidence 001111100 00 011 234444442 24566666544 8888
Q ss_pred CceeCCHHHHHHHHHHHHH------cCCeEEEecccccccccCCc--chhhhcCCCCcEEEeccccC-CCCCCceeeecc
Q 002941 634 GMHMVDPLFQRILVKECQN------RKIPVIFDEVFTGFWRLGVE--TTADLLGCVPDIACYGKLLT-GGVIPLAATLAT 704 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~------~gilLI~DEV~TGfGRtG~~--~a~e~~gv~PDivt~sKgLg-gG~~Pigav~~~ 704 (863)
|.+. +.+.+++|.++|++ ||+++|+||+|++|++.|.. ...+.++....+.+++|.++ .| +++|+++++
T Consensus 186 G~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~ 263 (398)
T 3ele_A 186 GTVY-SEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPG-ERIGYVLVP 263 (398)
T ss_dssp CCCC-CHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTT-TCCEEEECC
T ss_pred CCCC-CHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCcc-ceeEEEEEc
Confidence 8755 67779999999999 99999999999999877743 22334444445558899998 88 899999999
Q ss_pred HHHHH------hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee
Q 002941 705 NAVFD------SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ 778 (863)
Q Consensus 705 ~~i~~------~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~ 778 (863)
+++++ .+... .....+++.++++++++.+.++ +.+..+++.++.+++.+.| .+. + +.
T Consensus 264 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~l~~~L----~~~----g-~~ 326 (398)
T 3ele_A 264 DEVYDKAELYAAVCGA-----GRALGYVCAPSLFQKMIVKCQG---ATGDINAYKENRDLLYEGL----TRI----G-YH 326 (398)
T ss_dssp TTSTTHHHHHHHHHHH-----HHHTTCCCSCHHHHHHHTTCTT---CCCCHHHHHHHHHHHHHHH----HHH----T-CC
T ss_pred chhhhHHHHHHHHHHH-----hhhccccCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHH----HHc----C-Ce
Confidence 87543 22210 0122456777888777766554 3334455555555555433 222 2 12
Q ss_pred Eeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 779 RVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 779 ~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.+... |.++.+.+.... ...+.+.|.++||++.+. .+.+|+.. .+++++|++++++|.+++++
T Consensus 327 ~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~--~~~~e~i~~~l~~l~~~l~~ 395 (398)
T 3ele_A 327 CFKPDGAFYMFVKALEDD---------SNAFCEKAKEEDVLIVAADGFGCPGWVRISY--CVDREMIKHSMPAFEKIYKK 395 (398)
T ss_dssp EECCSBSSEEEEECSSSC---------HHHHHHHHHTTTEECEESGGGTCTTEEEEEC--CSCHHHHHHHHHHHHHHHHH
T ss_pred ecCCCeeEEEEEEcCCCC---------HHHHHHHHHHCCEEEeCccccCCCCeEEEEe--cCCHHHHHHHHHHHHHHHHH
Confidence 22333 555777765322 557888899999999884 37899975 47999999999999998876
Q ss_pred H
Q 002941 853 F 853 (863)
Q Consensus 853 l 853 (863)
+
T Consensus 396 ~ 396 (398)
T 3ele_A 396 Y 396 (398)
T ss_dssp H
T ss_pred h
Confidence 5
No 100
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.85 E-value=2e-19 Score=202.17 Aligned_cols=354 Identities=11% Similarity=0.019 Sum_probs=218.8
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc--ccCCCCCChHHHHHHHHHHhhcCCC-CC-CeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKG-WA-SRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~p~~-~~-~~v~f~~SGSeAvE 475 (863)
..+|+..|. ..++ .+|.|.+|+.+++.+... +.......+...++++.+.+..+.. .. ++++|+++|++|++
T Consensus 24 ~~i~l~~~~--~~~~--~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~ 99 (410)
T 3e2y_A 24 SVVNLGQGF--PDIS--PPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLF 99 (410)
T ss_dssp TSEECSSCC--CCSC--CCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CeEEecCCC--CCCC--CCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 456666554 2333 479999999999975421 1111112344555666665543321 02 58999999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.+++.+.+ .| .+|++...+||+........+...
T Consensus 100 ~~~~~~~~---------~g------------d~vl~~~p~~~~~~~~~~~~g~~~------------------------- 133 (410)
T 3e2y_A 100 NSIQGLVD---------PG------------DEVIIMVPFYDCYEPMVRMAGAVP------------------------- 133 (410)
T ss_dssp HHHHHHCC---------TT------------CEEEEEESCCTTHHHHHHHTTCEE-------------------------
T ss_pred HHHHHhcC---------CC------------CEEEEeCCCchhhHHHHHHcCCEE-------------------------
Confidence 99987621 12 579999999988654332221100
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
..++...... .+ .... ...+ .-| .+.+++.+ ..++.+|+++.. ++.+|.
T Consensus 134 ----~~~~~~~~~~-----~g-~~~~--~~~~--~~d--------~~~l~~~~--------~~~~~~v~~~~p-~nptG~ 182 (410)
T 3e2y_A 134 ----VFIPLRSKPT-----DG-MKWT--SSDW--TFD--------PRELESKF--------SSKTKAIILNTP-HNPLGK 182 (410)
T ss_dssp ----EEEECEECCC-----CS-SCCB--GGGE--ECC--------HHHHHTTC--------CTTEEEEEEESS-CTTTCC
T ss_pred ----EEEecccccc-----cc-cccc--ccCC--cCC--------HHHHHhhc--------CCCceEEEEeCC-CCCCCc
Confidence 0011100000 00 0000 0000 011 13333333 135778888876 899997
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcC----CCCcEEEeccccC-CCCCCceeeeccHHHHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLG----CVPDIACYGKLLT-GGVIPLAATLATNAVFD 709 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~g----v~PDivt~sKgLg-gG~~Pigav~~~~~i~~ 709 (863)
+. +++.+++|.++|++||+++|+||+|++|++.|..+ ....+. ...++.++||.++ .| +++|++++++++++
T Consensus 183 ~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~ 260 (410)
T 3e2y_A 183 VY-TRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTG-WKLGWSIGPAHLIK 260 (410)
T ss_dssp CC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGG-GCCEEEECCHHHHH
T ss_pred Cc-CHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCC-ceEEEEEECHHHHH
Confidence 65 77889999999999999999999999998887532 333332 2234457899998 78 89999999999998
Q ss_pred hhhcCCccceeecccCCCccHHHHHHHHHHHHH-----hcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc
Q 002941 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKW-----FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG 784 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~-----l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G 784 (863)
.+.. ..+..+++.++++++++.++|+. ....++.+++.+..+..++.+.+ .+.+++........|
T Consensus 261 ~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~L~~~g~~~~~~~~~ 330 (410)
T 3e2y_A 261 HLQT------VQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVR----LLNSVGLKPIVPDGG 330 (410)
T ss_dssp HHHH------HHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHH----HHHTTTCEEEBCSBS
T ss_pred HHHH------HHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHH----HHHHCCCeecCCCcc
Confidence 8764 23556888999999999999984 12234456666666666665543 344454333345667
Q ss_pred eEEEEEEccCCcCCCC---chHHHHHHHHHH-HHCCcEEEec------------CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 785 TLCAIELQAAGCNAGY---GSLYAASLLKKL-REDGVYMRPL------------GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 785 l~~~iel~~~~~~~~~---~~~~~~~l~~~l-~e~GV~~~p~------------g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
.++.+++......... ......+++..+ .++||++.|+ .+.+|++ +..++++|++++++|++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis--~~~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 331 YFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFC--FIKKDSTLDAAEEIFRA 408 (410)
T ss_dssp SEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEE--CCCCHHHHHHHHHHHHT
T ss_pred EEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEE--EcCCHHHHHHHHHHHHh
Confidence 8888888642210000 001233566655 4779999873 2678886 55699999999998864
No 101
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.85 E-value=4.6e-19 Score=199.23 Aligned_cols=343 Identities=9% Similarity=-0.019 Sum_probs=217.6
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc---CCCCC---ChHHHHHHHHHHhhcCCCCCCeEEEeCChhhH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM---FPENV---YEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~---~~~~~---~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeA 473 (863)
.++++.++.. ++ .+|+|.+|+.++++++.... ...+. ++...+|.++|+++++....+.++|++||++|
T Consensus 28 ~~i~l~~~~~----~~-~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a 102 (420)
T 1t3i_A 28 PLVYLDNAAT----SQ-KPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEA 102 (420)
T ss_dssp ECEECBTTTC----CC-CCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHH
T ss_pred ceEEecCCcc----CC-CCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHH
Confidence 4555554322 34 68999999999998753210 01111 24567899999999875113689999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccce---ecCCCCCCCCCcCCcccCCCcccCC
Q 002941 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME---AQAPSPYTGFLQQPWYSGRGLFLDP 550 (863)
Q Consensus 474 vE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals---~t~~~~~~~~~~~~~~~~~~~~~~~ 550 (863)
++.+++.+.+ .. .. . ..+|++...+||+....... ..|.
T Consensus 103 ~~~~~~~~~~-~~--~~--~------------gd~Vl~~~~~~~~~~~~~~~~~~~~g~--------------------- 144 (420)
T 1t3i_A 103 INLVAYSWGM-NN--LK--A------------GDEIITTVMEHHSNLVPWQMVAAKTGA--------------------- 144 (420)
T ss_dssp HHHHHHHTHH-HH--CC--T------------TCEEEEETTCCGGGTHHHHHHHHHHCC---------------------
T ss_pred HHHHHHHhhh-cc--cC--C------------CCEEEECcchhHHHHHHHHHHHHhcCc---------------------
Confidence 9999998732 10 00 1 15799999999996421111 1110
Q ss_pred CcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 002941 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (863)
Q Consensus 551 p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViq 630 (863)
.+..++.+..+ ..| .+.+++.+. +++.+|+++++ +
T Consensus 145 -------~~~~v~~~~~~---------------------~~d--------~~~l~~~l~--------~~~~~v~~~~~-~ 179 (420)
T 1t3i_A 145 -------VLKFVQLDEQE---------------------SFD--------LEHFKTLLS--------EKTKLVTVVHI-S 179 (420)
T ss_dssp -------EEEEECBCTTS---------------------SBC--------HHHHHHHCC--------TTEEEEEEESB-C
T ss_pred -------EEEEeccCCCC---------------------CcC--------HHHHHHhhC--------CCceEEEEeCC-c
Confidence 00111111000 011 244555553 35788999997 8
Q ss_pred cCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHH
Q 002941 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVF 708 (863)
Q Consensus 631 g~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~ 708 (863)
+..|.+.+ +++|.++|++||+++|+||+++ +|... +....++ +|++++| |.++ + ..+|+++++++++
T Consensus 180 nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~~--~di~~~s~sK~~~-~-~g~G~~~~~~~~~ 248 (420)
T 1t3i_A 180 NTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP--LDVQLID--CDWLVASGHKMCA-P-TGIGFLYGKEEIL 248 (420)
T ss_dssp TTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHHHT--CSEEEEEGGGTTS-C-TTCEEEEECHHHH
T ss_pred ccccCcCC----HHHHHHHHHHcCCEEEEEhhhc-cCCcc--CchhhcC--CCEEEEehhhhcC-C-CceEEEEEchHHH
Confidence 99998876 8999999999999999999995 54432 2333444 7998776 9554 3 3489999999999
Q ss_pred HhhhcCCccce--------------eecccCCCccHHHHHHHHH-HHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 709 DSFVGDSKLKA--------------LLHGHSYSAHALGCAAAAK-SIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 709 ~~l~~~~~~~~--------------~~~~~T~~~~pla~AAalA-aL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
+.+........ ....++++.++++++++++ +++.+++.. .+++.+..+.+.+.+.+ .+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~-~~~~~~~~~~~~~~l~~----~L~~ 323 (420)
T 1t3i_A 249 EAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLG-MENIHNYEVELTHYLWQ----GLGQ 323 (420)
T ss_dssp HHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHH----HHHT
T ss_pred hhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHH----HHHh
Confidence 88764210000 0011234556666666655 788775422 23344444444444433 3344
Q ss_pred CCCeeEec------ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------------CCEEEEecCCCC
Q 002941 774 HRTVQRVV------ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCS 834 (863)
Q Consensus 774 ~p~v~~vr------g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------------g~~lr~~ppl~~ 834 (863)
.+.+.-+. +.|.++.+.+.... ...+.+.|.++||++++. .+.+|+.++..+
T Consensus 324 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~ 394 (420)
T 1t3i_A 324 IPQLRLYGPNPKHGDRAALASFNVAGLH---------ASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYN 394 (420)
T ss_dssp CTTEEEESCCGGGSCBCSEEEEEETTBC---------HHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTC
T ss_pred CCCeEEeCCCccccccCCEEEEEECCCC---------HHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEEecCCCC
Confidence 54433222 24888888875321 456788899999999875 478999988888
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~~l~~ 855 (863)
+++++++++++|+++++.+.+
T Consensus 395 ~~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 395 TKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp CHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999877643
No 102
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.84 E-value=9.5e-21 Score=215.14 Aligned_cols=341 Identities=12% Similarity=0.048 Sum_probs=219.9
Q ss_pred eEEeeecccccccCCCCCcHHH--HHHHHHHHHhcccccCCCCCCh-HHHHHHHHHHhhc-----CCCCCCe---EEEeC
Q 002941 400 QQFDACASWWTQGPDATLQIEL--ARDMGYTAARFGHVMFPENVYE-PALECAELLLQGV-----GKGWASR---AYFSD 468 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V--~~Ai~~q~~~~~~~~~~~~~~~-~~~eLae~L~~~~-----p~~~~~~---v~f~~ 468 (863)
.++|+.+|... .+|+ +|.+ .+++.+++++... ..|... -..+|.+.|++++ +.. .+. ++|++
T Consensus 48 ~~i~l~~g~~~-~~~~--~~~~~~~~a~~~~~~~~~~---~~y~~~~g~~~lr~~ia~~~~~~~~~~~-~~~~~~i~~t~ 120 (430)
T 2x5f_A 48 TTYNATIGMAT-NKDG--KMFASSLDAMFNDLTPDEI---FPYAPPQGIEELRDLWQQKMLRDNPELS-IDNMSRPIVTN 120 (430)
T ss_dssp CSEECCCSSCE-ETTE--ECCCHHHHTTBSSCCGGGT---SSCCCTTCCHHHHHHHHHHHHHHCTTCC-GGGBCCCEEES
T ss_pred CcEEeeeeecc-CCCC--chhhHHHHHHHHhcCcccc---cccCCCCCCHHHHHHHHHHHhccCcccC-CCccceEEEcC
Confidence 68899887654 6774 5767 8887777654111 112221 1345666666655 422 357 99999
Q ss_pred ChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccce-ecCCCCCCCCCcCCcccCCCcc
Q 002941 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME-AQAPSPYTGFLQQPWYSGRGLF 547 (863)
Q Consensus 469 SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals-~t~~~~~~~~~~~~~~~~~~~~ 547 (863)
+|++|++.+++...+ .| .+|++...+||+....+.. .+. .
T Consensus 121 g~~~al~~~~~~l~~---------~g------------d~Vl~~~p~y~~~~~~~~~~~g~-~----------------- 161 (430)
T 2x5f_A 121 ALTHGLSLVGDLFVN---------QD------------DTILLPEHNWGNYKLVFNTRNGA-N----------------- 161 (430)
T ss_dssp HHHHHHHHHHHHHCC---------TT------------CEEEEESSCCTHHHHHHTTTTCC-E-----------------
T ss_pred CchHHHHHHHHHHhC---------CC------------CEEEEcCCcCccHHHHHHHhcCC-e-----------------
Confidence 999999999987621 12 5799999999997544322 110 0
Q ss_pred cCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc
Q 002941 548 LDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP 627 (863)
Q Consensus 548 ~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEP 627 (863)
+..++.... . + ..| .+.+++.+.. .+.+..+.++++|
T Consensus 162 -----------~~~~~~~~~-----------------~-~--~~d--------~~~l~~~l~~----~~~~~~~v~i~~p 198 (430)
T 2x5f_A 162 -----------LQTYPIFDK-----------------D-G--HYT--------TDSLVEALQS----YNKDKVIMILNYP 198 (430)
T ss_dssp -----------EEEECCBCT-----------------T-S--CBC--------SHHHHHHHHH----CCSSEEEEEECSS
T ss_pred -----------EEEEeccCc-----------------c-C--CcC--------HHHHHHHHHh----cCCCCEEEEEcCC
Confidence 001111100 0 0 011 1345566643 1123345566777
Q ss_pred ccccCCCceeCCHHHHHHHHHHHHH-----cCCeEEEecccccccccCCcc-hh--hhcCCCCc------EEEeccccC-
Q 002941 628 VVHAAGGMHMVDPLFQRILVKECQN-----RKIPVIFDEVFTGFWRLGVET-TA--DLLGCVPD------IACYGKLLT- 692 (863)
Q Consensus 628 Viqg~gG~~~pp~~fL~~Lrelc~~-----~gilLI~DEV~TGfGRtG~~~-a~--e~~gv~PD------ivt~sKgLg- 692 (863)
++..|. +++.+++++|.++|++ ||+++|+||++++|++.|..+ .. ...+..++ +.+++|.++
T Consensus 199 --~nptG~-~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 275 (430)
T 2x5f_A 199 --NNPTGY-TPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFA 275 (430)
T ss_dssp --CTTTCC-CCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTC
T ss_pred --CCCCCC-cCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCC
Confidence 788886 4688999999999999 999999999999997776522 22 22244455 347799997
Q ss_pred CCCCCceeeec---cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHH-HhcChhhHHh---HHHHHHHHHHHHHH
Q 002941 693 GGVIPLAATLA---TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIK-WFKDPQTNHN---IIPERRILRELWDL 765 (863)
Q Consensus 693 gG~~Pigav~~---~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~-~l~~~~l~~~---l~~~~~~l~~~l~~ 765 (863)
.| +++|++++ ++++++.+.... ....+..+++.++++++++.++|+ .. ++.++ +.+..+..++.+
T Consensus 276 ~G-~riG~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~~~~l-- 347 (430)
T 2x5f_A 276 WG-FRVGFMTFGTSDQTTKEVLEAKV--KGLIRSNISSGPLPTQSAVKHVLKNNK---QFDKEIEQNIQTLKERYEVT-- 347 (430)
T ss_dssp GG-GCCEEEEEBCCCHHHHHHHHHHH--HHHHHTTTSSCCHHHHHHHHHHHHSCH---HHHHHHHHHHHHHHHHHHHH--
T ss_pred CC-CCeEEEEEecCCHHHHHHHHHHH--hhhhhcccCCCChHHHHHHHHHHccCh---HHHHHHHHHHHHHHHHHHHH--
Confidence 78 89999999 999998876411 001122678899999999999987 32 23333 444444444433
Q ss_pred HHHHHHh----cCCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-CCEEEEecCCCCcHHH
Q 002941 766 ELIQQIS----SHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-GNVIYLMCGPCSSPEV 838 (863)
Q Consensus 766 ~l~~~~~----~~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-g~~lr~~ppl~~t~ee 838 (863)
.+.+. +. .+..+... |+++.+.+... ....++..|.+ +||++.|. .+.+|+.++. .++++
T Consensus 348 --~~~L~~~~~~~-g~~~~~~~~g~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~~~iRis~~~-~~~e~ 414 (430)
T 2x5f_A 348 --KEVVYADQYHS-HWQAYDFNSGYFMAIKVHDV---------DPEALRKHLIDKYSIGVIALNATDIRIAFSC-VEKDD 414 (430)
T ss_dssp --HHHHTCGGGTT-TEEECCCCBSSEEEEEESSS---------CHHHHHHHHHHHHCEECEECSSSEEEEEGGG-SCGGG
T ss_pred --HHHHHhhCCCC-CceeeCCCceEEEEeCCCCC---------CHHHHHHHHHHhCCEEEecCCCCeEEEEEec-CCHHH
Confidence 33344 23 24444444 56688888621 14578888987 99999996 4789998764 58999
Q ss_pred HHHHHHHHHHHHHHH
Q 002941 839 CSQLLLKLYQRLEEF 853 (863)
Q Consensus 839 id~~v~~L~~~l~~l 853 (863)
+++++++|.++++++
T Consensus 415 i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 415 IPHVFDSIAKAIDDL 429 (430)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988764
No 103
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.84 E-value=3.3e-19 Score=197.41 Aligned_cols=322 Identities=14% Similarity=0.137 Sum_probs=216.7
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.++|+.++. +.++ .+|+|.+|+.++++.... +......+|.++|+++++.. .+.++|+++|++|++.+++
T Consensus 31 ~~i~l~~~~--~~~~--~~~~v~~a~~~~~~~~~~-----y~~~~~~~lr~~la~~~~~~-~~~v~~~~g~~~a~~~~~~ 100 (365)
T 3get_A 31 EVIKLASNE--NPFG--TPPKAIECLRQNANKAHL-----YPDDSMIELKSTLAQKYKVQ-NENIIIGAGSDQVIEFAIH 100 (365)
T ss_dssp CCEECSSCC--CTTC--SCHHHHHHHHHHGGGTTS-----CCCTTCHHHHHHHHHHHTCC-GGGEEEESSHHHHHHHHHH
T ss_pred ceEEecCCC--CCCC--CCHHHHHHHHHHHHhhcc-----CCCCChHHHHHHHHHHhCCC-cceEEECCCHHHHHHHHHH
Confidence 788988754 3466 479999999999875432 22222358888898888743 4689999999999999998
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
..++ .| .+|++...+|++....+...+.
T Consensus 101 ~l~~---------~g------------d~vl~~~~~~~~~~~~~~~~g~------------------------------- 128 (365)
T 3get_A 101 SKLN---------SK------------NAFLQAGVTFAMYEIYAKQCGA------------------------------- 128 (365)
T ss_dssp HHCC---------TT------------CEEEECSSCCTHHHHHHHHHTC-------------------------------
T ss_pred HHhC---------CC------------CEEEEeCCChHHHHHHHHHcCC-------------------------------
Confidence 7621 12 5799999988876443322210
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..+.+|. . .+ .. ...+.+++.+. .++.+|+++.. ++..|.+. |
T Consensus 129 ~~~~v~~-~----------------------~~--~~--~d~~~l~~~l~--------~~~~~v~~~~p-~nptG~~~-~ 171 (365)
T 3get_A 129 KCYKTQS-I----------------------TH--NL--DEFKKLYETHK--------DEIKLIFLCLP-NNPLGECL-D 171 (365)
T ss_dssp EEEECSS-S----------------------SC--CH--HHHHHHHHHTT--------TTEEEEEEESS-CTTTCCCC-C
T ss_pred EEEEEec-C----------------------CC--CC--CCHHHHHHHhC--------CCCCEEEEcCC-CCCCCCCc-C
Confidence 0011110 0 00 01 01245555552 34566666543 78888765 5
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccc--cC-C-cchhhh---cCCCCcEEEeccccC-CCCCCceeeeccHHHHHhh
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWR--LG-V-ETTADL---LGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSF 711 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGR--tG-~-~~a~e~---~gv~PDivt~sKgLg-gG~~Pigav~~~~~i~~~l 711 (863)
.+.+++|.++| ++|+++|+||+|++|.. .| . ...... ++....+.+++|.++ .| +++|++++++++++.+
T Consensus 172 ~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~ 249 (365)
T 3get_A 172 ASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGG-LRIGYGIANANIISAF 249 (365)
T ss_dssp HHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTT-TCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcc-hheEEEEcCHHHHHHH
Confidence 66677777777 67999999999987752 22 2 122222 233333447899997 77 8999999999999988
Q ss_pred hcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEE
Q 002941 712 VGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791 (863)
Q Consensus 712 ~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel 791 (863)
.. ...+++.++++++++.++|+ +.++.++.++..+..++.+.+. +.++ .+..+.+.|.++.+.+
T Consensus 250 ~~--------~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~----l~~~-g~~~~~~~~~~~~~~~ 313 (365)
T 3get_A 250 YK--------LRAPFNVSNLALKAAVAAMD---DDEFTEKTLENNFSQMELYKEF----AKKH-NIKIIDSYTNFITYFF 313 (365)
T ss_dssp HH--------HSCTTCSCHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHHHH----HHHT-TCEECCCSSSEEEEEC
T ss_pred HH--------hcCCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHH----HHhC-CCEECCCCCeEEEEEC
Confidence 64 22456789999999999887 3345556666666666655443 3334 3444567788888877
Q ss_pred ccCCcCCCCchHHHHHHHHHHHHCCcEEEec----CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 792 QAAGCNAGYGSLYAASLLKKLREDGVYMRPL----GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 792 ~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~----g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.... ...+.+.|.++||++.+. .+.+|+... +++++++++++|++++
T Consensus 314 ~~~~---------~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 314 DEKN---------STDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp SSSC---------HHHHHHHHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred CCCC---------HHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 5421 567889999999999986 388999843 8999999999998865
No 104
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.84 E-value=4.9e-19 Score=199.41 Aligned_cols=341 Identities=13% Similarity=0.046 Sum_probs=218.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhc-ccccCC----CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFP----ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~-~~~~~~----~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAv 474 (863)
.|||..+ .|+ .+|.|.+|+.+++++. +..... ....+...++.++|+++++.+ .+.++|++||++|+
T Consensus 30 ~yld~~~------~~~-~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~al 101 (416)
T 1qz9_A 30 IYLDGNS------LGA-RPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGAR-DGEVVVTDTTSINL 101 (416)
T ss_dssp EECCTTT------SCC-CBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCC-TTSEEECSCHHHHH
T ss_pred EeecCCC------cCC-CcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCC-cccEEEeCChhHHH
Confidence 7888643 345 6899999999999763 211100 012356688999999998753 36899999999999
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcccccee-cCCCCCCCCCcCCcccCCCcccCCCcc
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA-QAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~-t~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (863)
+.|++.+++ +.. .+. +| .++|.....+|+++..++.. .....+ + .
T Consensus 102 ~~al~~~~~-~~~-~~~-~g------------d~vii~~~~~~~~~~~~~~~~~~~~~~-g---------------~--- 147 (416)
T 1qz9_A 102 FKVLSAALR-VQA-TRS-PE------------RRVIVTETSNFPTDLYIAEGLADMLQQ-G---------------Y--- 147 (416)
T ss_dssp HHHHHHHHH-HHH-HHS-TT------------CCEEEEETTSCHHHHHHHHHHHHHHCS-S---------------C---
T ss_pred HHHHHhhcc-ccc-ccC-CC------------CcEEEEcCCCCCchHHHHHHHHHHhcC-C---------------c---
Confidence 999998732 210 001 12 34777788888876554321 100000 0 0
Q ss_pred cccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
.+..++.+ +.+++.+. +++.+|+++++ ++..
T Consensus 148 ----~~~~v~~~------------------------------------~~l~~~i~--------~~~~~v~~~~~-~npt 178 (416)
T 1qz9_A 148 ----TLRLVDSP------------------------------------EELPQAID--------QDTAVVMLTHV-NYKT 178 (416)
T ss_dssp ----EEEEESSG------------------------------------GGHHHHCS--------TTEEEEEEESB-CTTT
T ss_pred ----eEEEeCcH------------------------------------HHHHHHhC--------CCceEEEEecc-ccCc
Confidence 00111110 22444442 35788999997 8999
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCc-eeeeccHHHHHh
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPL-AATLATNAVFDS 710 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pi-gav~~~~~i~~~ 710 (863)
|.+.+ +++|.++|++||+++|+||+|+ +|... +..+.+ .+|++++| |++++| .++ |++++++++++.
T Consensus 179 G~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~--~~d~~~~s~~K~l~~g-~~~~g~l~~~~~~~~~ 248 (416)
T 1qz9_A 179 GYMHD----MQALTALSHECGALAIWDLAHS-AGAVP--VDLHQA--GADYAIGCTYKYLNGG-PGSQAFVWVSPQLCDL 248 (416)
T ss_dssp CBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHH--TCSEEEECSSSTTCCC-TTCCCEEEECTTTTTT
T ss_pred ccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcC--CChhhc--CCCEEEecCcccCCCC-CCCeEEEEECHHHHhc
Confidence 98876 8999999999999999999995 65443 223333 37998874 999887 677 999999998776
Q ss_pred hhcCCc-cce----------e-----eccc-CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHh-
Q 002941 711 FVGDSK-LKA----------L-----LHGH-SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS- 772 (863)
Q Consensus 711 l~~~~~-~~~----------~-----~~~~-T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~- 772 (863)
+..... +.. + .... .++.++.+++++.++|+.+.++. .+++.+..+.+++.+.+.+.+.+.
T Consensus 249 l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~ 327 (416)
T 1qz9_A 249 VPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTD-MASLRRKSLALTDLFIELVEQRCAA 327 (416)
T ss_dssp SCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 643100 000 0 0112 23468889999999999885432 334444445555555445444322
Q ss_pred -cCCCeeEe--cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEEecC-CCCcHHHHHHHHHHHH
Q 002941 773 -SHRTVQRV--VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCG-PCSSPEVCSQLLLKLY 847 (863)
Q Consensus 773 -~~p~v~~v--rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~~pp-l~~t~eeid~~v~~L~ 847 (863)
....+... +..+.++.+.+.+ ...+.+.|.++||++... .+.+|+.++ +.++++++++++++|+
T Consensus 328 ~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~l~~~gi~~~~~~~~~lRis~~~~~~t~~~i~~~~~~l~ 396 (416)
T 1qz9_A 328 HELTLVTPREHAKRGSHVSFEHPE-----------GYAVIQALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILG 396 (416)
T ss_dssp SCCEECSCSSGGGBCSEEEEECTT-----------HHHHHHHHHTTTEECEEETTTEEEEECCTTTCCHHHHHHHHHHHH
T ss_pred CCeEEeCCCCHHHcCCEEEEecCC-----------HHHHHHHHHhCCcEeccCCCCeEEEeCcccCCCHHHHHHHHHHHH
Confidence 22111111 1246677777642 456888899999998764 589999987 5889999999999999
Q ss_pred HHHHHH
Q 002941 848 QRLEEF 853 (863)
Q Consensus 848 ~~l~~l 853 (863)
+++++.
T Consensus 397 ~~~~~~ 402 (416)
T 1qz9_A 397 EILDRK 402 (416)
T ss_dssp HHHHHT
T ss_pred HHHhcc
Confidence 988753
No 105
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.84 E-value=3.8e-20 Score=208.64 Aligned_cols=352 Identities=10% Similarity=-0.018 Sum_probs=211.4
Q ss_pred eEEeeecccccccCCC-CCcHHHHHHHHHHHHhcccccCCCC-CChHHHHHHHHHHhhcCCC-----CCCeEEE--eCCh
Q 002941 400 QQFDACASWWTQGPDA-TLQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGKG-----WASRAYF--SDNG 470 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh-~~~p~V~~Ai~~q~~~~~~~~~~~~-~~~~~~eLae~L~~~~p~~-----~~~~v~f--~~SG 470 (863)
.++|+.+|......|+ ...|.|.+|+.+++.+.... ..| ......+|.++|+++++.. ..++++| ++||
T Consensus 31 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg 108 (412)
T 1ajs_A 31 RKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLN--HEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGG 108 (412)
T ss_dssp TCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCC--CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred CceeeccceecCCCCCccccHHHHHHHHHhhhChhhc--cCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCc
Confidence 7889888775444443 13489999999887331111 112 2233456777777766210 1368999 9999
Q ss_pred hhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCC
Q 002941 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (863)
Q Consensus 471 SeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~ 550 (863)
++|++.+++++ ..+. .|.. +. +.+|++...+||+....+...+...
T Consensus 109 ~~a~~~~~~~~-~~~~--~g~~-~~----------~d~Vl~~~p~y~~~~~~~~~~g~~~-------------------- 154 (412)
T 1ajs_A 109 TGALRIGAEFL-ARWY--NGTN-NK----------DTPVYVSSPTWENHNGVFTTAGFKD-------------------- 154 (412)
T ss_dssp HHHHHHHHHHH-HHHS--SSSS-CC----------CSCEEEEESCCTHHHHHHHHTTCSC--------------------
T ss_pred HHHHHHHHHHH-HHhC--cCcC-CC----------CCeEEEcCCCcHHHHHHHHHcCCce--------------------
Confidence 99999999876 2221 1100 00 1469999999999765443321100
Q ss_pred CcccccCceeeecCc--chhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 002941 551 PTVFMYNSKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (863)
Q Consensus 551 p~~~~~~~~~~~~~P--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPV 628 (863)
+..++.. +.+ ..| .+.+++.+.+ ..++.+..++..|
T Consensus 155 --------~~~~~~~~~~~~---------------------~~d--------~~~l~~~l~~----~~~~~~~v~~~~p- 192 (412)
T 1ajs_A 155 --------IRSYRYWDTEKR---------------------GLD--------LQGFLSDLEN----APEFSIFVLHACA- 192 (412)
T ss_dssp --------EEEEECEETTTT---------------------EEC--------HHHHHHHHHH----SCTTCEEEEESSS-
T ss_pred --------eEEEeeecCCCC---------------------ccC--------HHHHHHHHHh----CCCCcEEEEECCC-
Confidence 0011110 000 011 2445666653 1223334445566
Q ss_pred cccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC---CcchhhhcCCCCc----EEEeccccCC-CCCCcee
Q 002941 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG---VETTADLLGCVPD----IACYGKLLTG-GVIPLAA 700 (863)
Q Consensus 629 iqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG---~~~a~e~~gv~PD----ivt~sKgLgg-G~~Piga 700 (863)
++..|. +++.+++++|.++|++||++||+||++++|++.| .++....+...+| +.++||+++. | +++|+
T Consensus 193 -~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~ 269 (412)
T 1ajs_A 193 -HNPTGT-DPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYN-ERVGN 269 (412)
T ss_dssp -CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGG-GCEEE
T ss_pred -CCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCC-cceEE
Confidence 677775 5688999999999999999999999999998876 4445554432345 4478999997 8 89999
Q ss_pred eec---cHHHHHhhhcCCccceeecccCCC-ccHHHHHHHHHHHHHhc----ChhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 701 TLA---TNAVFDSFVGDSKLKALLHGHSYS-AHALGCAAAAKSIKWFK----DPQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 701 v~~---~~~i~~~l~~~~~~~~~~~~~T~~-~~pla~AAalAaL~~l~----~~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
+++ ++++++.+...- . ..+..++. .++++++++.++|+..+ -++..+++.+..+..++.+.+.+.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 344 (412)
T 1ajs_A 270 LTVVAKEPDSILRVLSQM--Q-KIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEAL-- 344 (412)
T ss_dssp EEEECSSHHHHHHHHHHH--H-HHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred EEEecCCHHHHHHHHHHH--H-HHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 999 887554432100 0 01445666 49999999999987532 01234455555555555554443321
Q ss_pred cCC-CeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 773 SHR-TVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 773 ~~p-~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
..| .+..+.. .|++..+.+. ...+...+.++||++.+. +|+... .++++++++++++|++++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gv~v~~~---~Ris~~-~~~~~~i~~~~~~l~~~l 408 (412)
T 1ajs_A 345 KTPGTWNHITDQIGMFSFTGLN------------PKQVEYLINQKHIYLLPS---GRINMC-GLTTKNLDYVATSIHEAV 408 (412)
T ss_dssp TCSSCCHHHHHCCSSEEECCCC------------HHHHHHHHHTTCEECCTT---SEEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred CCCCCeeEEcCCCceEEEeCCC------------HHHHHHHHHhCCEEecCC---cEEEee-eCCHHHHHHHHHHHHHHH
Confidence 101 1222223 3444443321 233455566899999874 477654 358999999999999988
Q ss_pred HHH
Q 002941 851 EEF 853 (863)
Q Consensus 851 ~~l 853 (863)
+++
T Consensus 409 ~~~ 411 (412)
T 1ajs_A 409 TKI 411 (412)
T ss_dssp HHC
T ss_pred Hhc
Confidence 653
No 106
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.84 E-value=2.9e-19 Score=196.94 Aligned_cols=326 Identities=11% Similarity=0.018 Sum_probs=208.1
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCe
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASR 463 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~ 463 (863)
++|.++++.+|+ +++|+.++. +.++ .+|++.+|+.+++..... +.++...+|.++|+++++.. .+.
T Consensus 4 ~~g~~~~~~~g~----~~id~~~~~--~~~~--~~~~v~~a~~~~~~~~~~-----y~~~~~~~lr~~la~~~~~~-~~~ 69 (350)
T 3fkd_A 4 GHGDEGITPLSS----EIVNFSTTV--WTDG--DKDHLEKHLVENLNCIRH-----YPEPDAGTLRQMLAKRNSVD-NNA 69 (350)
T ss_dssp ----------------CCEECSCCS--CCCS--CCHHHHHHHHHTGGGGGS-----CCCTTCHHHHHHHHHHTTCC-GGG
T ss_pred cccchHhhhccc----cEEEccCCC--CCCC--CCHHHHHHHHHhHhHHhc-----CCCCcHHHHHHHHHHHhCcC-HHH
Confidence 567789999998 999999754 4455 579999999988854322 22333357889999988743 468
Q ss_pred EEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccC
Q 002941 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSG 543 (863)
Q Consensus 464 v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~ 543 (863)
++|+++|++|++.+++... | .+||+...+|++....+...+.
T Consensus 70 i~~t~g~~~al~~~~~~l~-------g----------------d~Vi~~~p~~~~~~~~~~~~g~--------------- 111 (350)
T 3fkd_A 70 ILVTNGPTAAFYQIAQAFR-------G----------------SRSLIAIPSFAEYEDACRMYEH--------------- 111 (350)
T ss_dssp EEEESHHHHHHHHHHHHTT-------T----------------CEEEEEESCCHHHHHHHHHTTC---------------
T ss_pred EEEcCCHHHHHHHHHHHHC-------C----------------CEEEEeCCCcHHHHHHHHHcCC---------------
Confidence 9999999999999998761 2 5699999999886533322110
Q ss_pred CCcccCCCcccccCceeeecC-cchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 002941 544 RGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622 (863)
Q Consensus 544 ~~~~~~~p~~~~~~~~~~~~~-P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAA 622 (863)
.+..++. +. .+ .+. ..++.+
T Consensus 112 --------------~~~~v~~~~~------------------------~~--------------~~~-------~~~~~~ 132 (350)
T 3fkd_A 112 --------------EVCFYPSNED------------------------IG--------------EAD-------FSNMDF 132 (350)
T ss_dssp --------------EEEEEETTSC------------------------GG--------------GSC-------CTTCSE
T ss_pred --------------eEEEEecCCc------------------------cc--------------cCc-------cCCCCE
Confidence 0011111 10 00 010 012334
Q ss_pred EEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch--hhhcCCCCcEEEeccccC-CCCCCce
Q 002941 623 LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--ADLLGCVPDIACYGKLLT-GGVIPLA 699 (863)
Q Consensus 623 vIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a--~e~~gv~PDivt~sKgLg-gG~~Pig 699 (863)
|+++.. ++..|.+.+ .+.+++|.++|++ .++|+||++++|+..|.... ...++....+.+++|.++ .| +++|
T Consensus 133 v~i~~p-~nptG~~~~-~~~l~~l~~~~~~--~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~r~G 207 (350)
T 3fkd_A 133 CWLCNP-NNPDGRLLQ-RTEILRLLNDHPD--TTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPG-LRIG 207 (350)
T ss_dssp EEEESS-CTTTCCCCC-HHHHHHHHHHCTT--SEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGG-GCCE
T ss_pred EEEeCC-CCCcCCCCC-HHHHHHHHHhCCC--CEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcc-hheE
Confidence 444443 788897665 4445555555544 49999999999887765322 222222233447899998 77 8999
Q ss_pred eeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE
Q 002941 700 ATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR 779 (863)
Q Consensus 700 av~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~ 779 (863)
++++++++++.+... ..+++.++++++++.++|+..+ ++.+++++.. ..++.+ .+.+.++|.+..
T Consensus 208 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~-~~~~~l----~~~L~~~~~~~~ 272 (350)
T 3fkd_A 208 YIVANKDFMKRVAAF--------STPWAVNALAIEAAKFILIHPA--QFTLPIRKWQ-RNTVDF----ITALNRLDGVEV 272 (350)
T ss_dssp EEECCHHHHHHHHTT--------CCTTCSCHHHHHHHHHHHHCTT--TTCCCHHHHH-HHHHHH----HHHHHHSTTEEE
T ss_pred eEEeCHHHHHHHHHh--------CCCCCCCHHHHHHHHHHHhCHH--HHHHHHHHHH-HHHHHH----HHHHhcCCCcEE
Confidence 999999999988752 2467789999999999988432 2444444443 344433 334455666666
Q ss_pred ecccceEEEEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 780 VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 780 vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
..+.|.++.+.+.... ..++.+.|.+ +||++++. .+.+|++. .+++++++++++|++.++
T Consensus 273 ~~~~~~~~~~~~~~~~---------~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~---~~~~~~~~l~~al~~~~~ 340 (350)
T 3fkd_A 273 HPSGTTFFLLRLKKGT---------AAELKKYMLEEYNMLIRDASNFRGLDESYVRITT---QRPAQNQLFIKALETFLE 340 (350)
T ss_dssp CCCSSSEEEEEESSSC---------HHHHHHHHHHTTCEECEECTTSTTCCTTEEEEEC---CCHHHHHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCC---------HHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEc---CCHHHHHHHHHHHHHHHH
Confidence 6778888888876432 5678889998 99999874 36899973 488889999998887765
Q ss_pred H
Q 002941 852 E 852 (863)
Q Consensus 852 ~ 852 (863)
+
T Consensus 341 ~ 341 (350)
T 3fkd_A 341 K 341 (350)
T ss_dssp C
T ss_pred H
Confidence 4
No 107
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.84 E-value=1.8e-19 Score=200.31 Aligned_cols=333 Identities=14% Similarity=0.030 Sum_probs=202.3
Q ss_pred CcHHHHHHHHHHHHhcccccCC-CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHh--hccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFP-ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF--DHEVLV 493 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~-~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~--~~G~~t 493 (863)
.+|++.+|+.+++.+....... ....+...+++++|+++++.+ .+.++|++||++|++.|++.++..+.. ..|...
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~ 120 (397)
T 3f9t_A 42 VLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNK-DAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSK 120 (397)
T ss_dssp CCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCT-TCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCC-CCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 4799999999988763221100 012445668889999988754 468899999999999999998432111 111101
Q ss_pred cccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhc
Q 002941 494 DFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (863)
Q Consensus 494 gr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~ 573 (863)
+ ...+|++...+|++....+ ...|.. +..++....+
T Consensus 121 ~----------~gd~vl~~~~~~~~~~~~~-~~~g~~----------------------------~~~v~~~~~~----- 156 (397)
T 3f9t_A 121 N----------EHPKIIVPITAHFSFEKGR-EMMDLE----------------------------YIYAPIKEDY----- 156 (397)
T ss_dssp C----------SSCEEEEETTCCTHHHHHH-HHHTCE----------------------------EEEECBCTTS-----
T ss_pred C----------CCeEEEECCcchhHHHHHH-HHcCce----------------------------eEEEeeCCCC-----
Confidence 1 1267888888877743322 221100 1111111100
Q ss_pred cccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc
Q 002941 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (863)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~ 653 (863)
.-| .+.+++.+++ .++.+|++++. ++..|.+.+ +++|.++|++|
T Consensus 157 ----------------~~d--------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~ 200 (397)
T 3f9t_A 157 ----------------TID--------EKFVKDAVED-------YDVDGIIGIAG-TTELGTIDN----IEELSKIAKEN 200 (397)
T ss_dssp ----------------SBC--------HHHHHHHHHH-------SCCCEEEEEBS-CTTTCCBCC----HHHHHHHHHHH
T ss_pred ----------------cCC--------HHHHHHHHhh-------cCCeEEEEECC-CCCCCCCCC----HHHHHHHHHHh
Confidence 011 2456666653 14556666665 788898765 99999999999
Q ss_pred CCeEEEeccccccc--ccCC---------cchhhhcCCCCcEEEeccccCCCCCCceeeeccHH-HHHhhhcCCcc----
Q 002941 654 KIPVIFDEVFTGFW--RLGV---------ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNA-VFDSFVGDSKL---- 717 (863)
Q Consensus 654 gilLI~DEV~TGfG--RtG~---------~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~-i~~~l~~~~~~---- 717 (863)
|+++|+||+|+++. .+|. .+.++. ++...+.+++|.+++| .++|+++++++ +.+.+......
T Consensus 201 ~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~ 278 (397)
T 3f9t_A 201 NIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCP-IPSGGILFKDIGYKRYLDVDAPYLTET 278 (397)
T ss_dssp TCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCC-SSCEEEEESSGGGGGGTCEECTTSSSS
T ss_pred CCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCC-CCceEEEEeCHHHHHhhccCCccccCC
Confidence 99999999998743 3443 334444 5544455678998888 69999988655 44443211100
Q ss_pred -ceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCc
Q 002941 718 -KALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC 796 (863)
Q Consensus 718 -~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~ 796 (863)
....++.+.+.++++++++++.+... . .++..++...+++.+.+.+.+. ..+.+.. ..+.++.+.+.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~a~~~~~~~~---~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~--~~~~~~~~~~~~--- 347 (397)
T 3f9t_A 279 RQATILGTRVGFGGACTYAVLRYLGRE---G-QRKIVNECMENTLYLYKKLKEN--NFKPVIE--PILNIVAIEDED--- 347 (397)
T ss_dssp EECSSCSSCCSHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHT--TCCBSSC--CSSSEEEEECTT---
T ss_pred CccccccccccchHHHHHHHHHHHhHH---H-HHHHHHHHHHHHHHHHHHHHHC--CCEEEcC--CCccEEEEEeCC---
Confidence 00111333445677777777665432 1 2233333334444443343332 2332222 345566555431
Q ss_pred CCCCchHHHHHHHHHHHHCCcEEEecC--CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 797 NAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 797 ~~~~~~~~~~~l~~~l~e~GV~~~p~g--~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
...+.+.|.++||++.+.. +.+|+.++..++++++++++++|+++++
T Consensus 348 --------~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 348 --------YKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp --------HHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred --------HHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 4578899999999999875 8999999888999999999999998764
No 108
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.84 E-value=5.4e-20 Score=205.89 Aligned_cols=333 Identities=13% Similarity=0.058 Sum_probs=203.3
Q ss_pred eEEeeecccccccCC--CCCcHHHHHHHHHHHHhcccccCCCC-CChHHHHHHHHHHhhcCC-C----CCCeEEE--eCC
Q 002941 400 QQFDACASWWTQGPD--ATLQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGK-G----WASRAYF--SDN 469 (863)
Q Consensus 400 ~ylD~~sg~~~~~lG--h~~~p~V~~Ai~~q~~~~~~~~~~~~-~~~~~~eLae~L~~~~p~-~----~~~~v~f--~~S 469 (863)
.++|+.+|.+.++.| + .+|.|.+|+.+++++... ..+ ......+|.++|++++.. + ..++++| +++
T Consensus 27 ~~i~l~~g~~~~~~~~~~-~~~~v~~a~~~~~~~~~~---~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g 102 (396)
T 2q7w_A 27 GKINLGIGVYKDETGKTP-VLTSVKKAEQYLLENETT---KNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPG 102 (396)
T ss_dssp -CEESSCCSCCCTTSCCC-CCHHHHHHHHHHHHHCCC---CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESH
T ss_pred CceecccccccCCCCCcc-CcHHHHHHHHhhcCcccc---cCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEeccc
Confidence 789999998766655 3 579999999998875311 112 223345666666665511 0 0257888 999
Q ss_pred hhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccC
Q 002941 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (863)
Q Consensus 470 GSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~ 549 (863)
|++|++.+++++ ..+. .| .+|++...+||+....+...+..
T Consensus 103 ~~~a~~~~~~~~-~~~~------~g------------d~Vl~~~p~y~~~~~~~~~~g~~-------------------- 143 (396)
T 2q7w_A 103 GTGALRVAADFL-AKNT------SV------------KRVWVSNPSWPNHKSVFNSAGLE-------------------- 143 (396)
T ss_dssp HHHHHHHHHHHH-HHHS------CC------------CEEEEEESCCTHHHHHHHHTTCE--------------------
T ss_pred chhhHHHHHHHH-HHhC------CC------------CEEEEcCCCchhHHHHHHHcCCc--------------------
Confidence 999999999987 3221 12 57999999999976544332110
Q ss_pred CCcccccCceeeecCc--chhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE-Ec
Q 002941 550 PPTVFMYNSKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI-IE 626 (863)
Q Consensus 550 ~p~~~~~~~~~~~~~P--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvI-vE 626 (863)
+..++.. +.+ .-| .+.+++.+.+ .+.+..+++ ..
T Consensus 144 ---------~~~~~~~~~~~~---------------------~~d--------~~~l~~~l~~-----~~~~~~~v~~~~ 180 (396)
T 2q7w_A 144 ---------VREYAYYDAENH---------------------TLD--------FDALINSLNE-----AQAGDVVLFHGC 180 (396)
T ss_dssp ---------EEEEECEETTTT---------------------EEC--------HHHHHHHHTT-----CCTTCEEEEECS
T ss_pred ---------eEEEecccCCCC---------------------CcC--------HHHHHHHHHh-----CCCCCEEEEeCC
Confidence 0011110 000 011 2456666642 122234444 45
Q ss_pred cccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC--CcchhhhcCCCCc----EEEeccccC-CCCCCce
Q 002941 627 PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VETTADLLGCVPD----IACYGKLLT-GGVIPLA 699 (863)
Q Consensus 627 PViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG--~~~a~e~~gv~PD----ivt~sKgLg-gG~~Pig 699 (863)
| ++..|. +++.+++++|.++|++||+++|+||++++|++.| .++....+...+| +.+++|+++ .| +++|
T Consensus 181 p--~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG 256 (396)
T 2q7w_A 181 C--HNPTGI-DPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYN-ERVG 256 (396)
T ss_dssp S--CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGG-GCCE
T ss_pred C--CCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccc-cccc
Confidence 5 788886 5678999999999999999999999999997654 3344443433333 347899998 78 8999
Q ss_pred eeec---cHH----HHHhhhcCCccceeecccCCC-ccHHHHHHHHHHHHHhc-C---hhhHHhHHHHHHHHHHHHHHHH
Q 002941 700 ATLA---TNA----VFDSFVGDSKLKALLHGHSYS-AHALGCAAAAKSIKWFK-D---PQTNHNIIPERRILRELWDLEL 767 (863)
Q Consensus 700 av~~---~~~----i~~~l~~~~~~~~~~~~~T~~-~~pla~AAalAaL~~l~-~---~~l~~~l~~~~~~l~~~l~~~l 767 (863)
++++ +++ +++.+.. .+..++. .++++++++.++|+... . .+..+++.+..+..++.+.+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~- 328 (396)
T 2q7w_A 257 ACTLVAADSETVDRAFSQMKA-------AIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNT- 328 (396)
T ss_dssp EEEEECSSHHHHHHHHHHHHH-------HHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHH-
T ss_pred eEEEEcCCHHHHHHHHHHHHH-------HHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9986 564 4444432 1223444 49999999988886420 0 122333344444444444333
Q ss_pred HHHHhcCC---CeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHH
Q 002941 768 IQQISSHR---TVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 768 ~~~~~~~p---~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v 843 (863)
+.+.+ .+..+. ..|+++.+.+. ...+...+.++||++.+. +|+.++. .+++++++++
T Consensus 329 ---L~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gv~v~~~---~Ris~~~-~~~e~i~~~~ 389 (396)
T 2q7w_A 329 ---LQEKGANRDFSFIIKQNGMFSFSGLT------------KEQVLRLREEFGVYAVAS---GRVNVAG-MTPDNMAPLC 389 (396)
T ss_dssp ---HHHTTCCSCCTHHHHCCSSEEECCCC------------HHHHHHHHHHHCEECCTT---CEEEGGG-CCTTTHHHHH
T ss_pred ---HHhcCCCCCcceecCCCceEEEecCC------------HHHHHHHHHhcCeeecCC---ceEEEee-cCHHHHHHHH
Confidence 33332 122122 33555444331 134566677899999874 5787653 4899999999
Q ss_pred HHHHHH
Q 002941 844 LKLYQR 849 (863)
Q Consensus 844 ~~L~~~ 849 (863)
++|+++
T Consensus 390 ~~l~~~ 395 (396)
T 2q7w_A 390 EAIVAV 395 (396)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999875
No 109
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.84 E-value=2.5e-19 Score=199.06 Aligned_cols=328 Identities=11% Similarity=0.022 Sum_probs=212.3
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~ 496 (863)
.+|++.+|+.+++.. +.. ....+...+++++|+++++.+..+.++|++||++|++.+++.+++ .|
T Consensus 31 ~~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~---------~g-- 95 (386)
T 2dr1_A 31 CFPEVLEIMKVQMFS--HRS--KEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVS---------KG-- 95 (386)
T ss_dssp CCHHHHHHTTSCCCC--TTS--HHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSC---------TT--
T ss_pred CcHHHHHHHhccccc--ccC--HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhc---------CC--
Confidence 578888888776542 110 012456788999999988742124699999999999999987621 12
Q ss_pred CCCccccccccEEEEecCCCccCccccc-eecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccc
Q 002941 497 GKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (863)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~gal-s~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (863)
.+|++...+|||.+.... ...|. .+..++.+..+
T Consensus 96 ----------d~vl~~~~~~~~~~~~~~~~~~g~----------------------------~~~~v~~~~~~------- 130 (386)
T 2dr1_A 96 ----------GKVLVTIIGAFGKRYKEVVESNGR----------------------------KAVVLEYEPGK------- 130 (386)
T ss_dssp ----------CEEEEEESSHHHHHHHHHHHHTTC----------------------------EEEEEECCTTC-------
T ss_pred ----------CeEEEEcCCchhHHHHHHHHHhCC----------------------------ceEEEecCCCC-------
Confidence 579999999998422111 11110 00111111000
Q ss_pred cccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCC
Q 002941 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (863)
Q Consensus 576 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gi 655 (863)
..| .+.+++.+++ ..++.+|++++. ++..|.+.+ +++|.++|++||+
T Consensus 131 --------------~~d--------~~~l~~~l~~------~~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~ 177 (386)
T 2dr1_A 131 --------------AVK--------PEDLDDALRK------NPDVEAVTITYN-ETSTGVLNP----LPELAKVAKEHDK 177 (386)
T ss_dssp --------------CCC--------HHHHHHHHHH------CTTCCEEEEESE-ETTTTEECC----HHHHHHHHHHTTC
T ss_pred --------------CCC--------HHHHHHHHhc------CCCCcEEEEEee-cCCcchhCC----HHHHHHHHHHcCC
Confidence 011 2456666642 135678888886 899998875 8999999999999
Q ss_pred eEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCc----------ccee--e
Q 002941 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSK----------LKAL--L 721 (863)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~----------~~~~--~ 721 (863)
++|+||+++ +|... +....+ .+|++++| |+++++ .++|++++++++++.+..... .... .
T Consensus 178 ~li~D~a~~-~~~~~--~~~~~~--~~di~~~s~sK~~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (386)
T 2dr1_A 178 LVFVDAVSA-MGGAD--IKFDKW--GLDVVFSSSQKAFGVP-PGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEK 251 (386)
T ss_dssp EEEEECTTT-BTTBC--CCTTTT--TCSEEEEETTSTTCCC-SSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHH
T ss_pred eEEEEcccc-ccCcc--cccccc--CCcEEEEeccccccCC-CceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccC
Confidence 999999995 44332 222222 46998776 999876 468999999999887642100 0001 0
Q ss_pred cccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc--cceEEEEEEccCCcCCC
Q 002941 722 HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA--LGTLCAIELQAAGCNAG 799 (863)
Q Consensus 722 ~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg--~Gl~~~iel~~~~~~~~ 799 (863)
...+++.++++++++.++|+.+++.+..+++.+..+.+++.+.+.+.+. ..+.+.. .+ .|.++.+.+....
T Consensus 252 ~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~-~~~~~~~~~~~~~~~~~---- 324 (386)
T 2dr1_A 252 ESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI--GLDILAE-PGHESPTITAVLTPPGI---- 324 (386)
T ss_dssp SSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT--TCCBSSC-TTCBCSSEEEEECCTTC----
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc--CCeeCcC-ccccCCceEEEEcCCCC----
Confidence 2345678999999999999987543112333444444444443343332 2222111 11 5778888875321
Q ss_pred CchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 800 YGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 800 ~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
....+.+.|.++||++.+. ++.+|+.++..++++++++++++|+++++++.
T Consensus 325 ----~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 325 ----KGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINELK 380 (386)
T ss_dssp ----CHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 1567889999999999874 37999998888999999999999999988764
No 110
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.83 E-value=2.3e-19 Score=199.05 Aligned_cols=315 Identities=13% Similarity=0.080 Sum_probs=206.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
+++|+.++. +.+|+ +|.+ |+ ... ..|+.+...+|.++|+++++.+ .++++|+++|++|++.+++
T Consensus 30 ~~i~l~~~~--~~~~~--~~~v--a~----~~~-----~~Y~~~~~~~lr~~la~~~~~~-~~~v~~~~G~~~ai~~~~~ 93 (356)
T 1fg7_A 30 GDVWLNANE--YPTAV--EFQL--TQ----QTL-----NRYPECQPKAVIENYAQYAGVK-PEQVLVSRGADEGIELLIR 93 (356)
T ss_dssp CSEECSSCC--CSSCC--CCCC--CC----CCT-----TSCCCSSCHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHHH
T ss_pred ceEEeeCCC--CCCCC--CHhH--hh----hhh-----ccCCCccHHHHHHHHHHHhCCC-hHHEEEcCCHHHHHHHHHH
Confidence 678888764 57886 4665 21 111 1233333578889999888743 4689999999999999998
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
...+ +|+ .+|++...+||+....+...+. . +
T Consensus 94 ~~~~---------~g~-----------d~Vl~~~p~~~~~~~~~~~~g~-~----------------------------~ 124 (356)
T 1fg7_A 94 AFCE---------PGK-----------DAILYCPPTYGMYSVSAETIGV-E----------------------------C 124 (356)
T ss_dssp HHCC---------TTT-----------CEEEECSSSCTHHHHHHHHHTC-E----------------------------E
T ss_pred HHhC---------CCC-----------CEEEEeCCChHHHHHHHHHcCC-E----------------------------E
Confidence 7621 121 5799999999997654433211 0 0
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..++....+ ..| .+.+ ++.+ . ++.+|++... ++..|.+ .+
T Consensus 125 ~~v~~~~~~---------------------~~d--------~~~l----~~~i---~--~~~~v~l~~p-~nptG~~-~~ 164 (356)
T 1fg7_A 125 RTVPTLDNW---------------------QLD--------LQGI----SDKL---D--GVKVVYVCSP-NNPTGQL-IN 164 (356)
T ss_dssp EECCCCTTS---------------------CCC--------HHHH----HTSC---T--TEEEEEEESS-CTTTCCC-CC
T ss_pred EEeeCCCCC---------------------CCC--------HHHH----HHHh---c--CCCEEEEeCC-CCCCCCC-CC
Confidence 001110000 011 1223 2221 1 3455555554 8888865 57
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchh-hhcCCCCcEEEeccccC-CCCCCceeeeccHHHHHhhhcCCcc
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKL 717 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~-e~~gv~PDivt~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~~ 717 (863)
.+.+++|.++|+ ||+++|+||+|++|++....... +.++....+.+++|.++ .| +++|++++++++++.+..
T Consensus 165 ~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~---- 238 (356)
T 1fg7_A 165 PQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAG-LRCGFTLANEEVINLLMK---- 238 (356)
T ss_dssp HHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGG-GCCEEEEECHHHHHHHHH----
T ss_pred HHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCch-hhhEEEEeCHHHHHHHHH----
Confidence 899999999999 99999999999988643333332 33333334558899998 78 899999999999988864
Q ss_pred ceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe-eEecccceEEEEEEccCCc
Q 002941 718 KALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV-QRVVALGTLCAIELQAAGC 796 (863)
Q Consensus 718 ~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v-~~vrg~Gl~~~iel~~~~~ 796 (863)
...+|+.|+++++++.++|+.... ++.++..+..+..++.+.+. +.+++.+ ....+.|.++.+++. +
T Consensus 239 ----~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~----L~~~~~~~~~~~~~~~~~~~~~~--~- 306 (356)
T 1fg7_A 239 ----VIAPYPLSTPVADIAAQALSPQGI-VAMRERVAQIIAEREYLIAA----LKEIPCVEQVFDSETNYILARFK--A- 306 (356)
T ss_dssp ----HSCSSCSCHHHHHHHHHHTSHHHH-HHHHHHHHHHHHHHHHHHHH----HHHSTTEEEECCCSSSEEEEEET--T-
T ss_pred ----hcCCCCCCHHHHHHHHHHhcCccH-HHHHHHHHHHHHHHHHHHHH----HHhCCCceEECCCCCeEEEEECC--C-
Confidence 234567899999999888863210 12455555555555555433 3445543 334567888888875 2
Q ss_pred CCCCchHHHHHHHHHHHHCCcEEEecC------CEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 797 NAGYGSLYAASLLKKLREDGVYMRPLG------NVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 797 ~~~~~~~~~~~l~~~l~e~GV~~~p~g------~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
...+.+.|.++||++++.| +.+|+++. +++++++++++|++
T Consensus 307 --------~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~---~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 307 --------SSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG---TREESQRVIDALRA 353 (356)
T ss_dssp --------HHHHHHHHHHTTEECEECTTSTTCTTEEEEECC---CHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC---CHHHHHHHHHHHHh
Confidence 4568888999999999832 58999854 68999999988865
No 111
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.83 E-value=4.9e-19 Score=199.86 Aligned_cols=339 Identities=12% Similarity=0.035 Sum_probs=215.1
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHH--hc-ccccC-C----CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChh
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAA--RF-GHVMF-P----ENVYEPALECAELLLQGVGKGWASRAYFSDNGS 471 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~--~~-~~~~~-~----~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGS 471 (863)
-|||+.++ |+ .+|+|.+|+.+++. +. +.... . ....+...++.++|+++++.+ .+.++|++||+
T Consensus 24 iyld~~~~------~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggt 95 (423)
T 3lvm_A 24 IYLDYSAT------TP-VDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGAD-PREIVFTSGAT 95 (423)
T ss_dssp EECBTTTC------CC-CCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESSHH
T ss_pred EeecCCCc------CC-CCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCC-CCeEEEeCChH
Confidence 68886542 44 68999999999887 32 21110 0 011245678999999998753 45899999999
Q ss_pred hHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCC
Q 002941 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (863)
Q Consensus 472 eAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p 551 (863)
+|++.|++.+.+.+ . ++ ..+|++...+||+.......+.. ...
T Consensus 96 ~a~~~a~~~l~~~~-~------~~----------gd~Vl~~~~~~~~~~~~~~~~~~-~g~------------------- 138 (423)
T 3lvm_A 96 ESDNLAIKGAANFY-Q------KK----------GKHIITSKTEHKAVLDTCRQLER-EGF------------------- 138 (423)
T ss_dssp HHHHHHHHHHHHHH-T------TT----------CCEEEEETTSCHHHHHHHHHHHH-TTC-------------------
T ss_pred HHHHHHHHHHHHhh-c------cC----------CCEEEECCccchHHHHHHHHHHH-cCC-------------------
Confidence 99999999874322 1 10 25799999999886543322210 000
Q ss_pred cccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 002941 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (863)
Q Consensus 552 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg 631 (863)
.+..++....+ .-| .+.+++.+. +++++|+++++ ++
T Consensus 139 ------~~~~v~~~~~~---------------------~~d--------~~~l~~~i~--------~~~~~v~~~~~-~n 174 (423)
T 3lvm_A 139 ------EVTYLAPQRNG---------------------IID--------LKELEAAMR--------DDTILVSIMHV-NN 174 (423)
T ss_dssp ------EEEEECCCTTS---------------------CCC--------HHHHHHHCC--------TTEEEEECCSB-CT
T ss_pred ------EEEEeccCCCC---------------------ccC--------HHHHHHhcC--------CCcEEEEEeCC-CC
Confidence 00111111000 011 244555553 35789999997 89
Q ss_pred CCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHH
Q 002941 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFD 709 (863)
Q Consensus 632 ~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~ 709 (863)
..|.+.+ +++|.++|++||++||+||+++ +|.. ........+|++++| |.+ |+ .++|++++++++.+
T Consensus 175 ptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~----~~~~~~~~~di~~~s~sK~~-g~-~g~G~~~~~~~~~~ 243 (423)
T 3lvm_A 175 EIGVVQD----IAAIGEMCRARGIIYHVDATQS-VGKL----PIDLSQLKVDLMSFSGHKIY-GP-KGIGALYVRRKPRV 243 (423)
T ss_dssp TTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTS----CCCTTTSCCSEEEEESTTTT-SC-SSCEEEEECBTTBC
T ss_pred CCccccC----HHHHHHHHHHcCCEEEEEhhhh-cCCC----CcChhhcCCCEEEechHHhc-CC-CCeEEEEEeccccC
Confidence 9998877 8999999999999999999985 3322 122223458998776 954 44 56999999987766
Q ss_pred hhhcCCcccee-ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc----cc
Q 002941 710 SFVGDSKLKAL-LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA----LG 784 (863)
Q Consensus 710 ~l~~~~~~~~~-~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg----~G 784 (863)
.+......... ....+.+.++.+++++.++++.+++. .+++.++.+.+++.+. +.+.+.|.+.-+.. .+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~~l~----~~L~~~~~~~~~~~~~~~~~ 317 (423)
T 3lvm_A 244 RIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEE--MATEMERLRGLRNRLW----NGIKDIEEVYLNGDLEHGAP 317 (423)
T ss_dssp CCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH----HHHTTSTTEEEESCSTTBCT
T ss_pred CCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH----HHHhcCCCEEEeCCccccCC
Confidence 55431000000 01223456788888888999877542 3455555555555443 33455655433322 24
Q ss_pred eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec------------------------CCEEEEecCCCCcHHHHH
Q 002941 785 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 785 l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~------------------------g~~lr~~ppl~~t~eeid 840 (863)
.++.+.+.... ...+.+.|.+ |.+.+. ++.+|+.++..+++++++
T Consensus 318 ~~~~~~~~~~~---------~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~ 386 (423)
T 3lvm_A 318 NILNVSFNYVE---------GESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEID 386 (423)
T ss_dssp TEEEEEETTSC---------HHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHH
T ss_pred CeEEEEeCCCC---------HHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHH
Confidence 57777774322 4456666666 655542 378999999889999999
Q ss_pred HHHHHHHHHHHHHHH
Q 002941 841 QLLLKLYQRLEEFDK 855 (863)
Q Consensus 841 ~~v~~L~~~l~~l~~ 855 (863)
+++++|+++++++.+
T Consensus 387 ~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 387 YTIELVRKSIGRLRD 401 (423)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999988765
No 112
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.82 E-value=1.2e-19 Score=202.01 Aligned_cols=327 Identities=12% Similarity=0.037 Sum_probs=209.7
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~ 496 (863)
-+|+|.+|+.+++.. +.. ....+...++.++|+++++....+.++|++||++|++.+++.+++ .|
T Consensus 34 ~~~~v~~a~~~~~~~--~~~--~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~---------~g-- 98 (393)
T 3kgw_A 34 LAPRVLAAGSLRMIG--HMQ--KEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLE---------PG-- 98 (393)
T ss_dssp CCHHHHHHTTCCCCC--TTS--HHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCC---------TT--
T ss_pred CCHHHHHHhcccccC--ccc--HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCC---------CC--
Confidence 478888888765321 111 012345678899999988754223599999999999999987621 12
Q ss_pred CCCccccccccEEEEecCCCccCccccc-eecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccc
Q 002941 497 GKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (863)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~gal-s~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (863)
.+||+...+|||.....+ ...|. .+..++.+...
T Consensus 99 ----------d~vl~~~~~~~~~~~~~~~~~~g~----------------------------~~~~~~~~~~~------- 133 (393)
T 3kgw_A 99 ----------DSFLTGTNGIWGMRAAEIADRIGA----------------------------RVHQMIKKPGE------- 133 (393)
T ss_dssp ----------CEEEEEESSHHHHHHHHHHHHTTC----------------------------EEEEEECCTTC-------
T ss_pred ----------CEEEEEeCCchhHHHHHHHHHcCC----------------------------ceEEEeCCCCC-------
Confidence 578888888886532211 11110 00111111000
Q ss_pred cccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCC
Q 002941 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (863)
Q Consensus 576 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gi 655 (863)
..| .+.+++.+.+ .++.+|++++. ++..|.+.+ +++|+++|++||+
T Consensus 134 --------------~~d--------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~ 179 (393)
T 3kgw_A 134 --------------HYT--------LQEVEEGLAQ-------HKPVLLFLVHG-ESSTGVVQP----LDGFGELCHRYQC 179 (393)
T ss_dssp --------------CCC--------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHTTC
T ss_pred --------------CCC--------HHHHHHHHhh-------CCCcEEEEecc-CCcchhhcc----HHHHHHHHHHcCC
Confidence 011 2456666642 24678888887 999998776 8899999999999
Q ss_pred eEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCc-ccee------------
Q 002941 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSK-LKAL------------ 720 (863)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~-~~~~------------ 720 (863)
+||+||+++ +| +..+..+.++ +|+++++ |+++|+ .++|++++++++++.+..... ...+
T Consensus 180 ~li~De~~~-~g--~~~~~~~~~~--~d~~~~s~sK~~~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (393)
T 3kgw_A 180 LLLVDSVAS-LG--GVPIYMDQQG--IDIMYSSSQKVLNAP-PGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWG 253 (393)
T ss_dssp EEEEECTTT-TT--TSCCCTTTTT--CCEEEEESSSTTCCC-SSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTT
T ss_pred EEEEECCcc-cc--CcccchhhcC--CCEEEecCcccccCC-CceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhh
Confidence 999999995 43 2233344433 5887665 999887 689999999999998864210 0000
Q ss_pred ----ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe-eE-ecccceEEEEEEccC
Q 002941 721 ----LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV-QR-VVALGTLCAIELQAA 794 (863)
Q Consensus 721 ----~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v-~~-vrg~Gl~~~iel~~~ 794 (863)
....+++.++.+++++.++++.+++.. .+++.+..+.+++.+.+.+.+. ....+ .+ ....+.++.+.+.+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~ 330 (393)
T 3kgw_A 254 CEGETRVIHHTTPVTSLYCLRESLALIAEQG-LENCWRRHREATAHLHKHLQEM--GLKFFVKDPEIRLPTITTVTVPAG 330 (393)
T ss_dssp CSSSCCCCCCCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHT--TCCBSSSSGGGBCSSEEEEECCTT
T ss_pred hccccCCCCCCCCHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHc--CCeeccCChhhcCCeEEEEeCCCC
Confidence 012245568889999999999875432 2344444455555444443332 22211 11 123356777777532
Q ss_pred CcCCCCchHHHHHHHHHHHHC-CcEEEec-----CCEEEEec-CCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMC-GPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-----g~~lr~~p-pl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
. ...++.+.|+++ ||++++. ++.+|+.+ +..++++++++++++|+++++++.
T Consensus 331 ~--------~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 389 (393)
T 3kgw_A 331 Y--------NWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHCP 389 (393)
T ss_dssp B--------CHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred C--------CHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhh
Confidence 1 256788899888 9999863 47999997 666799999999999999987653
No 113
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.82 E-value=1.7e-19 Score=201.88 Aligned_cols=341 Identities=14% Similarity=0.057 Sum_probs=210.2
Q ss_pred eEEeeecccccccCC--CCCcHHHHHHHHHHHHhcccccCCCCC-ChHHHHHHHHHHhhc-CCC-CCCeEEE--eCChhh
Q 002941 400 QQFDACASWWTQGPD--ATLQIELARDMGYTAARFGHVMFPENV-YEPALECAELLLQGV-GKG-WASRAYF--SDNGST 472 (863)
Q Consensus 400 ~ylD~~sg~~~~~lG--h~~~p~V~~Ai~~q~~~~~~~~~~~~~-~~~~~eLae~L~~~~-p~~-~~~~v~f--~~SGSe 472 (863)
.++|+.+|...+..| + .+|.|.+|+.+++++... ..+. .....+|.++|++++ +.+ ..++++| +++|++
T Consensus 27 ~~i~l~~g~~~~~~~~~~-~~~~v~~a~~~~~~~~~~---~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~ 102 (394)
T 2ay1_A 27 GKIDLGVGVYKDATGHTP-IMRAVHAAEQRMLETETT---KTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTG 102 (394)
T ss_dssp TCEECCCCSCCCTTSCCC-CCHHHHHHHHHHHHHCCC---CCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHH
T ss_pred cccccccceeeCCCCCcc-CcHHHHHHHHHhcCCccc---CCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchh
Confidence 689999887755554 3 579999999998865211 1121 122345666666554 210 1368999 999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCc
Q 002941 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (863)
Q Consensus 473 AvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (863)
|++.+++++ +.+. . | .+|++...+||+....+...+..
T Consensus 103 a~~~~~~~~-~~~~--~----g------------d~vl~~~p~~~~~~~~~~~~g~~----------------------- 140 (394)
T 2ay1_A 103 ALRQALELA-RMAN--P----D------------LRVFVSDPTWPNHVSIMNFMGLP----------------------- 140 (394)
T ss_dssp HHHHHHHHH-HHHC--T----T------------CCEEEEESCCHHHHHHHHHHTCC-----------------------
T ss_pred HHHHHHHHH-HhcC--C----C------------CEEEEcCCCChhHHHHHHHcCCc-----------------------
Confidence 999999987 3231 1 2 46999999999976544332210
Q ss_pred ccccCceeeecCc--chhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 002941 553 VFMYNSKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (863)
Q Consensus 553 ~~~~~~~~~~~~P--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViq 630 (863)
+..++.. +.+ ..| .+.+++.+++ .+...+++++... +
T Consensus 141 ------~~~~~~~~~~~~---------------------~~d--------~~~l~~~l~~-----~~~~~~~~~~~~~-~ 179 (394)
T 2ay1_A 141 ------VQTYRYFDAETR---------------------GVD--------FEGMKADLAA-----AKKGDMVLLHGCC-H 179 (394)
T ss_dssp ------EEEEECEETTTT---------------------EEC--------HHHHHHHHHT-----CCTTCEEEEESSS-C
T ss_pred ------eEEEecccccCC---------------------ccC--------HHHHHHHHHh-----CCCCCEEEEeCCC-C
Confidence 0011110 000 011 2456666653 1233556666665 8
Q ss_pred cCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC--CcchhhhcC-CCCcEE---EeccccC-CCCCCceeeec
Q 002941 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VETTADLLG-CVPDIA---CYGKLLT-GGVIPLAATLA 703 (863)
Q Consensus 631 g~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG--~~~a~e~~g-v~PDiv---t~sKgLg-gG~~Pigav~~ 703 (863)
+..|. +++.+++++|.++|++||+++|+||+|++|++.| .......+. ..+|++ ++||+++ +| +++|++++
T Consensus 180 nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~ 257 (394)
T 2ay1_A 180 NPTGA-NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYR-ERTGCLLA 257 (394)
T ss_dssp TTTCC-CCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGG-GCEEEEEE
T ss_pred CCCCC-CCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcC-CccceEEE
Confidence 88886 5688999999999999999999999999997754 222333221 234543 7899998 78 89999998
Q ss_pred ---cHHHHHhhhcCCccceeecccCCC-ccHHHHHHHHHHHHHhc-C---hhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 704 ---TNAVFDSFVGDSKLKALLHGHSYS-AHALGCAAAAKSIKWFK-D---PQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 704 ---~~~i~~~l~~~~~~~~~~~~~T~~-~~pla~AAalAaL~~l~-~---~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
++++++.+...- . ..+..++. .++++++++.++|+... . ++..+++.+..+..++.+.+.+.+.....
T Consensus 258 ~~~~~~~~~~l~~~~--~-~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~- 333 (394)
T 2ay1_A 258 LCADAATRELAQGAM--A-FLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSD- 333 (394)
T ss_dssp ECSSHHHHHHHHHHH--H-HHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-
T ss_pred EeCCHHHHHHHHHHH--H-HHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-
Confidence 776655433200 0 01224444 48999999999887431 0 12344555555555555554444332110
Q ss_pred CeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 776 TVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 776 ~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
.+..+. ..|+++.+++. ...+...|.++||++.+. +|+.++ .++++++++++++|+++
T Consensus 334 ~~~~~~~~~g~~~~~~~~------------~~~~~~~l~~~gi~v~~~---~Ris~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 334 RFGFVAEHRGMFSRLGAT------------PEQVKRIKEEFGIYMVGD---SRINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp TTTHHHHCCSSEEECCCC------------HHHHHHHHHHHCEECCTT---CEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred CeeEEcCCceEEEeeCCC------------HHHHHHHHHhCCEEecCC---CeEEee-cCCHhhHHHHHHHHHHc
Confidence 121122 23666555442 134666777999999874 477765 57999999999998765
No 114
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.82 E-value=9.2e-20 Score=209.10 Aligned_cols=357 Identities=12% Similarity=0.026 Sum_probs=200.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCC-CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~-~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~AL 478 (863)
.|||+.+++++ |+|.+|+.+++..... .+ ..+...+|+++|+++++ .++++|++||++|++.|+
T Consensus 42 ~ylD~~~~~~~--------~~v~~a~~~~l~~~~~----~y~~~~~~~~l~~~la~~~~---~~~v~~t~~gt~A~~~al 106 (467)
T 2oqx_A 42 VFIDLLTDSGT--------GAVTQSMQAAMMRGDE----AYSGSRSYYALAESVKNIFG---YQYTIPTHQGRGAEQIYI 106 (467)
T ss_dssp CSEECSCCSSC--------SCCCHHHHHHTTSCCC----CSSSCHHHHHHHHHHHHHHC---CSEEEEEC--CCSHHHHH
T ss_pred eeEecccCCCc--------HHHHHHHHHHhccCcc----eeccCchhHHHHHHHHHHhC---cCcEEEcCCcHHHHHHHH
Confidence 79999875544 7788888888753211 22 34567899999999997 478999999999999999
Q ss_pred HHHHHHH-HhhccccccccCCCccccccccEEEEecCCCccCccccceecC-CCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 479 KMAFRKF-SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQA-PSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 479 klA~r~~-~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++++ . +..+|.+ | +..||.. .||+.+..+..... .....+. . ...++. .
T Consensus 107 ~~~~~-~~~~~~G~~--~----------~d~Ii~~--~~h~~t~~~~~~~~~~~~~~~~------~--~~~~~~-~---- 158 (467)
T 2oqx_A 107 PVLIK-KREQEKGLD--R----------SKMVAFS--NYFFDTTQGHSQINGCTVRNVY------I--KEAFDT-G---- 158 (467)
T ss_dssp HHHHH-HHHHHHCCC--T----------TTCEEEE--SSCCHHHHHHHHHTTCEEEECB------C--TTTTCT-T----
T ss_pred HHHhc-cccccCCCC--c----------cceEEec--ccccccchhhhhccCcceeecc------c--cccccC-C----
Confidence 99843 2 1111210 0 0336654 68977643332211 0000000 0 000000 0
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
...| ++...| .+.|++.+.+ .+.+++++|++||+ ++.+|..
T Consensus 159 -----~~~~---------------------~~~~~d--------~~~Le~~i~~----~~~~~~~~vi~~~~-~n~~gG~ 199 (467)
T 2oqx_A 159 -----VRYD---------------------FKGNFD--------LEGLERGIEE----VGPNNVPYIVATIT-SNSAGGQ 199 (467)
T ss_dssp -----SCCT---------------------TTTCBC--------HHHHHHHHHH----HCGGGCCCEEEESS-BCGGGCB
T ss_pred -----CCCC---------------------ccCCcC--------HHHHHHHHHh----cCCCceeEEEEecc-ccCCCCc
Confidence 0000 000012 2456666752 11246899999997 8886557
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEeccccc----------ccccCCc---chhhhcCCCCcE--EEeccccCCCCCCceee
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTG----------FWRLGVE---TTADLLGCVPDI--ACYGKLLTGGVIPLAAT 701 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TG----------fGRtG~~---~a~e~~gv~PDi--vt~sKgLggG~~Pigav 701 (863)
+++.+++++|+++|++||++||+|++|.. .+..|.. ++.+.+ ..+|+ ++++|+++ +|+|++
T Consensus 200 ~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~~s~sK~~g---~~~Gg~ 275 (467)
T 2oqx_A 200 PVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY-KYADMLAMSAKKDAM---VPMGGL 275 (467)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG-GGCSEEEEESSSTTC---CSSCEE
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhh-ccCCeEEEecccccC---CCCceE
Confidence 78899999999999999999999977643 1344432 221100 12455 46689885 466554
Q ss_pred -eccHH-HHHhhhcCCccc-eeecccCCCccHHHHHHHHH-HHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 002941 702 -LATNA-VFDSFVGDSKLK-ALLHGHSYSAHALGCAAAAK-SIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (863)
Q Consensus 702 -~~~~~-i~~~l~~~~~~~-~~~~~~T~~~~pla~AAalA-aL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v 777 (863)
+++++ +++.+..-.... ......++++.+..+.++++ .++...+++..++..++.+++.+.| .+. ..+.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L----~~~--~~~~~ 349 (467)
T 2oqx_A 276 LCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGL----EEI--GVVCQ 349 (467)
T ss_dssp EEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----HHT--TCCEE
T ss_pred EEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHH----HHC--CCeee
Confidence 55656 444332100000 00011234443333333332 2333223333444455555555433 322 34444
Q ss_pred eEecccceEEEEEEcc--CCcCCCCchHH-HHHHHHHH-HHCCcEEEecC------------------CEEEEecCCC-C
Q 002941 778 QRVVALGTLCAIELQA--AGCNAGYGSLY-AASLLKKL-REDGVYMRPLG------------------NVIYLMCGPC-S 834 (863)
Q Consensus 778 ~~vrg~Gl~~~iel~~--~~~~~~~~~~~-~~~l~~~l-~e~GV~~~p~g------------------~~lr~~ppl~-~ 834 (863)
..+ |.++.+.+.. .... .... +..++..| .++||++.|.+ +.+|+.++.. +
T Consensus 350 -~~~--~~~~~~~~~~~~~~~~---~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~ 423 (467)
T 2oqx_A 350 -QAG--GHAAFVDAGKLLPHIP---ADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATY 423 (467)
T ss_dssp -EEC--SSCEEEEHHHHSTTSC---GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTS
T ss_pred -cCC--ceEEEEechhhcccCC---cccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCC
Confidence 443 4455555532 1100 0111 45678888 89999998732 6899999988 9
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~~l~ 854 (863)
|+++|++++++|+++++++.
T Consensus 424 t~e~i~~~~~~l~~~l~~~~ 443 (467)
T 2oqx_A 424 TQTHMDFIIEAFKHVKENAA 443 (467)
T ss_dssp CHHHHHHHHHHHHHHHHSGG
T ss_pred CHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999987654
No 115
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.82 E-value=3.9e-19 Score=197.10 Aligned_cols=324 Identities=12% Similarity=0.078 Sum_probs=210.4
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCC--CeEEEeCChhhHHHHHHHHHHHHHHhhcccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA--SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~--~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tg 494 (863)
-+|+|.+|+.+++.... .....+...++.++|+++++.+ . +.++|++||++|++ +++.+++ .
T Consensus 13 ~~~~v~~a~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~-~~~~~v~~~~g~t~al~-~~~~~~~---------~- 76 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGFT----SKEFVEALAYSLKGLRYVMGAS-KNYQPLIIPGGGTSAME-SVTSLLK---------P- 76 (384)
T ss_dssp CCHHHHHHTTCCSCCTT----SHHHHHHHHHHHHHHHHHHTCC-TTSEEEEEESCHHHHHH-HGGGGCC---------T-
T ss_pred CCHHHHHHhhccccccc----cHHHHHHHHHHHHHHHHHhCCC-CCCcEEEEcCCcHHHHH-HHHhhcC---------C-
Confidence 36888888877653211 1112456778899999988754 3 56999999999999 8875520 1
Q ss_pred ccCCCccccccccEEEEecCCCccCcccccee-cCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhc
Q 002941 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEA-QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (863)
Q Consensus 495 r~~~~~~~~~~r~~II~~~~sYHG~t~gals~-t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~ 573 (863)
..+||+.+.+|||.....+.. .|. .+..++.+..+
T Consensus 77 -----------gd~vi~~~~~~~~~~~~~~~~~~g~----------------------------~~~~v~~~~~~----- 112 (384)
T 3zrp_A 77 -----------NDKILVVSNGVFGDRWEQIFKRYPV----------------------------NVKVLRPSPGD----- 112 (384)
T ss_dssp -----------TCEEEEECSSHHHHHHHHHHTTSSC----------------------------EEEEECCSTTC-----
T ss_pred -----------CCEEEEecCCcchHHHHHHHHHcCC----------------------------cEEEecCCCCC-----
Confidence 257999999999964332211 010 01112211100
Q ss_pred cccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc
Q 002941 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (863)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~ 653 (863)
..| .+.+++.+.+ .++.+|+++++ ++..|.+.+ +++|.++|++|
T Consensus 113 ----------------~~d--------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~ 156 (384)
T 3zrp_A 113 ----------------YVK--------PGEVEEEVRK-------SEYKLVALTHV-ETSTGVREP----VKDVINKIRKY 156 (384)
T ss_dssp ----------------CCC--------HHHHHHHHHH-------SCEEEEEEESE-ETTTTEECC----HHHHHHHHGGG
T ss_pred ----------------CCC--------HHHHHHHHHh-------CCCcEEEEeCC-CCCCceECc----HHHHHHHHHhc
Confidence 011 2456666652 24788999987 999998876 89999999999
Q ss_pred CCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhh-hcCCc---------cce--
Q 002941 654 KIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF-VGDSK---------LKA-- 719 (863)
Q Consensus 654 gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l-~~~~~---------~~~-- 719 (863)
|+++|+||+++ +|.. ...... ..+|+++++ |+++|+ .++|++++++++++.+ ..... ...
T Consensus 157 ~~~li~D~a~~-~~~~--~~~~~~--~~~d~~~~s~~K~~~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (384)
T 3zrp_A 157 VELIVVDGVSS-VGAE--EVKAEE--WNVDVYLTASQKALGSA-AGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVM 230 (384)
T ss_dssp EEEEEEECTTT-TTTS--CCCTTT--TTCSEEEEETTSTTCCC-SSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHH
T ss_pred CCEEEEECccc-ccCc--cccccc--cCCCEEEecCcccccCC-CceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 99999999995 4322 112222 247888665 999887 6899999999998877 21100 000
Q ss_pred --ee--cccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE--ecccceEEEEEEc
Q 002941 720 --LL--HGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR--VVALGTLCAIELQ 792 (863)
Q Consensus 720 --~~--~~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~--vrg~Gl~~~iel~ 792 (863)
+. ....+ +.++.++++..++++.+++.+ .+++.+..+.+++.+.+.+.+. ....+.. ....+.++.+.+.
T Consensus 231 ~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~ 307 (384)
T 3zrp_A 231 RGAEEGKAAYFATPPVHVILQLAEAFRLIEKEG-IENRIKRHTMVASAIRAGLEAL--GLEIVARRPESYSNTVTGVILK 307 (384)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHT--TCCBSCSSGGGBCSSEEEEECS
T ss_pred HhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHC--CCeEccCcccccCccEEEEECC
Confidence 00 12223 457778888888888775432 2344444444555444443332 2222111 1234667777775
Q ss_pred cCCcCCCCchHHHHHHHHHHHHCCcEEEecC----CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 793 AAGCNAGYGSLYAASLLKKLREDGVYMRPLG----NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 793 ~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g----~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
... ...+.+.|.++||++++.. +.+|+.++..++++++++++++|+++++++.
T Consensus 308 ~~~---------~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 308 VAD---------PQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp SSC---------HHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCC---------HHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence 422 5678999999999999876 7899998888999999999999999998763
No 116
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.82 E-value=3.2e-19 Score=184.84 Aligned_cols=213 Identities=22% Similarity=0.246 Sum_probs=157.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccCCCccccccchhh
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSIL 117 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (863)
+.|+|+++.+|+|||++|+.|+.+|. ++|+||.++||.++|....+. ++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la-----~~G~rVll~dp~~~~~~~~~~---------~~----------------- 50 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAK-----AAGYRTAGYKPVASGSEKTPE---------GL----------------- 50 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHH-----HTTCCEEEECSEEESCBCCTT---------SC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH-----HCCCCEEEEcceecCCccCCC---------Cc-----------------
Confidence 46999999999999999999999999 899999999998876532110 00
Q ss_pred hhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCChhHH
Q 002941 118 FSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKV 197 (863)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~~~ 197 (863)
...+...+....... ......+++.+..|.+|++++..+ +.....+.+
T Consensus 51 ~~~d~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 98 (224)
T 1byi_A 51 RNSDALALQRNSSLQ-------------------------------LDYATVNPYTFAEPTSPHIISAQE-GRPIESLVM 98 (224)
T ss_dssp BCHHHHHHHHTCSSC-------------------------------CCHHHHCSEEESSCSCHHHHHHHH-TCCCCHHHH
T ss_pred ChHHHHHHHHHhCCC-------------------------------CChhhcccEEeCCCCCHHHHHHHc-CCCCCHHHH
Confidence 000000000000000 000113467788899999887766 666778888
Q ss_pred HHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhC
Q 002941 198 IETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLR 277 (863)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~ 277 (863)
.+.++++.++| |++||||+||+.+|+.....++++++.++.|||+|+....+++++++.+++.++..
T Consensus 99 ~~~l~~l~~~y-------------D~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~ 165 (224)
T 1byi_A 99 SAGLRALEQQA-------------DWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHA 165 (224)
T ss_dssp HHHHHHHHTTC-------------SEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-------------CEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHC
Confidence 88888887776 99999999999999766678999999999999999999999999999999999999
Q ss_pred CCcEEEEEEcCCCCC--CHHHHHHhhc--CCCCeee-cCCCCC-CCchhhhhhhh
Q 002941 278 GYDVVAVVFEDHGLV--NEVPLMSYLR--NRVPVLV-LPPLPQ-DSSNDLMEWFD 326 (863)
Q Consensus 278 ~~~v~gvi~n~~~~~--~~~~~~~~~~--~~~pvl~-~p~~~~-~~~~~~~~~l~ 326 (863)
++++.|+|+|++... ......+.++ .++|+++ ||+.++ ....++.++++
T Consensus 166 ~~~i~gvvlN~~~~~~~~~~~~~~~l~~~~~~~vl~~Ip~~~~~~~~~~~~~~~~ 220 (224)
T 1byi_A 166 GLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYIN 220 (224)
T ss_dssp TCCEEEEEEECCSSCCTTHHHHHHHHHHHSSSCEEEEECCCTTCTTCCCCGGGCC
T ss_pred CCcEEEEEEeCCCCchhhHHHHHHHHHHHcCCCEEEECCCCcCCccHHHHHHHhc
Confidence 999999999998433 1222222222 4899999 999883 33335666664
No 117
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.82 E-value=5.3e-19 Score=196.20 Aligned_cols=322 Identities=10% Similarity=0.057 Sum_probs=203.5
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCC-CCeEEEeCChhhHHHHHHHHHHHHHHhhccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGW-ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~-~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr 495 (863)
-+|+|.+|+.+++.. +.. ....+...++.++|+++++.+. .+.+++++||++|++.+++.+++ +|
T Consensus 30 ~~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~---------~g- 95 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPY--FRT--TEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFT---------KK- 95 (376)
T ss_dssp CCHHHHHHHTSCCCC--CSS--HHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCC---------TT-
T ss_pred CcHHHHHHhcCCCCC--CCC--HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccC---------CC-
Confidence 368888888776532 210 0112456778888888876431 13455689999999999987621 12
Q ss_pred cCCCccccccccEEEEecCCCccCcccccee-cCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcc
Q 002941 496 LGKDTTEKCIELKVLALKGSYHGDTLGAMEA-QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (863)
Q Consensus 496 ~~~~~~~~~~r~~II~~~~sYHG~t~gals~-t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~ 574 (863)
.+||+...+||+........ .+.. +..++.+..+
T Consensus 96 -----------d~vi~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~------ 130 (376)
T 3f0h_A 96 -----------DKVLVIDGGSFGHRFVQLCEIHEIP----------------------------YVALKLEHGK------ 130 (376)
T ss_dssp -----------CCEEEEESSHHHHHHHHHHHHTTCC----------------------------EEEEECCTTC------
T ss_pred -----------CeEEEEeCChhhHHHHHHHHHcCCc----------------------------eEEEeCCCCC------
Confidence 56899988888854321111 0100 0111111100
Q ss_pred ccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC
Q 002941 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (863)
Q Consensus 575 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g 654 (863)
..| .+.+++.+ ..++.+|+++++ ++..|.+.+ +++|.++|++||
T Consensus 131 ---------------~~d--------~~~l~~~~--------~~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~ 174 (376)
T 3f0h_A 131 ---------------KLT--------KEKLYEYD--------NQNFTGLLVNVD-ETSTAVLYD----TMMIGEFCKKNN 174 (376)
T ss_dssp ---------------CCC--------HHHHHTTT--------TSCCCEEEEESE-ETTTTEECC----HHHHHHHHHHTT
T ss_pred ---------------CCC--------HHHHHHhh--------ccCceEEEEecc-cCCcceecC----HHHHHHHHHHcC
Confidence 011 12333322 235677888886 899998876 999999999999
Q ss_pred CeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCcccee-e-----------c
Q 002941 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKAL-L-----------H 722 (863)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~-~-----------~ 722 (863)
+++|+||+++++++. +..+.+|+...+.+++|+++|+ .++|++++++++++.+..... ..+ . .
T Consensus 175 ~~li~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~l~~~-~G~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 249 (376)
T 3f0h_A 175 MFFVCDCVSAFLADP---FNMNECGADVMITGSQKVLACP-PGISVIVLAPRGVERVEKSKV-RTMYFDLKDALKNQERG 249 (376)
T ss_dssp CEEEEECTTTTTTSC---CCHHHHTCSEEEEETTTTTCCC-SSCEEEEECHHHHHHHHTCCC-CCSTTCHHHHHHHHTTT
T ss_pred CEEEEEcCccccCcc---ccccccCccEEEecCcccccCC-CceEEEEECHHHHHHhhcCCC-CceeecHHHHHhhcccC
Confidence 999999999765443 4456666544444567999876 688999999999988764210 000 0 1
Q ss_pred ccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC-eeEecccceEEEEEEccCCcCCCCc
Q 002941 723 GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT-VQRVVALGTLCAIELQAAGCNAGYG 801 (863)
Q Consensus 723 ~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~-v~~vrg~Gl~~~iel~~~~~~~~~~ 801 (863)
+..++.+..+++++.++++.+++.+..+++.++.+.+++.+. +.+.+.+. +......+.++.+.....
T Consensus 250 ~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~----~~L~~~~~~~~~~~~~~~~~~~~~~~~------- 318 (376)
T 3f0h_A 250 QTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFR----AKIKDLPFELVSESPANGVTSVHPTTA------- 318 (376)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH----HHTTTSSEEECCSSBBTTEEEEEESSS-------
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHHcCCccCccccCceEEEEeCCCC-------
Confidence 223455566668888889887654334556666666666543 33444442 111112333444433211
Q ss_pred hHHHHHHHHHHHHC-CcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 802 SLYAASLLKKLRED-GVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 802 ~~~~~~l~~~l~e~-GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
...++.+.|+++ ||++++. ++.+|+.++..+|++++++++++|+++++
T Consensus 319 --~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~ 372 (376)
T 3f0h_A 319 --NAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQK 372 (376)
T ss_dssp --CHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 256788899998 9999874 37899999889999999999999998875
No 118
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.81 E-value=5.3e-19 Score=198.35 Aligned_cols=334 Identities=12% Similarity=0.001 Sum_probs=205.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHh-cccccC-CCC--CChHHHHHH----HHHHhhcCCCCCCeEEEeCChh
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAAR-FGHVMF-PEN--VYEPALECA----ELLLQGVGKGWASRAYFSDNGS 471 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~-~~~~~~-~~~--~~~~~~eLa----e~L~~~~p~~~~~~v~f~~SGS 471 (863)
+|+|+.++... + +|+|.+|+.+++++ +.+... ..+ ..+....+. ++|+++++.+ ...++++||+
T Consensus 24 ~~i~~~~~~~~--~----~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~--~~~i~~~sGt 95 (407)
T 2dkj_A 24 EGLELIASENF--V----SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAA--WANVQPHSGS 95 (407)
T ss_dssp TSEECCTTCCC--C----CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS--EEECCCSSHH
T ss_pred cceeeccCCCC--C----CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCC--cceEEecchH
Confidence 68888776533 2 59999999999865 322110 111 123222233 4788888742 2336778999
Q ss_pred hHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCc--cccceecCCCCCCCCCcCCcccCCCcccC
Q 002941 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT--LGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (863)
Q Consensus 472 eAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t--~gals~t~~~~~~~~~~~~~~~~~~~~~~ 549 (863)
+|++.|++.+++ .| .+|++...+||+.. ..++...|..
T Consensus 96 ~a~~~~~~~~~~---------~g------------d~Vl~~~~~~~~~~~~~~~~~~~g~~------------------- 135 (407)
T 2dkj_A 96 QANMAVYMALME---------PG------------DTLMGMDLAAGGHLTHGSRVNFSGKL------------------- 135 (407)
T ss_dssp HHHHHHHHHHCC---------TT------------CEEEEECGGGTCCGGGTCTTSHHHHH-------------------
T ss_pred HHHHHHHHHhcC---------CC------------CEEEEecccccCccchHHHHHhcCce-------------------
Confidence 999999987721 12 57999999887763 2222221100
Q ss_pred CCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccc
Q 002941 550 PPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPV 628 (863)
Q Consensus 550 ~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIv-EPV 628 (863)
+..++++. + ..+...| .+.+++.+.+ .++.+|++ +|.
T Consensus 136 ---------~~~~~~~~--------------~----~~~~~~d--------~~~l~~~l~~-------~~~~~v~~~~p~ 173 (407)
T 2dkj_A 136 ---------YKVVSYGV--------------R----PDTELID--------LEEVRRLALE-------HRPKVIVAGASA 173 (407)
T ss_dssp ---------SEEEEECC--------------C----TTTSSCC--------HHHHHHHHHH-------HCCSEEEECCSS
T ss_pred ---------EEEEecCC--------------C----cccCccC--------HHHHHHHHhh-------cCCeEEEEeccc
Confidence 00011100 0 0000011 2455666642 13456666 886
Q ss_pred cccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccc-ccccCCcchhhhcCCCCcEE--EeccccCCCCCCceeeecc-
Q 002941 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG-FWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLAT- 704 (863)
Q Consensus 629 iqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TG-fGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~- 704 (863)
++ ... + +++|.++|++||++||+||+|++ +...|..... ++ .+|++ +++|+|+|+ ++|+++++
T Consensus 174 -~~---~~~-~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~--~~-~~di~~~s~sK~l~g~--~~G~~~~~~ 240 (407)
T 2dkj_A 174 -YP---RFW-D---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNP--LP-YAHVVTSTTHKTLRGP--RGGLILSND 240 (407)
T ss_dssp -CC---SCC-C---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCC--TT-TCSEEEEESSGGGCCC--SCEEEEESC
T ss_pred -cC---CCC-C---HHHHHHHHHHcCCEEEEEccccccccccCccCCc--cc-cccEEEEeccccCCCC--CceEEEECC
Confidence 43 333 2 89999999999999999999975 5445543211 12 27888 789999864 57999999
Q ss_pred HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc
Q 002941 705 NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG 784 (863)
Q Consensus 705 ~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G 784 (863)
+++++.+... ..++.+.+.++..++++.++|+.+.+. ..+++.++.+.+++.+.+.+.+. ..+.+.. ++.|
T Consensus 241 ~~~~~~l~~~-----~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~-~~~~ 311 (407)
T 2dkj_A 241 PELGKRIDKL-----IFPGIQGGPLEHVIAGKAVAFFEALQP-EFKEYSRLVVENAKRLAEELARR--GYRIVTG-GTDN 311 (407)
T ss_dssp HHHHHHHHHH-----HTTTTCSSCCHHHHHHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHHHHT--TCEEGGG-SCSS
T ss_pred HHHHHHHHhh-----hcccccCCCcHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHhC--CceeecC-CCCc
Confidence 8998877541 123445567888888888999876442 23344444445555444343322 2211111 4578
Q ss_pred eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----------CCEEEEecCC----CCcHHHHHHHHHHHHHH
Q 002941 785 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----------GNVIYLMCGP----CSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 785 l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----------g~~lr~~ppl----~~t~eeid~~v~~L~~~ 849 (863)
.++.+++.... .....+.+.|.++||++.+. .+.+|+.++. .++++++++++++|+++
T Consensus 312 ~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~ 384 (407)
T 2dkj_A 312 HLFLVDLRPKG-------LTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRA 384 (407)
T ss_dssp SEEEEECGGGT-------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHH
T ss_pred eEEEEECcccC-------CCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHH
Confidence 89889886421 01456788899999999873 3579998665 38999999999999999
Q ss_pred HHH
Q 002941 850 LEE 852 (863)
Q Consensus 850 l~~ 852 (863)
+++
T Consensus 385 ~~~ 387 (407)
T 2dkj_A 385 LLE 387 (407)
T ss_dssp HHH
T ss_pred Hhc
Confidence 987
No 119
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.81 E-value=2.1e-18 Score=189.44 Aligned_cols=327 Identities=13% Similarity=0.044 Sum_probs=201.1
Q ss_pred cCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccc
Q 002941 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (863)
Q Consensus 412 ~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~ 491 (863)
..|+ .+|+|.+|+.+++..+... .+..+...+++++|+++++.+ .++++|++||++|++.+++.+++
T Consensus 22 ~~~~-~~~~v~~a~~~~~~~~~~~---~g~~~~~~~~~~~l~~~~g~~-~~~v~~~~g~t~a~~~~~~~~~~-------- 88 (359)
T 1svv_A 22 YSVG-MHPKILDLMARDNMTQHAG---YGQDSHCAKAARLIGELLERP-DADVHFISGGTQTNLIACSLALR-------- 88 (359)
T ss_dssp CSSC-CCHHHHHHHHHHTTCCCCS---TTCSHHHHHHHHHHHHHHTCT-TSEEEEESCHHHHHHHHHHHHCC--------
T ss_pred CcCC-CCHHHHHHHHHHHhhcccc---ccccHHHHHHHHHHHHHhCCC-CccEEEeCCchHHHHHHHHHHhC--------
Confidence 3455 7899999999998764432 345788899999999988744 46899999999999999998721
Q ss_pred cccccCCCccccccccEEEEecCCCccCccc-cceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhh
Q 002941 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLG-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (863)
Q Consensus 492 ~tgr~~~~~~~~~~r~~II~~~~sYHG~t~g-als~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (863)
+| .+|++...+||+.... .+...|. .+..++.++ +
T Consensus 89 -~g------------d~vl~~~~~~~~~~~~~~~~~~g~----------------------------~~~~v~~~~-~-- 124 (359)
T 1svv_A 89 -PW------------EAVIATQLGHISTHETGAIEATGH----------------------------KVVTAPCPD-G-- 124 (359)
T ss_dssp -TT------------EEEEEETTSHHHHSSTTHHHHTTC----------------------------CEEEECCTT-S--
T ss_pred -CC------------CEEEEcccchHHHHHHHHHhcCCC----------------------------eeEEEeCCC-C--
Confidence 12 5799999999986543 1111110 011111110 0
Q ss_pred hhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHH
Q 002941 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (863)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc 650 (863)
.-| .+.+++.+++.. ..++.++.+|++++. +..|.+. |.+++++|.++|
T Consensus 125 -------------------~~d--------~~~l~~~l~~~~-~~~~~~~~~v~~~~~--~ptG~~~-~~~~l~~i~~~~ 173 (359)
T 1svv_A 125 -------------------KLR--------VADIESALHENR-SEHMVIPKLVYISNT--TEVGTQY-TKQELEDISASC 173 (359)
T ss_dssp -------------------CCC--------HHHHHHHHHHSC-STTSCEEEEEEEESS--CTTSCCC-CHHHHHHHHHHH
T ss_pred -------------------eec--------HHHHHHHHHHHH-hccCCCceEEEEEcC--CCCceec-CHHHHHHHHHHH
Confidence 011 245666665310 012335888989885 4677655 579999999999
Q ss_pred HHcCCeEEEecccccc--cccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCC
Q 002941 651 QNRKIPVIFDEVFTGF--WRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSY 726 (863)
Q Consensus 651 ~~~gilLI~DEV~TGf--GRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~ 726 (863)
++||+++|+||++++| |+++.....-..+..+|++++ .|. ||...+|++++++++++.+... ...+++++
T Consensus 174 ~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~--g~~~~~g~l~~~~~~~~~~~~~----~~~~~~~~ 247 (359)
T 1svv_A 174 KEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA--GGMFGEALIILNDALKPNARHL----IKQRGALM 247 (359)
T ss_dssp HHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT--TCSSCEEEEECSGGGCTTHHHH----HHHTTCCC
T ss_pred HHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC--CCCCceEEEEEcccHHHHHHHH----HhcCCccc
Confidence 9999999999999776 555432111111135788865 674 4435668888898887766431 00133444
Q ss_pred CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHH
Q 002941 727 SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAA 806 (863)
Q Consensus 727 ~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~ 806 (863)
..++...++..+ .+++.. .+++.+..+.+++.+.+.+ +. .....+. ...+.++.+.+. .
T Consensus 248 ~~~~~~~~~~~~---~l~~~~-~~~~~~~~~~~~~~l~~~L-~~-~~~~~~~--~~~~~~~~~~~~-------------~ 306 (359)
T 1svv_A 248 AKGWLLGIQFEV---LMKDNL-FFELGAHSNKMAAILKAGL-EA-CGIRLAW--PSASNQLFPILE-------------N 306 (359)
T ss_dssp TTTHHHHHHHHH---HTSTTH-HHHHHHHHHHHHHHHHHHH-HH-TTCCBSS--CCSSSEECBEEE-------------H
T ss_pred ccchhhHHHHHH---HHhhhh-HHHHHHHHHHHHHHHHHHh-cc-CCeEEcc--CCccceEEEEcC-------------H
Confidence 433333333222 344432 3445555555566555444 22 2222211 122334434332 2
Q ss_pred HHHHHHHHC-CcEEEec----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 807 SLLKKLRED-GVYMRPL----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 807 ~l~~~l~e~-GV~~~p~----g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
++.+.|+++ ||++.+. .+.+|+.+++.++++++++++++|+++++++
T Consensus 307 ~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 307 TMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp HHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 578889998 9998642 3689999888999999999999999887654
No 120
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.81 E-value=5.6e-18 Score=192.43 Aligned_cols=214 Identities=12% Similarity=0.101 Sum_probs=149.5
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc----chhhhcCCCCcEEEeccccCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE----TTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~----~a~e~~gv~PDivt~sKgLggG 694 (863)
++.+|++.|..++..|.+ .+.+.+++|.++|++||+++|+||++++|.+.|.. ......+....+.+|||.++.|
T Consensus 190 ~~~~v~~~~~~~NPtG~~-~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~G 268 (425)
T 2r2n_A 190 TPKFLYTVPNGNNPTGNS-LTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSG 268 (425)
T ss_dssp CCSEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCST
T ss_pred CceEEEECCCCcCCCCCc-CCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCc
Confidence 466777766447888865 57899999999999999999999999988666642 2222223334455889999988
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhh---HHhHHHHHHHHHHHHHHHHHHHH
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQT---NHNIIPERRILRELWDLELIQQI 771 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l---~~~l~~~~~~l~~~l~~~l~~~~ 771 (863)
+++|++++++++++.+.. .....+++.++++++++.++|+.+.++++ .+++++..+..++.+. +.+
T Consensus 269 -lRiG~~~~~~~l~~~l~~------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~L 337 (425)
T 2r2n_A 269 -LRIGFLTGPKPLIERVIL------HIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAIL----AAA 337 (425)
T ss_dssp -TCCEEEEEEHHHHHHHHH------HHHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
T ss_pred -cceEEEecCHHHHHHHHH------HHHHhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 899999999999988764 12456788899999999999986533322 3333333333344333 333
Q ss_pred hc-CCCeeE--ecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec----------CCEEEEecCCCCcHHH
Q 002941 772 SS-HRTVQR--VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----------GNVIYLMCGPCSSPEV 838 (863)
Q Consensus 772 ~~-~p~v~~--vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~----------g~~lr~~ppl~~t~ee 838 (863)
.+ .|.+.. ....|+++.+++.... . ....+.+.|.++||++.|+ .+.+|+... ..++++
T Consensus 338 ~~~~~~~~~~~~p~~g~~~~~~~~~~~-----~--~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~-~~~~~~ 409 (425)
T 2r2n_A 338 DKWLTGLAEWHVPAAGMFLWIKVKGIN-----D--VKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFS-SASPEQ 409 (425)
T ss_dssp HHHCSSSEEECCCSBSSEEEEEETTCS-----C--CHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECS-SCCHHH
T ss_pred HHHCCCCeEEeCCCceEEEEEEeCCCC-----C--HHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeC-CCCHHH
Confidence 33 343322 2456788888886421 0 0122577888999999873 268999855 369999
Q ss_pred HHHHHHHHHHHHHH
Q 002941 839 CSQLLLKLYQRLEE 852 (863)
Q Consensus 839 id~~v~~L~~~l~~ 852 (863)
+++++++|.+++++
T Consensus 410 i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 410 MDVAFQVLAQLIKE 423 (425)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998865
No 121
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.81 E-value=6e-19 Score=197.17 Aligned_cols=331 Identities=15% Similarity=0.035 Sum_probs=213.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCC-eEEEeCChhhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS-RAYFSDNGSTAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~-~v~f~~SGSeAvE~AL 478 (863)
.|+|..+ .++ .+|++.+|+.+++.. +.. ....+...+++++|+++++.+ .+ .++|++||++|++.++
T Consensus 35 ~~l~~~~------~~~-~~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~-~~~~v~~t~g~t~al~~~~ 102 (393)
T 1vjo_A 35 RLLLGPG------PSN-AHPSVLQAMNVSPVG--HLD--PAFLALMDEIQSLLRYVWQTE-NPLTIAVSGTGTAAMEATI 102 (393)
T ss_dssp CEECSSS------CCC-CCHHHHHHHSSCCCC--TTS--HHHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHHHHHHH
T ss_pred ceeccCC------CCC-CCHHHHHHHhccccc--ccC--HHHHHHHHHHHHHHHHHhCCC-CCcEEEEeCchHHHHHHHH
Confidence 6777432 334 679999998877643 111 012356778999999988753 35 7999999999999999
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccc-eecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gal-s~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
+.+++ .| .+|++...+||+.+...+ ...|.
T Consensus 103 ~~~~~---------~g------------d~Vl~~~~~~~~~~~~~~~~~~g~---------------------------- 133 (393)
T 1vjo_A 103 ANAVE---------PG------------DVVLIGVAGYFGNRLVDMAGRYGA---------------------------- 133 (393)
T ss_dssp HHHCC---------TT------------CEEEEEESSHHHHHHHHHHHHTTC----------------------------
T ss_pred HhccC---------CC------------CEEEEEcCChhHHHHHHHHHHcCC----------------------------
Confidence 87721 12 579999999998422111 11110
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
.+..++.+..+ ..| .+.+++.+.+ .++.+|++++. ++..|.+.
T Consensus 134 ~~~~v~~~~~~---------------------~~d--------~~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~ 176 (393)
T 1vjo_A 134 DVRTISKPWGE---------------------VFS--------LEELRTALET-------HRPAILALVHA-ETSTGARQ 176 (393)
T ss_dssp EEEEEECCTTC---------------------CCC--------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEEC
T ss_pred ceEEEecCCCC---------------------CCC--------HHHHHHHHhh-------CCceEEEEecc-CCCcceec
Confidence 01111211100 011 2456666642 13557888886 89999887
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCC
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDS 715 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~ 715 (863)
+ +++|.++|++||+++|+||+++ +|... ... ....+|+++.| |+++++. ++|++++++++++.+....
T Consensus 177 ~----l~~i~~l~~~~~~~li~Dea~~-~g~~~--~~~--~~~~~di~~~s~sK~l~~~~-~~G~l~~~~~~~~~~~~~~ 246 (393)
T 1vjo_A 177 P----LEGVGELCREFGTLLLVDTVTS-LGGVP--IFL--DAWGVDLAYSCSQKGLGCSP-GASPFTMSSRAIEKLQRRR 246 (393)
T ss_dssp C----CTTHHHHHHHHTCEEEEECTTT-TTTSC--CCT--TTTTCSEEECCSSSTTCSCS-SCEEEEECHHHHHHHHTCS
T ss_pred c----HHHHHHHHHHcCCEEEEECCcc-ccCcC--Ccc--cccCccEEEEcCcccccCCC-ceEEEEECHHHHHHHhccC
Confidence 6 8899999999999999999996 76542 222 23468999876 9999884 8999999999998875310
Q ss_pred -ccceeec------------ccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec
Q 002941 716 -KLKALLH------------GHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV 781 (863)
Q Consensus 716 -~~~~~~~------------~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr 781 (863)
....+.+ ..++ +.++++++++.++|+.+.+. ..+++.+..+.+++.+.+.+.+. ..+.+. ..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~-~~ 322 (393)
T 1vjo_A 247 TKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQE-GLANCWQRHQKNVEYLWERLEDI--GLSLHV-EK 322 (393)
T ss_dssp SCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHT--TCCBSS-CG
T ss_pred CCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHc--CCcccC-Cc
Confidence 0001111 2244 67899999999999986432 13344444444555444444332 232221 12
Q ss_pred c--cceEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec-----CCEEEEec-CCCCcHHHHHHHHHHHHHHH
Q 002941 782 A--LGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMC-GPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 782 g--~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-----g~~lr~~p-pl~~t~eeid~~v~~L~~~l 850 (863)
+ .+.++.+.+.... ....+.+.|.++ ||++.+. .+.+|+.+ ++..+++++++++++|.+++
T Consensus 323 ~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 323 EYRLPTLTTVCIPDGV--------DGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp GGBCSSEEEEECCTTC--------CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred cccCCcEEEEEcCCCC--------CHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 2 3456677664221 146788899988 9999874 37899984 45678889999999998875
No 122
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.81 E-value=9.6e-19 Score=192.45 Aligned_cols=340 Identities=12% Similarity=0.017 Sum_probs=211.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~AL 478 (863)
+++|+..| +.+ .+|+|.+|+.+++ .+.. ..+.++...++.++|+++++.. ..+.++|++||++|++.++
T Consensus 4 ~~~~~~~g----p~~--~~~~v~~a~~~~~---~~~~-~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~ 73 (366)
T 1m32_A 4 NYLLLTPG----PLT--TSRTVKEAMLFDS---CTWD-DDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVL 73 (366)
T ss_dssp -CEECSSS----SCC--CCHHHHHTTCCCC---CTTS-HHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHH
T ss_pred ccccccCC----CcC--CCHHHHHHHhhhh---cCCC-HHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHH
Confidence 45676655 333 5799999998753 2211 0112256788999999988731 1237999999999999999
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccce-ecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals-~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
+.+++ +| .+||+....||+.+...+. ..|..
T Consensus 74 ~~~~~---------~g------------d~vi~~~~~~~~~~~~~~~~~~g~~--------------------------- 105 (366)
T 1m32_A 74 GSALG---------PQ------------DKVLIVSNGAYGARMVEMAGLMGIA--------------------------- 105 (366)
T ss_dssp HHSCC---------TT------------CCEEEEESSHHHHHHHHHHHHHTCC---------------------------
T ss_pred HHhcC---------CC------------CeEEEEeCCCccHHHHHHHHHhCCc---------------------------
Confidence 87721 12 4588888888986432211 11100
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
+..++.+..+ ..| .+.+++.+.+ + .++.+|++... ++..|.+.
T Consensus 106 -~~~v~~~~~~---------------------~~d--------~~~l~~~l~~-----~-~~~~~v~~~~~-~nptG~~~ 148 (366)
T 1m32_A 106 -HHAYDCGEVA---------------------RPD--------VQAIDAILNA-----D-PTISHIAMVHS-ETTTGMLN 148 (366)
T ss_dssp -EEEEECCTTS---------------------CCC--------HHHHHHHHHH-----C-TTCCEEEEESE-ETTTTEEC
T ss_pred -eEEEeCCCCC---------------------CCC--------HHHHHHHHhc-----C-CCeEEEEEecc-cCCcceec
Confidence 0111111000 011 2456666653 1 12344444443 67788877
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCCCCCCceeeeccHHHHHhhhcCC
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSFVGDS 715 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLggG~~Pigav~~~~~i~~~l~~~~ 715 (863)
+ +++|.++|++||+++|+||+|+ +|... +..+. ..+|+++ ++|+++|+ .++|++++++++++.+....
T Consensus 149 ~----l~~i~~l~~~~~~~li~Dea~~-~~~~~--~~~~~--~~~di~~~s~~K~~~~~-~g~G~~~~~~~~~~~~~~~~ 218 (366)
T 1m32_A 149 P----IDEVGALAHRYGKTYIVDAMSS-FGGIP--MDIAA--LHIDYLISSANKCIQGV-PGFAFVIAREQKLAACKGHS 218 (366)
T ss_dssp C----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCTTT--TTCSEEEEESSSTTCCC-SSEEEEEEEHHHHTTCTTCC
T ss_pred C----HHHHHHHHHHcCCEEEEECCcc-ccCcC--ccccc--cCccEEEecCcccccCC-CceEEEEECHHHHHhhcCCC
Confidence 6 8999999999999999999995 55543 12222 2478875 57999877 57899999999988765421
Q ss_pred cccee-----e-------cccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-cc
Q 002941 716 KLKAL-----L-------HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VA 782 (863)
Q Consensus 716 ~~~~~-----~-------~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-rg 782 (863)
....+ + ....++.++.+++++.++|+.+++.+..+++.+..+.+++.+.+.+.+. ....+... ..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~ 296 (366)
T 1m32_A 219 RSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL--GFNTLLDDELH 296 (366)
T ss_dssp SCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT--TCCBSSCGGGB
T ss_pred CCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC--CCeeccCchhc
Confidence 10000 0 0113678999999999999987543212334444444455444443332 22221111 12
Q ss_pred cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec----CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 783 LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 783 ~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~----g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.|.++.+.+.+.. . .....+.+.|.++||++++. .+.+|+.++..++++++++++++|++++++
T Consensus 297 ~~~~~~~~~~~~~---~---~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 364 (366)
T 1m32_A 297 SPIITAFYSPEDP---Q---YRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMYW 364 (366)
T ss_dssp CSSEEEEECCCCT---T---CCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred CceEEEEEcCccC---C---CCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 4668888875310 0 02567889999999999874 378999988888999999999999887653
No 123
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.81 E-value=3.6e-19 Score=201.53 Aligned_cols=315 Identities=10% Similarity=0.002 Sum_probs=201.3
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEeCChhhHHH--HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccc
Q 002941 445 ALECAELLLQGVGKGWASRAYFSDNGSTAIE--IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522 (863)
Q Consensus 445 ~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE--~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~g 522 (863)
..+|.+.|+++++.. .+.++|+++|++|+. .+++...+ . ..|. .+ + -.....+|++...+||+....
T Consensus 72 ~~~lr~~ia~~~~~~-~~~i~~t~G~~~al~~~~~~~~l~~-~--~~g~--~~-~----~~~~gd~Vlv~~p~y~~~~~~ 140 (423)
T 3ez1_A 72 LPSARALFAGYLDVK-AENVLVWNNSSLELQGLVLTFALLH-G--VRGS--TG-P----WLSQTPKMIVTVPGYDRHFLL 140 (423)
T ss_dssp CHHHHHHHHHHTTSC-GGGEEECSSCHHHHHHHHHHHHHHT-C--CTTC--SS-C----GGGGCCEEEEEESCCHHHHHH
T ss_pred hHHHHHHHHHHhCCC-hhhEEEeCCcHHHHHHHHHHHHHhc-c--CCCc--cc-c----ccCCCCEEEEcCCCcHHHHHH
Confidence 567888898888643 468999999999997 77776521 0 0110 00 0 000015799999999987544
Q ss_pred cceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHH
Q 002941 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602 (863)
Q Consensus 523 als~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 602 (863)
....+. ..+++|... ..-| .+
T Consensus 141 ~~~~g~-------------------------------~~~~v~~~~--------------------~g~d--------~~ 161 (423)
T 3ez1_A 141 LQTLGF-------------------------------ELLTVDMQS--------------------DGPD--------VD 161 (423)
T ss_dssp HHHHTC-------------------------------EEEEEEEET--------------------TEEC--------HH
T ss_pred HHHcCC-------------------------------EEEeccCCC--------------------CCCC--------HH
Confidence 332211 001111000 0011 24
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHH-HHcCCeEEEecccccccccC-------Ccch
Q 002941 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC-QNRKIPVIFDEVFTGFWRLG-------VETT 674 (863)
Q Consensus 603 ~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc-~~~gilLI~DEV~TGfGRtG-------~~~a 674 (863)
.+++.+++ ..++.+|+++|..++..|.+. +.+.+++|.++| ++||+++|+||+|+.+...+ ..+.
T Consensus 162 ~l~~~l~~------~~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~ 234 (423)
T 3ez1_A 162 AVERLAGT------DPSVKGILFVPTYSNPGGETI-SLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVV 234 (423)
T ss_dssp HHHHHHHS------CTTEEEEEECSSSCTTTCCCC-CHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHH
T ss_pred HHHHHHhh------CCCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhh
Confidence 56666641 246788888875578888655 667799999999 99999999999998432222 1222
Q ss_pred h----hhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHH
Q 002941 675 A----DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNH 750 (863)
Q Consensus 675 ~----e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~ 750 (863)
. +..+....+.+|||.+.+| +++|++++++++++.+.. ..+..+++.++++++++.++|+.+. +.+.+
T Consensus 235 ~~~~~~~~~~~i~~~S~sK~~~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~ 306 (423)
T 3ez1_A 235 LARDAGYPDRAFVFASTSKITFAG-AGLGFVASSEDNIRWLSK------YLGAQSIGPNKVEQARHVKFLTEYP-GGLEG 306 (423)
T ss_dssp HHHHHTCTTSEEEEEESTTTSCSS-SSCEEEEECHHHHHHHHH------HHHHSCSCCCHHHHHHHHHHHHHST-THHHH
T ss_pred hhhccCCCCeEEEEeCchhhccCC-cceEEEEeCHHHHHHHHH------HHhhhccCCCHHHHHHHHHHHHhcc-chHHH
Confidence 2 1223333466899987778 899999999999998864 2345678889999999998888521 22222
Q ss_pred hHHHHH---HHHHHHHHHHHHHHHhcCC-CeeE-ecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---
Q 002941 751 NIIPER---RILRELWDLELIQQISSHR-TVQR-VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--- 822 (863)
Q Consensus 751 ~l~~~~---~~l~~~l~~~l~~~~~~~p-~v~~-vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--- 822 (863)
.+.+.. +..++.+.+.+.+.+...+ .+.. ....|+++.+++.... ...+...|.++||++.|.
T Consensus 307 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~~---------~~~~~~~l~~~gv~v~~~g~~ 377 (423)
T 3ez1_A 307 LMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEPV---------ADRVVKLAEAAGVSLTPAGAT 377 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSSC---------HHHHHHHHHHTTEECCCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCCc---------HHHHHHHHHHCCcEEecCccc
Confidence 232222 2233333334444444444 2322 2346788888886432 456788899999999882
Q ss_pred --------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 823 --------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 823 --------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.+.+|+.++.. +++++++++++|.++++++.
T Consensus 378 ~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~ 416 (423)
T 3ez1_A 378 YPAGQDPHNRNLRLAPTRP-PVEEVRTAMQVVAACIRLAT 416 (423)
T ss_dssp SSTTCCSSSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 27899987544 99999999999999998765
No 124
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.80 E-value=7.4e-19 Score=197.17 Aligned_cols=326 Identities=12% Similarity=0.021 Sum_probs=208.3
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~ 496 (863)
-+|+|.+|+.+++. .+.. ....+...++.++|+++++.+..+.++|++||++|++.+++.+++ .
T Consensus 24 ~~~~v~~a~~~~~~--~~~~--~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~---------~--- 87 (411)
T 3nnk_A 24 ADPRVLRAMSSQLI--GQYD--PAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIR---------P--- 87 (411)
T ss_dssp CCHHHHHHHTSCCC--CTTC--HHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCC---------T---
T ss_pred CCHHHHHHhhcccc--cccc--HHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcC---------C---
Confidence 46888888876541 1110 011245678899999988754222388999999999999987721 1
Q ss_pred CCCccccccccEEEEecCCCccCccccc-eecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccc
Q 002941 497 GKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (863)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~gal-s~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (863)
..+||+...+|||...... ...|. .+..++.+..+
T Consensus 88 ---------gd~Vl~~~~~~~~~~~~~~~~~~g~----------------------------~~~~v~~~~~~------- 123 (411)
T 3nnk_A 88 ---------GDKVLVPVFGRFGHLLCEIARRCRA----------------------------EVHTIEVPWGE------- 123 (411)
T ss_dssp ---------TCEEEEEECSHHHHHHHHHHHHTTC----------------------------EEEEEECCTTC-------
T ss_pred ---------CCEEEEecCCchHHHHHHHHHHcCC----------------------------eEEEEecCCCC-------
Confidence 2679999999998532211 11110 01112221100
Q ss_pred cccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCC
Q 002941 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (863)
Q Consensus 576 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gi 655 (863)
.-| .+.+++.+.+ .++.+|++++. ++..|.+.+ +++|.++|++||+
T Consensus 124 --------------~~d--------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~ 169 (411)
T 3nnk_A 124 --------------VFT--------PDQVEDAVKR-------IRPRLLLTVQG-DTSTTMLQP----LAELGEICRRYDA 169 (411)
T ss_dssp --------------CCC--------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHHTC
T ss_pred --------------CCC--------HHHHHHHHhh-------CCCeEEEEeCC-CCCcceecc----HHHHHHHHHHcCC
Confidence 011 2456666642 25678888987 999998876 8899999999999
Q ss_pred eEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHHhhhcCCccceeec-----------
Q 002941 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLH----------- 722 (863)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~----------- 722 (863)
++|+||+++ +|.. .+..+.++ +|++++ +|+++|+ .++|++++++++++.+.......+.++
T Consensus 170 ~li~Dea~~-~~~~--~~~~~~~~--~d~~~~s~~K~l~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~ 243 (411)
T 3nnk_A 170 LFYTDATAS-LGGN--PLETDVWG--LDAVSAGMQKCLGGP-SGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEM 243 (411)
T ss_dssp EEEEECTTT-BTTB--CCCTTTTT--CSEEECCSTTTTCCC-SSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCC
T ss_pred EEEEECCcc-cCCc--ccchhccC--CcEEEecCccccCCC-CceEEEEECHHHHHHHhhcccccccccccccccccCCC
Confidence 999999985 4322 23333333 677765 5998887 689999999999988764220011111
Q ss_pred -------------------ccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE-ecc
Q 002941 723 -------------------GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR-VVA 782 (863)
Q Consensus 723 -------------------~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~-vrg 782 (863)
..+++.++.+++++.++++.+.+.+ .+++.+..+.+++.+.+.+.+. ....+.. ...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~ 320 (411)
T 3nnk_A 244 IYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEG-LDYGIARHKLHGDALVKGIQAM--GLETFGDLKHK 320 (411)
T ss_dssp CSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHT--TCCBCSCGGGB
T ss_pred CcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHc--CCEeCCCcccc
Confidence 1223457888888889998875432 2334444444555444444332 2221111 123
Q ss_pred cceEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec-----CCEEEEec-CCCCcHHHHHHHHHHHHHHHHHH
Q 002941 783 LGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMC-GPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 783 ~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-----g~~lr~~p-pl~~t~eeid~~v~~L~~~l~~l 853 (863)
.+.++.+.+.+.. ...++.+.|+++ ||.+++. ++.+|+.+ +..++++++++++++|+++++++
T Consensus 321 ~~~~~~~~~~~~~--------~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 390 (411)
T 3nnk_A 321 MNNVLGVVIPQGI--------NGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYL 390 (411)
T ss_dssp CSSEEEEECCTTC--------CHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred cccEEEEECCCCC--------CHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHc
Confidence 5677778775321 156788888887 9999873 47999997 77789999999999999998765
No 125
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.80 E-value=3e-19 Score=197.61 Aligned_cols=332 Identities=11% Similarity=0.066 Sum_probs=214.0
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc---cc---cCCCCCChHHHHHHHH-HHhhcCCCCCCeEEEeCChhh
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG---HV---MFPENVYEPALECAEL-LLQGVGKGWASRAYFSDNGST 472 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~---~~---~~~~~~~~~~~eLae~-L~~~~p~~~~~~v~f~~SGSe 472 (863)
.|||+.. +.++ .+|++.+|+.+++.... +. .......+...+|.++ |+++++. +.++|+++|++
T Consensus 10 i~ld~~~-----~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~---~~v~~~~g~t~ 80 (371)
T 2e7j_A 10 INIDPLQ-----TGGK-LTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGC---DVARVTNGARE 80 (371)
T ss_dssp EECCHHH-----HTCC-CCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTS---SEEEEESSHHH
T ss_pred EEecccc-----cCCC-CCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCC---CEEEEeCChHH
Confidence 5666532 3344 57999999999887642 10 1112345678899999 9999884 38999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCc
Q 002941 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (863)
Q Consensus 473 AvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (863)
|++.+++.+++ .| .+|++...+||+....+ ...|..
T Consensus 81 a~~~~~~~~~~---------~g------------d~vl~~~~~~~~~~~~~-~~~g~~---------------------- 116 (371)
T 2e7j_A 81 AKFAVMHSLAK---------KD------------AWVVMDENCHYSSYVAA-ERAGLN---------------------- 116 (371)
T ss_dssp HHHHHHHHHCC---------TT------------CEEEEETTCCHHHHHHH-HHTTCE----------------------
T ss_pred HHHHHHHHHhC---------CC------------CEEEEccCcchHHHHHH-HHcCCe----------------------
Confidence 99999997721 11 57999999999876552 221100
Q ss_pred ccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 002941 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (863)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~ 632 (863)
+..++.|... +..-| .+.+++.+.+. ...+++.+|++++. ++.
T Consensus 117 ------~~~v~~~~~~-------------------~~~~d--------~~~l~~~l~~~---~~~~~~~~v~~~~~-~np 159 (371)
T 2e7j_A 117 ------IALVPKTDYP-------------------DYAIT--------PENFAQTIEET---KKRGEVVLALITYP-DGN 159 (371)
T ss_dssp ------EEEECCCCTT-------------------TCCCC--------HHHHHHHHHHH---TTTSCEEEEEEESS-CTT
T ss_pred ------EEEeecccCC-------------------CCCcC--------HHHHHHHHHhh---cccCCeEEEEEECC-CCC
Confidence 0111110000 00011 24455666421 00146788999997 999
Q ss_pred CCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCCCCCCceeeeccHHHHHh
Q 002941 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDS 710 (863)
Q Consensus 633 gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLggG~~Pigav~~~~~i~~~ 710 (863)
.|.+.+ +++|.++|++||+++|+||+++. |..+ +....++ +|+++ ++|+++++ .++|++++++++++.
T Consensus 160 tG~~~~----~~~i~~~~~~~~~~li~D~a~~~-~~~~--~~~~~~~--~di~~~s~sK~~~~~-~~~G~~~~~~~~~~~ 229 (371)
T 2e7j_A 160 YGNLPD----VKKIAKVCSEYDVPLLVNGAYAI-GRMP--VSLKEIG--ADFIVGSGHKSMAAS-GPIGVMGMKEEWAEI 229 (371)
T ss_dssp TCCCCC----HHHHHHHHHTTTCCEEEECTTTB-TTBC--CCHHHHT--CSEEEEEHHHHSSCC-SSCEEEEECTTTTTT
T ss_pred CcccCC----HHHHHHHHHHcCCeEEEECcccc-CCCC--CChhhcC--CCEEEecCCcCCCCC-CCcEEEEEechhhhh
Confidence 998876 69999999999999999999964 4443 2233444 68775 59999988 599999999988776
Q ss_pred -hhcCCccceeeccc-----CCCccHHHHHHHHHHHHHhcChhhHHhH--HHHHHHHHHHHHHHHHHHHhcCCCeeEecc
Q 002941 711 -FVGDSKLKALLHGH-----SYSAHALGCAAAAKSIKWFKDPQTNHNI--IPERRILRELWDLELIQQISSHRTVQRVVA 782 (863)
Q Consensus 711 -l~~~~~~~~~~~~~-----T~~~~pla~AAalAaL~~l~~~~l~~~l--~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg 782 (863)
+..... .... +++.++.+++++.++++.+++ ++.+++ .++.+++.+.| .+. ....+....+
T Consensus 230 ~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L----~~~--~~~~~~~~~~ 298 (371)
T 2e7j_A 230 VLRRSEK----YKNKEVELLGCTARGATIITLMASFPHVRE-RIKRWDEEVEKARRFAAEM----EKL--GIKQLGDNPH 298 (371)
T ss_dssp TTCBCSS----CTTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHHHHHHHHHHHHH----HHT--TCEEESSSSC
T ss_pred hcccccc----CcccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH----HHc--CcEEecCCCc
Confidence 653210 0122 566788899999999988755 555566 55555555433 221 2221211112
Q ss_pred cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe--------c--CCEEE-EecCCC-CcHHHHHHHHHHHHHHH
Q 002941 783 LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP--------L--GNVIY-LMCGPC-SSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 783 ~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p--------~--g~~lr-~~ppl~-~t~eeid~~v~~L~~~l 850 (863)
.|.++.+.+. . ...+.+.|.++||++.| . .+.+| +.++.. ++++++++++++|++++
T Consensus 299 ~~~~~~~~~~--~---------~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~ 367 (371)
T 2e7j_A 299 NHDLMFFHAE--V---------LYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEII 367 (371)
T ss_dssp CSSEEEEECH--H---------HHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cCceEEEECC--C---------HHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHH
Confidence 4778888775 1 45678888899998876 1 35678 877776 89999999999999887
Q ss_pred HHH
Q 002941 851 EEF 853 (863)
Q Consensus 851 ~~l 853 (863)
+++
T Consensus 368 ~~~ 370 (371)
T 2e7j_A 368 EKY 370 (371)
T ss_dssp HHC
T ss_pred Hhc
Confidence 653
No 126
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.80 E-value=4.5e-18 Score=191.38 Aligned_cols=331 Identities=13% Similarity=0.051 Sum_probs=203.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc-CCCCC-ChHHHHHHHHHHhhc--C-CCCCCeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENV-YEPALECAELLLQGV--G-KGWASRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~-~~~~~-~~~~~eLae~L~~~~--p-~~~~~~v~f~~SGSeAv 474 (863)
+++|+.++.. .++ .+|.|.+|+.+++++..... ...+. .....+|.++|++++ + .. .+.++|++++++|+
T Consensus 34 ~~i~l~~~~~--~~~--~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~-~~~v~~~~G~~~al 108 (400)
T 3asa_A 34 TVINLSIGDT--TQP--LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVD-AKEIFISDGAKVDL 108 (400)
T ss_dssp CCEECSSCCC--CCC--CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSC-GGGEEEESCHHHHH
T ss_pred ceEeccCCCC--CCC--CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCC-HHHEEEccChHHHH
Confidence 6777766542 333 47999999999998754321 11232 234567888888873 4 22 36899999999999
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccc
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (863)
+.++++. + .| .+|++...+||+....+. ..|..
T Consensus 109 ~~~~~~~-~---------~g------------d~Vl~~~p~y~~~~~~~~-~~g~~------------------------ 141 (400)
T 3asa_A 109 FRLLSFF-G---------PN------------QTVAIQDPSYPAYLDIAR-LTGAK------------------------ 141 (400)
T ss_dssp HHHHHHH-C---------SS------------CEEEEEESCCHHHHHHHH-HTTCS------------------------
T ss_pred HHHHHHc-C---------CC------------CEEEECCCCcHHHHHHHH-HcCCc------------------------
Confidence 9865432 1 12 579999999999754322 11100
Q ss_pred ccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 002941 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (863)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG 634 (863)
.+..++..... .+. .+ +++ . .++.+|+++.. ++..|
T Consensus 142 ---~~~~~~~~~~~-----------------~~~--~~---------------l~~----~--~~~~~v~l~~p-~nptG 177 (400)
T 3asa_A 142 ---EIIALPCLQEN-----------------AFF--PE---------------FPE----D--THIDILCLCSP-NNPTG 177 (400)
T ss_dssp ---EEEEEECCGGG-----------------TTC--CC---------------CCT----T--CCCSEEEEESS-CTTTC
T ss_pred ---ceEecccchhc-----------------Ccc--cC---------------hhh----c--cCccEEEEeCC-CCCCC
Confidence 00011111000 000 00 111 0 23456666554 88888
Q ss_pred ceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhcCCCCc----EEEeccccC-CCCCCceeeeccHHH-
Q 002941 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPD----IACYGKLLT-GGVIPLAATLATNAV- 707 (863)
Q Consensus 635 ~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PD----ivt~sKgLg-gG~~Pigav~~~~~i- 707 (863)
.+ +|.+.+++|.++|++||+++|+||++++|+..|. ......++..+| +.++||.++ .| +++|++++++++
T Consensus 178 ~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-lriG~~~~~~~~~ 255 (400)
T 3asa_A 178 TV-LNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAG-IRLGWTVIPQELT 255 (400)
T ss_dssp CC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTT-CCCEEEECCTTCB
T ss_pred Cc-CCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcc-hheeEEeeChhhc
Confidence 65 5789999999999999999999999998977664 222323322244 558899998 88 899999999887
Q ss_pred ------HHhhhcCCccceeecccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 002941 708 ------FDSFVGDSKLKALLHGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV 780 (863)
Q Consensus 708 ------~~~l~~~~~~~~~~~~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v 780 (863)
++.+... .+..++ +.++++++++.++|+.. +.+++.+..+..++.+.+.+. +.+ +.-+
T Consensus 256 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~l~~~L~----~~g-~~~~ 320 (400)
T 3asa_A 256 YADGHFVIQDWER------FLSTTFNGASIPAQEAGVAGLSIL----PQLEAIHYYRENSDLLRKALL----ATG-FEVF 320 (400)
T ss_dssp CTTSCBHHHHHHH------HHHHHCCCCCHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHH----HTT-CEEE
T ss_pred cchhhhHHHHHHH------HhccCccCCChHHHHHHHHHhCcH----HHHHHHHHHHHHHHHHHHHHH----HCC-Ceee
Confidence 4544320 123445 57899999999888754 223334444444444433332 222 2223
Q ss_pred cc-cceEEEEE-EccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 781 VA-LGTLCAIE-LQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 781 rg-~Gl~~~ie-l~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.+ .|.++.++ +.... ....+...|++ +||++.|+ .+.+|++ +..+++++++++++|.+++
T Consensus 321 ~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~ 390 (400)
T 3asa_A 321 GGEHAPYLWVKPTQANI--------SDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFS--SLGKREDILAACERLQMAP 390 (400)
T ss_dssp ECSSSSEEEEECCCTTC--------CTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEE--CCSCHHHHHHHHHHHHC--
T ss_pred CCCCceEEEEeccCCCC--------CHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEE--eeCCHHHHHHHHHHHHHHH
Confidence 33 46788887 54221 02246666765 59999874 3679987 5789999999999999888
Q ss_pred HHH
Q 002941 851 EEF 853 (863)
Q Consensus 851 ~~l 853 (863)
++.
T Consensus 391 ~~~ 393 (400)
T 3asa_A 391 ALQ 393 (400)
T ss_dssp ---
T ss_pred Hhh
Confidence 654
No 127
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.80 E-value=8.6e-18 Score=188.32 Aligned_cols=283 Identities=11% Similarity=0.069 Sum_probs=188.2
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|.++|+++++. +..++++||++|++.+++.+.+ .| .+|++...+||+
T Consensus 48 ~~~~~~~~~l~~~la~~~~~---~~~i~~~sGt~a~~~~~~~~~~---------~g------------~~vl~~~~~~~~ 103 (386)
T 1cs1_A 48 RRGNPTRDVVQRALAELEGG---AGAVLTNTGMSAIHLVTTVFLK---------PG------------DLLVAPHDCYGG 103 (386)
T ss_dssp TTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHCC---------TT------------CEEEEETTCCHH
T ss_pred CCCCccHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHhC---------CC------------CEEEEecCCcHh
Confidence 35677888999999999984 3556668899999999987621 11 579999999988
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
........... . + . .+..++. .|
T Consensus 104 ~~~~~~~~~~~---~-----------g----~-------~~~~~~~--------------------------~d------ 126 (386)
T 1cs1_A 104 SYRLFDSLAKR---G-----------C----Y-------RVLFVDQ--------------------------GD------ 126 (386)
T ss_dssp HHHHHHHHHTT---T-----------S----C-------EEEEECT--------------------------TC------
T ss_pred HHHHHHHHHHh---c-----------C----C-------EEEEeCC--------------------------CC------
Confidence 43211000000 0 0 0 0001110 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.++ +++++|+++++ ++.+|.+.+ +++|.++|++||+++|+||+|+++... ... .+
T Consensus 127 --~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~-~~~---~~ 187 (386)
T 1cs1_A 127 --EQALRAALA--------EKPKLVLVESP-SNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSPALQ-NPL---AL 187 (386)
T ss_dssp --HHHHHHHHH--------TCCSEEEEECS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTTTC-CGG---GG
T ss_pred --HHHHHHhhc--------cCCcEEEEeCC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccccC-Ccc---cc
Confidence 245666664 24678999997 999998875 899999999999999999999877433 221 23
Q ss_pred CCCCcEE--EeccccCCCCCCc-eeeeccH-HHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 679 GCVPDIA--CYGKLLTGGVIPL-AATLATN-AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 679 gv~PDiv--t~sKgLggG~~Pi-gav~~~~-~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
.+|++ +++|+++++..++ |++++++ ++++.+.. +.++++++.+|+++++++++++.+. +..+++.+
T Consensus 188 --~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~------~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~ 257 (386)
T 1cs1_A 188 --GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAW------WANNIGVTGGAFDSYLLLRGLRTLV--PRMELAQR 257 (386)
T ss_dssp --TCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH------HHHHHTCBCCHHHHHHHHHHHTTHH--HHHHHHHH
T ss_pred --CceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHH------HHHhcCCCCCHHHHHHHHhcccHHH--HHHHHHHH
Confidence 35666 6899998764566 8888876 78887753 2344567789999998888887542 22344444
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeE------------------ecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCC
Q 002941 755 ERRILRELWDLELIQQISSHRTVQR------------------VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDG 816 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~------------------vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~G 816 (863)
+.+.+.+. +.+++.+.. .++.|.++.+++... ...+.+.|.++|
T Consensus 258 ~~~~l~~~--------l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~g 319 (386)
T 1cs1_A 258 NAQAIVKY--------LQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD----------EQTLRRFLGGLS 319 (386)
T ss_dssp HHHHHHHH--------HTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC----------HHHHHHHHHTCS
T ss_pred HHHHHHHH--------HhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC----------HHHHHHHHHhCC
Confidence 44444433 333333322 256699999988532 345677788899
Q ss_pred cEEEe--c-----------------------------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 817 VYMRP--L-----------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 817 V~~~p--~-----------------------------g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
|+++. . .+.+|+++++..++++++.+.++|+++
T Consensus 320 i~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 320 LFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp SSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 99873 1 278999999877777777777766543
No 128
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.80 E-value=5e-18 Score=192.79 Aligned_cols=340 Identities=11% Similarity=0.055 Sum_probs=204.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc-CCCCC-ChHHHHHHHHHHhhc----CCCCCCeEEEeCChhhH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENV-YEPALECAELLLQGV----GKGWASRAYFSDNGSTA 473 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~-~~~~~-~~~~~eLae~L~~~~----p~~~~~~v~f~~SGSeA 473 (863)
.++|+.+|... + ..+|.|.+|+.++++++.... ..++. .....+|.++|++++ +.. .+.++|++++++|
T Consensus 57 ~~i~l~~~~~~--~--~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~-~~~i~~t~G~~~a 131 (432)
T 3ei9_A 57 QVISLGIGDTT--E--PIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIG-DDDVFVSDGAKCD 131 (432)
T ss_dssp CCEECSSCCCC--S--CCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCC-GGGEEEESCHHHH
T ss_pred CeEEccCCCCC--C--CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCC-cceEEECCChHHH
Confidence 67887775222 2 268999999999998765321 11222 233466777777764 322 3689999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcc
Q 002941 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (863)
Q Consensus 474 vE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (863)
+..+..++ + .| ..||+...+||+....+...+....+.. .+..
T Consensus 132 l~~l~~l~-~---------~g------------d~Vl~~~p~y~~~~~~~~~~g~~~~~~~---------------~~~~ 174 (432)
T 3ei9_A 132 ISRLQVMF-G---------SN------------VTIAVQDPSYPAYVDSSVIMGQTGQFNT---------------DVQK 174 (432)
T ss_dssp HHHHHHHH-C---------TT------------CCEEEEESCCTHHHHHHHHHTCSCCEET---------------TTTE
T ss_pred HHHHHHHc-C---------CC------------CEEEEeCCCCHHHHHHHHHcCCcccccc---------------cccc
Confidence 98632222 1 12 5799999999997655443332111100 0000
Q ss_pred cccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
+ ..+..++.... .+ . ...+++ .++..+.+++.| ++..
T Consensus 175 ~--~~~~~~~~~~~-----------------------~~---~--------~~~l~~-----~~~~~~v~l~~p--~NPt 211 (432)
T 3ei9_A 175 Y--GNIEYMRCTPE-----------------------NG---F--------FPDLST-----VGRTDIIFFCSP--NNPT 211 (432)
T ss_dssp E--TTCEEEECCGG-----------------------GT---T--------SCCGGG-----CCCCSEEEEESS--CTTT
T ss_pred c--CceEEeccCcc-----------------------cC---C--------cCChhh-----CCCCCEEEEeCC--CCCC
Confidence 0 00111111100 00 0 000111 122234444555 7888
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC----CCCcEEEeccccC-CCCCCceeeeccHHH-
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG----CVPDIACYGKLLT-GGVIPLAATLATNAV- 707 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g----v~PDivt~sKgLg-gG~~Pigav~~~~~i- 707 (863)
|.+ ++.+.+++|.++|++||++||+||+|++|...+.......+. ....+.++||.++ .| +++|++++++++
T Consensus 212 G~~-~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~r~G~~~~~~~~~ 289 (432)
T 3ei9_A 212 GAA-ATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTG-VRLGWTVIPKKLL 289 (432)
T ss_dssp CCC-CCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTT-TCCEEEECCTTCB
T ss_pred CCC-CCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcc-cceEEEEEChHHh
Confidence 864 477889999999999999999999999886555433333222 2223458899998 78 899999999887
Q ss_pred -------HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 002941 708 -------FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV 780 (863)
Q Consensus 708 -------~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v 780 (863)
.+.+.. .....+++.++++++++.++++.. ..++.+++.+..+..++.+.+.+ .+.+ +..+
T Consensus 290 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L----~~~g-~~~~ 357 (432)
T 3ei9_A 290 YSDGFPVAKDFNR------IICTCFNGASNISQAGALACLTPE-GLEAMHKVIGFYKENTNIIIDTF----TSLG-YDVY 357 (432)
T ss_dssp CTTSCBHHHHHHH------HHHHSCCCSCHHHHHHHHHHSSHH-HHHHHHHHHHHHHHHHHHHHHHH----HHTT-CCEE
T ss_pred hcchHHHHHHHHH------HhccccCCCCHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH----HHCC-ceec
Confidence 555542 112345568899999998887531 11233444444444444443333 3332 2223
Q ss_pred c-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 781 V-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 781 r-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
. ..|.++.+.+.... ..+++..|++ +||++.|. .+.+|++ +..++++|++++++|++.
T Consensus 358 ~~~~~~~~~~~~~~~~---------~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~l~~~l~rl~~~ 424 (432)
T 3ei9_A 358 GGKNAPYVWVHFPNQS---------SWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVS--AFGHRENILEACRRFKQL 424 (432)
T ss_dssp ECSSSSEEEEECTTSC---------HHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEECCCCC---------HHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEE--ecCCHHHHHHHHHHHHHH
Confidence 3 35677778776322 4567777775 59999873 3789987 467999999999888764
No 129
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.80 E-value=6.8e-18 Score=187.12 Aligned_cols=335 Identities=13% Similarity=0.032 Sum_probs=210.6
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhc-ccccCCC----CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPE----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~-~~~~~~~----~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAv 474 (863)
.|||..+ .|+ .+|+|.+|+.+++++. +...... ...+...+|.++|+++++.+ .+.++|++||++|+
T Consensus 3 ~yld~~~------~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~ 74 (384)
T 1eg5_A 3 VYFDNNA------TTR-VDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVS-PSEIFFTSCATESI 74 (384)
T ss_dssp EECBTTT------CCC-CCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSC-GGGEEEESCHHHHH
T ss_pred EEEecCc------cCC-CCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCC-CCeEEEECCHHHHH
Confidence 5777554 245 6899999999999862 1111000 01244578999999998743 35899999999999
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccce--ecCCCCCCCCCcCCcccCCCcccCCCc
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME--AQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals--~t~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (863)
+.+++.+. .++.. .| .+||+...+||+....... ..|..
T Consensus 75 ~~~~~~~~-~~~~~----~g------------d~vl~~~~~~~~~~~~~~~~~~~g~~---------------------- 115 (384)
T 1eg5_A 75 NWILKTVA-ETFEK----RK------------RTIITTPIEHKAVLETMKYLSMKGFK---------------------- 115 (384)
T ss_dssp HHHHHHHH-HHTTT----TC------------CEEEECTTSCHHHHHHHHHHHHTTCE----------------------
T ss_pred HHHHHhhh-hhccC----CC------------CEEEECCCCchHHHHHHHHHHhcCCE----------------------
Confidence 99999883 21100 12 5799999999886443321 11100
Q ss_pred ccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 002941 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (863)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~ 632 (863)
+..++....+ ..| .+.+++.+. .++.+|++++. ++.
T Consensus 116 ------~~~v~~~~~~---------------------~~d--------~~~l~~~i~--------~~~~~v~~~~~-~np 151 (384)
T 1eg5_A 116 ------VKYVPVDSRG---------------------VVK--------LEELEKLVD--------EDTFLVSIMAA-NNE 151 (384)
T ss_dssp ------EEECCBCTTS---------------------CBC--------HHHHHHHCC--------TTEEEEEEESB-CTT
T ss_pred ------EEEEccCCCC---------------------ccC--------HHHHHHHhC--------CCCeEEEEECC-CCC
Confidence 0001110000 011 234555552 25778888886 899
Q ss_pred CCceeCCHHHHHHHHHHHHHcC--CeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHH-
Q 002941 633 GGMHMVDPLFQRILVKECQNRK--IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAV- 707 (863)
Q Consensus 633 gG~~~pp~~fL~~Lrelc~~~g--ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i- 707 (863)
.|.+.+ +++|.++|++|| +++|+||+++ ||... +.... ..+|++++| |.++- ..+|++++++++
T Consensus 152 tG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~~--~~~~~--~~~di~~~s~sK~~g~--~G~G~~~~~~~~~ 220 (384)
T 1eg5_A 152 VGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIP--FSLEK--LEVDYASFSAHKFHGP--KGVGITYIRKGVP 220 (384)
T ss_dssp TCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSC--CCCTT--TCCSEEEEEGGGGTSC--TTCEEEEECTTSC
T ss_pred cccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCcc--cCchh--cCCCEEEecHHHhcCC--CceEEEEEcCCCc
Confidence 998877 799999999999 9999999995 76432 22222 257999877 97542 126899998875
Q ss_pred -HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe---cc-
Q 002941 708 -FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV---VA- 782 (863)
Q Consensus 708 -~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v---rg- 782 (863)
...+..... .....+++.++++++++.++|+.+++ ..+++.+..+..++.+.+.+ .+ +.+.-+ .+
T Consensus 221 ~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~~l~~~L----~~-~g~~~~~~~~~~ 290 (384)
T 1eg5_A 221 IRPLIHGGGQ---ERGLRSGTQNVPGIVGAARAMEIAVE--ELSEAAKHMEKLRSKLVSGL----MN-LGAHIITPLEIS 290 (384)
T ss_dssp CCCSBCSSCT---TTTTBCSCCCHHHHHHHHHHHHHHHH--THHHHHHHHHHHHHHHHHHH----HT-TTCEECSCTTSB
T ss_pred cccccccCcc---cccccCCCCChHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHh----CC-CCeEEeCCcccC
Confidence 222211000 00124567899999999999987532 23444444445555443333 22 222111 11
Q ss_pred cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec------------------------CCEEEEecCCCCcHHH
Q 002941 783 LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEV 838 (863)
Q Consensus 783 ~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~------------------------g~~lr~~ppl~~t~ee 838 (863)
.+.++.+.+...+ ...+.+.|.++||++.+. .+.+|+.+...+++++
T Consensus 291 ~~~~~~~~~~~~~---------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~ 361 (384)
T 1eg5_A 291 LPNTLSVSFPNIR---------GSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEE 361 (384)
T ss_dssp CTTEEEEECTTCC---------HHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHH
T ss_pred CCCEEEEEeCCCC---------HHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHH
Confidence 3566777665321 456888899999999872 2579998877789999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002941 839 CSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 839 id~~v~~L~~~l~~l~~ 855 (863)
+++++++|+++++++.+
T Consensus 362 i~~~~~~l~~~~~~~~~ 378 (384)
T 1eg5_A 362 VDYFLKKIEEILSFLDL 378 (384)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999887654
No 130
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.79 E-value=2.7e-18 Score=193.43 Aligned_cols=214 Identities=14% Similarity=0.060 Sum_probs=142.1
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchh---hhcCCCCcEEEeccccCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA---DLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~---e~~gv~PDivt~sKgLggG~ 695 (863)
++.+|++... ++..|.+. +.+.+++|.++|++||+++|+||+|..+ ..+..+.. ...+....+.++||.+..|
T Consensus 180 ~~~~v~~~~p-~NptG~~~-~~~~~~~l~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G- 255 (417)
T 3g7q_A 180 ETGMICVSRP-TNPTGNVI-TDEELMKLDRLANQHNIPLVIDNAYGVP-FPGIIFSEARPLWNPNIILCMSLSKLGLPG- 255 (417)
T ss_dssp TEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESGGGTCTT-
T ss_pred CceEEEECCC-CCCCCCcc-CHHHHHHHHHHHHHcCCEEEEeCCCccc-cccccccccccCCCCCEEEEEechhccCCC-
Confidence 4555665543 78888655 6677999999999999999999999532 22211110 0112222256899976677
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHh----HHHHHHHHHHHHHHHHHHHH
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN----IIPERRILRELWDLELIQQI 771 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~----l~~~~~~l~~~l~~~l~~~~ 771 (863)
+++|++++++++++.+.. ..+..+++.++++++++.+.|+.. ++.++ +.+..+..++.+.+.+.+.+
T Consensus 256 ~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 326 (417)
T 3g7q_A 256 SRCGIIIANDKTITAIAN------MNGIISLAPGGMGPAMMCEMIKRN---DLLRLSETVIKPFYYQRVQQTIAIIRRYL 326 (417)
T ss_dssp SCCEEEECCHHHHHHHHH------HHHHHCCCCCSHHHHHHHHHHHTT---CHHHHHHHTHHHHHHHHHHHHHHHHHHHC
T ss_pred cceEEEEeCHHHHHHHHH------hhcceeeCCCcHHHHHHHHHHcCc---chHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999998864 235567888999999998888742 22222 22222333333333333333
Q ss_pred hcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------------CCEEEEecCCCCcHH
Q 002941 772 SSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------------GNVIYLMCGPCSSPE 837 (863)
Q Consensus 772 ~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------------g~~lr~~ppl~~t~e 837 (863)
...+........|+++.+++.... .....+...|.++||++.|+ .+.+|+.++. +++
T Consensus 327 ~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~~ 397 (417)
T 3g7q_A 327 SEERCLIHKPEGAIFLWLWFKDLP-------ITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EPD 397 (417)
T ss_dssp CTTTCEEECCCBSSEEEEECTTCS-------SCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CHH
T ss_pred ccCCceeeCCCcceEEEEEcCCCC-------CCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC--CHH
Confidence 222222223456788888886421 01567888899999999873 2489998764 999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002941 838 VCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 838 eid~~v~~L~~~l~~l~ 854 (863)
+|++++++|.++++++.
T Consensus 398 ~i~~~~~~l~~~l~~~~ 414 (417)
T 3g7q_A 398 KIEAGVKILAEEIERAW 414 (417)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988764
No 131
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.79 E-value=2.2e-17 Score=192.45 Aligned_cols=333 Identities=10% Similarity=0.006 Sum_probs=199.0
Q ss_pred CcHHHHHHHHHHHHhcccccCCCC-CC----hHHHHHHHHHHhhcCCCCC--CeE--EEeCChhhHHHHHHHHHHHHHH-
Q 002941 417 LQIELARDMGYTAARFGHVMFPEN-VY----EPALECAELLLQGVGKGWA--SRA--YFSDNGSTAIEIALKMAFRKFS- 486 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~-~~----~~~~eLae~L~~~~p~~~~--~~v--~f~~SGSeAvE~ALklA~r~~~- 486 (863)
+++.+.+++.+++.+........+ .. ....+++++|+++++.+ . +.+ +|+++|++|++.|++.++ .+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~-~~~~~v~~~~t~ggt~a~~~al~a~~-~~g~ 185 (514)
T 3mad_A 108 GDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGD-AAGGTVCGTVTSGGTESLLLAMKTYR-DWAR 185 (514)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGG-GGTSCCEEEEESSHHHHHHHHHHHHH-HHHH
T ss_pred CCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCC-CccCCcceEEcCcHHHHHHHHHHHHH-HHhh
Confidence 568888888888876543321111 22 23345667778877632 1 366 999999999999999994 332
Q ss_pred hhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcc
Q 002941 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (863)
Q Consensus 487 ~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ 566 (863)
..+|. + +.+||+...+|++....+ ...|. .+..++...
T Consensus 186 ~~~g~--~-----------~d~Vi~~~~~~~~~~~~~-~~~G~----------------------------~v~~v~~~~ 223 (514)
T 3mad_A 186 ATKGI--T-----------APEAVVPVSAHAAFDKAA-QYFGI----------------------------KLVRTPLDA 223 (514)
T ss_dssp HHHCC--S-----------SCEEEEETTSCTHHHHHH-HHHTC----------------------------EEEEECBCT
T ss_pred hhcCC--C-----------CCeEEEeCccchHHHHHH-HHcCC----------------------------eeEEeeeCC
Confidence 11221 1 257888888887743222 22110 011122111
Q ss_pred hhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHH
Q 002941 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646 (863)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~L 646 (863)
.+ .-| .+.+++.+. +++++|++++. ++..|.+.+ +++|
T Consensus 224 ~~---------------------~~d--------~~~Le~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i 261 (514)
T 3mad_A 224 DY---------------------RAD--------VAAMREAIT--------PNTVVVAGSAP-GYPHGVVDP----IPEI 261 (514)
T ss_dssp TS---------------------CBC--------HHHHHHHCC--------TTEEEEEEETT-CTTTCCCCC----HHHH
T ss_pred CC---------------------CCC--------HHHHHHHhc--------cCCEEEEEeCC-CCCCccccC----HHHH
Confidence 00 011 245666553 25778888887 898998876 8999
Q ss_pred HHHHHHcCCeEEEecccccc-----cccCC---cchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHHhhhcCC-
Q 002941 647 VKECQNRKIPVIFDEVFTGF-----WRLGV---ETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDS- 715 (863)
Q Consensus 647 relc~~~gilLI~DEV~TGf-----GRtG~---~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~~l~~~~- 715 (863)
.++|++||++||+||+|+|| +++|. .+.....|+ |++++ +|.+.+| .++|+++++++.........
T Consensus 262 ~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~--d~~~~s~~K~l~~~-~~~g~~~~~~~~~~~~~~~~~ 338 (514)
T 3mad_A 262 AALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGV--TSVSADTHKYGYGA-KGTSVILYRRPDLLHYQYFIA 338 (514)
T ss_dssp HHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTC--CEEEECTTTTTCCC-SSCEEEEESSHHHHTTTCEEE
T ss_pred HHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCC--cEEEECchhccCCC-CCeEEEEEeCHHHhccccccc
Confidence 99999999999999999876 45565 455555565 66655 5998887 79999998877655422100
Q ss_pred -cc------ceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEE
Q 002941 716 -KL------KALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCA 788 (863)
Q Consensus 716 -~~------~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~ 788 (863)
.+ ....++.++..+.+++.+++ +.+.+.+ .+++.++...+.+++.+. +.+.+.+.-+.....++.
T Consensus 339 ~~~~~~~~~~~~~~gs~~~~~~~a~~aal---~~l~~~~-~~~~~~~~~~~~~~l~~~----L~~~~g~~~~~~~~~~~~ 410 (514)
T 3mad_A 339 ADWPGGLYFSPTFAGSRPGALSATAWAAM---LSLGEEG-YLDATRRILQAADRLKAG----VRAIPSLKILGDPLWVIA 410 (514)
T ss_dssp SSCTTCSEEESSSCSSCCHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHHHHHHH----HHTSTTCEESSCCSSEEE
T ss_pred cccCCCcccCCccCCCCchHHHHHHHHHH---HHHhHHH-HHHHHHHHHHHHHHHHHH----HhhCCCeEEeCCCeEEEE
Confidence 00 00112222333344444444 4443322 233333333444433323 334444332222233666
Q ss_pred EEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--CCEEEEecC-CCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 789 IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--GNVIYLMCG-PCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 789 iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--g~~lr~~pp-l~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
+...... ..++.+.|.++||++... ++.+|+.+. +.++++++++++++|+++++++.+
T Consensus 411 ~~~~~~~---------~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~ 471 (514)
T 3mad_A 411 VASDELN---------IYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA 471 (514)
T ss_dssp EECSSSC---------HHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCC---------HHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 6543221 567899999999988543 478999876 345679999999999999987653
No 132
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.79 E-value=9.8e-18 Score=188.75 Aligned_cols=315 Identities=10% Similarity=-0.005 Sum_probs=195.7
Q ss_pred cHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccC
Q 002941 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~ 497 (863)
.+.+.+++..+...........+.++...+|+++|+++.+. +.+++++||++|++.+++.+++ .|
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~---~~~i~~~sG~~a~~~~l~~~~~---------~g--- 103 (398)
T 2rfv_A 39 FDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERG---EAGLATASGISAITTTLLTLCQ---------QG--- 103 (398)
T ss_dssp CSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHCC---------TT---
T ss_pred cCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHhC---------CC---
Confidence 35566665532222222222334678899999999999873 5788889999999999987621 12
Q ss_pred CCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccc
Q 002941 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (863)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~ 577 (863)
.+||+...+||+.......+... . |...+.+|.
T Consensus 104 ---------d~vi~~~~~~~~~~~~~~~~~~~---~------------------------g~~~~~v~~----------- 136 (398)
T 2rfv_A 104 ---------DHIVSASAIYGCTHAFLSHSMPK---F------------------------GINVRFVDA----------- 136 (398)
T ss_dssp ---------CEEEEESSSCHHHHHHHHTHHHH---T------------------------TCEEEEECT-----------
T ss_pred ---------CEEEEcCCCcccHHHHHHHHHHH---c------------------------CCEEEEeCC-----------
Confidence 57999999988864332111000 0 000011110
Q ss_pred cccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeE
Q 002941 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (863)
Q Consensus 578 ~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilL 657 (863)
.| .+.+++.+. +++++|++|++ ++..|.+.+ +++|.++|++||+++
T Consensus 137 -------------~d--------~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~l 182 (398)
T 2rfv_A 137 -------------AK--------PEEIRAAMR--------PETKVVYIETP-ANPTLSLVD----IETVAGIAHQQGALL 182 (398)
T ss_dssp -------------TS--------HHHHHHHCC--------TTEEEEEEESS-BTTTTBCCC----HHHHHHHHHHTTCEE
T ss_pred -------------CC--------HHHHHHhcC--------CCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEE
Confidence 01 234555552 35789999997 899998875 999999999999999
Q ss_pred EEecccccccccCCcchhhhcCCCCcE--EEeccccCCCCCCc-eeeeccHHHHH-hhhcCCccceeeccc-CCCccHHH
Q 002941 658 IFDEVFTGFWRLGVETTADLLGCVPDI--ACYGKLLTGGVIPL-AATLATNAVFD-SFVGDSKLKALLHGH-SYSAHALG 732 (863)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PDi--vt~sKgLggG~~Pi-gav~~~~~i~~-~l~~~~~~~~~~~~~-T~~~~pla 732 (863)
|+||+++ .|..+... .++ +|+ .+++|.+++...|+ |++++++++++ .+.. +.+.. +++.+|++
T Consensus 183 i~De~~~-~~~~~~~~---~~~--~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 250 (398)
T 2rfv_A 183 VVDNTFM-SPYCQQPL---QLG--ADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFV------GLKDITGGCMSPFN 250 (398)
T ss_dssp EEECTTT-CTTTCCGG---GGT--CSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT------HHHHTTCCCCCHHH
T ss_pred EEECCCc-ccccCCch---hhC--CcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHH------HHHhCCCCCCCHHH
Confidence 9999996 33333322 234 566 47799997644788 99999998887 4542 22334 56789999
Q ss_pred HHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHH------HHHHhcCCCeeE----ecccceEEEEEEccCCcCCCCch
Q 002941 733 CAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL------IQQISSHRTVQR----VVALGTLCAIELQAAGCNAGYGS 802 (863)
Q Consensus 733 ~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l------~~~~~~~p~v~~----vrg~Gl~~~iel~~~~~~~~~~~ 802 (863)
++++.++|+.+. .+.++..++.+.+.+.+.+.. ...+.++|.+.- .++.|.++.+++....
T Consensus 251 ~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~------- 321 (398)
T 2rfv_A 251 AWLTLRGVKTLG--IRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGL------- 321 (398)
T ss_dssp HHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH-------
T ss_pred HHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCH-------
Confidence 999999997542 234455555555554332110 000111222111 1357889999886321
Q ss_pred HHHHHHHHHHHHCCcEEEec----------------------------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 803 LYAASLLKKLREDGVYMRPL----------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 803 ~~~~~l~~~l~e~GV~~~p~----------------------------g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
.....+...+...|+.+.++ .+.+|++++...++++|+.++++|+++
T Consensus 322 ~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 322 EAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp HHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 12344444554455554321 379999999989999999988888653
No 133
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.78 E-value=1.4e-17 Score=182.94 Aligned_cols=328 Identities=11% Similarity=0.022 Sum_probs=197.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCC-CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~-~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~AL 478 (863)
.++||.++ +.++ .+|+|.+|+.+++.. +. ..+ ..+...+++++|+++++. -..++|++||++|++.|+
T Consensus 8 ~~id~~~~----~~~~-~~~~v~~a~~~~~~~--~~--~~~~~~~~~~~l~~~la~~~g~--~~~v~~~~~gt~a~~~al 76 (356)
T 1v72_A 8 PALGFSSD----NIAG-ASPEVAQALVKHSSG--QA--GPYGTDELTAQVKRKFCEIFER--DVEVFLVPTGTAANALCL 76 (356)
T ss_dssp CCCBCSCG----GGCC-CCHHHHHHHHHTTSS--CC--CSTTCSHHHHHHHHHHHHHHTS--CCEEEEESCHHHHHHHHH
T ss_pred ceEeeccC----CccC-CCHHHHHHHHhhccC--cc--cccccchHHHHHHHHHHHHhCC--CCcEEEeCCccHHHHHHH
Confidence 68898874 2345 689999999988632 21 122 356778999999999883 235899999999999999
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcccc--ceec--CCCCCCCCCcCCcccCCCcccCCCccc
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA--MEAQ--APSPYTGFLQQPWYSGRGLFLDPPTVF 554 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~ga--ls~t--~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (863)
+.+++ +| ..||+ ...+|+.+..+ +... |..
T Consensus 77 ~~~~~---------~g------------d~vi~-~~~~~~~~~~~~~~~~~~~g~~------------------------ 110 (356)
T 1v72_A 77 SAMTP---------PW------------GNIYC-HPASHINNDECGAPEFFSNGAK------------------------ 110 (356)
T ss_dssp HTSCC---------TT------------EEEEE-CTTSHHHHSSTTHHHHHTTSCE------------------------
T ss_pred HHhcC---------CC------------CEEEE-cCccchhhhhchHHHHHhCCcE------------------------
Confidence 87621 11 34554 55667665543 3322 100
Q ss_pred ccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHH-HHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ-NLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~-~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
+..++.++ + .-| .+.+++ .+.+. ...++.++++|+++|. ++ +
T Consensus 111 ----~~~v~~~~-~---------------------~~d--------~~~l~~~~i~~~-~~~~~~~~~~v~~~~~-~~-t 153 (356)
T 1v72_A 111 ----LMTVDGPA-A---------------------KLD--------IVRLRERTREKV-GDVHTTQPACVSITQA-TE-V 153 (356)
T ss_dssp ----EEECCCGG-G---------------------CCC--------HHHHHHHTTSST-TCTTSCEEEEEEEESS-CT-T
T ss_pred ----EEEecCCC-C---------------------eEc--------HHHHHHHhhhcc-hhhccCCceEEEEEcC-CC-C
Confidence 00111110 0 011 234555 44310 0012236899999996 64 7
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEecccccccc--cCCcchhhhcC--CCCcEEE--eccccCCCCCCce--eeeccH
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR--LGVETTADLLG--CVPDIAC--YGKLLTGGVIPLA--ATLATN 705 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGR--tG~~~a~e~~g--v~PDivt--~sKgLggG~~Pig--av~~~~ 705 (863)
|. +++.+++++|.++|++||++||+||++..++. .|.. ...++ ...|+++ ++|+ | .|+| ++++++
T Consensus 154 G~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~---g-~~~G~g~~~~~~ 226 (356)
T 1v72_A 154 GS-IYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS--PAEMTWKAGVDALSFGATKN---G-VLAAEAIVLFNT 226 (356)
T ss_dssp SC-CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC--TTTTTGGGTCCEEEECCGGG---T-CSSCEEEEESSG
T ss_pred Cc-cCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC--HHHhhhhhcCCEEEEecccC---C-CcCccEEEEECH
Confidence 75 56889999999999999999999999964321 1211 11122 2457765 5787 3 4888 666789
Q ss_pred HHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-cccc
Q 002941 706 AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VALG 784 (863)
Q Consensus 706 ~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-rg~G 784 (863)
++++.+.... .+..+... .+..++.++++.++++.+ .++.++.+.+++.+ .+.+.+.+.+.-+ ...+
T Consensus 227 ~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~l----~~~L~~~~g~~~~~~~~~ 294 (356)
T 1v72_A 227 SLATEMSYRR-----KRAGHLSS--KMRFLSAQIDAYLTDDLW-LRNARKANAAAQRL----AQGLEGLGGVEVLGGTEA 294 (356)
T ss_dssp GGHHHHHHHH-----HHTTCCCS--STHHHHHHHHHHTSTTHH-HHHHHHHHHHHHHH----HHHHTTCTTEEEESCCCS
T ss_pred HHHhhHHHHh-----hccCchhh--hHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHH----HHHHhhCCCcEEccCCCc
Confidence 9888764210 01112111 122334455666655322 22333334444433 3334444444332 2344
Q ss_pred eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 785 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 785 l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.++.+.+. ..+.+.|.++||++.+. ++.+|+.+++.++++++++++++|++++++.
T Consensus 295 ~~~~~~~~-------------~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 295 NILFCRLD-------------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp SEEEEEEC-------------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred cEEEEEcC-------------HHHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 55555552 15788889999999853 4789999889999999999999999887654
No 134
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.78 E-value=8.6e-18 Score=189.58 Aligned_cols=347 Identities=9% Similarity=-0.012 Sum_probs=201.6
Q ss_pred eEEeeecccccccCCC-CCcHHHHHHHHHHHH--hcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDA-TLQIELARDMGYTAA--RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh-~~~p~V~~Ai~~q~~--~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ 476 (863)
.++|+..|.....-|+ ...|.|.+|+.+... ...+.. ..+..+...++++.+....+....+.++++++|++|++.
T Consensus 38 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~Y~~-~~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~al~~ 116 (413)
T 3t18_A 38 AVINAALGTLLDDKGKIIALPSVYDRLDEMDRSHIASYAP-IEGEKDYRKIVIDTLFGPYKPEGYISAIATPGGTGAIRS 116 (413)
T ss_dssp GCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHHHHSCCC-TTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHH
T ss_pred ceEeccccCccCCCCCcCChHHHHHHHHhcCcccccCcCC-CCCCHHHHHHHHHHHhcccCccccCcEEEcCccHHHHHH
Confidence 5777776654222221 135677777765322 122221 223345566777777665432112389999999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++...+ .| ..|++...+|++........+. .
T Consensus 117 ~~~~~~~---------~g------------d~Vl~~~p~~~~~~~~~~~~g~-~-------------------------- 148 (413)
T 3t18_A 117 AIFSYLD---------EG------------DPLICHDYYWAPYRKICEEFGR-N-------------------------- 148 (413)
T ss_dssp HHHHHCC---------SS------------CEEEEESSCCTHHHHHHHHHTC-E--------------------------
T ss_pred HHHHhcC---------CC------------CEEEECCCCcccHHHHHHHhCC-e--------------------------
Confidence 9986521 12 5799999888876543322211 0
Q ss_pred CceeeecCc-chhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCC
Q 002941 557 NSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGG 634 (863)
Q Consensus 557 ~~~~~~~~P-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvE-PViqg~gG 634 (863)
+..++.. ..+ .-| .+.+++.+.+ ...++..++++++ |. +++.|
T Consensus 149 --~~~~~~~~~~~---------------------~~d--------~~~l~~~l~~---~~~~~~~~~vi~~~p~-~NPtG 193 (413)
T 3t18_A 149 --FKTFEFFTDDF---------------------AFN--------IDVYKEAIDE---GIRDSDRIASLINSPG-NNPTG 193 (413)
T ss_dssp --EEEECCBCTTS---------------------SBC--------HHHHHHHHHH---HHHHCSEEEEEEECSS-CTTTC
T ss_pred --EEEeeccCCCC---------------------CcC--------HHHHHHHHHH---HhhcCCCEEEEEeCCC-CCCCC
Confidence 0111110 000 011 1345555532 0001334455555 74 78999
Q ss_pred ceeCCHHHHHHHHHHHH------HcCCeEEEecccccccccCCc---chhhhcCCCCcE--E---EeccccC-CCCCCce
Q 002941 635 MHMVDPLFQRILVKECQ------NRKIPVIFDEVFTGFWRLGVE---TTADLLGCVPDI--A---CYGKLLT-GGVIPLA 699 (863)
Q Consensus 635 ~~~pp~~fL~~Lrelc~------~~gilLI~DEV~TGfGRtG~~---~a~e~~gv~PDi--v---t~sKgLg-gG~~Pig 699 (863)
.+. +.+.+++|.++|+ +||++||+||++++|++.|.. +.....++.+|+ + +|||.++ .| +++|
T Consensus 194 ~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~riG 271 (413)
T 3t18_A 194 YSL-SDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVVVAFSMSKSHTAYG-LRSG 271 (413)
T ss_dssp CCC-CHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEEEEEEHHHHTTCGG-GCCE
T ss_pred CCC-CHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEEEEEecCccCCCcC-cCcE
Confidence 655 6677999999999 999999999999999988752 233334566663 2 7899998 78 8999
Q ss_pred eeec---cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHH---hHHHHHHHHHHHHHHHHHHHHhc
Q 002941 700 ATLA---TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNH---NIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 700 av~~---~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~---~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
++++ ++++++.+..... ....+.++..++++++++.++|+..+-.++.+ ++++..+..++.+.+. +.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----l~~ 345 (413)
T 3t18_A 272 AAVGISSSKEIIEEFEASLA--HSARCNWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKSRADVFVTA----AKE 345 (413)
T ss_dssp EEEEEESCHHHHHHHHHHHH--HHHHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
T ss_pred EEEEecCCHHHHHHHHHHHH--HhhhccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 9998 9999998764110 00111224567888887777665311000222 2223333333333222 333
Q ss_pred CCCeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 774 HRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 774 ~p~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.. +..+...| .++.+.+. . ...+++.|.++||++.|+++.+|+.++ ..+++++ +++|.+++++
T Consensus 346 ~g-~~~~~~~~~~~~~~~~~--~---------~~~~~~~l~~~gv~v~~g~~~iRis~~-~~~~~~~---l~~l~~~l~~ 409 (413)
T 3t18_A 346 NK-LTMIPYFGGFFTFIPTD--K---------AFDIVKDLEKENIFTIPSAKGIRVAIC-GVGEEKI---PKLVQRLAFY 409 (413)
T ss_dssp TT-CCCBCCCSSSCEEEECS--C---------HHHHHHHHHHTTEECEECSSEEEECTT-TSCGGGH---HHHHHHHHHH
T ss_pred cC-CCccCCCceEEEEeCCC--C---------HHHHHHHHHhCCEEEecCCCceEEEEe-eCCHHHH---HHHHHHHHHH
Confidence 32 22233344 34444432 1 456778899999999998899999866 4455555 7777777766
Q ss_pred HH
Q 002941 853 FD 854 (863)
Q Consensus 853 l~ 854 (863)
+.
T Consensus 410 ~~ 411 (413)
T 3t18_A 410 TN 411 (413)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 135
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.78 E-value=2.6e-17 Score=188.24 Aligned_cols=348 Identities=13% Similarity=-0.006 Sum_probs=206.1
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.|+|+.++.++..+ .+++.+|+. . +... -...+...+|.++|+++++ .++++|++||++|++.|++
T Consensus 43 ~ylD~~~~~~~~~~----~~~~~~a~~----~-~~~~--y~~~~~~~~l~~~la~~~~---~~~~~~~~~gt~a~~~al~ 108 (456)
T 2ez2_A 43 IYIDLLTDSGTNAM----SDKQWAGMM----M-GDEA--YAGSENFYHLERTVQELFG---FKHIVPTHQGRGAENLLSQ 108 (456)
T ss_dssp CSEECSCSSSCCCC----CHHHHHHHT----T-CCCC--SSSCHHHHHHHHHHHHHHC---CSEEEEESSHHHHHHHHHH
T ss_pred ceeeeccccCCccC----CHHHHHHhh----c-chhh--cccChhHHHHHHHHHHHhC---CCcEEEeCCcHHHHHHHHH
Confidence 79999876655443 366666654 1 1111 1135668899999999997 3689999999999999998
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.++ ++ .+ |+...+||+.+..++...|....
T Consensus 109 ~l~-----------~~-----------gd-i~~~~~~~~~~~~~~~~~G~~~~--------------------------- 138 (456)
T 2ez2_A 109 LAI-----------KP-----------GQ-YVAGNMYFTTTRYHQEKNGAVFV--------------------------- 138 (456)
T ss_dssp HHC-----------CT-----------TC-EEEESSCCHHHHHHHHHTTCEEE---------------------------
T ss_pred HhC-----------CC-----------CC-EeccccccchhHHHHHHcCCEEE---------------------------
Confidence 762 11 23 77888998986665554331100
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCCceeC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMV 638 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvE-PViqg~gG~~~p 638 (863)
.++...... +....+| +..-| .+.+++.+.+ .....+++|+++ |. ++.+|. +.
T Consensus 139 -~v~~~~~~~----~~~~~~~-------~~~~d--------~~~l~~~i~~----~t~~~~~~v~l~~p~-n~ptG~-~~ 192 (456)
T 2ez2_A 139 -DIVRDEAHD----AGLNIAF-------KGDID--------LKKLQKLIDE----KGAENIAYICLAVTV-NLAGGQ-PV 192 (456)
T ss_dssp -ECBCGGGGC----TTCCCSC-------TTCBC--------HHHHHHHHHH----HCGGGEEEEEEESSB-TTTTSB-CC
T ss_pred -Eeccccccc----ccccccc-------cCCCC--------HHHHHHHHHh----ccccceeEEEEeccC-CCCCCc-cC
Confidence 000000000 0000000 00012 2456666643 112457888888 54 557884 67
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeccccc----------ccccCCcch--hhhcCCCCcEEEec-cccCCCCCC-ceeeec-
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTG----------FWRLGVETT--ADLLGCVPDIACYG-KLLTGGVIP-LAATLA- 703 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TG----------fGRtG~~~a--~e~~gv~PDivt~s-KgLggG~~P-igav~~- 703 (863)
+.+++++|.++|++||++||+||+|+. +++.|..+. .+..+..+|++++| |.+++ .| .|++++
T Consensus 193 ~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~--~~~gG~~~~~ 270 (456)
T 2ez2_A 193 SMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL--VNIGGFLCMN 270 (456)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC--CSSCEEEEES
T ss_pred CHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCC--CCceeEEEEC
Confidence 899999999999999999999999974 345565331 11334558999884 66644 34 567777
Q ss_pred cHHHHHhhhcCCccceeec-ccCCCc-cHHHHHH-HHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 002941 704 TNAVFDSFVGDSKLKALLH-GHSYSA-HALGCAA-AAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV 780 (863)
Q Consensus 704 ~~~i~~~l~~~~~~~~~~~-~~T~~~-~pla~AA-alAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v 780 (863)
++++++.+..-. ...+ ..++.+ ++..+++ +.+.++.++ +++.++..++.+++.+.| .+ . ..+.+.
T Consensus 271 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~~~~~~~~~~l~~~L----~~-~-g~~~~~-- 338 (456)
T 2ez2_A 271 DDEMFSSAKELV---VVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIEHRVKQVRYLGDKL----KA-A-GVPIVE-- 338 (456)
T ss_dssp CHHHHHHHHHHH---HHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHH----HH-T-TCCBCS--
T ss_pred CHHHHHHHHHHH---hhccCcccccCcchhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHH----hc-C-CCcccc--
Confidence 688887664210 0011 122332 4444444 666666553 344555555554444433 22 1 233222
Q ss_pred cccceEEEEEEcc--CCcCCCCchHH-HHHHHHHH-HHCCcEEEec------------------CCEEEEecCCC-CcHH
Q 002941 781 VALGTLCAIELQA--AGCNAGYGSLY-AASLLKKL-REDGVYMRPL------------------GNVIYLMCGPC-SSPE 837 (863)
Q Consensus 781 rg~Gl~~~iel~~--~~~~~~~~~~~-~~~l~~~l-~e~GV~~~p~------------------g~~lr~~ppl~-~t~e 837 (863)
...|.++.+.+.. +... .... ...++..| .++||.+.+. .+.+|++++.. ++++
T Consensus 339 p~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e 415 (456)
T 2ez2_A 339 PVGGHAVFLDARRFCEHLT---QDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYA 415 (456)
T ss_dssp SCCSSEEEEEHHHHTTTSC---GGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHH
T ss_pred CCCceEEEEEhHHhcCCCC---hhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHH
Confidence 2236677777642 1100 1112 44557777 5889986431 26899998887 8999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002941 838 VCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 838 eid~~v~~L~~~l~~l~ 854 (863)
++++++++|++++++..
T Consensus 416 ~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 416 HMDVVADGIIKLYQHKE 432 (456)
T ss_dssp HHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999999987654
No 136
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.78 E-value=6.9e-18 Score=190.67 Aligned_cols=333 Identities=11% Similarity=0.043 Sum_probs=198.4
Q ss_pred CcHHHHHHHHHHHHh--cccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccc
Q 002941 417 LQIELARDMGYTAAR--FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~--~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tg 494 (863)
-.+.|.+|+.+.... ..+.. ..+..+...++++.+....+....+.++++++|++|++.+++.... .|
T Consensus 57 ~~~~v~~a~~~~~~~~~~~y~~-~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~---------~g 126 (418)
T 3rq1_A 57 FLKTVKEEYLSLSDSEHVGYAP-IAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTE---------PG 126 (418)
T ss_dssp CCHHHHHHHHTCCHHHHHSCCC-TTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHSC---------TT
T ss_pred ccHHHHHHHHHhcccccCCCCC-CCChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhcC---------CC
Confidence 457777777654332 12211 1123344555666665544321112899999999999999986521 12
Q ss_pred ccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCc-chhhhhhc
Q 002941 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIV 573 (863)
Q Consensus 495 r~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~~~~ 573 (863)
.+|++...+|++....+...+.. +..++.. ..+
T Consensus 127 ------------d~Vl~~~p~~~~~~~~~~~~g~~-----------------------------~~~v~~~~~~~----- 160 (418)
T 3rq1_A 127 ------------DEVLTADWYWGAYRVICSDTGRT-----------------------------LVTYSLFDEHN----- 160 (418)
T ss_dssp ------------CEEEEESSCCTHHHHHHHHTTCE-----------------------------EEEECSBCTTS-----
T ss_pred ------------CEEEECCCCchhHHHHHHHcCCE-----------------------------EEEEeeeCCCC-----
Confidence 57999999998875443322110 0011110 000
Q ss_pred cccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCceeCCHHHHHHHHHHHH-
Q 002941 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQ- 651 (863)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fL~~Lrelc~- 651 (863)
.-| .+.+++.+.+. ..++..+++++ .|. ++..|.+. +.+.+++|.++|+
T Consensus 161 ----------------~~d--------~~~l~~~l~~~---~~~~~~~~vi~~~p~-~NPtG~~~-~~~~l~~l~~~~~~ 211 (418)
T 3rq1_A 161 ----------------NFN--------HEAFQNRVNEL---AAKQTNVVVIFNTPG-NNPTGYSI-EDKDWDSILNFLKD 211 (418)
T ss_dssp ----------------SBC--------HHHHHHHHHHH---HHHCSEEEEEEECSS-CTTTCCCC-CHHHHHHHHHHHHH
T ss_pred ----------------CcC--------HHHHHHHHHHh---hccCCCEEEEEeCCC-CCCCCCCC-CHHHHHHHHHHHHH
Confidence 011 23445555320 00123445555 474 78888655 6677999999999
Q ss_pred -----HcCCeEEEecccccccccCC---cchhhhcCCCCcE---E--EeccccC-CCCCCceeeec---cHHHHHhhhcC
Q 002941 652 -----NRKIPVIFDEVFTGFWRLGV---ETTADLLGCVPDI---A--CYGKLLT-GGVIPLAATLA---TNAVFDSFVGD 714 (863)
Q Consensus 652 -----~~gilLI~DEV~TGfGRtG~---~~a~e~~gv~PDi---v--t~sKgLg-gG~~Pigav~~---~~~i~~~l~~~ 714 (863)
+||+++|+||++++|++.|. .+.....++.+|+ + +|||.++ .| +++|++++ ++++++.+...
T Consensus 212 ~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~ 290 (418)
T 3rq1_A 212 LVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYG-QRVGAMIGISDDEEIADEFFEV 290 (418)
T ss_dssp HHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCS-SCCEEEEEEESSHHHHHHHHHH
T ss_pred hhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcC-CcceEEEEEeCCHHHHHHHHHH
Confidence 89999999999999987764 2334444566773 2 6899997 67 89999999 99999887641
Q ss_pred CccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHH---hHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEEE
Q 002941 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNH---NIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAI 789 (863)
Q Consensus 715 ~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~---~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~i 789 (863)
.. ....+.++..++++++++.++|+..+. +.+.+ ++++..+..++.+.+.+.+. ..+. +... |.++.+
T Consensus 291 ~~--~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~---~~~~~~~~~~~ 363 (418)
T 3rq1_A 291 NK--STSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV--GLPM---LPYRGGFFITI 363 (418)
T ss_dssp HH--HHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCCC---CCCCSSSEEEE
T ss_pred HH--HHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCC---CCCCceEEEEc
Confidence 10 001112235778888887777652110 11222 22233333334333333322 2222 2333 444445
Q ss_pred EEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.+. . ..++++.|.++||++.|.++.+|++.. .++++++++++++|.++++++.
T Consensus 364 ~~~--~---------~~~~~~~l~~~gi~v~~g~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 364 PTD--S---------ANAICEELKKEHIYVIALANGIRIAAC-GIPKCQMTGLAEKIYNAMKSLG 416 (418)
T ss_dssp ECT--T---------HHHHHHHHHHTTEECEECSSEEEEEGG-GSCHHHHTTHHHHHHHHHHHTT
T ss_pred CCC--C---------HHHHHHHHHhCCEEEecCCCCeEEEEe-cCCHHHHHHHHHHHHHHHHHHh
Confidence 442 1 456788899999999998899999733 4699999999999999887653
No 137
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.78 E-value=1.6e-17 Score=185.41 Aligned_cols=337 Identities=12% Similarity=0.052 Sum_probs=212.1
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.|+|..+ .++ .+|.+.+|+.+++.. +.. ....+...++.++|+++++.+ .+.++|++||++|++.+++
T Consensus 10 ~yl~~~~------~~~-~~~~v~~a~~~~~~~--~~~--~~~~~~~~~l~~~la~~~g~~-~~~v~~t~g~t~a~~~~~~ 77 (392)
T 2z9v_A 10 VITLTAG------PVN-AYPEVLRGLGRTVLY--DYD--PAFQLLYEKVVDKAQKAMRLS-NKPVILHGEPVLGLEAAAA 77 (392)
T ss_dssp SEECSSS------CCC-CCHHHHHHTTSCCCC--TTS--HHHHHHHHHHHHHHHHHTTCS-SCCEEESSCTHHHHHHHHH
T ss_pred ceeecCC------CcC-CCHHHHHHHhccccc--ccc--HHHHHHHHHHHHHHHHHhCCC-CCEEEEeCCchHHHHHHHH
Confidence 5777442 234 679999998876643 110 012244678899999988753 3689999999999999998
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccce-ecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals-~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
.+++ .| .+|++...+||+.....+. ..|..
T Consensus 78 ~~~~---------~g------------d~Vl~~~~~~~~~~~~~~~~~~g~~---------------------------- 108 (392)
T 2z9v_A 78 SLIS---------PD------------DVVLNLASGVYGKGFGYWAKRYSPH---------------------------- 108 (392)
T ss_dssp HHCC---------TT------------CCEEEEESSHHHHHHHHHHHHHCSC----------------------------
T ss_pred HhcC---------CC------------CEEEEecCCcccHHHHHHHHHcCCc----------------------------
Confidence 7621 12 5699999999986311111 01100
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
+..++.+... ..| .+.+++.+++ ..++.+|++++. ++..|.+.+
T Consensus 109 ~~~v~~~~~~---------------------~~d--------~~~l~~~l~~------~~~~~~v~~~~~-~nptG~~~~ 152 (392)
T 2z9v_A 109 LLEIEVPYNE---------------------AID--------PQAVADMLKA------HPEITVVSVCHH-DTPSGTINP 152 (392)
T ss_dssp EEEEECCTTS---------------------CCC--------HHHHHHHHHH------CTTCCEEEEESE-EGGGTEECC
T ss_pred eEEeeCCCCC---------------------CCC--------HHHHHHHHhc------CCCCcEEEEecc-CCCCceecc
Confidence 0111111000 011 2456666642 124567888887 899998876
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHHhhhcCC-
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDS- 715 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~~l~~~~- 715 (863)
+++|.++|++||+++|+||+++ +|... +..+.+ .+|++++ +|+++|+ .++|++++++++++.+....
T Consensus 153 ----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~--~~d~~~~s~sK~~~~~-~g~G~l~~~~~~~~~l~~~~~ 222 (392)
T 2z9v_A 153 ----IDAIGALVSAHGAYLIVDAVSS-FGGMK--THPEDC--KADIYVTGPNKCLGAP-PGLTMMGVSERAWAKMKANPL 222 (392)
T ss_dssp ----HHHHHHHHHHTTCEEEEECTTT-BTTBS--CCGGGG--TCSEEEECSSSTTCCC-SCCEEEEECHHHHHHHHTCTT
T ss_pred ----HHHHHHHHHHcCCeEEEEcccc-cCCcc--cccccc--cceEEEecCcccccCC-CceeEEEECHHHHHHhhhccC
Confidence 8999999999999999999995 54332 223333 4788876 6998876 56799999999988775310
Q ss_pred ----cc-------cee--ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee-E-e
Q 002941 716 ----KL-------KAL--LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ-R-V 780 (863)
Q Consensus 716 ----~~-------~~~--~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~-~-v 780 (863)
.. ..+ ....+.+.++.+++++.++|+.+++.+ .+++.+..+.+++.+.+.+.+. ....+. . .
T Consensus 223 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~ 299 (392)
T 2z9v_A 223 APRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEG-PEAVWARHALTAKAMRAGVTAM--GLSVWAASDS 299 (392)
T ss_dssp SCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHT--TCCBSSSSGG
T ss_pred CCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHc--CCeeccCCcc
Confidence 00 000 011233457888888888898775432 2334444444455444444332 222211 1 0
Q ss_pred cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec-----CCEEEEecCC-CCcHHHHHHHHHHHHHHHHHH
Q 002941 781 VALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMCGP-CSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 781 rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-----g~~lr~~ppl-~~t~eeid~~v~~L~~~l~~l 853 (863)
...+.++.+.+.... ....+.+.|.++ ||++.+. .+.+|+.+.. .++++++++++++|+++++++
T Consensus 300 ~~~~~~~~~~~~~~~--------~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~ 371 (392)
T 2z9v_A 300 IASPTTTAVRTPDGV--------DEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAA 371 (392)
T ss_dssp GBCTTEEEEECCTTC--------CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred ccCCceEEEECCCCC--------CHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHc
Confidence 124677777774221 145788889987 9999874 4789998533 789999999999999998765
Q ss_pred H
Q 002941 854 D 854 (863)
Q Consensus 854 ~ 854 (863)
.
T Consensus 372 ~ 372 (392)
T 2z9v_A 372 G 372 (392)
T ss_dssp T
T ss_pred C
Confidence 3
No 138
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.77 E-value=1.2e-17 Score=183.20 Aligned_cols=310 Identities=13% Similarity=0.046 Sum_probs=197.7
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcC---CCCCCeEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG---KGWASRAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p---~~~~~~v~f~~SGSeAvE~ 476 (863)
+++|+.++.. .++ .+|++.+|+.+++.+.... .+......+|.++|+++++ .. .+.++|+++|++|++.
T Consensus 20 ~~i~l~~~~~--~~~--~~~~v~~a~~~~~~~~~~~---~y~~~~~~~lr~~la~~~~~~~~~-~~~v~~~~G~~~al~~ 91 (335)
T 1uu1_A 20 DKTYLALNEN--PFP--FPEDLVDEVFRRLNSDALR---IYYDSPDEELIEKILSYLDTDFLS-KNNVSVGNGADEIIYV 91 (335)
T ss_dssp CSEEESSCCC--SSC--CCHHHHHHHHHTCCGGGGG---SCCCSSCHHHHHHHHHHHTCSSCC-GGGEEEESSHHHHHHH
T ss_pred cceECCCCCC--CCC--CCHHHHHHHHHHhhhhhhh---cCCCCchHHHHHHHHHHcCCCCCC-HHHEEEcCChHHHHHH
Confidence 6788877653 355 4799999999987432211 1222235678888888776 22 4689999999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++.+ | .+|++. .+||+....+... |..
T Consensus 92 ~~~~~--------g----------------d~Vl~~-p~y~~~~~~~~~~-g~~-------------------------- 119 (335)
T 1uu1_A 92 MMLMF--------D----------------RSVFFP-PTYSCYRIFAKAV-GAK-------------------------- 119 (335)
T ss_dssp HHHHS--------S----------------EEEECS-SSCHHHHHHHHHH-TCE--------------------------
T ss_pred HHHHh--------C----------------CcEEEC-CCcHHHHHHHHHc-CCe--------------------------
Confidence 88754 2 468888 9999975433221 100
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
.+.+|... .+. -| ++++ ++.-+.+++.| ++..|.+
T Consensus 120 ----~~~v~~~~-----------------~~~--~d---------------~~~l-----~~~~~v~l~~p--~nptG~~ 154 (335)
T 1uu1_A 120 ----FLEVPLTK-----------------DLR--IP---------------EVNV-----GEGDVVFIPNP--NNPTGHV 154 (335)
T ss_dssp ----EEECCCCT-----------------TSC--CC---------------CCCC-----CTTEEEEEESS--CTTTCCC
T ss_pred ----EEEeccCC-----------------CCC--CC---------------HHHc-----CCCCEEEEeCC--CCCCCCC
Confidence 00111000 000 01 0110 12233444788 6888866
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch-hhhcCCCCcEEEeccccC-CCCCCceeeeccHHHHHhhhcC
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a-~e~~gv~PDivt~sKgLg-gG~~Pigav~~~~~i~~~l~~~ 714 (863)
. +.+.+++|.++| | ++|+||+|++|+. +.... .+.++....+.++||.+| .| +++|++++++++++.+...
T Consensus 155 ~-~~~~l~~l~~~~---~-~li~De~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~ 227 (335)
T 1uu1_A 155 F-EREEIERILKTG---A-FVALDEAYYEFHG-ESYVDFLKKYENLAVIRTFSKAFSLAA-QRVGYVVASEKFIDAYNRV 227 (335)
T ss_dssp C-CHHHHHHHHHTT---C-EEEEECTTHHHHC-CCCGGGGGTCSSEEEEEESTTTTTCGG-GCCEEEEECHHHHHHHHHH
T ss_pred C-CHHHHHHHHHhC---C-EEEEECcchhhcc-hhHHHHhhhCCCEEEEecchhhcCCcc-cCeEEEEeCHHHHHHHHHh
Confidence 5 555555555554 8 9999999988753 22221 222333334558899998 78 8999999999999887641
Q ss_pred CccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccC
Q 002941 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (863)
Q Consensus 715 ~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~ 794 (863)
..+|+.|+++++++.++|+. .++.++..+..+..++.+.+.+.+. ... -..+.|.++.+.+..
T Consensus 228 --------~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~--g~~---~~~~~~~~~~~~~~~- 290 (335)
T 1uu1_A 228 --------RLPFNVSYVSQMFAKVALDH---REIFEERTKFIVEERERMKSALREM--GYR---ITDSRGNFVFVFMEK- 290 (335)
T ss_dssp --------SCTTCSCHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHHHHHHHHH--TCC---BCCCCSSEEEEECCT-
T ss_pred --------cCCCCcCHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHC--CcE---EcCCCCeEEEEECCC-
Confidence 23568899999999999874 3344555555555666555444332 221 234457777777643
Q ss_pred CcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
.....+.+.|.++||++++..+.+|+++ .+++++++++++|+++
T Consensus 291 --------~~~~~~~~~l~~~gi~v~~~~~~iRis~---~~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 291 --------EEKERLLEHLRTKNVAVRSFREGVRITI---GKREENDMILRELEVF 334 (335)
T ss_dssp --------HHHHHHHHHHHHHTEEEEEETTEEEEEC---CCHHHHHHHHHHHHCC
T ss_pred --------CCHHHHHHHHHHCCEEEEECCCeEEEEe---CCHHHHHHHHHHHHhh
Confidence 1256788889999999999778999985 3467899999888653
No 139
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.77 E-value=1.5e-16 Score=178.40 Aligned_cols=332 Identities=11% Similarity=0.003 Sum_probs=210.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCC-----CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~-----~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAv 474 (863)
.|||..+. +. .+|+|.+|+.+++++........+ ..+...++.++|+++++.+ .+.++|+++|++|+
T Consensus 28 ~~ld~~~~------~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~al 99 (406)
T 3cai_A 28 VHFDAPAG------ML-IPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNAD-PGGVVLGADRAVLL 99 (406)
T ss_dssp EECBGGGC------CC-CCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESCHHHHH
T ss_pred EEEeCCCc------CC-CCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCChHHHH
Confidence 67775542 13 579999999999987532110111 1355778999999988743 35899999999999
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcccccee---cCCCCCCCCCcCCcccCCCcccCCC
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA---QAPSPYTGFLQQPWYSGRGLFLDPP 551 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~---t~~~~~~~~~~~~~~~~~~~~~~~p 551 (863)
+.+++...+.. . . ..+||+...+|++.......+ .|.
T Consensus 100 ~~~~~~l~~~~----~--~------------gd~vi~~~~~~~~~~~~~~~~~~~~g~---------------------- 139 (406)
T 3cai_A 100 SLLAEASSSRA----G--L------------GYEVIVSRLDDEANIAPWLRAAHRYGA---------------------- 139 (406)
T ss_dssp HHHHHHTGGGG----B--T------------TCEEEEETTSCGGGTHHHHHHHHHHBC----------------------
T ss_pred HHHHHHHhhcc----C--C------------CCEEEEcCCccHHHHHHHHHHHHhcCC----------------------
Confidence 99887541100 0 1 157999988888754332221 110
Q ss_pred cccccCceeeecCc-chhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 002941 552 TVFMYNSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (863)
Q Consensus 552 ~~~~~~~~~~~~~P-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViq 630 (863)
.+..++.. ..+ .-| .+.+++.+. .++.+|+++++ +
T Consensus 140 ------~v~~v~~~~~~~---------------------~~d--------~~~l~~~l~--------~~~~~v~~~~~-~ 175 (406)
T 3cai_A 140 ------KVKWAEVDIETG---------------------ELP--------TWQWESLIS--------KSTRLVAVNSA-S 175 (406)
T ss_dssp ------EEEEECCCTTTC---------------------CCC--------GGGHHHHCC--------TTEEEEEEESB-C
T ss_pred ------eEEEEecCcccC---------------------CcC--------HHHHHHHhC--------CCceEEEEeCC-c
Confidence 00111111 000 001 123444442 35788899987 8
Q ss_pred cCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCCCce-eeeccHHH
Q 002941 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLA-ATLATNAV 707 (863)
Q Consensus 631 g~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pig-av~~~~~i 707 (863)
+..|.+.+ +++|.++|++||+++|+||+|+ +|... +....++ +|++++ +|.+| + .+| ++++++++
T Consensus 176 nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~~--~d~~~~s~~K~~g-~--~~G~~~~~~~~~ 243 (406)
T 3cai_A 176 GTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYRL--LDIRETD--ADVVTVNAHAWGG-P--PIGAMVFRDPSV 243 (406)
T ss_dssp TTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTCC--CCHHHHC--CSEEEEEGGGGTS-C--SCEEEEESCHHH
T ss_pred CCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCCC--CCchhcC--CCEEEeehhhhcC-C--CcCeEEEEehHH
Confidence 99998876 7899999999999999999995 43321 3334444 688754 79765 3 288 89999998
Q ss_pred HHhhhcCCccce--eec-ccCCCccHHHHHHHHHHHHHhcChh-------------hHHhHHHHHHHHHHHHHHHHHHHH
Q 002941 708 FDSFVGDSKLKA--LLH-GHSYSAHALGCAAAAKSIKWFKDPQ-------------TNHNIIPERRILRELWDLELIQQI 771 (863)
Q Consensus 708 ~~~l~~~~~~~~--~~~-~~T~~~~pla~AAalAaL~~l~~~~-------------l~~~l~~~~~~l~~~l~~~l~~~~ 771 (863)
++.+........ ... ....+.++.+++++.++++.+++.+ ..+++.+..+.+++.+.+ .+
T Consensus 244 ~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~L 319 (406)
T 3cai_A 244 MNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMV----SL 319 (406)
T ss_dssp HHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHH----HH
T ss_pred HhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHH----HH
Confidence 887653210000 000 0133468888888889999876522 244555555555554433 34
Q ss_pred hcCCCeeEec---ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--------------CEEEEecCCCC
Q 002941 772 SSHRTVQRVV---ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--------------NVIYLMCGPCS 834 (863)
Q Consensus 772 ~~~p~v~~vr---g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--------------~~lr~~ppl~~ 834 (863)
++.+.+.-+. ..+.++.+.+.... ...+.+.|.++||++++.. +.+|+.++..+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~ 390 (406)
T 3cai_A 320 RSLPLVMLIGRPEAQIPVVSFAVHKVP---------ADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYS 390 (406)
T ss_dssp HTCTTEEECCCCSSBCSEEEEEETTBC---------HHHHHHHHHHTTEECEECCSCHHHHHHTTTTTTCCEEEECCTTC
T ss_pred hcCCCeEEcCCccccCCEEEEEECCcC---------HHHHHHHHHHCCcEEecCChHHHHHHcCCCCCCCeEEEEeecCC
Confidence 4455432221 23557777775321 4568888999999998642 68999988888
Q ss_pred cHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQ 848 (863)
Q Consensus 835 t~eeid~~v~~L~~ 848 (863)
+++++++++++|++
T Consensus 391 t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 391 TMAEVDQLVRALAS 404 (406)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998864
No 140
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.77 E-value=4.5e-18 Score=195.45 Aligned_cols=353 Identities=13% Similarity=0.073 Sum_probs=223.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCC--CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPE--NVYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~--~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeA 473 (863)
.|+| .+.+|. .++.+.+++.++++++.... ..+ ...+...++.++|+++++.+ .+.|+|+++++++
T Consensus 69 iyld------~~~~g~-~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~t~g~t~a 140 (465)
T 3e9k_A 69 IYFL------GNSLGL-QPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGAN-EKEIALMNALTVN 140 (465)
T ss_dssp EECB------TTTSCC-EETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCC-GGGEEECSCHHHH
T ss_pred EEec------CCccCC-ChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCC-cCCEEEECCHHHH
Confidence 6777 345676 57788888888887654221 101 12244567888899888754 4689999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcc
Q 002941 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (863)
Q Consensus 474 vE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (863)
+..+++...+ .|. .+.+||+...+||+......+......+ .+. .+
T Consensus 141 l~~~~~~~~~-----~~~-------------~~~~Vl~~~~~~~s~~~~~~~~~~~~G~------------~~~----~~ 186 (465)
T 3e9k_A 141 LHLLMLSFFK-----PTP-------------KRYKILLEAKAFPSDHYAIESQLQLHGL------------NIE----ES 186 (465)
T ss_dssp HHHHHHHHCC-----CCS-------------SSCEEEEETTCCHHHHHHHHHHHHHTTC------------CHH----HH
T ss_pred HHHHHHHhcc-----ccC-------------CCCEEEEcCCcCCchHHHHHHHHHHcCC------------cce----ee
Confidence 9999987621 111 1368999999999865533322100000 000 00
Q ss_pred cccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
.+...+.+..+ .-| .+.+++.+++ +.+++++|+++.+ ++..
T Consensus 187 ----~v~~~~~~~~~---------------------~~d--------~~~l~~~i~~-----~~~~~~lv~~~~~-~n~t 227 (465)
T 3e9k_A 187 ----MRMIKPREGEE---------------------TLR--------IEDILEVIEK-----EGDSIAVILFSGV-HFYT 227 (465)
T ss_dssp ----EEEECCCTTCS---------------------SCC--------HHHHHHHHHH-----HGGGEEEEEEESB-CTTT
T ss_pred ----eEEEecCCCCC---------------------ccC--------HHHHHHHHHh-----cCCCeEEEEEeCc-ccCc
Confidence 00000111000 001 2456666652 2247899999997 9999
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHHhh
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSF 711 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~~l 711 (863)
|.+.+ +++|.++|++||+++|+|++|+ +|.. ......++ .|++++ .|.+.+|..++|++.+++++.+.+
T Consensus 228 G~~~~----l~~i~~la~~~g~~vi~D~a~~-~g~~--~~~~~~~~--~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~ 298 (465)
T 3e9k_A 228 GQHFN----IPAITKAGQAKGCYVGFDLAHA-VGNV--ELYLHDWG--VDFACWCSYKYLNAGAGGIAGAFIHEKHAHTI 298 (465)
T ss_dssp CBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS--CCCHHHHT--CCEEEECSSSTTCCCTTCCCEEEECGGGTTTS
T ss_pred ceeec----HHHHHHHHHHcCCEEEEEhhhh-cCCc--CCchhhcC--CCEEEECcccccccCCCceEEEEEcHHHHhhc
Confidence 98876 8999999999999999999995 4332 22233333 587765 599965545789999999987765
Q ss_pred hcCCc-cc------ee--ecccC----------CCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 712 VGDSK-LK------AL--LHGHS----------YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 712 ~~~~~-~~------~~--~~~~T----------~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
..... +. .+ ...++ .+.+++++++..++++.+++.+ .++++++...+.+++.+.+.+.+.
T Consensus 299 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~ 377 (465)
T 3e9k_A 299 KPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQAT-MKALRKKSVLLTGYLEYLIKHNYG 377 (465)
T ss_dssp CCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 42100 00 00 00011 1567889999999999886432 345555566666655555443321
Q ss_pred c------CCCee-----EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEec-CCCCcHHHH
Q 002941 773 S------HRTVQ-----RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMC-GPCSSPEVC 839 (863)
Q Consensus 773 ~------~p~v~-----~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~p-pl~~t~eei 839 (863)
. .+.+. +.+..|.++.+.+..+ ...+.+.|.++||++...+ +.+|++| |+.+|++||
T Consensus 378 ~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~----------~~~l~~~L~~~Gi~v~~~~~~~iRis~~~~~~t~edi 447 (465)
T 3e9k_A 378 KDKAATKKPVVNIITPSHVEERGCQLTITFSVP----------NKDVFQELEKRGVVCDKRNPNGIRVAPVPLYNSFHDV 447 (465)
T ss_dssp ---------CEEECSCSSGGGBCSCEEEEECCT----------TCCHHHHHHTTTEECEEETTTEEEEBCCTTTCCHHHH
T ss_pred ccccccCCCCeEEeCCCCHhhcccEEEEEecCC----------HHHHHHHHHHCCEEEecCCCCEEEEeCcccCCCHHHH
Confidence 1 12222 2234588888887622 2357888999999998664 8999998 899999999
Q ss_pred HHHHHHHHHHHHHH
Q 002941 840 SQLLLKLYQRLEEF 853 (863)
Q Consensus 840 d~~v~~L~~~l~~l 853 (863)
++++++|++++++.
T Consensus 448 ~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 448 YKFTNLLTSILDSA 461 (465)
T ss_dssp HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988653
No 141
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.76 E-value=8.8e-18 Score=190.62 Aligned_cols=227 Identities=9% Similarity=-0.002 Sum_probs=155.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHH-HcCCeEEEecccc--cccccCCcc-hh--
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ-NRKIPVIFDEVFT--GFWRLGVET-TA-- 675 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~-~~gilLI~DEV~T--GfGRtG~~~-a~-- 675 (863)
+.+++.+. ..++.+|++.|..++..|. +.+.+++++|.++|+ +||+++|+||+|. +|+..|..+ ..
T Consensus 168 ~~l~~~l~-------~~~~~~v~~~~~~~NPtG~-~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~ 239 (422)
T 3d6k_A 168 GVVRELVK-------DPQVKGMWTVPVFGNPTGV-TFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIE 239 (422)
T ss_dssp HHHHHHHT-------STTEEEEEECCSSCTTTCC-CCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHH
T ss_pred HHHHHHHh-------cCCCeEEEEcCCCCCCCCC-CCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhh
Confidence 45666663 1356777766654788886 558899999999999 9999999999996 475555321 22
Q ss_pred -----hhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhH
Q 002941 676 -----DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTN 749 (863)
Q Consensus 676 -----e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~ 749 (863)
+..+...++.+|||.++.| +++|++++++++++.+.. .....+++.++++++++.++|+.... .++.
T Consensus 240 ~~~~~~~~~~~i~~~S~SK~~~~G-lriG~~~~~~~l~~~l~~------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~ 312 (422)
T 3d6k_A 240 FAQAAGNPNRFWFMSSTSKITHAG-SGVSFFASSKENIEWYAS------HANVRGIGPNKLNQLAHAQFFGDVAGLKAHM 312 (422)
T ss_dssp HHHHTTCTTCEEEEEESTTTSCTT-SSCEEEECCHHHHHHHHH------HHHHHCSCCCHHHHHHHHHHHCSHHHHHHHH
T ss_pred HhhccCCCCcEEEEcChhhhcCcc-cceEEEEeCHHHHHHHHH------HHHhhcCCCCHHHHHHHHHHHhCcchHHHHH
Confidence 1234445566899987778 899999999999988764 12445677899999988887762100 1233
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec------
Q 002941 750 HNIIPERRILRELWDLELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------ 822 (863)
Q Consensus 750 ~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~------ 822 (863)
+++++..+..++.+.+.+.+.+...+.+..+. ..|+++.+++.... ...+...|.++||++.|.
T Consensus 313 ~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~---------~~~~~~~l~~~gV~v~~~g~~f~~ 383 (422)
T 3d6k_A 313 LKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPGT---------ASRVVELAKEAGIALTGAGSSFPL 383 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTTC---------HHHHHHHHHHTTEECCCTTTTSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCCC---------HHHHHHHHHHCCeEEEcCccccCC
Confidence 33444444444444444444444444343333 35778888886421 345778889999999872
Q ss_pred -----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 823 -----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 823 -----g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.+.+|+.+.. ++++++++++++|.++++++
T Consensus 384 ~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~ 418 (422)
T 3d6k_A 384 HNDPNNENIRLAPSL-PPVAELEVAMDGFATCVLMA 418 (422)
T ss_dssp GCCTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEecCC-CCHHHHHHHHHHHHHHHHHH
Confidence 2678987665 89999999999999998765
No 142
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.76 E-value=5e-18 Score=192.65 Aligned_cols=219 Identities=10% Similarity=-0.015 Sum_probs=149.0
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHH-HHcCCeEEEecccccc--cccCC----cchh----hhcCCCCcEEE
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC-QNRKIPVIFDEVFTGF--WRLGV----ETTA----DLLGCVPDIAC 686 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc-~~~gilLI~DEV~TGf--GRtG~----~~a~----e~~gv~PDivt 686 (863)
.++.+|++.|..++..|.+. +.+.+++|.++| ++||+++|+||+++++ +..+. .+.. ...+...++.+
T Consensus 179 ~~~~~v~~~p~~~NPtG~~~-~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 257 (427)
T 3ppl_A 179 PQVKGMWVVPVFSNPTGFTV-TEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTS 257 (427)
T ss_dssp TTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEE
T ss_pred CCCeEEEECCCCCCCCCccC-CHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEec
Confidence 46788888876578888665 566699999999 9999999999999884 33331 1111 13344555679
Q ss_pred eccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHHhHHHHHHHHHHHHHH
Q 002941 687 YGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDL 765 (863)
Q Consensus 687 ~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~~l~~~~~~l~~~l~~ 765 (863)
|||.++.| +++|++++++++++.+.. .....+++.++++++++.+.|+.... .+...+..+..+..++.+.+
T Consensus 258 ~SK~~~~G-~r~G~~~~~~~l~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (427)
T 3ppl_A 258 TSKITLAG-AGVSFFLTSAENRKWYTG------HAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLE 330 (427)
T ss_dssp STTTSCTT-SSCEEEECCHHHHHHHHH------HHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCcC-ccEEEEEcCHHHHHHHHH------HhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99997778 899999999999988764 12445778889998888887763100 11222333333333333333
Q ss_pred HHHHHHhcCCCeeE-ecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----------CCEEEEecCCC
Q 002941 766 ELIQQISSHRTVQR-VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----------GNVIYLMCGPC 833 (863)
Q Consensus 766 ~l~~~~~~~p~v~~-vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----------g~~lr~~ppl~ 833 (863)
.+.+.+...+.+.. ....|+++.+++.... ...+.+.|.++||++.|. .+.+|+.+...
T Consensus 331 ~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~---------~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~ 401 (427)
T 3ppl_A 331 ILDSRLAEYGVAQWTVPAGGYFISLDVVPGT---------ASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP 401 (427)
T ss_dssp HHHHHHGGGTCCEECCCSBSSCEEEECSTTC---------HHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS
T ss_pred HHHHhcCCCCceEEeCCCccEEEEEECCcch---------HHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC
Confidence 44333333332222 2234788888886432 456788899999999882 37899986443
Q ss_pred CcHHHHHHHHHHHHHHHHHHH
Q 002941 834 SSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 834 ~t~eeid~~v~~L~~~l~~l~ 854 (863)
++++|++++++|.++++++.
T Consensus 402 -~~~~i~~~~~~l~~~l~~~~ 421 (427)
T 3ppl_A 402 -PVEELEVAMDGVATCVLLAA 421 (427)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998765
No 143
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.76 E-value=6.9e-17 Score=182.06 Aligned_cols=285 Identities=13% Similarity=0.036 Sum_probs=188.6
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +.+++++||++|+..|++.+++ .| .+||+...+||+
T Consensus 61 r~~~~~~~~l~~~la~~~g~---~~~i~~~sG~~a~~~~l~~~~~---------~g------------d~vl~~~~~~~~ 116 (398)
T 1gc0_A 61 RISNPTLNLLEARMASLEGG---EAGLALASGMGAITSTLWTLLR---------PG------------DEVLLGNTLYGC 116 (398)
T ss_dssp --CCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHCC---------TT------------CEEEEESSCCSH
T ss_pred CCCChHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHhc---------CC------------CEEEEeCCCchh
Confidence 34678889999999999884 5788899999999999987621 12 579999999988
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.......+... . |+....+|. .|
T Consensus 117 ~~~~~~~~~~~---~------------------------g~~~~~~~~------------------------~d------ 139 (398)
T 1gc0_A 117 TFAFLHHGIGE---F------------------------GVKLRHVDM------------------------AD------ 139 (398)
T ss_dssp HHHHHHHTGGG---G------------------------TCEEEEECT------------------------TC------
T ss_pred HHHHHHHHHHH---c------------------------CCEEEEECC------------------------CC------
Confidence 64332111000 0 000000110 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.++ +++.+|++|++ ++..|.+.+ +++|.++|++||+++|+||+|+.+ ..+... .+
T Consensus 140 --~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~-~~~~~~---~~ 200 (398)
T 1gc0_A 140 --LQALEAAMT--------PATRVIYFESP-ANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTP-YLQRPL---EL 200 (398)
T ss_dssp --HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHH-HHCCGG---GG
T ss_pred --HHHHHHhcC--------CCCeEEEEECC-CCCCccccc----HHHHHHHHHHcCCEEEEECCCccc-ccCCch---hh
Confidence 234555553 36789999997 899998875 999999999999999999999643 443322 23
Q ss_pred CCCCcEEEeccccCCCCCCc-eeeeccHHHHH-hhhcCCccceeecc-cCCCccHHHHHHHHHHHHHhcChhhHHhHHHH
Q 002941 679 GCVPDIACYGKLLTGGVIPL-AATLATNAVFD-SFVGDSKLKALLHG-HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (863)
Q Consensus 679 gv~PDivt~sKgLggG~~Pi-gav~~~~~i~~-~l~~~~~~~~~~~~-~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~ 755 (863)
+....+.+++|.++++..|+ |++++++++++ .+.. ..+. .+.+.+|+++++++++++.+. ...++..++
T Consensus 201 ~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~ 272 (398)
T 1gc0_A 201 GADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQ------GLKDMTGAVLSPHDAALLMRGIKTLN--LRMDRHCAN 272 (398)
T ss_dssp TCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHT------HHHHHTCCCCCHHHHHHHHHHHTTHH--HHHHHHHHH
T ss_pred CceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHH------HhhccCCCCCCHHHHHHHHhccchHH--HHHHHHHHH
Confidence 44333447899999755787 88888888665 4442 1233 456679999999988887652 234555566
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeeE------------------ecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCc
Q 002941 756 RRILRELWDLELIQQISSHRTVQR------------------VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGV 817 (863)
Q Consensus 756 ~~~l~~~l~~~l~~~~~~~p~v~~------------------vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV 817 (863)
.+.+.+.|. +++.+.. .++.|.++.+++... .......+.+.|+
T Consensus 273 ~~~l~~~L~--------~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~l~~~~i 334 (398)
T 1gc0_A 273 AQVLAEFLA--------RQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG----------IGAGRRFMNALQL 334 (398)
T ss_dssp HHHHHHHHH--------TCTTEEEEEEC----------------CCTTEEEEEETTH----------HHHHHHHHHHCSS
T ss_pred HHHHHHHHh--------cCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC----------HHHHHHHHHhCCC
Confidence 666655442 2332222 136788999988532 2234556667777
Q ss_pred EEEe---c----------------------------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 818 YMRP---L----------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 818 ~~~p---~----------------------------g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
+.+. + .+.+|++++...++++|+.+.++|+++
T Consensus 335 ~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 335 FSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp SEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 7643 1 278999999989999999998888754
No 144
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.76 E-value=3.1e-17 Score=185.86 Aligned_cols=348 Identities=12% Similarity=0.039 Sum_probs=202.6
Q ss_pred eEEeeecccccccCCCCCc--HHHHHHHHHHHHhcccc--cCCCCCChHHHHHHHHHHhhcCCC-CCC--eEEEeCChhh
Q 002941 400 QQFDACASWWTQGPDATLQ--IELARDMGYTAARFGHV--MFPENVYEPALECAELLLQGVGKG-WAS--RAYFSDNGST 472 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~--p~V~~Ai~~q~~~~~~~--~~~~~~~~~~~eLae~L~~~~p~~-~~~--~v~f~~SGSe 472 (863)
.++|+..|++..+-|+ .. |.|.+|+.+++++.... ....+..+....+++.+....+.. ..+ .++|+++|++
T Consensus 50 ~~i~l~~G~y~d~~~~-~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~ 128 (420)
T 4f4e_A 50 TKVNLGVGVYTNEDGK-IPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTG 128 (420)
T ss_dssp SCEECCCCSCCCTTSC-CCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred CcEEeeeeeeECCCCC-ccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHH
Confidence 6789999887777666 44 89999999998862211 111122344445555554322100 024 7999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCc
Q 002941 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (863)
Q Consensus 473 AvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (863)
|++.++++. ... . .| .+|++...+|++........+..
T Consensus 129 al~~~~~~~-~~~--~----~g------------d~Vlv~~p~~~~~~~~~~~~g~~----------------------- 166 (420)
T 4f4e_A 129 ALKIGADFL-RTL--N----PK------------AKVAISDPSWENHRALFDMAGFE----------------------- 166 (420)
T ss_dssp HHHHHHHHH-HHH--C----TT------------CCEEEEESCCHHHHHHHHHTTCC-----------------------
T ss_pred HHHHHHHHH-HHh--C----CC------------CEEEEeCCCcHhHHHHHHHcCCe-----------------------
Confidence 999998865 222 0 12 56999999998865443322110
Q ss_pred ccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 002941 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (863)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~ 632 (863)
+..+++.+.. +..-| .+.+++.+.+ .+.+..++++... ++.
T Consensus 167 ------~~~v~~~~~~-------------------~~~~d--------~~~l~~~l~~-----~~~~~~~v~i~~p-~NP 207 (420)
T 4f4e_A 167 ------VVAYPYYDAK-------------------TNGVN--------FDGMLAALNG-----YEPGTIVVLHACC-HNP 207 (420)
T ss_dssp ------EEEEECEETT-------------------TTEEC--------HHHHHHHHTT-----CCTTCEEEEECSS-CTT
T ss_pred ------EEEeeeeccc-------------------cCccC--------HHHHHHHHHh-----CCCCCEEEEeCCC-CCC
Confidence 0111110000 00011 2456666753 2345667777665 899
Q ss_pred CCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC--cchhhhc-CCCCcEE---EeccccC-CCCCCceeeec--
Q 002941 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLL-GCVPDIA---CYGKLLT-GGVIPLAATLA-- 703 (863)
Q Consensus 633 gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--~~a~e~~-gv~PDiv---t~sKgLg-gG~~Pigav~~-- 703 (863)
.|.+ ++.+.+++|.++|++||+++|+||++.+|+..|. ......+ +..++++ +|||.++ .| +++|++++
T Consensus 208 tG~~-~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~~~ 285 (420)
T 4f4e_A 208 TGVD-LNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYG-ERVGALSIIT 285 (420)
T ss_dssp TCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGG-GCEEEEEEEC
T ss_pred CCCC-CCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcC-CCcEEEEEEc
Confidence 9965 4788899999999999999999999999976542 2222222 2333433 6899998 68 89999753
Q ss_pred -cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHh--cC--hhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee
Q 002941 704 -TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWF--KD--PQTNHNIIPERRILRELWDLELIQQISSHRTVQ 778 (863)
Q Consensus 704 -~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l--~~--~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~ 778 (863)
++++++.+...- .......+.+.++++++++.+.|+.. ++ .+..+++++..+..++.+.+.+.+.... +.+.
T Consensus 286 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~ 362 (420)
T 4f4e_A 286 DSKDEAARVLSQL--KRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIE-RDFS 362 (420)
T ss_dssp SSHHHHHHHHHHH--HHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS-SCCT
T ss_pred CCHHHHHHHHHHH--HHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCce
Confidence 566655432110 00111233345667777766666531 10 1223444444445555444333322110 1222
Q ss_pred Ee-cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 779 RV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 779 ~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.. ...|+++.+.+. ...+...+.++||++.|.+ |+.. ..++++++++++++|.+++
T Consensus 363 ~~~~~~g~~~~~~~~------------~~~~~~~l~~~gI~v~~~~---Ris~-~~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 363 FINAQRGMFSYSGLT------------SAQVDRLREEFGIYAVSTG---RICV-AALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp HHHHSCSSEEECCCC------------HHHHHHHHHHHCEECCTTS---EEEG-GGCCTTTHHHHHHHHHHHH
T ss_pred eECCCccEEEEeCCC------------HHHHHHHHHhCCEEecCCC---eEEE-ecCCHHHHHHHHHHHHHHh
Confidence 22 334555544332 2345667778999999865 6654 3457888999999998875
No 145
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.76 E-value=7.1e-18 Score=184.52 Aligned_cols=322 Identities=16% Similarity=0.082 Sum_probs=203.7
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr 495 (863)
.+|+|.+|+.+++.. +.. ....+...++.++|+++++.+ ..+.++|++||++|++.+++.++
T Consensus 11 ~~~~v~~a~~~~~~~--~~~--~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~------------- 73 (353)
T 2yrr_A 11 IPERVQKALLRPMRG--HLD--PEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD------------- 73 (353)
T ss_dssp CCHHHHGGGGSCCCC--TTC--HHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS-------------
T ss_pred CCHHHHHHHhccccc--ccC--HHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc-------------
Confidence 478999988877653 110 012344788999999988742 12579999999999999988661
Q ss_pred cCCCccccccccEEEEecCCCccCcccc-ceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcc
Q 002941 496 LGKDTTEKCIELKVLALKGSYHGDTLGA-MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (863)
Q Consensus 496 ~~~~~~~~~~r~~II~~~~sYHG~t~ga-ls~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~ 574 (863)
+.+|++...+||+..... ....|. .+..++.+..+
T Consensus 74 ----------~d~vl~~~~~~~~~~~~~~~~~~g~----------------------------~~~~v~~~~~~------ 109 (353)
T 2yrr_A 74 ----------RGPVLVLVNGAFSQRVAEMAALHGL----------------------------DPEVLDFPPGE------ 109 (353)
T ss_dssp ----------CCCEEEEECSHHHHHHHHHHHHTTC----------------------------CEEEEECCTTS------
T ss_pred ----------CCcEEEEcCCCchHHHHHHHHHcCC----------------------------ceEEEeCCCCC------
Confidence 035888888999852111 111110 01111111000
Q ss_pred ccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC
Q 002941 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (863)
Q Consensus 575 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g 654 (863)
..| .+.+++.+.+ .++.+|+++.. ++..|.+.+ +++|.++|++||
T Consensus 110 ---------------~~d--------~~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~ 154 (353)
T 2yrr_A 110 ---------------PVD--------PEAVARALKR-------RRYRMVALVHG-ETSTGVLNP----AEAIGALAKEAG 154 (353)
T ss_dssp ---------------CCC--------HHHHHHHHHH-------SCCSEEEEESE-ETTTTEECC----HHHHHHHHHHHT
T ss_pred ---------------CCC--------HHHHHHHHHh-------CCCCEEEEEcc-CCCcceecC----HHHHHHHHHHcC
Confidence 011 2456666642 14557788886 899998876 889999999999
Q ss_pred CeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHHhhhcCCcc-------cee--ecc
Q 002941 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDSKL-------KAL--LHG 723 (863)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~~l~~~~~~-------~~~--~~~ 723 (863)
+++|+||+| ++|+.. +....++ +|++++ +|+++|+ .++|++++++++++.+...... ... ...
T Consensus 155 ~~li~D~a~-~~~~~~--~~~~~~~--~d~~~~s~~K~~~~~-~g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 228 (353)
T 2yrr_A 155 ALFFLDAVT-TLGMLP--FSMRAMG--VDYAFTGSQKCLSAP-PGLAPIAASLEARKAFTGKRGWYLDLARVAEHWERGG 228 (353)
T ss_dssp CEEEEECTT-TTTTSC--CCHHHHT--CSEEECCTTSTTCCC-SSCEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCC
T ss_pred CeEEEEcCc-cccccc--ccccccC--ceEEEecCcccccCC-CceEEEEECHHHHHHhccCCCccccHHHHhhhhhcCC
Confidence 999999999 677653 2333343 688876 6998876 4689999999998876410000 000 011
Q ss_pred cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchH
Q 002941 724 HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSL 803 (863)
Q Consensus 724 ~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~ 803 (863)
.+++.++.+++++.++++.+++.+ .+++.+..+.+++.+.+.+.+. ....+......+.++.+.+....
T Consensus 229 ~~~~~~~~~~~a~~~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~-------- 297 (353)
T 2yrr_A 229 YHHTTPVLLHYALLEALDLVLEEG-VAARERRAREVYAWVLEELKAR--GFRPYPKASPLPTVLVVRPPEGV-------- 297 (353)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHT--TCEESCSSSBCTTEEEEECCTTC--------
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHC--CCccccCccCCCeEEEEECCCCC--------
Confidence 234567888888889998875432 2344444445555444444331 22111111124566677764221
Q ss_pred HHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHH-HHHHHHHHHHH
Q 002941 804 YAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCS-QLLLKLYQRLE 851 (863)
Q Consensus 804 ~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid-~~v~~L~~~l~ 851 (863)
...++.+.|.++||++++. ++.+|+.++...++++++ +++++|+++++
T Consensus 298 ~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 298 DADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALA 351 (353)
T ss_dssp CHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 1467889999999999864 378999977778999998 99999988765
No 146
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.76 E-value=6.1e-17 Score=184.39 Aligned_cols=214 Identities=13% Similarity=0.060 Sum_probs=142.2
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchh---hhcCCCCcEEEeccccCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA---DLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~---e~~gv~PDivt~sKgLggG~ 695 (863)
++.+|++... ++..|.+ .+.+.+++|.++|++||++||+||+|..+ ..+..+.. ...+...++.++||.+..|
T Consensus 206 ~~~~v~i~~p-~nptG~~-~~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G- 281 (444)
T 3if2_A 206 RIGAICCSRP-TNPTGNV-LTDEEMAHLAEIAKRYDIPLIIDNAYGMP-FPNIIYSDAHLNWDNNTILCFSLSKIGLPG- 281 (444)
T ss_dssp CEEEEEEESS-CTTTCCC-CCHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESTTTTCGG-
T ss_pred CceEEEeCCC-CCCCCCc-CCHHHHHHHHHHHHHCCCEEEEECCCCCc-ccccccccccccCCCCEEEEechhhccCCC-
Confidence 4555555433 7888875 46778999999999999999999999532 22211110 1123334466899987778
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHh----HHHHHHHHHHHHHHHHHHHH
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN----IIPERRILRELWDLELIQQI 771 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~----l~~~~~~l~~~l~~~l~~~~ 771 (863)
+++|++++++++++.+.. ..+..+++.++++++++.+.++.. ++... +.+..+..++.+.+.+.+.+
T Consensus 282 ~r~G~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 352 (444)
T 3if2_A 282 MRTGIIVADAKVIEAVSA------MNAVVNLAPTRFGAAIATPLVAND---RIKQLSDNEIKPFYQKQATLAVKLLKQAL 352 (444)
T ss_dssp GCCEEEECCHHHHHHHHH------HHHHHHSSCCCHHHHHHHHHHHTS---HHHHHHHHTHHHHHHHHHHHHHHHHHHHS
T ss_pred CceEEEEECHHHHHHHHH------HHHhccCCCChHHHHHHHHHHHcC---chhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999998864 234567788999999998888742 22222 22222333333333333333
Q ss_pred hcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---------------CEEEEecCCCCcH
Q 002941 772 SSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---------------NVIYLMCGPCSSP 836 (863)
Q Consensus 772 ~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---------------~~lr~~ppl~~t~ 836 (863)
............|+++.+.+.... .....+...|.++||++.|.. +.+|+.++. ++
T Consensus 353 ~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~ 423 (444)
T 3if2_A 353 GDYPLMIHKPEGAIFLWLWFKDLP-------ISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DE 423 (444)
T ss_dssp SSSSEEEECCCBSSEEEEEETTCS-------SCHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CH
T ss_pred ccCCceEecCCccEEEEEEcCCCC-------CCHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CH
Confidence 222211222456888888886421 015568888999999998731 479998775 99
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 837 eeid~~v~~L~~~l~~l~ 854 (863)
++|++++++|.++++++.
T Consensus 424 e~i~~~l~~l~~~~~~~~ 441 (444)
T 3if2_A 424 QTLIDGIKVIGEVVRELY 441 (444)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999987654
No 147
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.75 E-value=1.9e-16 Score=179.40 Aligned_cols=304 Identities=13% Similarity=0.054 Sum_probs=194.0
Q ss_pred cCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccc
Q 002941 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (863)
Q Consensus 412 ~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~ 491 (863)
.++| .+|+.++++.. ....+.. ....++...+++++|+++.+. +.++|++||++|+..|++.+++
T Consensus 29 ~~~~-~~~~~~~~~~~--~~~~~~y-~~~~~~~~~~l~~~la~~~g~---~~~~~~~~gt~a~~~al~~l~~-------- 93 (412)
T 2cb1_A 29 AYGF-KTLEEGQERFA--TGEGYVY-ARQKDPTAKALEERLKALEGA---LEAVVLASGQAATFAALLALLR-------- 93 (412)
T ss_dssp BCCC-SSHHHHHHHHH--HCCSCSB-TTTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHTTCC--------
T ss_pred eeec-CChHHHHHHhc--cccCcCc-CCCCChHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHhC--------
Confidence 5666 56766555543 2223321 223567889999999999873 5899999999999999987621
Q ss_pred cccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhh
Q 002941 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (863)
Q Consensus 492 ~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~ 571 (863)
.| .+||+....||+.......... . . |.....+|
T Consensus 94 -~g------------d~vi~~~~~~~~~~~~~~~~~~--~-~------------------------g~~~~~~~------ 127 (412)
T 2cb1_A 94 -PG------------DEVVAAKGLFGQTIGLFGQVLS--L-M------------------------GVTVRYVD------ 127 (412)
T ss_dssp -TT------------CEEEEETTCCHHHHHHHHHTTT--T-T------------------------TCEEEEEC------
T ss_pred -CC------------CEEEEeCCCchhHHHHHHHHHH--H-c------------------------CCEEEEEC------
Confidence 12 5799999988764322111000 0 0 00000111
Q ss_pred hccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHH
Q 002941 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (863)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~ 651 (863)
.| .+.+++.+. .++.+|++|++ ++..|.+.+ +++|.++|+
T Consensus 128 -------------------~~--------~~~l~~~i~--------~~~~~v~~~~~-~n~~G~~~~----l~~i~~l~~ 167 (412)
T 2cb1_A 128 -------------------PE--------PEAVREALS--------AKTRAVFVETV-ANPALLVPD----LEALATLAE 167 (412)
T ss_dssp -------------------SS--------HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHH
T ss_pred -------------------CC--------HHHHHHHhc--------cCCeEEEEeCC-CCCCccccc----HHHHHHHHH
Confidence 00 234555553 35788999997 899998875 999999999
Q ss_pred HcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCCCCCCceeeeccH------------------------
Q 002941 652 NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATN------------------------ 705 (863)
Q Consensus 652 ~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLggG~~Pigav~~~~------------------------ 705 (863)
+||+++|+||+|++++.... ..+..+|+++ ++|.++++..++|++++.+
T Consensus 168 ~~~~~li~D~~~~~~~~~~~-----~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 242 (412)
T 2cb1_A 168 EAGVALVVDNTFGAAGALCR-----PLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEA 242 (412)
T ss_dssp HHTCEEEEECGGGTTTTSCC-----GGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHH
T ss_pred HcCCEEEEECCCccccccCC-----ccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhc
Confidence 99999999999976532222 2234589886 7899986447888887654
Q ss_pred ----HHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-
Q 002941 706 ----AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV- 780 (863)
Q Consensus 706 ----~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v- 780 (863)
++.+.++.. ......+..+|.+++.+++.++.++ ...++..++.+++.+ .+.+++.|..+
T Consensus 243 ~~~~~~~~~~r~~-----~~~~~g~~~~~~~a~~~~~~l~~l~--~~~~~~~~~~~~l~~--------~L~~~~~v~~v~ 307 (412)
T 2cb1_A 243 LRARCFPERVRTL-----GLSLCGMALSPFNAYLLFQGLETVA--LRVARMSETARFLAE--------RLQGHPKVKALR 307 (412)
T ss_dssp HGGGHHHHHHHHH-----HTTTTCCCCCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHH--------HHHTCTTCSEEE
T ss_pred cchHHHHHHHHHH-----HHHhcCCCCChHHhHHHHcCCchHH--HHHHHHHHHHHHHHH--------HHHcCCCeeEEE
Confidence 233333210 0012233568888888888877652 223333344444433 34455655544
Q ss_pred -----------------cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---------------------
Q 002941 781 -----------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------------------- 822 (863)
Q Consensus 781 -----------------rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------------------- 822 (863)
++.|.++.+++ .+ ...+...|.+.||++ ..
T Consensus 308 ~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~~----------~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~ 375 (412)
T 2cb1_A 308 YPGLPEDPAHRNARKYLASGGPILTLDL-GD----------LERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLK 375 (412)
T ss_dssp CTTSTTCTTHHHHHHHCSSSCSEEEEEC-SS----------HHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSC
T ss_pred CCCCCCCccHHHHHHhCCCCceEEEEEe-CC----------HHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCC
Confidence 46788999999 43 334566666788886 22
Q ss_pred ----------CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 823 ----------GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 823 ----------g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
.+.+|++.....++++|+.++++|++
T Consensus 376 ~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 376 EEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp HHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 36899998888899999998888764
No 148
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.75 E-value=4.4e-17 Score=183.66 Aligned_cols=256 Identities=13% Similarity=0.055 Sum_probs=172.0
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +.++|++||++|++.|++.+++ .| .+||+....|||
T Consensus 62 r~~~~~~~~l~~~la~~~g~---~~~~~~~sGt~A~~~al~~~~~---------~g------------d~Vi~~~~~y~~ 117 (392)
T 3qhx_A 62 RTGNPTRTALEAALAAVEDA---AFGRAFSSGMAAADCALRAMLR---------PG------------DHVVIPDDAYGG 117 (392)
T ss_dssp TTCCHHHHHHHHHHHHHTTC---SEEEEESSHHHHHHHHHHHHCC---------TT------------CEEEEETTCCHH
T ss_pred CCCChHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHhC---------CC------------CEEEEeCCCcch
Confidence 34678888999999999873 5899999999999999997621 12 579999999987
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.......... .. |.....+|. +|
T Consensus 118 ~~~~~~~~~~--------------~~-------------g~~~~~v~~------------------------~d------ 140 (392)
T 3qhx_A 118 TFRLIDKVFT--------------GW-------------NVEYTPVAL------------------------AD------ 140 (392)
T ss_dssp HHHHHHHTGG--------------GG-------------TCEEEEECT------------------------TC------
T ss_pred HHHHHHHHHH--------------hc-------------CcEEEEeCC------------------------CC------
Confidence 5322111100 00 000011110 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. +++++|++|++ ++..|.+.+ +++|.++|++||++||+||+|+.+ +.....
T Consensus 141 --~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~la~~~g~~li~D~~~~~~------~~~~~~ 199 (392)
T 3qhx_A 141 --LDAVRAAIR--------PTTRLIWVETP-TNPLLSIAD----IAGIAQLGADSSAKVLVDNTFASP------ALQQPL 199 (392)
T ss_dssp --HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT------TTCCGG
T ss_pred --HHHHHHhhC--------CCCeEEEEECC-CCCCcEEec----HHHHHHHHHHcCCEEEEECCCccc------ccCChH
Confidence 244555553 36889999997 899998876 999999999999999999999522 222334
Q ss_pred CCCCcEEE--eccccCCCC-CCceeeecc-HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 679 GCVPDIAC--YGKLLTGGV-IPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 679 gv~PDivt--~sKgLggG~-~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
+..+|+++ ++|.++++. +++|+++++ +++++.+.. ..+..++..+|+.+++++..++.+.. ..++..+
T Consensus 200 ~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~------~~~~~g~~~~~~~~~~~~~~l~~l~~--~~~~~~~ 271 (392)
T 3qhx_A 200 SLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAF------LQNGAGAVPGPFDAYLTMRGLKTLVL--RMQRHSE 271 (392)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHH------HHHHHCCCCCHHHHHHHHHHHTTHHH--HHHHHHH
T ss_pred HhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHH------HHHhcCCCCCHHHHHHHHhhhhHHHH--HHHHHHH
Confidence 45689987 899998642 578888887 688877753 22446678899999998888876532 1334444
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCC
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDG 816 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~G 816 (863)
+.+++.+ .+.++|.+..| +|.|.++++++..+. ..+..+...|...|
T Consensus 272 ~~~~l~~--------~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~-------~~~~~~~~~l~~~~ 336 (392)
T 3qhx_A 272 NAAAVAE--------FLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR-------TAAEQLCAKTNIFI 336 (392)
T ss_dssp HHHHHHH--------HHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH-------HHHHHHHHHCSSSE
T ss_pred HHHHHHH--------HHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH-------HHHHHHHHhCCCce
Confidence 4444433 34566666555 677999999997531 23556666666555
Q ss_pred cEE
Q 002941 817 VYM 819 (863)
Q Consensus 817 V~~ 819 (863)
+.+
T Consensus 337 ~~~ 339 (392)
T 3qhx_A 337 LAE 339 (392)
T ss_dssp ECS
T ss_pred ECC
Confidence 543
No 149
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.75 E-value=5.5e-17 Score=181.49 Aligned_cols=344 Identities=12% Similarity=0.057 Sum_probs=197.4
Q ss_pred eEEeeecccccccCCCCCc--HHHHHHHHH-HHHhccccc--CCCCCChHHHHHHHHHHhhcCC--CCCC--eEEEeCCh
Q 002941 400 QQFDACASWWTQGPDATLQ--IELARDMGY-TAARFGHVM--FPENVYEPALECAELLLQGVGK--GWAS--RAYFSDNG 470 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~--p~V~~Ai~~-q~~~~~~~~--~~~~~~~~~~eLae~L~~~~p~--~~~~--~v~f~~SG 470 (863)
.++|+..|++..+.|+ .. |.|.+|+.+ +++...... ...+..+...++++.+....+. . .+ .++|+++|
T Consensus 27 ~~i~l~~g~y~d~~~~-~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~-~~~~~i~~t~g~ 104 (397)
T 3fsl_A 27 DKVNLSIGLYYNEDGI-IPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLK-QQRVATIQTLGG 104 (397)
T ss_dssp CCEECSSCCCCCTTSC-CCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH-TTCEEEEEESHH
T ss_pred CeEEEeeeEEECCCCC-ccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCccccc-ccceEEEEcCCc
Confidence 6788888876666665 34 899999999 887532211 1112223344444444432110 1 25 79999999
Q ss_pred hhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCC
Q 002941 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (863)
Q Consensus 471 SeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~ 550 (863)
++|++.++++. .... .| .+|++...+|++....+...+..
T Consensus 105 ~~a~~~~~~~~-~~~~------~g------------d~vl~~~p~~~~~~~~~~~~g~~--------------------- 144 (397)
T 3fsl_A 105 SGALKVGADFL-KRYF------PE------------SGVWVSDPTWENHVAIFAGAGFE--------------------- 144 (397)
T ss_dssp HHHHHHHHHHH-HHHC------TT------------CCEEEESSCCHHHHHHHHHTTCC---------------------
T ss_pred HHHHHHHHHHH-HhcC------CC------------CeEEEeCCCchhHHHHHHHcCCc---------------------
Confidence 99999998865 2220 12 56999999999865433322110
Q ss_pred CcccccCceeeecCc--chhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 002941 551 PTVFMYNSKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (863)
Q Consensus 551 p~~~~~~~~~~~~~P--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPV 628 (863)
+..++.. +.+ .-| .+.+++.+.+ ...+..++++...
T Consensus 145 --------~~~~~~~~~~~~---------------------~~d--------~~~l~~~l~~-----~~~~~~~v~~~~p 182 (397)
T 3fsl_A 145 --------VSTYPWYDEATN---------------------GVR--------FNDLLATLKT-----LQAGSIVLLHPCC 182 (397)
T ss_dssp --------EEEECCEETTTT---------------------EEC--------HHHHHHHHTT-----CCTTCEEEECSSS
T ss_pred --------eEEEeeeeccCC---------------------cCc--------HHHHHHHHHh-----CCCCCEEEEeCCC
Confidence 0111110 000 001 2456667753 2234566666554
Q ss_pred cccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC--Ccchhhhc-CCCCc---EEEeccccC-CCCCCceee
Q 002941 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VETTADLL-GCVPD---IACYGKLLT-GGVIPLAAT 701 (863)
Q Consensus 629 iqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG--~~~a~e~~-gv~PD---ivt~sKgLg-gG~~Pigav 701 (863)
++..|.+ .+.+.+++|.++|++||+++|+||++++|...+ .......+ +..++ +.++||.++ .| +++|++
T Consensus 183 -~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~riG~~ 259 (397)
T 3fsl_A 183 -HNPTGAD-LTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYG-ERVGGL 259 (397)
T ss_dssp -CTTTCCC-CCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGG-GCCEEE
T ss_pred -CCCCCcC-CCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcC-CCeeEE
Confidence 8888864 577789999999999999999999999886542 22222222 22333 337899998 68 899998
Q ss_pred ec---cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHh--cC--hhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 702 LA---TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWF--KD--PQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 702 ~~---~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l--~~--~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
++ ++++++.+.... .......+...++++++++.+.|+.- .+ .+..+++++..+..++.+.+.+.+.....
T Consensus 260 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 337 (397)
T 3fsl_A 260 SVMCEDAEAAGRVLGQL--KATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPER 337 (397)
T ss_dssp EEECSSHHHHHHHHHHH--HHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred EEecCCHHHHHHHHHHH--HHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 64 556665432210 00011223344666766666665521 00 22234444545555555544443321110
Q ss_pred CCeeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 775 RTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 775 p~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
.+... ...|.++.+.+. ...+...|.++||++.|.+ |+.. ..+++++|++++++|+++
T Consensus 338 -~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gi~v~~g~---Ris~-~~~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 338 -NFDYLLNQRGMFSYTGLS------------AAQVDRLREEFGVYLIASG---RMCV-AGLNTANVQRVAKAFAAV 396 (397)
T ss_dssp -CCTHHHHCCSSEEECCCC------------HHHHHHHHHTTCEECCTTC---EEEG-GGCCTTTHHHHHHHHHHH
T ss_pred -CceeecCCceEEEecCCC------------HHHHHHHHHhCCEEECCCC---eEEE-EecCHhhHHHHHHHHHhh
Confidence 12112 223555544432 2346667788999999866 6654 345778899999999875
No 150
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.75 E-value=3.8e-17 Score=182.36 Aligned_cols=326 Identities=11% Similarity=0.012 Sum_probs=202.8
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCC-eEEEeCChhhHHHHHHHHHHHHHHhhccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS-RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~-~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr 495 (863)
.+|++.+|+.+++.. +. .....+...++.++|+++++.+ .+ .++|++||++|++.+++.+++ +|
T Consensus 30 ~~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~g~~-~~~~i~~~~g~t~a~~~~~~~~~~---------~g- 94 (393)
T 2huf_A 30 APQRVLDAMSRPILG--HL--HPETLKIMDDIKEGVRYLFQTN-NIATFCLSASGHGGMEATLCNLLE---------DG- 94 (393)
T ss_dssp CCHHHHHHTTSCCCC--TT--SHHHHHHHHHHHHHHHHHHTCC-CSEEEEESSCHHHHHHHHHHHHCC---------TT-
T ss_pred CCHHHHHHHHhhhcc--CC--CHHHHHHHHHHHHHHHHHhCCC-CCcEEEEcCcHHHHHHHHHHHHhC---------CC-
Confidence 479999988876543 11 1112356788999999988753 23 799999999999999987621 12
Q ss_pred cCCCccccccccEEEEecCCCccCccccce-ecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcc
Q 002941 496 LGKDTTEKCIELKVLALKGSYHGDTLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (863)
Q Consensus 496 ~~~~~~~~~~r~~II~~~~sYHG~t~gals-~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~ 574 (863)
.+|++...+||+.....+. ..|. .+..++.+..+
T Consensus 95 -----------d~vl~~~~~~~~~~~~~~~~~~g~----------------------------~~~~v~~~~~~------ 129 (393)
T 2huf_A 95 -----------DVILIGHTGHWGDRSADMATRYGA----------------------------DVRVVKSKVGQ------ 129 (393)
T ss_dssp -----------CEEEEEESSHHHHHHHHHHHHTTC----------------------------EEEEEECCTTC------
T ss_pred -----------CEEEEECCCcchHHHHHHHHHcCC----------------------------eeEEEeCCCCC------
Confidence 5799999999984211110 0000 01111111000
Q ss_pred ccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC
Q 002941 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (863)
Q Consensus 575 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g 654 (863)
..| .+.+++.+.+ .++.+|+++.. ++..|.+.+ +++|.++|++||
T Consensus 130 ---------------~~d--------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~~~~~~~ 174 (393)
T 2huf_A 130 ---------------SLS--------LDEIRDALLI-------HKPSVLFLTQG-DSSTGVLQG----LEGVGALCHQHN 174 (393)
T ss_dssp ---------------CCC--------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHTT
T ss_pred ---------------CCC--------HHHHHHHHhc-------cCCcEEEEEcc-CCCccccCC----HHHHHHHHHHcC
Confidence 011 2445566642 13456777776 899998876 899999999999
Q ss_pred CeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHHhhhcCCc-cceee----------
Q 002941 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDSK-LKALL---------- 721 (863)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~~l~~~~~-~~~~~---------- 721 (863)
+++|+||++ ++|.. .+....+ .+|++++ +|+++|+ .++|++++++++++.+..... ...+.
T Consensus 175 ~~li~D~a~-~~~~~--~~~~~~~--~~d~~~~s~sK~l~g~-~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (393)
T 2huf_A 175 CLLIVDTVA-SLGGA--PMFMDRW--EIDAMYTGSQKVLGAP-PGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYW 248 (393)
T ss_dssp CEEEEECTT-TBTTB--CCCTTTT--TCSEEECCSSSTTCCC-SSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHT
T ss_pred CEEEEEccc-ccCCC--Ccchhhc--CccEEEECCCcccccC-CCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhh
Confidence 999999998 46543 2222222 4798876 5998865 567999999999988764210 01111
Q ss_pred -----cccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec-ccceEEEEEEccC
Q 002941 722 -----HGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV-ALGTLCAIELQAA 794 (863)
Q Consensus 722 -----~~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr-g~Gl~~~iel~~~ 794 (863)
..+++ +.+..+++++.++|+.+.+.. .+++.+..+.+++.+.+.+.+. ....+.... ..+.++.+.+...
T Consensus 249 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 2huf_A 249 GCFGRPRIYHHTISSTLLYGLREAIAMACEEG-LPALIARHEDCAKRLYRGLQDA--GFELYADPKDRLSTVTTIKVPQG 325 (393)
T ss_dssp TCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHT--TCCBSSCGGGBCTTEEEEECCTT
T ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHc--CCeeccCccccCCcEEEEEcCCC
Confidence 11222 346677777778888764322 2333444444455444443332 222221111 1245777777421
Q ss_pred CcCCCCchHHHHHHHHHHHHC-CcEEEec-----CCEEEEec-CCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMC-GPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-----g~~lr~~p-pl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
. ...++.+.|+++ ||++++. ++.+|+.+ ++.++++++++++++|+++++++.
T Consensus 326 ~--------~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~ 384 (393)
T 2huf_A 326 V--------DWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVK 384 (393)
T ss_dssp C--------CHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred C--------CHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 1 145688888865 9999863 37899987 556789999999999999987764
No 151
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.75 E-value=5.5e-16 Score=171.14 Aligned_cols=339 Identities=13% Similarity=0.039 Sum_probs=209.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCC-----CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~-----~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAv 474 (863)
-|||..+. +. .+|.+.+|+.+++.+........+ ..+...++.++|+++++.+ .+.++|+++|++|+
T Consensus 2 iyld~~~~------~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~~~a~ 73 (382)
T 4hvk_A 2 AYFDYTSA------KP-VDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG-GGTVVFTSGATEAN 73 (382)
T ss_dssp CBCBTTTC------CC-CCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCT-TEEEEEESSHHHHH
T ss_pred EeecCCCc------CC-CCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCC-cCeEEEECCchHHH
Confidence 37775542 23 579999999999987422111111 1234568889999988753 35799999999999
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccc
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (863)
+.+++.... ++... | ..||+....|++.......+.. . + .
T Consensus 74 ~~~~~~~~~-~~~~~----g------------d~vi~~~~~~~~~~~~~~~~~~-~---g-----------~-------- 113 (382)
T 4hvk_A 74 NLAIIGYAM-RNARK----G------------KHILVSAVEHMSVINPAKFLQK-Q---G-----------F-------- 113 (382)
T ss_dssp HHHHHHHHH-HHGGG----C------------CEEEEETTCCHHHHHHHHHHHH-T---T-----------C--------
T ss_pred HHHHHHhhh-hhcCC----C------------CEEEECCCCcHHHHHHHHHHHh-c---C-----------C--------
Confidence 999997732 21111 1 5788888887765433222110 0 0 0
Q ss_pred ccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 002941 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (863)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG 634 (863)
.+..++....+ .-| .+.+++.+. .++.+|++++. ++..|
T Consensus 114 ---~~~~v~~~~~~---------------------~~d--------~~~l~~~i~--------~~~~~v~~~~~-~nptG 152 (382)
T 4hvk_A 114 ---EVEYIPVGKYG---------------------EVD--------VSFIDQKLR--------DDTILVSVQHA-NNEIG 152 (382)
T ss_dssp ---EEEEECBCTTS---------------------CBC--------HHHHHHHCC--------TTEEEEECCSB-CTTTC
T ss_pred ---EEEEeccCCCC---------------------CcC--------HHHHHHHhc--------cCceEEEEECC-CCCce
Confidence 00111111000 011 244555553 35678999997 89999
Q ss_pred ceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHHhhh
Q 002941 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFV 712 (863)
Q Consensus 635 ~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~~l~ 712 (863)
.+.+ +++|.++|++||+ +|+||+|+ +|.. .+..+.++ +|++++ +|.+ |+ ..+|+++++++. .+.
T Consensus 153 ~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~~--~~~~~~~~--~d~~~~s~~K~~-g~-~g~g~~~~~~~~--~~~ 218 (382)
T 4hvk_A 153 TIQP----VEEISEVLAGKAA-LHIDATAS-VGQI--EVDVEKIG--ADMLTISSNDIY-GP-KGVGALWIRKEA--KLQ 218 (382)
T ss_dssp BBCC----HHHHHHHHSSSSE-EEEECTTT-BTTB--CCCHHHHT--CSEEEEESGGGT-SC-TTCEEEEEETTC--CCC
T ss_pred eeCC----HHHHHHHHHHcCE-EEEEhHHh-cCCC--CCCchhcC--CCEEEEeHHHhc-CC-CceEEEEEcCcc--CcC
Confidence 8876 8899999999999 99999994 4322 22233333 577755 5954 33 358888888764 121
Q ss_pred cCCc-cceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc----cceEE
Q 002941 713 GDSK-LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA----LGTLC 787 (863)
Q Consensus 713 ~~~~-~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg----~Gl~~ 787 (863)
.... ........+.+.++.+++++.++++.+++ ..++..+..+.+++.+. +.+.+.|.+.-... .+.++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~--~~~~~~~~~~~~~~~l~----~~L~~~~~~~~~~~~~~~~~~~~ 292 (382)
T 4hvk_A 219 PVILGGGQENGLRSGSENVPSIVGFGKAAEITAM--EWREEAERLRRLRDRII----DNVLKIEESYLNGHPEKRLPNNV 292 (382)
T ss_dssp CSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH----HHHTTSTTEEECSCSSSBCTTEE
T ss_pred cccccCCCcCccccCCcCHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHH----HHHhcCCCeEEeCCccccCCCEE
Confidence 1000 00000111344578888888888886642 33445555555555443 33445554432221 23466
Q ss_pred EEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec------------------------CCEEEEecCCCCcHHHHHHHH
Q 002941 788 AIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 788 ~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~------------------------g~~lr~~ppl~~t~eeid~~v 843 (863)
.+.+.... ...+.+.|.++||++++. .+.+|+.+...+|++++++++
T Consensus 293 ~~~~~~~~---------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~ 363 (382)
T 4hvk_A 293 NVRFSYIE---------GESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLL 363 (382)
T ss_dssp EEEETTCC---------HHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHH
T ss_pred EEEECCCC---------HHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHH
Confidence 67664322 456888999999999864 478999988889999999999
Q ss_pred HHHHHHHHHHHHH
Q 002941 844 LKLYQRLEEFDKV 856 (863)
Q Consensus 844 ~~L~~~l~~l~~~ 856 (863)
++|+++++++.+.
T Consensus 364 ~~l~~~~~~~~~~ 376 (382)
T 4hvk_A 364 EVLPGVIERLRSM 376 (382)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887653
No 152
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.75 E-value=2.6e-17 Score=185.20 Aligned_cols=321 Identities=12% Similarity=0.041 Sum_probs=201.7
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.|+|+.++... + .|++.+|+.+++++..+ ...+...+|.++|+++++. +.++|++||++|++.+++
T Consensus 31 ~~id~~~~~~~--~----~~~v~~a~~~~~~~~~y-----~~~~~~~~l~~~la~~~~~---~~~v~~~~Gt~a~~~~l~ 96 (399)
T 2oga_A 31 PFLDLKAAYEE--L----RAETDAAIARVLDSGRY-----LLGPELEGFEAEFAAYCET---DHAVGVNSGMDALQLALR 96 (399)
T ss_dssp CSCCHHHHHHH--T----HHHHHHHHHHHHHHTCC-----SSSHHHHHHHHHHHHHTTS---SEEEEESCHHHHHHHHHH
T ss_pred cccccCcCCCC--C----CHHHHHHHHHHHhcCCC-----CCchhHHHHHHHHHHHHCC---CeEEEecCHHHHHHHHHH
Confidence 78998876554 2 28999999999876322 1346788999999999873 578999999999999998
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.+ + . . .| .+|++...+||+... ++...|.. +
T Consensus 97 ~~-~-~--~----~g------------d~vl~~~~~~~~~~~-~~~~~g~~----------------------------~ 127 (399)
T 2oga_A 97 GL-G-I--G----PG------------DEVIVPSHTYIASWL-AVSATGAT----------------------------P 127 (399)
T ss_dssp HT-T-C--C----TT------------CEEEEESSSCTHHHH-HHHHTTCE----------------------------E
T ss_pred Hh-C-C--C----Cc------------CEEEECCCccHHHHH-HHHHCCCE----------------------------E
Confidence 76 1 0 0 12 579999999998433 33222100 0
Q ss_pred eeecCcc-hhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 560 WILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 560 ~~~~~P~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
..++... .+ ..| .+.+++.+. .++.+|++++ ..|.+.+
T Consensus 128 ~~~~~~~~~~---------------------~~d--------~~~l~~~i~--------~~~~~v~~~n----~tG~~~~ 166 (399)
T 2oga_A 128 VPVEPHEDHP---------------------TLD--------PLLVEKAIT--------PRTRALLPVH----LYGHPAD 166 (399)
T ss_dssp EEECBCSSSS---------------------SBC--------HHHHHHHCC--------TTEEEECCBC----GGGCCCC
T ss_pred EEEecCCCCC---------------------CcC--------HHHHHHhcC--------CCCeEEEEeC----CcCCccC
Confidence 0111100 00 011 234555553 2467777544 3465554
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec----cccCC-CCCCceeeecc-HHHHHhhh
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTG-GVIPLAATLAT-NAVFDSFV 712 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s----KgLgg-G~~Pigav~~~-~~i~~~l~ 712 (863)
+++|.++|++||+++|+||+++ +|.... ...++..+|++++| |.+++ | ++|+++++ +++++.+.
T Consensus 167 ----l~~i~~l~~~~~~~li~Dea~~-~g~~~~---~~~~~~~~di~~~S~~~sK~~~~~G--~~g~~~~~~~~~~~~l~ 236 (399)
T 2oga_A 167 ----MDALRELADRHGLHIVEDAAQA-HGARYR---GRRIGAGSSVAAFSFYPGKNLGCFG--DGGAVVTGDPELAERLR 236 (399)
T ss_dssp ----HHHHHHHHHHHTCEECEECTTC-TTCEET---TEETTCTTCEEEEECCTTSSSCCSS--CCEEEEESCHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCEEEEECccc-ccCccC---CeecccccCEEEEeCCCCccCCcCC--ceEEEEeCCHHHHHHHH
Confidence 8999999999999999999995 432211 11234447999884 99987 6 78888886 88877654
Q ss_pred c---CCcccee---ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE--e--cc
Q 002941 713 G---DSKLKAL---LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR--V--VA 782 (863)
Q Consensus 713 ~---~~~~~~~---~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~--v--rg 782 (863)
. ......+ ..+.++..++++++++.++|+.+++ +.++.. .+.+.+ .+.+.+.+.+.- . .+
T Consensus 237 ~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~--~~~~~~----~~~~~l----~~~L~~~~g~~~~~~~~~~ 306 (399)
T 2oga_A 237 MLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDS--WNGRRS----ALAAEY----LSGLAGLPGIGLPVTAPDT 306 (399)
T ss_dssp HHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHHH--HHHHHH----HHHHHH----HHHTTTCTTCBCCCCCTTE
T ss_pred HHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHHH--HHHHHH----HHHHHH----HHHhccCCCccccCCCCCC
Confidence 2 1100000 1134456789999999999986632 223333 333332 233444432211 1 12
Q ss_pred cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC----------------------------CEEEEecCCCC
Q 002941 783 LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG----------------------------NVIYLMCGPCS 834 (863)
Q Consensus 783 ~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g----------------------------~~lr~~ppl~~ 834 (863)
.+.++.+.+.... ...+.+.|.++||++++.. +.+|+.++..+
T Consensus 307 ~~~~~~~~~~~~~---------~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~ 377 (399)
T 2oga_A 307 DPVWHLFTVRTER---------RDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHL 377 (399)
T ss_dssp ECCCSSEEEECSS---------HHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTC
T ss_pred cceeEEEEEECCC---------HHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCC
Confidence 2232223332221 4578889999999997531 46999888889
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~~l 853 (863)
|++|+++++++|+++++++
T Consensus 378 t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 378 ERPQALRVIDAVREWAERV 396 (399)
T ss_dssp CHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999887654
No 153
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.74 E-value=4.9e-17 Score=178.21 Aligned_cols=319 Identities=14% Similarity=0.029 Sum_probs=202.2
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~ 496 (863)
.+|++.+|+.+++.. +. .....+...++.++|+++++.+ .+.+++++||++|++.+++.+++ .|
T Consensus 12 ~~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~g~~-~~~i~~~~g~t~a~~~~~~~~~~---------~g-- 75 (352)
T 1iug_A 12 LHPKALEALARPQLH--HR--TEAAREVFLKARGLLREAFRTE-GEVLILTGSGTLAMEALVKNLFA---------PG-- 75 (352)
T ss_dssp CCHHHHHHHHSCCCC--TT--SHHHHHHHHHHHHHHHHHHTCS-SEEEEEESCHHHHHHHHHHHHCC---------TT--
T ss_pred CCHHHHHHhccCCCC--cc--CHHHHHHHHHHHHHHHHHhCCC-CceEEEcCchHHHHHHHHHhccC---------CC--
Confidence 479999999877642 10 0011234678999999988753 35899999999999999987621 12
Q ss_pred CCCccccccccEEEEecCCCccCccccc-eecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccc
Q 002941 497 GKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (863)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~gal-s~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (863)
.+|++...+||+.....+ ...|. .+..++.+..+
T Consensus 76 ----------d~vl~~~~~~~~~~~~~~~~~~g~----------------------------~~~~v~~~~~~------- 110 (352)
T 1iug_A 76 ----------ERVLVPVYGKFSERFYEIALEAGL----------------------------VVERLDYPYGD------- 110 (352)
T ss_dssp ----------CEEEEEECSHHHHHHHHHHHHTTC----------------------------EEEEEECCTTC-------
T ss_pred ----------CeEEEEeCCchhHHHHHHHHHcCC----------------------------ceEEEeCCCCC-------
Confidence 579999999998641111 00010 00111111000
Q ss_pred cccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc--
Q 002941 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR-- 653 (863)
Q Consensus 576 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~-- 653 (863)
.-|. + .++ . .++.+|+++.. ++..|.+.+ +++|.++|++|
T Consensus 111 --------------~~d~--------~----~l~----~---~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~ 152 (352)
T 1iug_A 111 --------------TPRP--------E----DVA----K---EGYAGLLLVHS-ETSTGALAD----LPALARAFKEKNP 152 (352)
T ss_dssp --------------CCCT--------T----TSC----C---SSCSEEEEESE-ETTTTEECC----HHHHHHHHHHHCT
T ss_pred --------------CCCH--------H----HHh----c---cCCcEEEEEEe-cCCcceecC----HHHHHHHHHhhCC
Confidence 0010 0 111 1 23457788876 899998876 89999999999
Q ss_pred CCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHHhhhcCC-------cccee-ecc
Q 002941 654 KIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDS-------KLKAL-LHG 723 (863)
Q Consensus 654 gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~~l~~~~-------~~~~~-~~~ 723 (863)
|+++|+||+|+ +|... +....+ .+|++++ +|++.|+ ..+|++++++++++.+.... ..... ...
T Consensus 153 ~~~li~D~a~~-~~~~~--~~~~~~--~~d~~~~s~~K~~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (352)
T 1iug_A 153 EGLVGADMVTS-LLVGE--VALEAM--GVDAAASGSQKGLMCP-PGLGFVALSPRALERLKPRGYYLDLARELKAQKEGE 226 (352)
T ss_dssp TCEEEEECTTT-BTTBC--CCSGGG--TCSEEEEESSSTTCCC-SCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTC
T ss_pred CCEEEEECCcc-ccCcc--eecccc--CeeEEEecCcccccCC-CceeEEEECHHHHHHhhCCCceeeHHHHHhhcccCC
Confidence 99999999994 65432 222333 3788755 6988876 56899999999876521100 00000 012
Q ss_pred cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchH
Q 002941 724 HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSL 803 (863)
Q Consensus 724 ~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~ 803 (863)
.+++.++.+++++.++++.+++. .+++.+..+.+++.+.+.+.+. ....+... ..+.++.+.+.+..
T Consensus 227 ~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~-~~~~~~~~~~~~~~-------- 293 (352)
T 1iug_A 227 SAWTPAINLVLAVAAVLEEVLPR--LEEHLALKAWQNALLYGVGEEG--GLRPVPKR-FSPAVAAFYLPEGV-------- 293 (352)
T ss_dssp CSSCCCHHHHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHHHHHHT--TCEESCSS-BCTTCEEEECCTTC--------
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC--CCcccccc-cCCeEEEEEcCCCC--------
Confidence 24456888899999999987543 3445555555555554444331 22111110 25678888775321
Q ss_pred HHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 804 YAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 804 ~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
...++.+.|.++||++++. .+.+|+.++..++++++++++++|+++++++
T Consensus 294 ~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 294 PYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp CHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 1467888999999999874 3789999888789999999999999887654
No 154
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.74 E-value=6e-17 Score=181.44 Aligned_cols=216 Identities=9% Similarity=-0.076 Sum_probs=140.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv- 680 (863)
+.+++.+.+ .++++|++.|... |... .+++|.++|++||++||+||+|+ +|+++... ...++
T Consensus 153 ~~l~~~i~~-------~~~~~v~~~~~~~---~~~~----~l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~--~~~~~~ 215 (405)
T 2vi8_A 153 DDVREKARL-------HRPKLIVAAAAAY---PRII----DFAKFREIADEVGAYLMVDMAHI-AGLVAAGL--HPNPVP 215 (405)
T ss_dssp HHHHHHHHH-------HCCSEEEECCSSC---CSCC----CHHHHHHHHHHHTCEEEEECTTT-HHHHHTTS--SCCSTT
T ss_pred HHHHHHHHh-------cCCeEEEEeCCCC---CccC----CHHHHHHHHHHcCCEEEEEcccc-ccccccCc--CCCccc
Confidence 445666642 1245677765312 3222 28999999999999999999997 66654311 11222
Q ss_pred CCcEE--EeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCc-cHHHHHHHHHHHHHhcChhhHHhHHHHHH
Q 002941 681 VPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSA-HALGCAAAAKSIKWFKDPQTNHNIIPERR 757 (863)
Q Consensus 681 ~PDiv--t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~-~pla~AAalAaL~~l~~~~l~~~l~~~~~ 757 (863)
.+|++ +++|+++|+ .. |++++++++++.+... ...+++++ ++..++++.++++.+++. ..+++.+..+
T Consensus 216 ~~di~~~s~sK~~~g~-~g-G~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~aa~~~al~~~~~~-~~~~~~~~~~ 286 (405)
T 2vi8_A 216 YAHFVTTTTHKTLRGP-RG-GMILCQEQFAKQIDKA------IFPGIQGGPLMHVIAAKAVAFGEALQD-DFKAYAKRVV 286 (405)
T ss_dssp TCSEEEEESSSTTCCC-SC-EEEEECHHHHHHHHHH------HTTTTCSSCCHHHHHHHHHHHHHHHSH-HHHHHHHHHH
T ss_pred cCCEEEEeccccCCCC-CC-eEEEEcHHHHHHHHhh------hcccccCCCCHHHHHHHHHHHHHHHhh-hHHHHHHHHH
Confidence 58887 789999865 23 8899999998877531 12234444 788888888899877552 2334444444
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----------CCEE
Q 002941 758 ILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----------GNVI 826 (863)
Q Consensus 758 ~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----------g~~l 826 (863)
.+++.+.+.+.+. ..+.+ ...+.|.++.+.+.... .....+.+.|.++||++++. .+.+
T Consensus 287 ~~~~~l~~~L~~~--g~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~i 356 (405)
T 2vi8_A 287 DNAKRLASALQNE--GFTLV-SGGTDNHLLLVDLRPQQ-------LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGI 356 (405)
T ss_dssp HHHHHHHHHHHHT--TCEEG-GGSCSSSEEEEECGGGT-------CCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEE
T ss_pred HHHHHHHHHHHhC--CCeEe-cCCCCceEEEEEccCCC-------CCHHHHHHHHHHcCceeccCcCccccCCCCCCCce
Confidence 5555444443332 22111 11245788888886421 01456788889999999873 2679
Q ss_pred EEecCC----CCcHHHHHHHHHHHHHHHHHH
Q 002941 827 YLMCGP----CSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 827 r~~ppl----~~t~eeid~~v~~L~~~l~~l 853 (863)
|++++. .++++++++++++|+++++++
T Consensus 357 Ris~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 387 (405)
T 2vi8_A 357 RIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV 387 (405)
T ss_dssp EEECHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred EEeeeeeeecCCCHHHHHHHHHHHHHHHhcc
Confidence 998776 578999999999999998765
No 155
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.74 E-value=9e-16 Score=170.10 Aligned_cols=339 Identities=12% Similarity=0.013 Sum_probs=209.8
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCC-----ChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-----YEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~-----~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAv 474 (863)
-|||+.++ |+ .+|+|.+|+.+++.+........+. .+...++.++|+++++.+ .+.++|++||++|+
T Consensus 2 ~yld~~~~------~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~ 73 (382)
T 4eb5_A 2 AYFDYTSA------KP-VDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG-GGTVVFTSGATEAN 73 (382)
T ss_dssp CBCBTTTC------CC-CCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCT-TEEEEEESSHHHHH
T ss_pred eeeccCCC------CC-CCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEcCchHHHH
Confidence 47786553 44 6899999999998863211111111 245678999999988743 35899999999999
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccc
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (863)
+.+++.+.+ ++... | ..|++...+|++.......+.. .+ .
T Consensus 74 ~~~~~~l~~-~~~~~----g------------d~Vl~~~~~~~~~~~~~~~~~~----~g-----------~-------- 113 (382)
T 4eb5_A 74 NLAIIGYAM-RNARK----G------------KHILVSAVEHMSVINPAKFLQK----QG-----------F-------- 113 (382)
T ss_dssp HHHHHHHHH-HHGGG----C------------CEEEEETTCCHHHHHHHHHHTT----TT-----------C--------
T ss_pred HHHHHHHHh-hccCC----C------------CEEEECCCcchHHHHHHHHHHh----CC-----------c--------
Confidence 999998742 21111 2 5799999988876433322110 00 0
Q ss_pred ccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 002941 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (863)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG 634 (863)
.+..++....+ ..| .+.+++.+. .++.+|+++.. ++..|
T Consensus 114 ---~~~~v~~~~~~---------------------~~d--------~~~l~~~i~--------~~~~~v~~~~~-~nptG 152 (382)
T 4eb5_A 114 ---EVEYIPVGKYG---------------------EVD--------VSFIDQKLR--------DDTILVSVQHA-NNEIG 152 (382)
T ss_dssp ---EEEEECBCTTS---------------------CBC--------HHHHHHHCC--------TTEEEEECCSB-CTTTC
T ss_pred ---EEEEeccCCCC---------------------ccC--------HHHHHHHhc--------CCCeEEEEecc-CCCcc
Confidence 00111111000 011 234555553 24678888887 89999
Q ss_pred ceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHHhhh
Q 002941 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFV 712 (863)
Q Consensus 635 ~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~~l~ 712 (863)
.+.+ +++|.++|++||++ |+||+|+ +|... +....+ .+|++++ +|.++ ...+|+++++++. .+.
T Consensus 153 ~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~~--~~~~~~--~~di~~~s~sK~~g--~~g~G~~~~~~~~--~l~ 218 (382)
T 4eb5_A 153 TIQP----VEEISEVLAGKAAL-HIDATAS-VGQIE--VDVEKI--GADMLTISSNDIYG--PKGVGALWIRKEA--KLQ 218 (382)
T ss_dssp BBCC----HHHHHHHHTTSSEE-EEECTTT-BTTBC--CCHHHH--TCSEEEEETGGGTC--CSSCEEEEEETTC--CCC
T ss_pred ccCC----HHHHHHHHHHCCCE-EEEcchh-cCCcc--cCcccc--CCCEEEeehHHhcC--CCceEEEEEcccc--ccC
Confidence 8876 89999999999999 9999995 65432 222223 4688755 69643 1237888888763 111
Q ss_pred cCCccc-eeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc----cceEE
Q 002941 713 GDSKLK-ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA----LGTLC 787 (863)
Q Consensus 713 ~~~~~~-~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg----~Gl~~ 787 (863)
..-... .......++.++.+++++.++++.+++ + .+++.+..+.+++.+. +.+.+.|.+.-+.. .+.++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~-~-~~~~~~~~~~~~~~l~----~~L~~~~~~~~~~~~~~~~~~~~ 292 (382)
T 4eb5_A 219 PVILGGGQENGLRSGSENVPSIVGFGKAAEITAM-E-WREEAERLRRLRDRII----DNVLKIEESYLNGHPEKRLPNNV 292 (382)
T ss_dssp CSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHH----HHHTTSTTEEECSCSSSBCTTEE
T ss_pred ceecCCCccccccCCCccHHHHHHHHHHHHHHHH-h-HHHHHHHHHHHHHHHH----HHHhhCCCeEEeCCcccCCCCEE
Confidence 100000 000112234577788888888887653 2 3444444455555443 33444554432222 25677
Q ss_pred EEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec------------------------CCEEEEecCCCCcHHHHHHHH
Q 002941 788 AIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 788 ~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~------------------------g~~lr~~ppl~~t~eeid~~v 843 (863)
.+.+.... ...+.+.|.++||.+++. .+.+|+.+...++++++++++
T Consensus 293 ~~~~~~~~---------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~ 363 (382)
T 4eb5_A 293 NVRFSYIE---------GESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLL 363 (382)
T ss_dssp EEEETTSC---------HHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHH
T ss_pred EEEeCCcC---------HHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHH
Confidence 77775221 456888889999999863 368999987788999999999
Q ss_pred HHHHHHHHHHHHH
Q 002941 844 LKLYQRLEEFDKV 856 (863)
Q Consensus 844 ~~L~~~l~~l~~~ 856 (863)
++|+++++++.+.
T Consensus 364 ~~l~~~~~~~~~~ 376 (382)
T 4eb5_A 364 EVLPGVIERLRSM 376 (382)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887653
No 156
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.73 E-value=6.2e-17 Score=181.80 Aligned_cols=328 Identities=14% Similarity=0.030 Sum_probs=201.1
Q ss_pred cHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeE-EEeCChhhHHHHHHHHHHHHHHhhcccccccc
Q 002941 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v-~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~ 496 (863)
.+.+.+++.+++.+...........+...++.++|+++++.+ .+.+ ++++||++|++.+++..+. .|
T Consensus 19 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~~~~~~~s~t~al~~~~~~l~~---------~g-- 86 (416)
T 3isl_A 19 PVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTK-NRWAYPIDGTSRAGIEAVLASVIE---------PE-- 86 (416)
T ss_dssp SCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCC-CSEEEEEESCHHHHHHHHHHHHCC---------TT--
T ss_pred CcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCC-CCcEEEecCcHHHHHHHHHHHhcC---------CC--
Confidence 334445555555442221111112345778999999988754 2444 4899999999999986521 12
Q ss_pred CCCccccccccEEEEecCCCccCccc-cceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccc
Q 002941 497 GKDTTEKCIELKVLALKGSYHGDTLG-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (863)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~g-als~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (863)
.+||+...+||+.... .....|. .+..++.+...
T Consensus 87 ----------d~Vl~~~~~~~~~~~~~~~~~~g~----------------------------~~~~v~~~~~~------- 121 (416)
T 3isl_A 87 ----------DDVLIPIYGRFGYLLTEIAERYGA----------------------------NVHMLECEWGT------- 121 (416)
T ss_dssp ----------CEEEEEESSHHHHHHHHHHHHTTC----------------------------EEEEEECCTTC-------
T ss_pred ----------CEEEEecCCcccHHHHHHHHhcCC----------------------------eeEEEecCCCC-------
Confidence 6799999999984322 1111110 01111111000
Q ss_pred cccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCC
Q 002941 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (863)
Q Consensus 576 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gi 655 (863)
.-| .+.+++.+.+ +++.+|+++.+ ++..|.+.+ +++|.++|++||+
T Consensus 122 --------------~~d--------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~ 167 (416)
T 3isl_A 122 --------------VFD--------PEDIIREIKK-------VKPKIVAMVHG-ETSTGRIHP----LKAIGEACRTEDA 167 (416)
T ss_dssp --------------CCC--------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CHHHHHHHHHTTC
T ss_pred --------------CCC--------HHHHHHHHhh-------CCCcEEEEEcc-CCCCceecC----HHHHHHHHHHcCC
Confidence 011 2456666642 23567888886 899998776 8999999999999
Q ss_pred eEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCC------------------
Q 002941 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDS------------------ 715 (863)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~------------------ 715 (863)
++|+||+|+ +|.. .+..+.+ .+|+++++ |++.|+ .++|++++++++++.+....
T Consensus 168 ~li~D~a~~-~~~~--~~~~~~~--~~d~~~~s~~K~l~g~-~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg 241 (416)
T 3isl_A 168 LFIVDAVAT-IGGC--EVKVDEW--KIDAAIGGTQKCLSVP-SGMAPITYNERVADVIAARKKVERGIATQADRAALSGN 241 (416)
T ss_dssp EEEEECTTT-TTTS--CCCTTTT--TCSEEECCSSSTTCCC-SSEEEEEECHHHHHHHHTC------------------C
T ss_pred EEEEECCcc-ccCC--Ccchhhc--CCCEEEecCccccCCC-CCeEEEEECHHHHHHhhccccccccccccccchhccCC
Confidence 999999995 4322 1222222 37888764 998887 68999999999988776310
Q ss_pred -ccce------------eecc-cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-
Q 002941 716 -KLKA------------LLHG-HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV- 780 (863)
Q Consensus 716 -~~~~------------~~~~-~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v- 780 (863)
.... .... ...+.+..+++++.++++.+++.+ .+++.+..+.+++.+.+.+.+. ....+...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~ 318 (416)
T 3isl_A 242 RPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEG-LETRFERHRHHEAALAAGIKAM--GLRLFGDDS 318 (416)
T ss_dssp CCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHT--TCCBCSCGG
T ss_pred CCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHc--CCEeccCcc
Confidence 0000 0011 123457888888888998775432 2344444445555544444331 22221111
Q ss_pred cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec-----CCEEEEecCCCCcHHH-HHHHHHHHHHHHHHH
Q 002941 781 VALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMCGPCSSPEV-CSQLLLKLYQRLEEF 853 (863)
Q Consensus 781 rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-----g~~lr~~ppl~~t~ee-id~~v~~L~~~l~~l 853 (863)
...+.++.+.+.+.. ...++.+.|+++ ||.+++. ++.+|+.++...++++ +++++++|+++++++
T Consensus 319 ~~~~~~~~~~~~~~~--------~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 319 CKMPVVTCVEIPGGI--------DGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRH 390 (416)
T ss_dssp GBCTTEEEEECCTTC--------CHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEeCCCCC--------CHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHc
Confidence 123677878775321 156788889887 9999853 4799999766566655 999999999998865
No 157
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.73 E-value=3.2e-16 Score=181.06 Aligned_cols=330 Identities=13% Similarity=0.016 Sum_probs=200.0
Q ss_pred CcHHHHHHHHHHHHhcccccCCC------CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcc
Q 002941 417 LQIELARDMGYTAARFGHVMFPE------NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~------~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G 490 (863)
.+|++++++.++ +...+... ...+...+++++|+++++.+ ..++|+++|++|+..|++++ +.|...+|
T Consensus 78 ~~p~v~~~~~~~---~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~--~~~~~~~ggt~a~~~al~~~-~~~~~~~G 151 (474)
T 1wyu_B 78 YNPKLHEEAARL---FADLHPYQDPRTAQGALRLMWELGEYLKALTGMD--AITLEPAAGAHGELTGILII-RAYHEDRG 151 (474)
T ss_dssp CCCHHHHHHHHT---TSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHHHHHHHH-HHHHHHTT
T ss_pred CCHHHHHHHHHH---HHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCC--ceeecChHHHHHHHHHHHHH-HHHHHhcC
Confidence 579999888876 22221100 01245678899999988743 23568899999999999998 45543344
Q ss_pred ccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhh
Q 002941 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (863)
Q Consensus 491 ~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (863)
..++ +.+||+.. .+|+....++...|.. +..++....+
T Consensus 152 d~~~-----------r~~Vlv~~-~~h~~~~~~~~~~G~~----------------------------vv~v~~~~~~-- 189 (474)
T 1wyu_B 152 EGRT-----------RRVVLVPD-SAHGSNPATASMAGYQ----------------------------VREIPSGPEG-- 189 (474)
T ss_dssp CTTT-----------CCEEEEET-TSCTHHHHHHHHTTCE----------------------------EEEECBCTTS--
T ss_pred CccC-----------CCEEEEeC-CcChhhHHHHHHCCCE----------------------------EEEecCCCCC--
Confidence 2012 25677765 7888877665442210 1111111000
Q ss_pred hhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHH
Q 002941 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (863)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc 650 (863)
.-| .+.+++.+. +++++|+++.. +..|.+. +.+++|.++|
T Consensus 190 -------------------~~d--------~~~L~~~i~--------~~t~~v~~~~p--n~~G~~~---~~l~~i~~l~ 229 (474)
T 1wyu_B 190 -------------------EVD--------LEALKRELG--------PHVAALMLTNP--NTLGLFE---RRILEISRLC 229 (474)
T ss_dssp -------------------SBC--------HHHHHHHCS--------TTEEEEEECSS--CTTSCCC---TTHHHHHHHH
T ss_pred -------------------CcC--------HHHHHHhhC--------CCceEEEEECC--CCCcccC---CCHHHHHHHH
Confidence 011 244555553 35788888873 4577662 2389999999
Q ss_pred HHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCC----CCCceeeeccHHHHHhhhcC-----Cccce
Q 002941 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGG----VIPLAATLATNAVFDSFVGD-----SKLKA 719 (863)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG----~~Pigav~~~~~i~~~l~~~-----~~~~~ 719 (863)
++||+++|+||++. .+.+|.. ....+| +|++++ +|.+++. -.++|++++++++++.+... +....
T Consensus 230 ~~~g~~li~Dea~~-~~~~g~~-~~~~~g--~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~ 305 (474)
T 1wyu_B 230 KEAGVQLYYDGANL-NAIMGWA-RPGDMG--FDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFY 305 (474)
T ss_dssp HHHTCEEEEEGGGG-GGTTTTC-CHHHHT--CSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEE
T ss_pred HHcCCEEEEeCchh-hhhccCC-CcccCC--CcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeE
Confidence 99999999999995 3344432 122233 899988 8988532 15899999999988776420 00000
Q ss_pred e--------ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceE--EEE
Q 002941 720 L--------LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL--CAI 789 (863)
Q Consensus 720 ~--------~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~--~~i 789 (863)
+ ....++.+|+++++++.+.++.+..+. ++++.+.....++++.+.+.+. ....+ .+.+.+ +.+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~-l~~~~~~~~~~~~~l~~~L~~~--g~~~~---~~~~~~~~~~~ 379 (474)
T 1wyu_B 306 LDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEG-LKKAAALAVLNARYLKELLKEK--GYRVP---YDGPSMHEFVA 379 (474)
T ss_dssp EECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHT--TCBCS---SCSSCCSCEEE
T ss_pred ecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhc--CcEec---CCCCcceEEEE
Confidence 0 011345688999999999888653333 3333444444445444444332 22211 111122 233
Q ss_pred EEccCCcCCCCchHHHHHHHHHHHHCCcEEEe------cCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASLLKKLREDGVYMRP------LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p------~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.+... .....+.+.|.++||++.. .++.+|+.++..+|++++++++++|++++++
T Consensus 380 ~~~~~--------~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 380 QPPEG--------FRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp BCSTT--------CCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred EcCCC--------CCHHHHHHHHHHCCccccccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 33111 1256788999999998632 1478999988888999999999999988765
No 158
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.73 E-value=2e-16 Score=178.09 Aligned_cols=320 Identities=13% Similarity=0.026 Sum_probs=175.7
Q ss_pred cHHHHHHHHHHHH-hcccccC-C-----CCCChHHHHHH-HHHHhhcCCCCCCeE-EEeCChhhHHHHHHHHHHHHHHhh
Q 002941 418 QIELARDMGYTAA-RFGHVMF-P-----ENVYEPALECA-ELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRKFSFD 488 (863)
Q Consensus 418 ~p~V~~Ai~~q~~-~~~~~~~-~-----~~~~~~~~eLa-e~L~~~~p~~~~~~v-~f~~SGSeAvE~ALklA~r~~~~~ 488 (863)
+|+|++|+.+++. .+.+... . ....+...+++ +++++.++. +.+ ++++||++|++.|++.+++
T Consensus 45 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~v~~~~Gs~a~~~al~~~~~----- 116 (425)
T 3ecd_A 45 SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNA---GHANVQPHSGAQANGAVMLALAK----- 116 (425)
T ss_dssp CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTC---SEEECCCSSHHHHHHHHHHHHCC-----
T ss_pred CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCC---CCceeecCchHHHHHHHHHHccC-----
Confidence 6999999999984 4322210 0 01123556666 677777773 455 4599999999999987621
Q ss_pred ccccccccCCCccccccccEEEEecCCCccC-ccccce-ecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcc
Q 002941 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGD-TLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (863)
Q Consensus 489 ~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~-t~gals-~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ 566 (863)
.| .+||+...+||+. +.+... ..+. .+ ..+++|.
T Consensus 117 ----~g------------d~Vi~~~~~~~~~~~~~~~~~~~g~-~~---------------------------~~~~~~~ 152 (425)
T 3ecd_A 117 ----PG------------DTVLGMSLDAGGHLTHGAKPALSGK-WF---------------------------NALQYGV 152 (425)
T ss_dssp ----TT------------CEEEEECC-------------------C---------------------------EEEEECC
T ss_pred ----CC------------CEEEEcccccccceecchhhhhccc-ce---------------------------eeeecCC
Confidence 12 5799999999883 222211 1110 00 0011110
Q ss_pred hhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCCceeCCHHHHHH
Q 002941 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMVDPLFQRI 645 (863)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvE-PViqg~gG~~~pp~~fL~~ 645 (863)
.. +.+ .-| .+.+++.+.+ .++.+|+++ |. + |. ...+++
T Consensus 153 ~~----------------~~~--~~d--------~~~l~~~i~~-------~~~~~v~~~~~~-~---~~----~~~l~~ 191 (425)
T 3ecd_A 153 SR----------------DTM--LID--------YDQVEALAQQ-------HKPSLIIAGFSA-Y---PR----KLDFAR 191 (425)
T ss_dssp CT----------------TTS--SCC--------HHHHHHHHHH-------HCCSEEEEECSC-C---CS----CCCHHH
T ss_pred Cc----------------ccC--ccC--------HHHHHHHHhh-------cCCcEEEEcccc-C---CC----cCCHHH
Confidence 00 000 011 2456666642 134577777 64 4 22 234799
Q ss_pred HHHHHHHcCCeEEEeccc-ccccccCCcchhhhcCCCCcEEE--eccccCCCCCCceeeecc-HHHHHhhhcCCccceee
Q 002941 646 LVKECQNRKIPVIFDEVF-TGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLAT-NAVFDSFVGDSKLKALL 721 (863)
Q Consensus 646 Lrelc~~~gilLI~DEV~-TGfGRtG~~~a~e~~gv~PDivt--~sKgLggG~~Pigav~~~-~~i~~~l~~~~~~~~~~ 721 (863)
|+++|++||++||+||+| +|+.+.|..+.... .+|+++ ++|+++| ..+|+++++ +++.+.+... ..
T Consensus 192 i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~---~~di~~~s~sK~l~g--~~~g~~~~~~~~~~~~~~~~-----~~ 261 (425)
T 3ecd_A 192 FRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE---HAHVVTSTTHKTLRG--PRGGFVLTNDEEIAKKINSA-----VF 261 (425)
T ss_dssp HHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG---TCSEEEEESSGGGCC--CSCEEEEESCHHHHHHHHHH-----HC
T ss_pred HHHHHHHcCCEEEEECcChHhhhhcccccCchh---cCcEEEecCCcccCC--CCcEEEEeCCHHHHHHHHhh-----hC
Confidence 999999999999999995 56655555433211 268875 5699955 467888887 5777766531 11
Q ss_pred cccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe--cccceEEEEEEccCCcCCC
Q 002941 722 HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV--VALGTLCAIELQAAGCNAG 799 (863)
Q Consensus 722 ~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v--rg~Gl~~~iel~~~~~~~~ 799 (863)
++.+.+.++..++++.+++..+.+++ .+.+.++.+.+.+.+.+.+.+ .+. .-+ .+.+.++.+.+....
T Consensus 262 ~~~~~~~~~~~~~a~~~a~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~----~g~-~~~~~~~~~~~~~~~~~~~~---- 331 (425)
T 3ecd_A 262 PGLQGGPLMHVIAGKAVAFGEALTDD-FKTYIDRVLANAQALGDVLKA----GGV-DLVTGGTDNHLLLVDLRPKG---- 331 (425)
T ss_dssp -----CCCHHHHHHHHHHHHHHTSHH-HHHHHHHHHHHHHHHHHHHHH----TTC-EEGGGSCSSSEEEEECGGGT----
T ss_pred ccccCCccHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHh----CCC-eeccCCCCceEEEEEeCCCC----
Confidence 22222334434443443443332222 223333333344433333322 221 112 145678888776421
Q ss_pred CchHHHHHHHHHHHHCCcEEE----ec-------CCEEEEecCCCCc----HHHHHHHHHHHHHHHHHH
Q 002941 800 YGSLYAASLLKKLREDGVYMR----PL-------GNVIYLMCGPCSS----PEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 800 ~~~~~~~~l~~~l~e~GV~~~----p~-------g~~lr~~ppl~~t----~eeid~~v~~L~~~l~~l 853 (863)
.....+.+.|.++||+++ |. .+.+|+.++..++ ++++++++++|++++++.
T Consensus 332 ---~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 332 ---LKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp ---CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 014567788889999998 32 1579998665544 999999999999999876
No 159
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.73 E-value=1.1e-16 Score=180.06 Aligned_cols=212 Identities=10% Similarity=-0.006 Sum_probs=125.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccc-ccccccCCcchhhhcC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TGFWRLGVETTADLLG 679 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~-TGfGRtG~~~a~e~~g 679 (863)
+.+++.+.+ .++++|++ +|. ++ ...+ +++|+++|++||++||+||+| .|+.+.|...... .
T Consensus 159 ~~l~~~i~~-------~~~~~v~~~~~~-~~---~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~--~ 221 (420)
T 3gbx_A 159 DEMAKLAKE-------HKPKMIIGGFSA-YS---GVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPV--P 221 (420)
T ss_dssp HHHHHHHHH-------HCCSEEEECCTT-CC---SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCST--T
T ss_pred HHHHHHHHh-------cCCeEEEEecCc-cC---CccC----HHHHHHHHHHcCCEEEEECCcchhceecccCCccc--c
Confidence 456666653 23556677 564 32 2333 899999999999999999997 4665555433221 1
Q ss_pred CCCcEEE--eccccCCCCCCceeeeccH---HHHHhhhcCCccceeecccCCCc-cHHHHHHHHHHHHHhcChhhHHhHH
Q 002941 680 CVPDIAC--YGKLLTGGVIPLAATLATN---AVFDSFVGDSKLKALLHGHSYSA-HALGCAAAAKSIKWFKDPQTNHNII 753 (863)
Q Consensus 680 v~PDivt--~sKgLggG~~Pigav~~~~---~i~~~l~~~~~~~~~~~~~T~~~-~pla~AAalAaL~~l~~~~l~~~l~ 753 (863)
.+|+++ ++|+++| ...|++++++ ++++.+... .+.+++++ +...++++.+++..+.+++ .+++.
T Consensus 222 -~~di~~~s~sK~~~g--~~gg~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~a~~~~~~~~-~~~~~ 291 (420)
T 3gbx_A 222 -HAHVVTTTTHKTLAG--PRGGLILAKGGDEELYKKLNSA------VFPSAQGGPLMHVIAGKAVALKEAMEPE-FKVYQ 291 (420)
T ss_dssp -TSSEEEEESSGGGCS--CSCEEEEESSCCHHHHHHHHHH------HC----CCCCHHHHHHHHHHHHHTTSHH-HHHHH
T ss_pred -cCCEEEeecccCCCC--CCceEEEEcCCcHHHHHHhhhh------cCCCCCCCcchhHHHHHHHHHHHHHhHh-HHHHH
Confidence 389987 6699974 3457788887 777776531 12222333 2333333333444332322 22333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEec--ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe-------c--
Q 002941 754 PERRILRELWDLELIQQISSHRTVQRVV--ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-------L-- 822 (863)
Q Consensus 754 ~~~~~l~~~l~~~l~~~~~~~p~v~~vr--g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p-------~-- 822 (863)
+.....++.+.+.+.+ .+ +.-+. ..+.++.+.+.... .....+.+.|.++||++.+ .
T Consensus 292 ~~~~~~~~~l~~~L~~----~g-~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~ 359 (420)
T 3gbx_A 292 QQVAKNAKAMVEVFLN----RG-YKVVSGGTENHLFLLDLVDKN-------LTGKEADAALGRANITVNKNSVPNDPKSP 359 (420)
T ss_dssp HHHHHHHHHHHHHHHH----TT-CEEGGGSCSSSEEEEECGGGT-------CCHHHHHHHHHHTTEECEEECCTTCSSCT
T ss_pred HHHHHHHHHHHHHHHh----cC-CeeccCCCCCeEEEEEcCCCC-------CCHHHHHHHHHHCCcEeccccCCCCcccc
Confidence 3333334433333322 22 22222 35677777775421 0145677788899999987 1
Q ss_pred --CCEEEEecCCC----CcHHHHHHHHHHHHHHHHH
Q 002941 823 --GNVIYLMCGPC----SSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 823 --g~~lr~~ppl~----~t~eeid~~v~~L~~~l~~ 852 (863)
.+.+|+.++.. ++++++++++++|++++++
T Consensus 360 ~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 360 FVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp TTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence 25699988765 4589999999999999865
No 160
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.73 E-value=4e-17 Score=184.76 Aligned_cols=238 Identities=13% Similarity=0.081 Sum_probs=158.1
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +.+++++||++|++++++++ + .| .+||+....|||
T Consensus 63 r~~~p~~~~l~~~la~l~g~---~~~~~~~sG~~Ai~~~~~l~-~---------~g------------d~Vi~~~~~y~~ 117 (400)
T 3nmy_A 63 RTHNPTRFAYERCVAALEGG---TRAFAFASGMAATSTVMELL-D---------AG------------SHVVAMDDLYGG 117 (400)
T ss_dssp TTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHTTS-C---------TT------------CEEEEESSCCHH
T ss_pred cCCCHHHHHHHHHHHHHhCC---CCEEEecCHHHHHHHHHHHc-C---------CC------------CEEEEeCCCchH
Confidence 45688899999999999873 58999999999999854433 1 12 579999999987
Q ss_pred Ccccccee-cCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHH
Q 002941 519 DTLGAMEA-QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLA 597 (863)
Q Consensus 519 ~t~gals~-t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 597 (863)
........ .. .. |+....+|. +|
T Consensus 118 ~~~~~~~~~~~--------------~~-------------g~~~~~v~~------------------------~d----- 141 (400)
T 3nmy_A 118 TFRLFERVRRR--------------TA-------------GLDFSFVDL------------------------TD----- 141 (400)
T ss_dssp HHHHHHHTHHH--------------HH-------------CCEEEEECT------------------------TS-----
T ss_pred HHHHHHHhhHh--------------hc-------------CeEEEEECC------------------------CC-----
Confidence 54332211 00 00 000011110 11
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhh
Q 002941 598 SIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677 (863)
Q Consensus 598 ~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~ 677 (863)
.+.+++.+. .++++|++|++ ++..|.+.+ +++|+++|++||++||+||+++. +... ....
T Consensus 142 ---~~~l~~~i~--------~~~~~v~~e~~-~np~G~~~~----l~~i~~la~~~g~~livDe~~~~-~~~~---~~~~ 201 (400)
T 3nmy_A 142 ---PAAFKAAIR--------ADTKMVWIETP-TNPMLKLVD----IAAIAVIARKHGLLTVVDNTFAS-PMLQ---RPLS 201 (400)
T ss_dssp ---HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTH-HHHC---CGGG
T ss_pred ---HHHHHHHhc--------cCCCEEEEECC-CCCCCeeec----HHHHHHHHHHcCCEEEEECCCcc-cccC---Chhh
Confidence 244555553 36789999997 999998876 99999999999999999999952 1222 2222
Q ss_pred cCCCCcEEEeccccCCCCCCcee--ee-ccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 678 LGCVPDIACYGKLLTGGVIPLAA--TL-ATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 678 ~gv~PDivt~sKgLggG~~Piga--v~-~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
+|..+.+.+++|.++|+..++|+ ++ .++++++.+.. +.+..++..+|+.++.++..++.+.. ..++..+
T Consensus 202 ~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~------~~~~~g~~~~~~~a~~~l~~l~~l~~--r~~~~~~ 273 (400)
T 3nmy_A 202 LGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAF------LQNSIGGVQGPFDSFLALRGLKTLPL--RMRAHCE 273 (400)
T ss_dssp GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHH------HHHHHCCBCCHHHHHHHHHHHTTHHH--HHHHHHH
T ss_pred cCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHH------HHHhcCCCCCHHHHHHHHHhHhHHHH--HHHHHHH
Confidence 34333344589999976567655 33 47788877653 12445667899999988888876531 2344444
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEcc
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~ 793 (863)
+++++. +.++++|.|..| +|.|.|+++++..
T Consensus 274 ~a~~l~--------~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~ 322 (400)
T 3nmy_A 274 NALALA--------QWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKG 322 (400)
T ss_dssp HHHHHH--------HHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred HHHHHH--------HHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCC
Confidence 444443 345678888877 8899999999964
No 161
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.73 E-value=2e-16 Score=176.61 Aligned_cols=326 Identities=12% Similarity=0.048 Sum_probs=204.1
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCC-eEEEeCChhhHHHHHHHHHHHHHHhhccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS-RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~-~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr 495 (863)
-+|++.+|+.+++.. + ...+..+...+|.++|+++++.+ .+ .+++++||++|++.+++.+++ .|
T Consensus 29 ~~~~v~~a~~~~~~~--~--~~~~~~~~~~~l~~~la~~~~~~-~~~~v~~~~g~t~al~~~~~~~~~---------~g- 93 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLS--N--FHAELFRTMDEVKDGLRYIFQTE-NRATMCVSGSAHAGMEAMLSNLLE---------EG- 93 (396)
T ss_dssp CCHHHHHHTTSCCCC--T--TCHHHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHHHHHHHHHHCC---------TT-
T ss_pred CCHHHHHHhcccccc--C--CChhHHHHHHHHHHHHHHHhCCC-CCcEEEECCcHHHHHHHHHHHhcC---------CC-
Confidence 368888877665421 1 00011234778999999998754 34 799999999999999987621 12
Q ss_pred cCCCccccccccEEEEecCCCccCcc-ccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcc
Q 002941 496 LGKDTTEKCIELKVLALKGSYHGDTL-GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (863)
Q Consensus 496 ~~~~~~~~~~r~~II~~~~sYHG~t~-gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~ 574 (863)
.+|++...+||+... ......|. .+..++.+..+
T Consensus 94 -----------d~vl~~~~~~~~~~~~~~~~~~g~----------------------------~~~~v~~~~~~------ 128 (396)
T 2ch1_A 94 -----------DRVLIAVNGIWAERAVEMSERYGA----------------------------DVRTIEGPPDR------ 128 (396)
T ss_dssp -----------CEEEEEESSHHHHHHHHHHHHTTC----------------------------EEEEEECCTTS------
T ss_pred -----------CeEEEEcCCcccHHHHHHHHHcCC----------------------------ceEEecCCCCC------
Confidence 579999999998531 11111110 01111111000
Q ss_pred ccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC
Q 002941 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (863)
Q Consensus 575 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g 654 (863)
..| .+.+++.+.+ .++.+|+++.. ++..|.+.+ +++|.++|++||
T Consensus 129 ---------------~~d--------~~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~ 173 (396)
T 2ch1_A 129 ---------------PFS--------LETLARAIEL-------HQPKCLFLTHG-DSSSGLLQP----LEGVGQICHQHD 173 (396)
T ss_dssp ---------------CCC--------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHTT
T ss_pred ---------------CCC--------HHHHHHHHHh-------CCCCEEEEECC-CCCCceecC----HHHHHHHHHHcC
Confidence 011 2445566642 13456777776 888998876 889999999999
Q ss_pred CeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCC-ccceee----------
Q 002941 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDS-KLKALL---------- 721 (863)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~-~~~~~~---------- 721 (863)
+++|+||+++ +|... ...+.+ .+|++++| |.++++ ..+|++++++++++.+.... +...+.
T Consensus 174 ~~li~Dea~~-~g~~~--~~~~~~--~~d~~~~s~~K~~~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (396)
T 2ch1_A 174 CLLIVDAVAS-LCGVP--FYMDKW--EIDAVYTGAQKVLGAP-PGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYW 247 (396)
T ss_dssp CEEEEECTTT-BTTBC--CCTTTT--TCCEEECCCC-CCCCC-SSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHT
T ss_pred CEEEEEcccc-ccCCc--cchhhc--CcCEEEEcCCccccCC-CCeEEEEECHHHHHhhhhccCcccceEechHHHHHhh
Confidence 9999999995 65432 222222 47998876 999887 67899999999888775311 000000
Q ss_pred ------cccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec--ccceEEEEEEcc
Q 002941 722 ------HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV--ALGTLCAIELQA 793 (863)
Q Consensus 722 ------~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr--g~Gl~~~iel~~ 793 (863)
....++.+..+++++.++|+.+.++ ..+++.+..+..++.+.+.+.+. ....+.... ..+.++.+.+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~ 324 (396)
T 2ch1_A 248 GCYDEPKRYHHTVASNLIFALREALAQIAEE-GLENQIKRRIECAQILYEGLGKM--GLDIFVKDPRHRLPTVTGIMIPK 324 (396)
T ss_dssp TCSSSCCCCCCCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHH--TCCBSSCSGGGBCTTEEEEECCT
T ss_pred hhhcccCCCCCCCcHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHC--CCeeccCCccccCCceEEEEcCC
Confidence 1122345777888889999876432 23344444555555554454433 232221111 234577777642
Q ss_pred CCcCCCCchHHHHHHHHHHHHC-CcEEEec-----CCEEEEec-CCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 794 AGCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMC-GPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 794 ~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-----g~~lr~~p-pl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.. ...++.+.|+++ ||++++. ++.+|+.+ ++.++++++++++++|+++++++.
T Consensus 325 ~~--------~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~ 384 (396)
T 2ch1_A 325 GV--------DWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH 384 (396)
T ss_dssp TC--------CHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred CC--------CHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 11 155788888875 9999873 47899987 567799999999999999987764
No 162
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.72 E-value=1.6e-15 Score=169.62 Aligned_cols=340 Identities=13% Similarity=0.037 Sum_probs=202.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc-ccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~A 477 (863)
..+|+..+. ..++ .+|.+.+|+.++++.... +....+..+...++++.+....+.. ..+.++++++|++|++.+
T Consensus 32 ~~i~l~~~~--~~~~--~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~ 107 (385)
T 1b5p_A 32 DLVALTAGE--PDFD--TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNL 107 (385)
T ss_dssp CCEECCCSS--CSSC--CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHH
T ss_pred CEEEecCCC--CCCC--CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHH
Confidence 455655442 2344 368999999988865211 1111122344555666665443321 136899999999999999
Q ss_pred HHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 478 LklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
++..++ .| .+|++...+|++....+... |.
T Consensus 108 ~~~l~~---------~g------------d~Vlv~~p~y~~~~~~~~~~-g~---------------------------- 137 (385)
T 1b5p_A 108 FQAILD---------PG------------DEVIVLSPYWVSYPEMVRFA-GG---------------------------- 137 (385)
T ss_dssp HHHHCC---------TT------------CEEEEEESCCTHHHHHHHHT-TC----------------------------
T ss_pred HHHhcC---------CC------------CEEEEcCCCchhHHHHHHHc-CC----------------------------
Confidence 986621 12 57999999998754322111 10
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
.+..++.... ..+ .-| .+.+++.+. +...+.+++.| ++..|.+
T Consensus 138 ~~~~v~~~~~-----------------~~~--~~d--------~~~l~~~l~-------~~~~~v~~~~p--~NPtG~~- 180 (385)
T 1b5p_A 138 VVVEVETLPE-----------------EGF--VPD--------PERVRRAIT-------PRTKALVVNSP--NNPTGAV- 180 (385)
T ss_dssp EEEEEECCGG-----------------GTT--CCC--------HHHHHTTCC-------TTEEEEEEESS--CTTTCCC-
T ss_pred EEEEeecCcc-----------------cCC--CCC--------HHHHHHhcC-------CCCEEEEEeCC--CCCCCCC-
Confidence 0011111100 000 011 133433332 22234455677 6778854
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccC-CCCCCceeeeccHHHHHhhhcC
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLg-gG~~Pigav~~~~~i~~~l~~~ 714 (863)
.+++.+++|.++|++||+++|+||++..|...|.......+.-..+++ +|||.++ .| +++|++++++++++.+...
T Consensus 181 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G-~RiG~~~~~~~~~~~l~~~ 259 (385)
T 1b5p_A 181 YPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTG-WRIGYACGPKEVIKAMASV 259 (385)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcc-cceEEEEeCHHHHHHHHHH
Confidence 478899999999999999999999998775444222222221112332 7899997 67 8999999999998887641
Q ss_pred CccceeecccCCCccHHHHHHHHHHHHHhc-ChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEEEEEc
Q 002941 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFK-DPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIELQ 792 (863)
Q Consensus 715 ~~~~~~~~~~T~~~~pla~AAalAaL~~l~-~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~iel~ 792 (863)
....+++.++++.+++.++|+..+ ..++.+++.+..+..++.+.+.+.+. .... .... |.++.+.+.
T Consensus 260 ------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~---~~~~~~~~~~~~~~ 328 (385)
T 1b5p_A 260 ------SRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL--GLKA---VRPSGAFYVLMDTS 328 (385)
T ss_dssp ------HHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCCB---CCCSBTTEEEEECT
T ss_pred ------HhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC--CCee---cCCCeeEEEEEecC
Confidence 233567788899998888886300 12334555555555566555554432 2221 1223 445555554
Q ss_pred cCCcCCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 793 AAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 793 ~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
... ....++.+.|.++||++.++ .+.+|+.. .++++++++++++|.++++
T Consensus 329 ~~~-------~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~--~~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 329 PIA-------PDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSY--ATSEENLRKALERFARVLG 383 (385)
T ss_dssp TTC-------SSHHHHHHHHHHTTEECEESGGGTCTTEEEEEC--CSCHHHHHHHHHHGGGGC-
T ss_pred CCC-------CCHHHHHHHHHHCCeEEecccccCCCCeEEEEe--cCCHHHHHHHHHHHHHHHh
Confidence 211 01456888888999999874 26899874 4788999999988877654
No 163
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.72 E-value=3.9e-17 Score=181.20 Aligned_cols=305 Identities=11% Similarity=0.108 Sum_probs=184.9
Q ss_pred HHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCc
Q 002941 421 LARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDT 500 (863)
Q Consensus 421 V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~ 500 (863)
+.+++.+.+....+ +..+...+|.++|+++++. +.++|++||++|++.+++.+ + . . +|
T Consensus 21 ~~~~~~~~~~~~~~-----~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~a~~~~~~~~-~-~----~--~g------ 78 (374)
T 3uwc_A 21 YLNDLREFIKTADF-----TLGAELEKFEKRFAALHNA---PHAIGVGTGTDALAMSFKML-N-I----G--AG------ 78 (374)
T ss_dssp HHHHHHHHHHHTCC-----SSCHHHHHHHHHHHHHTTC---SEEEEESCHHHHHHHHHHHT-T-C----C--TT------
T ss_pred HHHHHHHHHHcCCc-----ccChhHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHc-C-C----C--CC------
Confidence 56666665554322 3467789999999999984 58999999999999999876 1 0 0 12
Q ss_pred cccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcccccccc
Q 002941 501 TEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580 (863)
Q Consensus 501 ~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~ 580 (863)
.+|++...+||+........ |.. +..++....+
T Consensus 79 ------d~v~~~~~~~~~~~~~~~~~-g~~----------------------------~~~~~~~~~~------------ 111 (374)
T 3uwc_A 79 ------DEVITCANTFIASVGAIVQA-GAT----------------------------PVLVDSENGY------------ 111 (374)
T ss_dssp ------CEEEEESSSCHHHHHHHHHT-TCE----------------------------EEEECBCTTS------------
T ss_pred ------CEEEECCCccHHHHHHHHHc-CCE----------------------------EEEEecCCCC------------
Confidence 57999999998865433221 100 0011111000
Q ss_pred ccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEe
Q 002941 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD 660 (863)
Q Consensus 581 ~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~D 660 (863)
.-| .+.+++.+. .++.+|+ | .+..|...+ +++|.++|++||+++|+|
T Consensus 112 ---------~~d--------~~~l~~~~~--------~~~~~v~--~--~n~~G~~~~----~~~i~~~~~~~~~~li~D 158 (374)
T 3uwc_A 112 ---------VID--------PEKIEAAIT--------DKTKAIM--P--VHYTGNIAD----MPALAKIAKKHNLHIVED 158 (374)
T ss_dssp ---------SBC--------GGGTGGGCC--------TTEEEEC--C--BCGGGCCCC----HHHHHHHHHHTTCEEEEE
T ss_pred ---------CcC--------HHHHHHhCC--------CCceEEE--E--eCCcCCcCC----HHHHHHHHHHcCCEEEEe
Confidence 001 012222221 2456666 5 356676654 999999999999999999
Q ss_pred cccccccccCCcchhhhcCCCCcEEEec----cccCC-CCCCceeeecc-HHHHHhhhc---CCccc---eeecccCCCc
Q 002941 661 EVFTGFWRLGVETTADLLGCVPDIACYG----KLLTG-GVIPLAATLAT-NAVFDSFVG---DSKLK---ALLHGHSYSA 728 (863)
Q Consensus 661 EV~TGfGRtG~~~a~e~~gv~PDivt~s----KgLgg-G~~Pigav~~~-~~i~~~l~~---~~~~~---~~~~~~T~~~ 728 (863)
|+|+.+ ..+..+..+..+|++++| |++++ |. .|+++++ +++++.+.. ..... ....+.++..
T Consensus 159 ~~~~~g----~~~~~~~~~~~~d~~~~s~~~~K~l~~~g~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (374)
T 3uwc_A 159 ACQTIL----GRINDKFVGSWGQFACFSLHPLKNLNVWSD--AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRM 232 (374)
T ss_dssp CTTCTT----CEETTEETTSSSSEEEEECSSSSSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBC
T ss_pred CCCccC----ceeCCeeccccccEEEEeCCCCCcCCccce--eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCC
Confidence 999632 224445566668999888 99988 73 7777764 466555432 11000 0112445566
Q ss_pred cHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC-eeEe---c-ccceEEEEEEccCCcCCCCchH
Q 002941 729 HALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT-VQRV---V-ALGTLCAIELQAAGCNAGYGSL 803 (863)
Q Consensus 729 ~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~-v~~v---r-g~Gl~~~iel~~~~~~~~~~~~ 803 (863)
+++.++++++.++.++ ++.++..++.+++.+ .+.+.+. +.-. . +...++.+.+....
T Consensus 233 ~~~~aa~~~~~~~~~~--~~~~~~~~~~~~l~~--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 294 (374)
T 3uwc_A 233 DTIQAVIANRLMNQLE--TITEKRRGIAHLYDQ--------SFVDLSEFIDVPVRREGVYHVFHIYVLRVKY-------- 294 (374)
T ss_dssp CHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHH--------HTGGGTTTEECCCCCTTEECCCSSEEEEETT--------
T ss_pred CHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--------HhccCCCeEEeccCCCCCceeeEEEEEEcCC--------
Confidence 8888888777665442 233344443333333 2333332 2111 1 11111112222111
Q ss_pred HHHHHHHHHHHCCcEEEecC----------------------------CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 804 YAASLLKKLREDGVYMRPLG----------------------------NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 804 ~~~~l~~~l~e~GV~~~p~g----------------------------~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
...+.+.|.++||.+++.. +.+|+.+...+|++||++++++|++++++
T Consensus 295 -~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 295 -RDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp -HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 4678899999999987653 68899888889999999999999998764
No 164
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.71 E-value=1.8e-15 Score=165.11 Aligned_cols=312 Identities=13% Similarity=0.100 Sum_probs=199.6
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
+++|+.++. +++| -+|.+.+|+.++++.+. .++++...+|.++|+++++.. .+.++|++++++++..+++
T Consensus 17 ~~i~l~~n~--~~~~--~~~~v~~a~~~~~~~~~-----~y~~~~~~~lr~~la~~~~~~-~~~i~~t~G~~~~l~~~~~ 86 (337)
T 3p1t_A 17 QAVCLAFNE--NPEA--VEPRVQAAIAAAAARIN-----RYPFDAEPRVMRKLAEHFSCP-EDNLMLVRGIDECFDRISA 86 (337)
T ss_dssp CCEECSSCC--CCSC--CCHHHHHHHHHHGGGTT-----SCCTTHHHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHHH
T ss_pred CceEeeCCC--CCCC--CCHHHHHHHHHhhhhhc-----cCCCCchHHHHHHHHHHhCcC-HHHEEEeCCHHHHHHHHHH
Confidence 788888743 5677 47999999999877543 234567788999999988743 3689999999999998887
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.. . | .+|++...+|++....+... |. .+
T Consensus 87 ~~-~----------g------------d~vl~~~p~~~~~~~~~~~~-g~----------------------------~~ 114 (337)
T 3p1t_A 87 EF-S----------S------------MRFVTAWPGFDGYRARIAVS-GL----------------------------RH 114 (337)
T ss_dssp HS-T----------T------------SEEEEESSSCSHHHHHHTTS-CC----------------------------EE
T ss_pred hc-C----------C------------CeEEEeCCCcHHHHHHHHHc-CC----------------------------EE
Confidence 54 1 2 56999999998864332211 10 00
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..++....+ .-| .+ .+++. .+..+.++..| ++..|.+.+
T Consensus 115 ~~v~~~~~~---------------------~~d--------~~----~l~~~-----~~~~~v~i~~p--~nptG~~~~- 153 (337)
T 3p1t_A 115 FEIGLTDDL---------------------LLD--------PN----DLAQV-----SRDDCVVLANP--SNPTGQALS- 153 (337)
T ss_dssp EEECBCTTS---------------------SBC--------HH----HHTTC-----CTTEEEEEESS--CTTTCCCCC-
T ss_pred EEecCCCCC---------------------CCC--------HH----HHHhh-----cCCCEEEEeCC--CCCCCCCCC-
Confidence 111111000 011 12 23321 22334445555 788998887
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccC-CCCCCceeeeccHHHHHhhhcCCccc
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLK 718 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~~~ 718 (863)
.+++.++|+++++ +|+||++.+|+..+.... ...+..-.+.+++|.++ .| +++|++++++++++.+..
T Consensus 154 ---~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~-~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~l~~----- 222 (337)
T 3p1t_A 154 ---AGELDQLRQRAGK-LLIDETYVDYSSFRARGL-AYGENELVFRSFSKSYGLAG-LRLGALFGPSELIAAMKR----- 222 (337)
T ss_dssp ---HHHHHHHHHHCSE-EEEECTTGGGSSCSSSCC-CCBTTEEEEEESSSTTCCTT-TCCEEEECCHHHHHHHHT-----
T ss_pred ---HHHHHHHHHhCCc-EEEECCChhhcccccccc-ccCCCEEEEeeCchhccCcc-hheEEEEeCHHHHHHHHh-----
Confidence 6678899999997 566999998865543211 11111112337899997 78 899999999999998865
Q ss_pred eeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCC
Q 002941 719 ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA 798 (863)
Q Consensus 719 ~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~ 798 (863)
...+++.++++++++.++|+. .+..++..+.....++.+.+ .+.+++ +......|.++.+.+.+
T Consensus 223 ---~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~----~L~~~g-~~~~~~~~~~~~~~~~~----- 286 (337)
T 3p1t_A 223 ---KQWFCNVGTLDLHALEAALDN---DRAREAHIAKTLAQRRRVAD----ALRGLG-YRVASSEANFVLVENAA----- 286 (337)
T ss_dssp ---TSCTTCSCHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHH----HHHHTT-CCBCCCSSSEEEEECTT-----
T ss_pred ---hcCCCCCCHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHH----HHHHCc-CEECCCCCeEEEEEcCC-----
Confidence 234567788888888887763 22222222223333443333 333332 23345667777776542
Q ss_pred CCchHHHHHHHHHHHHCCcEEEecC-----CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 799 GYGSLYAASLLKKLREDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 799 ~~~~~~~~~l~~~l~e~GV~~~p~g-----~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
...+.+.|.++||++++.. +.+|++. .+++++++++++|++.+
T Consensus 287 ------~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~---~~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 287 ------GERTLRFLRERGIQVKDAGQFGLHHHIRISI---GREEDNDRLLAALAEYS 334 (337)
T ss_dssp ------THHHHHHHHHTTEECEEGGGGTCCSEEEEEC---CCHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHCCeEEEECccCCCCCeEEEec---CCHHHHHHHHHHHHHHh
Confidence 2356778889999999853 7899973 37999999999988764
No 165
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.71 E-value=1.3e-16 Score=182.65 Aligned_cols=322 Identities=11% Similarity=0.019 Sum_probs=184.8
Q ss_pred CcHHHHHHHHHHHH-hcccccCC-CC--CC---hHHHHHH-HHHHhhcCCCCCCeEEE-eCChhhHHHHHHHHHHHHHHh
Q 002941 417 LQIELARDMGYTAA-RFGHVMFP-EN--VY---EPALECA-ELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFRKFSF 487 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~-~~~~~~~~-~~--~~---~~~~eLa-e~L~~~~p~~~~~~v~f-~~SGSeAvE~ALklA~r~~~~ 487 (863)
.+|+|++|+.+++. ++.+.... .+ .. +...+++ ++++++++. +.+.+ ++||++|++.|++.+++
T Consensus 57 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~---~~~~v~~~sGs~a~~~a~~~~~~---- 129 (447)
T 3h7f_A 57 VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGA---EFANVQPHSGAQANAAVLHALMS---- 129 (447)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC---SEEECCCSSHHHHHHHHHHHHCC----
T ss_pred CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCC---CceEEEeCCHHHHHHHHHHHhcC----
Confidence 36999999999885 44332100 00 11 2335677 899998874 45666 99999999999987721
Q ss_pred hccccccccCCCccccccccEEEEecCCCccCc-ccc-ceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCc
Q 002941 488 DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT-LGA-MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (863)
Q Consensus 488 ~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t-~ga-ls~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P 565 (863)
.| .+|++...+|++.. .+. +...+. .+ ..+++|
T Consensus 130 -----~G------------d~Vl~~~~~~~~~~~~~~~~~~~g~-~~---------------------------~~~~~~ 164 (447)
T 3h7f_A 130 -----PG------------ERLLGLDLANGGHLTHGMRLNFSGK-LY---------------------------ENGFYG 164 (447)
T ss_dssp -----TT------------CEEEEECGGGTCCGGGTCTTSHHHH-SS---------------------------EEEEEC
T ss_pred -----CC------------CEEEecCcccccccchhhhhhhcCC-ee---------------------------EEEEcC
Confidence 12 57999988887732 221 111110 00 001111
Q ss_pred chhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCceeCCHHHHH
Q 002941 566 EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQR 644 (863)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fL~ 644 (863)
... + +...| .+.+++.+.. .+..+|++ .|. .+.++ +++
T Consensus 165 ~~~----------------~--~~~~d--------~~~l~~~i~~-------~~~~~i~~~~~~-~~~~~-------~l~ 203 (447)
T 3h7f_A 165 VDP----------------A--THLID--------MDAVRATALE-------FRPKVIIAGWSA-YPRVL-------DFA 203 (447)
T ss_dssp CCT----------------T--TCSCC--------HHHHHHHHHH-------HCCSEEEEECSS-CCSCC-------CHH
T ss_pred cCc----------------c--cCCcC--------HHHHHHHHHh-------cCCeEEEEcCCC-CCCcc-------CHH
Confidence 000 0 00011 2445566642 11224555 675 44332 589
Q ss_pred HHHHHHHHcCCeEEEeccc-ccccccCCcchhhhcCCCCcEE--EeccccCCCCCCceeeeccHHHHHhhhcCCccceee
Q 002941 645 ILVKECQNRKIPVIFDEVF-TGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALL 721 (863)
Q Consensus 645 ~Lrelc~~~gilLI~DEV~-TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~ 721 (863)
+|+++|++||++||+||+| +|+...|...... . ..|++ +++|+++ | .+.|++++++++++.+... .
T Consensus 204 ~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~--~-~~di~~~s~sK~l~-G-~~gG~i~~~~~~~~~l~~~------~ 272 (447)
T 3h7f_A 204 AFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV--P-HADVVSTTVHKTLG-G-GRSGLIVGKQQYAKAINSA------V 272 (447)
T ss_dssp HHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST--T-TCSEEEEESSGGGC-C-CSCEEEEECGGGHHHHHHH------H
T ss_pred HHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC--C-CCcEEEecCCcCCC-C-CCeEEEEECHHHHHHHhhh------c
Confidence 9999999999999999997 5665555432211 1 24776 5699996 4 6788889999888877641 1
Q ss_pred cccCCCc-cHHHHHHHHHHHHHhcChh---hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec--ccceEEEEEEccCC
Q 002941 722 HGHSYSA-HALGCAAAAKSIKWFKDPQ---TNHNIIPERRILRELWDLELIQQISSHRTVQRVV--ALGTLCAIELQAAG 795 (863)
Q Consensus 722 ~~~T~~~-~pla~AAalAaL~~l~~~~---l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr--g~Gl~~~iel~~~~ 795 (863)
+.+++++ ++..++++.+++..+.+++ +.+++.++.+++.+.|.+ .+...+.+..+. ..+.++.+++....
T Consensus 273 ~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 348 (447)
T 3h7f_A 273 FPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMA----PDVAKAGVSVVSGGTDVHLVLVDLRDSP 348 (447)
T ss_dssp TTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTS----HHHHHTTCEEGGGSCSSSEEEEECTTSS
T ss_pred CCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHh----ccccCCCeEEecCCCCCCEEEEEcCCCC
Confidence 2233433 3334555555666554433 445555555555554322 211112222222 23456667665321
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEE----ec-------CCEEEEecCCC----CcHHHHHHHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMR----PL-------GNVIYLMCGPC----SSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~----p~-------g~~lr~~ppl~----~t~eeid~~v~~L~~~l~~l 853 (863)
. ....+...|.++||++. |. .+.+|+.+|.. ++++|+++++++|++++++.
T Consensus 349 ----~---~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~~ 414 (447)
T 3h7f_A 349 ----L---DGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALATG 414 (447)
T ss_dssp ----C---CHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHSG
T ss_pred ----C---CHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 0 13445566677899987 32 26788877665 67999999999999998754
No 166
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.71 E-value=3.5e-16 Score=176.34 Aligned_cols=343 Identities=10% Similarity=0.000 Sum_probs=199.9
Q ss_pred eEEeeecccccccCCC-CCcHHHHHHHHH-HHHhcccccCCCC-CChHHHHHHHHHHhhcCCC-----CCCeEEE--eCC
Q 002941 400 QQFDACASWWTQGPDA-TLQIELARDMGY-TAARFGHVMFPEN-VYEPALECAELLLQGVGKG-----WASRAYF--SDN 469 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh-~~~p~V~~Ai~~-q~~~~~~~~~~~~-~~~~~~eLae~L~~~~p~~-----~~~~v~f--~~S 469 (863)
.++|+.+|.....-|+ .-.|.|.+|+.+ +++.... ..+ ......+|.+.+++++... ..++++| +++
T Consensus 30 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~---~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g 106 (412)
T 1yaa_A 30 TKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYN---HEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLS 106 (412)
T ss_dssp SCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCC---CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccc---cCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccc
Confidence 6788888765333332 135889999988 7752111 111 1222345555555544210 0258999 999
Q ss_pred hhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccC
Q 002941 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (863)
Q Consensus 470 GSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~ 549 (863)
|++|++.+++++ +.+. . | .+|++...+||+....+...+. .
T Consensus 107 ~~~a~~~~~~~~-~~~~--~----g------------d~Vl~~~p~~~~~~~~~~~~g~-~------------------- 147 (412)
T 1yaa_A 107 GTGALHISAKFF-SKFF--P----D------------KLVYLSKPTWANHMAIFENQGL-K------------------- 147 (412)
T ss_dssp HHHHHHHHHHHH-HHHC--T----T------------CCEEEEESCCTTHHHHHHTTTC-C-------------------
T ss_pred hHhHHHHHHHHH-HHhC--C----C------------CEEEEeCCCCccHHHHHHHcCc-e-------------------
Confidence 999999998876 3331 1 2 4699999999996543322110 0
Q ss_pred CCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE-Eccc
Q 002941 550 PPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI-IEPV 628 (863)
Q Consensus 550 ~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvI-vEPV 628 (863)
+..++..+.. +...| .+.+++.+.+ ++....+++ ..|
T Consensus 148 ---------~~~v~~~~~~-------------------~~~~d--------~~~l~~~l~~-----~~~~~~~~~~~~p- 185 (412)
T 1yaa_A 148 ---------TATYPYWANE-------------------TKSLD--------LNGFLNAIQK-----APEGSIFVLHSCA- 185 (412)
T ss_dssp ---------EEEEECEETT-------------------TTEEC--------HHHHHHHHHH-----SCTTCEEEEECSS-
T ss_pred ---------EEEEeeecCC-------------------CCccC--------HHHHHHHHHh-----CCCCCEEEEeCCC-
Confidence 0111110000 00011 2455666643 122234444 445
Q ss_pred cccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC---Ccchhhhc-CCCC---c---EEEeccccCC-CCCC
Q 002941 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG---VETTADLL-GCVP---D---IACYGKLLTG-GVIP 697 (863)
Q Consensus 629 iqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG---~~~a~e~~-gv~P---D---ivt~sKgLgg-G~~P 697 (863)
++..|. +.+.+.+++|.++|++||+++|+||++++|+..| .......+ +..+ + +.+++|.++. | ++
T Consensus 186 -~nPtG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-lr 262 (412)
T 1yaa_A 186 -HNPTGL-DPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYG-ER 262 (412)
T ss_dssp -CTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGG-GC
T ss_pred -CCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcC-Cc
Confidence 788885 5578899999999999999999999999986654 22233221 1233 2 3378999987 8 89
Q ss_pred ceeee--c-----cHH----HHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc--C--hhhHHhHHHHHHHHHHH
Q 002941 698 LAATL--A-----TNA----VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK--D--PQTNHNIIPERRILREL 762 (863)
Q Consensus 698 igav~--~-----~~~----i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~--~--~~l~~~l~~~~~~l~~~ 762 (863)
+|+++ + +++ +++.+.. .....+.+.++++++++.++|+... + ++..+++++..+..++.
T Consensus 263 iG~~~~~~~~~~~~~~~~~~l~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (412)
T 1yaa_A 263 VGCFHLALTKQAQNKTIKPAVTSQLAK------IIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHA 336 (412)
T ss_dssp EEEEEEECCSCTTHHHHHHHHHHHHHH------HHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEecCCCCCHHHHHHHHHHHHH------HHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 7 666 7766653 1122233458899999888887431 0 12345555555556665
Q ss_pred HHHHHHHHHhcCCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHH
Q 002941 763 WDLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQ 841 (863)
Q Consensus 763 l~~~l~~~~~~~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~ 841 (863)
+.+.+.+..... .+.-+... |.++.+.+ + ...+...+.++||++.+ .+|+.+. .++++++++
T Consensus 337 l~~~L~~~~~~~-~~~~~~~~~~~~~~~~~---~---------~~~~~~~l~~~gi~v~~---~~Ris~~-~~~~~~i~~ 399 (412)
T 1yaa_A 337 LRDHLVKLGTPG-NWDHIVNQCGMFSFTGL---T---------PQMVKRLEETHAVYLVA---SGRASIA-GLNQGNVEY 399 (412)
T ss_dssp HHHHHHHHTCSS-CCTHHHHCCSSEEECCC---C---------HHHHHHHHHHHCEECCT---TSEEEGG-GCCTTTHHH
T ss_pred HHHHHHhhCCCC-CeeeeccCceEEEeeCC---C---------HHHHHHHHHhCCEEecc---CcEEEEc-cCCHhHHHH
Confidence 554443321000 12112233 34333222 1 23454455578999987 3678765 358999999
Q ss_pred HHHHHHHHHHH
Q 002941 842 LLLKLYQRLEE 852 (863)
Q Consensus 842 ~v~~L~~~l~~ 852 (863)
++++|+++++.
T Consensus 400 ~~~~l~~~~~~ 410 (412)
T 1yaa_A 400 VAKAIDEVVRF 410 (412)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 167
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.71 E-value=7.8e-16 Score=178.30 Aligned_cols=333 Identities=11% Similarity=-0.006 Sum_probs=198.4
Q ss_pred CcHHHHHHHHHHHHhcccccCCCC-CC----hHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHHHHHHHHHHHh-hc
Q 002941 417 LQIELARDMGYTAARFGHVMFPEN-VY----EPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSF-DH 489 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~-~~----~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~ALklA~r~~~~-~~ 489 (863)
+++.+.+++.+++.++.......+ .. +...+++++++++++.+ ..+.++|+++|++|+..|++.++ .++. ..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~-~~~~~~~ 154 (497)
T 3mc6_A 76 GGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAK-MYALHHR 154 (497)
T ss_dssp CCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHH-HHHHHHS
T ss_pred CchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHH-HHHHhcC
Confidence 468999999999988655432122 12 33456777788877642 13579999999999999999994 3422 12
Q ss_pred cccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcc-hh
Q 002941 490 EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WL 568 (863)
Q Consensus 490 G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~-~~ 568 (863)
|.. +.+|++... .|.....++...|.. +..++... .+
T Consensus 155 g~~-------------~~~Vi~~~~-~h~~~~~~~~~~G~~----------------------------~~~v~~~~~~~ 192 (497)
T 3mc6_A 155 GIT-------------EPEIIAPVT-AHAGFDKAAYYFGMK----------------------------LRHVELDPTTY 192 (497)
T ss_dssp CCS-------------SCEEEEETT-SCHHHHHHHHHSCCE----------------------------EEEECBCTTTC
T ss_pred CCC-------------CceEEEeCC-ccHHHHHHHHHcCCe----------------------------EEEEecCcccC
Confidence 211 145655554 455444443332210 11122111 00
Q ss_pred hhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHH
Q 002941 569 YSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVK 648 (863)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lre 648 (863)
.-| .+.+++.+. +++++|+++.. ++..|.+.+ +++|.+
T Consensus 193 ---------------------~~d--------~~~l~~~i~--------~~~~~v~~~~p-~nptG~~~~----l~~i~~ 230 (497)
T 3mc6_A 193 ---------------------QVD--------LGKVKKFIN--------KNTVLLVGSAP-NFPHGIADD----IEGLGK 230 (497)
T ss_dssp ---------------------SBC--------TTTTGGGCC--------SSEEEEEEETT-CTTTCCCCS----CTTTTT
T ss_pred ---------------------cCC--------HHHHHHHHh--------hCCEEEEEECC-CCCCCcCCC----HHHHHH
Confidence 001 012333331 24678888876 888898866 889999
Q ss_pred HHHHcCCeEEEeccccccccc-------CC--cchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHHhhhcCCcc
Q 002941 649 ECQNRKIPVIFDEVFTGFWRL-------GV--ETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDSKL 717 (863)
Q Consensus 649 lc~~~gilLI~DEV~TGfGRt-------G~--~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~~l~~~~~~ 717 (863)
+|++||++||+||+|+|+.+. |. .+.....|+ |++++ .|.+.+| .++|+++++++.+.......
T Consensus 231 la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~--d~~~~s~~K~l~~~-~~~g~~~~~~~~~~~~~~~~-- 305 (497)
T 3mc6_A 231 IAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV--TSISCDTHKYGFAP-KGSSVIMYRNSDLRMHQYYV-- 305 (497)
T ss_dssp HHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTC--CEEEEETTTTTCCC-SSCEEEECSSHHHHTTTSCC--
T ss_pred HHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCC--cEEEECchhhcCCC-CCceeEEecCHHHHhhhhcc--
Confidence 999999999999999877553 21 234444454 77765 4988777 78999999877665432110
Q ss_pred ceeecc-----cCC--CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc-CCCeeEe-cccceEEE
Q 002941 718 KALLHG-----HSY--SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS-HRTVQRV-VALGTLCA 788 (863)
Q Consensus 718 ~~~~~~-----~T~--~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~-~p~v~~v-rg~Gl~~~ 788 (863)
...+.+ .++ +.+....++..++++.+.++++ +++.+....+.+++.+. +.+ .|.+.-+ ...+.++.
T Consensus 306 ~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~-~~~~~~~~~~~~~l~~~----L~~~~~g~~~~~~~~~~~v~ 380 (497)
T 3mc6_A 306 NPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGY-IESCQEIVGAAMKFKKY----IQENIPDLDIMGNPRYSVIS 380 (497)
T ss_dssp BTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH----HHHSCTTCEECSCCCSSEEE
T ss_pred cccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHH----HHhcCCCEEEecCCCeeEEE
Confidence 000111 111 1223334555666666644433 22333333344433323 333 3433222 24556666
Q ss_pred EEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 789 IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 789 iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+..... ...++.+.|.++||+++... +.+|+.++ .+|++++++++++|+++++++.
T Consensus 381 ~~~~~~---------~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~~ 438 (497)
T 3mc6_A 381 FSSKTL---------NIHELSDRLSKKGWHFNALQKPVALHMAFT-RLSAHVVDEICDILRTTVQELK 438 (497)
T ss_dssp EECTTT---------THHHHHHHHHTTTCBCEECCSSCCEEEECC-TTTTCTHHHHHHHHHHHHHHHT
T ss_pred EeCCCC---------CHHHHHHHHHhCCEEEecCCCCCeEEEEEe-CCCHHHHHHHHHHHHHHHHHHH
Confidence 654321 25678999999999988653 56788877 7899999999999999998764
No 168
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.70 E-value=1.8e-16 Score=173.14 Aligned_cols=282 Identities=12% Similarity=0.050 Sum_probs=182.8
Q ss_pred HHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcccccee
Q 002941 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA 526 (863)
Q Consensus 447 eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~ 526 (863)
+|.++|+++++. +.+++++||++|++.+++..++ .| .+|++...+||+.......+
T Consensus 2 ~l~~~la~~~g~---~~~i~~~sG~~a~~~~~~~~~~---------~g------------~~v~~~~~~~~~~~~~~~~~ 57 (331)
T 1pff_A 2 ALEGKIAKLEHA---EACAATASGMGAIAASVWTFLK---------AG------------DHLISDDCLYGCTHALFEHQ 57 (331)
T ss_dssp HHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHCC---------TT------------CEEEEESCCCHHHHHHHHTH
T ss_pred hHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhcC---------CC------------CEEEEcCCCcchHHHHHHHH
Confidence 578889998874 4788888999999999986521 12 57999999998864332211
Q ss_pred cCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHH
Q 002941 527 QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606 (863)
Q Consensus 527 t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~ 606 (863)
... .+ . .+..++. .| .+.+++
T Consensus 58 ~~~---~g-----------~-----------~~~~~~~--------------------------~d--------~~~l~~ 78 (331)
T 1pff_A 58 LRK---FG-----------V-----------EVDFIDM--------------------------AV--------PGNIEK 78 (331)
T ss_dssp HHH---TT-----------C-----------EEEEECT--------------------------TS--------TTHHHH
T ss_pred HHh---cC-----------C-----------EEEEeCC--------------------------CC--------HHHHHH
Confidence 000 00 0 0000110 01 122333
Q ss_pred HHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHH-cCCeEEEecccccccccCCcchhhhcCCCCcEE
Q 002941 607 NLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN-RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA 685 (863)
Q Consensus 607 ~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~-~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv 685 (863)
.+. +++.+|+++++ +++.|.+.+ +++|.++|++ ||+++|+||+|+ .|...... .++ +|++
T Consensus 79 ~i~--------~~~~~v~~~~~-~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~-~~~~~~~~---~~~--~d~~ 139 (331)
T 1pff_A 79 HLK--------PNTRIVYFETP-ANPTLKVID----IEDAVKQARKQKDILVIVDNTFA-SPILTNPL---DLG--VDIV 139 (331)
T ss_dssp TCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTT-HHHHCCGG---GGT--CSEE
T ss_pred hhc--------CCCeEEEEECC-CCCcCcccC----HHHHHHHHhhhcCCEEEEECCCc-ccccCChh---hcC--CcEE
Confidence 332 35788999987 899998876 9999999999 999999999996 33332211 234 5665
Q ss_pred --EeccccCCCCCC-ceeeeccH-HHHHhhhcCCccceeecc-cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHH
Q 002941 686 --CYGKLLTGGVIP-LAATLATN-AVFDSFVGDSKLKALLHG-HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILR 760 (863)
Q Consensus 686 --t~sKgLggG~~P-igav~~~~-~i~~~l~~~~~~~~~~~~-~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~ 760 (863)
+++|.++++..+ +|++++++ ++++.+... .+. .+++.++++++++.++++.+. ...++..++.+.+.
T Consensus 140 ~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~ 211 (331)
T 1pff_A 140 VHSATKYINGHTDVVAGLVCSRADIIAKVKSQG------IKDITGAIISPHDAWLITRGTLTLD--MRVKRAAENAQKVA 211 (331)
T ss_dssp EEETTTTTSSSSSCCCEEEEECHHHHHHHHHTC------CCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred EEECccccCCCCCceEEEEEeCcHHHHHHHHHH------HHhhcCCCCCHHHHHHHHcCcchHH--HHHHHHHHHHHHHH
Confidence 579999864367 78999998 898887652 233 456788999888888887542 12334455555555
Q ss_pred HHHHHHH------HHHHhcCCCee----EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------
Q 002941 761 ELWDLEL------IQQISSHRTVQ----RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------- 822 (863)
Q Consensus 761 ~~l~~~l------~~~~~~~p~v~----~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------- 822 (863)
+.+.+.. .+.+.+.|.+. ..++.|.++.+.+. + ...+.+.|.++||++++.
T Consensus 212 ~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~l~~~gI~~~~~s~g~~~sl 280 (331)
T 1pff_A 212 EFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD-G----------LEKAKKVLDNCHVVSLAVSLGGPESL 280 (331)
T ss_dssp HHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS-S----------HHHHHHHHHTCSSSEECSSCCSSSCE
T ss_pred HHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-C----------HHHHHHHHHhCCCceeccCCCCccee
Confidence 5443210 00011122111 12457889999885 2 345677788999977532
Q ss_pred -----------------------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 823 -----------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 823 -----------------------g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
.+.+|++++...++++++.++++|+++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 281 IQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp EECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred eecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 378999999999999999999988754
No 169
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.70 E-value=6e-16 Score=170.64 Aligned_cols=336 Identities=13% Similarity=-0.004 Sum_probs=194.6
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccc-cCCCC-CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-MFPEN-VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~-~~~~~-~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~A 477 (863)
+|+|.. ..|.++|+.+||.+.+++.+++++++.. ....+ .++...+|.++|+++++. +..+|++||++|++.|
T Consensus 4 ~~~~~~--~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~---~~~i~~~~G~~a~~~a 78 (357)
T 3lws_A 4 RLRTSF--QQTTGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGM---DDAVFFPSGTMAQQVA 78 (357)
T ss_dssp HHHHHH--HTCSEESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHTC---SEEEEESCHHHHHHHH
T ss_pred hhhhHH--HhhcccccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhCC---CcEEEecCcHHHHHHH
Confidence 566622 2356677778999999999988875311 11112 236678999999999884 5667779999999999
Q ss_pred HHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 478 LklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
++.+.+ . | ..++|.....||........... . .
T Consensus 79 l~~~~~-~--------g-----------d~~~vi~~~~~~~~~~~~~~~~~---~------------------------~ 111 (357)
T 3lws_A 79 LRIWSD-E--------T-----------DNRTVAYHPLCHLEIHEQDGLKE---L------------------------H 111 (357)
T ss_dssp HHHHHH-H--------H-----------TCCEEEECTTCHHHHSSTTHHHH---H------------------------S
T ss_pred HHHHhh-c--------C-----------CCcEEEecccceeeeeccchhhh---c------------------------c
Confidence 987732 1 1 12256666667654332110000 0 0
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
+...+++|... ..-| .+. |++. .+ +.+|++++. ++..|..+
T Consensus 112 g~~~~~v~~~~--------------------~~~d--------~~~----l~~~-----~~-~~~v~~~~p-~np~~G~~ 152 (357)
T 3lws_A 112 PIETILVGAAD--------------------RLMT--------LDE----IKAL-----PD-IACLLLELP-QREIGGVA 152 (357)
T ss_dssp SCEEEECSCTT--------------------SCCC--------HHH----HHTC-----CS-CSEEEEESS-BGGGTSBC
T ss_pred CcEEEEecCCC--------------------CCcC--------HHH----HhcC-----cC-cceEEEEcc-cccCCcee
Confidence 01111222100 0011 122 3321 22 567888876 77753367
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccc--cccccCCcchhhhcCCCCcEE--EeccccCCCCCCceeeeccHHHHHhhhc
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFT--GFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVG 713 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~T--GfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~~~i~~~l~~ 713 (863)
++.+.+++|.++|++||++||+||++. .++..|.... .+....|++ +++|+++|. ..|++++++++++.+..
T Consensus 153 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~--~~~~~~d~~~~s~sK~~~~~--~gg~~~~~~~~~~~~~~ 228 (357)
T 3lws_A 153 PAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAA--EIAGLFDSIYISFYKGLGGI--AGAILAGPAAFCQTARI 228 (357)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHH--HHHTTSSEEEEESSSTTCCS--SCEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChH--HHHhcCCEEEEeccccCCCC--ceEEEEcCHHHHHHHHH
Confidence 789999999999999999999999974 0111222111 111124554 889999653 23778889999887753
Q ss_pred CCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE--ecccceEEEEEE
Q 002941 714 DSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR--VVALGTLCAIEL 791 (863)
Q Consensus 714 ~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~--vrg~Gl~~~iel 791 (863)
- +....+.++..++.+ +++.++|+...+ ...+..++.+++ .+.+.+.|.+.- ....+.++.+.+
T Consensus 229 ~---~~~~~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~l--------~~~L~~~~g~~~~~~~~~~~~~~~~~ 294 (357)
T 3lws_A 229 W---KRRYGGDLISLYPYI-VSADYYYELRKD--RMGQYYEQAKQL--------AEQFNALPGVHTTPEVPVSNMFHLHF 294 (357)
T ss_dssp H---HHHTTCCCSCCHHHH-HHHHHHHHHHTT--CHHHHHHHHHHH--------HHHHHTSTTEEEESSSCSSSEEEEEE
T ss_pred H---HHHhcCCcccchHHH-HHHHHHHHHHHH--HHHHHHHHHHHH--------HHHHHhCCCCeeccCCCcceEEEEEe
Confidence 1 011122333345544 445566764321 122223333332 233455665543 235667777877
Q ss_pred ccCCcCCCCchHHHHHHHHHHHHCCcEEEecC------CEEEEecC---CCCcHHHHHHHHHHHHHHH
Q 002941 792 QAAGCNAGYGSLYAASLLKKLREDGVYMRPLG------NVIYLMCG---PCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 792 ~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g------~~lr~~pp---l~~t~eeid~~v~~L~~~l 850 (863)
.... ......+.+.|.++||++++.. ..+|+... ...+++++++++++|.+++
T Consensus 295 ~~~~------~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 295 DGQA------ADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp ESCH------HHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred cCCh------HHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 6431 0124678889999999998642 25666543 2368899999999988764
No 170
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.70 E-value=1.2e-15 Score=171.44 Aligned_cols=262 Identities=11% Similarity=0.001 Sum_probs=165.2
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|.++|+++.+. +.+++++||++|++.+++.+++ .| .+||+...+|||
T Consensus 55 ~~~~~~~~~l~~~la~~~g~---~~~i~~~sG~~ai~~~~~~~~~---------~g------------d~vl~~~~~y~~ 110 (389)
T 3acz_A 55 RLGNPTVEQFEEMVCSIEGA---AGSAAFGSGMGAISSSTLAFLQ---------KG------------DHLIAGDTLYGC 110 (389)
T ss_dssp TTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHTTTCC---------TT------------CEEEEESSCCHH
T ss_pred CCCChHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHHhC---------CC------------CEEEEeCCCchH
Confidence 45678899999999999874 5788899999999999986521 12 579999999998
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.......... .. |.....+|. .|
T Consensus 111 ~~~~~~~~~~--------------~~-------------g~~~~~v~~------------------------~d------ 133 (389)
T 3acz_A 111 TVSLFTHWLP--------------RF-------------GIEVDLIDT------------------------SD------ 133 (389)
T ss_dssp HHHHHHHHHH--------------HT-------------TCEEEEECT------------------------TC------
T ss_pred HHHHHHHHHH--------------Hc-------------CCEEEEECC------------------------CC------
Confidence 5332211000 00 000001110 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.++ +++.+|++|++ ++..|.+.+ +++|.++|++||+++|+||+++++ ..+.. +
T Consensus 134 --~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~~~~~~~~~livD~~~~~~-~~~~~-----~ 192 (389)
T 3acz_A 134 --VEKVKAAWK--------PNTKMVYLESP-ANPTCKVSD----IKGIAVVCHERGARLVVDATFTSP-CFLKP-----L 192 (389)
T ss_dssp --HHHHHHTCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT-TTCCG-----G
T ss_pred --HHHHHHhcC--------CCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCccc-cccCc-----c
Confidence 133444442 35789999997 899998876 899999999999999999999754 22222 2
Q ss_pred CCCCcEE--EeccccCCCCCCc-eeeeccH-HHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 679 GCVPDIA--CYGKLLTGGVIPL-AATLATN-AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 679 gv~PDiv--t~sKgLggG~~Pi-gav~~~~-~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
+..+|++ +++|.++|+..++ |++++++ ++++.+... ...++...+|..++++++.|+.+. ...++..+
T Consensus 193 ~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~------~~~~g~~~~~~~~~~~~~~l~~l~--~r~~~~~~ 264 (389)
T 3acz_A 193 ELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFY------RKDAGSLMAPMDAFLCARGMKTLP--IRMQIHME 264 (389)
T ss_dssp GTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHH------HHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHH
T ss_pred ccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHH------HHhcCCCCCHHHHHHHHcCccHHH--HHHHHHHH
Confidence 3468988 6789998765787 9999998 888877531 111334468888888888887542 22344445
Q ss_pred HHHHHHHHHHHHH------HHHHhcCCCee----EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe
Q 002941 755 ERRILRELWDLEL------IQQISSHRTVQ----RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP 821 (863)
Q Consensus 755 ~~~~l~~~l~~~l------~~~~~~~p~v~----~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p 821 (863)
+...+.+.+.+.- ...+.++|.+. ..+|.|.++.+++.. ...+.+.+.+.|+++++
T Consensus 265 ~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~-----------~~~~~~~l~~~~i~~~~ 330 (389)
T 3acz_A 265 NGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS-----------FEAAKKLMEHLKVCTLA 330 (389)
T ss_dssp HHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-----------HHHHHHHHTTCSSSEEB
T ss_pred HHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC-----------HHHHHHHHHhCCCcEEC
Confidence 5555554332210 00011112110 114678899999853 12344556677887765
No 171
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.70 E-value=2.3e-16 Score=179.46 Aligned_cols=289 Identities=11% Similarity=0.005 Sum_probs=181.7
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
+.++...+|+++|+++.+. +..++++||++|++.|++.+++ .| .+||+...+||+.
T Consensus 55 ~~~~~~~~l~~~la~~~g~---~~~v~~~sGt~A~~~~l~~~~~---------~g------------d~vi~~~~~~~~~ 110 (421)
T 2ctz_A 55 IMNPTVDVLEKRLAALEGG---KAALATASGHAAQFLALTTLAQ---------AG------------DNIVSTPNLYGGT 110 (421)
T ss_dssp TBCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHCC---------TT------------CEEEECSCCCHHH
T ss_pred CCChHHHHHHHHHHHHhCC---CceEEecCHHHHHHHHHHHHhC---------CC------------CEEEEeCCCchHH
Confidence 4678889999999999984 4678888999999999987621 12 5799999999997
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecC-cchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
......+... . |+....+ |. +|
T Consensus 111 ~~~~~~~~~~---~------------------------g~~~~~~~~~------------------------~d------ 133 (421)
T 2ctz_A 111 FNQFKVTLKR---L------------------------GIEVRFTSRE------------------------ER------ 133 (421)
T ss_dssp HHHHHTHHHH---T------------------------TCEEEECCTT------------------------CC------
T ss_pred HHHHHHHHHH---c------------------------CCEEEEECCC------------------------CC------
Confidence 5543211100 0 0000111 10 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. +++.+|++|++ ++..|.+.+ +++|.++|++||++||+||+|+++|..+..+
T Consensus 134 --~~~l~~~i~--------~~~~~v~~~~~-~n~~G~~~~----l~~i~~~a~~~g~~livD~~~~~~g~~~~~~----- 193 (421)
T 2ctz_A 134 --PEEFLALTD--------EKTRAWWVESI-GNPALNIPD----LEALAQAAREKGVALIVDNTFGMGGYLLRPL----- 193 (421)
T ss_dssp --HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGGGGTSCCGG-----
T ss_pred --HHHHHHhhc--------cCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCcccccccCCcc-----
Confidence 234555553 36789999997 999998776 9999999999999999999998788766543
Q ss_pred CCCCcEE--EeccccCCCCCCceeeecc---HHH----HHhhhcCCc-cce-------------------eecccCCCcc
Q 002941 679 GCVPDIA--CYGKLLTGGVIPLAATLAT---NAV----FDSFVGDSK-LKA-------------------LLHGHSYSAH 729 (863)
Q Consensus 679 gv~PDiv--t~sKgLggG~~Pigav~~~---~~i----~~~l~~~~~-~~~-------------------~~~~~T~~~~ 729 (863)
+..+|++ +++|++++...++|++++. .++ ++.+..... ... .........+
T Consensus 194 ~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~ 273 (421)
T 2ctz_A 194 AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALG 273 (421)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCC
T ss_pred ccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCC
Confidence 2358998 6789999743788888774 122 222221000 000 0111234678
Q ss_pred HHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-------------------cccceEEEEE
Q 002941 730 ALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-------------------VALGTLCAIE 790 (863)
Q Consensus 730 pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-------------------rg~Gl~~~ie 790 (863)
|+.++++++.|+.+.. ..++..++.+++ .+.+.++|.|..+ +|.|.+++++
T Consensus 274 ~~~a~~~~~~l~~l~~--r~~~~~~~a~~l--------~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~ 343 (421)
T 2ctz_A 274 PFEAWVVLLGMETLSL--RAERHVENTLHL--------AHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFG 343 (421)
T ss_dssp HHHHHHHHHHHTTHHH--HHHHHHHHHHHH--------HHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEE
T ss_pred HHHHHHHHcCcchHHH--HHHHHHHhHHHH--------HHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEE
Confidence 9999988888876531 122333333333 3345567776655 5889999999
Q ss_pred EccCCcCCCCchHHHHHHHHHHHHCCcEEEec----------------------------CCEEEEecCCCCcHHHHHHH
Q 002941 791 LQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----------------------------GNVIYLMCGPCSSPEVCSQL 842 (863)
Q Consensus 791 l~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~----------------------------g~~lr~~ppl~~t~eeid~~ 842 (863)
+.... .....+...+...|+.++.+ .+.+|++. +.|++|.+
T Consensus 344 l~~~~-------~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~----g~e~~~~l 412 (421)
T 2ctz_A 344 LKGGY-------EAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSV----GLEHVEDL 412 (421)
T ss_dssp ETTHH-------HHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEEC----CSSCHHHH
T ss_pred eCCCH-------HHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEe----CCCCHHHH
Confidence 97421 12444555443333222111 25777763 34678888
Q ss_pred HHHHHHHH
Q 002941 843 LLKLYQRL 850 (863)
Q Consensus 843 v~~L~~~l 850 (863)
++.|++++
T Consensus 413 i~~l~~al 420 (421)
T 2ctz_A 413 KAELKEAL 420 (421)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88887765
No 172
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.69 E-value=2.3e-15 Score=170.56 Aligned_cols=363 Identities=11% Similarity=0.068 Sum_probs=196.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCC-----ChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-----YEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~-----~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAv 474 (863)
.|||..+. ++ .+|+|.+|+.+++..........+. .+...++.++|+++++.+ .+.++|+++|++|+
T Consensus 20 ~~Ld~~~~------~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~ 91 (432)
T 3a9z_A 20 VYMDYNAT------TP-LEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGK-PQDIIFTSGGTESN 91 (432)
T ss_dssp EECBTTTC------CC-CCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESCHHHHH
T ss_pred EEeeCCcc------CC-CCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCC-cCeEEEeCChHHHH
Confidence 78886542 13 6899999999998763211111111 123568999999988743 36899999999999
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccc
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (863)
+.+++.+.+.|...... .| .+||+...+||+... +-++... +... ..+|.. +.....
T Consensus 92 ~~~~~~~~~~~~~~~~~-~g------------d~vl~~~p~y~~~~~--i~~~~~~-h~s~-~~~~~~----~~~~~g-- 148 (432)
T 3a9z_A 92 NLVIHSTVRCFHEQQTL-QG------------RTVDQISPEEGTRPH--FITCTVE-HDSI-RLPLEH----LVEDQV-- 148 (432)
T ss_dssp HHHHHHHHHHHHHHHHH-C------------------------CCCE--EEEETTC-CHHH-HHHHHH----HHHTTS--
T ss_pred HHHHHHHHhhhhhcccc-CC------------ccccccccccccCCe--EEEecCc-chhH-HHHHHH----HHHhcC--
Confidence 99999884333211000 12 569999999998621 1111100 0000 000000 000000
Q ss_pred ccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 002941 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (863)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG 634 (863)
..+..++.... +...| .+.+++.+. .++.+|+++++ ++..|
T Consensus 149 --~~v~~v~~~~~--------------------~~~~d--------~~~l~~~i~--------~~~~~v~~~~~-~nptG 189 (432)
T 3a9z_A 149 --AEVTFVPVSKV--------------------NGQVE--------VEDILAAVR--------PTTCLVTIMLA-NNETG 189 (432)
T ss_dssp --CEEEEECCCTT--------------------TSSCC--------HHHHHHTCC--------TTEEEEECCSB-CTTTC
T ss_pred --cEEEEEecCcc--------------------cCCcC--------HHHHHHhcc--------CCceEEEEECc-ccCcc
Confidence 00111221100 00011 234444432 35778899997 89999
Q ss_pred ceeCCHHHHHHHHHHHHHcC----------CeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeee
Q 002941 635 MHMVDPLFQRILVKECQNRK----------IPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATL 702 (863)
Q Consensus 635 ~~~pp~~fL~~Lrelc~~~g----------ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~ 702 (863)
.+.+ +++|.++|++|| +++|+||+| ++|+.. ..... ..+|++++ +|.+ | .++|+++
T Consensus 190 ~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~-~~~~~~--~~~~~--~~~d~~~~s~~K~~--g-~~~G~~~ 257 (432)
T 3a9z_A 190 VIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQ-ALGKRR--VDVED--LGVDFLTIVGHKFY--G-PRIGALY 257 (432)
T ss_dssp BBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTT-TTTTSC--CCHHH--HCCSEEEEEGGGTT--C-CSCEEEE
T ss_pred cccC----HHHHHHHHHhcCcccccccCCceEEEEEchh-hhCCcc--cChhh--cCCCEEEEehhHhc--C-CcceEEE
Confidence 8887 788999999999 999999999 666542 22222 24788765 8976 3 4599999
Q ss_pred ccHHH-HHhhhcCC-ccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe--e
Q 002941 703 ATNAV-FDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV--Q 778 (863)
Q Consensus 703 ~~~~i-~~~l~~~~-~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v--~ 778 (863)
+++++ ...+.... .........+++.++.+++++.++|+.+++ ..+++.+..+.+++.+.+.+.+... .... .
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~ 334 (432)
T 3a9z_A 258 VRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSE--NCETYEAHMRDIRDYLEERLEAEFG-KRIHLNS 334 (432)
T ss_dssp ETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHG-GGEEESS
T ss_pred EccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHhccC-CcEEEeC
Confidence 98765 22222100 000001123356788999999999997753 2445555555566655555444211 1100 1
Q ss_pred ---EecccceEEEEEEccCCcCCCCchHHHHHHHHHHH----HCCcEEEe-------------------cCCEEEEecCC
Q 002941 779 ---RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR----EDGVYMRP-------------------LGNVIYLMCGP 832 (863)
Q Consensus 779 ---~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~----e~GV~~~p-------------------~g~~lr~~ppl 832 (863)
..+..|.++.+.+.+.. .. ...+...+. +.|+.+.+ .++.+|+.++.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~ 407 (432)
T 3a9z_A 335 RFPGVERLPNTCNFSIQGSQ----LR---GYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGR 407 (432)
T ss_dssp CCTTCCBCTTEEEEEECSTT----CC---HHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCT
T ss_pred CCCcccCCCCEEEEEeCCCC----Cc---HHHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCC
Confidence 11345667777776421 00 122333221 12222211 23789999888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHH
Q 002941 833 CSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 833 ~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.+|++|+++++++|+++++++.
T Consensus 408 ~~t~eei~~~~~~l~~~~~~~~ 429 (432)
T 3a9z_A 408 STTRAEVDLIVQDLKQAVNQLE 429 (432)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhc
Confidence 8899999999999999887654
No 173
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.69 E-value=3e-16 Score=175.43 Aligned_cols=342 Identities=11% Similarity=-0.030 Sum_probs=185.1
Q ss_pred EEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCC-----CCCChHHHHHHHHHHhhcCCCCCCe
Q 002941 389 VYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP-----ENVYEPALECAELLLQGVGKGWASR 463 (863)
Q Consensus 389 v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~-----~~~~~~~~eLae~L~~~~p~~~~~~ 463 (863)
.++.++. -|||+.+. +. .+|++.+|+.+++.+....... ....+...++.++|+++++.+ .+.
T Consensus 15 ~~~~~~~----iyld~~~~------~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~ 82 (400)
T 3vax_A 15 VPRGSHM----TYLDAAAT------TR-VDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAE-PDE 82 (400)
T ss_dssp -----------CCCCCCCC------SS-SCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCC-GGG
T ss_pred CcccCCc----EEecCCCC------CC-CCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCC-CCc
Confidence 3444545 78887652 23 5799999999998764211000 012344678999999988753 358
Q ss_pred EEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCcccccccc-EEEEecCCCccCccccceecCCCCCCCCCcCCccc
Q 002941 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL-KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYS 542 (863)
Q Consensus 464 v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~-~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~ 542 (863)
++|+++|++|++.+++.+. .+.... | . .||+....|++.......+.. . +.
T Consensus 83 v~~~~g~t~al~~~~~~l~-~~~~~~----g------------d~~Vl~~~~~~~~~~~~~~~~~~-~---g~------- 134 (400)
T 3vax_A 83 LIFTSGATESNNIALLGLA-PYGERT----G------------RRHIITSAIEHKAVLEPLEHLAG-R---GF------- 134 (400)
T ss_dssp EEEESCHHHHHHHHHHTTH-HHHHHH----T------------CCEEEEETTSCHHHHHHHHHHHT-T---TC-------
T ss_pred EEEeCCHHHHHHHHHHHHH-HhhccC----C------------CCEEEECccccHhHHHHHHHHHh-c---CC-------
Confidence 9999999999999999874 232111 1 4 688877777664332222210 0 00
Q ss_pred CCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 002941 543 GRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622 (863)
Q Consensus 543 ~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAA 622 (863)
.+..++....+ .-| .+.+++.+. +++.+
T Consensus 135 ---------------~~~~v~~~~~~---------------------~~d--------~~~l~~~i~--------~~~~~ 162 (400)
T 3vax_A 135 ---------------EVDFLTPGPSG---------------------RIS--------VEGVMERLR--------PDTLL 162 (400)
T ss_dssp ---------------EEEEECCCTTC---------------------CCC--------HHHHHTTCC--------TTEEE
T ss_pred ---------------eEEEEccCCCC---------------------CcC--------HHHHHHhcC--------CCceE
Confidence 00111111000 011 133443332 35788
Q ss_pred EEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCcee
Q 002941 623 LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAA 700 (863)
Q Consensus 623 vIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Piga 700 (863)
|+++++ ++..|.+.+ +++|.++|++||+++|+||+++ +|... ....+. +|++++| | +.|+ .++|+
T Consensus 163 v~~~~~-~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~----~~~~~~-~d~~~~s~~K-~~g~-~g~g~ 229 (400)
T 3vax_A 163 VSLMHV-NNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKVP----GDLTTP-IDMISISGHK-IGAP-KGVGA 229 (400)
T ss_dssp EECCSB-CTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTSG----GGGGSC-CSEEEEETGG-GTSC-SSCEE
T ss_pred EEEECC-CCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCCC----cChhhc-CcEEEEeHHH-hCCC-CceEE
Confidence 999997 999998876 7999999999999999999995 43321 122234 8998765 9 5444 46888
Q ss_pred ee-ccHH-HH---HhhhcCCccceee-cccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 701 TL-ATNA-VF---DSFVGDSKLKALL-HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 701 v~-~~~~-i~---~~l~~~~~~~~~~-~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
++ ++++ +. ..+...-...... ...+.+.++.+++++.++++.+++ ..+++.+..+.+++.+.+. +. .
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~~l~~~----L~-~ 302 (400)
T 3vax_A 230 LVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEA--EHAQWQVAAQDLRSRLLAG----LA-S 302 (400)
T ss_dssp EEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHH----HT-T
T ss_pred EEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHh----hC-C
Confidence 88 7762 11 1111100000000 112344578888888888887643 2345555555555554433 33 3
Q ss_pred CCeeEec----ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec------------------------CCEE
Q 002941 775 RTVQRVV----ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVI 826 (863)
Q Consensus 775 p~v~~vr----g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~------------------------g~~l 826 (863)
+.+.-+. ..+.++.+.+.... ...+.+.|. +||.+++. .+.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~i 372 (400)
T 3vax_A 303 TSFQVNGDQDHVVPHILNLSFEDVD---------AEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSL 372 (400)
T ss_dssp TTCEECSCTTSBCTTEEEEECTTCC---------HHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEE
T ss_pred CCEEEeCCcccCCCCEEEEEeCCCC---------HHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceE
Confidence 3332221 12457777665322 456788888 88877652 3889
Q ss_pred EEec-CCCCcHHHHHHHHHHHHHHHHH
Q 002941 827 YLMC-GPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 827 r~~p-pl~~t~eeid~~v~~L~~~l~~ 852 (863)
|+.+ +..++++++++++++|++++++
T Consensus 373 Rls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 373 RFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp EEEEEEC--------------------
T ss_pred EEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 9998 8889999999999999887753
No 174
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.68 E-value=2.1e-15 Score=169.52 Aligned_cols=322 Identities=11% Similarity=-0.026 Sum_probs=177.7
Q ss_pred CcHHHHHHHHHHHH-hcccccC--CC-CCChHHH----HHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhh
Q 002941 417 LQIELARDMGYTAA-RFGHVMF--PE-NVYEPAL----ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~-~~~~~~~--~~-~~~~~~~----eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~ 488 (863)
.+|+|++|+.+++. .+..... .. ..++... .+.+++++.++.+ .+. ++++||++|++.+++.+++
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~-i~~~sGt~a~~~~~~~~~~----- 109 (417)
T 3n0l_A 37 TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCK-FAN-VQPNSGSQANQGVYAALIN----- 109 (417)
T ss_dssp CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS-EEE-CCCSSHHHHHHHHHHHHSC-----
T ss_pred CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCC-Ccc-eEeccHHHHHHHHHHHhcC-----
Confidence 36999999999884 4322110 00 1122222 3445778887742 122 5668899999999987721
Q ss_pred ccccccccCCCccccccccEEEEecCCCccCcccc--ceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcc
Q 002941 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA--MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (863)
Q Consensus 489 ~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~ga--ls~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ 566 (863)
.| .+|++...+||+..... +...+. +...+++|.
T Consensus 110 ----~g------------d~vl~~~~~~~~~~~~~~~~~~~g~----------------------------~~~~~~~~~ 145 (417)
T 3n0l_A 110 ----PG------------DKILGMDLSHGGHLTHGAKVSSSGK----------------------------MYESCFYGV 145 (417)
T ss_dssp ----TT------------CEEEEECC----------------C----------------------------CSEEEEECC
T ss_pred ----CC------------CEEEecccccccccchhhhhhhhcc----------------------------eeeeEeccC
Confidence 12 57999999987743211 111110 000011110
Q ss_pred hhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHH
Q 002941 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646 (863)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~L 646 (863)
.. +...| .+.+++.+.+ .++.+|++.+. ..|...+ +++|
T Consensus 146 ~~-------------------~~~~d--------~~~l~~~i~~-------~~~~~v~~~~~---~~G~~~~----l~~i 184 (417)
T 3n0l_A 146 EL-------------------DGRID--------YEKVREIAKK-------EKPKLIVCGAS---AYARVID----FAKF 184 (417)
T ss_dssp CT-------------------TSSCC--------HHHHHHHHHH-------HCCSEEEECCS---SCCSCCC----HHHH
T ss_pred CC-------------------CCCcC--------HHHHHHHHHh-------cCCeEEEECCc---ccCccCC----HHHH
Confidence 00 00011 2456666642 13345565432 2466555 9999
Q ss_pred HHHHHHcCCeEEEecccc-cccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeecc-HHHHHhhhcCCccceeec
Q 002941 647 VKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLAT-NAVFDSFVGDSKLKALLH 722 (863)
Q Consensus 647 relc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~-~~i~~~l~~~~~~~~~~~ 722 (863)
+++|++||++||+||+|+ |+...|..... +. ..|++++| |+++| .++|+++++ +++++.+... ..+
T Consensus 185 ~~l~~~~~~~li~Dea~~~g~~~~~~~~~~--~~-~~di~~~s~sK~l~g--~~~G~~~~~~~~~~~~~~~~-----~~~ 254 (417)
T 3n0l_A 185 REIADEIGAYLFADIAHIAGLVVAGEHPSP--FP-YAHVVSSTTHKTLRG--PRGGIIMTNDEELAKKINSA-----IFP 254 (417)
T ss_dssp HHHHHHHTCEEEEECTTTHHHHHTTSSCCC--TT-TCSEEEEESSTTTCS--CSCEEEEESCHHHHHHHHHH-----HTT
T ss_pred HHHHHHcCCEEEEECccchhhhhcccCCCc--cc-cceEEEeeCccccCC--CCeeEEEECCHHHHHHHhhh-----hCC
Confidence 999999999999999973 33222221100 00 35888776 99965 357888888 7888877531 123
Q ss_pred ccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec--ccceEEEEEEccCCcCCCC
Q 002941 723 GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV--ALGTLCAIELQAAGCNAGY 800 (863)
Q Consensus 723 ~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr--g~Gl~~~iel~~~~~~~~~ 800 (863)
+.+.+.++..++++.+++..+.++++ +...+....+.+.+.+.+.+ .+ +.-+. ..+.++.+.+....
T Consensus 255 ~~~~~~~~~~~aa~~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~~~~~~~~~~~~~~~~----- 323 (417)
T 3n0l_A 255 GIQGGPLMHVIAAKAVGFKFNLSDEW-KVYAKQVRTNAQVLANVLMD----RK-FKLVSDGTDNHLVLMSFLDRE----- 323 (417)
T ss_dssp TTCSSCCHHHHHHHHHHHHHHTSHHH-HHHHHHHHHHHHHHHHHHHH----TT-CEEGGGSCSSSEEEEECTTSS-----
T ss_pred cccCCcHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHh----CC-ceeccCCCCceEEEEEcccCC-----
Confidence 34445577777777777776433332 23333333333433333322 22 11111 23456667665321
Q ss_pred chHHHHHHHHHHHHCCcEEEec-----------CCEEEEecCCC----CcHHHHHHHHHHHHHHHHHH
Q 002941 801 GSLYAASLLKKLREDGVYMRPL-----------GNVIYLMCGPC----SSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 801 ~~~~~~~l~~~l~e~GV~~~p~-----------g~~lr~~ppl~----~t~eeid~~v~~L~~~l~~l 853 (863)
.....+.+.|.++||++++. .+.+|+.++.. ++++++++++++|.+++++.
T Consensus 324 --~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 389 (417)
T 3n0l_A 324 --FSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDV 389 (417)
T ss_dssp --SCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred --CCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 01456777888999999842 25688875533 57899999999999999653
No 175
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.68 E-value=1.5e-16 Score=178.00 Aligned_cols=311 Identities=13% Similarity=0.055 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCC
Q 002941 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (863)
Q Consensus 419 p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~ 498 (863)
+++.+++.+++....+. ...+...+|.++|+++++. ++++|++||++|++.|++.+ + . + .|
T Consensus 36 ~~~~~a~~~~~~~~~~~----~~~~~~~~l~~~la~~~~~---~~~i~~~~gt~al~~~l~~~-~-~----~--~g---- 96 (391)
T 3dr4_A 36 GNERDYVLECMDTTWIS----SVGRFIVEFEKAFADYCGV---KHAIACNNGTTALHLALVAM-G-I----G--PG---- 96 (391)
T ss_dssp SSHHHHHHHHHHHTCCS----SCSHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHH-T-C----C--TT----
T ss_pred HHHHHHHHHHHHcCCcc----CCChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHc-C-C----C--Cc----
Confidence 56777777776653221 2467889999999999984 58999999999999999877 1 0 0 12
Q ss_pred CccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCc-chhhhhhccccc
Q 002941 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHKD 577 (863)
Q Consensus 499 ~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~~~~~~~~ 577 (863)
.+|++...+||+....+...+.. +..++.. ..+
T Consensus 97 --------d~vl~~~~~~~~~~~~~~~~g~~-----------------------------~~~~~~~~~~~--------- 130 (391)
T 3dr4_A 97 --------DEVIVPSLTYIASANSVTYCGAT-----------------------------PVLVDNDPRTF--------- 130 (391)
T ss_dssp --------CEEEEESSSCTHHHHHHHHTTCE-----------------------------EEEECBCTTTC---------
T ss_pred --------CEEEECCCchHHHHHHHHHCCCE-----------------------------EEEEecCcccc---------
Confidence 57999999999875443322110 0001110 000
Q ss_pred cccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeE
Q 002941 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (863)
Q Consensus 578 ~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilL 657 (863)
.-| .+.+++.+ .+++.+|++.. ..|...+ +++|.++|++||++|
T Consensus 131 ------------~~d--------~~~l~~~~--------~~~~~~v~~~n----~tG~~~~----~~~i~~l~~~~~~~l 174 (391)
T 3dr4_A 131 ------------NLD--------AAKLEALI--------TPRTKAIMPVH----LYGQICD----MDPILEVARRHNLLV 174 (391)
T ss_dssp ------------SBC--------GGGSGGGC--------CTTEEEECCBC----GGGCCCC----HHHHHHHHHHTTCEE
T ss_pred ------------CcC--------HHHHHHhc--------CCCceEEEEEC----CCCChhh----HHHHHHHHHHcCCEE
Confidence 001 01122222 13566666433 3455544 899999999999999
Q ss_pred EEecccccccccCCcchhhhcCCCCcEEEec----cccCCCCCCceeeecc-HHHHHhhhc---CCc-----cceeeccc
Q 002941 658 IFDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFVG---DSK-----LKALLHGH 724 (863)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PDivt~s----KgLggG~~Pigav~~~-~~i~~~l~~---~~~-----~~~~~~~~ 724 (863)
|+||+|+ +| ..+.-...+..+|++++| |++++| ..|+++++ +++++.+.. .+. ......+.
T Consensus 175 i~D~a~~-~g---~~~~~~~~~~~~di~~~S~s~~K~l~~g--~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ 248 (391)
T 3dr4_A 175 IEDAAEA-VG---ATYRGKKSGSLGDCATFSFFGNAIITTG--EGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGF 248 (391)
T ss_dssp EEECTTC-TT---CEETTEETTSSSSEEEEECBTTSSSCCB--SCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCC
T ss_pred EEECccc-cc---ceECCeeecccCCEEEEECCCCCcCCcC--CeEEEEECCHHHHHHHHHHHhcCCCCCCccccccccc
Confidence 9999995 32 222222345557998888 999876 36777665 556655432 110 00011234
Q ss_pred CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE-----ecccceEEEEEEccCCcCCC
Q 002941 725 SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR-----VVALGTLCAIELQAAGCNAG 799 (863)
Q Consensus 725 T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~-----vrg~Gl~~~iel~~~~~~~~ 799 (863)
.+..+++.+|++++.++.++ ++.++..++.+++.+ .+.+. ....... ....+.++.+.+.... .
T Consensus 249 ~~~~~~l~aa~~~~~~~~~~--~~~~~~~~~~~~l~~----~L~~~--g~~~~~~~~~~~~~~~~~~~~i~~~~~~---~ 317 (391)
T 3dr4_A 249 NYRMTNIQAAIGLAQLERVD--EHLAARERVVGWYEQ----KLARL--GNRVTKPHVALTGRHVFWMYTVRLGEGL---S 317 (391)
T ss_dssp BCBCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHH----HHGGG--TTSEECCCCCTTSCCCCSSEEEEECSSC---S
T ss_pred ccCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH----HhhcC--CccccCcCCCCCCcceeEEEEEEECCcc---c
Confidence 46778888888887776553 233444444444443 32222 1211111 1233445666665410 0
Q ss_pred CchHHHHHHHHHHHHCCcEEEec-------------------------CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 800 YGSLYAASLLKKLREDGVYMRPL-------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 800 ~~~~~~~~l~~~l~e~GV~~~p~-------------------------g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.....+.+.|.++||.+++. ...+++.+...+|+||||+++++|++++
T Consensus 318 ---~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 318 ---TTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp ---SCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred ---hhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 02567899999999999864 2578888788899999999999997653
No 176
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.68 E-value=8.1e-15 Score=160.76 Aligned_cols=331 Identities=14% Similarity=0.081 Sum_probs=196.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
+++|+.++... . -.|++.+++.+.... ... .+..+...+|.++|+++++ .+.+++++||++|+..+++
T Consensus 4 ~~i~~~~~~~~---~--p~~~~~~a~~~~~~~--~~~--y~~~~~~~~l~~~la~~~g---~~~~~~~~~gt~a~~~~~~ 71 (347)
T 1jg8_A 4 MMIDLRSDTVT---K--PTEEMRKAMAQAEVG--DDV--YGEDPTINELERLAAETFG---KEAALFVPSGTMGNQVSIM 71 (347)
T ss_dssp -CEECSCGGGC---C--CCHHHHHHHHTCCCC--CGG--GTCCHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHH
T ss_pred eEEEeccccCC---C--CCHHHHHHHhcCCCC--Ccc--cCCChHHHHHHHHHHHHhC---CceEEEecCcHHHHHHHHH
Confidence 56787764332 2 358888887654211 111 1235567799999999987 3678999999999999887
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcccc---ceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA---MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~ga---ls~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
...+ .| .+|++...+ |+.+... ....|..
T Consensus 72 ~~~~---------~g------------d~Vl~~~~~-~~~~~~~~~~~~~~g~~-------------------------- 103 (347)
T 1jg8_A 72 AHTQ---------RG------------DEVILEADS-HIFWYEVGAMAVLSGVM-------------------------- 103 (347)
T ss_dssp HHCC---------TT------------CEEEEETTC-HHHHSSTTHHHHHTCCE--------------------------
T ss_pred HhcC---------CC------------CEEEEcCcc-hhhhccccchhhccCeE--------------------------
Confidence 6520 12 457776655 4433221 1111100
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC-Cc
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG-GM 635 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g-G~ 635 (863)
+..+ .+..+ .-| .+.+++.+.+. ..+..++.+|++++. +++. |
T Consensus 104 --~~~v-~~~~~---------------------~~d--------~~~l~~~i~~~--~~~~~~~~~v~~~~~-~npt~G- 147 (347)
T 1jg8_A 104 --PHPV-PGKNG---------------------AMD--------PDDVRKAIRPR--NIHFPRTSLIAIENT-HNRSGG- 147 (347)
T ss_dssp --EEEE-CEETT---------------------EEC--------HHHHHHHSCCS--CTTSCCEEEEEEESS-BTTTTS-
T ss_pred --EEEe-cCCCC---------------------ccC--------HHHHHHHhccc--cccccCceEEEEecc-ccccCC-
Confidence 0001 00000 001 24455555310 001125788889987 8887 6
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccccccc---cCCcchhhhcCCCCcE--EEeccccCCCCCCcee-eeccHHHHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR---LGVETTADLLGCVPDI--ACYGKLLTGGVIPLAA-TLATNAVFD 709 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGR---tG~~~a~e~~gv~PDi--vt~sKgLggG~~Piga-v~~~~~i~~ 709 (863)
.+.|.+.+++|.++|++||+++|+||+|. +|- .|.. ...+....|. ++++|++++ |+|+ +++++++++
T Consensus 148 ~~~~~~~l~~i~~~a~~~~~~li~D~a~~-~~~~~~~~~~--~~~~~~~~d~~~~s~sK~l~~---~~G~~~~~~~~~~~ 221 (347)
T 1jg8_A 148 RVVPLENIKEICTIAKEHGINVHIDGARI-FNASIASGVP--VKEYAGYADSVMFCLSKGLCA---PVGSVVVGDRDFIE 221 (347)
T ss_dssp BCCCHHHHHHHHHHHHHHTCEEEEEETTH-HHHHHHHCCC--HHHHHHTCSEEEEESSSTTCC---SSCEEEEECHHHHH
T ss_pred ccCcHHHHHHHHHHHHHCCCEEEeehhhh-hcchhhcCCC--hHHhcccccEEEEecccccCC---CceEEEEcCHHHHH
Confidence 55678889999999999999999999873 321 1211 1111112354 468999974 4774 567888877
Q ss_pred hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEE
Q 002941 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAI 789 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~i 789 (863)
.+..- +. .++.++..+++.++++.++|+...+. ..+..++.+++.+ .+.+. .... ......|.++.+
T Consensus 222 ~~~~~---~~-~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~l~~----~L~~~--~~~~-~~~~~~~~~~~~ 288 (347)
T 1jg8_A 222 RARKA---RK-MLGGGMRQAGVLAAAGIIALTKMVDR--LKEDHENARFLAL----KLKEI--GYSV-NPEDVKTNMVIL 288 (347)
T ss_dssp HHHHH---HH-HHTCCCSSTHHHHHHHHHHHHHSSTT--HHHHHHHHHHHHH----HHHHH--TCBC-CGGGCCSSEEEE
T ss_pred HHHHH---HH-HcCCchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----HHHhc--Ccee-ccCCCcceEEEE
Confidence 65421 00 13345556677778888888764321 2233333344443 33222 2211 111335667777
Q ss_pred EEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.+.... ....++.+.|.++||.+++.+ +.+|+.++..++++++++++++|.+++++
T Consensus 289 ~~~~~~-------~~~~~~~~~l~~~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 289 RTDNLK-------VNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp ECTTSS-------SCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred Eccccc-------CCHHHHHHHHHHCCCEEecCCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 775211 015678888999999999874 78999888889999999999999988764
No 177
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.68 E-value=2.9e-15 Score=167.21 Aligned_cols=311 Identities=14% Similarity=0.057 Sum_probs=194.6
Q ss_pred cHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccC
Q 002941 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~ 497 (863)
.|++.+|+.+++++..+ ...+...+|.++|+++++. +.+++++||++|++.+++.+ + . . .|
T Consensus 19 ~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~al~~~~~~~-~-~----~--~g--- 79 (393)
T 1mdo_A 19 GAEELAAVKTVLDSGWI-----TTGPKNQELEAAFCRLTGN---QYAVAVSSATAGMHIALMAL-G-I----G--EG--- 79 (393)
T ss_dssp CHHHHHHHHHHHHHTCC-----SSSHHHHHHHHHHHHHHCC---SEEEEESCHHHHHHHHHHHT-T-C----C--TT---
T ss_pred CHHHHHHHHHHHhcCCc-----CCChHHHHHHHHHHHHhCC---CcEEEecChHHHHHHHHHHc-C-C----C--CC---
Confidence 48899999999887532 2357788999999999983 58999999999999999876 1 0 0 12
Q ss_pred CCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcc-hhhhhhcccc
Q 002941 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVEHK 576 (863)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~-~~~~~~~~~~ 576 (863)
.+|++...+|++... ++...|.. +..++... .+
T Consensus 80 ---------d~Vl~~~~~~~~~~~-~~~~~g~~----------------------------~~~v~~~~~~~-------- 113 (393)
T 1mdo_A 80 ---------DEVITPSMTWVSTLN-MIVLLGAN----------------------------PVMVDVDRDTL-------- 113 (393)
T ss_dssp ---------CEEEEESSSCHHHHH-HHHHTTCE----------------------------EEEECBCTTTC--------
T ss_pred ---------CEEEeCCCccHhHHH-HHHHCCCE----------------------------EEEEeccCCcC--------
Confidence 579999999988643 22221100 00111100 00
Q ss_pred ccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCe
Q 002941 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (863)
Q Consensus 577 ~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gil 656 (863)
..| .+.+++.+. .++.+|++.+. . |...+ +++|.++|++||++
T Consensus 114 -------------~~d--------~~~l~~~l~--------~~~~~v~~~~~-~---G~~~~----~~~i~~l~~~~~~~ 156 (393)
T 1mdo_A 114 -------------MVT--------PEHIEAAIT--------PQTKAIIPVHY-A---GAPAD----LDAIYALGERYGIP 156 (393)
T ss_dssp -------------CBC--------HHHHHHHCC--------TTEEEECCBCG-G---GCCCC----HHHHHHHHHHHTCC
T ss_pred -------------CCC--------HHHHHHhcC--------CCceEEEEeCC-C---CCcCC----HHHHHHHHHHcCCe
Confidence 011 234555553 25677887774 3 44433 89999999999999
Q ss_pred EEEecccc-cccccCCcchhhhcCCCCcEEEec----cccCCCCCCceeeecc-HHHHHhhhcCCccc------------
Q 002941 657 VIFDEVFT-GFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFVGDSKLK------------ 718 (863)
Q Consensus 657 LI~DEV~T-GfGRtG~~~a~e~~gv~PDivt~s----KgLggG~~Pigav~~~-~~i~~~l~~~~~~~------------ 718 (863)
+|+||+|+ |+...|.. ++. +|++++| |+++|| .+|+++++ +++++.+.......
T Consensus 157 li~D~a~~~g~~~~~~~-----~~~-~d~~~~S~~k~K~l~~~--~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 228 (393)
T 1mdo_A 157 VIEDAAHATGTSYKGRH-----IGA-RGTAIFSFHAIKNITCA--EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGG 228 (393)
T ss_dssp BCEECTTCTTCEETTEE-----TTS-SSEEEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHTBTTEECC--------
T ss_pred EEEECccccCCeECCee-----cCC-CCeEEEeCCCCCccccc--cceEEEeCCHHHHHHHHHHHhcCCcccchhhhccc
Confidence 99999997 44334432 233 8999877 999876 47888886 78887664210000
Q ss_pred -eee-----cccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC-ee-----EecccceE
Q 002941 719 -ALL-----HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT-VQ-----RVVALGTL 786 (863)
Q Consensus 719 -~~~-----~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~-v~-----~vrg~Gl~ 786 (863)
.+. .+..+..+++.++++++.++.++ ++.++..++.+++. +.+.+.+. +. ..++.+.+
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~--------~~L~~~~~~~~~~~~~~~~~~~~~ 298 (393)
T 1mdo_A 229 RAPQAEVLAPGYKYNLPDLNAAIALAQLQKLD--ALNARRAAIAAQYH--------QAMADLPFQPLSLPSWEHIHAWHL 298 (393)
T ss_dssp ---CCEESSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHH--------HHHHTSSCEECCCCSSCEECCCSC
T ss_pred ccccccccccCccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--------HHHhcCCcccccCCCCCCCceeEE
Confidence 000 11124458888888888777543 22333333333333 23334441 10 12345567
Q ss_pred EEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------------------------CCEEEEecCCCCcHHHHH
Q 002941 787 CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------------------------GNVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 787 ~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------------------------g~~lr~~ppl~~t~eeid 840 (863)
+.+.+...... ....++.+.|.++||.+++. ...+|+.+...+|++|++
T Consensus 299 ~~v~~~~~~~~-----~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~ 373 (393)
T 1mdo_A 299 FIIRVDEARCG-----ITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFD 373 (393)
T ss_dssp EEEECCHHHHS-----SCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHH
T ss_pred EEEEecccccc-----cCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHH
Confidence 78877531000 01567889999999988752 126898777778999999
Q ss_pred HHHHHHHHHHHHH
Q 002941 841 QLLLKLYQRLEEF 853 (863)
Q Consensus 841 ~~v~~L~~~l~~l 853 (863)
+++++|+++++..
T Consensus 374 ~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 374 RVITALHQIAGQG 386 (393)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHhcC
Confidence 9999999887654
No 178
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.68 E-value=7.5e-16 Score=169.84 Aligned_cols=312 Identities=14% Similarity=0.010 Sum_probs=181.2
Q ss_pred cHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccC
Q 002941 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~ 497 (863)
+|+|.+|+.+++.... .+..+...+|.++|+++++. +..+|++||++|++.|++.+.. . |
T Consensus 28 ~p~v~~ai~~~~~~~~-----~~~~~~~~~l~~~la~~~~~---~~~i~~~~g~~a~~~a~~~~~~-~--------g--- 87 (359)
T 3pj0_A 28 LTEALQNIDDNLESDI-----YGNGAVIEDFETKIAKILGK---QSAVFFPSGTMAQQIALRIWAD-R--------K--- 87 (359)
T ss_dssp HHHHTTTSCTTCBCCB-----TTBSHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHHHH-H--------H---
T ss_pred CHHHHHHHHhhcccCc-----ccCCHHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHHh-c--------C---
Confidence 6788888777432211 12456788999999999874 4567779999999999998742 1 2
Q ss_pred CCccccccccEEEEecCCCccCcccc--c-eecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcc
Q 002941 498 KDTTEKCIELKVLALKGSYHGDTLGA--M-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (863)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~ga--l-s~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~ 574 (863)
...+|.....+|...... + ...+ ...+.+|...
T Consensus 88 --------~~~vvi~~~~~~~~~~~~~~~~~~~g------------------------------~~~~~v~~~~------ 123 (359)
T 3pj0_A 88 --------ENRRVAYHPLSHLEIHEQDGLKELQQ------------------------------ITPLLLGTAN------ 123 (359)
T ss_dssp --------TCCEEEECTTCHHHHSSTTHHHHHHC------------------------------CEEEECSCTT------
T ss_pred --------CCcEEEEeccceeeehhcchHHHhcC------------------------------ceEEecCCcC------
Confidence 133666666666543221 1 1111 0011111000
Q ss_pred ccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC
Q 002941 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (863)
Q Consensus 575 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g 654 (863)
+ .-| .+. |++. .+++++|++++. ++..|..+++.+++++|.++|++||
T Consensus 124 ------------~--~~d--------~~~----l~~~-----~~~~~~v~~~~p-~n~~~G~~~~~~~l~~l~~~~~~~~ 171 (359)
T 3pj0_A 124 ------------Q--LLT--------IDD----IKSL-----REPVSSVLIELP-QREIGGQLPAFEELEKISEYCHEQG 171 (359)
T ss_dssp ------------S--CCC--------HHH----HHTC-----SSCCSEEEEESS-BGGGTSBCCCHHHHHHHHHHHHHHT
T ss_pred ------------C--CcC--------HHH----HHhc-----cCCceEEEEEec-ccCCCcccCCHHHHHHHHHHHHHcC
Confidence 0 011 122 3221 245778888876 6665446778999999999999999
Q ss_pred CeEEEeccccccc--ccCCcchhhhcCCCCcEE--EeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccH
Q 002941 655 IPVIFDEVFTGFW--RLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHA 730 (863)
Q Consensus 655 ilLI~DEV~TGfG--RtG~~~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~p 730 (863)
++||+||++..+. ..|.. ...+....|++ +++|+++++ .. |++++++++++.+... +....+.++..++
T Consensus 172 ~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~sK~~~~~-~g-g~~~~~~~l~~~~~~~---~~~~~~~~~~~~~ 244 (359)
T 3pj0_A 172 ISLHLDGARLWEITPFYQKS--AEEICALFDSVYVSFYKGIGGI-AG-AILAGNDDFVQEAKIW---KRRYGGDLISLYP 244 (359)
T ss_dssp CEEEEEETTCGGGHHHHTCC--HHHHHTTCSEEEEESSSTTCCS-SC-EEEEECHHHHHHHHHH---HHHTTCCCSCCHH
T ss_pred CEEEEECcchhcchhhhCCC--HHHhhccCCEEEEeccccCCCc-ce-EEEECCHHHHHHHHHH---HHHhCCCcchhHH
Confidence 9999999984221 11211 11111234776 789998765 22 6678899999887531 0112233444455
Q ss_pred HHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe--cccceEEEEEEccCCcCCCCchHHHHHH
Q 002941 731 LGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV--VALGTLCAIELQAAGCNAGYGSLYAASL 808 (863)
Q Consensus 731 la~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v--rg~Gl~~~iel~~~~~~~~~~~~~~~~l 808 (863)
.+++ +.++++... +...+..++.+++ .+.+.++|.+.-. ...+.++.+.+.... ......+
T Consensus 245 ~~~a-~~~~l~~~~--~~~~~~~~~~~~l--------~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~l 307 (359)
T 3pj0_A 245 YILS-ADYYFEKRI--GKMAEYFEAAKGL--------AERFNSCSGVKTVPEVPVSNMFHVYFENSA------DEIGAIL 307 (359)
T ss_dssp HHHH-HHHHHHHHG--GGHHHHHHHHHHH--------HHHHHTSTTEEEESSSCSSSEEEEEESSCH------HHHHHHH
T ss_pred HHHH-HHHHHHHHH--HHhHHHHHHHHHH--------HHHHhhCCCceeeccCCcceEEEEEecCcc------chhHHHH
Confidence 5544 445665432 2222333333333 2334456554332 345566667665321 1135678
Q ss_pred HHHHHHCCcEEEecC-------CEEEEecC---CCCcHHHHHHHHHHHHHH
Q 002941 809 LKKLREDGVYMRPLG-------NVIYLMCG---PCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 809 ~~~l~e~GV~~~p~g-------~~lr~~pp---l~~t~eeid~~v~~L~~~ 849 (863)
.+.|.++||+++|.. ..+|+... ...+.+++++++++|.++
T Consensus 308 ~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 308 TKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp HHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 889999999998742 35666432 235788899998888765
No 179
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.68 E-value=1.8e-15 Score=167.49 Aligned_cols=314 Identities=12% Similarity=0.084 Sum_probs=189.1
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~ 496 (863)
-+|++.+|+.++++...+ ...+...+|.++|+++++. +.++|++||++|++.+++.+ +.+ .. .|
T Consensus 11 ~~~~v~~a~~~~~~~~~~-----~~~~~~~~l~~~la~~~~~---~~v~~~~ggt~al~~~~~~~-~~~---~~--~g-- 74 (375)
T 2fnu_A 11 LDKEDKKAVLEVLNSKQL-----TQGKRSLLFEEALCEFLGV---KHALVFNSATSALLTLYRNF-SEF---SA--DR-- 74 (375)
T ss_dssp CCHHHHHHHHHHHTSSCC-----SSSHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHS-SCC---CT--TS--
T ss_pred CCHHHHHHHHHHHHcCcc-----cCChHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHh-ccc---CC--CC--
Confidence 479999999999876321 2356788999999999973 58999999999999999876 100 00 12
Q ss_pred CCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcccc
Q 002941 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (863)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~ 576 (863)
.+|++...+||+........ |.. .+.+|...
T Consensus 75 ----------d~Vl~~~~~~~~~~~~~~~~-g~~------------------------------~~~~~~~~-------- 105 (375)
T 2fnu_A 75 ----------NEIITTPISFVATANMLLES-GYT------------------------------PVFAGIKN-------- 105 (375)
T ss_dssp ----------CEEEECSSSCTHHHHHHHHT-TCE------------------------------EEECCBCT--------
T ss_pred ----------CEEEECCCccHhHHHHHHHC-CCE------------------------------EEEeccCC--------
Confidence 57999999998865443221 100 00011000
Q ss_pred ccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCe
Q 002941 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (863)
Q Consensus 577 ~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gil 656 (863)
+...| .+.+++.+. +++.+|++... .|.+.+ +++|.++|++||++
T Consensus 106 -----------~~~~d--------~~~l~~~i~--------~~~~~v~~~~~----tG~~~~----l~~i~~l~~~~~~~ 150 (375)
T 2fnu_A 106 -----------DGNID--------ELALEKLIN--------ERTKAIVSVDY----AGKSVE----VESVQKLCKKHSLS 150 (375)
T ss_dssp -----------TSSBC--------GGGSGGGCC--------TTEEEEEEECG----GGCCCC----HHHHHHHHHHHTCE
T ss_pred -----------CCCCC--------HHHHHhhcC--------cCceEEEEeCC----cCCccC----HHHHHHHHHHcCCE
Confidence 00001 012222221 24555554442 455554 89999999999999
Q ss_pred EEEecccccccccCCcchhhhcCCCCcEE--Eec--cccCCCCCCceeeecc--HHHHHhhhcCCccce----------e
Q 002941 657 VIFDEVFTGFWRLGVETTADLLGCVPDIA--CYG--KLLTGGVIPLAATLAT--NAVFDSFVGDSKLKA----------L 720 (863)
Q Consensus 657 LI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~s--KgLggG~~Pigav~~~--~~i~~~l~~~~~~~~----------~ 720 (863)
+|+||+|+ +|... ....++..+|++ +++ |.++.| +|+++++ +++++.+........ .
T Consensus 151 li~D~a~~-~~~~~---~~~~~~~~~~i~~~s~s~~K~~~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (375)
T 2fnu_A 151 FLSDSSHA-LGSEY---QNKKVGGFALASVFSFHAIKPITTA---EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVK 223 (375)
T ss_dssp EEEECTTC-TTCEE---TTEETTSSSSEEEEECCTTSSSCCS---SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEES
T ss_pred EEEECccc-cCCeE---CCeeccccCCeEEEeCCCCCCcccc---CceEEEeCCHHHHHHHHHHHhcCCccccccccccc
Confidence 99999995 44332 112234334655 677 999654 6777763 778766542100000 0
Q ss_pred ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec------ccceEEEEEEccC
Q 002941 721 LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV------ALGTLCAIELQAA 794 (863)
Q Consensus 721 ~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr------g~Gl~~~iel~~~ 794 (863)
..+.++..+++.++++++.++.++ +..+..+.+.+.+ .+.+++.|.+.-.. +.+.++.+.+...
T Consensus 224 ~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l----~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (375)
T 2fnu_A 224 SIGHNFRLNEIQSALGLSQLKKAP------FLMQKREEAALTY----DRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQK 293 (375)
T ss_dssp SCCCBCCCCHHHHHHHHHHHTTHH------HHHHHHHHHHHHH----HHHHTTCSSEEESGGGCSSCCCCSCEEEEECGG
T ss_pred cccccCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHH----HHHhhcCCCccccCCCCCCCcceEEEEEEeCcc
Confidence 123345678888888777655432 2233333333333 23344555432221 2344556666432
Q ss_pred CcCCCCchHHHHHHHHHHHHCCcEEEe----c----------------------CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKLREDGVYMRP----L----------------------GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l~e~GV~~~p----~----------------------g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
. . .....+.+.|.++||.++. . .+.+|+.++..+|++|+++++++|++
T Consensus 294 ~----~--~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~ 367 (375)
T 2fnu_A 294 F----F--TCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLK 367 (375)
T ss_dssp G----G--GGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred c----c--chHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHH
Confidence 1 0 0256788899999999872 1 15799988888899999999999999
Q ss_pred HHHHH
Q 002941 849 RLEEF 853 (863)
Q Consensus 849 ~l~~l 853 (863)
+++++
T Consensus 368 ~~~~~ 372 (375)
T 2fnu_A 368 TFESF 372 (375)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
No 180
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.67 E-value=4.5e-16 Score=176.93 Aligned_cols=262 Identities=16% Similarity=0.072 Sum_probs=165.0
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+ .+.+++++||++|++.|++.+++ .| .+||+...+|||
T Consensus 77 r~~~p~~~~l~~~la~~~g---~~~~~~~~sG~~Ai~~al~~l~~---------~G------------d~Vi~~~~~y~~ 132 (414)
T 3ndn_A 77 RYGNPTVSVFEERLRLIEG---APAAFATASGMAAVFTSLGALLG---------AG------------DRLVAARSLFGS 132 (414)
T ss_dssp TTCCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHTTCC---------TT------------CEEEEESCCCHH
T ss_pred CCCChHHHHHHHHHHHHHC---CCcEEEECCHHHHHHHHHHHHhC---------CC------------CEEEEcCCccch
Confidence 4567889999999999987 36899999999999999986621 12 579999999998
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.......... . .|...+.+|. +|
T Consensus 133 ~~~~~~~~~~--------------~-------------~g~~~~~v~~------------------------~d------ 155 (414)
T 3ndn_A 133 CFVVCSEILP--------------R-------------WGVQTVFVDG------------------------DD------ 155 (414)
T ss_dssp HHHHHHTHHH--------------H-------------TTCEEEEECT------------------------TC------
T ss_pred HHHHHHHHHH--------------H-------------cCcEEEEeCC------------------------CC------
Confidence 5322111000 0 0000011110 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. .++.+|++|+. ++..|.+.+ +++|.++|++||++||+||+++ . |..+....+
T Consensus 156 --~~~l~~ai~--------~~t~~v~le~p-~NptG~~~~----l~~i~~la~~~g~~livDe~~~-~---~~~~~~~~~ 216 (414)
T 3ndn_A 156 --LSQWERALS--------VPTQAVFFETP-SNPMQSLVD----IAAVTELAHAAGAKVVLDNVFA-T---PLLQQGFPL 216 (414)
T ss_dssp --HHHHHHHTS--------SCCSEEEEESS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT-H---HHHCCCGGG
T ss_pred --HHHHHHhcC--------CCCeEEEEECC-CCCCCcccc----HHHHHHHHHHcCCEEEEECCCc-c---cccCCchhc
Confidence 244555553 24678888997 999998865 8999999999999999999995 2 222222345
Q ss_pred CCCCcEEEeccccCC-CCCCceeeeccHHHHH-hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHH
Q 002941 679 GCVPDIACYGKLLTG-GVIPLAATLATNAVFD-SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (863)
Q Consensus 679 gv~PDivt~sKgLgg-G~~Pigav~~~~~i~~-~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~ 756 (863)
|....+.+++|.+++ |.+++|+++++++.+. .+.... ..++. ..+|..+++++..++.+.. ..++..++.
T Consensus 217 g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~----~~~g~--~~~~~~a~~~~~~l~~l~~--r~~~~~~~a 288 (414)
T 3ndn_A 217 GVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLM----RHTGP--AMSAFNAWVLLKGLETLAI--RVQHSNASA 288 (414)
T ss_dssp TCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHH----HHHCC--CCCHHHHHHHHHHGGGHHH--HHHHHHHHH
T ss_pred CCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHH----HHcCC--CCCHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 553334457899987 6578999999988776 443210 01222 3478888777777765531 233444444
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcE
Q 002941 757 RILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVY 818 (863)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~ 818 (863)
+++.+ .+.++|.+..| +|.|.|+++++..... .....+.++...|...++.
T Consensus 289 ~~l~~--------~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~---~~~~~~~~~~~~l~~~~~~ 357 (414)
T 3ndn_A 289 QRIAE--------FLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED---VAKQRAFEVLDKMRLIDIS 357 (414)
T ss_dssp HHHHH--------HHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG---GHHHHHHHHHHHCSSSEEC
T ss_pred HHHHH--------HHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc---ccHHHHHHHHHhCccceEc
Confidence 44443 34456655544 6789999999964200 0012356677777655544
Q ss_pred E
Q 002941 819 M 819 (863)
Q Consensus 819 ~ 819 (863)
+
T Consensus 358 ~ 358 (414)
T 3ndn_A 358 N 358 (414)
T ss_dssp S
T ss_pred C
Confidence 4
No 181
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.67 E-value=5.4e-16 Score=172.38 Aligned_cols=315 Identities=12% Similarity=0.042 Sum_probs=184.9
Q ss_pred CCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccc
Q 002941 413 PDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVL 492 (863)
Q Consensus 413 lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~ 492 (863)
+|+ ++|.+.+++.+++.+..... ..+..+...+|.++|+++++ .++++|++||++|++.|++.+ . . +
T Consensus 8 l~~-~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~l~~~la~~~~---~~~~i~~~sgt~al~~~l~~l-~-~----~-- 74 (373)
T 3frk_A 8 FKP-MHDEIEYEIKFKFEEIYKRN-WFILGDEDKKFEQEFADYCN---VNYCIGCGNGLDALHLILKGY-D-I----G-- 74 (373)
T ss_dssp CHH-HHHHHHHHHHHHHHHHHHHT-CCSSSHHHHHHHHHHHHHHT---SSEEEEESCHHHHHHHHHHHT-T-C----C--
T ss_pred CCc-ccCCCCHHHHHHHHHHHHCC-CccCCchHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHc-C-C----C--
Confidence 344 45555555444443321111 11346788999999999998 368999999999999999876 1 0 0
Q ss_pred ccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCc-chhhhh
Q 002941 493 VDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSK 571 (863)
Q Consensus 493 tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~~ 571 (863)
+| .+||+...+||+.... +...|.. +..++.. ..+
T Consensus 75 ~g------------d~Vi~~~~~~~~~~~~-~~~~g~~----------------------------~~~~~~~~~~~--- 110 (373)
T 3frk_A 75 FG------------DEVIVPSNTFIATALA-VSYTGAK----------------------------PIFVEPDIRTY--- 110 (373)
T ss_dssp TT------------CEEEEETTSCTHHHHH-HHHHSCE----------------------------EEEECEETTTT---
T ss_pred Cc------------CEEEECCCCcHHHHHH-HHHcCCE----------------------------EEEEecccccc---
Confidence 12 5799999999885433 2222100 0001100 000
Q ss_pred hccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHH
Q 002941 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (863)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~ 651 (863)
. -| .+.+++.+. +++.+|+ | .+..|...+ +++|.++|+
T Consensus 111 ----------------~--~d--------~~~l~~~l~--------~~~~~v~--~--~n~~G~~~~----l~~i~~l~~ 148 (373)
T 3frk_A 111 ----------------N--ID--------PSLIESAIT--------EKTKAII--A--VHLYGQPAD----MDEIKRIAK 148 (373)
T ss_dssp ----------------E--EC--------GGGTGGGCC--------TTEEEEE--E--ECCTTCCCC----HHHHHHHHH
T ss_pred ----------------C--cC--------HHHHHHhcC--------CCCeEEE--E--ECCCcCccc----HHHHHHHHH
Confidence 0 01 012222221 2566666 3 345666554 899999999
Q ss_pred HcCCeEEEecccccccccCCcchhhhcCCCCcEEEec----cccCC-CCCCceeeecc-HHHHHhhhc---CCc---cce
Q 002941 652 NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTG-GVIPLAATLAT-NAVFDSFVG---DSK---LKA 719 (863)
Q Consensus 652 ~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s----KgLgg-G~~Pigav~~~-~~i~~~l~~---~~~---~~~ 719 (863)
+||++||+||+|+ +| ..+..+.++..+|++++| |++++ |. .|+++++ +++++.+.. ... ...
T Consensus 149 ~~~~~li~D~a~~-~g---~~~~~~~~~~~~d~~~~S~~~~K~l~~~g~--gg~~~~~~~~~~~~~~~~~~~g~~~~~~~ 222 (373)
T 3frk_A 149 KYNLKLIEDAAQA-HG---SLYKGMKVGSLGDAAGFSFYPAKNLGSLGD--GGAVVTNDKDLAEKIKALSNYGSEKKYHH 222 (373)
T ss_dssp HHTCEEEEECTTC-TT---CEETTEETTSSSSEEEEECCTTSSSCCSSS--CEEEEESCHHHHHHHHHHHBTTCSBTTBC
T ss_pred HcCCEEEEECCcc-cC---CEECCEeccccccEEEEeCcCCCccCccce--eEEEEeCCHHHHHHHHHHHhcCcccCCcc
Confidence 9999999999995 32 223344556668999888 99988 63 6777765 556554431 110 111
Q ss_pred eecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe---c-ccceEEEEEEccCC
Q 002941 720 LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV---V-ALGTLCAIELQAAG 795 (863)
Q Consensus 720 ~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v---r-g~Gl~~~iel~~~~ 795 (863)
...++++..+++++|++++.++.++ ++.++..++.+++. +.+.+.+ +.-. . ....++.+.+....
T Consensus 223 ~~~g~~~~~~~~~aa~~~~~~~~~~--~~~~~~~~~~~~~~--------~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 291 (373)
T 3frk_A 223 IYKGFNSRLDELQAGFLRVKLKYLD--KWNEERRKIAQKYI--------AGINNPN-VIIPVEADYAKHVWYTFVIRSEK 291 (373)
T ss_dssp CSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHH--------HHCCCTT-EECCCCCTTEECCCSSEEEEESS
T ss_pred ccccccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--------HHhccCc-eEeccCCCCCceeeEEEEEEeCC
Confidence 2234567778999988888776543 22333333333333 2333443 2110 0 11111112221111
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEecC----------------------------CEEEEecCCCCcHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRPLG----------------------------NVIYLMCGPCSSPEVCSQLLLKLY 847 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p~g----------------------------~~lr~~ppl~~t~eeid~~v~~L~ 847 (863)
...+.+.|.++||.+++.. ..+|+.....+|++|||+++++|+
T Consensus 292 ---------~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~ 362 (373)
T 3frk_A 292 ---------RDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKIN 362 (373)
T ss_dssp ---------HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHH
Confidence 5678899999999987421 578888778899999999999998
Q ss_pred HHHHH
Q 002941 848 QRLEE 852 (863)
Q Consensus 848 ~~l~~ 852 (863)
+...+
T Consensus 363 ~~~~~ 367 (373)
T 3frk_A 363 AWKLE 367 (373)
T ss_dssp TCC--
T ss_pred HHhhh
Confidence 76544
No 182
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.67 E-value=3.1e-14 Score=165.17 Aligned_cols=217 Identities=12% Similarity=0.041 Sum_probs=132.4
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-CCcEEEe--ccccCCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGGVI 696 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivt~--sKgLggG~~ 696 (863)
+.+|++... .+..|.+-+ +++|.++|++||++|++||+++|+...+. +.....|+ .+|++++ +|+++++ +
T Consensus 259 ~~~vv~~~~-~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~~~D~i~~s~hK~l~~p-~ 331 (497)
T 2qma_A 259 PFAIVGTAG-TTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQT-I 331 (497)
T ss_dssp EEEEEEEBS-CTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGGGCSEEEEETTTTTCCC-S
T ss_pred ceEEEEcCC-CCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcccCCEEEEcchhccCCC-c
Confidence 445666543 677787655 99999999999999999999988866555 44444566 7899987 8999988 6
Q ss_pred CceeeeccHH-HHHhhhcCCccceeecccCCCccHHHH----------HHHHHHHHHhcChhhHHhHHHHHHHHHHHHHH
Q 002941 697 PLAATLATNA-VFDSFVGDSKLKALLHGHSYSAHALGC----------AAAAKSIKWFKDPQTNHNIIPERRILRELWDL 765 (863)
Q Consensus 697 Pigav~~~~~-i~~~l~~~~~~~~~~~~~T~~~~pla~----------AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~ 765 (863)
++|+++++++ .++.+..... .+....+...+++++ .+..++++.+..+ .++.+.++...+.+++.
T Consensus 332 ~~G~l~~~~~~~~~~~~~~~~--yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~-g~~~~~~~~~~~a~~l~- 407 (497)
T 2qma_A 332 SCGALLVNDKSNFKFLLHHAD--YLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPK-ALGDMYDHLLAQTLEVA- 407 (497)
T ss_dssp SCEEEEESCGGGGGGGCC----------------------CCSCCCTHHHHHHHHHHTCHH-HHHHHHHHHHHHHHHHH-
T ss_pred ceEEEEEeCHHHHHHhcCCch--hcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHH-
Confidence 9999998654 3444432110 011111112233332 1234566666433 23334444444444443
Q ss_pred HHHHHHhcCCCeeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe----cC-CEEEEec-CCCCcHHH
Q 002941 766 ELIQQISSHRTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----LG-NVIYLMC-GPCSSPEV 838 (863)
Q Consensus 766 ~l~~~~~~~p~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p----~g-~~lr~~p-pl~~t~ee 838 (863)
+.+.+.+.+.-+ ...+.++.+.+.... .........+.+.|.++|+++.+ .+ ..+|++. +..+|+++
T Consensus 408 ---~~L~~~~~~~~~~~~~~~~v~f~~~~~~---~~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~ed 481 (497)
T 2qma_A 408 ---DMIRTNDQFELLAEPSLSTVLFRATHET---ADLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTSD 481 (497)
T ss_dssp ---HHHHTCTTEEECSCCSSSEEEEEECCSS---SCHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHH
T ss_pred ---HHHhhCCCeEEEcCCCceEEEEEEcCCc---cCHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHH
Confidence 334445543221 234567778775431 01112345678889999998864 22 5799986 78899999
Q ss_pred HHHHHHHHHHHHHHH
Q 002941 839 CSQLLLKLYQRLEEF 853 (863)
Q Consensus 839 id~~v~~L~~~l~~l 853 (863)
+++++++|+++++++
T Consensus 482 i~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 482 FESLLSKINMLAVEL 496 (497)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999887654
No 183
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.67 E-value=1.8e-15 Score=177.37 Aligned_cols=362 Identities=12% Similarity=0.014 Sum_probs=202.1
Q ss_pred cccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCC--C--CCCeEEEeCChhhHHHHHHHHHHH
Q 002941 408 WWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGK--G--WASRAYFSDNGSTAIEIALKMAFR 483 (863)
Q Consensus 408 ~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~--~--~~~~v~f~~SGSeAvE~ALklA~r 483 (863)
++....++ .+|++++++.+++....+.....+..+...++++.+.+..+. . ..+.++++++|++|+..+++....
T Consensus 108 l~~g~~~~-~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~ 186 (533)
T 3f6t_A 108 YCHTELGL-NRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAE 186 (533)
T ss_dssp HHHHTTCC-CHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHH
T ss_pred ccCCCCCc-CCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhh
Confidence 44555666 589999999999876544322233455667777777554121 0 015899999999999999986311
Q ss_pred HHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeec
Q 002941 484 KFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILS 563 (863)
Q Consensus 484 ~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 563 (863)
.. . .++ ..+|++...+|++........+. .+..++
T Consensus 187 ~~--l----~~~----------gd~Viv~~p~~~~~~~~~~~~g~-----------------------------~~~~v~ 221 (533)
T 3f6t_A 187 NH--L----LKK----------GDKIAINEPIFTPYLRIPELKDY-----------------------------ELVEVD 221 (533)
T ss_dssp TT--S----SCT----------TCEEEEESSCCHHHHTSGGGGGS-----------------------------EEEEEC
T ss_pred hh--c----cCC----------cCEEEEcCCCcHHHHHHHHHcCC-----------------------------eEEEEE
Confidence 00 0 010 15799999998876443322111 001111
Q ss_pred CcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCceeCCHHH
Q 002941 564 LPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLF 642 (863)
Q Consensus 564 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIv-EPViqg~gG~~~pp~~f 642 (863)
++... ...+ .-| .+.+++.+. + ++.+|++ .| ++..|.+. +.+.
T Consensus 222 ~~~~~---------------~~~~--~~d--------~~~l~~~l~-------~-~~k~v~l~~p--~NPtG~~~-~~~~ 265 (533)
T 3f6t_A 222 LHSYE---------------KNDW--EIE--------PNEIEKLKD-------P-SIKALIVVNP--TNPTSKEF-DTNA 265 (533)
T ss_dssp CCEET---------------TTTS--EEC--------HHHHHHHSC-------T-TEEEEEEESS--CTTTCBCC-CHHH
T ss_pred ecCCc---------------ccCC--CCC--------HHHHHHHhC-------C-CCeEEEEeCC--CCCCcccc-CHHH
Confidence 11000 0000 001 234555442 2 4455554 55 78888654 7788
Q ss_pred HHHHHHHHH-HcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccC-CCCCCceeeeccHH-----HHHhhhc--
Q 002941 643 QRILVKECQ-NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNA-----VFDSFVG-- 713 (863)
Q Consensus 643 L~~Lrelc~-~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLg-gG~~Pigav~~~~~-----i~~~l~~-- 713 (863)
+++|.++|+ +||+++|+||+|.+|...+........+....+.+|||.+| .| +++|+++++++ +++.+..
T Consensus 266 l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~~~~~~~~~li~~l~~~~ 344 (533)
T 3f6t_A 266 LNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTG-WRLGVIALNEKNVFDDNIAHLDKVE 344 (533)
T ss_dssp HHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGG-GCEEEEEEESSCHHHHHHHTSCHHH
T ss_pred HHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcc-cceEEEEECcHHHHHHHHHhcchhh
Confidence 999999999 69999999999998865443332222233345668999997 67 89999999876 4443210
Q ss_pred ---------C---C------------ccceeecccCCCccHHHHHH-HHHHHHHhc-------ChhhHHhHHHHHHHHHH
Q 002941 714 ---------D---S------------KLKALLHGHSYSAHALGCAA-AAKSIKWFK-------DPQTNHNIIPERRILRE 761 (863)
Q Consensus 714 ---------~---~------------~~~~~~~~~T~~~~pla~AA-alAaL~~l~-------~~~l~~~l~~~~~~l~~ 761 (863)
. . .........+.+.++++.++ ++.++..+. .....+++++..+..++
T Consensus 345 ~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~ 424 (533)
T 3f6t_A 345 LRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYD 424 (533)
T ss_dssp HHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHH
Confidence 0 0 00011233445556555554 322344442 12233344444444444
Q ss_pred HHHHHHHHHHhcCCCeeEecccceEEEEEEccCC---cCCCCch-----HHHHHHHHHH-HHCCcEEEec------CCEE
Q 002941 762 LWDLELIQQISSHRTVQRVVALGTLCAIELQAAG---CNAGYGS-----LYAASLLKKL-REDGVYMRPL------GNVI 826 (863)
Q Consensus 762 ~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~---~~~~~~~-----~~~~~l~~~l-~e~GV~~~p~------g~~l 826 (863)
.+. +.+. .+........|+++.+.+..-. ....+.. ....+++..+ .++||++.|. .+.+
T Consensus 425 ~l~----~~L~-~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~i 499 (533)
T 3f6t_A 425 QLH----DAMQ-APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGEL 499 (533)
T ss_dssp HHH----HHHT-CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSSTTEE
T ss_pred HHH----HhcC-CCccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCCCCEE
Confidence 333 3333 3321122345566666664200 0000000 0123444444 4789999863 3688
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 002941 827 YLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEE 858 (863)
Q Consensus 827 r~~ppl~~t~eeid~~v~~L~~~l~~l~~~~~ 858 (863)
|++. ..++++++++++++|.++++++.+..+
T Consensus 500 Rls~-a~~~~e~i~~~i~~L~~~l~~~~~~~~ 530 (533)
T 3f6t_A 500 RVSQ-ANLPTEDYALIGKQVLELLKEYYEEFK 530 (533)
T ss_dssp EEES-SSSCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEE-eeCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9864 336899999999999999988775543
No 184
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.67 E-value=2e-14 Score=162.95 Aligned_cols=320 Identities=13% Similarity=0.076 Sum_probs=196.4
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~ 496 (863)
..|++.+|+.++++...+. ...+...+|.++|+++++ .+.++|++||++|++.+++.+ . .|
T Consensus 30 ~p~~~~~a~~~~~~~~~y~----~~~~~~~~l~~~la~~~~---~~~v~~~~ggt~al~~~l~~l-~---------~g-- 90 (424)
T 2po3_A 30 DRARLYERLDRALDSQWLS----NGGPLVREFEERVAGLAG---VRHAVATCNATAGLQLLAHAA-G---------LT-- 90 (424)
T ss_dssp CHHHHHHHHHHHHHHTCCS----SSCHHHHHHHHHHHHHHT---SSEEEEESCHHHHHHHHHHHH-T---------CC--
T ss_pred ChHHHHHHHHHHHhcCCcc----cCCHHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHc-C---------CC--
Confidence 3578999999888753211 114678899999999997 368999999999999999876 2 12
Q ss_pred CCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcc-hhhhhhccc
Q 002941 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVEH 575 (863)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~-~~~~~~~~~ 575 (863)
.+|++...+||+..... ...|.. +..++... .+
T Consensus 91 ----------d~Vlv~~~~~~~~~~~~-~~~G~~----------------------------~~~v~~~~~~~------- 124 (424)
T 2po3_A 91 ----------GEVIMPSMTFAATPHAL-RWIGLT----------------------------PVFADIDPDTG------- 124 (424)
T ss_dssp ----------SEEEEESSSCTHHHHHH-HHTTCE----------------------------EEEECBCTTTS-------
T ss_pred ----------CEEEECCCccHHHHHHH-HHcCCE----------------------------EEEEecCCCcC-------
Confidence 57999999999875432 221100 00011100 00
Q ss_pred cccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCC
Q 002941 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (863)
Q Consensus 576 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gi 655 (863)
.-| .+.+++.+. +++.+|++.+. .|... .+++|.++|++||+
T Consensus 125 --------------~~d--------~~~l~~~i~--------~~~~~v~~~~~----tG~~~----~l~~i~~la~~~~~ 166 (424)
T 2po3_A 125 --------------NLD--------PDQVAAAVT--------PRTSAVVGVHL----WGRPC----AADQLRKVADEHGL 166 (424)
T ss_dssp --------------SBC--------HHHHGGGCC--------TTEEEEEEECG----GGCCC----CHHHHHHHHHHTTC
T ss_pred --------------CcC--------HHHHHHhhC--------cCCcEEEEECC----CCCcC----CHHHHHHHHHHcCC
Confidence 001 123333331 24556665332 24333 49999999999999
Q ss_pred eEEEecccc-cccccCCcchhhhcCCCCcEEEec----cccCCCCCCceeeecc-HHHHHhhhcC---Cc---cceeecc
Q 002941 656 PVIFDEVFT-GFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFVGD---SK---LKALLHG 723 (863)
Q Consensus 656 lLI~DEV~T-GfGRtG~~~a~e~~gv~PDivt~s----KgLggG~~Pigav~~~-~~i~~~l~~~---~~---~~~~~~~ 723 (863)
++|+||+|+ |+...|.. ++..+|++++| |+|++ ..+|+++++ +++++.+... .. ......+
T Consensus 167 ~li~Dea~~~g~~~~~~~-----~~~~~di~~~S~sk~K~l~~--~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g 239 (424)
T 2po3_A 167 RLYFDAAHALGCAVDGRP-----AGSLGDAEVFSFHATKAVNA--FEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGG 239 (424)
T ss_dssp EEEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCC--SSCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCC
T ss_pred EEEEECccccCCeECCee-----cccccCEEEEeCCCCCCccC--CCCeEEEeCCHHHHHHHHHHHhcCccccccccccC
Confidence 999999998 77655542 23336888766 99987 478999998 8887766421 00 0000122
Q ss_pred cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec---c-c--ceEEEEEEccCCcC
Q 002941 724 HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV---A-L--GTLCAIELQAAGCN 797 (863)
Q Consensus 724 ~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr---g-~--Gl~~~iel~~~~~~ 797 (863)
.++..+++++++++..++.++ ...++.+.+.+.+ .+.+.+.+.+.-+. | . ..++.+.+.+....
T Consensus 240 ~~~~~~~~~aa~~l~~~~~~~------~~~~~~~~~~~~l----~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~ 309 (424)
T 2po3_A 240 TNAKMSEAAAAMGLTSLDAFP------EVIDRNRRNHAAY----REHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTG 309 (424)
T ss_dssp CBCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHH----HHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHHS
T ss_pred cCCCcCHHHHHHHHHHHHHHH------HHHHHHHHHHHHH----HHHhccCCCccccCCCCCCccccEEEEEEECCccch
Confidence 333456888888877665432 2233333333332 33444555443322 2 1 14566666531000
Q ss_pred CCCchHHHHHHHHHHHHCCcEEEec-C-C------------------------EEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 798 AGYGSLYAASLLKKLREDGVYMRPL-G-N------------------------VIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 798 ~~~~~~~~~~l~~~l~e~GV~~~p~-g-~------------------------~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.....+.+.|.++||.+++. + . .+++.....++++|+++++++|.++++
T Consensus 310 -----~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~ 384 (424)
T 2po3_A 310 -----IHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCAT 384 (424)
T ss_dssp -----SCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHH
T ss_pred -----hhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 01456788899999999762 1 1 166654578899999999999999999
Q ss_pred HHHHHHHhhh
Q 002941 852 EFDKVEEKLK 861 (863)
Q Consensus 852 ~l~~~~~~~~ 861 (863)
...+..+.+.
T Consensus 385 ~~~~~~~~~~ 394 (424)
T 2po3_A 385 RGRELTARHR 394 (424)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHhhhhc
Confidence 8877766654
No 185
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.66 E-value=8.8e-16 Score=170.59 Aligned_cols=311 Identities=14% Similarity=0.056 Sum_probs=183.7
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~ 496 (863)
++|.+.+++.+++.+..... ..+..+...+|.++|+++++. ++++|++||++|++.|++.+ + . + +|
T Consensus 10 ~~~~~~~~v~~a~~~~~~~~-~~~~~~~~~~l~~~la~~~~~---~~~~~~~sGt~al~~al~~~-~-~----~--~g-- 75 (367)
T 3nyt_A 10 QQARIKDKIDAGIQRVLRHG-QYILGPEVTELEDRLADFVGA---KYCISCANGTDALQIVQMAL-G-V----G--PG-- 75 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-CCSSCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHT-T-C----C--TT--
T ss_pred cccccCHHHHHHHHHHHhcC-CccCChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHh-C-C----C--Cc--
Confidence 45555555555444322111 113567888999999999983 58999999999999999877 1 0 0 12
Q ss_pred CCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcccc
Q 002941 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (863)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~ 576 (863)
.+||+...+|++....+...+... ..++....
T Consensus 76 ----------d~Vi~~~~~~~~~~~~~~~~G~~~-----------------------------~~~~~~~~--------- 107 (367)
T 3nyt_A 76 ----------DEVITPGFTYVATAETVALLGAKP-----------------------------VYVDIDPR--------- 107 (367)
T ss_dssp ----------CEEEEESSSCTHHHHHHHHTTCEE-----------------------------EEECBCTT---------
T ss_pred ----------CEEEECCCccHHHHHHHHHcCCEE-----------------------------EEEecCCc---------
Confidence 579999988888654433221100 00111000
Q ss_pred ccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCe
Q 002941 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (863)
Q Consensus 577 ~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gil 656 (863)
.+ .-| .+.+++.+ .+++.+|++++. .|...+ +++|.++|++||++
T Consensus 108 ---------~~--~~d--------~~~l~~~i--------~~~~~~v~~~~~----~G~~~~----~~~i~~la~~~~~~ 152 (367)
T 3nyt_A 108 ---------TY--NLD--------PQLLEAAI--------TPRTKAIIPVSL----YGQCAD----FDAINAIASKYGIP 152 (367)
T ss_dssp ---------TC--SBC--------GGGTGGGC--------CTTEEEECCBCG----GGCCCC----HHHHHHHHHHTTCC
T ss_pred ---------cC--CcC--------HHHHHHhc--------CcCCcEEEeeCC----ccChhh----HHHHHHHHHHcCCE
Confidence 00 001 01222222 236778885543 344433 99999999999999
Q ss_pred EEEecccc-cccccCCcchhhhcCCCCcEEEec----cccCC-CCCCceeeec-cHHHHHhhhc---CCc---cceeecc
Q 002941 657 VIFDEVFT-GFWRLGVETTADLLGCVPDIACYG----KLLTG-GVIPLAATLA-TNAVFDSFVG---DSK---LKALLHG 723 (863)
Q Consensus 657 LI~DEV~T-GfGRtG~~~a~e~~gv~PDivt~s----KgLgg-G~~Pigav~~-~~~i~~~l~~---~~~---~~~~~~~ 723 (863)
||+||+|+ |+...|. ..+..+|++++| |.+++ |. .|++++ ++++++.+.. .+. ......+
T Consensus 153 li~D~a~~~g~~~~~~-----~~~~~~di~~~Sf~~~K~l~~~g~--gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g 225 (367)
T 3nyt_A 153 VIEDAAQSFGASYKGK-----RSCNLSTVACTSFFPSAPLGCYGD--GGAIFTNDDELATAIRQIARHGQDRRYHHIRVG 225 (367)
T ss_dssp BEEECTTTTTCEETTE-----ETTSSSSEEEEECCTTSSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEECSCC
T ss_pred EEEECccccCCeECCe-----eccCCCCEEEEECCCCCcCCCcCc--eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccC
Confidence 99999995 3322232 233334999887 99998 73 777777 5778776543 110 0011225
Q ss_pred cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE-ecccceEEEEEEccCCcCCCCch
Q 002941 724 HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR-VVALGTLCAIELQAAGCNAGYGS 802 (863)
Q Consensus 724 ~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~-vrg~Gl~~~iel~~~~~~~~~~~ 802 (863)
+++..+++.++++++.++.++ ++.++..++.+++.+.| .+.--..+.... ......++.+.+. +
T Consensus 226 ~~~~~~~~~aa~~~~~l~~~~--~~~~~~~~~~~~~~~~L----~~~~~~~~~~~~~~~~~~~~~~~~~~--~------- 290 (367)
T 3nyt_A 226 VNSRLDTLQAAILLPKLEIFE--EEIALRQKVAAEYDLSL----KQVGIGTPFIEVNNISVYAQYTVRMD--N------- 290 (367)
T ss_dssp CBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHH----HHTTCCCCCCCTTEECCCSSEEEECS--S-------
T ss_pred cCCCccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh----ccCCeeccCCCCCCceeeEEEEEEeC--C-------
Confidence 678899999999999988663 23444444444444433 222111111100 0111123333332 1
Q ss_pred HHHHHHHHHHHHCCcEEEecC-------------------------CEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 803 LYAASLLKKLREDGVYMRPLG-------------------------NVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 803 ~~~~~l~~~l~e~GV~~~p~g-------------------------~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
...+.+.|.++||.+++.. ..+++.....+|++|++.+++++.+
T Consensus 291 --~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~ 359 (367)
T 3nyt_A 291 --RESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTN 359 (367)
T ss_dssp --HHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 4578889999999886321 3567765667899999999998864
No 186
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=99.65 E-value=2.7e-16 Score=172.51 Aligned_cols=85 Identities=19% Similarity=0.164 Sum_probs=72.4
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhcCCC-EEEEECCCCCcH-----------HHHHHHHHHHHh-----CCCcEEE
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLP-GILVGDGRLGGI-----------SGTISAYESLKL-----RGYDVVA 283 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l~~p-vilV~~~~~g~i-----------~~~~~~~~~~~~-----~~~~v~g 283 (863)
+|+++|||+||++.|+ +..+ ++|++..+.| +|||.+.++|+| ++++.++++++. .+++|+|
T Consensus 226 ~d~vlVEGqGgl~~P~-~~~t-~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~~~~~V~G 303 (349)
T 2obn_A 226 YDILHIEGQGSLLHPG-STAT-LPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVG 303 (349)
T ss_dssp CSEEEECCCCCTTSTT-CCTH-HHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTSCCCCEEE
T ss_pred CCEEEEeCCCcccCcC-hHhH-HHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhccCCCCcEEE
Confidence 5999999999999999 6554 8999999988 999999999999 999999999976 8899999
Q ss_pred EEEcCCCCC------CHHHHHHhhcCCCCeee
Q 002941 284 VVFEDHGLV------NEVPLMSYLRNRVPVLV 309 (863)
Q Consensus 284 vi~n~~~~~------~~~~~~~~~~~~~pvl~ 309 (863)
|++|....+ +.+.+++. .++||++
T Consensus 304 i~lN~~~~~~~~~~~~~~~ie~~--~glPv~d 333 (349)
T 2obn_A 304 IALNTAHLDEYAAKEAIAHTIAE--TGLPCTD 333 (349)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHH--HCSCEEC
T ss_pred EEEECCCCCHHHHHHHHHHHHHH--HCCCEEE
Confidence 999987432 34445555 5899997
No 187
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.65 E-value=1.2e-14 Score=162.27 Aligned_cols=313 Identities=12% Similarity=0.097 Sum_probs=189.4
Q ss_pred cHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccC
Q 002941 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~ 497 (863)
.|++.+|+.+++++..+. .+..+...+|.++|+++++. +..++++||++|++.|++.+ + . + .|
T Consensus 16 ~~~~~~a~~~~l~~~~~~---~~~~~~~~~l~~~la~~~~~---~~~i~~~sGt~al~~~l~~l-~-~----~--~g--- 78 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQWW---RMGGDEVNSFEREFAAHHGA---AHALAVTNGTHALELALQVM-G-V----G--PG--- 78 (388)
T ss_dssp CHHHHHHHHHHHHTSCCB---TTTCSHHHHHHHHHHHHTTC---SEEEEESCHHHHHHHHHHHT-T-C----C--TT---
T ss_pred CHHHHHHHHHHHHcCCee---ecCCHHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHc-C-C----C--Cc---
Confidence 389999999999873211 12456788999999999974 46677778999999999876 1 0 0 12
Q ss_pred CCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccc
Q 002941 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (863)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~ 577 (863)
.+||+...+||+....+... |.. +..++....
T Consensus 79 ---------d~Vi~~~~~~~~~~~~~~~~-g~~----------------------------~~~v~~~~~---------- 110 (388)
T 1b9h_A 79 ---------TEVIVPAFTFISSSQAAQRL-GAV----------------------------TVPVDVDAA---------- 110 (388)
T ss_dssp ---------CEEEEESSSCTHHHHHHHHT-TCE----------------------------EEEECBCTT----------
T ss_pred ---------CEEEECCCccHHHHHHHHHc-CCE----------------------------EEEEecCCC----------
Confidence 57999999999875433211 100 001111000
Q ss_pred cccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeE
Q 002941 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (863)
Q Consensus 578 ~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilL 657 (863)
.+ .-| .+.+++.+. .++.+|+ |. +..|.+.+ +++|.++|++||++|
T Consensus 111 --------~~--~~d--------~~~l~~~i~--------~~~~~v~--~~--n~tG~~~~----l~~i~~la~~~~~~l 156 (388)
T 1b9h_A 111 --------TY--NLD--------PEAVAAAVT--------PRTKVIM--PV--HMAGLMAD----MDALAKISADTGVPL 156 (388)
T ss_dssp --------TC--CBC--------HHHHHHHCC--------TTEEEEC--CB--CGGGCCCC----HHHHHHHHHHHTCCB
T ss_pred --------cC--CCC--------HHHHHHhcC--------cCceEEE--Ee--CCccCcCC----HHHHHHHHHHcCCEE
Confidence 00 011 244555552 2456666 74 45676654 899999999999999
Q ss_pred EEecccc-cccccCCcchhhhcCCCCcEEEe--c--cccCCCCCCceeeeccHH-H--HHhhhc---CCc---ccee---
Q 002941 658 IFDEVFT-GFWRLGVETTADLLGCVPDIACY--G--KLLTGGVIPLAATLATNA-V--FDSFVG---DSK---LKAL--- 720 (863)
Q Consensus 658 I~DEV~T-GfGRtG~~~a~e~~gv~PDivt~--s--KgLggG~~Pigav~~~~~-i--~~~l~~---~~~---~~~~--- 720 (863)
|+||+|+ |+...|.. ...++ |++++ + |+++|| .+|+++++++ + ++.+.. ... ...+
T Consensus 157 i~D~a~~~g~~~~~~~--~~~~~---~i~~~S~s~~K~l~g~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (388)
T 1b9h_A 157 LQDAAHAHGARWQGKR--VGELD---SIATFSFQNGKLMTAG--EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHK 229 (388)
T ss_dssp CEECTTCTTCEETTEE--GGGSS---SCEEEECCTTSSSCSS--SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCC
T ss_pred EEecchhcCCccCCee--ccccc---ceEEEEccCCCcccCC--CeEEEEECCHHHHHHHHHHHHHhCCCCccCccceee
Confidence 9999996 33333332 22222 55554 4 889876 5888888875 6 555421 100 0001
Q ss_pred ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-------cccceEEEEEEcc
Q 002941 721 LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-------VALGTLCAIELQA 793 (863)
Q Consensus 721 ~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-------rg~Gl~~~iel~~ 793 (863)
..+.++..+++.++++.+.++.+++ ..++..++ ++.+ .+.+.+.|.+.-+ +..+.++.+.+..
T Consensus 230 ~~g~~~~~~~~~~a~~~~~~~~l~~--~~~~~~~~----~~~l----~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (388)
T 1b9h_A 230 IAGSNMRLNEFSASVLRAQLARLDE--QIAVRDER----WTLL----SRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPG 299 (388)
T ss_dssp SCCCBCBCBHHHHHHHHHHHTTHHH--HHHHHHHH----HHHH----HHHHHTSTTCEECCCCTTCCBCCCSEEEEECTT
T ss_pred cccccCCcCHHHHHHHHHHHHHHHH--HHHHHHHH----HHHH----HHHhccCCCccccCCCcCCCccceEEEEEEeCC
Confidence 1134455788888887777665532 23333333 3333 2233444433222 2336788887753
Q ss_pred CCcCCCCchHHHHHHHHHHHHCCcEEEecC----------------------------------CEEEEecCCCC-cHHH
Q 002941 794 AGCNAGYGSLYAASLLKKLREDGVYMRPLG----------------------------------NVIYLMCGPCS-SPEV 838 (863)
Q Consensus 794 ~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g----------------------------------~~lr~~ppl~~-t~ee 838 (863)
.. ......+.+.|.++||.+++.- ..+++.....+ |++|
T Consensus 300 ~~------~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~ed 373 (388)
T 1b9h_A 300 LT------EERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPE 373 (388)
T ss_dssp CC------HHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHH
T ss_pred cC------cccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHH
Confidence 20 1135678899999999997521 24777666677 9999
Q ss_pred HHHHHHHHHHHHHH
Q 002941 839 CSQLLLKLYQRLEE 852 (863)
Q Consensus 839 id~~v~~L~~~l~~ 852 (863)
||+++++|.+++++
T Consensus 374 i~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 374 LHATAEIIADAVAR 387 (388)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887753
No 188
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.64 E-value=6.3e-15 Score=165.55 Aligned_cols=322 Identities=13% Similarity=0.067 Sum_probs=189.8
Q ss_pred cHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccC
Q 002941 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~ 497 (863)
.|++.+|+.++++.. +.. ...+...+|.++|+++++ .+.++|++||++|++.+++.+ + . . .|
T Consensus 11 ~~~v~~a~~~~~~~~-~~~---~~g~~~~~l~~~la~~~~---~~~v~~~~ggt~al~~~~~~l-~-~----~--~g--- 72 (394)
T 1o69_A 11 GGNELKYIEEVFKSN-YIA---PLGEFVNRFEQSVKDYSK---SENALALNSATAALHLALRVA-G-V----K--QD--- 72 (394)
T ss_dssp -CCHHHHHHHHHHHT-TTS---CTTHHHHHHHHHHHHHHC---CSEEEEESCHHHHHHHHHHHT-T-C----C--TT---
T ss_pred CHHHHHHHHHHHHcC-Ccc---CCChHHHHHHHHHHHHhC---CCcEEEeCCHHHHHHHHHHHc-C-C----C--CC---
Confidence 367888888887652 211 113567899999999997 368999999999999999876 1 0 0 12
Q ss_pred CCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccc
Q 002941 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (863)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~ 577 (863)
.+|++...+||+........+. . +..++....+
T Consensus 73 ---------d~Vl~~~~~~~~~~~~~~~~g~-~----------------------------~~~v~~~~~~--------- 105 (394)
T 1o69_A 73 ---------DIVLASSFTFIASVAPICYLKA-K----------------------------PVFIDCDETY--------- 105 (394)
T ss_dssp ---------CEEEEESSSCGGGTHHHHHTTC-E----------------------------EEEECBCTTS---------
T ss_pred ---------CEEEECCCccHHHHHHHHHcCC-E----------------------------EEEEEeCCCC---------
Confidence 5799999999987544332110 0 0011111000
Q ss_pred cccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeE
Q 002941 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (863)
Q Consensus 578 ~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilL 657 (863)
..| .+.+++.+.+ .++++.+|++++. .| .. ..+++|.++|++||+++
T Consensus 106 ------------~~d--------~~~l~~~i~~-----~~~~~~~v~~~~~-~G---~~----~~l~~i~~l~~~~~~~l 152 (394)
T 1o69_A 106 ------------NID--------VDLLKLAIKE-----CEKKPKALILTHL-YG---NA----AKMDEIVEICKENDIVL 152 (394)
T ss_dssp ------------SBC--------HHHHHHHHHH-----CSSCCCEEEEECG-GG---CC----CCHHHHHHHHHHTTCEE
T ss_pred ------------CcC--------HHHHHHHHhc-----ccCCceEEEEECC-CC---Ch----hhHHHHHHHHHHcCCEE
Confidence 011 2455666643 1224677887775 44 33 34999999999999999
Q ss_pred EEecccc-cccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeecc-HHHHHhhhcCCcc--------ceeecccC
Q 002941 658 IFDEVFT-GFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLAT-NAVFDSFVGDSKL--------KALLHGHS 725 (863)
Q Consensus 658 I~DEV~T-GfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~-~~i~~~l~~~~~~--------~~~~~~~T 725 (863)
|+||+|+ |+...|.... .++ ..|+.++ +|+++++ .+|+++++ +++++.+...... .....++.
T Consensus 153 i~Dea~~~g~~~~~~~~~--~~~-~~~~~s~s~~K~l~~~--~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~ 227 (394)
T 1o69_A 153 IEDAAEALGSFYKNKALG--TFG-EFGVYSYNGNKIITTS--GGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYN 227 (394)
T ss_dssp EEECTTCTTCEETTEETT--SSS-SEEEEECCTTSSSCCS--SCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCB
T ss_pred EEECcCcccceeCCcccc--ccc-CcEEEEEeCCccCCCC--CceEEEECCHHHHHHHHHHHHhccccCccccccccCcc
Confidence 9999998 6655553211 111 3688888 6888754 58999995 8888776531100 00112334
Q ss_pred CCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc--cce-EEEEEEccCC-------
Q 002941 726 YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA--LGT-LCAIELQAAG------- 795 (863)
Q Consensus 726 ~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg--~Gl-~~~iel~~~~------- 795 (863)
+..+++.++++++.++.+++ ..+++.++.+++.+.| .+.+ +. ...... .+. ++.+.+....
T Consensus 228 ~~~~~~~aa~~l~~l~~l~~--~~~~~~~~~~~l~~~L----~~~~-~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 298 (394)
T 1o69_A 228 YRLSNVLGAIGVAQMEVLEQ--RVLKKREIYEWYKEFL----GEYF-SF--LDELENSRSNRWLSTALINFDKNELNACQ 298 (394)
T ss_dssp CBCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHH----TTTE-EC--CCCCTTEECCCSSEEEEESCCGGGSCCCC
T ss_pred cCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHh----cccc-cc--cCCCCCCcceeEEEEEEecchhhcccccc
Confidence 44678888888877776532 3344444444444322 2211 11 111110 121 3455554210
Q ss_pred ------cCCCCchHHHHHHHHHHHHCCcEEEecC-------------------------CEEEEecCCCCcHHHHHHHHH
Q 002941 796 ------CNAGYGSLYAASLLKKLREDGVYMRPLG-------------------------NVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 796 ------~~~~~~~~~~~~l~~~l~e~GV~~~p~g-------------------------~~lr~~ppl~~t~eeid~~v~ 844 (863)
............+.+.|.++||.+++.. ..+++.....+|++|++++++
T Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~ 378 (394)
T 1o69_A 299 KDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISK 378 (394)
T ss_dssp EEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHH
T ss_pred ccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHH
Confidence 0000001135678899999999997641 234444445589999999999
Q ss_pred HHHHHHH
Q 002941 845 KLYQRLE 851 (863)
Q Consensus 845 ~L~~~l~ 851 (863)
+|++++.
T Consensus 379 ~l~~~~~ 385 (394)
T 1o69_A 379 LILKSIK 385 (394)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9988764
No 189
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.62 E-value=6.9e-15 Score=163.14 Aligned_cols=217 Identities=14% Similarity=0.104 Sum_probs=139.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc--CCeEEEecccccccccCCcchhhhcC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~--gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
+.+++.+.+ .++.+|+++++ ++..|.+.+ +++|.++|++| |+++|+||+|+ +|.. .+....+
T Consensus 127 ~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~~--~~~~~~~- 190 (385)
T 2bkw_A 127 ELITEKLSQ-------NSYGAVTVTHV-DTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE--EFEFDEW- 190 (385)
T ss_dssp HHHHHHHHH-------SCCSEEEEESE-ETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS--CCCTTTT-
T ss_pred HHHHHHHhc-------CCCCEEEEEcc-CCCcCeEcC----HHHHHHHHHhhCCCCEEEEECccc-cCCc--ccccccc-
Confidence 456666642 24567888887 899998876 88999999999 99999999995 4432 2222323
Q ss_pred CCCcEEEe--ccccCCCCCCceeeeccHHHHH-hhhc-----CCc-------cc----eeec--cc-CCCccHHHHHHHH
Q 002941 680 CVPDIACY--GKLLTGGVIPLAATLATNAVFD-SFVG-----DSK-------LK----ALLH--GH-SYSAHALGCAAAA 737 (863)
Q Consensus 680 v~PDivt~--sKgLggG~~Pigav~~~~~i~~-~l~~-----~~~-------~~----~~~~--~~-T~~~~pla~AAal 737 (863)
.+|++++ +|+++|+ ..+|++++++++++ .+.. ... .. .+.. +. .++.++.+++++.
T Consensus 191 -~~d~~~~s~~K~~~~~-~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 268 (385)
T 2bkw_A 191 -GVDFALTASQKAIGAP-AGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLD 268 (385)
T ss_dssp -TCSEEEEESSSTTCCC-SCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHH
T ss_pred -CceEEEecCccccccC-CcceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHH
Confidence 4688765 6999875 46799999998877 5420 000 00 0001 11 2357888888888
Q ss_pred HHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec------ccceEEEEEEccCCcCCCCchHHHHHHHHH
Q 002941 738 KSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV------ALGTLCAIELQAAGCNAGYGSLYAASLLKK 811 (863)
Q Consensus 738 AaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr------g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~ 811 (863)
++|+.+++.+ .+++.+..+.+++.+.+.+. ++.+ +.-+. ..+.++.+.+.+ ...+.+.
T Consensus 269 ~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~---~~~g-~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 332 (385)
T 2bkw_A 269 VALKEILEEG-LHKRWDLHREMSDWFKDSLV---NGLQ-LTSVSRYPSNMSAHGLTAVYVAD-----------PPDVIAF 332 (385)
T ss_dssp HHHHHHHHHC-HHHHHHHHHHHHHHHHHHHH---TTTC-CEESSCSSSTTBCSSCEEEECSC-----------HHHHHHH
T ss_pred HHHHHHHHcc-HHHHHHHHHHHHHHHHHHHH---HhcC-ceecccCcccccCCceEEEecCC-----------HHHHHHH
Confidence 9998875432 22333444444444433320 3332 21111 246777777631 4568888
Q ss_pred HHHCCcEEEec------CCEEEEe-cC---CCCcHHHHHHHHHHHHHHHHH
Q 002941 812 LREDGVYMRPL------GNVIYLM-CG---PCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 812 l~e~GV~~~p~------g~~lr~~-pp---l~~t~eeid~~v~~L~~~l~~ 852 (863)
|.++||.+++. .+.+|+. .+ ..++++++++++++|++++++
T Consensus 333 l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 333 LKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp HHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred HHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 89999999873 3688987 33 247999999999999887654
No 190
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.61 E-value=9.8e-15 Score=163.33 Aligned_cols=213 Identities=8% Similarity=0.011 Sum_probs=131.1
Q ss_pred cEEE-EEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCCCC
Q 002941 619 CIGA-LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGV 695 (863)
Q Consensus 619 ~iAA-vIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLggG~ 695 (863)
++.+ |+++.. ++.+|. +...+++|.++|++||++||+||++..+ ..|...........+|+++ ++|.|+|
T Consensus 140 ~~~~~v~~~~p-~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~di~~~S~sK~l~g-- 212 (374)
T 2aeu_A 140 KDTLVIITGST-MDLKVI---ELENFKKVINTAKNKEAIVFVDDASGAR-VRLLFNQPPALKLGADLVVTSTDKLMEG-- 212 (374)
T ss_dssp TTEEEEEECBC-TTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHH-HHHHTTCCCHHHHTCSEEEEETTSSSSS--
T ss_pred CccEEEEEccC-CCCCCC---CcccHHHHHHHHHHcCCEEEEECCcccc-cccccccCCccccCCcEEEecCcccccC--
Confidence 4677 888886 888885 5677999999999999999999988433 2111110001112468874 7999875
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHH----HHHHHHHHHHHH
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRIL----RELWDLELIQQI 771 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l----~~~l~~~l~~~~ 771 (863)
+.+|++++++++++.+... ...++.+.++++++++.++|+.+. .+..++..++.+.+ .+.+. +.+
T Consensus 213 ~~~G~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~l~----~~L 281 (374)
T 2aeu_A 213 PRGGLLAGKKELVDKIYIE------GTKFGLEAQPPLLAGIYRALKNFN-LERIRKAFERAKNFDLSKIEKLN----KEL 281 (374)
T ss_dssp CSCEEEEEEHHHHHHHHHH------HHTTTCBCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCHHHHHHH----HHH
T ss_pred cceEEEEECHHHHHHHHHh------hccccCCCCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHH----Hhh
Confidence 5899999999999887641 112233578999999999999763 22334445555555 34332 333
Q ss_pred hcC---CCee-EecccceEEEEEEccCCcCCCCchHHHHHHHHH-HHHCCcEEEec------CCEEEEecCC-CCcHHHH
Q 002941 772 SSH---RTVQ-RVVALGTLCAIELQAAGCNAGYGSLYAASLLKK-LREDGVYMRPL------GNVIYLMCGP-CSSPEVC 839 (863)
Q Consensus 772 ~~~---p~v~-~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~-l~e~GV~~~p~------g~~lr~~ppl-~~t~eei 839 (863)
... +.+. ...+.|.++...-.... .......+++.. +.++||++.|. ++.+|+.++. ..+++++
T Consensus 282 ~~~~~~~g~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l 357 (374)
T 2aeu_A 282 KAIDDNINIVYERTPTGFVIKRVYKDDT----INIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDD 357 (374)
T ss_dssp TTTCTTEEEEEEECSSEEEEEEEESSHH----HHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCH
T ss_pred hhhhhccCcceeeCCceEEEEeeccccc----ccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHH
Confidence 332 1222 34566766554311100 000011235544 45789999864 2479998653 2234458
Q ss_pred HHHHHHHHHHHHHH
Q 002941 840 SQLLLKLYQRLEEF 853 (863)
Q Consensus 840 d~~v~~L~~~l~~l 853 (863)
++++++|+++++++
T Consensus 358 ~~l~~~l~~~l~~~ 371 (374)
T 2aeu_A 358 NYIIKAIVESIKMA 371 (374)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887765
No 191
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.60 E-value=1.4e-13 Score=155.51 Aligned_cols=286 Identities=10% Similarity=0.036 Sum_probs=181.8
Q ss_pred CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCc
Q 002941 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (863)
Q Consensus 441 ~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t 520 (863)
.++...+|.++|+++.+. +.+++++||++|+..+++..++ .| ..||+....|++..
T Consensus 60 ~~~~~~~l~~~ia~~~g~---~~~i~~~~g~~ai~~~~~~l~~---------~g------------d~Vl~~~~~y~~~~ 115 (404)
T 1e5e_A 60 GNPTVSNLEGKIAFLEKT---EACVATSSGMGAIAATVLTILK---------AG------------DHLISDECLYGCTH 115 (404)
T ss_dssp CCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHCC---------TT------------CEEEEESCCCHHHH
T ss_pred cChHHHHHHHHHHHHhCC---CcEEEeCChHHHHHHHHHHHhC---------CC------------CEEEEeCCCchhHH
Confidence 457778999999999873 5889999999999999986521 12 56888888888743
Q ss_pred cc---cceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHH
Q 002941 521 LG---AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLA 597 (863)
Q Consensus 521 ~g---als~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 597 (863)
.. .+...| ...+.+|. .|
T Consensus 116 ~~~~~~~~~~g------------------------------~~~~~v~~------------------------~d----- 136 (404)
T 1e5e_A 116 ALFEHALTKFG------------------------------IQVDFINT------------------------AI----- 136 (404)
T ss_dssp HHHHTHHHHTT------------------------------CEEEEECT------------------------TS-----
T ss_pred HHHHHHHHHcC------------------------------CEEEEECC------------------------CC-----
Confidence 21 111100 00011110 01
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHH-cCCeEEEecccccccccCCcchhh
Q 002941 598 SIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN-RKIPVIFDEVFTGFWRLGVETTAD 676 (863)
Q Consensus 598 ~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~-~gilLI~DEV~TGfGRtG~~~a~e 676 (863)
.+.+++.+. +++.+|+++.. ++..|.+.+ +++|.++|++ ||+++|+||+|+.+.. ...+
T Consensus 137 ---~~~l~~~i~--------~~t~~v~l~~p-~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~~-~~~~--- 196 (404)
T 1e5e_A 137 ---PGEVKKHMK--------PNTKIVYFETP-ANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPMI-TNPV--- 196 (404)
T ss_dssp ---TTHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTTT-CCGG---
T ss_pred ---HHHHHHhcC--------CCCcEEEEECC-CCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhhh-CCcc---
Confidence 123445542 25778888886 899998775 9999999999 9999999999986632 2222
Q ss_pred hcCCCCcEE--EeccccCCCCCCc-eeeeccHHHHH-hhhcCCccceeeccc-CCCccHHHHHHHHHHHHHhcChhhHHh
Q 002941 677 LLGCVPDIA--CYGKLLTGGVIPL-AATLATNAVFD-SFVGDSKLKALLHGH-SYSAHALGCAAAAKSIKWFKDPQTNHN 751 (863)
Q Consensus 677 ~~gv~PDiv--t~sKgLggG~~Pi-gav~~~~~i~~-~l~~~~~~~~~~~~~-T~~~~pla~AAalAaL~~l~~~~l~~~ 751 (863)
.+| .|++ +++|.+++.-.++ |++++++++++ .+... .... +...+|++++++.++|+.+. ...++
T Consensus 197 ~~~--~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~------~~~~~g~~~~~~~~~~~~~~l~~~~--~~~~~ 266 (404)
T 1e5e_A 197 DFG--VDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVG------IKDITGSVISPHDAWLITRGLSTLN--IRMKA 266 (404)
T ss_dssp GGT--CSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTC------CCCCCCCCCCHHHHHHHHHHHTTHH--HHHHH
T ss_pred ccC--CEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHH------HHhCCCCCCCHHHHHHHHHhHhHHH--HHHHH
Confidence 233 5766 6799998643787 99999999888 77642 1222 45678999999888887532 22344
Q ss_pred HHHHHHHHHHHHHHHH------HHHHhcCCCee----EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe
Q 002941 752 IIPERRILRELWDLEL------IQQISSHRTVQ----RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP 821 (863)
Q Consensus 752 l~~~~~~l~~~l~~~l------~~~~~~~p~v~----~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p 821 (863)
..++.+.+.+++.+.- ...+.++|.+. ..+|.|.|+.+++... ...+.+.+.+.||+...
T Consensus 267 ~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~l~~~~i~~~~ 336 (404)
T 1e5e_A 267 ESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSG----------FEGAKKLLDNLKLITLA 336 (404)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTH----------HHHHHHHHHTCSSSEES
T ss_pred HHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCC----------HHHHHHHHHhCCCceec
Confidence 4555555544332110 00001111111 1245699999987531 22344556677886543
Q ss_pred c-------------------------------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 822 L-------------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 822 ~-------------------------------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
. .+.+|+++.. |+++++++.|+++++.+
T Consensus 337 ~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~~ 395 (404)
T 1e5e_A 337 VSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDAL 395 (404)
T ss_dssp SCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHHH
T ss_pred cCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHHH
Confidence 1 2689998665 88999999998888653
No 192
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.60 E-value=4.5e-14 Score=154.99 Aligned_cols=316 Identities=10% Similarity=-0.033 Sum_probs=192.0
Q ss_pred CcHHHHHHHHHHHHhcccccCCCC--CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPEN--VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~--~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tg 494 (863)
-+|++.+++.+++..........+ ..+...++.++|+++++....+.++|++||++|++.+++... +
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~-----------~ 83 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV-----------E 83 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC-----------S
T ss_pred CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc-----------C
Confidence 368999999888765321110111 114456788888888764213579999999999999998651 1
Q ss_pred ccCCCccccccccEEEEecCCCccCccccc-eecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhc
Q 002941 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (863)
Q Consensus 495 r~~~~~~~~~~r~~II~~~~sYHG~t~gal-s~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~ 573 (863)
.+++.....+++...... ...|. .+..++.+..+
T Consensus 84 ------------~~~i~~~~~~~~~~~~~~~~~~g~----------------------------~~~~v~~~~~~----- 118 (362)
T 3ffr_A 84 ------------KKSFHCVNGSFSKRFYEFAGELGR----------------------------EAYKEEAAFGK----- 118 (362)
T ss_dssp ------------SEEEEEECSHHHHHHHHHHHHTTC----------------------------EEEEEECCTTC-----
T ss_pred ------------CcEEEEcCcHHHHHHHHHHHHhCC----------------------------CeEEEecCCCC-----
Confidence 256666666666321111 11000 00111111000
Q ss_pred cccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc
Q 002941 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (863)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~ 653 (863)
.-|. +.++ + ..++.+|+++.. ++..|.+.+ +++|.++|++|
T Consensus 119 ----------------~~d~--------~~l~--~--------~~~~~~v~~~~~-~nptG~~~~----l~~i~~la~~~ 159 (362)
T 3ffr_A 119 ----------------GFYP--------ADIT--V--------PADAEIICLTHN-ETSSGVSMP----VEDINTFRDKN 159 (362)
T ss_dssp ----------------CCCG--------GGCC--C--------CTTCCEEEEESE-ETTTTEECC----HHHHTTSGGGS
T ss_pred ----------------CCCH--------HHHh--c--------cCCccEEEEEcC-CCCcceeCC----HHHHHHHHHhC
Confidence 0010 1111 1 234567777776 899998876 89999999999
Q ss_pred -CCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHHhhhcCCc---cceee------
Q 002941 654 -KIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDSK---LKALL------ 721 (863)
Q Consensus 654 -gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~~l~~~~~---~~~~~------ 721 (863)
|+++|+||+++ +|-.. .... ..|++++ +|.++++ ..+|++++++++++.+..... ...+.
T Consensus 160 p~~~li~D~a~~-~~~~~--~~~~----~~d~~~~s~~K~~~~~-~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~ 231 (362)
T 3ffr_A 160 KDALIFVDAVSS-LPYPK--FDWT----KIDSVFFSVQKCFGLP-AGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSM 231 (362)
T ss_dssp TTSEEEEECTTT-TTSSC--CCTT----SCSEEEEETTSTTCCC-SCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHH
T ss_pred CCCEEEEecccc-cCCcc--cChh----HCcEEEEecccccCCC-CceEEEEECHHHHHHhhhccccCCCCcccccHHHH
Confidence 99999999985 33211 1111 1788765 5999854 346888899998876653100 00000
Q ss_pred -----ccc-CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec-----ccceEEEEE
Q 002941 722 -----HGH-SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV-----ALGTLCAIE 790 (863)
Q Consensus 722 -----~~~-T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr-----g~Gl~~~ie 790 (863)
.+. .++.++.+++++.++++.+.+.+ .++..+..+.+++.+. +.+++.|.+.-+. ..+.++.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~~~~l~----~~L~~~~g~~~~~~~~~~~~~~~~~~~ 306 (362)
T 3ffr_A 232 LEKARVNQTPETPNAMNIFLLGKVTGDMLQIS-ADGIRKQTEEKAALIN----TYIESSKVFSFGVEDAKLRSMTTIVAN 306 (362)
T ss_dssp HHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHH----HHHHHCSSEEESSSCGGGBCSSEEEEE
T ss_pred HHHhhcCCCCCCchHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHHHH----HHHHHccCceeccCChhhcCCceEEEe
Confidence 011 34567778888888888775443 3444444444555443 3344555443222 235566677
Q ss_pred EccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 791 LQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 791 l~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
+.. . ..++.+.|.++||.+++. ++.+|+.+...++++++++++++|++.+
T Consensus 307 ~~~-~---------~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 307 TTM-L---------PGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp ESS-C---------HHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cCC-C---------HHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 654 2 567899999999999863 3789999888889999999999998753
No 193
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.59 E-value=2.6e-13 Score=151.84 Aligned_cols=325 Identities=9% Similarity=0.042 Sum_probs=190.4
Q ss_pred ccccccCCCC-CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHH
Q 002941 407 SWWTQGPDAT-LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF 485 (863)
Q Consensus 407 g~~~~~lGh~-~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~ 485 (863)
|+|+.+++.. -+|++.+|+.+++++..+ +..+...++.++|+++++. +.++|++||++|++.|++.+ + +
T Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~la~~~~~---~~~i~~~sGt~a~~~al~~~-~-~ 71 (390)
T 3b8x_A 2 HMINYPLASSTWDDLEYKAIQSVLDSKMF-----TMGEYVKQYETQFAKTFGS---KYAVMVSSGSTANLLMIAAL-F-F 71 (390)
T ss_dssp ---CBCSCCCCCCHHHHHHHHHHHHHTCC-----SSCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHT-T-S
T ss_pred CceeccCCCCCCCHHHHHHHHHHHHcCCC-----CCChHHHHHHHHHHHHHCC---CcEEEECCHHHHHHHHHHHH-H-h
Confidence 3454444431 368999999999887432 2467888999999999984 57899999999999999876 2 1
Q ss_pred HhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCc
Q 002941 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (863)
Q Consensus 486 ~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P 565 (863)
+...+... ..+||+...+||+........ |.. +..++..
T Consensus 72 ~~~~~~~~------------g~~Vi~~~~~~~~~~~~~~~~-g~~----------------------------~~~~~~~ 110 (390)
T 3b8x_A 72 TKKPRLKK------------GDEIIVPAVSWSTTYYPLQQY-GLR----------------------------VKFVDID 110 (390)
T ss_dssp SSSCSCCT------------TCEEEEESSSCHHHHHHHHHT-TCE----------------------------EEEECBC
T ss_pred hhhcCCCC------------cCEEEECCCCcHHHHHHHHHc-CCE----------------------------EEEEecC
Confidence 11111101 257999999999876543321 100 0001110
Q ss_pred chhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHH
Q 002941 566 EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (863)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~ 645 (863)
.. .+ .-| .+.+++.+. +++.+|++... .| .. ..+++
T Consensus 111 ~~------------------~~--~~d--------~~~l~~~i~--------~~~~~v~~~~~-~g---~~----~~~~~ 146 (390)
T 3b8x_A 111 IN------------------TL--NID--------IESLKEAVT--------DSTKAILTVNL-LG---NP----NNFDE 146 (390)
T ss_dssp TT------------------TC--SBC--------HHHHHHHCC--------TTEEEEEEECG-GG---CC----CCHHH
T ss_pred cc------------------cc--CcC--------HHHHHHHhC--------cCCeEEEEECC-cc---Ch----hhHHH
Confidence 00 00 001 244555553 24556665332 22 22 23999
Q ss_pred HHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCC--CceeeeccH-HHHHhhh---cCC--cc
Q 002941 646 LVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVI--PLAATLATN-AVFDSFV---GDS--KL 717 (863)
Q Consensus 646 Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~--Pigav~~~~-~i~~~l~---~~~--~~ 717 (863)
|.++|++||++||+||+|+ +|.. +....+|+.+|+.+++|..+.++. ..|++++++ ++.+.+. ..+ +.
T Consensus 147 i~~l~~~~~~~li~D~a~~-~g~~---~~~~~~g~~~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~ 222 (390)
T 3b8x_A 147 INKIIGGRDIILLEDNCES-MGAT---FNNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIYHILLCIRAHGWTRN 222 (390)
T ss_dssp HHHHHTTSCCEEEEECTTC-TTCE---ETTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTBSTT
T ss_pred HHHHHHHcCCEEEEECcCc-ccCE---ECCcccccccceEEEEccCCCCCccCCceEEEeCCHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999996 3222 223467788999998875443211 246677665 6655432 111 00
Q ss_pred -----------------ce---eecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 002941 718 -----------------KA---LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (863)
Q Consensus 718 -----------------~~---~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v 777 (863)
.. ...++++..+++.++++++.|+.++ ++.++..++.+++. +.+.+.|.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~--------~~L~~~~~~ 292 (390)
T 3b8x_A 223 LPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLP--RFISVRRKNAEYFL--------DKFKDHPYL 292 (390)
T ss_dssp SCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--------HHHTTCSSE
T ss_pred ccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--------HHhcCCCCc
Confidence 00 0023455688999999999887664 23334333333333 234445543
Q ss_pred eEe----cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------C-----------------------
Q 002941 778 QRV----VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------G----------------------- 823 (863)
Q Consensus 778 ~~v----rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g----------------------- 823 (863)
.-. +....++.+.+.... . .....+.+.|.++||.+++. .
T Consensus 293 ~~~~~~~~~~~~~~~i~~~~~~---~---~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (390)
T 3b8x_A 293 DVQQETGESSWFGFSFIIKKDS---G---VIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDK 366 (390)
T ss_dssp EECCCCSBCCCCEEEEEECTTS---C---CCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHH
T ss_pred ccCCCCCCcccEEEEEEecCcC---c---ccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhc
Confidence 211 112233555554210 0 01457888899999988741 0
Q ss_pred CEEEEecCCCCcHHHHHHHHHHH
Q 002941 824 NVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 824 ~~lr~~ppl~~t~eeid~~v~~L 846 (863)
..+|+.....+|++|+++++++|
T Consensus 367 ~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 367 NGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp HEEEEECCSSCCHHHHHHHHHHT
T ss_pred CEEEeeCCCCCCHHHHHHHHHhh
Confidence 15788877889999999999876
No 194
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.58 E-value=5.7e-14 Score=161.06 Aligned_cols=285 Identities=14% Similarity=0.094 Sum_probs=178.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
+.++...+|.++|+++.+. +..++++||++|+..+++..++ .| ..||+....|++.
T Consensus 111 ~~~~~~~~l~~~lA~l~g~---~~~v~~~sG~~Ai~~al~~l~~---------~G------------d~Vi~~~~~y~~~ 166 (445)
T 1qgn_A 111 YGNPTTVVLEEKISALEGA---ESTLLMASGMCASTVMLLALVP---------AG------------GHIVTTTDCYRKT 166 (445)
T ss_dssp GCCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHHSC---------SS------------CEEEEETTSCHHH
T ss_pred CCChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHhC---------CC------------CEEEEcCCCchhH
Confidence 4578888999999999874 4778888999999999985521 12 5789998888773
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
...+...- . ..+ +....+|. +|
T Consensus 167 -~~~~~~~~----~---------~~G-------------~~v~~v~~------------------------~d------- 188 (445)
T 1qgn_A 167 -RIFIETIL----P---------KMG-------------ITATVIDP------------------------AD------- 188 (445)
T ss_dssp -HHHHHHTG----G---------GGT-------------CEEEEECS------------------------SC-------
T ss_pred -HHHHHHHH----H---------HcC-------------CEEEEeCC------------------------CC-------
Confidence 32211000 0 000 00001110 11
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.+.. +.+.+|++|++ ++..|.+.+ +++|.++|++||++||+||+|+.. ... ..+.
T Consensus 189 -~~~l~~ai~~-------~tv~lV~le~p-~NptG~v~d----l~~I~~la~~~g~~livD~a~~~~-~~~-----~~~~ 249 (445)
T 1qgn_A 189 -VGALELALNQ-------KKVNLFFTESP-TNPFLRCVD----IELVSKLCHEKGALVCIDGTFATP-LNQ-----KALA 249 (445)
T ss_dssp -HHHHHHHHHH-------SCEEEEEEESS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCT-TTC-----CTTT
T ss_pred -HHHHHHHhcc-------CCCCEEEEeCC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc-ccC-----Cccc
Confidence 2456666642 34588999997 899998776 899999999999999999999522 211 2234
Q ss_pred CCCcEEE--eccccCCC-CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHH
Q 002941 680 CVPDIAC--YGKLLTGG-VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (863)
Q Consensus 680 v~PDivt--~sKgLggG-~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~ 756 (863)
..+|+++ ++|.++|+ ..++|++++++++++.+... ........+|..++.++..|+.+.. ..++..++.
T Consensus 250 ~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~------~~~~g~~~~~~~a~~~~~~l~~l~~--r~~~~~~~a 321 (445)
T 1qgn_A 250 LGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL------HHILGGALNPNAAYLIIRGMKTLHL--RVQQQNSTA 321 (445)
T ss_dssp TTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH------HHHHCCCCCHHHHHHHHHHGGGHHH--HHHHHHHHH
T ss_pred cCCEEEEECCcccccccccceEEEEEECHHHHHHHHHH------HHHhCCCCCHHHHHHHHHhHHHHHH--HHHHHHHHH
Confidence 5689987 68999864 24799999999998877531 1111223478877777777765521 123333334
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcE
Q 002941 757 RILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVY 818 (863)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~ 818 (863)
+++.+ .+.++|.|..+ +|.|.++.+++.... ..+..+...|...|+.
T Consensus 322 ~~l~~--------~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~-------~~~~~~l~~l~~~~i~ 386 (445)
T 1qgn_A 322 LRMAE--------ILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL-------LTTAKFVDALKIPYIA 386 (445)
T ss_dssp HHHHH--------HHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH-------HHHHHHHHHCSSSEEC
T ss_pred HHHHH--------HHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCH-------HHHHHHHHhCCCceEe
Confidence 44443 34455554332 357899999996431 1244555555422221
Q ss_pred E----------Ee---------------c---CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 819 M----------RP---------------L---GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 819 ~----------~p---------------~---g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
+ .| . .+.+|++.- .||+|.+++.|+++++.
T Consensus 387 ~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 387 PSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALDS 444 (445)
T ss_dssp SCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred ccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHhh
Confidence 1 11 1 268888643 57899999999998864
No 195
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.58 E-value=2.8e-14 Score=163.45 Aligned_cols=344 Identities=10% Similarity=0.040 Sum_probs=188.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc----cccCCCCCC-hHHHHHHHHHHhhc-CCCC----CCeEEE--e
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG----HVMFPENVY-EPALECAELLLQGV-GKGW----ASRAYF--S 467 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~----~~~~~~~~~-~~~~eLae~L~~~~-p~~~----~~~v~f--~ 467 (863)
..+|+..|... .++++|.+.+++.+++.++. ... ..|.. .-..+|.+.+++++ +... .++++| +
T Consensus 50 ~~i~l~~g~~~---d~~~~~~v~~av~~a~~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t 125 (448)
T 3meb_A 50 KKVNLGVGAYR---DESGKPWILPAVKEAEAIISSDLSKYN-KEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQS 125 (448)
T ss_dssp TCEEESSCCCC---CTTSCCCCCHHHHHHHHHHHHCTTTTC-CSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CeEEeeccccc---CCCCCEechHHHHHHHHHHhhcccCCC-CCCCCCcchHHHHHHHHHHhcCCCccccCcCcEEEEEC
Confidence 35776664432 22245667777777744432 111 12222 22345666666655 4210 158999 9
Q ss_pred CChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccce---ecCCCCCCCCCcCCcccCC
Q 002941 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME---AQAPSPYTGFLQQPWYSGR 544 (863)
Q Consensus 468 ~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals---~t~~~~~~~~~~~~~~~~~ 544 (863)
++|++|++.++.+. .... .| .+|++...+|++....... ..|..
T Consensus 126 ~ggt~al~l~~~~~-~~~~------~g------------d~Vlv~~p~~~~~~~~~~~~~~~~G~~-------------- 172 (448)
T 3meb_A 126 LSGTGSLHIGFEFL-HLWM------PK------------AEFYMPSTTWPNHYGIYDKVFNKLKVP-------------- 172 (448)
T ss_dssp SHHHHHHHHHHHHH-HHHC------TT------------CCEEEESSCCTHHHHHHHHHHCTTTSC--------------
T ss_pred CcHHHHHHHHHHHH-HHhC------CC------------CEEEECCCCCHhHHHHHHhhHHhCCCe--------------
Confidence 99999999977655 2221 12 4689988888765332220 11100
Q ss_pred CcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 002941 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI 624 (863)
Q Consensus 545 ~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvI 624 (863)
+..+++.+.. ..+ .-| .+.+++.+.+ .....+..++
T Consensus 173 --------------v~~~~~~~~~----------------~~~--~~d--------~e~l~~~l~~----~~~~~~~v~~ 208 (448)
T 3meb_A 173 --------------YKEYTYLRKD----------------GEL--EID--------FSNTKKDIQS----APEKSIFLFH 208 (448)
T ss_dssp --------------CEEECCBCTT----------------SCS--SBC--------HHHHHHHHHH----SCTTCEEEEE
T ss_pred --------------EEEEeccccc----------------cCC--CcC--------HHHHHHHHHh----CCCCcEEEEe
Confidence 0011110000 000 001 2455666653 1122344444
Q ss_pred EccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC---cchhhhc-CCCCc---EEEeccccC-CCCC
Q 002941 625 IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL-GCVPD---IACYGKLLT-GGVI 696 (863)
Q Consensus 625 vEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~---~~a~e~~-gv~PD---ivt~sKgLg-gG~~ 696 (863)
..| ++..|.. ++.+.+++|.++|++||+++|+||++.+|+..+. .+....+ +..++ +.++||.++ .| +
T Consensus 209 ~~p--~NPtG~~-~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~ 284 (448)
T 3meb_A 209 ACA--HNPSGID-FTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYG-E 284 (448)
T ss_dssp SSS--CTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGG-G
T ss_pred CCC--CCCCCcC-CCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCcc-c
Confidence 556 7888865 5788899999999999999999999999976552 2333332 33456 347899987 57 8
Q ss_pred Cceee--ec---------cH----HHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc-Chhh---HHhHHHHHH
Q 002941 697 PLAAT--LA---------TN----AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK-DPQT---NHNIIPERR 757 (863)
Q Consensus 697 Pigav--~~---------~~----~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~-~~~l---~~~l~~~~~ 757 (863)
++|++ ++ ++ ++++.+.. .....+...+.++++++.++|+..+ ..+| .++++++.+
T Consensus 285 RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~ 358 (448)
T 3meb_A 285 RIGCLHVVHAGVEGSVEKNKALSAAMVSGMTL------QIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIH 358 (448)
T ss_dssp CCEEEEEECCCCSSSHHHHHHHHHHHHHHHHH------HHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred cceeeeeeeccccccccCCHHHHHHHHHHHHH------HHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 99997 55 45 55555442 1122334556677777777665211 0122 334444444
Q ss_pred HHHHHHHHHHHHHHhcCCC------eeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHH-HHCCcEEEecCCEEEEe
Q 002941 758 ILRELWDLELIQQISSHRT------VQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKL-REDGVYMRPLGNVIYLM 829 (863)
Q Consensus 758 ~l~~~l~~~l~~~~~~~p~------v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l-~e~GV~~~p~g~~lr~~ 829 (863)
.+++.+.+.+.+. ..+. +..+... |++..+.+. .+++..+ .++||++.|+.. |+.
T Consensus 359 ~~r~~l~~~L~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~-------------~~~~~~ll~~~gV~v~~G~g--Ris 421 (448)
T 3meb_A 359 RMRSLLHASLAKR--KTPGPGSKGTWDHILTAIGMFTFTGLT-------------PEHVDYLKEKWSIYLVKAGG--RMS 421 (448)
T ss_dssp HHHHHHHHHHHHT--TCCCSTTTCCCTHHHHCCSSEEECCCC-------------HHHHHHHHHHHCEEECSGGG--EEE
T ss_pred HHHHHHHHHHHhh--CCCCcCcccccceeCCCceEEEecCCC-------------HHHHHHHHHhCCEEEeCCCc--EEE
Confidence 5555444433221 1122 2222233 333333221 1344444 567999998433 555
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHH
Q 002941 830 CGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 830 ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
. ..+++++|++++++|.+++++
T Consensus 422 ~-a~~~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 422 M-CGLTESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp G-GGCCTTTHHHHHHHHHHHHHH
T ss_pred E-ecCCHHHHHHHHHHHHHHHHh
Confidence 3 245778899999999998874
No 196
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.57 E-value=3.4e-14 Score=160.02 Aligned_cols=335 Identities=12% Similarity=0.011 Sum_probs=188.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCC-ChHHHHHHHHHHhhc-CCCC----CCeEEE--eCChh
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-YEPALECAELLLQGV-GKGW----ASRAYF--SDNGS 471 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~-~~~~~eLae~L~~~~-p~~~----~~~v~f--~~SGS 471 (863)
..+|+.+|. +++...+|.+.+++.++.....+ .+. ..-..+|.+.+++++ +... .+++.+ +++|+
T Consensus 42 ~~i~l~~g~---~~d~~~~~~v~~a~~~a~~~~~~----~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ 114 (409)
T 4eu1_A 42 RKVNLSIGV---YRDDADQPFVLECVKQATLGTNM----DYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGT 114 (409)
T ss_dssp SCEECCCSS---CCCTTSCCCCCHHHHTCCCCSCC----CCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHH
T ss_pred CceeeeeeE---EECCCCCEeecHHHHhcCccccc----cCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccch
Confidence 567776543 22333568888888877222111 121 122346666666654 2110 145644 99999
Q ss_pred hHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCC
Q 002941 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (863)
Q Consensus 472 eAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p 551 (863)
+|++.+..++ +.+. ++ ..+|++...+|++........ |..
T Consensus 115 ga~~~~~~~~-~~~~-------~~----------gd~Vlv~~p~y~~~~~~~~~~-g~~--------------------- 154 (409)
T 4eu1_A 115 GALRIGGDLL-NRFV-------AN----------CNRIYGPDVGYPNHESIFAKA-GME--------------------- 154 (409)
T ss_dssp HHHHHHHHHG-GGTS-------SS----------CCEEEEESSCCTHHHHHHHHT-TCE---------------------
T ss_pred HHHHHHHHHH-HHhc-------CC----------CCEEEEeCCCcHhHHHHHHHc-CCe---------------------
Confidence 9999988766 3221 10 157999999887764332221 100
Q ss_pred cccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE-Eccccc
Q 002941 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI-IEPVVH 630 (863)
Q Consensus 552 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvI-vEPViq 630 (863)
+..++..+.. .+ ..| .+.+++.+++ .+....+++ ..| +
T Consensus 155 -------~~~~~~~~~~-----------------~~--~~d--------~~~l~~~l~~-----~~~~~~~i~~~~p--~ 193 (409)
T 4eu1_A 155 -------LTPYSYYDPA-----------------TK--GLN--------LAGMLECLDK-----APEGSVILVHACA--H 193 (409)
T ss_dssp -------EEEECCEETT-----------------TT--EEC--------HHHHHHHHHH-----SCTTCEEEEESSS--C
T ss_pred -------EEEEEeecCc-----------------CC--cCc--------HHHHHHHHHh-----CCCCcEEEEECCC--C
Confidence 0111110000 00 011 2456666653 123344454 566 7
Q ss_pred cCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC---cchhhh-cCCCCcEE---EeccccC-CCCCCceee-
Q 002941 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADL-LGCVPDIA---CYGKLLT-GGVIPLAAT- 701 (863)
Q Consensus 631 g~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~---~~a~e~-~gv~PDiv---t~sKgLg-gG~~Pigav- 701 (863)
+..|.+ .+.+.+++|.++|++||+++|+||++.+|+..+. ...... .+..++++ +|||.++ .| +++|++
T Consensus 194 NPtG~~-~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~riG~~~ 271 (409)
T 4eu1_A 194 NPTGVD-PTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYG-HRCGALH 271 (409)
T ss_dssp TTTCCC-CCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGG-GCCEEEE
T ss_pred CCCCCC-CCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCcc-CCceEEE
Confidence 888854 5778899999999999999999999999876652 233332 35566755 7899997 67 899995
Q ss_pred --eccHH----HHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc-Chhh---HHhHHHHHHHHHHHHHHHHHHHH
Q 002941 702 --LATNA----VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK-DPQT---NHNIIPERRILRELWDLELIQQI 771 (863)
Q Consensus 702 --~~~~~----i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~-~~~l---~~~l~~~~~~l~~~l~~~l~~~~ 771 (863)
+.+++ +++.+.. .....+++.++++++++.++|+... .++| .+++++..+..++.+.+. +
T Consensus 272 ~v~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----L 341 (409)
T 4eu1_A 272 ISTASAEEAKRLVSQLAL------LIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSE----L 341 (409)
T ss_dssp EECSSHHHHHHHHHHHHH------HHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
T ss_pred EEeCCHHHHHHHHHHHHH------HHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 67777 5554432 1123456667888888888877321 0112 233333344444444333 3
Q ss_pred hcCCC---eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHH
Q 002941 772 SSHRT---VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLY 847 (863)
Q Consensus 772 ~~~p~---v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~ 847 (863)
.+.+. +..+...|.++.+ .+.. ..++..++ ++||++.|.+ |+.. ..++++++++++++|.
T Consensus 342 ~~~g~~~~~~~~~~~~~~~~~--~~~~----------~~~~~~ll~~~gv~v~p~~---Ri~~-~~~~~~~i~~~~~~l~ 405 (409)
T 4eu1_A 342 KACGSVHDWSHIERQVGMMAY--TGLT----------REQVELLRSEYHIYMTLNG---RAAV-SGLNSTNVEYVSQAIH 405 (409)
T ss_dssp HHTTCCSCCHHHHHSCSSEEE--CCCC----------HHHHHHHHHHHCEECCTTC---EEEG-GGCCTTTHHHHHHHHH
T ss_pred HhcCCCCCcceecCCceEEEE--eCCC----------HHHHHHHHHcCCEEEcCCC---EEEE-EecCHhhHHHHHHHHH
Confidence 33321 2222333433333 1111 12345555 6799999864 4543 3567788999999998
Q ss_pred HHH
Q 002941 848 QRL 850 (863)
Q Consensus 848 ~~l 850 (863)
+++
T Consensus 406 ~~l 408 (409)
T 4eu1_A 406 NVT 408 (409)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 197
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.57 E-value=1.4e-14 Score=167.09 Aligned_cols=288 Identities=11% Similarity=0.072 Sum_probs=176.3
Q ss_pred CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCc
Q 002941 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (863)
Q Consensus 441 ~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t 520 (863)
.++...+++++|+++.+ .+.+++++||++|+..+++++ + .| .+||+....||+..
T Consensus 131 g~~~~~~l~~~la~~~g---~~~~i~~~sGt~al~~~l~~~-~---------~G------------d~Vi~~~~~y~~~~ 185 (464)
T 1ibj_A 131 GNPTRDALESLLAKLDK---ADRAFCFTSGMAALSAVTHLI-K---------NG------------EEIVAGDDVYGGSD 185 (464)
T ss_dssp CCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHTTS-C---------TT------------CEEEEESSCCHHHH
T ss_pred CCHHHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHh-C---------CC------------CEEEEECCCchhHH
Confidence 45567788888988887 358888999999998777532 1 12 57999999998752
Q ss_pred cccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHH
Q 002941 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (863)
Q Consensus 521 ~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 600 (863)
. .+... .+ .. |...+.+|. .|
T Consensus 186 ~-~~~~~----~~---------~~-------------G~~v~~v~~------------------------~d-------- 206 (464)
T 1ibj_A 186 R-LLSQV----VP---------RS-------------GVVVKRVNT------------------------TK-------- 206 (464)
T ss_dssp H-HHHHT----SG---------GG-------------TCEEEEECT------------------------TS--------
T ss_pred H-HHHHH----HH---------Hc-------------CCEEEEeCC------------------------CC--------
Confidence 1 11000 00 00 000011110 01
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC
Q 002941 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (863)
Q Consensus 601 ~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (863)
.+.+++.+. +++.+|+++.. ++..|.+.+ +++|.++|++||+++|+||+|+. |.... ..+ +
T Consensus 207 ~~~l~~~i~--------~~tk~v~l~~p-~NptG~v~~----l~~i~~la~~~gi~livDea~~~-g~~~~--~~~-~-- 267 (464)
T 1ibj_A 207 LDEVAAAIG--------PQTKLVWLESP-TNPRQQISD----IRKISEMAHAQGALVLVDNSIMS-PVLSR--PLE-L-- 267 (464)
T ss_dssp HHHHHHHCC--------SSEEEEEECSS-CTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTC-TTTCC--GGG-T--
T ss_pred HHHHHHHhc--------cCceEEEEeCC-CCCCCEeec----HHHHHHHHHHcCCEEEEECCCcc-cccCC--hhh-c--
Confidence 234555552 35789999997 899998875 99999999999999999999952 22111 112 3
Q ss_pred CCcEE--EeccccCC--CCCCceeeecc-HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHH
Q 002941 681 VPDIA--CYGKLLTG--GVIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (863)
Q Consensus 681 ~PDiv--t~sKgLgg--G~~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~ 755 (863)
.+|++ +++|.++| | +++|+++++ +++++.+... ........+|+++++++++|+.+. ...++..++
T Consensus 268 ~~div~~S~sK~~~g~~G-l~~G~l~~~~~~l~~~l~~~------~~~~g~~~~~~~~~a~~~al~~~~--~r~~~~~~~ 338 (464)
T 1ibj_A 268 GADIVMHSATKFIAGHSD-VMAGVLAVKGEKLAKEVYFL------QNSEGSGLAPFDCWLCLRGIKTMA--LRIEKQQEN 338 (464)
T ss_dssp TCSEEEEETTTTTTCSSC-CCCEEEEECSHHHHHHHHHH------HHHTTCBCCHHHHHHHHHHHTTHH--HHHHHHHHH
T ss_pred CCEEEEECCcccccCCCC-CcEEEEEEChHHHHHHHHHH------HHhcCCCCCHHHHHHHHhchhhHH--HHHHHHHHH
Confidence 47887 57999986 7 789999998 4787776531 111234457888888888876432 112233333
Q ss_pred HHHHHHHHHHH------HHHHHhcCCCee----EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---
Q 002941 756 RRILRELWDLE------LIQQISSHRTVQ----RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--- 822 (863)
Q Consensus 756 ~~~l~~~l~~~------l~~~~~~~p~v~----~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--- 822 (863)
...+.+++.+. +.+.+.++|.+. ..+|.|.++.+++... .....+.+.|...||.++++
T Consensus 339 ~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~--------~~~~~~~~~L~~~gi~v~~G~~~ 410 (464)
T 1ibj_A 339 ARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSV--------ALSKHLVETTKYFSIAVSFGSVK 410 (464)
T ss_dssp HHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCH--------HHHHHHHHHCSSSEECSCCCSSS
T ss_pred HHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECCH--------HHHHHHHHhcCcceEeecCCCCc
Confidence 33343333211 001122233221 1245688999988421 12345777776666655432
Q ss_pred -------------------------CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 823 -------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 823 -------------------------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.+.+|+.+.. |+++++++.|++++++
T Consensus 411 sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 411 SLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKT 461 (464)
T ss_dssp CEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred eeeecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHhh
Confidence 2578998765 8899999999988754
No 198
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.56 E-value=3e-13 Score=152.82 Aligned_cols=317 Identities=15% Similarity=0.080 Sum_probs=186.7
Q ss_pred cHHHHHHHHHHHHhcccc-c-CCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccc
Q 002941 418 QIELARDMGYTAARFGHV-M-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~-~-~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr 495 (863)
+|++.+|+.+++++..+. . ...+..+...+++++|+++++. +.++|++||++|++.+++.+ + . + .|
T Consensus 15 ~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~---~~~i~~~~gt~al~~~~~~~-~-~----~--~g- 82 (418)
T 2c81_A 15 SDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGV---PYCVPTTSGSTALMLALEAL-G-I----G--EG- 82 (418)
T ss_dssp CHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHT-T-C----C--TT-
T ss_pred CHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHc-C-C----C--Cc-
Confidence 589999999999874322 1 1112345588999999999873 47888999999999999876 1 0 0 12
Q ss_pred cCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcc-hhhhhhcc
Q 002941 496 LGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVE 574 (863)
Q Consensus 496 ~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~-~~~~~~~~ 574 (863)
.+||+...+||+........ |.. +..++... .+
T Consensus 83 -----------d~Vl~~~~~~~~~~~~~~~~-g~~----------------------------~~~~~~~~~~~------ 116 (418)
T 2c81_A 83 -----------DEVIVPSLTWIATATAVLNV-NAL----------------------------PVFVDVEADTY------ 116 (418)
T ss_dssp -----------CEEEEESSSCTHHHHHHHHT-TCE----------------------------EEEECBCTTTC------
T ss_pred -----------CEEEECCCccHhHHHHHHHc-CCE----------------------------EEEEecCCCCC------
Confidence 57999999999875443221 100 00111100 00
Q ss_pred ccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC
Q 002941 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (863)
Q Consensus 575 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g 654 (863)
.-| .+.+++.+. .++.+|++... .|...+ +++|.++|++||
T Consensus 117 ---------------~~d--------~~~l~~~i~--------~~~~~v~~~~~----~G~~~~----~~~i~~~~~~~~ 157 (418)
T 2c81_A 117 ---------------CID--------PQLIKSAIT--------DKTKAIIPVHL----FGSMAN----MDEINEIAQEHN 157 (418)
T ss_dssp ---------------SBC--------HHHHGGGCC--------TTEEEECCBCC----TTCCCC----HHHHHHHHHHTT
T ss_pred ---------------CcC--------HHHHHHhhC--------CCCeEEEEeCC----cCCccc----HHHHHHHHHHCC
Confidence 011 123333331 24667776543 354433 899999999999
Q ss_pred CeEEEecccccccc-cCCcchhhhcCCCCcEE--Ee--ccccCCCCCCceeeecc-HHHHHhhhc---CCccc-------
Q 002941 655 IPVIFDEVFTGFWR-LGVETTADLLGCVPDIA--CY--GKLLTGGVIPLAATLAT-NAVFDSFVG---DSKLK------- 718 (863)
Q Consensus 655 ilLI~DEV~TGfGR-tG~~~a~e~~gv~PDiv--t~--sKgLggG~~Pigav~~~-~~i~~~l~~---~~~~~------- 718 (863)
+++|+||+|+.+.. .|. .++..+|++ +| +|.+++| .+|+++++ +++++.+.. .....
T Consensus 158 ~~li~D~a~~~~~~~~~~-----~~~~~~~~~~~s~s~~K~~~~g--~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 230 (418)
T 2c81_A 158 LFVIEDCAQSHGSVWNNQ-----RAGTIGDIGAFSCQQGKVLTAG--EGGIIVTKNPRLFELIQQLRADSRVYCDDSSEL 230 (418)
T ss_dssp CEEEEECTTCTTCEETTE-----ETTSSSSEEEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGC
T ss_pred CEEEEECcccccCccCCE-----ecccccceEEEeccCCcccCCC--CeEEEEECCHHHHHHHHHHHHhCcccccccccc
Confidence 99999999976542 222 123334665 45 8999876 78888884 787766542 11000
Q ss_pred --eee--------cccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-cccc---
Q 002941 719 --ALL--------HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VALG--- 784 (863)
Q Consensus 719 --~~~--------~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-rg~G--- 784 (863)
.+. .+..+..+++.++.+.+.++.++ ++.++.. .+.+.+ .+.+.+.|.+.-. ...|
T Consensus 231 ~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~--~~~~~~~----~~~~~l----~~~L~~~~g~~~~~~~~~~~~ 300 (418)
T 2c81_A 231 MHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELD--DKNAIRE----KNAMFL----NDALSKIDGIKVMKRPPQVSR 300 (418)
T ss_dssp CTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHH--HHHHHHH----HHHHHH----HHHHTTSTTEEECCCCTTEEE
T ss_pred ccchhhccccccccCcCCCcCHHHHHHHHHHHHHHH--HHHHHHH----HHHHHH----HHHhccCCCcccCCCCCCCcc
Confidence 011 11222346666655555554332 1222333 333332 3334455544322 1222
Q ss_pred ---eEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcE---EEec-------------------------------C---
Q 002941 785 ---TLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVY---MRPL-------------------------------G--- 823 (863)
Q Consensus 785 ---l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~---~~p~-------------------------------g--- 823 (863)
.++.+.+.+... .. .....+.+.|.++ ||. +++. +
T Consensus 301 ~~~~~~~~~~~~~~~-~~---~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (418)
T 2c81_A 301 QTYYGYVFRFDPVKF-GG---LNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYP 376 (418)
T ss_dssp CCCSEEEEEECGGGT-TT---CCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCH
T ss_pred cccEEEEEEEccccc-cc---cCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCCh
Confidence 245566653100 00 0146788999999 999 7642 1
Q ss_pred -------CEEEEecCCCC-cHHHHHHHHHHHHHHHHH
Q 002941 824 -------NVIYLMCGPCS-SPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 824 -------~~lr~~ppl~~-t~eeid~~v~~L~~~l~~ 852 (863)
+.+|+.++..+ |+||++.++++|++++++
T Consensus 377 ~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~ 413 (418)
T 2c81_A 377 VSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARK 413 (418)
T ss_dssp HHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHh
Confidence 47999888888 999999999999988764
No 199
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.56 E-value=2.2e-13 Score=153.56 Aligned_cols=283 Identities=10% Similarity=0.072 Sum_probs=177.1
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
+.++...+|.++|+++.+. +.+++++||++|++.|++ .++ .| .+||+....|||.
T Consensus 52 ~~~~~~~~lr~~la~~~g~---~~~i~~~sGt~a~~~al~-~~~---------~g------------d~Vi~~~~~y~~~ 106 (393)
T 1n8p_A 52 SQNPNRENLERAVAALENA---QYGLAFSSGSATTATILQ-SLP---------QG------------SHAVSIGDVYGGT 106 (393)
T ss_dssp TCCHHHHHHHHHHHHHTTC---SEEEEESCHHHHHHHHHH-TSC---------SS------------CEEEEESSCCHHH
T ss_pred CCChhHHHHHHHHHHHhCC---CcEEEECChHHHHHHHHH-HcC---------CC------------CEEEEeCCCchHH
Confidence 4567788999999999874 478888899999999998 421 12 5799999988874
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
. ..+... .. ..+. . + ..+| .. .
T Consensus 107 ~-~~~~~~----~~---------~~G~--~---------v--~~v~------------------------------~~-d 128 (393)
T 1n8p_A 107 H-RYFTKV----AN---------AHGV--E---------T--SFTN------------------------------DL-L 128 (393)
T ss_dssp H-HHHHHT----ST---------TTCS--C---------C--EEES------------------------------SH-H
T ss_pred H-HHHHHH----HH---------HcCc--E---------E--EEeC------------------------------CC-h
Confidence 2 211100 00 0000 0 0 0011 00 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc----CCeEEEecccccccccCCcchh
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR----KIPVIFDEVFTGFWRLGVETTA 675 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~----gilLI~DEV~TGfGRtG~~~a~ 675 (863)
+.+++.+. +++.+|++|.+ +++.|.+.+ +++|.++|++| |++||+||+|+++.+ +....
T Consensus 129 --~~l~~~i~--------~~t~lv~~~~~-~nptG~~~~----l~~i~~la~~~~~~~~~~livD~a~~~~~~-~~~~~- 191 (393)
T 1n8p_A 129 --NDLPQLIK--------ENTKLVWIETP-TNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLSPYI-SNPLN- 191 (393)
T ss_dssp --HHHHHHSC--------SSEEEEEECSS-CTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTHHHH-CCGGG-
T ss_pred --HHHHHhcc--------cCceEEEEECC-CCCcceecC----HHHHHHHHHHhCCCCCCEEEEeCCcccccc-CCHHH-
Confidence 23455442 35788999997 899998876 99999999999 999999999986644 33322
Q ss_pred hhcCCCCcEE--EeccccCCCCCCc-eeeecc-HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHh
Q 002941 676 DLLGCVPDIA--CYGKLLTGGVIPL-AATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN 751 (863)
Q Consensus 676 e~~gv~PDiv--t~sKgLggG~~Pi-gav~~~-~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~ 751 (863)
+ .+|++ +++|.+++.-+++ |+++++ +++++.+.... .......+|..++++.++++.+. ...++
T Consensus 192 --~--~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~------~~~g~~~~~~~~~~~~~~l~~~~--~~~~~ 259 (393)
T 1n8p_A 192 --F--GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQ------NAIGAIPSPFDAWLTHRGLKTLH--LRVRQ 259 (393)
T ss_dssp --G--TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHH------HHHCCCCCHHHHHHHHHHHTTHH--HHHHH
T ss_pred --c--CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHH------HhcCCCCCHHHHHHHHhccchHH--HHHHH
Confidence 2 37887 6789998633788 788875 78888775311 11123346888887777776542 12334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-eeEe------------------cc-c-ceEEEEEEccCCcCCCCchHHHHHHHH
Q 002941 752 IIPERRILRELWDLELIQQISSHRT-VQRV------------------VA-L-GTLCAIELQAAGCNAGYGSLYAASLLK 810 (863)
Q Consensus 752 l~~~~~~l~~~l~~~l~~~~~~~p~-v~~v------------------rg-~-Gl~~~iel~~~~~~~~~~~~~~~~l~~ 810 (863)
..++.+.+.+ .+.+++. +..+ +| . |.++.+++.... .....+..
T Consensus 260 ~~~~~~~l~~--------~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~-------~~~~~~l~ 324 (393)
T 1n8p_A 260 AALSANKIAE--------FLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGA-------EAASKFAS 324 (393)
T ss_dssp HHHHHHHHHH--------HHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCH-------HHHHHHHH
T ss_pred HHHHHHHHHH--------HHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcH-------HHHHHHHh
Confidence 4444444443 3334443 3322 34 6 889999996421 12445555
Q ss_pred HHHHCCcEE----------Ee---------------c---CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 811 KLREDGVYM----------RP---------------L---GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 811 ~l~e~GV~~----------~p---------------~---g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
.|...|+.+ .| . .+.+|++.....++++|+.+.++|+++
T Consensus 325 ~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 325 STRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp HCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred hCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 543323211 11 0 268999988888888888888877653
No 200
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.55 E-value=8e-14 Score=157.69 Aligned_cols=289 Identities=9% Similarity=0.055 Sum_probs=177.8
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
+.++...+|.++|+++.+. +..++++||++|+..+++ .++ .| .+||+....|||.
T Consensus 64 ~~~p~~~~l~~~la~~~g~---~~~i~~~sG~~ai~~~~~-l~~---------~g------------d~Vl~~~~~y~~~ 118 (403)
T 3cog_A 64 SGNPTRNCLEKAVAALDGA---KYCLAFASGLAATVTITH-LLK---------AG------------DQIICMDDVYGGT 118 (403)
T ss_dssp --CHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHT-TSC---------TT------------CEEEEESSCCHHH
T ss_pred CCCchHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHH-HhC---------CC------------CEEEEeCCCcchH
Confidence 4567788999999999874 467777899999999887 421 12 5799999999885
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
......+.. .. |.....+|. +|
T Consensus 119 ~~~~~~~~~--------------~~-------------G~~v~~v~~------------------------~d------- 140 (403)
T 3cog_A 119 NRYFRQVAS--------------EF-------------GLKISFVDC------------------------SK------- 140 (403)
T ss_dssp HHHHHHTGG--------------GG-------------TCEEEEECT------------------------TS-------
T ss_pred HHHHHHHHH--------------Hc-------------CCEEEEECC------------------------CC-------
Confidence 321110000 00 000011110 01
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC-CeEEEecccccccccCCcchhhhc
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK-IPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g-ilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. +++.+|++|.. ++..|.+.+ +++|.++|++|| +++|+||+++++ ..+.. +
T Consensus 141 -~~~l~~~i~--------~~t~~v~~~~p-~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~~-~~~~~-----~ 200 (403)
T 3cog_A 141 -IKLLEAAIT--------PETKLVWIETP-TNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMSP-YFQRP-----L 200 (403)
T ss_dssp -HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTCT-TTCCT-----T
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCccc-ccCCc-----c
Confidence 234555552 35778889987 899998876 999999999999 999999999765 22222 2
Q ss_pred CCCCcEE--EeccccCC-CCCCceeeecc-HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 679 GCVPDIA--CYGKLLTG-GVIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 679 gv~PDiv--t~sKgLgg-G~~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
+..+|++ +++|.++| |-.++|+++++ +++++.+.. .....+...+|+.++++++.|+.+. ...++..+
T Consensus 201 ~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~------~~~~~g~~~~~~~~~~~~~~l~~l~--~r~~~~~~ 272 (403)
T 3cog_A 201 ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRF------LQNSLGAVPSPIDCYLCNRGLKTLH--VRMEKHFK 272 (403)
T ss_dssp TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHH------HHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHH
T ss_pred ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHH------HHHhcCCCCCHHHHHHHHhhhhHHH--HHHHHHHH
Confidence 2457888 67899985 32578999984 788887753 1233455678999988888887542 12344445
Q ss_pred HHHHHHHHHHHH------HHHHHhcCCCee----EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--
Q 002941 755 ERRILRELWDLE------LIQQISSHRTVQ----RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-- 822 (863)
Q Consensus 755 ~~~~l~~~l~~~------l~~~~~~~p~v~----~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-- 822 (863)
+...+.+++.+. +...+.++|.+. ..++.|.|+.+++... .....+.+.+.||+.+..
T Consensus 273 n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~----------~~~~~~~l~~~~i~~~~~s~ 342 (403)
T 3cog_A 273 NGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT----------LQHAEIFLKNLKLFTLAESL 342 (403)
T ss_dssp HHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC----------HHHHHHHHHHCSSSEECSCC
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC----------HHHHHHHHHhCCcceEccCC
Confidence 555554433211 000112223211 1235688999987532 123445566778765420
Q ss_pred -----------------------------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 823 -----------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 823 -----------------------------g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
.+.+|++.....++++|+.+.++|+++
T Consensus 343 G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~ 398 (403)
T 3cog_A 343 GGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAA 398 (403)
T ss_dssp SSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHh
Confidence 368999987766766666666665543
No 201
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.54 E-value=2.7e-13 Score=157.65 Aligned_cols=345 Identities=12% Similarity=0.044 Sum_probs=194.3
Q ss_pred cHHHHHHHHHHHHhccc--c-c--CCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHHHHHHHHHHHhhccc
Q 002941 418 QIELARDMGYTAARFGH--V-M--FPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~--~-~--~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~ 491 (863)
.+++++++.+++.+... . . ...+..+...++++.+.+..+.+ ..+.++++++|++|+..+++.... +
T Consensus 108 p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~- 180 (500)
T 3tcm_A 108 SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIR------N- 180 (500)
T ss_dssp CHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCC------S-
T ss_pred CHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcC------C-
Confidence 56788888888877521 1 1 11122244555666665443311 136899999999999999987620 0
Q ss_pred cccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhh
Q 002941 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (863)
Q Consensus 492 ~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~ 571 (863)
.| ..|++...+|++........+. . +..+++...
T Consensus 181 -~g------------d~Vlv~~p~y~~~~~~~~~~g~-~----------------------------~~~~~~~~~---- 214 (500)
T 3tcm_A 181 -EK------------DGILVPIPQYPLYSASIALHGG-A----------------------------LVPYYLNES---- 214 (500)
T ss_dssp -TT------------EEEEEEESCCTHHHHHHHHTTC-E----------------------------EEEEECBTT----
T ss_pred -CC------------CEEEEeCCCcHhHHHHHHHcCC-E----------------------------EEEEecccc----
Confidence 11 5789888888876543322211 0 001111100
Q ss_pred hccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEE-EEEEccccccCCCceeCCHHHHHHHHHHH
Q 002941 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG-ALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (863)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iA-AvIvEPViqg~gG~~~pp~~fL~~Lrelc 650 (863)
..| ..| .+.+++.+.+. .....++. .+++.| ++..|.+ .+.+.+++|.++|
T Consensus 215 -------------~~~--~~d--------~~~l~~~l~~~--~~~~~~~k~ivl~~p--~NPtG~~-~s~~~l~~i~~la 266 (500)
T 3tcm_A 215 -------------TGW--GLE--------TSDVKKQLEDA--RSRGINVRALVVINP--GNPTGQV-LAEENQYDIVKFC 266 (500)
T ss_dssp -------------TTS--BCC--------HHHHHHHHHHH--HHTTCEEEEEEEESS--CTTTCCC-CCHHHHHHHHHHH
T ss_pred -------------cCC--CCC--------HHHHHHHHHHH--HhcCCCceEEEEECC--CCCCccc-CCHHHHHHHHHHH
Confidence 000 012 23455555420 00112444 445555 7888854 4677899999999
Q ss_pred HHcCCeEEEecccccccccC--Ccchh----hhcCC-CC--c-EE--Eecccc-C-CCCCCceeeec---cHHHHHhhhc
Q 002941 651 QNRKIPVIFDEVFTGFWRLG--VETTA----DLLGC-VP--D-IA--CYGKLL-T-GGVIPLAATLA---TNAVFDSFVG 713 (863)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG--~~~a~----e~~gv-~P--D-iv--t~sKgL-g-gG~~Pigav~~---~~~i~~~l~~ 713 (863)
++||+++|+||++.++...+ ....+ ..++. .. + ++ +|||++ | .| +++|++++ ++++++.+..
T Consensus 267 ~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~ 345 (500)
T 3tcm_A 267 KNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECG-KRGGYFEITGFSAPVREQIYK 345 (500)
T ss_dssp HHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGG-GCCEEEEEESCCTTHHHHHHH
T ss_pred HHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCc-cceEEEEEeCCCHHHHHHHHH
Confidence 99999999999998764432 12221 22332 22 2 33 789999 4 47 89999988 8999888764
Q ss_pred CCccceeecccCCCccHHHHHHHHHHHHHhc-Ch----hhHH---hHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccce
Q 002941 714 DSKLKALLHGHSYSAHALGCAAAAKSIKWFK-DP----QTNH---NIIPERRILRELWDLELIQQISSHRTVQRVVALGT 785 (863)
Q Consensus 714 ~~~~~~~~~~~T~~~~pla~AAalAaL~~l~-~~----~l~~---~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl 785 (863)
....+++.++++++++.++|+-.+ .+ .+.+ .+.+..+..++ .+.+.+.+.|.+..+...|.
T Consensus 346 -------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~l~~~L~~~~g~~~~~~~g~ 414 (500)
T 3tcm_A 346 -------IASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAK----ALEHAFNKLEGITCNEAEGA 414 (500)
T ss_dssp -------HHHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHH----HHHHHHHTSTTEECCCCCBT
T ss_pred -------HHhcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHH----HHHHHHhcCCCcEEecCCeE
Confidence 123455678888888887776211 00 0111 22222222222 23344555666655555554
Q ss_pred EEE-EEEccCCcC----CCCchHHHHHH-HHHHHHCCcEEEec--------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 786 LCA-IELQAAGCN----AGYGSLYAASL-LKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 786 ~~~-iel~~~~~~----~~~~~~~~~~l-~~~l~e~GV~~~p~--------g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
|+. +.+..+... ..........+ ...|.++||++.|+ .+.+|++.. ++++++++++++|.++++
T Consensus 415 ~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~i~~l~~~~~ 492 (500)
T 3tcm_A 415 MYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKIPAVISRFTVFHE 492 (500)
T ss_dssp TEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTHHHHHHHHHHHHH
T ss_pred EEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHH
Confidence 443 333311100 00000001222 35566789999873 146888754 899999999999999998
Q ss_pred HHHHHH
Q 002941 852 EFDKVE 857 (863)
Q Consensus 852 ~l~~~~ 857 (863)
++.+.+
T Consensus 493 ~~~~~~ 498 (500)
T 3tcm_A 493 AFMSEY 498 (500)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 876543
No 202
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.53 E-value=4.7e-13 Score=152.45 Aligned_cols=316 Identities=13% Similarity=0.034 Sum_probs=182.6
Q ss_pred cHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccC
Q 002941 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~ 497 (863)
++++.+|+.+++....+ +..+...+|.++|+++++. +.++|++||++|++.|++.+ ..++..+.. .+
T Consensus 42 ~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~la~~~g~---~~~i~~~sGt~a~~~al~~l-~~~~~~~~~-~~--- 108 (437)
T 3bb8_A 42 GTKELQLMVEASLDGWL-----TTGRFNDAFEKKLGEYLGV---PYVLTTTSGSSANLLALTAL-TSPKLGVRA-LK--- 108 (437)
T ss_dssp CHHHHHHHHHHHHHCCC-----BSCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHT-TCGGGGGGS-CC---
T ss_pred CHHHHHHHHHHHHcCCc-----CCChHHHHHHHHHHHHHCC---CcEEEeCCHHHHHHHHHHHh-hhccccccc-CC---
Confidence 48999999999876433 2356788999999999984 57999999999999999876 211100000 00
Q ss_pred CCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcc-hhhhhhcccc
Q 002941 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVEHK 576 (863)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~-~~~~~~~~~~ 576 (863)
+..+||+...+||+....+... |.. +..++... .+
T Consensus 109 -------~gd~Vi~~~~~~~~~~~~~~~~-g~~----------------------------~~~v~~~~~~~-------- 144 (437)
T 3bb8_A 109 -------PGDEVITVAAGFPTTVNPTIQN-GLI----------------------------PVFVDVDIPTY-------- 144 (437)
T ss_dssp -------TTCEEEECSSSCHHHHHHHHHT-TCE----------------------------EEECCEETTTT--------
T ss_pred -------CcCEEEECCCCcHHHHHHHHHc-CCE----------------------------EEEEeccCccC--------
Confidence 0257999999988875443321 100 00011000 00
Q ss_pred ccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCceeCCHHHHHHHHHHHHHcCC
Q 002941 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (863)
Q Consensus 577 ~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fL~~Lrelc~~~gi 655 (863)
. -| .+.+++.+. .++.+|++ ++. |.. ..+++|.++|++||+
T Consensus 145 -----------~--~d--------~~~l~~~i~--------~~~~~v~~~~~~-----g~~----~~~~~i~~l~~~~~~ 186 (437)
T 3bb8_A 145 -----------N--VN--------ASLIEAAVS--------DKTKAIMIAHTL-----GNL----FDLAEVRRVADKYNL 186 (437)
T ss_dssp -----------E--EC--------GGGHHHHCC--------TTEEEEEEECGG-----GCC----CCHHHHHHHHHHHTC
T ss_pred -----------C--cC--------HHHHHHhcC--------CCCeEEEEeCCC-----CCh----hcHHHHHHHHHHcCC
Confidence 0 01 123444442 24556655 432 222 238999999999999
Q ss_pred eEEEecccc-cccccCCcchhhhcCCCCcEEEe----ccccCCCCCCceeeeccHHHHH-hh---hcCCcc---------
Q 002941 656 PVIFDEVFT-GFWRLGVETTADLLGCVPDIACY----GKLLTGGVIPLAATLATNAVFD-SF---VGDSKL--------- 717 (863)
Q Consensus 656 lLI~DEV~T-GfGRtG~~~a~e~~gv~PDivt~----sKgLggG~~Pigav~~~~~i~~-~l---~~~~~~--------- 717 (863)
++|+||+|+ |.... ...++..+|++++ +|+++|| ..|+++++++.+. .+ ......
T Consensus 187 ~li~D~a~~~g~~~~-----~~~~~~~~d~~~~s~~~~k~l~~g--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (437)
T 3bb8_A 187 WLIEDCCDALGSTYD-----GKMAGTFGDIGTVSFYPAKHITMG--EGGAVFTQSAELKSIIESFRDWGRDCYCAPGCDN 259 (437)
T ss_dssp EEEEECTTCTTCEET-----TEETTSSSSEEEEECSTTSSSCCS--SCEEEEESCHHHHHHHHHHHBTTBCC--------
T ss_pred EEEEECccccCceEC-----CeecccccCEEEEECcCCcCCCCC--CeEEEEeCCHHHHHHHHHHHHhCccccccccccc
Confidence 999999996 33222 2344556898765 4888765 3788888755433 32 111100
Q ss_pred ------------------c---eeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002941 718 ------------------K---ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (863)
Q Consensus 718 ------------------~---~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~ 776 (863)
. ....++++..++++++++++.|+.+ +++.++.+++.+++.+ .+.+.+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~~--~~~~~~~~~~~~~l~~--------~L~~~~g 329 (437)
T 3bb8_A 260 TCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLERI--EEFVEKRKANFKYLKD--------ALQSCAD 329 (437)
T ss_dssp --------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH--------HGGGGTT
T ss_pred ccccccccccccccccccccccccccCcccCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH--------HhhccCC
Confidence 0 0012233445799999999998765 2333444444444333 2333322
Q ss_pred eeEec------ccce-EEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--------------------------
Q 002941 777 VQRVV------ALGT-LCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-------------------------- 823 (863)
Q Consensus 777 v~~vr------g~Gl-~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-------------------------- 823 (863)
+..+. ..+. .+.+.+..+. . .....+.+.|.++||.+++..
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~l~~~L~~~GI~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 403 (437)
T 3bb8_A 330 FIELPEATENSDPSWFGFPITLKEDS-G-----VSRIDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDR 403 (437)
T ss_dssp TEECCCCCTTEECCCSSEEEEECGGG-S-----SCHHHHHHHHHHTTBCCBCCTTSSGGGSGGGSSCCCEECSCCHHHHH
T ss_pred ccccCCCCCCCceeeEEEEEEECCcC-c-----CcHHHHHHHHHHCCCceeccCCcccccCchhhccCccccCCCcHHHH
Confidence 11111 1121 1222232110 0 014578899999999987421
Q ss_pred ---CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 824 ---NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 824 ---~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
..+|+.....+|++||+.++++|.++++
T Consensus 404 ~~~~~lrl~~~~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 404 IMNQTFWIGIYPGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp HHHHEEEECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred HhcCEEEecCCCCCCHHHHHHHHHHHHHHHc
Confidence 1378876777899999999999987653
No 203
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.51 E-value=1.7e-13 Score=156.57 Aligned_cols=299 Identities=9% Similarity=-0.005 Sum_probs=178.8
Q ss_pred CcHHHHHHHHHHHHh---cccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEE---eCChhhHHHHHHHHHHHHHHhhcc
Q 002941 417 LQIELARDMGYTAAR---FGHVMFPENVYEPALECAELLLQGVGKGWASRAYF---SDNGSTAIEIALKMAFRKFSFDHE 490 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~---~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f---~~SGSeAvE~ALklA~r~~~~~~G 490 (863)
|+++|.+|+.++... +.......+......+|+++|+++++. +...+ ++||++|++.+++..++
T Consensus 36 n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~---~~~~~~i~~~sGt~Ai~~al~al~~------- 105 (431)
T 3ht4_A 36 NQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGA---EAGLVRPQIISGTHAISTALFGILR------- 105 (431)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTC---SEECCBTTSCSHHHHHHHHHHTTCC-------
T ss_pred HHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCC---CcccccceeeCHHHHHHHHHHHhCC-------
Confidence 578899988876322 222222334567788899999999874 34433 56999999999875521
Q ss_pred ccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhh
Q 002941 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (863)
Q Consensus 491 ~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (863)
+| .+||+..+..|+.+...+.+++. +++.+. . .|.....+|...
T Consensus 106 --~G------------d~Vl~~~~~~y~~~~~~~~l~g~--~~~~~~-----~-------------~G~~~~~v~~~~-- 149 (431)
T 3ht4_A 106 --PG------------DELLYITGKPYDTLEEIVGVRGK--GVGSFK-----E-------------YNIGYNAVPLTE-- 149 (431)
T ss_dssp --TT------------CEEEECSSSCCTTHHHHTTSSSC--SSSCSG-----G-------------GTCEEEECCBCT--
T ss_pred --CC------------CEEEEeCCCCchhHHHHHhhccc--ccchHH-----H-------------cCCEEEEeCCCC--
Confidence 12 57888887778877777766553 222110 0 011111222100
Q ss_pred hhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHH
Q 002941 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (863)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc 650 (863)
+...| .+.+++.+. .++.+|++|+..++..|. ..+...+++|.++|
T Consensus 150 -----------------~~~~d--------~e~l~~~l~--------~~tk~V~i~~sp~np~~~-~~~~~~l~~i~~la 195 (431)
T 3ht4_A 150 -----------------GGLVD--------FEAVAAAIH--------SNTKMIGIQRSKGYATRP-SFTISQIKEMIAFV 195 (431)
T ss_dssp -----------------TSSBC--------HHHHHHHCC--------TTEEEEEEECSCTTSSSC-CCCHHHHHHHHHHH
T ss_pred -----------------CCCcC--------HHHHHhhcC--------CCCeEEEEECCCCCCCCC-cCCHHHHHHHHHHH
Confidence 00012 244555553 367889999421445554 44777899999999
Q ss_pred HH--cCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCCC-CCceeeeccHHHHHhhhcCCccceeecccC
Q 002941 651 QN--RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGV-IPLAATLATNAVFDSFVGDSKLKALLHGHS 725 (863)
Q Consensus 651 ~~--~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~-~Pigav~~~~~i~~~l~~~~~~~~~~~~~T 725 (863)
++ ||++||+||++..+...+.... +| .|++ +++|.++||+ .+.|++++++++++.+.... .....+.+
T Consensus 196 ~~~~~~~~livDea~~~~~~~~~~~~---~g--~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~--~~~~~g~~ 268 (431)
T 3ht4_A 196 KEIKPDVVVFVDNCYGEFIEEQEPCH---VG--ADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRL--TSPGIGAE 268 (431)
T ss_dssp HHHCTTCEEEEECTTCTTSSSCCGGG---TT--CSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHH--SCTTTTTS
T ss_pred HhhCCCCEEEEeCCChhhccCCCccc---cC--CeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHh--ccCCcccc
Confidence 99 9999999999987754443322 23 4665 6899998854 45678889999988875310 00112233
Q ss_pred CCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHH
Q 002941 726 YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYA 805 (863)
Q Consensus 726 ~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~ 805 (863)
.+.++..+++++..++.+ +...++..++++++.+.|++... .-+|. ...++.+++++|++.+. ..+
T Consensus 269 ~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g~---~v~p~-~~~~~~~li~~i~l~~~--------~~~ 334 (431)
T 3ht4_A 269 AGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLGM---NTSPA-WNAPRTDLIQSVQFDDK--------DRM 334 (431)
T ss_dssp CSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTC---CEESC-TTSCCSSSCCEEECCCH--------HHH
T ss_pred cCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCcC---EecCC-CCCCCccEEEEEEeCCH--------HHH
Confidence 333223234455555544 33456677777777765533211 11222 23466778999998643 246
Q ss_pred HHHHHHHHHCC
Q 002941 806 ASLLKKLREDG 816 (863)
Q Consensus 806 ~~l~~~l~e~G 816 (863)
.++++.|.+..
T Consensus 335 ~~~~~~l~~~~ 345 (431)
T 3ht4_A 335 IAFCQAIQYAS 345 (431)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHhcC
Confidence 78888888763
No 204
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.48 E-value=1.6e-11 Score=143.21 Aligned_cols=325 Identities=14% Similarity=0.064 Sum_probs=180.5
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHH----hhccccccccCCCccccccccEEEEecCCCccCc
Q 002941 445 ALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS----FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (863)
Q Consensus 445 ~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~----~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t 520 (863)
..++.++|+++++.+ .+.++|+++||+||..|++.+ |.++ +..|.. +. .+..|++... .|.+.
T Consensus 150 e~~~~~~la~l~g~~-~~~~~~t~ggtea~~~al~~a-r~~~~~~~~~~G~~-~~---------~~~~vl~s~~-~h~s~ 216 (515)
T 2jis_A 150 EEEVLRKLRALVGWS-SGDGIFCPGGSISNMYAVNLA-RYQRYPDCKQRGLR-TL---------PPLALFTSKE-CHYSI 216 (515)
T ss_dssp HHHHHHHHHHHHTCS-SCEEEEESSHHHHHHHHHHHH-HHHHCTTHHHHCGG-GS---------CCEEEEEETT-SCTHH
T ss_pred HHHHHHHHHHHhCCC-CCCeEEcCCcHHHHHHHHHHH-HHHHhhHHhhcCcc-cc---------CCeEEEECCC-ccHHH
Confidence 455667788888743 358999999999999999998 4332 112210 00 0124555554 46665
Q ss_pred cccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHH
Q 002941 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (863)
Q Consensus 521 ~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 600 (863)
..++...+.. . ..+..++....+ .-|
T Consensus 217 ~~~~~~~g~g---------------~----------~~v~~v~~~~~~---------------------~~d-------- 242 (515)
T 2jis_A 217 QKGAAFLGLG---------------T----------DSVRVVKADERG---------------------KMV-------- 242 (515)
T ss_dssp HHHHHHTTSC---------------G----------GGEEEECBCTTS---------------------CBC--------
T ss_pred HHHHHHcCCC---------------C----------CcEEEEecCCCC---------------------cCC--------
Confidence 5444432210 0 011122221100 011
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC
Q 002941 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (863)
Q Consensus 601 ~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (863)
.+.|++.+++. ...+.++++|++... .+..|.+.+ +++|.++|++||++|++|++++|+......+.....|+
T Consensus 243 ~~~L~~~i~~~--~~~g~~~~~Vv~~~~-~n~tG~i~~----l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~ 315 (515)
T 2jis_A 243 PEDLERQIGMA--EAEGAVPFLVSATSG-TTVLGAFDP----LEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGI 315 (515)
T ss_dssp HHHHHHHHHHH--HHTTCEEEEEEEEBS-CTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTG
T ss_pred HHHHHHHHHHH--HhCCCCcEEEEEeCC-CCCCCCccC----HHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCC
Confidence 23455555320 011235778888775 778887766 99999999999999999999988766555444444466
Q ss_pred -CCcEEEe--ccccCCCCCCceeeeccHH--HHHhhhc-CCccc----e----eecc------cCCCccHHHHHHHHHHH
Q 002941 681 -VPDIACY--GKLLTGGVIPLAATLATNA--VFDSFVG-DSKLK----A----LLHG------HSYSAHALGCAAAAKSI 740 (863)
Q Consensus 681 -~PDivt~--sKgLggG~~Pigav~~~~~--i~~~l~~-~~~~~----~----~~~~------~T~~~~pla~AAalAaL 740 (863)
.+|++++ .|.++++ .++|+++++++ +++.... ..... . .+.. .+.....+++.++++++
T Consensus 316 ~~aD~v~~s~hK~l~~p-~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~l 394 (515)
T 2jis_A 316 QRADSVAWNPHKLLAAG-LQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQ 394 (515)
T ss_dssp GGCSEEEECTTSTTCCC-SCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHH
T ss_pred ccCCEEEECcccccCCC-CCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHH
Confidence 7899988 8999877 58899998876 6553211 00000 0 0000 01111244444444444
Q ss_pred HHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec-ccceEEEEEEccCCcC---CCCc--h---HHHHHHHHH
Q 002941 741 KWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV-ALGTLCAIELQAAGCN---AGYG--S---LYAASLLKK 811 (863)
Q Consensus 741 ~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr-g~Gl~~~iel~~~~~~---~~~~--~---~~~~~l~~~ 811 (863)
. .++ ++++.+....+.+++.+ .+.+.|.+.-+. .....+.+.+...... .... . .....+.+.
T Consensus 395 g---~~g-~~~~~~~~~~~a~~l~~----~L~~~~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~ 466 (515)
T 2jis_A 395 G---DQG-LERRIDQAFVLARYLVE----EMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKER 466 (515)
T ss_dssp H---HHH-HHHHHHHHHHHHHHHHH----HHHTSTTEEESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHH
T ss_pred h---HHH-HHHHHHHHHHHHHHHHH----HHhcCCCEEEeCCCCeeEEEEEEeCccccccccchhHHHHHHHHHHHHHHH
Confidence 3 222 23344444444444433 334445432221 1233444444321100 0000 0 012347778
Q ss_pred HHHCCcEEEe----cC--CEEEEec-CCCCcHHHHHHHHHHHHHHHHH
Q 002941 812 LREDGVYMRP----LG--NVIYLMC-GPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 812 l~e~GV~~~p----~g--~~lr~~p-pl~~t~eeid~~v~~L~~~l~~ 852 (863)
|.++|+++.. .+ +.+|+++ +..+|++||++++++|++++++
T Consensus 467 l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 467 MVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp HHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 8899976532 22 5899998 7889999999999999887643
No 205
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.46 E-value=1.7e-13 Score=157.08 Aligned_cols=201 Identities=12% Similarity=0.055 Sum_probs=127.1
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccccccc-CCcchhhhcCCCCcEEEec--cccCCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL-GVETTADLLGCVPDIACYG--KLLTGGVI 696 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRt-G~~~a~e~~gv~PDivt~s--KgLggG~~ 696 (863)
+.+|++.+- +..|.+.+ +++|.++|++||++||+||+|++..+. |..+....+| +|+++.| |.++|+ .
T Consensus 147 ~~~v~~~~~--n~~G~~~~----l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g--~Di~~~S~~K~l~~~-~ 217 (446)
T 2x3l_A 147 HKLVVLTYP--NYYGETFN----VEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQ--ADYVVQSFHKTLPAL-T 217 (446)
T ss_dssp CCEEEEESS--CTTSCCCC----HHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGT--CSEEEECHHHHSSSC-T
T ss_pred ceEEEEECC--CCCeEecC----HHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcC--CCEEEECCccccccc-c
Confidence 445555552 34777765 899999999999999999999762222 2222222333 7999876 998877 6
Q ss_pred CceeeeccHHHHH--hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 697 PLAATLATNAVFD--SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 697 Pigav~~~~~i~~--~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
++|++++++++++ .+... .....+.+.+...+++..++++.+++.+ .+++.+....+.+.+.+. ..
T Consensus 218 g~g~l~~~~~~i~~~~~~~~-----~~~~~~~s~~~~~~aal~~a~~~l~~~g-~~~~~~~~~~l~~~l~~~------g~ 285 (446)
T 2x3l_A 218 MGSVLYIHKNAPYRENIIEY-----LSYFQTSSPSYLIMASLESAAQFYKTYD-STLFFAKRAQLIECLENK------GF 285 (446)
T ss_dssp TCEEEEEETTCTTHHHHHHH-----HHHHSCSSCCHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHH------TC
T ss_pred ccEEEEEcCCcCCHHHHHHH-----HHHHcCCCchHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHc------CC
Confidence 7899999887654 22210 1122345567777777777777775322 112333333344333222 11
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE-ecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR-PLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~-p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
..+. ...+..+.+.+... ....+.+.|+++||.+. +..+.+|++++..+|++++ +++++|.++++.+
T Consensus 286 ~~~~--~~~~~~l~i~~~~~---------~~~~l~~~L~~~GI~v~~~g~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 286 EMLQ--VDDPLKLLIKYEGF---------TGHDIQNWFMNAHIYLELADDYQALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp EEEE--CSSTTEEEEECTTS---------CHHHHHHHHHHTTEEESEECSSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred EECc--CCCCeEEEEEeCCc---------CHHHHHHHHHHCCCEEEecCCCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 1111 11233455555311 14578889999999998 5558899999888899999 9999998887544
No 206
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.45 E-value=3.6e-11 Score=139.68 Aligned_cols=218 Identities=11% Similarity=0.042 Sum_probs=129.9
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-CCcEEEec--cccCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACYG--KLLTGGV 695 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivt~s--KgLggG~ 695 (863)
++.+|++.-. .+..|.+.+ +++|.++|++||++|++|+++.|+......+.....|+ .+|+++++ |.++++
T Consensus 245 ~~~~V~~~~~-~~~tG~i~~----l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p- 318 (504)
T 2okj_A 245 VPFYVNATAG-TTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVL- 318 (504)
T ss_dssp EEEEEEECBS-CSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-
T ss_pred CceEEEEeCC-CCCCCCcCC----HHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCC-
Confidence 5667777654 677787765 99999999999999999999987754333222333344 68999886 998877
Q ss_pred CCceeeeccH-HHHHhhh-cCCccceeeccc----------------CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHH
Q 002941 696 IPLAATLATN-AVFDSFV-GDSKLKALLHGH----------------SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERR 757 (863)
Q Consensus 696 ~Pigav~~~~-~i~~~l~-~~~~~~~~~~~~----------------T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~ 757 (863)
+++|++++++ ++++... ....+ +..+. +...+++++.++++++. .++ ++++.+...
T Consensus 319 ~~~g~l~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg---~~g-~~~~~~~~~ 392 (504)
T 2okj_A 319 LQCSAILVKEKGILQGCNQMCAGY--LFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG---TVG-FENQINKCL 392 (504)
T ss_dssp SCCEEEEESSTTHHHHHHCCCCSS--SCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH---HHH-HHHHHHHHH
T ss_pred cceEEEEEECHHHHHHHhcCCCcc--ccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh---HHH-HHHHHHHHH
Confidence 6899999876 4655321 11110 00010 11124666666665554 222 333344444
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEec---ccceEEEEEEccCCcCC-CCc-------hHHHHHHHHHHHHCCcE-EEe--c-
Q 002941 758 ILRELWDLELIQQISSHRTVQRVV---ALGTLCAIELQAAGCNA-GYG-------SLYAASLLKKLREDGVY-MRP--L- 822 (863)
Q Consensus 758 ~l~~~l~~~l~~~~~~~p~v~~vr---g~Gl~~~iel~~~~~~~-~~~-------~~~~~~l~~~l~e~GV~-~~p--~- 822 (863)
.+.+++ .+.+.+.|.+.-+. ..+.++.+......... ... ......+.+.|.++|++ +.+ .
T Consensus 393 ~~a~~l----~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~ 468 (504)
T 2okj_A 393 ELAEYL----YAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQG 468 (504)
T ss_dssp HHHHHH----HHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEET
T ss_pred HHHHHH----HHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEEC
Confidence 444443 33444555443321 34445555543211000 000 01245788899999964 432 2
Q ss_pred C--CEEEEecC-CCCcHHHHHHHHHHHHHHHHH
Q 002941 823 G--NVIYLMCG-PCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 823 g--~~lr~~pp-l~~t~eeid~~v~~L~~~l~~ 852 (863)
+ +.+|+++. ..+|++||++++++|++++++
T Consensus 469 ~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 469 DKANFFRMVISNPAATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp TEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred CceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3 47899874 778999999999999887654
No 207
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.45 E-value=9.1e-13 Score=147.63 Aligned_cols=215 Identities=13% Similarity=0.091 Sum_probs=120.0
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC---cchhhhc-
Q 002941 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL- 678 (863)
Q Consensus 603 ~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~---~~a~e~~- 678 (863)
.+++.+++ ...+..++++... ++..|.. .+.+.+++|.++|++||+++|+||++.+|+..+. .+....+
T Consensus 164 ~l~~~l~~-----~~~~~~~v~i~~p-~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~ 236 (401)
T 7aat_A 164 GAMEDISK-----IPEKSIILLHACA-HNPTGVD-PRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFI 236 (401)
T ss_dssp HHHHHHTT-----SCTTCEEEEESSS-CTTTCCC-CCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHH
T ss_pred HHHHHHHh-----CCCCcEEEEeCCC-CCCCCCC-CCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHH
Confidence 44556653 1234556666664 8888864 5788899999999999999999999998866542 2233222
Q ss_pred CCCCcE---EEeccccC-CCCCCceeeec---cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChh----
Q 002941 679 GCVPDI---ACYGKLLT-GGVIPLAATLA---TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ---- 747 (863)
Q Consensus 679 gv~PDi---vt~sKgLg-gG~~Pigav~~---~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~---- 747 (863)
+..+++ .++||.++ .| +++|++++ +++..+.+...- .......+.+.+..+++++.+.++ +.+
T Consensus 237 ~~~~~~i~~~S~sK~~~~~G-~RiG~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~ 310 (401)
T 7aat_A 237 EQGIDVVLSQSYAKNMGLYG-ERAGAFTVICRDAEEAKRVESQL--KILIRPMYSNPPMNGARIASLILN---TPELRKE 310 (401)
T ss_dssp HTTCCCEEEEECTTTSCCGG-GCEEEEEEECSSHHHHHHHHHHH--HHHHHHHHSSCCHHHHHHHHHHHH---CHHHHHH
T ss_pred hcCCcEEEEecCCccccccc-CceEEEEEEeCCHHHHHHHHHHH--HHHHHhccCCCChHHHHHHHHHhC---CHHHHHH
Confidence 334444 47899997 67 79999775 666433222100 001112223334444444444443 221
Q ss_pred ---hHHhHHHHHHHHHHHHHHHHHHHHhcCC---CeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE
Q 002941 748 ---TNHNIIPERRILRELWDLELIQQISSHR---TVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR 820 (863)
Q Consensus 748 ---l~~~l~~~~~~l~~~l~~~l~~~~~~~p---~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~ 820 (863)
..++.++..+..++.+.+.+ .++. .+......| .+..+.+. ...+...+.++||++.
T Consensus 311 ~~~~~~~~~~~~~~~r~~l~~~L----~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ll~~~gi~v~ 374 (401)
T 7aat_A 311 WLVEVKGMADRIISMRTQLVSNL----KKEGSSHNWQHITDQIGMFCFTGLK------------PEQVERLTKEFSIYMT 374 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHTTCCSCCHHHHHCCSSEEECCCC------------HHHHHHHHHHHCEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HhcCCCCCCceecCCcceEEecCCC------------HHHHHHHHHhCCEecc
Confidence 12333444444444443333 3331 122223333 33333221 2233344467899998
Q ss_pred ecCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 821 PLGNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 821 p~g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
+. +|+... .+++++|++++++|.+++
T Consensus 375 ~~---~Ris~~-~~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 375 KD---GRISVA-GVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp TT---CEEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred CC---CeEEec-cCChhhHHHHHHHHHHHh
Confidence 64 466543 355666999999998765
No 208
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.43 E-value=1.3e-11 Score=143.47 Aligned_cols=346 Identities=12% Similarity=-0.022 Sum_probs=190.2
Q ss_pred cHHHHHHHHHHHHhccc-----ccCCCCCChHHHHHHHHHHhhcC-CC-CCCeEEEeCChhhHHHHHHHHHHHHHHhhcc
Q 002941 418 QIELARDMGYTAARFGH-----VMFPENVYEPALECAELLLQGVG-KG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~-----~~~~~~~~~~~~eLae~L~~~~p-~~-~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G 490 (863)
...+.+++.+++.+... +....+..+...++++.+.+..+ .. ..+.+++++++++|+..++++.. ..|
T Consensus 103 P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~-----~~g 177 (498)
T 3ihj_A 103 PEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV-----SGG 177 (498)
T ss_dssp CHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC-----CCC
T ss_pred CHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc-----CCC
Confidence 45667888877776431 11122233556677777776542 11 13689999999999999998652 111
Q ss_pred ccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhh
Q 002941 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (863)
Q Consensus 491 ~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (863)
.. .+..|++..-+|.+...... ..|. ..+++|...
T Consensus 178 d~------------~~d~Vlv~~p~y~~~~~~~~-~~g~------------------------------~~v~~~~~~-- 212 (498)
T 3ihj_A 178 GK------------SRTGVMIPIPQYPLYSAVIS-ELDA------------------------------IQVNYYLDE-- 212 (498)
T ss_dssp GG------------GSEEEEEEESCCTHHHHHHH-HTTC------------------------------EEEEEECBG--
T ss_pred CC------------CCCEEEEeCCCchhHHHHHH-HcCC------------------------------EEEEeeccc--
Confidence 00 01478888888876543322 2110 001111000
Q ss_pred hhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEE-EEEEccccccCCCceeCCHHHHHHHHHH
Q 002941 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG-ALIIEPVVHAAGGMHMVDPLFQRILVKE 649 (863)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iA-AvIvEPViqg~gG~~~pp~~fL~~Lrel 649 (863)
...| .-| .+.+++.+.+. ....++. .+++.| ++..|.+. +.+.+++|.++
T Consensus 213 -------------~~~~--~~d--------~~~le~~l~~~---~~~~~~k~i~l~np--~NPTG~v~-s~~~l~~i~~l 263 (498)
T 3ihj_A 213 -------------ENCW--ALN--------VNELRRAVQEA---KDHCDPKVLCIINP--GNPTGQVQ-SRKCIEDVIHF 263 (498)
T ss_dssp -------------GGTT--BCC--------HHHHHHHHHHH---TTTSEEEEEEEESS--CTTTCCCC-CHHHHHHHHHH
T ss_pred -------------cccC--CCC--------HHHHHHHHHhh---hccCCCeEEEEECC--CCCCCCcC-CHHHHHHHHHH
Confidence 0000 011 24566666531 0111344 444555 78888654 67789999999
Q ss_pred HHHcCCeEEEecccccccccC--Ccchhhhc--CCC------CcEE---EeccccC--CCCCCceeee---ccHHHHHhh
Q 002941 650 CQNRKIPVIFDEVFTGFWRLG--VETTADLL--GCV------PDIA---CYGKLLT--GGVIPLAATL---ATNAVFDSF 711 (863)
Q Consensus 650 c~~~gilLI~DEV~TGfGRtG--~~~a~e~~--gv~------PDiv---t~sKgLg--gG~~Pigav~---~~~~i~~~l 711 (863)
|++||+++|+||++..+...+ ....+... +.. .+++ +|||++. .| +.+|+++ .++++++.+
T Consensus 264 a~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G-~R~G~~~~~~~~~~l~~~l 342 (498)
T 3ihj_A 264 AWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECG-YRGGYMEVINLHPEIKGQL 342 (498)
T ss_dssp HHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSS-SCCEEEEEESCCHHHHHHH
T ss_pred HHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcc-cceEEEEEecCCHHHHHHH
Confidence 999999999999997764332 12222111 111 1222 7899994 57 8999998 689999987
Q ss_pred hcCCccceeecccCCCccHHHHHHHHHHHHHhc--Ch---hhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceE
Q 002941 712 VGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK--DP---QTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL 786 (863)
Q Consensus 712 ~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~--~~---~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~ 786 (863)
... .......++++.+++.++++--+ ++ .+.+...+..+++++.. +.+.+.+.++|.+..+...|.|
T Consensus 343 ~~~-------~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~-~~l~~~L~~~~g~~~~~p~gg~ 414 (498)
T 3ihj_A 343 VKL-------LSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKA-KLTEDLFNQVPGIHCNPLQGAM 414 (498)
T ss_dssp HHH-------HHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHTSTTEECCCCCBSS
T ss_pred HHH-------HhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCcEecCCCeEE
Confidence 641 22334556777766665553100 00 11111122222222111 1233445566666655555544
Q ss_pred E-EEEEccCCc------CCCCchHHHHH-HHHHHHHCCcEEEec---C-----CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 787 C-AIELQAAGC------NAGYGSLYAAS-LLKKLREDGVYMRPL---G-----NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 787 ~-~iel~~~~~------~~~~~~~~~~~-l~~~l~e~GV~~~p~---g-----~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
+ .+.+..+.. ..... .... +...|.++||++.|. + +.+|++. ..+++++++++++|.+++
T Consensus 415 ~~~~~l~~p~~~~~~~~~~g~~--~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~--~~~~e~l~~~i~~L~~~~ 490 (498)
T 3ihj_A 415 YAFPRIFIPAKAVEAAQAHQMA--PDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTI--LPPVEKLKTVLQKVKDFH 490 (498)
T ss_dssp EECCEECCCHHHHHHHHHTTSC--HHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEEC--CSCHHHHHHHHHHHHHHH
T ss_pred EEEEeccCchhhhHHHHhcCCC--cHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEe--CCCHHHHHHHHHHHHHHH
Confidence 4 444532110 00000 1112 344566789999873 1 4788874 589999999999999999
Q ss_pred HHHHH
Q 002941 851 EEFDK 855 (863)
Q Consensus 851 ~~l~~ 855 (863)
+++.+
T Consensus 491 ~~~~~ 495 (498)
T 3ihj_A 491 INFLE 495 (498)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 209
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.42 E-value=1.5e-12 Score=148.58 Aligned_cols=253 Identities=14% Similarity=0.058 Sum_probs=150.2
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +.+++++||++|+..+++..++ .| ..||+....|++
T Consensus 78 r~~~p~~~~le~~lA~l~g~---~~~v~~~sG~~Ai~~al~al~~---------~G------------d~Vi~~~~~y~~ 133 (430)
T 3ri6_A 78 RSSNPTVEDLEQRLKNLTGA---LGVLALGSGMAAISTAILTLAR---------AG------------DSVVTTDRLFGH 133 (430)
T ss_dssp --CCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHHCC---------TT------------CEEEEETTCCHH
T ss_pred CCCCHHHHHHHHHHHHHHCC---CcEEEECCHHHHHHHHHHHHhC---------CC------------CEEEEcCCCchh
Confidence 34678889999999999884 5688889999999999986621 12 578898888887
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.......... . .|+....+|. +|
T Consensus 134 ~~~~~~~~~~--------------~-------------~G~~~~~v~~------------------------~d------ 156 (430)
T 3ri6_A 134 TLSLFQKTLP--------------S-------------FGIEVRFVDV------------------------MD------ 156 (430)
T ss_dssp HHHHHHTHHH--------------H-------------TTCEEEEECT------------------------TC------
T ss_pred HHHHHHHHHH--------------H-------------cCCEEEEeCC------------------------CC------
Confidence 5331110000 0 0000011110 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. .++.+|++|.. ++..|.+.+ +++|.++|++||++||+||+++ +|.......+
T Consensus 157 --~~~l~~ai~--------~~t~~v~~e~p-~NptG~~~d----l~~i~~la~~~g~~livD~a~~----~~~~~~~~~~ 217 (430)
T 3ri6_A 157 --SLAVEHACD--------ETTKLLFLETI-SNPQLQVAD----LEALSKVVHAKGIPLVVDTTMT----PPYLLEAKRL 217 (430)
T ss_dssp --HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHTTTCCEEEECTTS----CTTTCCGGGG
T ss_pred --HHHHHHhhC--------CCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc----ccccCChHHc
Confidence 244555553 35788999986 899998776 8899999999999999999995 2333333345
Q ss_pred CCCCcEE--EeccccCCCCCCceeeec---cHHH------------------HHhhhcCCccceeecccCCCccHHHHHH
Q 002941 679 GCVPDIA--CYGKLLTGGVIPLAATLA---TNAV------------------FDSFVGDSKLKALLHGHSYSAHALGCAA 735 (863)
Q Consensus 679 gv~PDiv--t~sKgLggG~~Pigav~~---~~~i------------------~~~l~~~~~~~~~~~~~T~~~~pla~AA 735 (863)
|. |++ +++|.++|.-..+|++++ +..+ ++..... .........+|..++.
T Consensus 218 g~--div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~-----~~~~~g~~~~~~~a~l 290 (430)
T 3ri6_A 218 GV--DIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKE-----VFQNLGPSLSPHNAYL 290 (430)
T ss_dssp TC--SEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHT-----HHHHHCCCCCHHHHHH
T ss_pred CC--EEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHH-----HHHhcCCCCCHHHHHH
Confidence 54 555 667999863133444443 2111 1111110 0011122347787777
Q ss_pred HHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec-----------------ccce-EEEEEEccCCcC
Q 002941 736 AAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV-----------------ALGT-LCAIELQAAGCN 797 (863)
Q Consensus 736 alAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr-----------------g~Gl-~~~iel~~~~~~ 797 (863)
++..++.+.. ..++..+++.++. +.++++|.|..|. |.|. |+++++...
T Consensus 291 ~l~~l~~l~~--r~~~~~~na~~la--------~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~--- 357 (430)
T 3ri6_A 291 QSLGLETMAL--RIERSCQNAQELA--------HWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESK--- 357 (430)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHH--------HHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSH---
T ss_pred HHhhhhhHHH--HHHHHHHHHHHHH--------HHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCH---
Confidence 7777776531 1234444444443 3456778777665 3466 999999732
Q ss_pred CCCchHHHHHHHHHHHHCC
Q 002941 798 AGYGSLYAASLLKKLREDG 816 (863)
Q Consensus 798 ~~~~~~~~~~l~~~l~e~G 816 (863)
..+.++...+.-.+
T Consensus 358 -----~~~~~~~~~l~~~~ 371 (430)
T 3ri6_A 358 -----EASYRFMDALKLIR 371 (430)
T ss_dssp -----HHHHHHHHHCSSSE
T ss_pred -----HHHHHHHHhCCcce
Confidence 23555666655433
No 210
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.38 E-value=1.1e-11 Score=145.60 Aligned_cols=361 Identities=11% Similarity=0.035 Sum_probs=194.0
Q ss_pred EEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh-cCCC----CCCeEEEeCChhhHHH
Q 002941 401 QFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG-VGKG----WASRAYFSDNGSTAIE 475 (863)
Q Consensus 401 ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~-~p~~----~~~~v~f~~SGSeAvE 475 (863)
.+|+.. ...++ ..|.+++++.+++....|.. +.+..+...++++.+.+. .+.+ ..+.+++++++++|+.
T Consensus 106 ~i~l~~----g~~~~-~~~~~~~al~~~~~~~~Y~~-~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~ 179 (546)
T 2zy4_A 106 SLSYVR----DQLGL-DPAAFLHEMVDGILGCNYPV-PPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMA 179 (546)
T ss_dssp HHHHHH----HTSCC-CHHHHHHHHHHHHHTCSCCS-SSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHH
T ss_pred hheccc----CCCCC-CChHHHHHHHHhhhcCCCCC-CcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHH
Confidence 455443 33466 67889999888875332221 223345566666665432 1110 1368999999999999
Q ss_pred HHHHHHH-HHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccc
Q 002941 476 IALKMAF-RKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (863)
Q Consensus 476 ~ALklA~-r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (863)
.+++... +.+ .. .| .+|++...+|++....+...+. +
T Consensus 180 ~~~~~l~~~~l---~~--~G------------d~Vlv~~P~y~~~~~~~~~~~~-----g-------------------- 217 (546)
T 2zy4_A 180 YIFESLKLNGL---LK--AG------------DKVAIGMPVFTPYIEIPELAQY-----A-------------------- 217 (546)
T ss_dssp HHHHHHHHTTS---SC--TT------------CEEEEEESCCHHHHHHHHSTTS-----C--------------------
T ss_pred HHHHHhhhhhc---CC--CC------------CEEEEeCCCCccHHHHHHHcCC-----C--------------------
Confidence 9998641 101 00 11 5799999999987654321110 0
Q ss_pred ccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE-EEccccccCC
Q 002941 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL-IIEPVVHAAG 633 (863)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAv-IvEPViqg~g 633 (863)
...+++|... ...|. -| .+.+++.+ ..++.+| ++.| ++..
T Consensus 218 ----~~~~~v~~~~---------------~~~~~--~d--------~~~l~~~~--------~~~~k~v~l~~p--~NPt 258 (546)
T 2zy4_A 218 ----LEEVAINADP---------------SLNWQ--YP--------DSELDKLK--------DPAIKIFFCVNP--SNPP 258 (546)
T ss_dssp ----CEEEEEECBG---------------GGTTB--CC--------HHHHGGGG--------STTEEEEEEESS--CSSS
T ss_pred ----cEEEEEecCc---------------ccCCC--CC--------HHHHHHhh--------CCCCeEEEEECC--CCCC
Confidence 0001111000 00000 11 12233322 1234444 4555 8898
Q ss_pred CceeCCHHHHHHHHHHH--HHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccC-CCCCCceeeeccHH-HHH
Q 002941 634 GMHMVDPLFQRILVKEC--QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNA-VFD 709 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc--~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLg-gG~~Pigav~~~~~-i~~ 709 (863)
|.+. +.+.+++|.++| ++||+++|+||++..|+..+........+....+.+|||.+| .| +++|+++++++ +++
T Consensus 259 G~~~-~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~~l~~ 336 (546)
T 2zy4_A 259 SVKM-DQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATG-WRLGVVAAHQQNVFD 336 (546)
T ss_dssp CBCC-CHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGG-GCEEEEEEESSCHHH
T ss_pred CccC-CHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCC-cceEEEEECCHHHHH
Confidence 8554 677899999999 889999999999998864322221111111122447899996 67 89999999875 777
Q ss_pred hhhcCC----------ccc--------------------eeecccCCCccHHHHHH-HHH-HHHHhcC-hhhHHhHHHHH
Q 002941 710 SFVGDS----------KLK--------------------ALLHGHSYSAHALGCAA-AAK-SIKWFKD-PQTNHNIIPER 756 (863)
Q Consensus 710 ~l~~~~----------~~~--------------------~~~~~~T~~~~pla~AA-alA-aL~~l~~-~~l~~~l~~~~ 756 (863)
.+...- ... .+....+.+.+.++.++ ++. ...++++ +.+.+++++..
T Consensus 337 ~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~~~~r~~~ 416 (546)
T 2zy4_A 337 LALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLI 416 (546)
T ss_dssp HHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 653110 000 00012223444444443 322 2233433 34444444443
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC---cCCCCch------HHHHHHHHHHHHCCcEEEec-----
Q 002941 757 RILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG---CNAGYGS------LYAASLLKKLREDGVYMRPL----- 822 (863)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~---~~~~~~~------~~~~~l~~~l~e~GV~~~p~----- 822 (863)
+..++.+ .+.+. .+.......-|+++.+++..-. ....+.. .....+.+.+.++||.+.|+
T Consensus 417 ~~r~~~l----~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~ 491 (546)
T 2zy4_A 417 RRRETTL----YRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGS 491 (546)
T ss_dssp HHHHHHH----HGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTC
T ss_pred HHHHHHH----HHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCccccCC
Confidence 3333322 22222 2211112245666677764200 0000000 01234667788999999984
Q ss_pred -CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 002941 823 -GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 856 (863)
Q Consensus 823 -g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~~ 856 (863)
.+.+|+... ..+++++++++++|.++++++.+.
T Consensus 492 ~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~~~~ 525 (546)
T 2zy4_A 492 NRPSGRASLA-NLNEYEYAAIGRALRKMADELYAE 525 (546)
T ss_dssp SSCEEEEESS-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEec-cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 257998754 458999999999999998877643
No 211
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.34 E-value=1.7e-10 Score=132.03 Aligned_cols=342 Identities=11% Similarity=-0.022 Sum_probs=183.8
Q ss_pred CcHHHHHHHHHHHHhcccccCCCC--CChHHHHHHHHHHhhcCCCCCC-----eEEEeCChhhHHHHHHHHHHHHHHh--
Q 002941 417 LQIELARDMGYTAARFGHVMFPEN--VYEPALECAELLLQGVGKGWAS-----RAYFSDNGSTAIEIALKMAFRKFSF-- 487 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~--~~~~~~eLae~L~~~~p~~~~~-----~v~f~~SGSeAvE~ALklA~r~~~~-- 487 (863)
.+|.+.+++.+.+.+..... ..+ ..+...++.++|+++++.+ .+ .++|+++|+||+..|++.++..+..
T Consensus 54 ~~~~v~e~~~~a~~~~~~~~-~~~~~~~~l~~~~~~~la~l~g~~-~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~ 131 (452)
T 2dgk_A 54 DDENVHKLMDLSINKNWIDK-EEYPQSAAIDLRCVNMVADLWHAP-APKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRM 131 (452)
T ss_dssp CCHHHHHHHHHTTTCBTTCT-TTCHHHHHHHHHHHHHHHHHTTCC-CCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCCh-hhChhHHHHHHHHHHHHHHHhCCC-cccccCCceEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 46888888887775432211 111 1233456667778877743 22 3899999999999999988432211
Q ss_pred -hccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcc
Q 002941 488 -DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (863)
Q Consensus 488 -~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ 566 (863)
..|.. + .+..||+.. +|-....+....|.. +..++...
T Consensus 132 ~~~G~~-~----------~~~~vi~~~--~h~~~~~~~~~~G~~----------------------------v~~v~~~~ 170 (452)
T 2dgk_A 132 EAAGKP-T----------DKPNLVCGP--VQICWHKFARYWDVE----------------------------LREIPMRP 170 (452)
T ss_dssp HHTTCC-C----------SCCEEEESS--CCHHHHHHHHHTTCE----------------------------EEECCCBT
T ss_pred HhcCCC-C----------CCcEEEECC--CcHHHHHHHHHcCce----------------------------EEEEecCC
Confidence 01210 0 014566655 675544333222100 01111100
Q ss_pred -hhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHH
Q 002941 567 -WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (863)
Q Consensus 567 -~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~ 645 (863)
.+ .-| .+.|++.+. .+..+.+++.| .+..|.+.+ +++
T Consensus 171 ~~~---------------------~~d--------~~~l~~~i~-------~~t~~v~~~~~--~n~tG~~~~----l~~ 208 (452)
T 2dgk_A 171 GQL---------------------FMD--------PKRMIEACD-------ENTIGVVPTFG--VTYTGNYEF----PQP 208 (452)
T ss_dssp TBC---------------------SCC--------HHHHHHHCC-------TTEEEEECBBS--CTTTCBBCC----HHH
T ss_pred CCC---------------------eEC--------HHHHHHHHh-------hCCEEEEEEcC--CcCCcccCC----HHH
Confidence 00 011 245666653 23344455566 467787766 999
Q ss_pred HHHHHHHc------CCeEEEecccccccc---cCC-cchhhhcCCCCcEEEec--cccCCCCCCceeeeccHH-HH-Hhh
Q 002941 646 LVKECQNR------KIPVIFDEVFTGFWR---LGV-ETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNA-VF-DSF 711 (863)
Q Consensus 646 Lrelc~~~------gilLI~DEV~TGfGR---tG~-~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~-i~-~~l 711 (863)
|.++|++| |+++++||++.++.. .+. .+.++. ...|.++++ |.+.+| ..+|+++++++ +. +.+
T Consensus 209 I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~hK~~~~~-~~~G~~~~~~~~~~~~~~ 285 (452)
T 2dgk_A 209 LHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRL--PRVKSISASGHKFGLAP-LGCGWVIWRDEEALPQEL 285 (452)
T ss_dssp HHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTTTCCC-SSCEEEEESSGGGSCGGG
T ss_pred HHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCC--CCCcEEEECcccccCCC-CCeEEEEEcCHHHHHHHh
Confidence 99999996 999999999977532 111 111111 135777764 866566 68899998643 33 433
Q ss_pred hcCCcc-ceeecccC--CCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-c----cc
Q 002941 712 VGDSKL-KALLHGHS--YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-V----AL 783 (863)
Q Consensus 712 ~~~~~~-~~~~~~~T--~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-r----g~ 783 (863)
.....+ .......+ ++......++..++++.+..+. +++..+....+++++ .+.+.+.+.+.-+ . ..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g-~~~~~~~~~~~a~~l----~~~L~~~~~~~~~~~~~~~~~ 360 (452)
T 2dgk_A 286 VFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREG-YTKVQNASYQVAAYL----ADEIAKLGPYEFICTGRPDEG 360 (452)
T ss_dssp CEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH----HHHHHTTSSEEEEEECCTTTB
T ss_pred ccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHH----HHHHHhCCCeEEecCCCCCCC
Confidence 210000 00000001 1111112233334454443332 233344444444444 3344555543322 1 34
Q ss_pred ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe----c----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 784 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----L----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 784 Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p----~----g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
..++.+.+.... .... ....+.+.|.++|++++. . ...+|++....+|++++|.+++.|+++++.+.+
T Consensus 361 ~~~v~f~~~~~~-~~~~---~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~~ 436 (452)
T 2dgk_A 361 IPAVCFKLKDGE-DPGY---TLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD 436 (452)
T ss_dssp SSEEEEEECTTC-CCSC---CHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEecCcc-cccC---CHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 567777775321 0000 135788899999996542 1 247999877778999999999999999887654
No 212
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.33 E-value=3.2e-11 Score=135.20 Aligned_cols=205 Identities=13% Similarity=0.059 Sum_probs=128.7
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIP 697 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~P 697 (863)
+.+|++... ++..|.+.+ +++|.++ ||+++|+||+++.+.+. ...+ .+|+++++ |.++.+ --
T Consensus 166 ~~~v~~~~~-~nptG~~~~----~~~i~~~---~~~~vivD~a~~~~~~~---~~~~----~~di~~~s~sK~~~~~-gg 229 (398)
T 2fyf_A 166 VDVIAWAHN-ETSTGVAVA----VRRPEGS---DDALVVIDATSGAGGLP---VDIA----ETDAYYFAPQKNFASD-GG 229 (398)
T ss_dssp CSEEEEESE-ETTTTEECC----CCCCTTC---C-CEEEEECTTTTTTSC---CCGG----GCSEEEECTTSTTCSC-SS
T ss_pred CCEEEEeCc-CCCcceecc----hHHhhhh---cCCeEEEEeccccCCcc---cCcc----cCcEEEEecCcccCCC-Cc
Confidence 445655554 788898877 3334444 99999999999644321 1111 27888765 988765 23
Q ss_pred ceeeeccHHHHHhhhcC-------Cccce-------eecccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 002941 698 LAATLATNAVFDSFVGD-------SKLKA-------LLHGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILREL 762 (863)
Q Consensus 698 igav~~~~~i~~~l~~~-------~~~~~-------~~~~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~ 762 (863)
+|++++++++++.+... ..... +..+.++ +.+..+++++.++|+.+.+.+..+++.+..+.+++.
T Consensus 230 ~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~ 309 (398)
T 2fyf_A 230 LWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQR 309 (398)
T ss_dssp EEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred eEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 78899999998876310 00000 0012333 456677788888898775443234455555555555
Q ss_pred HHHHHHHHHhcCCCeeEe---c-cc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCC
Q 002941 763 WDLELIQQISSHRTVQRV---V-AL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGP 832 (863)
Q Consensus 763 l~~~l~~~~~~~p~v~~v---r-g~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl 832 (863)
+.+. +++.|.+.-+ . +. +.++.+.+.... ...++.+.|.++||.+++. ++.+|+.+..
T Consensus 310 l~~~----L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~ 377 (398)
T 2fyf_A 310 LYSW----AQERPYTTPFVTDPGLRSQVVGTIDFVDDV--------DAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFP 377 (398)
T ss_dssp HHHH----HHHSTTEEESCCSGGGBCSSEEEEEECTTS--------CHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCT
T ss_pred HHHH----HHHcCCceeccCChhhcCCcEEEEECCCCC--------CHHHHHHHHHHCCcEEecCcccCCCCEEEEEecC
Confidence 5433 3334433222 1 22 347888874321 1567889999999999753 3789999887
Q ss_pred CCcHHHHHHHHHHHHHHHHH
Q 002941 833 CSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 833 ~~t~eeid~~v~~L~~~l~~ 852 (863)
.++++|+++++++|++++++
T Consensus 378 ~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 378 AVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp TSCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999988754
No 213
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.32 E-value=7.1e-12 Score=137.78 Aligned_cols=202 Identities=13% Similarity=0.044 Sum_probs=128.5
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVI 696 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~ 696 (863)
++.+|++... ++..|.+.+ +|+++||+++|+||+|+.+.+. .....+ |++++ +|.++. .
T Consensus 141 ~~k~v~~~~~-~nptG~~~~---------~i~~~~~~~li~D~a~~~~~~~---~~~~~~----di~~~s~sK~~~~--~ 201 (360)
T 1w23_A 141 NDAYLHITSN-NTIYGTQYQ---------NFPEINHAPLIADMSSDILSRP---LKVNQF----GMIYAGAQKNLGP--S 201 (360)
T ss_dssp TEEEEEEESE-ETTTTEECS---------SCCCCCSSCEEEECTTTTTSSC---CCGGGC----SEEEEETTTTTSC--T
T ss_pred CCCEEEEeCC-CCCcceecc---------cccccCCceEEEechhhcCCCC---cCcccC----CEEEEEcccccCC--C
Confidence 4667777775 899998764 3344899999999999644221 112222 77755 598863 2
Q ss_pred CceeeeccHHHHHhhhcCCccceee------cccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHH
Q 002941 697 PLAATLATNAVFDSFVGDSKLKALL------HGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQ 769 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~~------~~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~ 769 (863)
.+|++++++++++.+..... ..+. .+.++ +.++.+++++.++++.+++.+..+++.+..+.+++.+.+.
T Consensus 202 G~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~--- 277 (360)
T 1w23_A 202 GVTVVIVKKDLLNTKVEQVP-TMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDT--- 277 (360)
T ss_dssp TCEEEEEEHHHHCSCCTTCC-GGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH---
T ss_pred CcEEEEEcHHHHhhcccCCc-chhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH---
Confidence 47899999998876543110 0000 12333 3466777788888887754323444555555555544333
Q ss_pred HHhcCCCe-eEe--c-c-cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHH
Q 002941 770 QISSHRTV-QRV--V-A-LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQ 841 (863)
Q Consensus 770 ~~~~~p~v-~~v--r-g-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~ 841 (863)
+.+.+.+ ... . + .+.++.+.+... ....++.+.|.++||.+.+. .+.+|+.+...++++++++
T Consensus 278 -L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~ 348 (360)
T 1w23_A 278 -IDESNGFYVGHAEKGSRSLMNVTFNLRNE--------ELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIA 348 (360)
T ss_dssp -HHTTTTSSEESSCGGGBCSSEEEEECSSH--------HHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHH
T ss_pred -HHHccCcccccCCchhccCcEEEEEcCCC--------ccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHH
Confidence 3344422 211 2 2 245777776431 13567888899999999875 2689999888889999999
Q ss_pred HHHHHHHHHHH
Q 002941 842 LLLKLYQRLEE 852 (863)
Q Consensus 842 ~v~~L~~~l~~ 852 (863)
++++|++++++
T Consensus 349 ~~~~l~~~~~~ 359 (360)
T 1w23_A 349 LRELMIQFKEN 359 (360)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999887653
No 214
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.30 E-value=2.6e-11 Score=137.77 Aligned_cols=287 Identities=12% Similarity=0.054 Sum_probs=169.9
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +.+++++||++|+..+++..++ .| .+||+....|||
T Consensus 78 r~~~p~~~~le~~lA~l~g~---~~~i~~ssGt~Ai~~al~~l~~---------~G------------d~Vi~~~~~y~~ 133 (415)
T 2fq6_A 78 RRGTLTHFSLQQAMCELEGG---AGCVLFPCGAAAVANSILAFIE---------QG------------DHVLMTNTAYEP 133 (415)
T ss_dssp TTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHTTCC---------TT------------CEEEEETTSCHH
T ss_pred CCCCchHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHHhC---------CC------------CEEEEeCCCchH
Confidence 35678889999999999874 4677779999999999875421 12 578988888887
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.. ..+.-. . ...+ +....+|. .|
T Consensus 134 ~~-~~~~~~----l---------~~~G-------------~~v~~v~~------------------------~d------ 156 (415)
T 2fq6_A 134 SQ-DFCSKI----L---------SKLG-------------VTTSWFDP------------------------LI------ 156 (415)
T ss_dssp HH-HHHHHT----G---------GGGT-------------CEEEEECT------------------------TC------
T ss_pred HH-HHHHHH----H---------HHcC-------------cEEEEECC------------------------CC------
Confidence 42 111100 0 0000 00000010 01
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHH--cCCeEEEecccccccccCCcchhh
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGVETTAD 676 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~--~gilLI~DEV~TGfGRtG~~~a~e 676 (863)
.+.+++.+. .++.+|++|.+ ++..|.+.+ +++|.++|++ ||++||+||+|. .+..+...
T Consensus 157 --~~~le~ai~--------~~tklV~~e~~-~NptG~v~d----l~~I~~la~~~~~g~~livD~a~a-~~~~~~p~--- 217 (415)
T 2fq6_A 157 --GADIVKHLQ--------PNTKIVFLESP-GSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWA-AGVLFKAL--- 217 (415)
T ss_dssp --GGGGGGGCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSSCGG---
T ss_pred --HHHHHHhhc--------cCCcEEEEECC-CCCCCEeec----HHHHHHHHHhhcCCCEEEEECCCc-ccccCCcc---
Confidence 012333331 24678888987 899998876 8999999999 999999999995 22222222
Q ss_pred hcCCCCcEE--EeccccCCCC-CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHH
Q 002941 677 LLGCVPDIA--CYGKLLTGGV-IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (863)
Q Consensus 677 ~~gv~PDiv--t~sKgLggG~-~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~ 753 (863)
....|++ +++|.++++- ..+|++++++++++.+.... .......+|..++.++..++.+. ...++..
T Consensus 218 --~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~------~~~G~~~~~~~a~~~~~~l~~l~--~r~~~~~ 287 (415)
T 2fq6_A 218 --DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA------YLMGQMVDADTAYITSRGLRTLG--VRLRQHH 287 (415)
T ss_dssp --GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH------HHTTCCCCHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred --ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHH------HhcCCCCCHHHHHHHHhhhhHHH--HHHHHHH
Confidence 2346888 4689998632 34688888888777665311 11112346777776666676542 1234445
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHC
Q 002941 754 PERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED 815 (863)
Q Consensus 754 ~~~~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~ 815 (863)
++...+.++| .++|.+..+ ++.|.++.+++.... ....+..+...+.-.
T Consensus 288 ~n~~~l~~~L--------~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~-----~~~~~~~~l~~l~~~ 354 (415)
T 2fq6_A 288 ESSLKVAEWL--------AEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKL-----NNEELANYLDNFSLF 354 (415)
T ss_dssp HHHHHHHHHH--------HTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCC-----CHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHH--------HcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCC-----CHHHHHHHHHhCCcC
Confidence 5555555433 344443332 256889999996420 001233333333211
Q ss_pred Cc----------EEE--e--------------cCCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 816 GV----------YMR--P--------------LGNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 816 GV----------~~~--p--------------~g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
++ ... | .++.+|++.-.-.++++|+.+.++|++
T Consensus 355 ~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 355 SMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp EECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred eEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 11 111 1 137899998888888888888877754
No 215
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.30 E-value=5.7e-10 Score=129.72 Aligned_cols=217 Identities=12% Similarity=0.042 Sum_probs=124.0
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc------CCeEEEecccccccc---cCC-cchhhhcCCCCcEEEe-
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR------KIPVIFDEVFTGFWR---LGV-ETTADLLGCVPDIACY- 687 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~------gilLI~DEV~TGfGR---tG~-~~a~e~~gv~PDivt~- 687 (863)
....+++.| .+..|.+.+ +++|.++|++| |++|++|+++.|+.. .+. .+.+.. ...|.+++
T Consensus 203 t~~v~~~~~--~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~--~~~D~v~~s 274 (502)
T 3hbx_A 203 TICVAAILG--STLNGEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRL--PLVKSINVS 274 (502)
T ss_dssp EEEEEEEBS--CTTTCCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEE
T ss_pred CEEEEEecC--CCCCCcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCC--CCceEEEEC
Confidence 344445566 466787766 99999999999 999999999976531 111 111111 13577654
Q ss_pred -ccccCCCCCCceeeecc-HHHH-HhhhcCCcc---ceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 002941 688 -GKLLTGGVIPLAATLAT-NAVF-DSFVGDSKL---KALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRE 761 (863)
Q Consensus 688 -sKgLggG~~Pigav~~~-~~i~-~~l~~~~~~---~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~ 761 (863)
.|.+.++ ..+|+++++ ++.+ +.+.....+ ........++.....+++..++|..+..+++.+ ..++...+.+
T Consensus 275 ~hK~l~~p-~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~-~~~~~~~~a~ 352 (502)
T 3hbx_A 275 GHKYGLVY-AGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRN-VMENCRENMI 352 (502)
T ss_dssp TTTTTCCC-SSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred cccccCCC-CCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4776555 567777765 3433 222110000 000011112222334445555555553333322 2222223333
Q ss_pred HHHHHHHHHHhcCCCeeEecc--cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe----c----CCEEEEecC
Q 002941 762 LWDLELIQQISSHRTVQRVVA--LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----L----GNVIYLMCG 831 (863)
Q Consensus 762 ~l~~~l~~~~~~~p~v~~vrg--~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p----~----g~~lr~~pp 831 (863)
+| .+.+.+.+.+.-+.. ...++.+.+.... . .....+.+.|.++|+++.. . ...+|+...
T Consensus 353 ~l----~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~---~---~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~ 422 (502)
T 3hbx_A 353 VL----REGLEKTERFNIVSKDEGVPLVAFSLKDSS---C---HTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIR 422 (502)
T ss_dssp HH----HHHHHTTTCEEECSCSSSSSEEEEEESSCS---S---CCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECC
T ss_pred HH----HHHHHhCCCEEEEeCCCCceEEEEEecCCC---c---CCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeC
Confidence 33 334455664433322 4457777775421 0 0134788999999998642 1 157999988
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 832 PCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 832 l~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
..+|+++++.+++.|+++++++.+
T Consensus 423 ~~~t~edid~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 423 EDFSRTLAERLVIDIEKVMRELDE 446 (502)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 888999999999999999987754
No 216
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.27 E-value=1.8e-09 Score=125.72 Aligned_cols=239 Identities=10% Similarity=0.021 Sum_probs=126.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv- 680 (863)
+.|++.+++. ...+....+|++.-. .+..|.+-+ +++|.++|++||++|++|+++.|.-.....+.....|+
T Consensus 233 ~~Le~~i~~~--~~~g~~~~~vv~~~~-~~~~G~vd~----l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~ 305 (511)
T 3vp6_A 233 ADFEAKILEA--KQKGYVPFYVNATAG-TTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIE 305 (511)
T ss_dssp HHHHHHHHHH--HHTTCEEEEEEEEBS-CSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGG
T ss_pred HHHHHHHHHH--HhcCCCcEEEEEecC-CCCCccccc----HHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCc
Confidence 4455566430 011223566666654 678887765 99999999999999999999965422222222222243
Q ss_pred CCcEEEe--ccccCCCCCCceeeeccH-HHHHhhhcCCccceeecc-----------cCC-CccHHHHHHHHHHHHHhcC
Q 002941 681 VPDIACY--GKLLTGGVIPLAATLATN-AVFDSFVGDSKLKALLHG-----------HSY-SAHALGCAAAAKSIKWFKD 745 (863)
Q Consensus 681 ~PDivt~--sKgLggG~~Pigav~~~~-~i~~~l~~~~~~~~~~~~-----------~T~-~~~pla~AAalAaL~~l~~ 745 (863)
..|.+++ .|.+++. .-.|+++++. ++.+.........-+... .+. .+.+..+.+..++|+.+..
T Consensus 306 ~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~ 384 (511)
T 3vp6_A 306 RANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGT 384 (511)
T ss_dssp GCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHH
T ss_pred cCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhH
Confidence 5698876 5988765 4567777654 444433211000000000 011 1112223334444554422
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec---ccceEEEEEEccCCcCCC-Cc-------hHHHHHHHHHHHH
Q 002941 746 PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV---ALGTLCAIELQAAGCNAG-YG-------SLYAASLLKKLRE 814 (863)
Q Consensus 746 ~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr---g~Gl~~~iel~~~~~~~~-~~-------~~~~~~l~~~l~e 814 (863)
+. .+++.++...+.+++ .+.+++.|.+.-+. ....++.+.+.....+.. .. .....++.+.|++
T Consensus 385 ~g-l~~~~~~~~~~a~~l----~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~ 459 (511)
T 3vp6_A 385 VG-FENQINKCLELAEYL----YAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMME 459 (511)
T ss_dssp HH-HHHHHHHHHHHHHHH----HHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHH----HHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHh
Confidence 22 223333333333333 23344555543332 344455555543221100 00 1124468889999
Q ss_pred CCcEEEe----cC--CEEEEec-CCCCcHHHHHHHHHHHHHHHHHH
Q 002941 815 DGVYMRP----LG--NVIYLMC-GPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 815 ~GV~~~p----~g--~~lr~~p-pl~~t~eeid~~v~~L~~~l~~l 853 (863)
+|+++.. .+ +.+|+.. +..++++||+.+++.|++.-+.+
T Consensus 460 ~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~ 505 (511)
T 3vp6_A 460 SGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 505 (511)
T ss_dssp HTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred cCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 9975532 12 3689987 67789999999999998876554
No 217
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.25 E-value=6.2e-10 Score=127.67 Aligned_cols=203 Identities=14% Similarity=0.007 Sum_probs=119.6
Q ss_pred cEEEE-EEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhcCCCCcEEEe--ccccCCC
Q 002941 619 CIGAL-IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACY--GKLLTGG 694 (863)
Q Consensus 619 ~iAAv-IvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PDivt~--sKgLggG 694 (863)
++.+| +.-| .+..|.+.+ +++|.++|++||+++++||++.++. .|. ......+...+|++++ .|.++++
T Consensus 231 ~~~~vv~~~~--nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~-~g~~~~~~~~~~~~~D~~~~s~hK~~~~p 303 (456)
T 2z67_A 231 NRPCVLSTLT--FFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQN-NYYLEKLKKAFKYRVDAVVSSSDKNLLTP 303 (456)
T ss_dssp CCEEEEEESS--CCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC-HHHHHHHHHHHTSCCSEEEEEHHHHHCCC
T ss_pred CeEEEEEeCC--CCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHH-HHhhHHHHHhhCCCCCEEEEcCCCCcCCC
Confidence 34444 4555 467787766 8999999999999999999986552 221 1111112116898876 6987776
Q ss_pred CCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 695 VIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 695 ~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
..+|++++ ++++++.+... ..+.. .+++ ..++.+++..+..++ .+++.+....+.+++.+.+.+...+
T Consensus 304 -~g~G~l~~~~~~~~~~l~~~------~~g~~-~~~~--~~~~~aal~~l~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~ 372 (456)
T 2z67_A 304 -IGGGLVYSTDAEFIKEISLS------YPGRA-SATP--VVNTLVSLLSMGSKN-YLELVKNQKNSKKLLDELLNDLSKK 372 (456)
T ss_dssp -SSCEEEEESCHHHHHHHHTT------SCSCB-CSHH--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCeEEEEEcCHHHHhhcCcC------CCCCC-CCCH--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 68899999 57787776431 12222 2333 334445555543322 3444555555555555554443211
Q ss_pred CC-CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCc---EEE------------e-cCCEEEEecCCCCcH
Q 002941 774 HR-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGV---YMR------------P-LGNVIYLMCGPCSSP 836 (863)
Q Consensus 774 ~p-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV---~~~------------p-~g~~lr~~ppl~~t~ 836 (863)
.+ .+... . .++.+.+..+. ...++.+.|.++|+ -+. . ..+.+|++....+|+
T Consensus 373 ~g~~v~~~--~-~~v~~~~~~~~--------~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~ 441 (456)
T 2z67_A 373 TGGKFLDV--E-SPIASCISVNS--------DPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRT 441 (456)
T ss_dssp SSCCBCCC--C-CSSEEEEECSS--------CHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCH
T ss_pred cCCEecCC--C-CeEEEEEeccc--------HHHHHHHHHHHcCCCcceEEeecCccccccccccCcchhhhhhhcCCCH
Confidence 11 11111 1 34444542121 13567888999986 222 1 136788887778899
Q ss_pred HHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRL 850 (863)
Q Consensus 837 eeid~~v~~L~~~l 850 (863)
++||+++++|++++
T Consensus 442 eeid~~l~~L~~~~ 455 (456)
T 2z67_A 442 EDIVNSVSKLEKIL 455 (456)
T ss_dssp HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999997654
No 218
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.25 E-value=3.3e-10 Score=131.14 Aligned_cols=183 Identities=14% Similarity=0.057 Sum_probs=111.3
Q ss_pred HHHHHHHHHHcCCeEEEecccc-cccccCCc-chhhhcCCCCcEE--EeccccCCCCCCceeeeccHH------------
Q 002941 643 QRILVKECQNRKIPVIFDEVFT-GFWRLGVE-TTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNA------------ 706 (863)
Q Consensus 643 L~~Lrelc~~~gilLI~DEV~T-GfGRtG~~-~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~~~------------ 706 (863)
+++|+++|++||++|++|++|. |+.-.|.. ..++ ..|++ +++|+|+| ...|+++++++
T Consensus 220 l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~----~aDiv~~S~hK~l~G--p~GG~i~~~~~~~~~~~~~~~~~ 293 (490)
T 2a7v_A 220 YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIVTTTTHKTLRG--ARSGLIFYRKGVKAVDPKTGREI 293 (490)
T ss_dssp HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG----TCSEEEEESSGGGCS--CSCEEEEEECSEEEEETTTEEEE
T ss_pred HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC----CCCEEEECCcccCcc--ccchheeeccchhcccccccchh
Confidence 8999999999999999999984 32122221 1111 25877 45899965 35677887764
Q ss_pred ---HHHhhhcCCccceeecccCCC-ccHHHHHHHHHHHHHhcCh---hhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE
Q 002941 707 ---VFDSFVGDSKLKALLHGHSYS-AHALGCAAAAKSIKWFKDP---QTNHNIIPERRILRELWDLELIQQISSHRTVQR 779 (863)
Q Consensus 707 ---i~~~l~~~~~~~~~~~~~T~~-~~pla~AAalAaL~~l~~~---~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~ 779 (863)
+.+.++. ....++.+ .++..+++..+++..+.++ ++.+++.++.+++.+.|.+ .+. .-
T Consensus 294 ~~~l~~~i~~------~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~--------~G~-~v 358 (490)
T 2a7v_A 294 PYTFEDRINF------AVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE--------RGY-SL 358 (490)
T ss_dssp ECCCHHHHHH------HHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH--------TTC-EE
T ss_pred hHHHHHHHHH------HhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH--------cCc-EE
Confidence 3344332 11222333 3455555555566665443 3455666666666664422 221 11
Q ss_pred ec-ccc-eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe----c------CCEEEEecCC----CCcHHHHHHHH
Q 002941 780 VV-ALG-TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----L------GNVIYLMCGP----CSSPEVCSQLL 843 (863)
Q Consensus 780 vr-g~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p----~------g~~lr~~ppl----~~t~eeid~~v 843 (863)
+. +.. .++.+.+.... . ....+.+.|.+.||.+.. . ...+|+..|. .++++|+++++
T Consensus 359 ~~~~t~t~lv~vdl~~~g----~---~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~ 431 (490)
T 2a7v_A 359 VSGGTDNHLVLVDLRPKG----L---DGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVV 431 (490)
T ss_dssp GGGSCSSSEEEEECTTTT----C---CHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHH
T ss_pred ecCCCCCeEEEEEeCCCC----C---CHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHH
Confidence 11 222 45666665321 0 145677888899999973 1 2689995544 36899999999
Q ss_pred HHHHHHHHHH
Q 002941 844 LKLYQRLEEF 853 (863)
Q Consensus 844 ~~L~~~l~~l 853 (863)
+.|.+++...
T Consensus 432 ~~i~~~l~~~ 441 (490)
T 2a7v_A 432 DFIDEGVNIG 441 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 219
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.25 E-value=1.4e-10 Score=134.08 Aligned_cols=213 Identities=14% Similarity=0.061 Sum_probs=123.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc-cccccCCc-chhhhcC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVE-TTADLLG 679 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T-GfGRtG~~-~a~e~~g 679 (863)
+.+++.+.+ .+..+|++ .. .+.+ .+. + +++|+++|++||++||+||+|. |+-..|.. ..+.
T Consensus 183 d~le~~i~~-------~~tklIi~-~~-sn~~-~~~-d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~--- 245 (483)
T 1rv3_A 183 DRLEENARL-------FHPKLIIA-GT-SCYS-RNL-D---YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE--- 245 (483)
T ss_dssp HHHHHHHHH-------HCCSEEEE-CC-SSCC-SCC-C---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG---
T ss_pred HHHHHHHhh-------cCCcEEEE-eC-CcCC-CcC-C---HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC---
Confidence 456666642 12346666 43 4554 333 3 8999999999999999999985 33112211 1111
Q ss_pred CCCcEEEe--ccccCCCCCCceeeeccHH---------------HHHhhhcCCccceeecccCCCccHHHHHHHHHHHHH
Q 002941 680 CVPDIACY--GKLLTGGVIPLAATLATNA---------------VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKW 742 (863)
Q Consensus 680 v~PDivt~--sKgLggG~~Pigav~~~~~---------------i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~ 742 (863)
..|++++ +|+|+| .+.|+++++++ +.+.+... ...+...+.+...+++..++++.
T Consensus 246 -~~div~~s~~K~l~G--prgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~-----~~~~~~g~~~~~~iaal~~Al~~ 317 (483)
T 1rv3_A 246 -HCHVVTTTTHKTLRG--CRAGMIFYRRGVRSVDPKTGKEILYNLESLINSA-----VFPGLQGGPHNHAIAGVAVALKQ 317 (483)
T ss_dssp -TCSEEEEESSGGGCC--CSCEEEEEECSBCC-------CCBCCHHHHHHHH-----HTTTTCCSCCHHHHHHHHHHHHH
T ss_pred -CCcEEEecCcccCCC--CCceEEEEcchhhhhccccCcchhhHHHHHhhhh-----cCCcccCCccHHHHHHHHHHHHH
Confidence 3688865 599965 46788888875 22322210 01111223345556666677877
Q ss_pred hcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc-cc-eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE
Q 002941 743 FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-LG-TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR 820 (863)
Q Consensus 743 l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~ 820 (863)
+.++++ +...+....+++.+.+.|. +.+ +.-+.+ .+ .++.+.+.... . ....+.+.|.+.||.+.
T Consensus 318 ~~~~~~-~~~~~~~~~~~~~l~~~L~----~~g-~~~~~~~~~~~~~~v~~~~~g----~---~~~~~~~~L~~~gI~v~ 384 (483)
T 1rv3_A 318 AMTPEF-KEYQRQVVANCRALSAALV----ELG-YKIVTGGSDNHLILVDLRSKG----T---DGGRAEKVLEACSIACN 384 (483)
T ss_dssp HTSHHH-HHHHHHHHHHHHHHHHHHH----HTT-CEEGGGSCSSSEEEEEGGGGT----C---CHHHHHHHHHHTTEECE
T ss_pred HhChhH-HHHHHHHHHHHHHHHHHHH----hcC-CEeccCCCCCceEEEeccCCC----C---CHHHHHHHHHhCCcEEe
Confidence 655432 3333333444444433332 222 211222 12 35556664321 0 13456778889999998
Q ss_pred ----ec------CCEEEEecCCCCc----HHHHHHHHHHHHHHHHH
Q 002941 821 ----PL------GNVIYLMCGPCSS----PEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 821 ----p~------g~~lr~~ppl~~t----~eeid~~v~~L~~~l~~ 852 (863)
|. ...+|+..+..+| ++|+++++++|.++++.
T Consensus 385 ~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 385 KNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp EECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 53 2589998776556 99999999999998876
No 220
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.24 E-value=2.3e-10 Score=128.07 Aligned_cols=314 Identities=11% Similarity=0.060 Sum_probs=180.6
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHH-HhhcCCCCCCeEEEeCChhhHHHHHHHHH-HHHHHhhcccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELL-LQGVGKGWASRAYFSDNGSTAIEIALKMA-FRKFSFDHEVLVD 494 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L-~~~~p~~~~~~v~f~~SGSeAvE~ALklA-~r~~~~~~G~~tg 494 (863)
..|++.+|+.+.++...+. ...+...+|.+++ +++++. .+.+++++||++|+..|++.+ ++ .|
T Consensus 14 ~~~~i~~a~~~~~~~~~~~----~~~~~~~~l~~~~~a~~~g~--~~~~v~~~sgt~al~~al~~l~~~---------~G 78 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHIYT----NYGPINQRFEQTIMSGFFQN--RGAVTTVANATLGLMAAIQLKKRK---------KG 78 (377)
T ss_dssp CGGGGHHHHHHHHHHTCCS----SSCHHHHHHHHHHHHHTSTT--CSEEEEESCHHHHHHHHHHHHSCT---------TC
T ss_pred CcHHHHHHHHHHHHcCCcc----cCCHHHHHHHHHHHHHHhCC--CCeEEEeCCHHHHHHHHHHHcCCC---------Cc
Confidence 4578899999988764321 1256788999999 999882 257899999999999998765 10 12
Q ss_pred ccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCc-chhhhhhc
Q 002941 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIV 573 (863)
Q Consensus 495 r~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~~~~ 573 (863)
..||+...+|.+.... +...|.. +..++.. ..+
T Consensus 79 ------------d~Vi~~~~~~~~~~~~-~~~~G~~----------------------------~~~v~~~~~~~----- 112 (377)
T 3ju7_A 79 ------------KYALMPSFTFPATPLA-AIWCGLE----------------------------PYFIDISIDDW----- 112 (377)
T ss_dssp ------------CEEEEESSSCTHHHHH-HHHTTCE----------------------------EEEECBCTTTC-----
T ss_pred ------------CEEEECCCCcHHHHHH-HHHcCCE----------------------------EEEEecCCccC-----
Confidence 5788888888764322 2211100 0001110 000
Q ss_pred cccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc
Q 002941 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (863)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~ 653 (863)
.-| .+.+++.+.. ...++.+|+ |+ +..|...+ +++|.++|+ |
T Consensus 113 ----------------~~d--------~~~l~~~i~~-----~~~~tk~v~--~~--~~~G~~~~----~~~i~~la~-~ 154 (377)
T 3ju7_A 113 ----------------YMD--------KTVLWDKIEE-----LKEEVAIVV--PY--ATFGSWMN----LEEYEELEK-K 154 (377)
T ss_dssp ----------------SBC--------HHHHHHHHHH-----HGGGEEEEC--CB--CGGGBCCC----CHHHHHHHH-T
T ss_pred ----------------CcC--------HHHHHHHHhc-----CCCCceEEE--EE--CCCCCccC----HHHHHHHHh-c
Confidence 011 2445565521 011255555 43 33465554 789999999 9
Q ss_pred CCeEEEecccccccccCCcchhhhc-CCCCcEEEec----cccCCCCCCceeeec-cHHHHHhhhc---CCc---cceee
Q 002941 654 KIPVIFDEVFTGFWRLGVETTADLL-GCVPDIACYG----KLLTGGVIPLAATLA-TNAVFDSFVG---DSK---LKALL 721 (863)
Q Consensus 654 gilLI~DEV~TGfGRtG~~~a~e~~-gv~PDivt~s----KgLggG~~Pigav~~-~~~i~~~l~~---~~~---~~~~~ 721 (863)
|+++|.|++|+ +|.. +..... +...|+.++| |.+++| ..|++++ ++++++.+.. .+. .....
T Consensus 155 ~~~vi~D~a~a-~g~~---~~~~~~g~~~~d~~~~S~~~~K~l~~g--~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~ 228 (377)
T 3ju7_A 155 GVPVVVDAAPG-FGLM---NGGMHYGQDFSGMIIYSFHATKPFGIG--EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTM 228 (377)
T ss_dssp TCCBEEECTTC-TTCE---ETTEETTTTCSSEEEEECBTTSSSCCB--SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCS
T ss_pred CCEEEEECCCc-cCCe---ECCEeccCCCCcEEEEECCCCCcCCCC--CcEEEEECCHHHHHHHHHHHhcCCCCCCceee
Confidence 99999999995 5432 112223 2236887775 999875 3556665 5666665442 110 00112
Q ss_pred cccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC----eeEecc---cceEEEEEEccC
Q 002941 722 HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT----VQRVVA---LGTLCAIELQAA 794 (863)
Q Consensus 722 ~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~----v~~vrg---~Gl~~~iel~~~ 794 (863)
.++.+..+++.+|.+++.|+.++ .+.++..++.+++.+.| ++.+. +....+ .-.++.+.+.+.
T Consensus 229 ~g~~~~~~~~~aa~~~~~l~~l~--~~~~~~~~~~~~~~~~L--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3ju7_A 229 MGFNCKMSEYAAAIGIATMKKWD--DKLKERTRISEWYKQLL--------QSNGLMKKGWQLQKTEAVIQQFMPILCPEE 298 (377)
T ss_dssp SCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHH--------HHTTTTTTTCBCCCCSCBCCSSEEEECCTT
T ss_pred ccccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh--------cCCCCccccccCCCCCcceEEEEEEEeCCh
Confidence 34566778898888888887653 23344445555444433 22221 111111 112334444321
Q ss_pred CcCCCCchHHHHHHHHHHHHCCcEEEec--------------------------CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKLREDGVYMRPL--------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------------------------g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
. ....+.+.|.++||.++.. ...+++.....+|++|++.+++.|.+
T Consensus 299 ~--------~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~ 370 (377)
T 3ju7_A 299 V--------RNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQ 370 (377)
T ss_dssp S--------CHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC
T ss_pred h--------hHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHH
Confidence 1 1567889999999988531 13567655556899999999999988
Q ss_pred HHHHH
Q 002941 849 RLEEF 853 (863)
Q Consensus 849 ~l~~l 853 (863)
++..-
T Consensus 371 ~~~~~ 375 (377)
T 3ju7_A 371 KVVSA 375 (377)
T ss_dssp -----
T ss_pred HHhcc
Confidence 77653
No 221
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.20 E-value=5.4e-10 Score=126.66 Aligned_cols=290 Identities=12% Similarity=0.014 Sum_probs=160.7
Q ss_pred CcHHHHHHHHHHHH---hcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEE---eCChhhHHHHHHHHHHHHHHhhcc
Q 002941 417 LQIELARDMGYTAA---RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYF---SDNGSTAIEIALKMAFRKFSFDHE 490 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~---~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f---~~SGSeAvE~ALklA~r~~~~~~G 490 (863)
|+++|.+|+.++.. .+.......+...-..+|.++++++++. +..++ ++||++|+..+++..++
T Consensus 30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~---e~alv~p~~~sGt~Ai~~al~all~------- 99 (409)
T 3jzl_A 30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKT---EAALVRPQIISGTHAISTVLFGILR------- 99 (409)
T ss_dssp HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTC---SEEEEETTSCSHHHHHHHHHHHHCC-------
T ss_pred hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCC---CcEEEECCCccHHHHHHHHHHHhcC-------
Confidence 56788888877542 1222222234456678899999999984 45555 89999999999876521
Q ss_pred ccccccCCCccccccccEEEEec-CCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhh
Q 002941 491 VLVDFLGKDTTEKCIELKVLALK-GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569 (863)
Q Consensus 491 ~~tgr~~~~~~~~~~r~~II~~~-~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~ 569 (863)
.| ..||+.. ..|.+ +...+..++. ....+ ...+. .+.+++....+
T Consensus 100 --~G------------D~Vl~~~~~~y~~-~~~~~~~~g~--~~~~l-----~~~G~-----------~~~~v~~~~~g- 145 (409)
T 3jzl_A 100 --PD------------DELLYITGQPYDT-LEEIVGIRKQ--GQGSL-----KDFHI-----------GYSSVPLLENG- 145 (409)
T ss_dssp --TT------------CEEEECSSSCCTT-HHHHHTSSSS--SSSCT-----GGGTC-----------EEEECCCCTTS-
T ss_pred --CC------------CEEEEeCCCCcHh-HHHHHhcccc--hhhHH-----HHcCC-----------EEEEeCCCCCC-
Confidence 12 5688877 44444 3222211111 00000 00000 01111110000
Q ss_pred hhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc----ccccCCCceeCCHHHHHH
Q 002941 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP----VVHAAGGMHMVDPLFQRI 645 (863)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEP----Viqg~gG~~~pp~~fL~~ 645 (863)
..| .+.+++.+. .+..+|++|+ . .++.|.+. -+++
T Consensus 146 --------------------~~d--------~e~l~~ai~--------~~tklV~i~~s~g~p-~nptg~v~----~l~~ 184 (409)
T 3jzl_A 146 --------------------DVD--------FPRIAKKMT--------PKTKMIGIQRSRGYA-DRPSFTIE----KIKE 184 (409)
T ss_dssp --------------------CCC--------HHHHHHHCC--------TTEEEEEEECSCTTS-SSCCCCHH----HHHH
T ss_pred --------------------CcC--------HHHHHHhcc--------CCCeEEEEECCCCCC-CCCcCccc----cHHH
Confidence 011 244555552 3567888997 6 67777654 3999
Q ss_pred HHHHHHH--cCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCCCCC-ceeeeccHHHHHhhhcCCcccee
Q 002941 646 LVKECQN--RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIP-LAATLATNAVFDSFVGDSKLKAL 720 (863)
Q Consensus 646 Lrelc~~--~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~P-igav~~~~~i~~~l~~~~~~~~~ 720 (863)
|.++|++ ||+++|+||++..+ ..+. +......|++ +++|.++|+..| .|++++++++++.+..... ..
T Consensus 185 I~~la~~~~~~~~livD~a~~~~-~~~~----~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~--~~ 257 (409)
T 3jzl_A 185 MIVFVKNINPEVIVFVDNCYGEF-VEYQ----EPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLT--TP 257 (409)
T ss_dssp HHHHHHHHCTTCEEEEECTTCTT-TSSC----CSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHS--CT
T ss_pred HHHHHHhhCCCCEEEEeCCcccc-cccC----CccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhc--cc
Confidence 9999999 99999999998533 2111 1112235887 578999876445 4778899999998764100 00
Q ss_pred ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC-e---eEecccceEEEEEEccCCc
Q 002941 721 LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT-V---QRVVALGTLCAIELQAAGC 796 (863)
Q Consensus 721 ~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~-v---~~vrg~Gl~~~iel~~~~~ 796 (863)
..+.+.+..+..+.+++..|+.+ +...++..+++.++.+.| ++++. | ..-.+..+++.|.+.+.
T Consensus 258 ~~g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L--------~~~g~~v~p~~~~~~~~~i~~i~l~~~-- 325 (409)
T 3jzl_A 258 GIGREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAML--------AEFGVEADPVWDAPRTDLIQSVSFHNK-- 325 (409)
T ss_dssp TTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--------HHTTCEEESCTTSCCSSSCCEEECSCH--
T ss_pred cccccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHH--------HhCCCcccCCCCCCCccEEEEEEeCCH--
Confidence 11222232222233444444433 233455666666665543 23332 1 01123344888888633
Q ss_pred CCCCchHHHHHHHHHHHHCC
Q 002941 797 NAGYGSLYAASLLKKLREDG 816 (863)
Q Consensus 797 ~~~~~~~~~~~l~~~l~e~G 816 (863)
..+.++++.|.+..
T Consensus 326 ------~~~~~~~~~L~~~~ 339 (409)
T 3jzl_A 326 ------EKMVAFAQAIQAAS 339 (409)
T ss_dssp ------HHHHHHHHHHHHTS
T ss_pred ------HHHHHHHHHHHhcC
Confidence 25778899998764
No 222
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=99.20 E-value=3.1e-11 Score=132.80 Aligned_cols=151 Identities=16% Similarity=0.151 Sum_probs=112.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccCCCccccccchh
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (863)
.+.+||+||++++|||+++..|.++|+ ++|+++++++|.|+|..-..+ .++
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~-----~~G~~v~~v~tgqtg~li~~~--------~gv---------------- 219 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERAL-----EKGIKAGFLATGQTGILIGAD--------AGY---------------- 219 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHH-----HTTCCEEEEECSHHHHHTTCS--------EEC----------------
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHH-----hcCCeEEEEccCceeeeeccC--------CCC----------------
Confidence 568999999999999999999999999 999999999988875421111 011
Q ss_pred hhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCChhH
Q 002941 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSK 196 (863)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~~ 196 (863)
......+++.+.+.+ +
T Consensus 220 --------------------------------------------------------~~D~~~~~~~ag~~e-~------- 235 (350)
T 2g0t_A 220 --------------------------------------------------------VIDAVPADFVSGVVE-K------- 235 (350)
T ss_dssp --------------------------------------------------------CGGGSBGGGHHHHHH-H-------
T ss_pred --------------------------------------------------------CCCceecchhhHHHH-h-------
Confidence 112344567777666 2
Q ss_pred HHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEEC-CC-----------C-Cc
Q 002941 197 VIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGD-GR-----------L-GG 263 (863)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~-~~-----------~-g~ 263 (863)
++..+. .++ +|++||||+||++.|+. ....+.+.+....+.++++. .. + +.
T Consensus 236 ~i~~~~--~~~-------------~D~ivVEGqGgl~~P~~-~~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~~~~ 299 (350)
T 2g0t_A 236 AVLKLE--KTG-------------KEIVFVEGQGALRHPAY-GQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPD 299 (350)
T ss_dssp HHHHHH--HTT-------------CSEEEEECCSCTTCTTT-HHHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSCCCC
T ss_pred hHHHhh--hcC-------------CCEEEEccCeeccccCc-hHHHHHHHcCCCCCEEEEEeCCCCccccCCCcccCCcC
Confidence 222222 233 59999999999999984 33478899999999888865 21 5 89
Q ss_pred HHHHHHHHHHHHhCCCcEEEEE-EcCCCCCCHHHHHHhhcCCCCeee
Q 002941 264 ISGTISAYESLKLRGYDVVAVV-FEDHGLVNEVPLMSYLRNRVPVLV 309 (863)
Q Consensus 264 i~~~~~~~~~~~~~~~~v~gvi-~n~~~~~~~~~~~~~~~~~~pvl~ 309 (863)
+++.+.+++.+. +.+|+|++ +|. ++. .++|+..
T Consensus 300 i~~~i~~ie~l~--~~~V~gi~~lN~---------~~~--~glP~~d 333 (350)
T 2g0t_A 300 FEEERRLIETLS--NAKVIGGVSLNG---------GFE--TDLPVYD 333 (350)
T ss_dssp HHHHHHHHHHSS--SCEEEEEECSSC---------CCC--CSSCEEC
T ss_pred HHHHHHHHHHhc--CCcEEEEEEcCc---------hHH--HCCCeee
Confidence 999999999987 89999999 995 222 5777764
No 223
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.19 E-value=8.5e-09 Score=119.12 Aligned_cols=210 Identities=10% Similarity=0.042 Sum_probs=116.0
Q ss_pred EEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-CCcEEEe--ccccCCCCCCc
Q 002941 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGGVIPL 698 (863)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivt~--sKgLggG~~Pi 698 (863)
.++..+ ....|.+-+ +++|.++|++||++|++|+++.|+...+..+.....|+ ..|.+++ .|.+++- ...
T Consensus 245 vv~~~~--~t~~G~id~----l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p-~g~ 317 (481)
T 4e1o_A 245 VCATLG--TTGVCAFDC----LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVH-FDC 317 (481)
T ss_dssp EEEEBS--CTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SSC
T ss_pred EEEecC--CCCCcCcCC----HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCC-Cce
Confidence 344444 456676655 99999999999999999999966433333222222344 4698887 5988865 456
Q ss_pred eeeeccHH-HH-HhhhcCCccc---------ee---ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 002941 699 AATLATNA-VF-DSFVGDSKLK---------AL---LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWD 764 (863)
Q Consensus 699 gav~~~~~-i~-~~l~~~~~~~---------~~---~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~ 764 (863)
|+++++++ .. +.+......- .. ....+.....+.+.++ |+.+..+. ++++.++...+.+++
T Consensus 318 g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~a---l~~~g~~g-~~~~~~~~~~~a~~l- 392 (481)
T 4e1o_A 318 TGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFV---IRSFGVKN-LQAHVRHGTEMAKYF- 392 (481)
T ss_dssp EEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHH-
T ss_pred EEEEEeCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHH---HHHhHHHH-HHHHHHHHHHHHHHH-
Confidence 67766544 32 2222110000 00 0001111133444444 44432222 223333333344433
Q ss_pred HHHHHHHhcCCCeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCc-EEEe---cC-CEEEEecC-CCCcHH
Q 002941 765 LELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGV-YMRP---LG-NVIYLMCG-PCSSPE 837 (863)
Q Consensus 765 ~~l~~~~~~~p~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV-~~~p---~g-~~lr~~pp-l~~t~e 837 (863)
.+.+.+.|.+.-+. ....++.+.+... .....++.+.|.++|+ ++.+ .| ..+|+... ..+|++
T Consensus 393 ---~~~L~~~~g~~~~~~~~~~~v~f~~~~~-------~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~ 462 (481)
T 4e1o_A 393 ---ESLVRNDPSFEIPAKRHLGLVVFRLKGP-------NSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRD 462 (481)
T ss_dssp ---HHHHHTCTTEECCSCCCSSEEEEEESSC-------HHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHH
T ss_pred ---HHHHhcCCCeEEecCCceeEEEEEeCCc-------hHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHH
Confidence 23344555433221 2334566666432 1246678889999884 4443 23 57888744 446899
Q ss_pred HHHHHHHHHHHHHHHH
Q 002941 838 VCSQLLLKLYQRLEEF 853 (863)
Q Consensus 838 eid~~v~~L~~~l~~l 853 (863)
+|++++++|+++++++
T Consensus 463 di~~~~~~i~~~~~~l 478 (481)
T 4e1o_A 463 DILRDWNLIRDAATLI 478 (481)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 224
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.16 E-value=8.5e-09 Score=118.90 Aligned_cols=213 Identities=13% Similarity=0.034 Sum_probs=119.7
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-CCcEEEe--ccccCCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGGVI 696 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivt~--sKgLggG~~ 696 (863)
++.++.-| .+..|.+-+ +++|.++|++||+++++|+++.|+-.....+.....|+ ..|.+++ .|.++.. +
T Consensus 237 ~~vv~~~~--~n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-~ 309 (486)
T 1js3_A 237 FFVVATLG--TTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-F 309 (486)
T ss_dssp EEEEEEBS--CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-S
T ss_pred eEEEEeCC--CCCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC-c
Confidence 35555666 466777655 99999999999999999999965432221111111233 4688876 5988766 6
Q ss_pred CceeeeccHH--HHHhhhcCCcc-ce----------eec---ccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHH
Q 002941 697 PLAATLATNA--VFDSFVGDSKL-KA----------LLH---GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILR 760 (863)
Q Consensus 697 Pigav~~~~~--i~~~l~~~~~~-~~----------~~~---~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~ 760 (863)
..|+++++++ +.+.+...... .. +.. ..+.....+++. ++++.+..++ ++++.+....+.
T Consensus 310 ~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~---~al~~~g~~g-~~~~~~~~~~~a 385 (486)
T 1js3_A 310 DCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMW---FVFRMYGVKG-LQAYIRKHVQLS 385 (486)
T ss_dssp SCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHH---HHHHHHHHHH-HHHHHHHHHHHH
T ss_pred ceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHH---HHHHHHhHHH-HHHHHHHHHHHH
Confidence 7888888654 23444211000 00 000 001112234444 4444332222 333333344444
Q ss_pred HHHHHHHHHHHhcCCCeeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEE-Ee--c-C-CEEEEec-CCC
Q 002941 761 ELWDLELIQQISSHRTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM-RP--L-G-NVIYLMC-GPC 833 (863)
Q Consensus 761 ~~l~~~l~~~~~~~p~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~-~p--~-g-~~lr~~p-pl~ 833 (863)
+++.+ .+.+.|.+.-+ ...+.++.+.+... ......+.+.|.++|+++ .+ . + +.+|+.. ...
T Consensus 386 ~~l~~----~L~~~~~~~~~~~~~~~~v~f~~~~~-------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~ 454 (486)
T 1js3_A 386 HEFEA----FVLQDPRFEVCAEVTLGLVCFRLKGS-------DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRK 454 (486)
T ss_dssp HHHHH----HHHHCTTEEECSCCCSSEEEEEESSC-------HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTT
T ss_pred HHHHH----HHhcCCCeEEeCCCceeEEEEEecCh-------HHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCC
Confidence 44433 33344544322 13455666666421 123567888898888654 32 1 2 5788874 445
Q ss_pred CcHHHHHHHHHHHHHHHHHHH
Q 002941 834 SSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 834 ~t~eeid~~v~~L~~~l~~l~ 854 (863)
+|+++|++++++|+++++++.
T Consensus 455 ~t~~di~~~~~~l~~~~~~~~ 475 (486)
T 1js3_A 455 VESGHVRLAWEHIRGLAAELL 475 (486)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999988764
No 225
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.14 E-value=5.1e-10 Score=123.40 Aligned_cols=202 Identities=10% Similarity=0.013 Sum_probs=123.1
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVI 696 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~ 696 (863)
++.+|++-.. .+..|....+ ++++ ||+++|+||+|. +|.. ...... -|++ +++|.+|. .
T Consensus 142 ~t~~v~~~~~-~n~tG~~~~~---l~~i------~~~~vivD~a~~-~~~~--~~~~~~----~d~~~~s~~K~~g~--~ 202 (362)
T 2c0r_A 142 NAAYLHLTSN-ETIEGAQFKA---FPDT------GSVPLIGDMSSD-ILSR--PFDLNQ----FGLVYAGAQKNLGP--S 202 (362)
T ss_dssp TEEEEEEESE-ETTTTEECSS---CCCC------TTSCEEEECTTT-TTSS--CCCGGG----CSEEEEETTTTTCC--S
T ss_pred CcCEEEEeCC-cCccceeccc---cccc------CCCEEEEEChhh-ccCC--ccchhH----CcEEEEeccccccC--c
Confidence 4555555544 7888886442 3333 899999999994 4322 111111 2776 45898862 1
Q ss_pred CceeeeccHHHHHhhhcCCcccee-------ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHH
Q 002941 697 PLAATLATNAVFDSFVGDSKLKAL-------LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQ 769 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~-------~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~ 769 (863)
-+|++++++++++.+....+ ..+ .....++.++.+++++.++|+.+++.+..++..+..+.+++.+.+.
T Consensus 203 G~G~l~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~--- 278 (362)
T 2c0r_A 203 GVTVVIVREDLVAESPKHLP-TMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDA--- 278 (362)
T ss_dssp SCEEEEEEGGGSSSCCTTSC-GGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH---
T ss_pred CcEEEEEcHHHHhhccccCc-hHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH---
Confidence 26889999988766543110 000 0022346678888999999998754322344555555555554333
Q ss_pred HHhcCC-CeeEe----cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHH
Q 002941 770 QISSHR-TVQRV----VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQ 841 (863)
Q Consensus 770 ~~~~~p-~v~~v----rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~ 841 (863)
+++.+ ..... ...+.++.+.+... ....++.+.|.++||.+.+. .+.+|++....+++|++++
T Consensus 279 -L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~ 349 (362)
T 2c0r_A 279 -IDQSGGFYRGCVDVDSRSDMNITFRLASE--------ELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEA 349 (362)
T ss_dssp -HHTSTTSSEESSCGGGBCSSEEEEECSCH--------HHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHH
T ss_pred -HHHcCCccccCCChHHcCCcEEEEEcCCc--------chHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHH
Confidence 33444 21110 11234555655421 13567888999999988763 2569998777779999999
Q ss_pred HHHHHHHHHHH
Q 002941 842 LLLKLYQRLEE 852 (863)
Q Consensus 842 ~v~~L~~~l~~ 852 (863)
++++|++.+++
T Consensus 350 l~~~l~~~~~~ 360 (362)
T 2c0r_A 350 LVQFMEHFKRS 360 (362)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999887654
No 226
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.11 E-value=4.6e-09 Score=119.58 Aligned_cols=290 Identities=11% Similarity=0.003 Sum_probs=159.0
Q ss_pred CcHHHHHHHHHHHHh---cccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEE---eCChhhHHHHHHHHHHHHHHhhcc
Q 002941 417 LQIELARDMGYTAAR---FGHVMFPENVYEPALECAELLLQGVGKGWASRAYF---SDNGSTAIEIALKMAFRKFSFDHE 490 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~---~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f---~~SGSeAvE~ALklA~r~~~~~~G 490 (863)
|+++|.+|+.+.... +.......+...-..+|+++++++++. +..++ ++||++|+..++...++
T Consensus 45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~---e~alv~p~~~sGt~A~~~al~all~------- 114 (427)
T 3hvy_A 45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNT---ESAFVRPHFVNGTHAIGAALFGNLR------- 114 (427)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTC---SEEEEETTCCSHHHHHHHHHHHTCC-------
T ss_pred hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCC---CceEEeCCCCcHHHHHHHHHHHhcC-------
Confidence 568888888875322 111111233455578899999999984 45555 89999999988875521
Q ss_pred ccccccCCCccccccccEEEEec-CCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhh
Q 002941 491 VLVDFLGKDTTEKCIELKVLALK-GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569 (863)
Q Consensus 491 ~~tgr~~~~~~~~~~r~~II~~~-~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~ 569 (863)
+| ..||+.+ ..|+|.. ......+. .+...+ .. .|+....+|..
T Consensus 115 --pG------------D~Vl~~~~~~y~~~~-~~~g~~~~-~~~~~l-----~~-------------~G~~~~~v~~~-- 158 (427)
T 3hvy_A 115 --PN------------DTMMSICGMPYDTLH-DIIGMDDS-KKVGSL-----RE-------------YGVKYKMVDLK-- 158 (427)
T ss_dssp --TT------------CEEEECSSSCCGGGH-HHHTCCTT-CCSCCT-----GG-------------GTCEEEECCCB--
T ss_pred --CC------------CEEEEeCCCCchhHH-HHhccccc-hhhhHH-----HH-------------cCCEEEEecCC--
Confidence 12 5788888 6666542 10100000 000000 00 01111111100
Q ss_pred hhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc----ccccCCCceeCCHHHHHH
Q 002941 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP----VVHAAGGMHMVDPLFQRI 645 (863)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEP----Viqg~gG~~~pp~~fL~~ 645 (863)
+...| .+.+++.+.+ ..++.+|++|+ . .+..|.+. -+++
T Consensus 159 ------------------~~~~d--------~e~l~~~i~~------~~~tklV~i~~s~gyp-~nptg~v~----dl~~ 201 (427)
T 3hvy_A 159 ------------------DGKVD--------INTVKEELKK------DDSIKLIHIQRSTGYG-WRKSLRIA----EIAE 201 (427)
T ss_dssp ------------------TTBCC--------HHHHHHHHHH------CTTEEEEEEESSCCSS-SSCCCCHH----HHHH
T ss_pred ------------------CCCcC--------HHHHHHHhhC------CCCCEEEEEECCCCCC-CCccccHH----HHHH
Confidence 00012 2456666642 13577899998 5 56666443 4999
Q ss_pred HHHHHHH--cCCeEEEecccccccc-cCCcchhhhcCCCCcEE--EeccccCCCCCC-ceeeeccHHHHHhhhcCCccce
Q 002941 646 LVKECQN--RKIPVIFDEVFTGFWR-LGVETTADLLGCVPDIA--CYGKLLTGGVIP-LAATLATNAVFDSFVGDSKLKA 719 (863)
Q Consensus 646 Lrelc~~--~gilLI~DEV~TGfGR-tG~~~a~e~~gv~PDiv--t~sKgLggG~~P-igav~~~~~i~~~l~~~~~~~~ 719 (863)
|.++|++ ||+++|+||++..+ . ..... ....|++ +++|.++|+..| .|++++++++++.+..... .
T Consensus 202 i~~ia~~~~~g~~livD~a~~~~-~~~~~p~-----~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~--~ 273 (427)
T 3hvy_A 202 IIKSIREVNENVIVFVDNCYGEF-VEEKEPT-----DVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVT--V 273 (427)
T ss_dssp HHHHHHHHCSSSEEEEECTTCTT-TSSSCGG-----GGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHS--C
T ss_pred HHHHHHHhCCCCEEEEECCcccc-ccCCCCc-----ccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhh--c
Confidence 9999999 89999999999533 3 11211 1235876 678999875445 4677889999998764100 0
Q ss_pred eecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE----ecccceEEEEEEccCC
Q 002941 720 LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR----VVALGTLCAIELQAAG 795 (863)
Q Consensus 720 ~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~----vrg~Gl~~~iel~~~~ 795 (863)
...+.+.+..+..+..++..|+.+ +...++..+++.++.+.| ++++.-.. -.+..+++.+.+.+.
T Consensus 274 ~~~g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L--------~~~g~~V~p~~~~~~~~li~~~~l~~~- 342 (427)
T 3hvy_A 274 PGIGGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIM--------ELAGFDVLPKYNDKRTDIIQAIKFNDE- 342 (427)
T ss_dssp TTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--------HHTTCEEESCTTSCCSSSEEEEECSSH-
T ss_pred CCcccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHH--------HhCCCeecCCCCCCCceEEEEEeCCCH-
Confidence 011112222122233444444432 234556666666666543 33343111 122334888888643
Q ss_pred cCCCCchHHHHHHHHHHHHC
Q 002941 796 CNAGYGSLYAASLLKKLRED 815 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~ 815 (863)
..+.++++.|...
T Consensus 343 -------~~~~~f~~~l~~~ 355 (427)
T 3hvy_A 343 -------KKLIDFIKGIQTA 355 (427)
T ss_dssp -------HHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHhccc
Confidence 2567888888875
No 227
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.09 E-value=1.5e-08 Score=116.97 Aligned_cols=216 Identities=10% Similarity=0.020 Sum_probs=116.6
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-CCcEEEe--ccccCCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGGVI 696 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivt~--sKgLggG~~ 696 (863)
+..+++.+ .+..|.+-+ +++|.++|++||+++++|+++.|.-..+..+.....|+ ..|.+++ .|.+++. .
T Consensus 236 ~~v~~~~~--~t~~G~~~~----l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p-~ 308 (475)
T 3k40_A 236 FYAVVTLG--TTNSCAFDY----LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVN-F 308 (475)
T ss_dssp EEEEEEBS--CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-S
T ss_pred EEEEEEec--CCCCcCcCC----HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCC-C
Confidence 34455556 355677665 99999999999999999999965322222222212243 4698887 5988765 4
Q ss_pred CceeeeccHH-H-HHhhhcCCcc-c--------eeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHH
Q 002941 697 PLAATLATNA-V-FDSFVGDSKL-K--------ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDL 765 (863)
Q Consensus 697 Pigav~~~~~-i-~~~l~~~~~~-~--------~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~ 765 (863)
..|+++++++ . .+.+...... . .........+-+..+....++|+.+..++ ++++.++...+.+++.+
T Consensus 309 g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g-~~~~~~~~~~~a~~l~~ 387 (475)
T 3k40_A 309 DCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVEN-LQAHIRRHCNFAKQFGD 387 (475)
T ss_dssp SCEEEEESSGGGC---------------------------CCCGGGTHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHH
Confidence 6677776643 2 1222111000 0 00000000122223344445555543332 22333333344443332
Q ss_pred HHHHHHhcCCCeeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEE-Ee---cC-CEEEEecC-CCCcHHH
Q 002941 766 ELIQQISSHRTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM-RP---LG-NVIYLMCG-PCSSPEV 838 (863)
Q Consensus 766 ~l~~~~~~~p~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~-~p---~g-~~lr~~pp-l~~t~ee 838 (863)
.+++.|.+.-+ .....++.+.+... .....++.+.|.++|.+. .+ .| ..+|+... ..+|+++
T Consensus 388 ----~L~~~~g~~l~~~~~~~iv~f~~~~~-------~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~d 456 (475)
T 3k40_A 388 ----LCVADSRFELAAEINMGLVCFRLKGS-------NERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSED 456 (475)
T ss_dssp ----HHHHSTTEEESSCCBTTEEEEEESSC-------HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHH
T ss_pred ----HHhcCCCEEEecCCceEEEEEEeCCc-------hHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHH
Confidence 33444443222 12334566666432 124577888999888754 33 23 67888743 3469999
Q ss_pred HHHHHHHHHHHHHHHH
Q 002941 839 CSQLLLKLYQRLEEFD 854 (863)
Q Consensus 839 id~~v~~L~~~l~~l~ 854 (863)
|++++++|+++++++.
T Consensus 457 i~~~~~~i~~~~~~~~ 472 (475)
T 3k40_A 457 MEYSWKEVSAAADEME 472 (475)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887653
No 228
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.09 E-value=4.4e-09 Score=127.19 Aligned_cols=212 Identities=16% Similarity=0.117 Sum_probs=122.8
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc------chhhhcCCC-Cc-EEE--eccc
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE------TTADLLGCV-PD-IAC--YGKL 690 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~------~a~e~~gv~-PD-ivt--~sKg 690 (863)
+.++..|. ..|.+.+ +++|.++|++||++||+||+|.+.-..+.. ...+.+|.. |+ +++ ++|+
T Consensus 284 lviv~~pn---~~G~v~d----l~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~ 356 (730)
T 1c4k_A 284 LAVIQLGT---YDGTIYN----AHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQ 356 (730)
T ss_dssp EEEEESBC---TTSEEEC----HHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHH
T ss_pred EEEEECCC---CCCeecC----HHHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCC
Confidence 56667773 3677776 899999999999999999999632112221 111123431 22 554 4799
Q ss_pred cCCCCCCce-eeeccHHHH---------HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC---hhhHHhHHHHHH
Q 002941 691 LTGGVIPLA-ATLATNAVF---------DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD---PQTNHNIIPERR 757 (863)
Q Consensus 691 LggG~~Pig-av~~~~~i~---------~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~---~~l~~~l~~~~~ 757 (863)
|+| ...| ++..+++.+ ..+.. .+....+.+.++..+++..++++.+.. .++.+++.++.+
T Consensus 357 L~g--~~~gg~I~v~~~~l~g~~~~i~~~~~~~-----~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~ 429 (730)
T 1c4k_A 357 QAG--FSQTSQIHKKDSHIKGQLRYCDHKHFNN-----SFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTI 429 (730)
T ss_dssp SSC--CTTCEEEEEECGGGTTSTTCCCHHHHHH-----HHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred CCC--CCCEEEEEecchhhcCcccccCHHHHHH-----HHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 865 3443 443333221 11111 011223456678888888888887754 335566666666
Q ss_pred HHHHHHHHHHHHHHhcCCCee-----Ee-------------------------------cc--cce-E-----EEEEEcc
Q 002941 758 ILRELWDLELIQQISSHRTVQ-----RV-------------------------------VA--LGT-L-----CAIELQA 793 (863)
Q Consensus 758 ~l~~~l~~~l~~~~~~~p~v~-----~v-------------------------------rg--~Gl-~-----~~iel~~ 793 (863)
++++.+. +. .+.+. .+ .+ .|. + +.+....
T Consensus 430 ~lr~~L~----~~---i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg 502 (730)
T 1c4k_A 430 EARKKLI----KA---GSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPG 502 (730)
T ss_dssp HHHHHHH----HT---TCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSS
T ss_pred HHHHHHh----hh---CCCeEEccccccccccccccccccccccchhhccCccchhccccccCCcccccCCeEEEEEeCC
Confidence 6665442 20 11110 00 00 121 1 2333311
Q ss_pred ---CCcC-CCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 794 ---AGCN-AGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 794 ---~~~~-~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.... ... ...+..+.+.|+++||++...+ ..+|++.++.+|+++++.++++|.+..+.++
T Consensus 503 ~~~~~g~~~~~-g~~~~~l~~~L~e~GI~v~~~~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 503 INPETGDYEDF-GVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp EETTTTEECSS-CCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccc-CCCHHHHHHHHHHCCcEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 0000 000 1125678889999999998765 7899999999999999999999998887654
No 229
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.07 E-value=2.4e-09 Score=121.14 Aligned_cols=218 Identities=10% Similarity=0.079 Sum_probs=125.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC---cchhhh
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADL 677 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvE-PViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~---~~a~e~ 677 (863)
+.+++.+.+ .+ +..++++. |- ++..|.. ++.+.+++|.++|++||+++|.||++.+|...+. ......
T Consensus 162 ~~l~~~l~~-----~~-~~~~i~l~~~~-~NPTG~~-~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~ 233 (405)
T 3k7y_A 162 DLFLNDLRN-----IP-NGSSVILQISC-YNPCSVN-IEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRK 233 (405)
T ss_dssp HHHHHHHHH-----SC-SSCEEEECCSS-CTTTCCC-CCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHH
T ss_pred HHHHHHHHh-----CC-CCeEEEEeCCC-CCCCCCC-CCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHH
Confidence 445666643 12 22345554 44 7899954 5788899999999999999999999998853221 111211
Q ss_pred c-CCCCcEE---EeccccC-CCCCCceeee---ccHHHHHhhhcCCccceeecccCCC-ccHHHHHHHHHHHHHhc-Chh
Q 002941 678 L-GCVPDIA---CYGKLLT-GGVIPLAATL---ATNAVFDSFVGDSKLKALLHGHSYS-AHALGCAAAAKSIKWFK-DPQ 747 (863)
Q Consensus 678 ~-gv~PDiv---t~sKgLg-gG~~Pigav~---~~~~i~~~l~~~~~~~~~~~~~T~~-~~pla~AAalAaL~~l~-~~~ 747 (863)
+ ...+.++ +|||.++ .| +.+|+++ .++++++.+...- . ..+..+++ .+.++.+++.++|+.-. .++
T Consensus 234 ~~~~~~~~i~~~S~SK~~~l~G-lRiG~~~~~~~~~~~~~~~~~~l--~-~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~ 309 (405)
T 3k7y_A 234 FEEKNIAFSVCQSFSKNMSLYG-ERAGALHIVCKNQEEKKIVFNNL--C-FIVRKFYSSPVIHTNRILCQLLNNQNLKLN 309 (405)
T ss_dssp HHTTTCCEEEEEECTTTSCCTT-TTEEEEEEECSSHHHHHHHHHHH--H-HHHHTTTSSCCHHHHHHHHHHHHCHHHHHH
T ss_pred HHhcCCcEEEEeeCCccCCCcc-ccceEEEEEeCCHHHHHHHHHHH--H-HHHhcccCCCcHHHHHHHHHHhCCHHHHHH
Confidence 1 2234444 6899998 78 8999975 3677665543100 0 01123333 34566666666665200 122
Q ss_pred hHHhHHHH---HHHHHHHHHHHHHHHHh----cCCC---eeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHHHCC
Q 002941 748 TNHNIIPE---RRILRELWDLELIQQIS----SHRT---VQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLREDG 816 (863)
Q Consensus 748 l~~~l~~~---~~~l~~~l~~~l~~~~~----~~p~---v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~G 816 (863)
|.+.+.+. .+..++.+. +.+. +++. ...+...| +++.+.+.. +++..|.++|
T Consensus 310 ~~~~l~~~~~~~~~~R~~l~----~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~-------------~~~~~L~~~g 372 (405)
T 3k7y_A 310 WIKELSQLSQRITNNRILFF----NKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA-------------KIAEHLKTHH 372 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG-------------GGTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhhhhhcCCCCCCccccCCceEEEecCCCH-------------HHHHHHHHCC
Confidence 33444333 333444333 3333 3321 22233444 444443321 1234457889
Q ss_pred cEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 817 VYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 817 V~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
|++.|.+ ||.. ...++++|++++++|.++++.
T Consensus 373 V~v~p~~---Ris~-a~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 373 IYIINNG---RINV-SGITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp EECCTTS---EEEG-GGCCTTHHHHHHHHHHHHHHC
T ss_pred EeecCCC---eEEE-eccCHHHHHHHHHHHHHHHhh
Confidence 9999966 5541 246889999999999998764
No 230
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.04 E-value=1.1e-08 Score=116.44 Aligned_cols=173 Identities=12% Similarity=0.085 Sum_probs=103.1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcc----ccccCCCceeCCHHHHHHHHHHHHH--cCCeEEEecccccccc-cCCcch
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEP----VVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWR-LGVETT 674 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEP----Viqg~gG~~~pp~~fL~~Lrelc~~--~gilLI~DEV~TGfGR-tG~~~a 674 (863)
+.+++.+.+ ..++.+|++++ . .++.|.+. -+++|.++|++ ||+++|+||++..+ . .....
T Consensus 165 e~l~~~l~~------~~~tklV~i~~s~~~p-~nptg~i~----dl~~i~~la~~~~~g~~livD~a~~~~-~~~~~p~- 231 (427)
T 3i16_A 165 EEIEKVLKE------DESITLVHIQRSTGYG-WRRALLIE----DIKSIVDCVKNIRKDIICFVDNCYGEF-MDTKEPT- 231 (427)
T ss_dssp HHHHHHHHT------CTTEEEEEEECSCCSS-SSCCCCHH----HHHHHHHHHHHHCTTSEEEEECTTTTT-SSSSCGG-
T ss_pred HHHHHHhhC------CCCCEEEEEEcCCCCC-CCCcccHH----HHHHHHHHHHHhCCCCEEEEECCCccc-cccCCcc-
Confidence 456666642 13577888888 5 67777554 49999999999 99999999999533 2 11111
Q ss_pred hhhcCCCCcEE--EeccccCCCCCC-ceeeeccHHHHHhhhc--CCccceeecccCCCccH-HH-HHHHHHHHHHhcChh
Q 002941 675 ADLLGCVPDIA--CYGKLLTGGVIP-LAATLATNAVFDSFVG--DSKLKALLHGHSYSAHA-LG-CAAAAKSIKWFKDPQ 747 (863)
Q Consensus 675 ~e~~gv~PDiv--t~sKgLggG~~P-igav~~~~~i~~~l~~--~~~~~~~~~~~T~~~~p-la-~AAalAaL~~l~~~~ 747 (863)
....|++ +++|.++|+..| .|++++++++++.+.. ... ..+.+. .| .. +..++..|+.+ +.
T Consensus 232 ----~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~----~~g~~~--~~~~~~a~~~l~gl~~~--~~ 299 (427)
T 3i16_A 232 ----DVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVP----GIGGEC--GSTFGVVRSMYQGLFLA--PH 299 (427)
T ss_dssp ----GGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCT----TTGGGC--CCCTTCHHHHHHHHHHH--HH
T ss_pred ----ccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccC----ccCccC--CccHHHHHHHHHHHHHH--HH
Confidence 1235776 678999875334 5778899999998764 110 011111 11 22 23333333332 33
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc-----cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCC
Q 002941 748 TNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-----LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDG 816 (863)
Q Consensus 748 l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-----~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~G 816 (863)
..++..+++.++.+.| ++++.-. ..+ ..+++.|++.+. ..+.++++.|....
T Consensus 300 r~~~~~~~a~~la~~L--------~~~g~~V-~p~~~~~~~~~i~~i~l~~~--------~~~~~f~~~l~~~~ 356 (427)
T 3i16_A 300 ISMEALKGAILCSRIM--------ELAGFEV-MPKYDEKRSDIIQSIKFNDK--------DKLIEFCKGIQTGS 356 (427)
T ss_dssp HHHHHHHHHHHHHHHH--------HHTTCEE-ESCTTSCCSSSCEEEECSSH--------HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHH--------HhCCCee-cCCCCCCCccEEEEEEECCH--------HHHHHHHHHHhhcC
Confidence 4456666666665543 3344311 122 334888988643 25778899888763
No 231
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=98.99 E-value=1.9e-09 Score=122.52 Aligned_cols=209 Identities=10% Similarity=0.076 Sum_probs=114.1
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC---cchhhhc-CCCCcEE---EeccccC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL-GCVPDIA---CYGKLLT 692 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~---~~a~e~~-gv~PDiv---t~sKgLg 692 (863)
...++.-+= ++..|. .++.+.+++|.++|++|++++|+||++.||...+. .+....+ +..+.++ .|||.++
T Consensus 191 ~~vll~~~p-~NPtG~-~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~ 268 (420)
T 4h51_A 191 SVFILHQCA-HNPTGV-DPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMG 268 (420)
T ss_dssp CEEEEESSS-CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC
T ss_pred cEEEEeCCC-CCCCCC-CCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccc
Confidence 334555442 788885 55889999999999999999999999999953332 1222111 2223333 6799775
Q ss_pred -CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccH-HHHHHHHHHHHHhcChhh----HH---hHHHHHHHHHHHH
Q 002941 693 -GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHA-LGCAAAAKSIKWFKDPQT----NH---NIIPERRILRELW 763 (863)
Q Consensus 693 -gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~p-la~AAalAaL~~l~~~~l----~~---~l~~~~~~l~~~l 763 (863)
-| +.+|++++..+..+....-..........+++..| .++.++...| .++.+ .+ .++++.+.+++.|
T Consensus 269 ~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l---~d~~l~~~~~~~~~~m~~r~~~~R~~l 344 (420)
T 4h51_A 269 LYS-ERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLIL---SNNELRKEWEAELSAMAERIRTMRRTV 344 (420)
T ss_dssp CGG-GCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHH---HSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-CceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35 89999887544333221100000001223444333 3333333333 24332 22 2333333444433
Q ss_pred HHHHHHHHhcCC--C-eeE-ecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHH
Q 002941 764 DLELIQQISSHR--T-VQR-VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVC 839 (863)
Q Consensus 764 ~~~l~~~~~~~p--~-v~~-vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eei 839 (863)
.+. +.+.. . ... ....|+|..+.+. .+.++.|.++||++.+.| ||.. ...+++.|
T Consensus 345 ~~~----L~~~g~~~~~~~i~~q~GmF~~~gls-------------~e~v~~L~e~~Vy~~~~g---Ris~-Agl~~~ni 403 (420)
T 4h51_A 345 YDE----LLRLQTPGSWEHVINQIGMFSFLGLS-------------KAQCEYCQNHNIFITVSG---RANM-AGLTHETA 403 (420)
T ss_dssp HHH----HHHTTCSSCCTHHHHCCSSEEECCCC-------------HHHHHHHHHTTEECCTTC---EEEG-GGCCHHHH
T ss_pred HHH----HHHhCCCCCCCeecCCCceEEecCcC-------------HHHHHHHHhCCEEEcCCC---EEEe-ccCCHHHH
Confidence 333 33322 1 111 2345666543332 123467889999998866 5542 25799999
Q ss_pred HHHHHHHHHHHHHHHH
Q 002941 840 SQLLLKLYQRLEEFDK 855 (863)
Q Consensus 840 d~~v~~L~~~l~~l~~ 855 (863)
+.+.++|.++++++.+
T Consensus 404 ~~~a~aI~~vvr~i~r 419 (420)
T 4h51_A 404 LMLAQTINDAVRNVNR 419 (420)
T ss_dssp HHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999987653
No 232
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=98.96 E-value=7e-09 Score=124.68 Aligned_cols=318 Identities=15% Similarity=0.108 Sum_probs=175.5
Q ss_pred CChHHHHHHHHHHhhcCCCCCCeEEEeCCh-hhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 441 VYEPALECAELLLQGVGKGWASRAYFSDNG-STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 441 ~~~~~~eLae~L~~~~p~~~~~~v~f~~SG-SeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
++.+..++.++++++++ .++++|+++| +.||.+++.... ++ ..+||+- ...|.+
T Consensus 193 ~~g~i~eaE~~lA~~fG---a~~a~~v~nGts~An~~ai~al~-----------~p----------GD~VLv~-r~~H~S 247 (715)
T 3n75_A 193 HSGPHKEAEQYIARVFN---ADRSYMVTNGTSTANKIVGMYSA-----------PA----------GSTILID-RNCHKS 247 (715)
T ss_dssp TBTHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHHC-----------CT----------TCEEEEE-SSCCHH
T ss_pred CcHHHHHHHHHHHHHhC---CCCceEECcHHHHHHHHHHHHhC-----------CC----------CCEEEEC-CCccHH
Confidence 45678899999999998 4678887888 589988887652 11 1445555 445666
Q ss_pred ccccceecCCC-CCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 520 TLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 520 t~gals~t~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
...++.++|.. .| +++.... -++.+ +.|. ..-|
T Consensus 248 ~~~~l~lsGa~pv~---------------v~~~~~~--~gi~~-~i~~----------------------~~~d------ 281 (715)
T 3n75_A 248 LTHLMMMSDVTPIY---------------FRPTRNA--YGILG-GIPQ----------------------SEFQ------ 281 (715)
T ss_dssp HHHHHHHSCCEEEE---------------ECCCBCT--TCCBC-CCCG----------------------GGGS------
T ss_pred HHHHHHHcCCEEEE---------------Eeccccc--ccccc-Cccc----------------------ccCC------
Confidence 55555554311 11 1000000 00000 0000 0001
Q ss_pred HHHHHHHHHHhcCCCCCCCCc---EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch-
Q 002941 599 IYSSYISQNLLQNPGLKVSGC---IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT- 674 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~---iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a- 674 (863)
.+.+++.+++ +++. .+.|++.| +..|.+.+ +++|.++|++++ +|+||+|.+.-..|..+.
T Consensus 282 --~e~Le~~l~~-----~~~~k~p~~vivt~p---n~~G~v~d----l~~I~ela~~~~--livDEAH~~~~~f~~~~~~ 345 (715)
T 3n75_A 282 --HATIAKRVKE-----TPNATWPVHAVITNS---TYDGLLYN----TDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEG 345 (715)
T ss_dssp --HHHHHHHHHH-----STTCCSCSEEEEESS---CTTSEEEC----HHHHHHHCCCSE--EEEECTTCTTGGGSGGGTT
T ss_pred --HHHHHHHHhh-----CcCccCceEEEEECC---CCCCccCC----HHHHHHHhCcCc--EEEccccccccccCCcccc
Confidence 2456677753 1211 26777888 46787776 889999998774 799999963322343221
Q ss_pred hhh--cCCCCcEE-----EeccccCCCCCCceeeeccHHHHH-hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-
Q 002941 675 ADL--LGCVPDIA-----CYGKLLTGGVIPLAATLATNAVFD-SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD- 745 (863)
Q Consensus 675 ~e~--~gv~PDiv-----t~sKgLggG~~Pigav~~~~~i~~-~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~- 745 (863)
... .|..+|++ +++|+|+|= -..|.+.++.++.. .+.. .+....|.+.+++.+|+..++++++++
T Consensus 346 ~~al~~g~~aD~vii~~~S~hKtL~gl-tqgs~i~v~~~i~~~~~~~-----~~~~~~STSpsy~~~AsldaA~~~~~~~ 419 (715)
T 3n75_A 346 KCGMSGGRVEGKVIYETQSTHKLLAAF-SQASMIHVKGDVNEETFNE-----AYMMHTTTSPHYGIVASTETAAAMMKGN 419 (715)
T ss_dssp SSTTSSSCCTTCEEEEEECHHHHSSCC-TTCEEEEEESCCCHHHHHH-----HHHHTSCSSCCHHHHHHHHHHHHHHSHH
T ss_pred ccccccCcCCCEEEEEEecccccccCC-CCeeEEEeCchhhHHHHHH-----HHHhhcCCCchHHHHHHHHHHHHHHHhh
Confidence 111 22236854 458998751 12345556554211 2221 123446778899999999999999863
Q ss_pred --hhhHHhHHHHHHHHHHHHHHHHHHHHhc--C----C-CeeEec----------------ccceE------EEEEEccC
Q 002941 746 --PQTNHNIIPERRILRELWDLELIQQISS--H----R-TVQRVV----------------ALGTL------CAIELQAA 794 (863)
Q Consensus 746 --~~l~~~l~~~~~~l~~~l~~~l~~~~~~--~----p-~v~~vr----------------g~Gl~------~~iel~~~ 794 (863)
+++.+++.++++++++.+.+. ...... . + .+.+.. +.+.+ +.|....-
T Consensus 420 ~g~~~~~~l~~~a~~~r~~L~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~ 498 (715)
T 3n75_A 420 AGKRLINGSIERAIKFRKEIKRL-RTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGM 498 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEECSCB
T ss_pred ccHHHHHHHHHHHHHHHHHHHHh-hhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEEEcCCC
Confidence 457788888888888766432 110000 0 0 000000 00100 11111100
Q ss_pred CcCCCCc--hHHHHHHHHHHHHCCcEEEec-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 795 GCNAGYG--SLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 795 ~~~~~~~--~~~~~~l~~~l~e~GV~~~p~-g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
+....+. .-.+..+.+.|+++||.+--. .+.+.+..++..|+++++.++++|.+.-+.
T Consensus 499 ~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~~ 559 (715)
T 3n75_A 499 EKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKRA 559 (715)
T ss_dssp CTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 0000000 012456778888999988643 477778888899999999999988766543
No 233
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=98.95 E-value=3.2e-08 Score=120.45 Aligned_cols=218 Identities=14% Similarity=0.094 Sum_probs=127.4
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhh-cCCCCcE------E--Eeccc
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADL-LGCVPDI------A--CYGKL 690 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~-~gv~PDi------v--t~sKg 690 (863)
+.+++.|. ..|.+.+ +++|.++|++||++|++||+|.+.-..+..+ .... .|...|+ + +++|+
T Consensus 315 lvil~~pn---~~G~v~d----l~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~ 387 (755)
T 2vyc_A 315 YCVVTNCT---YDGVCYN----AKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKL 387 (755)
T ss_dssp CEEEESSC---TTSEEEC----HHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTS
T ss_pred EEEEECCC---CCceecC----HHHHHHHHHHcCCEEEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECcccc
Confidence 56777773 4677766 8999999999999999999996431222211 0111 2300232 3 55899
Q ss_pred cCCCCCC-ceeeeccHH--HH--HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcCh---hhHHhHHHHHHHHHHH
Q 002941 691 LTGGVIP-LAATLATNA--VF--DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDP---QTNHNIIPERRILREL 762 (863)
Q Consensus 691 LggG~~P-igav~~~~~--i~--~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~---~l~~~l~~~~~~l~~~ 762 (863)
|+| .+ .|.+.++++ .. ..+.. .+....+.+.+.+.+++..++++.++++ ++.+++.++.+++++.
T Consensus 388 L~g--~~~g~~i~~~~~~~~i~~~~~~~-----~~~~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~ 460 (755)
T 2vyc_A 388 LNA--LSQASYIHVREGRGAINFSRFNQ-----AYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQA 460 (755)
T ss_dssp SSC--CTTCEEEEEECCBTCCCHHHHHH-----HHHHTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccC--cCCeeeeeecCcccccCHHHHHH-----HHHHhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 875 33 455555543 11 12211 0112234567788888888899988664 4677788888888776
Q ss_pred HHHHHHHH-------HhcC-CCeeEecc---------------------------------------cc------eEEEE
Q 002941 763 WDLELIQQ-------ISSH-RTVQRVVA---------------------------------------LG------TLCAI 789 (863)
Q Consensus 763 l~~~l~~~-------~~~~-p~v~~vrg---------------------------------------~G------l~~~i 789 (863)
+.+.-.+. +.-. |. .+.+ .| ..+.+
T Consensus 461 L~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i 538 (755)
T 2vyc_A 461 MARLYKEFTADGSWFFKPWNKE--VVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSI 538 (755)
T ss_dssp HHHHHHHHHTTTCCCCEESSCS--EEECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEE
T ss_pred HHhccccccccccceeeccCch--hccccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEE
Confidence 64321100 1000 10 0100 12 22333
Q ss_pred EEccCCcCCCCc--hHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYG--SLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 790 el~~~~~~~~~~--~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
....-+....+. ...+..+.+.|.++||.+...+ +.++++.++..|+++++.++++|.+..+..+
T Consensus 539 ~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~~~~~v~~~~~~g~t~~~~~~l~~al~~~~~~~~ 606 (755)
T 2vyc_A 539 LAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYD 606 (755)
T ss_dssp ECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEECSSEEEEECCTTCCTTTTHHHHHHHHHHHHHHH
T ss_pred EcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeecCCCeEEEEECCCCCHHHHHHHHHHHHHHHHhhh
Confidence 332111000000 0123567888889999987544 8899999999999999999999988876553
No 234
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=98.95 E-value=6.2e-09 Score=116.80 Aligned_cols=192 Identities=15% Similarity=0.086 Sum_probs=117.6
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHH-cC--CeEEEecccccccccCCcchhhhcCCCCcEE--EeccccC-CC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQN-RK--IPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLT-GG 694 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~-~g--ilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLg-gG 694 (863)
+.++..| ++..|.+.. +||++ |+ +++|.||++. ++.. ..... ..+ .+++ +|||.++ .|
T Consensus 160 ~v~l~~p--~NPtG~~~~---------~l~~~~~~~~~~ii~De~y~-~~~~-~~l~~-~~~--~~i~~~S~SK~~g~~G 223 (391)
T 3bwn_A 160 IELVTSP--NNPDGTIRE---------TVVNRPDDDEAKVIHDFAYY-WPHY-TPITR-RQD--HDIMLFTFSKITGHAG 223 (391)
T ss_dssp EEEEESS--CTTTCCCCC---------CCC-----CCCEEEEECTTC-STTT-SCCCC-CBC--CSEEEEEHHHHHSCGG
T ss_pred EEEECCC--CCCCchhHH---------HHHHHhhcCCCEEEEeCCCC-CCCC-Ccccc-CCC--CeEEEEechhhcCCCc
Confidence 3445666 788888774 23444 66 9999999995 3211 11111 111 2333 7899886 67
Q ss_pred CCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc--------ChhhHHhHHHHHHHHHHHHHH
Q 002941 695 VIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK--------DPQTNHNIIPERRILRELWDL 765 (863)
Q Consensus 695 ~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~--------~~~l~~~l~~~~~~l~~~l~~ 765 (863)
+.+|++++ ++++++.+... ....+++.++++..++.++|+.-. -+++.+++++..+..++.+.
T Consensus 224 -lRiG~~~~~~~~l~~~l~~~------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 295 (391)
T 3bwn_A 224 -SRIGWALVKDKEVAKKMVEY------IIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLR- 295 (391)
T ss_dssp -GCEEEEEECCHHHHHHHHHH------HHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHH-
T ss_pred -cceEEEEecCHHHHHHHHHH------hcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHH-
Confidence 89999997 88998887641 122345678888888888887532 13345555555555555443
Q ss_pred HHHHHHhcCCCeeEe--------------cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec------CCE
Q 002941 766 ELIQQISSHRTVQRV--------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------GNV 825 (863)
Q Consensus 766 ~l~~~~~~~p~v~~v--------------rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~------g~~ 825 (863)
+.+.++|.+.-. ...|+++.+.+.+. ..+...|.++||.+.|+ .+.
T Consensus 296 ---~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~-----------~~~~~~l~~~gV~v~pg~~fg~~~~~ 361 (391)
T 3bwn_A 296 ---EVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE-----------TDLVSELRRHKVMSRAGERCGSDKKH 361 (391)
T ss_dssp ---HHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS-----------CCHHHHHHHTTEECEEGGGGTCCTTE
T ss_pred ---HHHHhCCCcccccCCccccccccccCCCcceEEEecCCcH-----------HHHHHHHHHCCEEEccCCCCCCCCCE
Confidence 334444432211 23355677777532 12455677899999984 368
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 826 IYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 826 lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
+|+... .+++++++++++|.+++++
T Consensus 362 iRis~~--~~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 362 VRVSML--SREDVFNVFLERLANMKLI 386 (391)
T ss_dssp EEEESC--SCHHHHHHHHHHHHSCC--
T ss_pred EEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 898744 5899999999999887654
No 235
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=98.93 E-value=2.2e-08 Score=113.86 Aligned_cols=204 Identities=12% Similarity=0.038 Sum_probs=115.4
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEe--cccccccccCCcchhhhcCCCCcEEEe-ccccC---
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD--EVFTGFWRLGVETTADLLGCVPDIACY-GKLLT--- 692 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~D--EV~TGfGRtG~~~a~e~~gv~PDivt~-sKgLg--- 692 (863)
++.+|++.-. +..|.+.+ +++|.++|++||+++|+| +. ++|..... ..+ .+|++++ +|.++
T Consensus 196 ~t~~v~i~~p--n~tG~~~~----l~~i~~la~~~g~~vivd~d~~--a~g~~~~~---~~~--g~D~~~~s~kk~~~~~ 262 (438)
T 1wyu_A 196 EVGAVVVQNP--NFLGALED----LGPFAEAAHGAGALFVAVADPL--SLGVLKPP---GAY--GADIAVGDGQSLGLPM 262 (438)
T ss_dssp TEEEEEEESS--CTTSBCCC----HHHHHHHHHHTTCEEEEECCTT--GGGTBCCH---HHH--TCSEEEEECTTTTCCC
T ss_pred CeEEEEEECC--CCCeEEec----HHHHHHHHHHcCCEEEEEechh--hccCcCCC---ccC--CCCEEEECCcccCCCc
Confidence 4566666552 56787775 999999999999999955 33 24332222 223 3799887 47432
Q ss_pred --CCCCCceeeeccHHHHHhhhcCCc--------cceee------------cccCCCc---cHHHHHHHHHHHHHhcChh
Q 002941 693 --GGVIPLAATLATNAVFDSFVGDSK--------LKALL------------HGHSYSA---HALGCAAAAKSIKWFKDPQ 747 (863)
Q Consensus 693 --gG~~Pigav~~~~~i~~~l~~~~~--------~~~~~------------~~~T~~~---~pla~AAalAaL~~l~~~~ 747 (863)
+| ..+|++++++++.+.+..... ...+. ...|+.. +.++..++...+..+.+++
T Consensus 263 ~~~G-p~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g 341 (438)
T 1wyu_A 263 GFGG-PHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEG 341 (438)
T ss_dssp GGGC-SCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCC-CCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHH
Confidence 33 357888999988776532100 00000 0122222 2232222223355443322
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEE--Eec--
Q 002941 748 TNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM--RPL-- 822 (863)
Q Consensus 748 l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~--~p~-- 822 (863)
.+++.+....+.+++. +.+++.+.+. +.+. ..+..+.+..+. ....+.+.|.++||.+ ++.
T Consensus 342 -~~~~~~~~~~~~~~l~----~~L~~~~g~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~L~~~gi~v~~~~~~~ 407 (438)
T 1wyu_A 342 -LREVALKSVEMAHKLH----ALLLEVPGVR-PFTPKPFFNEFALALPK--------DPEAVRRALAERGFHGATPVPRE 407 (438)
T ss_dssp -HHHHHHHHHHHHHHHH----HHHTTSTTCE-ECSCSSBCSEEEEECSS--------CHHHHHHHHHHTTCCCCEECCTT
T ss_pred -HHHHHHHHHHHHHHHH----HHHhcCCCeE-ECCCCCeEEEEEEeCCC--------CHHHHHHHHHHCCceeccccccc
Confidence 3344444445555443 3344554332 2222 222222232111 1567899999999998 442
Q ss_pred --CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 823 --GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 823 --g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
++.+|+++...+|++++++++++|++++
T Consensus 408 ~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 408 YGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp SCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred cCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 4789999888889999999999998754
No 236
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=98.70 E-value=1.5e-07 Score=97.56 Aligned_cols=100 Identities=16% Similarity=0.203 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHH
Q 002941 194 DSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273 (863)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~ 273 (863)
.+.+.+.++.+..+| |++||++.+++.. ....++...+ .+|+|+.....++.++...++.
T Consensus 98 ~~~l~~~l~~l~~~y-------------D~viiD~~~~~~~------~~~~~~~~ad-~vi~v~~~~~~~~~~~~~~~~~ 157 (237)
T 1g3q_A 98 PRKLPEVIKSLKDKF-------------DFILIDCPAGLQL------DAMSAMLSGE-EALLVTNPEISCLTDTMKVGIV 157 (237)
T ss_dssp GGGHHHHHHTTGGGC-------------SEEEEECCSSSSH------HHHHHHTTCS-EEEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-------------CEEEEECCCCcCH------HHHHHHHHCC-eEEEEecCCcccHHHHHHHHHH
Confidence 345555555555555 9999999876542 2344444444 5899999998999999999999
Q ss_pred HHhCCCcEEEEEEcCCCC----CCHHHHHHhhcCCCCeee-cCCCCC
Q 002941 274 LKLRGYDVVAVVFEDHGL----VNEVPLMSYLRNRVPVLV-LPPLPQ 315 (863)
Q Consensus 274 ~~~~~~~v~gvi~n~~~~----~~~~~~~~~~~~~~pvl~-~p~~~~ 315 (863)
++..+.++.|+|+|++.. .....+.+. .+.|+++ ||+.+.
T Consensus 158 l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~--~~~~~~~~Ip~~~~ 202 (237)
T 1g3q_A 158 LKKAGLAILGFVLNRYGRSDRDIPPEAAEDV--MEVPLLAVIPEDPA 202 (237)
T ss_dssp HHHTTCEEEEEEEEEETSCTTCCCHHHHHHH--HCSCEEEEEECCHH
T ss_pred HHhCCCceEEEEEecCCcccchhHHHHHHHH--hCccceeeCCCChH
Confidence 998899999999998733 335556555 3789998 988654
No 237
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=98.62 E-value=9.9e-07 Score=93.37 Aligned_cols=88 Identities=8% Similarity=-0.062 Sum_probs=62.1
Q ss_pred CCceEEEeCCCcccccCCCCCcHhHHh-hhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCC-------
Q 002941 220 MEILCIVETAGGVASPGPSGSLQCDLY-RPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL------- 291 (863)
Q Consensus 220 ~~d~~lvEGagg~~~p~~~~~~~~dla-~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~------- 291 (863)
.+|++||++.+|+..+. ...++ ...+ .+|+|+.....++.++..+++.++..++++.|+|+|++..
T Consensus 128 ~yD~ViID~pp~~~~~~-----~~~~~~~~aD-~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~ 201 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGDAP-----LTVMQDAKPT-GVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYFVCPNCGH 201 (262)
T ss_dssp SCSEEEEECCSSSSSHH-----HHHHHHHCCS-EEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCEECTTTCC
T ss_pred CCCEEEEECcCCCchHH-----HHHHhhccCC-eEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCccCCccccc
Confidence 46999999988764331 11111 1122 4888999999999999999999998899999999998631
Q ss_pred -------CCHHHHHHhhcCCCCeee-cCCCCC
Q 002941 292 -------VNEVPLMSYLRNRVPVLV-LPPLPQ 315 (863)
Q Consensus 292 -------~~~~~~~~~~~~~~pvl~-~p~~~~ 315 (863)
.....+.+. .+.|+++ ||+...
T Consensus 202 ~~~~~~~~~~~~~~~~--~g~~~~~~Ip~~~~ 231 (262)
T 2ph1_A 202 KSYIFGEGKGESLAKK--YNIGFFTSIPIEEE 231 (262)
T ss_dssp EECTTCCCCHHHHHHH--TTCSEEEECCBCHH
T ss_pred ccccccccHHHHHHHH--cCCCeEEEeeCchH
Confidence 224455554 4789998 877543
No 238
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=98.60 E-value=3.1e-06 Score=95.69 Aligned_cols=229 Identities=10% Similarity=0.029 Sum_probs=134.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv- 680 (863)
+.+|+.|++ .+++.+++|+..|- .. +|..+.+ +++|.++|++||+++++||+|-+.-+....+..+.+..
T Consensus 203 e~le~aI~e----~ga~~i~~V~~Ttt-~y-~p~~~dd---I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~G 273 (501)
T 3hl2_A 203 KAVEAKVQE----LGPDCILCIHSTTS-CF-APRVPDR---LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVG 273 (501)
T ss_dssp HHHHHHHHH----HCGGGEEEEEEECS-CC-TTBCCCC---HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHh----cCCCcEEEEEecCC-CC-CCccccc---HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcC
Confidence 556777764 23578999998874 22 3333333 99999999999999999999944322222221222222
Q ss_pred CCcEEEec--cccCCCCCCceeeec---cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHH
Q 002941 681 VPDIACYG--KLLTGGVIPLAATLA---TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (863)
Q Consensus 681 ~PDivt~s--KgLggG~~Pigav~~---~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~ 755 (863)
..|+++.| |-+ +.|++..+. ++++++.+... .-.+.++.|.. ..+.++..+-.+++ .++.+.
T Consensus 274 rAD~vVqS~HK~l---lvpIGG~ii~~~d~e~l~~~~~~-------yPGr~S~Spsl--dl~~tLL~lGr~Gy-~~ll~e 340 (501)
T 3hl2_A 274 RIDAFVQSLDKNF---MVPVGGAIIAGFNDSFIQEISKM-------YPGRASASPSL--DVLITLLSLGSNGY-KKLLKE 340 (501)
T ss_dssp CCCEEEEEHHHHH---CCCSSCEEEEESCHHHHHHHHHT-------SCSCBCSHHHH--HHHHHHHHHHHHHH-HHHHHH
T ss_pred CCcEEEecccccc---eeecCceEEEeCCHHHHHHHHHh-------CCCCCCCcHHH--HHHHHHHHHHHHHH-HHHHHH
Confidence 58999987 543 355554332 56777765431 12333444433 23344443423333 333333
Q ss_pred HHHHHHHHHHHHHHHHhcCC-CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcE---EEe----------
Q 002941 756 RRILRELWDLELIQQISSHR-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVY---MRP---------- 821 (863)
Q Consensus 756 ~~~l~~~l~~~l~~~~~~~p-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~---~~p---------- 821 (863)
...+.++|.+.+.++...++ .+.+...--.-+++.+...... .......+...|+.++|- +.+
T Consensus 341 ~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~---~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~ 417 (501)
T 3hl2_A 341 RKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEH---RDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGY 417 (501)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTT---TSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTE
T ss_pred HHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEeccccccc---ccccHHHHHHHHHhcCCCcceeecCCCceEECCe
Confidence 44444555555555555554 3445555666777777654211 112356778888887662 211
Q ss_pred ----cC--------CEEEEecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 822 ----LG--------NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 822 ----~g--------~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
+| .-+......-++++|||.++++|++++.++.+
T Consensus 418 ~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~ 463 (501)
T 3hl2_A 418 TFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRK 463 (501)
T ss_dssp EESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred eecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 11 34556666668999999999999999998764
No 239
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=98.59 E-value=4.1e-07 Score=97.98 Aligned_cols=78 Identities=12% Similarity=0.090 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHH
Q 002941 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (863)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~ 274 (863)
+.+.+.++.+.+.| |+|||.+..++.+ .....+++..+. +|+|+......+..+..+++.+
T Consensus 189 ~~l~~ll~~l~~~y-------------D~VIIDtpp~~~~-----~da~~l~~~aD~-vllVv~~~~~~~~~~~~~~~~l 249 (286)
T 3la6_A 189 ERFAELVNWASKNY-------------DLVLIDTPPILAV-----TDAAIVGRHVGT-TLMVARYAVNTLKEVETSLSRF 249 (286)
T ss_dssp HHHHHHHHHHHHHC-------------SEEEEECCCTTTC-----THHHHHTTTCSE-EEEEEETTTSBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-------------CEEEEcCCCCcch-----HHHHHHHHHCCe-EEEEEeCCCCcHHHHHHHHHHH
Confidence 56666677777777 9999999543322 234455555555 8899999999999999999999
Q ss_pred HhCCCcEEEEEEcCCCC
Q 002941 275 KLRGYDVVAVVFEDHGL 291 (863)
Q Consensus 275 ~~~~~~v~gvi~n~~~~ 291 (863)
++.|.++.|+|+|++..
T Consensus 250 ~~~g~~~~GvVlN~v~~ 266 (286)
T 3la6_A 250 EQNGIPVKGVILNSIFR 266 (286)
T ss_dssp HHTTCCCCEEEEEEECC
T ss_pred HhCCCCEEEEEEcCccc
Confidence 99999999999998743
No 240
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=98.58 E-value=1.5e-07 Score=99.28 Aligned_cols=101 Identities=13% Similarity=0.147 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHH
Q 002941 194 DSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273 (863)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~ 273 (863)
.+.+.+.+..+...| |++||++.+++.. ....++...+ .||+|+.....++.++...++.
T Consensus 97 ~~~l~~~l~~l~~~y-------------D~viiD~~~~~~~------~~~~~~~~ad-~vi~v~~~~~~~~~~~~~~~~~ 156 (263)
T 1hyq_A 97 PEKLEDVLTQIMEST-------------DILLLDAPAGLER------SAVIAIAAAQ-ELLLVVNPEISSITDGLKTKIV 156 (263)
T ss_dssp HHHHHHHHHHHHHTC-------------SEEEEECCSSSSH------HHHHHHHHSS-EEEEEECSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhC-------------CEEEEeCCCCCCh------HHHHHHHHCC-EEEEEeCCChhHHHHHHHHHHH
Confidence 345555666666665 9999999876542 2334444444 7889999988899999999999
Q ss_pred HHhCCCcEEEEEEcCCCCCCH----HHHHHhhcCCCCeee-cCCCCCC
Q 002941 274 LKLRGYDVVAVVFEDHGLVNE----VPLMSYLRNRVPVLV-LPPLPQD 316 (863)
Q Consensus 274 ~~~~~~~v~gvi~n~~~~~~~----~~~~~~~~~~~pvl~-~p~~~~~ 316 (863)
++..+.++.|+|+|++..... ..+.+. .+.|+++ ||+.+.+
T Consensus 157 l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~--~~~~~~~~Ip~~~~~ 202 (263)
T 1hyq_A 157 AERLGTKVLGVVVNRITTLGIEMAKNEIEAI--LEAKVIGLIPEDPEV 202 (263)
T ss_dssp HHHHTCEEEEEEEEEECTTTHHHHHHHHHHH--TTSCEEEEEECCHHH
T ss_pred HHhcCCCeeEEEEccCCcccccchHHHHHHH--hCCCeEEECCCCHHH
Confidence 988789999999999854432 333333 4789998 9886543
No 241
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=98.58 E-value=4.1e-07 Score=91.91 Aligned_cols=99 Identities=12% Similarity=0.019 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHH
Q 002941 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (863)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~ 274 (863)
+.+.+.+.++.++| |++||++.+++. . ....+....+. +|+|+.....+ ..+...++.+
T Consensus 63 ~~l~~~l~~l~~~y-------------D~viiD~~~~~~-~-----~~~~~l~~ad~-viiv~~~~~~~-~~~~~~~~~l 121 (206)
T 4dzz_A 63 EKDVYGIRKDLADY-------------DFAIVDGAGSLS-V-----ITSAAVMVSDL-VIIPVTPSPLD-FSAAGSVVTV 121 (206)
T ss_dssp HHHHHTHHHHTTTS-------------SEEEEECCSSSS-H-----HHHHHHHHCSE-EEEEECSCTTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-------------CEEEEECCCCCC-H-----HHHHHHHHCCE-EEEEecCCHHH-HHHHHHHHHH
Confidence 44555566655555 999999977652 2 23444444444 78888888888 8888888888
Q ss_pred HhC-----CCcEEEEEEcCCCCC--CHHHHHHhhcC-CCCee-e-cCCCCC
Q 002941 275 KLR-----GYDVVAVVFEDHGLV--NEVPLMSYLRN-RVPVL-V-LPPLPQ 315 (863)
Q Consensus 275 ~~~-----~~~v~gvi~n~~~~~--~~~~~~~~~~~-~~pvl-~-~p~~~~ 315 (863)
+.. +.++ ++|+|++... ....+++.++. +.|++ + ||....
T Consensus 122 ~~~~~~~~~~~~-~vv~N~~~~~~~~~~~~~~~l~~~~~~vl~~~Ip~~~~ 171 (206)
T 4dzz_A 122 LEAQAYSRKVEA-RFLITRKIEMATMLNVLKESIKDTGVKAFRTAITQRQV 171 (206)
T ss_dssp HTTSCGGGCCEE-EEEECSBCTTEEEEHHHHHHHHHHTCCBCSSCCBCCHH
T ss_pred HHHHHhCCCCcE-EEEEeccCCCchHHHHHHHHHHHcCCceeeccccccHH
Confidence 753 3566 9999998532 22334444432 78888 6 776543
No 242
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=98.56 E-value=2.2e-05 Score=89.42 Aligned_cols=230 Identities=11% Similarity=-0.002 Sum_probs=118.1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv- 680 (863)
+.+++.+++ .+.+.+++|++.|- ....|..-+ +++|.++|++||++|++||+|.+.-+....+.-+.+..
T Consensus 185 ~~le~aI~~----~~~~~~~~Vv~t~t-~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~ 255 (450)
T 3bc8_A 185 KAVEAKIQE----LGPEHILCLHSTTA-CFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG 255 (450)
T ss_dssp HHHHHHHHH----HCGGGEEEEEEESS-CCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHh----cCCCCEEEEEEECC-cCCCceecC----HHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhccc
Confidence 567777764 12357899999985 332334444 99999999999999999999954323211111122212
Q ss_pred CCcEEEec--cccCCCCCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHH
Q 002941 681 VPDIACYG--KLLTGGVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERR 757 (863)
Q Consensus 681 ~PDivt~s--KgLggG~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~ 757 (863)
..|++++| |.+..- ..-+.+.. +++..+.+... +.+ +-+.+|. .. ..+++..+-.+. +.++.+...
T Consensus 256 ~AD~~v~S~HK~l~a~-~~~~~l~~rd~~~~~~~~~~------~~g-~~s~Sps-L~-l~~~l~~~G~~g-~~~~i~~~~ 324 (450)
T 3bc8_A 256 RIDAFVQSLDKNFMVP-VGGAIIAGFNEPFIQDISKM------YPG-RASASPS-LD-VLITLLSLGCSG-YRKLLKERK 324 (450)
T ss_dssp CCCEEEEEHHHHHSCC-SSCEEEEESCHHHHHHHHHH------SCS-CBCSHHH-HH-HHHHHHHHHHHH-HHHHHHHHH
T ss_pred CCCEEEECCccCCCch-hccEEEEecCHHHHHHHHHH------hhc-CCcccHH-HH-HHHHHHHHHHHH-HHHHHHHHH
Confidence 57999887 765433 33345554 55555554321 111 1223442 22 222222221122 233322222
Q ss_pred HHHHHHHHHHHHHHhcCCC-eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCc-----------------EE
Q 002941 758 ILRELWDLELIQQISSHRT-VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGV-----------------YM 819 (863)
Q Consensus 758 ~l~~~l~~~l~~~~~~~p~-v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV-----------------~~ 819 (863)
.+.+++.+.+.+...++.. +.+....+.-.++.+..-.....+ ...++.-.++..|+ ++
T Consensus 325 ~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~---D~tkl~i~~~~~g~sG~~v~~~~~~~~~~~~~l 401 (450)
T 3bc8_A 325 EMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDK---AVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTF 401 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSC---HHHHHHHHHHHTTCCSCEEECSCCEEEETTEEE
T ss_pred HHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccC---CCceeEEEecCCCCccceeeecccccchhHHHH
Confidence 2333333344444333331 222222222233444321101111 23455556666552 11
Q ss_pred Ee--------cCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 820 RP--------LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 820 ~p--------~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.. ....+.+..++..+++++++++++|++.+.++.
T Consensus 402 ~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~ 444 (450)
T 3bc8_A 402 RGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVR 444 (450)
T ss_dssp ETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11 126677787888999999999999999876654
No 243
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=98.56 E-value=3.9e-07 Score=103.48 Aligned_cols=190 Identities=11% Similarity=0.056 Sum_probs=113.3
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccC-CCCCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLT-GGVIP 697 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLg-gG~~P 697 (863)
+.+++.| ++..|.+.+ +. ++ ++..|.||++- ...-.... +....+++ +|||.++ .| +.
T Consensus 199 ~v~l~~p--~NPtG~~~~--~~-------l~--~~~~i~d~~~~--~~~~s~~~---~~~~~~i~~~S~SK~~g~~G-~R 259 (427)
T 2hox_A 199 IEMVTSP--NNPEGLLRH--AV-------IK--GCKSIYDMVYY--WPHYTPIK---YKADEDILLFTMSKFTGHSG-SR 259 (427)
T ss_dssp EEEEESS--CTTTCCCCC--CS-------ST--TCEEEEECTTC--STTTSCCC---SCBCCSEEEEEHHHHTSCGG-GC
T ss_pred EEEEcCC--CCCcccccH--HH-------Hc--CCCEEEeeccc--CCCCCccc---cCCCceEEEEeChhcCCCCC-ce
Confidence 4455566 788887776 32 22 56778888772 11101111 11123454 6799887 67 89
Q ss_pred ceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc---------ChhhHHhHHHHHHHHHHHHHHHH
Q 002941 698 LAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK---------DPQTNHNIIPERRILRELWDLEL 767 (863)
Q Consensus 698 igav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~---------~~~l~~~l~~~~~~l~~~l~~~l 767 (863)
+|++++ ++++++.+... ....+++.++++..++.++|+... -+++.++.++..+..++. +
T Consensus 260 iG~~~~~~~~l~~~l~~~------~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----l 329 (427)
T 2hox_A 260 FGWALIKDESVYNNLLNY------MTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVN----I 329 (427)
T ss_dssp CEEEEECCHHHHHHHHHH------HHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHH----H
T ss_pred EEEEEECCHHHHHHHHHH------HHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHH----H
Confidence 999999 58998887641 122345677888887777776421 122233333333333333 3
Q ss_pred HHHHhcCCCeeE---------------ecccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec------CCE
Q 002941 768 IQQISSHRTVQR---------------VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL------GNV 825 (863)
Q Consensus 768 ~~~~~~~p~v~~---------------vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~------g~~ 825 (863)
.+.+++.+.+.- ...-|+++.+.+..+ ...++..|+ ++||+++|+ .+.
T Consensus 330 ~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~----------~~~~~~~ll~~~gI~v~pg~~f~~~~~~ 399 (427)
T 2hox_A 330 TALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE----------EDKDCYQTFQNGRINTQNGVGFEASSRY 399 (427)
T ss_dssp HHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG----------GGCSHHHHHHHTTEECEEGGGGTSCTTE
T ss_pred HHHHHhCcCccccccccccccccccccCCCCceEEEEECCCc----------HHHHHHHHHHHCCEEEcCCCccCCCCCE
Confidence 445555543321 112267777888532 123556665 799999984 367
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 826 IYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 826 lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+|+... .+++++++++++|.++++
T Consensus 400 ~Ris~~--~~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 400 VRLSLI--KTQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp EEEECS--SCHHHHHHHHHHHHHHHT
T ss_pred EEEEec--CCHHHHHHHHHHHHHHHh
Confidence 998754 588999999999988764
No 244
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=98.50 E-value=1.9e-06 Score=89.44 Aligned_cols=100 Identities=8% Similarity=-0.003 Sum_probs=71.3
Q ss_pred ChhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHH
Q 002941 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (863)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (863)
..+.+.+.++.+...| |++||++.+++.. ....++...+. +|+|+.....++..+...++
T Consensus 104 ~~~~l~~~l~~l~~~y-------------D~viiD~p~~~~~------~~~~~l~~ad~-viiv~~~~~~~~~~~~~~~~ 163 (245)
T 3ea0_A 104 EPERVSDLIHIAASFY-------------DYIIVDFGASIDH------VGVWVLEHLDE-LCIVTTPSLQSLRRAGQLLK 163 (245)
T ss_dssp CHHHHHHHHHHHHHHC-------------SEEEEEEESSCCT------THHHHGGGCSE-EEEEECSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-------------CEEEEeCCCCCch------HHHHHHHHCCE-EEEEecCcHHHHHHHHHHHH
Confidence 4456666666666666 9999999765422 23344444333 77888888888999999999
Q ss_pred HHHhCC--CcEEEEEEcCCCCC---CHHHHHHhhcCCCCeee-cCCCC
Q 002941 273 SLKLRG--YDVVAVVFEDHGLV---NEVPLMSYLRNRVPVLV-LPPLP 314 (863)
Q Consensus 273 ~~~~~~--~~v~gvi~n~~~~~---~~~~~~~~~~~~~pvl~-~p~~~ 314 (863)
.++..+ ....|+|+|++... ..+.+++. .+.|+++ +|+.+
T Consensus 164 ~l~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~--~~~~v~~~ip~~~ 209 (245)
T 3ea0_A 164 LCKEFEKPISRIEIILNRADTNSRITSDEIEKV--IGRPISKRIPQDE 209 (245)
T ss_dssp HHHTCSSCCSCEEEEEESTTSCTTSCHHHHHHH--HTSCEEEEECCCH
T ss_pred HHHHhCCCccceEEEEecCCCCCCCCHHHHHHH--hCCCeEEECCCCh
Confidence 998766 67799999998432 34566665 3789998 88865
No 245
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=98.50 E-value=6e-07 Score=97.27 Aligned_cols=77 Identities=16% Similarity=0.091 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHH
Q 002941 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (863)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~ 274 (863)
+.+.+.++.+.++| |+|||++..++.+. ...-+++..+ .+|+|+......++.+..+++.+
T Consensus 201 ~~l~~ll~~l~~~y-------------D~VIIDtpp~~~~~-----d~~~l~~~ad-~vilV~~~~~~~~~~~~~~~~~l 261 (299)
T 3cio_A 201 DRMRQLLEWANDHY-------------DLVIVDTPPMLAVS-----DAAVVGRSVG-TSLLVARFGLNTAKEVSLSMQRL 261 (299)
T ss_dssp HHHHHHHHHHHHHC-------------SEEEEECCCTTTCT-----HHHHHGGGCS-EEEEEEETTTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-------------CEEEEcCCCCchhH-----HHHHHHHHCC-EEEEEEcCCCChHHHHHHHHHHH
Confidence 45566666666666 99999997654321 1223333333 57889999999999999999999
Q ss_pred HhCCCcEEEEEEcCCC
Q 002941 275 KLRGYDVVAVVFEDHG 290 (863)
Q Consensus 275 ~~~~~~v~gvi~n~~~ 290 (863)
+..|.++.|+|+|++.
T Consensus 262 ~~~~~~~~GvVlN~~~ 277 (299)
T 3cio_A 262 EQAGVNIKGAILNGVI 277 (299)
T ss_dssp HHTTCCCCCEEEEECC
T ss_pred HhCCCCeEEEEEeCCc
Confidence 9999999999999874
No 246
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=98.47 E-value=2.3e-06 Score=95.73 Aligned_cols=195 Identities=10% Similarity=0.018 Sum_probs=118.5
Q ss_pred CCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHH
Q 002941 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFD 709 (863)
Q Consensus 632 ~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~ 709 (863)
..|++.|- +|+++|+++++|=+|+ +|.. .+-.+.+| ++++| |.+| . .-+|++.+++++.+
T Consensus 164 ~tG~~~pi---------i~~~~~~~~~vD~~q~-~g~~--~id~~~~~----~~~~s~~K~~g-p-~G~g~l~~~~~~l~ 225 (377)
T 3e77_A 164 VHGVEFDF---------IPDVKGAVLVCDMSSN-FLSK--PVDVSKFG----VIFAGAQKNVG-S-AGVTVVIVRDDLLG 225 (377)
T ss_dssp TTTEECSS---------CCCCTTCCEEEECTTT-TTSS--CCCGGGCS----EEEEEGGGTTS-C-TTCEEEEEETTSCS
T ss_pred chheEchh---------hhccCCCEEEEEcccc-cCCC--CCchhhcC----EEEEecccccC-C-CccEEEEEcHHHHh
Confidence 35777762 4789999999999995 5422 33444454 35554 8883 2 34677888887754
Q ss_pred hhhcCCc-cc---ee-ecccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee--E--
Q 002941 710 SFVGDSK-LK---AL-LHGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ--R-- 779 (863)
Q Consensus 710 ~l~~~~~-~~---~~-~~~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~--~-- 779 (863)
.+....+ .. .. ....++ +.+..++.+..++|+++.+.+=.+++.++.+.+.+++.+. +++.|.+. .
T Consensus 226 ~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~----L~~~~g~~~~~~~ 301 (377)
T 3e77_A 226 FALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEI----IDNSQGFYVCPVE 301 (377)
T ss_dssp CCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH----HHTSTTSEECCSC
T ss_pred hccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH----HHhcCCceecCCC
Confidence 4332100 00 00 012233 3455677777888998865422456666666666655443 44444322 1
Q ss_pred e-cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 780 V-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 780 v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
. ...+.++.+.+..-. ........+...+.++||.+++.. +.+|++.-..+|+||||.++++|++++++
T Consensus 302 ~~~rs~~ivsf~~~~~~----~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 302 PQNRSKMNIPFRIGNAK----GDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp GGGBCSSEEEEEESSTT----CCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCcEEEEEcCCCC----CchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 112456777776421 001122457777889999987641 56999987788999999999999988754
No 247
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=98.47 E-value=1e-06 Score=94.12 Aligned_cols=78 Identities=10% Similarity=0.002 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHH
Q 002941 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (863)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~ 274 (863)
+.+.+.++.+.++| |+|||++..++.+ .....+++..+ -+|+|+......+..+..+++.+
T Consensus 179 ~~l~~ll~~l~~~y-------------D~VIIDtpp~~~~-----~d~~~l~~~aD-~vilVv~~~~~~~~~~~~~~~~l 239 (271)
T 3bfv_A 179 RAFANLYDTLLMNY-------------NFVIIDTPPVNTV-----TDAQLFSKFTG-NVVYVVNSENNNKDEVKKGKELI 239 (271)
T ss_dssp HHHHHHHHHHHHHC-------------SEEEEECCCTTTC-----SHHHHHHHHHC-EEEEEEETTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-------------CEEEEeCCCCchH-----HHHHHHHHHCC-EEEEEEeCCCCcHHHHHHHHHHH
Confidence 45556666666666 9999999654432 22344555555 48899999999999999999999
Q ss_pred HhCCCcEEEEEEcCCCC
Q 002941 275 KLRGYDVVAVVFEDHGL 291 (863)
Q Consensus 275 ~~~~~~v~gvi~n~~~~ 291 (863)
++.|.++.|+|+|++..
T Consensus 240 ~~~~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 240 EATGAKLLGVVLNRMPK 256 (271)
T ss_dssp HTTTCEEEEEEEEEECC
T ss_pred HhCCCCEEEEEEeCCcC
Confidence 99999999999998743
No 248
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=98.47 E-value=1.2e-05 Score=89.40 Aligned_cols=190 Identities=8% Similarity=0.002 Sum_probs=118.7
Q ss_pred CCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHH
Q 002941 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFD 709 (863)
Q Consensus 632 ~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~ 709 (863)
..|.+.++ +|+ +|+++++|-+|+ +|.. .+-.+ ..|++++| |.+| - .-+|++.+++++.+
T Consensus 152 ~tG~~~~~---------i~~-~~~~~~vD~~q~-~g~~--~id~~----~~d~~~~s~~K~~g-p-~G~g~l~~~~~~~~ 212 (361)
T 3m5u_A 152 IYGTQYQN---------YPK-TKTPLIVDASSD-FFSR--KVDFS----NIALFYGGVQKNAG-I-SGLSCIFIRKDMLE 212 (361)
T ss_dssp TTTEECSS---------CCC-CSSCEEEECGGG-TTSS--CCCCT----TEEEEEEETTTTSS-C-TTCEEEEEEHHHHH
T ss_pred CcceeCCc---------ccc-cCCEEEEEcccc-cCCC--CCCcc----cCCEEEEechhccC-C-CccEEEEEcHHHHh
Confidence 34777552 344 499999999994 5432 12222 24888776 8883 2 34788999999987
Q ss_pred hhhcC--Cccce---e-ecccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe-eEe-
Q 002941 710 SFVGD--SKLKA---L-LHGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV-QRV- 780 (863)
Q Consensus 710 ~l~~~--~~~~~---~-~~~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v-~~v- 780 (863)
.+... ..... . ....++ +.|..++.+..++|+++.+.+=.+++.++.+.+.+++.+. +++.+.+ ...
T Consensus 213 ~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~----L~~~~g~~~~~~ 288 (361)
T 3m5u_A 213 RSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYEC----IDLSNGFYKGHA 288 (361)
T ss_dssp HHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH----HHTSTTSEEESS
T ss_pred hhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH----HHHCCCeeeccC
Confidence 76531 10000 0 012232 3456677788889999876512456666666777655444 4445522 111
Q ss_pred --c-ccceEEEEEEcc-CCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 781 --V-ALGTLCAIELQA-AGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 781 --r-g~Gl~~~iel~~-~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
. ....++.+.+.. .. ....+...|.++||.+++.. ..+|+++...+|++|||.++++|++..++
T Consensus 289 ~~~~rs~~ivsf~~~~~~~--------~~~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 289 DKKDRSLMNVSFNIAKNKD--------LEPLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp CGGGBCSSEEEEEESSCTT--------HHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHcCCeEEEEECCCchh--------hhHHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 1 123467777754 11 12357788889999987642 56999987788999999999999887654
No 249
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=98.37 E-value=1.1e-06 Score=98.80 Aligned_cols=179 Identities=10% Similarity=0.012 Sum_probs=105.7
Q ss_pred cCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCc-c---cee-ecccC
Q 002941 653 RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSK-L---KAL-LHGHS 725 (863)
Q Consensus 653 ~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~-~---~~~-~~~~T 725 (863)
+|+++++|=+|+ +|.. ..-.+.+| ++++| |.+| - .-+|++.+++++.+.+....+ . ... ..+..
T Consensus 191 ~g~~~~vDa~qs-~g~~--pidv~~~~----~~~~s~hK~lG-P-~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~ 261 (386)
T 3qm2_A 191 PEVVVTADFSST-ILSA--PLDVSRYG----VIYAGAQKNIG-P-AGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSM 261 (386)
T ss_dssp TTCCEEEECTTT-TTSS--CCCGGGCS----EEEEETTTTTC-C-TTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC---
T ss_pred CCCEEEEEcccc-cCCC--CCCccccC----EEEEecccccC-C-CccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCC
Confidence 899999999994 5432 33344444 34443 8883 2 337788888887544332100 0 000 01111
Q ss_pred C-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE---ecc-cceEEEEEEccCCcCCCC
Q 002941 726 Y-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR---VVA-LGTLCAIELQAAGCNAGY 800 (863)
Q Consensus 726 ~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~---vrg-~Gl~~~iel~~~~~~~~~ 800 (863)
+ +.|..++++..++|+++.+.+=.+++.++.+.+.+++.+.+ .+.+.... ... ...++.+.+.+..
T Consensus 262 ~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l----~~~~~~~~~~~~~~rs~~iv~f~~~~~~----- 332 (386)
T 3qm2_A 262 FNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVI----DNSDFYRNDVAQANRSRMNVPFQLADNT----- 332 (386)
T ss_dssp ----CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH----HTCSSEECCBCGGGBCSSEEEEEESSGG-----
T ss_pred CCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH----HHCCCcccCCCHHHcCceEEEEECCCcc-----
Confidence 2 23445677778888888654224566666666666654443 33333221 111 2346777775321
Q ss_pred chHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 801 GSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 801 ~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
....+...|.++||.++... +.+|++....+|+||||.++++|++..++
T Consensus 333 ---~~~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 333 ---LDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp ---GHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ---ccHHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 12456677889999987641 45999987788999999999999987654
No 250
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=98.35 E-value=1.3e-06 Score=91.74 Aligned_cols=102 Identities=8% Similarity=0.042 Sum_probs=70.5
Q ss_pred CChhHHHHHHHHHHH-ccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHH
Q 002941 192 VGDSKVIETLGKCLR-DGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISA 270 (863)
Q Consensus 192 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~ 270 (863)
...+.+.+.+..+.. .| |++||++.+|+.. ....+....+ .||+|+.....++..+...
T Consensus 97 ~~~~~~~~~l~~l~~~~y-------------D~viiD~p~~~~~------~~~~~l~~ad-~vi~v~~~~~~s~~~~~~~ 156 (260)
T 3q9l_A 97 LTREGVAKVLDDLKAMDF-------------EFIVCDSPAGIET------GALMALYFAD-EAIITTNPEVSSVRDSDRI 156 (260)
T ss_dssp SCHHHHHHHHHHHHHTTC-------------SEEEEECCSSSSH------HHHHHHHTCS-EEEEEECSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCC-------------CEEEEcCCCCCCH------HHHHHHHhCC-EEEEEecCChhHHHHHHHH
Confidence 455667777777766 66 9999999765532 2223333222 4889999998999999999
Q ss_pred HHHHHhCCC--------cEEEEEEcCCCC------C--CHHHHHHhhcCCCCeee-cCCCCC
Q 002941 271 YESLKLRGY--------DVVAVVFEDHGL------V--NEVPLMSYLRNRVPVLV-LPPLPQ 315 (863)
Q Consensus 271 ~~~~~~~~~--------~v~gvi~n~~~~------~--~~~~~~~~~~~~~pvl~-~p~~~~ 315 (863)
++.++..+. ...++|+|++.. . ....+.+. .++|+++ ||+.+.
T Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Ip~~~~ 216 (260)
T 3q9l_A 157 LGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEI--LRIKLVGVIPEDQS 216 (260)
T ss_dssp HHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTTSSCCHHHHHHH--HCSEEEEEEECCHH
T ss_pred HHHHHHhccccccccCCcceEEEEecCCccccccccccCHHHHHHH--hCCceEEecCCChh
Confidence 998876542 578999998732 1 22555555 3799998 998654
No 251
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=98.24 E-value=4.5e-06 Score=88.28 Aligned_cols=90 Identities=6% Similarity=-0.106 Sum_probs=56.8
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCc-EEEEEEcCCCC-CCHHHHH
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYD-VVAVVFEDHGL-VNEVPLM 298 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~-v~gvi~n~~~~-~~~~~~~ 298 (863)
+|++||.+..++.. .........+ -||+|+.....++..+...++.++..+.+ -+++|+|++.. .....+.
T Consensus 145 yD~viiD~pp~~~~------~~~~~l~~aD-~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~~~~~~~~ 217 (267)
T 3k9g_A 145 YDYIVIDTNPSLDV------TLKNALLCSD-YVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNRTHKTLF 217 (267)
T ss_dssp CSEEEEEECSSCSH------HHHHHHTTCS-EEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTTCSCCHHH
T ss_pred CCEEEEECcCCccH------HHHHHHHHCC-eEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCcchHHHHH
Confidence 49999999665421 2222333222 37788888888888888888888766433 24699998832 2344556
Q ss_pred HhhcCCCCeee-cCCCCCCC
Q 002941 299 SYLRNRVPVLV-LPPLPQDS 317 (863)
Q Consensus 299 ~~~~~~~pvl~-~p~~~~~~ 317 (863)
+.++.+.|+++ ||+.+.+.
T Consensus 218 ~~l~~~~~~~~~Ip~~~~~~ 237 (267)
T 3k9g_A 218 EILKTKDRFLGTISEREDLN 237 (267)
T ss_dssp HHHTTSTTEEEEEEC-----
T ss_pred HHHhcCcccceecCcHHHHH
Confidence 66656899999 99988765
No 252
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=98.24 E-value=4.4e-06 Score=90.36 Aligned_cols=88 Identities=11% Similarity=0.098 Sum_probs=58.6
Q ss_pred CCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHh----CCCcEEEEEEcCCCCC-CH
Q 002941 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHGLV-NE 294 (863)
Q Consensus 220 ~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~----~~~~v~gvi~n~~~~~-~~ 294 (863)
.+|++||.+.+++..+. ...++...+ -||+|+.....++..+...++.++. .+.++.|+|+|++... ..
T Consensus 156 ~yD~ViiD~p~~~~~~~-----~~~~l~~aD-~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~~~~ 229 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG-----FAAPLQHAD-QAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRATDEV 229 (307)
T ss_dssp SCSEEEEEECCSSCCGG-----GGGGGGTCS-EEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCCHHH
T ss_pred cCCEEEEeCCCccchHH-----HHHHHHHCC-EEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcHHHH
Confidence 46999999966544331 111222222 2888888888888888888888875 5678899999998543 22
Q ss_pred HHHHHhhcCCCCeee-cCCCCC
Q 002941 295 VPLMSYLRNRVPVLV-LPPLPQ 315 (863)
Q Consensus 295 ~~~~~~~~~~~pvl~-~p~~~~ 315 (863)
..+.+. .++|+++ ||+.+.
T Consensus 230 ~~~~~~--~g~~v~~~Ip~~~~ 249 (307)
T 3end_A 230 DRFCKE--TNFRRLAHMPDLDA 249 (307)
T ss_dssp HHHHHH--HTCCEEEEECCCHH
T ss_pred HHHHHH--cCCCceeeCCccHH
Confidence 233333 3899999 888544
No 253
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=98.20 E-value=1.9e-06 Score=99.88 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=36.5
Q ss_pred CCeEEEE-eCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcc
Q 002941 37 HPTFQIW-SANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (863)
Q Consensus 37 ~~~~~i~-~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (863)
++.|||+ ||.+++||++++++|++.|+ ++|++|.+||+
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~-----~~g~~v~~~k~ 41 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILE-----ARGLNVTIMKL 41 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHH-----TTTCCEEEEEE
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHH-----hCCceeeeeec
Confidence 4679999 99999999999999999999 99999999997
No 254
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=98.15 E-value=2.6e-05 Score=85.56 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=48.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCC-CCC-------------HH---HHHHhhcCCCCeeecCCCCC
Q 002941 253 GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG-LVN-------------EV---PLMSYLRNRVPVLVLPPLPQ 315 (863)
Q Consensus 253 vilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~-~~~-------------~~---~~~~~~~~~~pvl~~p~~~~ 315 (863)
+++|+.....+++++..+++.++..|+++.|+|+|++. +.. .. .+.+.+ .++|+..+|..+.
T Consensus 224 ~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~~~~q~~~l~~i~~~~-~~~~~~~vP~~~~ 302 (329)
T 2woo_A 224 FVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQIEELY-EDFHVVKVPQVPA 302 (329)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECCCSSCCCHHHHHHHHHHHHHHHHHHHHT-TTSEEEEEECCSS
T ss_pred EEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcCcccccCHHHHHHHHHHHHHHHHHHHhc-CCCCEEEecCCCC
Confidence 89999999999999999999999999999999999875 221 01 122222 3678866998765
Q ss_pred C
Q 002941 316 D 316 (863)
Q Consensus 316 ~ 316 (863)
.
T Consensus 303 e 303 (329)
T 2woo_A 303 E 303 (329)
T ss_dssp C
T ss_pred C
Confidence 3
No 255
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=98.14 E-value=5e-06 Score=92.02 Aligned_cols=67 Identities=18% Similarity=0.001 Sum_probs=49.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCC---C----------HHHHHHhhc-CCCCeee-cCCCCC
Q 002941 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV---N----------EVPLMSYLR-NRVPVLV-LPPLPQ 315 (863)
Q Consensus 251 ~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~---~----------~~~~~~~~~-~~~pvl~-~p~~~~ 315 (863)
..+|+|+....-++..+..+++.+++.|+++.|+|+|+.... . ...+++.-+ -+.+.++ ||..+.
T Consensus 238 ~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~iPl~~~ 317 (349)
T 3ug7_A 238 TAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLRT 317 (349)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEEEEEECCSS
T ss_pred ceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCC
Confidence 448999999999999999999999999999999999987432 1 111111100 2577777 999887
Q ss_pred CC
Q 002941 316 DS 317 (863)
Q Consensus 316 ~~ 317 (863)
..
T Consensus 318 e~ 319 (349)
T 3ug7_A 318 EA 319 (349)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 256
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=98.09 E-value=3.8e-06 Score=91.94 Aligned_cols=41 Identities=12% Similarity=-0.103 Sum_probs=37.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCC
Q 002941 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL 291 (863)
Q Consensus 251 ~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~ 291 (863)
..+|+|+....-++..+..+++.++..|+++.|+|+|++..
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~ 263 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLP 263 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCcc
Confidence 46899999999999999999999999999999999998743
No 257
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=98.04 E-value=3.6e-05 Score=78.64 Aligned_cols=88 Identities=7% Similarity=-0.025 Sum_probs=59.9
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHh-CCCcEEEEEEcCCCCCC---HHH
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL-RGYDVVAVVFEDHGLVN---EVP 296 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~-~~~~v~gvi~n~~~~~~---~~~ 296 (863)
+|++||.+.+++..+ ....+....+ -+|+|+.....++..+...++.++. .+.+ .++|+|++.... ...
T Consensus 68 yD~viiD~p~~~~~~-----~~~~~l~~aD-~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~~~~~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE-----DLEALADGCD-LLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPYPSKDGDE 140 (209)
T ss_dssp CSEEEEEEECCCSSS-----HHHHHHHTSS-EEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTTSCHHHH
T ss_pred CCEEEEeCCCCcCcH-----HHHHHHHHCC-EEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCccchHHHH
Confidence 399999997763333 2333444333 3778888888899999999999887 4666 789999985432 334
Q ss_pred HHHhhc-CCCCee-e-cCCCCC
Q 002941 297 LMSYLR-NRVPVL-V-LPPLPQ 315 (863)
Q Consensus 297 ~~~~~~-~~~pvl-~-~p~~~~ 315 (863)
+.+.++ .++|++ + ||+...
T Consensus 141 ~~~~l~~~g~~v~~~~Ip~~~~ 162 (209)
T 3cwq_A 141 ARQLLTTAGLPLFKRGIKRYSA 162 (209)
T ss_dssp HHHHHHHTTCCBCSSCCBCCTH
T ss_pred HHHHHHHcCCchhhccCCCcHH
Confidence 445443 378888 5 777543
No 258
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=98.01 E-value=1.6e-05 Score=83.75 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=35.5
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.|+.|.|+++..|+|||++++.|+.+|. ++|++|..+.
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la-----~~g~~VlliD 42 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLA-----RLGKRVLLVD 42 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHH-----HCCCCEEEEE
Confidence 5778999999999999999999999998 8899999987
No 259
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=97.96 E-value=4.6e-05 Score=81.55 Aligned_cols=93 Identities=10% Similarity=0.049 Sum_probs=55.5
Q ss_pred CCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHh----CCCcEEEEEEcCCCCCCHH
Q 002941 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHGLVNEV 295 (863)
Q Consensus 220 ~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~----~~~~v~gvi~n~~~~~~~~ 295 (863)
.+|++||.+.|++.. .....-++...---+|+|+.....++..+...++.++. .+.++.|+|+|++......
T Consensus 118 ~yD~ViID~~~~~~~----~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~ 193 (289)
T 2afh_E 118 DLDFVFYDVLGDVVC----GGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDRED 193 (289)
T ss_dssp TCSEEEEEEECSSCC----TTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHH
T ss_pred CCCEEEEeCCCcccc----chhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCchhHH
Confidence 469999999764321 11111121111223788888887777777666666543 3788999999988543322
Q ss_pred HHHHhhc--CCCCeee-cCCCCCC
Q 002941 296 PLMSYLR--NRVPVLV-LPPLPQD 316 (863)
Q Consensus 296 ~~~~~~~--~~~pvl~-~p~~~~~ 316 (863)
...+.+. .+.|+++ ||....+
T Consensus 194 ~~~~~l~~~~g~~~l~~Ip~~~~~ 217 (289)
T 2afh_E 194 ELIIALANKLGTQMIHFVPRDNVV 217 (289)
T ss_dssp HHHHHHHHHHTSCEEEEECCCHHH
T ss_pred HHHHHHHHHcCccccccCCCchhH
Confidence 2222221 3789998 8876443
No 260
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.93 E-value=6.7e-06 Score=85.31 Aligned_cols=100 Identities=14% Similarity=0.045 Sum_probs=67.8
Q ss_pred HHHHHHHHH-HHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHH
Q 002941 196 KVIETLGKC-LRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (863)
Q Consensus 196 ~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~ 274 (863)
.+.+.+..+ ..+| |++||.+.+++.. .........+ -+|+|+.....++..+....+.+
T Consensus 119 ~l~~~l~~l~~~~y-------------D~viiD~pp~~~~------~~~~~l~~aD-~viiv~~~~~~s~~~~~~~~~~~ 178 (254)
T 3kjh_A 119 FLGSVVSALFLDKK-------------EAVVMDMGAGIEH------LTRGTAKAVD-MMIAVIEPNLNSIKTGLNIEKLA 178 (254)
T ss_dssp HHHHHHHHHHHTCC-------------SEEEEEECTTCTT------CCHHHHTTCS-EEEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCC-------------CEEEEeCCCcccH------HHHHHHHHCC-EEEEecCCCHHHHHHHHHHHHHH
Confidence 356666666 5555 9999999765532 2222232222 37888888888888888888888
Q ss_pred HhCCCcEEEEEEcCCCC-CCHHHHHHhhcCCCCeee-cCCCCCC
Q 002941 275 KLRGYDVVAVVFEDHGL-VNEVPLMSYLRNRVPVLV-LPPLPQD 316 (863)
Q Consensus 275 ~~~~~~v~gvi~n~~~~-~~~~~~~~~~~~~~pvl~-~p~~~~~ 316 (863)
+..++...++|+|++.. ...+.+++.+ .+.++.+ ||+.+.+
T Consensus 179 ~~~~~~~~~~v~N~~~~~~~~~~~~~~~-~~~~~~~~Ip~~~~~ 221 (254)
T 3kjh_A 179 GDLGIKKVRYVINKVRNIKEEKLIKKHL-PEDKILGIIPYNELF 221 (254)
T ss_dssp HHHTCSCEEEEEEEECCHHHHHHHHHHS-CGGGEEEEEECCHHH
T ss_pred HHcCCccEEEEEeCCCChhHHHHHHHHh-cCCcccccccCcHHH
Confidence 88888889999998853 2344556654 3578888 8885543
No 261
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=97.91 E-value=3.5e-05 Score=81.31 Aligned_cols=92 Identities=11% Similarity=0.149 Sum_probs=56.7
Q ss_pred CCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHh----CCCcEEEEEEcCCCCCC-H
Q 002941 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHGLVN-E 294 (863)
Q Consensus 220 ~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~----~~~~v~gvi~n~~~~~~-~ 294 (863)
.+|++||++.+++.. ......++...---+|+|+.....++..+...++.++. .+.++.|+|+|++.... .
T Consensus 115 ~yD~iiiD~~~~~~~----~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~ 190 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVC----GGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEY 190 (269)
T ss_dssp TCSEEEEEEECSSCS----TTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCH
T ss_pred CCCEEEEeCCchhhh----hhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcchhH
Confidence 469999999764321 11222232223334888888887788877766666653 26788999999884322 2
Q ss_pred HHHHHhhc-CCCCeee-cCCCCC
Q 002941 295 VPLMSYLR-NRVPVLV-LPPLPQ 315 (863)
Q Consensus 295 ~~~~~~~~-~~~pvl~-~p~~~~ 315 (863)
..+++..+ .+.|+++ ||+...
T Consensus 191 ~~~~~l~~~~~~~v~~~Ip~~~~ 213 (269)
T 1cp2_A 191 ELLDAFAKELGSQLIHFVPRSPM 213 (269)
T ss_dssp HHHHHHHHHHTCCEEEEECCCHH
T ss_pred HHHHHHHHHcCCcccccCCCCcH
Confidence 22222211 3789998 888644
No 262
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=97.89 E-value=2.7e-05 Score=90.34 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=36.4
Q ss_pred CCeEEEE-eCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcc
Q 002941 37 HPTFQIW-SANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (863)
Q Consensus 37 ~~~~~i~-~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (863)
++.|||+ ||.+++||++++++|++.|+ ++|++|.+||+
T Consensus 12 ~~~i~v~gg~~s~~gk~~~~~~~~~~l~-----~~g~~v~~~k~ 50 (550)
T 1vco_A 12 RKYVFITGGVVSSLGKGILTSSLGALLR-----ARGYRVTAIKI 50 (550)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHH-----TTTCCEEEEEE
T ss_pred eeEEEEeCCcccCcchHHHHHHHHHHHH-----hCCceeeEeec
Confidence 4679999 99999999999999999999 99999999997
No 263
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=97.88 E-value=7e-06 Score=97.16 Aligned_cols=71 Identities=10% Similarity=-0.011 Sum_probs=51.8
Q ss_pred CCceEEEeCCCccccc----CCCC------------CcHhHHhhhc----CCCEEEEECCCCCcHHHHHHHHHHHHhCCC
Q 002941 220 MEILCIVETAGGVASP----GPSG------------SLQCDLYRPF----RLPGILVGDGRLGGISGTISAYESLKLRGY 279 (863)
Q Consensus 220 ~~d~~lvEGagg~~~p----~~~~------------~~~~dla~~l----~~pvilV~~~~~g~i~~~~~~~~~~~~~~~ 279 (863)
++|++||+++++...+ +++. ....++...+ -..+|+|+.....+++++..+++.++..|+
T Consensus 440 ~~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~ 519 (589)
T 1ihu_A 440 GKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHFTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGI 519 (589)
T ss_dssp GTSEEEESCCCCHHHHHHHHHC------------------CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEcCCCCccHHHHHHhHHHHHHHHHHhcccchHHHHHHHHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCCC
Confidence 4699999999874322 1100 0122333322 257999999999999999999999999999
Q ss_pred cEEEEEEcCCC
Q 002941 280 DVVAVVFEDHG 290 (863)
Q Consensus 280 ~v~gvi~n~~~ 290 (863)
++.|+|+|++.
T Consensus 520 ~~~gvVvN~~~ 530 (589)
T 1ihu_A 520 HPWGWIINNSL 530 (589)
T ss_dssp CCCEEEEEEES
T ss_pred CCCEEEEeCCc
Confidence 99999999873
No 264
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.87 E-value=0.00018 Score=81.57 Aligned_cols=36 Identities=19% Similarity=0.113 Sum_probs=32.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
...++|+|. +|+||||+++.|+.+|. ++|++|..+.
T Consensus 100 p~vIlivG~-~G~GKTTt~~kLA~~l~-----~~G~kVllv~ 135 (443)
T 3dm5_A 100 PTILLMVGI-QGSGKTTTVAKLARYFQ-----KRGYKVGVVC 135 (443)
T ss_dssp SEEEEEECC-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred CeEEEEECc-CCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 346889998 99999999999999999 8999998876
No 265
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=97.87 E-value=5.3e-05 Score=89.61 Aligned_cols=39 Identities=13% Similarity=-0.020 Sum_probs=36.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCC
Q 002941 253 GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL 291 (863)
Q Consensus 253 vilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~ 291 (863)
+|+|+.....+++++..+++.++..|+++.|||+|++..
T Consensus 201 vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~ 239 (589)
T 1ihu_A 201 LVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLP 239 (589)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECC
T ss_pred EEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcC
Confidence 899999999999999999999999999999999998843
No 266
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=97.84 E-value=2e-05 Score=84.53 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=33.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.|.|+++..|+|||++++.|+.+|. ++|++|..+.
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La-----~~G~~VlliD 40 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALL-----YGGAKVAVID 40 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 47999999999999999999999999 8899998876
No 267
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.71 E-value=0.00011 Score=78.78 Aligned_cols=66 Identities=11% Similarity=-0.093 Sum_probs=44.9
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHh------CCCcEEEEEEcCCCCCC
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL------RGYDVVAVVFEDHGLVN 293 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~------~~~~v~gvi~n~~~~~~ 293 (863)
+|++||.+.+++.... .......+ -||+|+.....++..+...++.++. .++++.|+|+|++....
T Consensus 155 yD~IiiD~pp~~~~~~------~~~l~~aD-~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 155 YDLIIIDTVPTPSVYT------NNAIVASD-YVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp CSEEEEEECSSCSHHH------HHHHHHCS-EEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred CCEEEEECCCCccHHH------HHHHHHCC-eEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 4999999977653321 11112222 2778888888888887777777654 47899999999985543
No 268
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.64 E-value=0.00031 Score=79.83 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=31.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCC-CCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-NKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~-g~~v~~~K 78 (863)
...|.|+|. +|+||||+++.|+.+|. ++ |++|..+.
T Consensus 100 ~~vI~ivG~-~GvGKTT~a~~LA~~l~-----~~~G~kVllvd 136 (433)
T 2xxa_A 100 PAVVLMAGL-QGAGKTTSVGKLGKFLR-----EKHKKKVLVVS 136 (433)
T ss_dssp SEEEEEECS-TTSSHHHHHHHHHHHHH-----HTSCCCEEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HhcCCeEEEEe
Confidence 346888886 89999999999999998 77 99998877
No 269
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.38 E-value=0.0018 Score=73.22 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=33.9
Q ss_pred CCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 30 PLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 30 ~~~~~~~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
++.+. ....+.|+|. +|+||||++..|+..+. .+|.+|....
T Consensus 92 ~i~l~-~~~vi~i~G~-~GsGKTT~~~~LA~~l~-----~~g~~Vllvd 133 (425)
T 2ffh_A 92 LPVLK-DRNLWFLVGL-QGSGKTTTAAKLALYYK-----GKGRRPLLVA 133 (425)
T ss_dssp CCCCC-SSEEEEEECC-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred cccCC-CCeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEee
Confidence 44444 3446888887 89999999999999998 7899998876
No 270
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=97.34 E-value=0.0019 Score=71.43 Aligned_cols=38 Identities=13% Similarity=-0.004 Sum_probs=35.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCC
Q 002941 253 GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG 290 (863)
Q Consensus 253 vilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~ 290 (863)
+|+|+.....++..+...++.|+..|+++.|+|+|++.
T Consensus 238 ~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 238 FVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred EEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCC
Confidence 89999999999999999999999999999999999875
No 271
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=97.31 E-value=0.0012 Score=73.41 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=51.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCCCHHHHHHhhcCCCCeeecCCCCCC
Q 002941 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQD 316 (863)
Q Consensus 251 ~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~~~~~~~~~~~~~~pvl~~p~~~~~ 316 (863)
.-++||+....-++..+..+++.+++.|+++.|+|+|+ ++..+.+.+.+ .++||..+|..+..
T Consensus 215 t~~vlVt~pe~~sl~ea~r~~~~L~~~gi~v~gvVvN~--~~~l~~i~~~F-~~~~v~~vpl~~~e 277 (374)
T 3igf_A 215 VAAFLVTTADPLEVVSVRYLWGSAQQIGLTIGGVIQVS--SQTEGDLSAEF-TPLSVTVVPDVTKG 277 (374)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHHHHTCCEEEEEECC--CSCCCCCGGGS-TTSCEEECCCCBTT
T ss_pred eEEEEEECCCccHHHHHHHHHHHHHHcCCCccEEEEcC--HHHHHHHHHhc-CCCceEECCCCChh
Confidence 55899999999999999999999999999999999999 22333444443 47899889987765
No 272
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=97.28 E-value=0.0014 Score=71.93 Aligned_cols=64 Identities=14% Similarity=0.077 Sum_probs=49.1
Q ss_pred CEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCC-CC---C--------------HHHHHHhhcCC-CCeeecCC
Q 002941 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG-LV---N--------------EVPLMSYLRNR-VPVLVLPP 312 (863)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~-~~---~--------------~~~~~~~~~~~-~pvl~~p~ 312 (863)
-+++|+....-.+..+.-+++.|++.|+++.|+|+|+.. ++ . .+.+.+.+ .+ +|+.-+|.
T Consensus 224 ~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~-~~~~~~~~~pl 302 (334)
T 3iqw_A 224 TFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELY-DEEFNVVKMPL 302 (334)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHH-TTTSEEEEEEC
T ss_pred eEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhc-cCCCCEEEecC
Confidence 489999999889999999999999999999999999874 21 1 11222233 34 88888998
Q ss_pred CCCC
Q 002941 313 LPQD 316 (863)
Q Consensus 313 ~~~~ 316 (863)
.+.-
T Consensus 303 ~~~e 306 (334)
T 3iqw_A 303 LVEE 306 (334)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8664
No 273
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=97.27 E-value=0.00059 Score=75.91 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=35.1
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.++.|.|++.-.|+|||++|+.|+.+|. ++|++|..+-
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~La-----~~g~rVlliD 179 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIAHA-----NMGKKVFYLN 179 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHHHH-----HHTCCEEEEE
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHHH-----hCCCCEEEEE
Confidence 4778999999999999999999999998 8899998876
No 274
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.81 E-value=0.0028 Score=62.62 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=33.6
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.|+.+.|+| .+|+|||+++..|++.|. ++|++|+.+|
T Consensus 3 ~~~~i~i~G-~sGsGKTTl~~~L~~~l~-----~~g~~v~~ik 39 (169)
T 1xjc_A 3 AMNVWQVVG-YKHSGKTTLMEKWVAAAV-----REGWRVGTVK 39 (169)
T ss_dssp -CCEEEEEC-CTTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCEEEEEEC-CCCCCHHHHHHHHHHhhH-----hcCCeeeEEE
Confidence 467899999 579999999999999998 8899999999
No 275
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=96.64 E-value=0.014 Score=64.24 Aligned_cols=64 Identities=14% Similarity=0.058 Sum_probs=48.7
Q ss_pred CEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCCC-----HH--------------HHHHhhcCCCCeeecCC
Q 002941 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVN-----EV--------------PLMSYLRNRVPVLVLPP 312 (863)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~~-----~~--------------~~~~~~~~~~pvl~~p~ 312 (863)
-+|+|+....-.+..+..+++.++..|+++.|+|+|++.... .. .+.+.+ .++|+.-+|.
T Consensus 233 ~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~-~~~~~~~~pl 311 (348)
T 3io3_A 233 TFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELY-EDYHLVKMPL 311 (348)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHT-TTSEEEEEEC
T ss_pred EEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHc-cCCCEEEecC
Confidence 489999999889999999999999999999999999874321 11 122222 3678888888
Q ss_pred CCCC
Q 002941 313 LPQD 316 (863)
Q Consensus 313 ~~~~ 316 (863)
.+.-
T Consensus 312 ~~~e 315 (348)
T 3io3_A 312 LGCE 315 (348)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7753
No 276
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.59 E-value=0.0089 Score=67.67 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=31.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
...++++|. +|+||||++..|+..|. .+|.+|...-
T Consensus 97 ~~vI~lvG~-~GsGKTTt~~kLA~~l~-----~~G~kVllv~ 132 (433)
T 3kl4_A 97 PFIIMLVGV-QGSGKTTTAGKLAYFYK-----KRGYKVGLVA 132 (433)
T ss_dssp SEEEEECCC-TTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 346788887 79999999999999999 8899998765
No 277
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=96.41 E-value=0.019 Score=63.38 Aligned_cols=37 Identities=22% Similarity=0.426 Sum_probs=34.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|+.|.|++.-.|||||++|+.|+.+|. ++|+||..+-
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA-----~~G~rVLlID 37 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFA-----LQGKRVLYVD 37 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHH-----hCCCcEEEEE
Confidence 678999999999999999999999998 8999998876
No 278
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.40 E-value=0.038 Score=59.93 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=32.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.|-|+| --||||||+|.-|+.+|. +.|+||..+-
T Consensus 48 aKVIAIaG-KGGVGKTTtavNLA~aLA-----~~GkkVllID 83 (314)
T 3fwy_A 48 AKVFAVYG-KGGIGKSTTSSNLSAAFS-----ILGKRVLQIG 83 (314)
T ss_dssp CEEEEEEC-STTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred ceEEEEEC-CCccCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 45788888 789999999999999999 9999998876
No 279
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=96.29 E-value=0.02 Score=64.67 Aligned_cols=183 Identities=15% Similarity=0.084 Sum_probs=103.8
Q ss_pred HHHHHHHHHHcCCeEEEecccc-cccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccH--------------
Q 002941 643 QRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATN-------------- 705 (863)
Q Consensus 643 L~~Lrelc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~-------------- 705 (863)
++++|++|++.|++|++|=+|. |+--.|. +-. -+. ..|+||.+ |.|.| -.-|.+++++
T Consensus 220 ~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~-~ps-P~~-~ADvVTtTTHKTLrG--PrGG~Il~~~~~~~~~~k~~~~~~ 294 (490)
T 3ou5_A 220 YARMREVCDEVKAHLLADMAHISGLVAAKV-IPS-PFK-HADIVTTTTHKTLRG--ARSGLIFYRKGVKAVDPKTGREIP 294 (490)
T ss_dssp HHHHHHHHHHHTCEEEEECGGGHHHHHTTS-SCC-GGG-TCSEEEEESSSTTCS--CSCEEEEEECSEEEECC--CCEEE
T ss_pred HHHHHHHHhhcccEEEechhhhhhhhcccc-cCC-ccc-cceEEeccccccccC--CCceEEEeccccccccccccchhH
Confidence 8999999999999999999975 3311121 111 111 26999765 99976 2344566655
Q ss_pred -HHHHhhhcCCccceeecccCCCcc-HHHHHHHHHHHHHhcCh---hhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 002941 706 -AVFDSFVGDSKLKALLHGHSYSAH-ALGCAAAAKSIKWFKDP---QTNHNIIPERRILRELWDLELIQQISSHRTVQRV 780 (863)
Q Consensus 706 -~i~~~l~~~~~~~~~~~~~T~~~~-pla~AAalAaL~~l~~~---~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v 780 (863)
++.+.+.. ++ +-++.+|+ ...+||-..++....++ ++..++.++++.|.+.|.++. +..|.
T Consensus 295 ~~~~kkin~-----aV-FPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G------~~vvs-- 360 (490)
T 3ou5_A 295 YTFEDRINF-----AV-FPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERG------YSLVS-- 360 (490)
T ss_dssp CCCHHHHHH-----HH-TTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT------CEEGG--
T ss_pred HHHHHHHHh-----hc-CccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCC------Ceeec--
Confidence 33444432 11 12223332 22333222223332233 345777788877776553322 22221
Q ss_pred ccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE----ec------CCEEEEecCCC----CcHHHHHHHHHH
Q 002941 781 VAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR----PL------GNVIYLMCGPC----SSPEVCSQLLLK 845 (863)
Q Consensus 781 rg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~----p~------g~~lr~~ppl~----~t~eeid~~v~~ 845 (863)
.|. --++.+++.... .......+.|-+.||.+. |+ ...||+-.|.. +.++|++++.+.
T Consensus 361 GgTdnHlvLvDl~~~g-------~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~ 433 (490)
T 3ou5_A 361 GGTDNHLVLVDLRPKG-------LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDF 433 (490)
T ss_dssp GSCSSSEEEEECGGGT-------CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCceEEEEeccccC-------CCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHH
Confidence 111 135566665432 014455667778899885 22 25789876664 478999999999
Q ss_pred HHHHHH
Q 002941 846 LYQRLE 851 (863)
Q Consensus 846 L~~~l~ 851 (863)
|.+++.
T Consensus 434 I~~~l~ 439 (490)
T 3ou5_A 434 IDEGVN 439 (490)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988875
No 280
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.14 E-value=0.019 Score=66.31 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=31.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
...|.|+|. +||||||++..|+..|. ++|++|...-
T Consensus 101 ~~vI~ivG~-~GvGKTTl~~kLA~~l~-----~~G~kVllVd 136 (504)
T 2j37_W 101 QNVIMFVGL-QGSGKTTTCSKLAYYYQ-----RKGWKTCLIC 136 (504)
T ss_dssp -EEEEEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----hCCCeEEEEe
Confidence 346888998 79999999999999998 7899998775
No 281
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.94 E-value=0.13 Score=55.20 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=30.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
...+.|+|. +|+||||++..|+..+.. ++|++|.+.-
T Consensus 105 g~vi~lvG~-~GsGKTTl~~~LA~~l~~----~~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGS-TGAGKTTTLAKLAAISML----EKHKKIAFIT 141 (296)
T ss_dssp SSEEEEEES-TTSSHHHHHHHHHHHHHH----TTCCCEEEEE
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHHH----hcCCEEEEEe
Confidence 457899998 699999999999999871 3798888765
No 282
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.73 E-value=0.12 Score=56.19 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=31.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
...+.|+|. +|+||||++..|+..+. ..|.+|...-
T Consensus 105 ~~vI~ivG~-~G~GKTT~~~~LA~~l~-----~~g~kVllid 140 (320)
T 1zu4_A 105 LNIFMLVGV-NGTGKTTSLAKMANYYA-----ELGYKVLIAA 140 (320)
T ss_dssp CEEEEEESS-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 346899998 99999999999999998 7788887653
No 283
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.70 E-value=0.14 Score=55.05 Aligned_cols=42 Identities=12% Similarity=-0.005 Sum_probs=32.4
Q ss_pred CCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 31 LDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 31 ~~~~~~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.+......+.|+|. +|+|||+++..|+..+. .+|.+|...-
T Consensus 92 i~~~~~~~vi~i~G~-~G~GKTT~~~~la~~~~-----~~g~~v~l~~ 133 (297)
T 1j8m_F 92 VIPDKIPYVIMLVGV-QGTGKTTTAGKLAYFYK-----KKGFKVGLVG 133 (297)
T ss_dssp CSCSSSSEEEEEECS-SCSSTTHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred cccCCCCeEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 444333446778885 89999999999999998 7788887654
No 284
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.48 E-value=0.051 Score=61.53 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=31.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
..+.|+|. +|+|||+++..|+..+. ++|++|.+.-
T Consensus 100 ~vI~ivG~-~GvGKTTla~~La~~l~-----~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGI-QGSGKTTTAAKLARYIQ-----KRGLKPALIA 134 (432)
T ss_dssp CCEEEECC-SSSSTTHHHHHHHHHHH-----HHHCCEEEEC
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 46899997 89999999999999998 8899998775
No 285
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=95.28 E-value=0.012 Score=65.85 Aligned_cols=43 Identities=9% Similarity=0.130 Sum_probs=25.3
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCC-CCCCCCceeEEc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSP-TSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~-~~~~g~~v~~~K 78 (863)
.++.|.|++.-.|+|||++|+.|+.+|..+. ..++|++|...-
T Consensus 110 ~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD 153 (403)
T 3ez9_A 110 SPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVID 153 (403)
T ss_dssp SCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEE
T ss_pred CceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEe
Confidence 4678999999999999999999999996100 002588887765
No 286
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.16 E-value=0.23 Score=53.18 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=32.5
Q ss_pred CCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 30 PLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 30 ~~~~~~~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
++.+. ....+.|+|. +|+|||+++..|+..+. ..|.+|...-
T Consensus 92 ~i~~~-~~~~i~i~g~-~G~GKTT~~~~la~~~~-----~~~~~v~l~~ 133 (295)
T 1ls1_A 92 LPVLK-DRNLWFLVGL-QGSGKTTTAAKLALYYK-----GKGRRPLLVA 133 (295)
T ss_dssp CCCCC-SSEEEEEECC-TTTTHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred eeecC-CCeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEec
Confidence 44444 4456888885 79999999999999998 7788887653
No 287
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.91 E-value=0.15 Score=50.88 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=23.6
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.|+.|+|+|. +|+||||++..|++.|.
T Consensus 24 ~~~~i~l~G~-~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGY-MGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECC-TTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcC-CCCCHHHHHHHHHHHcC
Confidence 4567999998 99999999999998874
No 288
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.87 E-value=2.1 Score=49.04 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=27.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
.+.|.|. +|+||||+...|+..++ ..+.+|.+.
T Consensus 295 VI~LVGp-NGSGKTTLl~~LAgll~-----~~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGV-NGVGKTTTIGKLARQFE-----QQGKSVMLA 327 (503)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred EEEEECC-CcccHHHHHHHHHHHhh-----hcCCeEEEe
Confidence 5889999 79999999999999987 566677654
No 289
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.86 E-value=0.19 Score=49.60 Aligned_cols=36 Identities=17% Similarity=0.143 Sum_probs=32.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|+.+.|+| -+|+|||++...|+..+. ..|++|+.+|
T Consensus 6 ~~~i~i~G-~sGsGKTTl~~~l~~~l~-----~~g~~v~~i~ 41 (174)
T 1np6_A 6 IPLLAFAA-WSGTGKTTLLKKLIPALC-----ARGIRPGLIK 41 (174)
T ss_dssp CCEEEEEC-CTTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred ceEEEEEe-CCCCCHHHHHHHHHHhcc-----ccCCceeEEe
Confidence 67899999 589999999999999998 7899999888
No 290
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.80 E-value=0.13 Score=50.65 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=32.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (863)
|+.+.|+| .+|+||||++..|++.+. ..|++++.+|.
T Consensus 2 ~~~v~IvG-~SGsGKSTL~~~L~~~~~-----~~g~~~G~I~~ 38 (171)
T 2f1r_A 2 SLILSIVG-TSDSGKTTLITRMMPILR-----ERGLRVAVVKR 38 (171)
T ss_dssp -CEEEEEE-SCHHHHHHHHHHHHHHHH-----HTTCCEEEEEC
T ss_pred ceEEEEEC-CCCCCHHHHHHHHHHHhh-----hcCCceEEEEE
Confidence 56799999 689999999999999998 77889999984
No 291
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.57 E-value=0.29 Score=47.69 Aligned_cols=35 Identities=11% Similarity=0.002 Sum_probs=30.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
|+.|+|+|. .|+||||++..|++.|. ..|+.+.++
T Consensus 1 M~~I~i~G~-~GsGKsT~~~~L~~~l~-----~~g~~~~~~ 35 (194)
T 1nks_A 1 MKIGIVTGI-PGVGKSTVLAKVKEILD-----NQGINNKII 35 (194)
T ss_dssp CEEEEEEEC-TTSCHHHHHHHHHHHHH-----TTTCCEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----hcCceEEEE
Confidence 456899998 89999999999999998 778888776
No 292
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.12 E-value=3.6 Score=44.49 Aligned_cols=34 Identities=18% Similarity=0.043 Sum_probs=28.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
..+.|.|. +|+||||+...|+..++ ..+.+|.+.
T Consensus 130 ~vi~lvG~-nGaGKTTll~~Lag~l~-----~~~g~V~l~ 163 (328)
T 3e70_C 130 YVIMFVGF-NGSGKTTTIAKLANWLK-----NHGFSVVIA 163 (328)
T ss_dssp EEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHH-----hcCCEEEEE
Confidence 35888998 99999999999999998 667677654
No 293
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.05 E-value=1.5 Score=47.05 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=29.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.|.+-.+|+|||++++-++.... .+|.+|.||=
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a-----~~g~~vl~~s 103 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMS-----DNDDVVNLHS 103 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH-----TTTCEEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH-----HcCCeEEEEE
Confidence 4777777799999999999998877 6788888885
No 294
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.78 E-value=1.2 Score=50.31 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=29.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.|.+-.+|+|||++++-++.... .+|.+|.||=
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a-----~~g~~vl~fS 232 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMS-----DNDDVVNLHS 232 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHH-----HTTCEEEEEC
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHH-----HcCCEEEEEE
Confidence 3666666799999999999998887 6688999985
No 295
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=85.30 E-value=0.31 Score=53.13 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.|+|+|. |++|||+++..|++.|.
T Consensus 42 lIvI~GP-TgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 42 LLVLMGA-TGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEECS-TTSSHHHHHHHHHTTSC
T ss_pred eEEEECC-CCCCHHHHHHHHHHHCC
Confidence 6889999 99999999999988763
No 296
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=84.73 E-value=0.86 Score=44.99 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=30.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.++|+|. +|+|||+++.+++..+. .+|.++.++.
T Consensus 55 ~~~~l~G~-~GtGKT~la~~i~~~~~-----~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGS-FGVGKTYLLAAIANELA-----KRNVSSLIVY 89 (202)
T ss_dssp CEEEEECS-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEE
Confidence 46999997 89999999999999998 7788877754
No 297
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=84.73 E-value=0.83 Score=46.52 Aligned_cols=36 Identities=17% Similarity=0.011 Sum_probs=30.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccc
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ 81 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~ 81 (863)
.+++|+ -++|||+..++++..+. .+|++|..+||.-
T Consensus 31 ~vitG~-MgsGKTT~lL~~a~r~~-----~~g~kVli~k~~~ 66 (214)
T 2j9r_A 31 EVICGS-MFSGKSEELIRRVRRTQ-----FAKQHAIVFKPCI 66 (214)
T ss_dssp EEEECS-TTSCHHHHHHHHHHHHH-----HTTCCEEEEECC-
T ss_pred EEEECC-CCCcHHHHHHHHHHHHH-----HCCCEEEEEEecc
Confidence 455554 59999999999999988 8899999999853
No 298
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=84.69 E-value=0.7 Score=51.27 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=33.2
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCC-CCCCCCceeEEc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSP-TSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~-~~~~g~~v~~~K 78 (863)
.++.|.|++.-.|+|||++|+.|+.+|..+. ..++|++|...-
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD 150 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVID 150 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEE
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEe
Confidence 4678999999999999999999999996100 001588987765
No 299
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=84.26 E-value=0.72 Score=46.04 Aligned_cols=36 Identities=19% Similarity=0.008 Sum_probs=31.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEccc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi 80 (863)
..+++|+ .++|||+..+.++..+. .+|++|..+||.
T Consensus 10 i~v~~G~-mgsGKTT~ll~~a~r~~-----~~g~kV~v~k~~ 45 (191)
T 1xx6_A 10 VEVIVGP-MYSGKSEELIRRIRRAK-----IAKQKIQVFKPE 45 (191)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEEEEC
T ss_pred EEEEECC-CCCcHHHHHHHHHHHHH-----HCCCEEEEEEec
Confidence 4666666 79999999999999988 889999999985
No 300
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=83.97 E-value=0.69 Score=44.94 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=23.2
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.++.|+|+|. +|+|||+++..|++.|.
T Consensus 4 ~~~~i~l~G~-~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 4 NLTNIYLIGL-MGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp -CCEEEEECS-TTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECC-CCCCHHHHHHHHHHHhC
Confidence 3567999999 99999999999998874
No 301
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=83.57 E-value=0.78 Score=46.99 Aligned_cols=37 Identities=22% Similarity=0.075 Sum_probs=31.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ 81 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~ 81 (863)
.++|+|. .|+|||+....++..+. .+|.+|.+++|..
T Consensus 14 i~litG~-mGsGKTT~ll~~~~r~~-----~~g~kVli~~~~~ 50 (223)
T 2b8t_A 14 IEFITGP-MFAGKTAELIRRLHRLE-----YADVKYLVFKPKI 50 (223)
T ss_dssp EEEEECS-TTSCHHHHHHHHHHHHH-----HTTCCEEEEEECC
T ss_pred EEEEECC-CCCcHHHHHHHHHHHHH-----hcCCEEEEEEecc
Confidence 3566665 79999999999999888 7899999999853
No 302
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=83.42 E-value=0.93 Score=44.74 Aligned_cols=36 Identities=22% Similarity=0.146 Sum_probs=31.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEccc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi 80 (863)
.++|+|+ .|+|||+....++..+. .+|.+|.+++|.
T Consensus 5 i~vi~G~-~gsGKTT~ll~~~~~~~-----~~g~~v~~~~~~ 40 (184)
T 2orw_A 5 LTVITGP-MYSGKTTELLSFVEIYK-----LGKKKVAVFKPK 40 (184)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHHH-----HTTCEEEEEEEC
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEeec
Confidence 4778887 79999999999998887 789999999984
No 303
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=82.21 E-value=0.86 Score=43.38 Aligned_cols=26 Identities=19% Similarity=0.064 Sum_probs=21.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
|..|+|+|. +|+||||++..|++.+.
T Consensus 1 M~~i~l~G~-~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 1 MTLIILEGP-DCCFKSTVAAKLSKELK 26 (173)
T ss_dssp -CEEEEECS-SSSSHHHHHHHHHHHHC
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHhC
Confidence 456889998 99999999999998763
No 304
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=81.43 E-value=1.1 Score=43.64 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=28.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.++|+|. .|+|||+++..|+..|. ..|.++.++.
T Consensus 15 ~i~l~G~-~GsGKsT~~~~L~~~l~-----~~~~~~~~~~ 48 (186)
T 2yvu_A 15 VVWLTGL-PGSGKTTIATRLADLLQ-----KEGYRVEVLD 48 (186)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEEcC-CCCCHHHHHHHHHHHHH-----hcCCeEEEee
Confidence 5788888 89999999999999998 6787776664
No 305
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=81.09 E-value=11 Score=41.34 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=29.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.|.|. +|+|||+++..++..+. ..|.+|.|+-
T Consensus 63 i~~I~Gp-pGsGKSTLal~la~~~~-----~~gg~VlyId 96 (356)
T 3hr8_A 63 IVEIFGQ-ESSGKTTLALHAIAEAQ-----KMGGVAAFID 96 (356)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----hcCCeEEEEe
Confidence 4677776 99999999999999988 7788899985
No 306
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=80.57 E-value=10 Score=42.53 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=28.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.+.+-.+|+|||++++-++..... +.|.+|.||=
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~----~~g~~vl~~s 236 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAAL----KEGVGVGIYS 236 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH----TTCCCEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH----hCCCeEEEEE
Confidence 36666666999999999999988761 3588898886
No 307
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=80.51 E-value=1.1 Score=44.12 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=25.8
Q ss_pred CCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 002941 29 QPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (863)
Q Consensus 29 ~~~~~~~~~~~~~i~~t~t~~GKT~v~~~L~~~l 62 (863)
+|...+..|..|+|+|. .|+|||+++..|++.+
T Consensus 7 ~~~~~~~~~~~I~l~G~-~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 7 QPAFSPDQVSVIFVLGG-PGAGKGTQCEKLVKDY 39 (203)
T ss_dssp -CCSCTTTCEEEEEECS-TTSSHHHHHHHHHHHS
T ss_pred CCCCCCCCCcEEEEECC-CCCCHHHHHHHHHHHc
Confidence 34445556677899998 8999999999998875
No 308
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=80.41 E-value=10 Score=43.22 Aligned_cols=35 Identities=9% Similarity=0.006 Sum_probs=28.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCC-CCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-NKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~-g~~v~~~K 78 (863)
.+.+.+-.+|+|||++++-++..+. .+ |.+|.||=
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a-----~~~g~~vl~~s 278 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWG-----TAMGKKVGLAM 278 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHT-----TTSCCCEEEEE
T ss_pred eEEEEeecCCCCchHHHHHHHHHHH-----HhcCCcEEEEe
Confidence 3566666699999999999999887 55 88999885
No 309
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=80.34 E-value=1.1 Score=42.86 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=22.6
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.|+.|+|+|. .|+|||+++..|++.|.
T Consensus 6 ~~~~i~l~G~-~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGF-MGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESC-TTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECC-CCCCHHHHHHHHHHHhC
Confidence 3678999998 89999999999998773
No 310
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=80.23 E-value=1.6 Score=42.20 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=26.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCcee
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFV 75 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~ 75 (863)
..|+|+|. +|+||||++..|.+.|. .+|+++.
T Consensus 4 ~~I~i~G~-~GsGKsT~~~~L~~~l~-----~~g~~~~ 35 (192)
T 1kht_A 4 KVVVVTGV-PGVGSTTSSQLAMDNLR-----KEGVNYK 35 (192)
T ss_dssp CEEEEECC-TTSCHHHHHHHHHHHHH-----TTTCCCE
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHH-----hcCcceE
Confidence 35888898 89999999999999987 6665443
No 311
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=79.71 E-value=2.4 Score=45.43 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=30.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
..+.|+|. +|+||||++.-|+..+. ..|.+|...-
T Consensus 105 ~vi~ivG~-~GsGKTTl~~~LA~~l~-----~~g~kV~lv~ 139 (306)
T 1vma_A 105 FVIMVVGV-NGTGKTTSCGKLAKMFV-----DEGKSVVLAA 139 (306)
T ss_dssp EEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred eEEEEEcC-CCChHHHHHHHHHHHHH-----hcCCEEEEEc
Confidence 46889998 99999999999999998 6788887653
No 312
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=79.65 E-value=1.2 Score=42.21 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=30.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.++|+|. +|+|||++..+++..+. ..|.++.|+.
T Consensus 36 g~~~~l~G~-~G~GKTtL~~~i~~~~~-----~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGE-EGAGKSHLLQAWVAQAL-----EAGKNAAYID 71 (149)
T ss_dssp CSEEEEESS-STTTTCHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHHH-----hcCCcEEEEc
Confidence 346899998 99999999999999998 6688888775
No 313
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=79.15 E-value=1.8 Score=42.87 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=29.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
..|.|+|. .|+||||++..|.+.|. ..|+.+..+.
T Consensus 10 ~~I~l~G~-~GsGKsT~~~~L~~~l~-----~~~~~v~~~~ 44 (215)
T 1nn5_A 10 ALIVLEGV-DRAGKSTQSRKLVEALC-----AAGHRAELLR 44 (215)
T ss_dssp CEEEEEES-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred cEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCcEEEee
Confidence 35888998 89999999999999987 6677775553
No 314
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=79.08 E-value=2 Score=46.83 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=30.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.+.|+|. .|+|||+++..|+..+. ..|.+|..+-
T Consensus 80 ~~I~i~G~-~G~GKSTl~~~L~~~l~-----~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGV-PGVGKSTAIEALGMHLI-----ERGHRVAVLA 114 (355)
T ss_dssp EEEEEECC-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHH-----hCCCceEEEe
Confidence 45889997 99999999999999998 8899987765
No 315
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=78.56 E-value=1.5 Score=42.69 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=27.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|.|+|. .|+||||++..|.+.|. ..|+.|...+
T Consensus 3 I~l~G~-~GsGKsT~~~~L~~~l~-----~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGI-DGSGKSTQIQLLAQYLE-----KRGKKVILKR 35 (197)
T ss_dssp EEEECS-TTSSHHHHHHHHHHHHH-----HCCC-EEEEE
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEee
Confidence 678887 89999999999999998 7788886554
No 316
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=78.35 E-value=1.5 Score=43.30 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=23.5
Q ss_pred CCCCCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 002941 33 LPLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (863)
Q Consensus 33 ~~~~~~~~~i~~t~t~~GKT~v~~~L~~~l 62 (863)
|...|+.|.|+|. +|+||||++..|++.+
T Consensus 14 m~~~~~~I~l~G~-~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 14 VRRFPGSIVVMGV-SGSGKSSVGEAIAEAC 42 (202)
T ss_dssp -CCCSSCEEEECS-TTSCHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 4334567999998 8999999999998876
No 317
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=77.67 E-value=1.4 Score=42.36 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=22.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
|+.++|+|. .|+|||+++..|++.|.
T Consensus 4 m~~i~i~G~-~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 4 AKNIVFIGF-MGSGKSTLARALAKDLD 29 (175)
T ss_dssp -CCEEEECC-TTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcC-CCCCHHHHHHHHHHHcC
Confidence 567999998 99999999999998874
No 318
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=77.36 E-value=1.4 Score=42.31 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=21.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
+.|+|+|. +|+||||++..|.+.|.
T Consensus 4 ~~i~l~G~-~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGG-SSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHSS
T ss_pred eEEEEECC-CCCCHHHHHHHHHHhcC
Confidence 35889998 99999999999999874
No 319
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=76.54 E-value=1.7 Score=49.16 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=32.4
Q ss_pred CCeEEEEeCCC---CCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 37 HPTFQIWSANT---SLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 37 ~~~~~i~~t~t---~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
.+.|+||++.. |-|||+++.+|+.+|. +.|++|...
T Consensus 57 ~K~IlVTS~~PTP~GEGKSTtsinLA~alA-----~~GkkVLLi 95 (557)
T 3pzx_A 57 GKLILVTAITPTPAGEGKTTTSVGLTDALA-----RLGKRVMVC 95 (557)
T ss_dssp CEEEEEEESCCCTTCCCHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred CcEEEEEcCCCCCCCCCchhHHHHHHHHHH-----HcCCeEEEE
Confidence 45799999999 9999999999999999 889998664
No 320
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=76.53 E-value=2 Score=41.45 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=22.9
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
+++.|+|+|. +|+|||+++..|++.+.
T Consensus 10 ~~~~i~i~G~-~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGT-PGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECS-TTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeC-CCCCHHHHHHHHHHHhC
Confidence 3456999998 89999999999998874
No 321
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=76.53 E-value=2 Score=42.91 Aligned_cols=35 Identities=11% Similarity=0.307 Sum_probs=30.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.++|+|. +|+|||+++..+++.+. ..|.++.++.
T Consensus 53 ~~~ll~G~-~G~GKT~la~~l~~~~~-----~~~~~~~~~~ 87 (242)
T 3bos_A 53 QAIYLWGP-VKSGRTHLIHAACARAN-----ELERRSFYIP 87 (242)
T ss_dssp SEEEEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEE
Confidence 46999998 89999999999999998 6677787765
No 322
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=76.28 E-value=1.7 Score=41.43 Aligned_cols=26 Identities=19% Similarity=0.149 Sum_probs=22.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
|+.|+|+|. .|+|||+++..|.+.|.
T Consensus 2 ~~~I~l~G~-~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 2 TEPIFMVGA-RGCGMTTVGRELARALG 27 (173)
T ss_dssp CCCEEEESC-TTSSHHHHHHHHHHHHT
T ss_pred CceEEEECC-CCCCHHHHHHHHHHHhC
Confidence 456999997 89999999999998773
No 323
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=75.66 E-value=2.4 Score=43.57 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=27.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 41 QIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 41 ~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.+-..|||||++++.++..+. ++|++|.+.-
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~-----~~G~~V~v~d 41 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQL-----RQGVRVMAGV 41 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHH-----HCCCCEEEEE
Confidence 44455699999999999999998 8899886543
No 324
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=75.50 E-value=3.2 Score=40.87 Aligned_cols=35 Identities=17% Similarity=-0.003 Sum_probs=28.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
..|.|+|. .|+||||++..|.+.|. ..++.+..++
T Consensus 11 ~~I~l~G~-~GsGKST~~~~L~~~l~-----~~~~~~~~~~ 45 (212)
T 2wwf_A 11 KFIVFEGL-DRSGKSTQSKLLVEYLK-----NNNVEVKHLY 45 (212)
T ss_dssp CEEEEEES-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CEEEEEcC-CCCCHHHHHHHHHHHHH-----HcCCcEEEEe
Confidence 35889998 89999999999999987 6677775544
No 325
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=75.30 E-value=1 Score=44.73 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=28.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.|.|.|. +|+||||++..|++.|. ..|.+|..++
T Consensus 2 ~I~i~G~-~GsGKsTl~~~L~~~l~-----~~g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGV-DGAGKRTLVEKLSGAFR-----AAGRSVATLA 35 (214)
T ss_dssp EEEEEEE-EEEEHHHHHHHHHHHHH-----EEEEEEEEEE
T ss_pred EEEEEcC-CCCCHHHHHHHHHHHHH-----hcCCeEEEEe
Confidence 3678887 89999999999999998 6788887665
No 326
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=75.28 E-value=1.9 Score=43.15 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=30.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+++.++=|+.|.|||+.+.|++-... .+|++|.++.
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~-----g~G~rV~~vQ 63 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAV-----GHGKNVGVVQ 63 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 345666677778999999999998777 8999999994
No 327
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=75.01 E-value=2 Score=44.66 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=27.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCcee
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFV 75 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~ 75 (863)
|+.|+|+|. .|+|||+++..|.+.|. ..|+.+.
T Consensus 4 ~~lIvl~G~-pGSGKSTla~~La~~L~-----~~g~~~i 36 (260)
T 3a4m_A 4 IMLIILTGL-PGVGKSTFSKNLAKILS-----KNNIDVI 36 (260)
T ss_dssp CEEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEE
T ss_pred CEEEEEEcC-CCCCHHHHHHHHHHHHH-----hCCCEEE
Confidence 557999999 99999999999999987 5676654
No 328
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=73.98 E-value=2.2 Score=42.12 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=20.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l 62 (863)
..+.|+|. +|+||||++..|+..+
T Consensus 30 ~~i~l~G~-~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 30 RHVVVMGV-SGSGKTTIAHGVADET 53 (200)
T ss_dssp CEEEEECC-TTSCHHHHHHHHHHHH
T ss_pred cEEEEECC-CCCCHHHHHHHHHHhh
Confidence 46888888 8999999999998876
No 329
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=73.88 E-value=2.1 Score=41.47 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=27.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.|.|+|. .|+||||++..|.+.|. ..|..+....
T Consensus 2 ~I~l~G~-~GsGKsT~~~~L~~~l~-----~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGI-DGSGKTTQAKKLYEYLK-----QKGYFVSLYR 35 (195)
T ss_dssp EEEEECS-TTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 3778888 89999999999999986 5677776543
No 330
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=72.78 E-value=2.1 Score=41.61 Aligned_cols=27 Identities=7% Similarity=0.054 Sum_probs=23.1
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.++.|+|+|. .|+||||++..|++.|.
T Consensus 8 ~~~~I~l~G~-~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGG-PGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEEC-TTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECC-CCCCHHHHHHHHHHHhC
Confidence 4557999998 89999999999998774
No 331
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=72.75 E-value=1.9 Score=42.75 Aligned_cols=37 Identities=24% Similarity=0.179 Sum_probs=23.1
Q ss_pred hccCCCCCCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 002941 22 HHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (863)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~i~~t~t~~GKT~v~~~L~~~l 62 (863)
||+++.-+.+. .+..+.|+|. +|+||||++..|.+.+
T Consensus 9 ~~~~~~~~~~~---~~~~i~i~G~-~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 9 HHSSGLVPRGS---KTFIIGISGV-TNSGKTTLAKNLQKHL 45 (207)
T ss_dssp -----CCCCSC---CCEEEEEEES-TTSSHHHHHHHHHTTS
T ss_pred cccccccccCC---CCeEEEEECC-CCCCHHHHHHHHHHhc
Confidence 34555444442 2345889998 7999999998887754
No 332
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=72.72 E-value=2.8 Score=41.27 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=21.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.|+|+|. .|+|||+++..|++.|.
T Consensus 22 ~I~l~G~-~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 22 RVLLLGP-PGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHHT
T ss_pred EEEEECC-CCCCHHHHHHHHHHHhC
Confidence 5888888 89999999999998774
No 333
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=72.69 E-value=2 Score=44.55 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=22.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
|+.++|+|. +|+|||+++..|++.+.
T Consensus 1 M~li~I~G~-~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 1 MLLHLIYGP-TCSGKTDMAIQIAQETG 26 (253)
T ss_dssp CEEEEEECC-TTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECC-CCcCHHHHHHHHHhcCC
Confidence 456888998 99999999999998764
No 334
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=72.30 E-value=2.9 Score=41.80 Aligned_cols=38 Identities=18% Similarity=0.026 Sum_probs=28.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEccc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi 80 (863)
.+-+||.|+ .++|||+--+-.+.... .+|.+|.++||-
T Consensus 20 g~l~fiyG~-MgsGKTt~Ll~~i~n~~-----~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGP-MFSGKSTELMRRVRRFQ-----IAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEEC-TTSCHHHHHHHHHHHHH-----HTTCCEEEEEET
T ss_pred eEEEEEECC-CCCcHHHHHHHHHHHHH-----HcCCeEEEEccc
Confidence 345888888 99999955444444455 678999999983
No 335
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=72.00 E-value=3 Score=44.08 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=18.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSF 62 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l 62 (863)
|+|+|. +|+||||++..|+..+
T Consensus 36 ivl~G~-sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 36 FLLGGQ-PGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEECC-TTSCTHHHHHHHHHHT
T ss_pred EEEECC-CCCCHHHHHHHHHHHh
Confidence 556665 9999999999998876
No 336
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=71.78 E-value=3 Score=40.55 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=21.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l 62 (863)
++.|+|+|. .|+|||+++..|++.+
T Consensus 10 ~~~I~l~G~-~GsGKSTv~~~La~~l 34 (184)
T 1y63_A 10 GINILITGT-PGTGKTSMAEMIAAEL 34 (184)
T ss_dssp SCEEEEECS-TTSSHHHHHHHHHHHS
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHhc
Confidence 457999998 9999999999998874
No 337
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=71.48 E-value=1.9 Score=44.14 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=24.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCCCC----CCceeEEc
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSA----NKKFVYLK 78 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~----g~~v~~~K 78 (863)
|.|.|. .|+||||++..|.+.|. .. |++|...+
T Consensus 28 I~~eG~-~GsGKsT~~~~l~~~l~-----~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 28 ITFEGI-DGAGKTTHLQWFCDRLQ-----ERLGPAGRHVVVTR 64 (227)
T ss_dssp EEEECC-C---CHHHHHHHHHHHH-----HHHGGGTCCEEEEE
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH-----hhccccceeeeeec
Confidence 556676 89999999999999998 66 88887665
No 338
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=71.37 E-value=3.5 Score=40.46 Aligned_cols=31 Identities=10% Similarity=-0.041 Sum_probs=25.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeE
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVY 76 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~ 76 (863)
.|+|+|. .|+||||++..|++.|. ..| ++..
T Consensus 6 ~I~i~G~-~GsGKsT~~~~L~~~l~-----~~g-~~~~ 36 (213)
T 2plr_A 6 LIAFEGI-DGSGKSSQATLLKDWIE-----LKR-DVYL 36 (213)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHHT-----TTS-CEEE
T ss_pred EEEEEcC-CCCCHHHHHHHHHHHHh-----hcC-CEEE
Confidence 5788888 89999999999999987 556 5543
No 339
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=70.65 E-value=1.9 Score=41.51 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=18.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
+..|+|+|. .|+|||+++..|.+.|.
T Consensus 5 ~~~I~l~G~-~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGP-FGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECC-C----CHHHHHHHHHST
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHhcC
Confidence 456889998 99999999999988764
No 340
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=70.36 E-value=3.3 Score=39.92 Aligned_cols=33 Identities=24% Similarity=0.194 Sum_probs=26.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
.+.|+|. .|+||||++..|...|. ..|+.+..+
T Consensus 7 ~i~l~G~-~GsGKST~~~~L~~~l~-----~~g~~~i~~ 39 (179)
T 2pez_A 7 TVWLTGL-SGAGKTTVSMALEEYLV-----CHGIPCYTL 39 (179)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHh-----hCCCcEEEE
Confidence 4778887 89999999999999886 557666544
No 341
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=70.32 E-value=2.9 Score=40.42 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=21.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
+.|+|+|. .|+|||+++..|++.|.
T Consensus 3 ~~I~l~G~-~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGL-PGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECS-TTSSHHHHHHHHHHHHT
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHcC
Confidence 35899998 99999999999998763
No 342
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=70.07 E-value=3.9 Score=41.29 Aligned_cols=33 Identities=9% Similarity=0.060 Sum_probs=28.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|.|.|. .|+||||++..|.+.|. .+|++|...+
T Consensus 9 i~~eG~-~gsGKsT~~~~l~~~l~-----~~~~~v~~~~ 41 (213)
T 4edh_A 9 VTLEGP-EGAGKSTNRDYLAERLR-----ERGIEVQLTR 41 (213)
T ss_dssp EEEECS-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred EEEEcC-CCCCHHHHHHHHHHHHH-----HcCCCccccc
Confidence 556676 79999999999999999 8899987765
No 343
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=69.65 E-value=3.3 Score=41.39 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=21.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l 62 (863)
..+.|+|. +|+||||++..|++.+
T Consensus 6 ~~i~i~G~-~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGP-SGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHh
Confidence 46899997 9999999999998876
No 344
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=69.36 E-value=2.8 Score=40.45 Aligned_cols=37 Identities=8% Similarity=0.119 Sum_probs=28.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
...++|+|. +|+|||+++.+++..+.. ..|..+.++.
T Consensus 38 g~~~~l~G~-~G~GKTtL~~~i~~~~~~----~~g~~~~~~~ 74 (180)
T 3ec2_A 38 GKGLTFVGS-PGVGKTHLAVATLKAIYE----KKGIRGYFFD 74 (180)
T ss_dssp CCEEEECCS-SSSSHHHHHHHHHHHHHH----HSCCCCCEEE
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHHHH----HcCCeEEEEE
Confidence 346899997 899999999999998851 3576676644
No 345
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=69.17 E-value=3.3 Score=41.93 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=23.7
Q ss_pred CCCCCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 34 PLSHPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 34 ~~~~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
+..|..|+|.|. .|+|||+++..|++.|.
T Consensus 13 ~~~~~~I~l~G~-~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 13 SPKGVRAVLLGP-PGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp -CCCCEEEEECC-TTSSHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECC-CCCCHHHHHHHHHHHhC
Confidence 334567999998 79999999999999874
No 346
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=68.97 E-value=3.9 Score=43.67 Aligned_cols=37 Identities=11% Similarity=0.229 Sum_probs=29.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.++|+|. +|+|||+++.+|+..+.. ++|.+|.++-
T Consensus 152 ~~~lll~G~-~GtGKT~La~aia~~~~~----~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGD-MGIGKSYLLAAMAHELSE----KKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECS-TTSSHHHHHHHHHHHHHH----HSCCCEEEEE
T ss_pred CceEEEECC-CCCCHHHHHHHHHHHHHH----hcCCcEEEEE
Confidence 356999998 999999999999998751 2467777664
No 347
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=68.70 E-value=4.2 Score=38.54 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=22.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.+.++|+|. +|+|||+++..+++.+.
T Consensus 43 ~~~~ll~G~-~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 43 KNNPVLIGE-PGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SCEEEEECC-TTSCHHHHHHHHHHHHH
T ss_pred CCceEEECC-CCCCHHHHHHHHHHHHH
Confidence 345899998 89999999999999986
No 348
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=68.62 E-value=1.9 Score=45.81 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
...|-|+| .+|+|||||+..|.+.|. ..|.++.++
T Consensus 5 ~~iIgItG-~sGSGKSTva~~L~~~lg-----~~~~~~~vI 39 (290)
T 1a7j_A 5 HPIISVTG-SSGAGTSTVKHTFDQIFR-----REGVKAVSI 39 (290)
T ss_dssp SCEEEEES-CC---CCTHHHHHHHHHH-----HHTCCEEEE
T ss_pred ceEEEEEC-CCCCCHHHHHHHHHHHHh-----hcCCCeeEe
Confidence 34588888 599999999999999886 555555443
No 349
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=68.50 E-value=3.2 Score=40.90 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=26.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
..+.|+|. +|+||||++..|+..|. ..|..+.++
T Consensus 26 ~~i~l~G~-sGsGKSTl~~~La~~l~-----~~G~~~~~~ 59 (200)
T 3uie_A 26 CVIWVTGL-SGSGKSTLACALNQMLY-----QKGKLCYIL 59 (200)
T ss_dssp EEEEEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHH-----hcCceEEEe
Confidence 35888888 89999999999999987 556543343
No 350
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=68.24 E-value=1.5 Score=44.20 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=20.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHH
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSS 61 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~ 61 (863)
.+.++|+|. |++|||+++..|++.
T Consensus 34 g~~ilI~Gp-sGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGD-SGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECC-CTTTTHHHHHHHHTT
T ss_pred CEEEEEECC-CCCCHHHHHHHHHHh
Confidence 456889996 999999999988754
No 351
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=68.18 E-value=3.8 Score=43.64 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=29.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.++|+|. +|+|||+++.+++..+. ..+.++.++.
T Consensus 38 ~~lll~G~-~GtGKT~la~~i~~~~~-----~~~~~~~~i~ 72 (324)
T 1l8q_A 38 NPIFIYGS-VGTGKTHLLQAAGNEAK-----KRGYRVIYSS 72 (324)
T ss_dssp SSEEEECS-SSSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CeEEEECC-CCCcHHHHHHHHHHHHH-----HCCCEEEEEE
Confidence 45999998 89999999999999987 5577777765
No 352
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=67.63 E-value=4.3 Score=38.51 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.+.++|+|. +|+|||+++..+++.+.
T Consensus 43 ~~~vll~G~-~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGD-PGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESC-GGGCHHHHHHHHHHHHH
T ss_pred CCceEEECC-CCCCHHHHHHHHHHHHH
Confidence 345889998 89999999999999986
No 353
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=67.20 E-value=3 Score=45.05 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.|+|+|. ||+|||+++..|++.+.
T Consensus 7 ~i~i~Gp-tGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 7 AIFLMGP-TAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHHSC
T ss_pred EEEEECC-CCCCHHHHHHHHHHHcC
Confidence 6888888 99999999999998763
No 354
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=66.97 E-value=3.5 Score=41.02 Aligned_cols=27 Identities=11% Similarity=0.031 Sum_probs=22.0
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
....|.|+|. +|+|||+++..|+..+.
T Consensus 7 ~g~~i~l~Gp-sGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGP-SGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECC-TTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECc-CCCCHHHHHHHHHhhCC
Confidence 3456888888 99999999999988763
No 355
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=66.68 E-value=4.1 Score=40.78 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=20.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
-+.+.|+|. +|+|||++...|++.+.
T Consensus 19 g~~ivl~GP-SGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGA-SGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECC-TTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECc-CCCCHHHHHHHHHhhCC
Confidence 345777777 99999999999988653
No 356
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=66.59 E-value=3.8 Score=40.28 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=20.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHH
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSS 60 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~ 60 (863)
|..|.|+|. .|+||||++..|+.
T Consensus 1 m~~i~i~G~-~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 1 MKRIGLTGN-IGCGKSTVAQMFRE 23 (204)
T ss_dssp CCEEEEEEC-TTSSHHHHHHHHHH
T ss_pred CeEEEEECC-CCcCHHHHHHHHHH
Confidence 456899998 89999999998887
No 357
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=66.00 E-value=4.7 Score=41.44 Aligned_cols=34 Identities=9% Similarity=0.025 Sum_probs=28.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCc-eeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKK-FVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~-v~~~K 78 (863)
-|.|.|. .|+|||+++..|.+.|. ..|++ +...+
T Consensus 29 ~i~~eG~-~GsGKsT~~~~l~~~l~-----~~~~~~~~~~r 63 (236)
T 3lv8_A 29 FIVIEGL-EGAGKSTAIQVVVETLQ-----QNGIDHITRTR 63 (236)
T ss_dssp EEEEEES-TTSCHHHHHHHHHHHHH-----HTTCCCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----hcCCCeeeeec
Confidence 4667777 78999999999999998 78888 66555
No 358
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=65.75 E-value=4 Score=38.76 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=21.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
..+.|+|. +|+||||++..|+..+.
T Consensus 5 ~~i~l~G~-~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGP-MGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECC-TTSCHHHHHHHHHHHTT
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHhC
Confidence 46899998 89999999999988764
No 359
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=65.72 E-value=3.6 Score=44.40 Aligned_cols=48 Identities=15% Similarity=0.181 Sum_probs=34.3
Q ss_pred CChhhHHHHHHHHhhccCCCCCCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHhcc
Q 002941 8 HYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLL 64 (863)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~t~~GKT~v~~~L~~~l~~ 64 (863)
|+.++..++...+....... ..+.++|+|. +|+|||+++..+++.|..
T Consensus 24 ~Re~E~~~i~~~L~~~i~~~--------~~~~lli~Gp-PGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 24 SQVEDFTRIFLPIYDSLMSS--------QNKLFYITNA-DDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--------CCCEEEEECC-CSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCC--------CCCeEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 44555555655555544331 2346999999 999999999999999973
No 360
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=65.24 E-value=4.4 Score=39.18 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.|+|+|. .|+||||++..|.+.|.
T Consensus 7 ~I~l~G~-~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 7 LIIVTGH-PATGKTTLSQALATGLR 30 (193)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHHT
T ss_pred EEEEECC-CCCCHHHHHHHHHHHcC
Confidence 5888898 89999999999998763
No 361
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=64.80 E-value=5 Score=40.85 Aligned_cols=36 Identities=22% Similarity=0.042 Sum_probs=28.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccc
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ 81 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~ 81 (863)
.+|+|+ -++|||+..+.++..+. .+|.+|..+||..
T Consensus 31 ~vitG~-M~sGKTT~Llr~~~r~~-----~~g~kvli~kp~~ 66 (219)
T 3e2i_A 31 ECITGS-MFSGKSEELIRRLRRGI-----YAKQKVVVFKPAI 66 (219)
T ss_dssp EEEEEC-TTSCHHHHHHHHHHHHH-----HTTCCEEEEEEC-
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH-----HcCCceEEEEecc
Confidence 566665 69999997777777777 7899999999843
No 362
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=64.50 E-value=32 Score=37.10 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=27.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCC--CCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA--NKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~--g~~v~~~K 78 (863)
.+.|.|. +|+|||++++-++..+. ++ |.+|.|+-
T Consensus 30 iteI~G~-pGsGKTtL~Lq~~~~~~-----~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGP-SKSFKSNFGLTMVSSYM-----RQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEES-SSSSHHHHHHHHHHHHH-----HHCTTCEEEEEE
T ss_pred eEEEECC-CCCCHHHHHHHHHHHHH-----hcCCCceEEEEe
Confidence 3677786 99999999999988876 54 78898876
No 363
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=64.37 E-value=4.8 Score=39.08 Aligned_cols=25 Identities=16% Similarity=0.104 Sum_probs=21.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
..|.|+|. .|+|||+++..|++.|.
T Consensus 13 ~~I~l~G~-~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGG-PGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEEC-TTSSHHHHHHHHHHHHT
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHhC
Confidence 35888998 99999999999998773
No 364
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=63.82 E-value=6.2 Score=40.54 Aligned_cols=37 Identities=19% Similarity=0.055 Sum_probs=30.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ 81 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~ 81 (863)
-.+++|+ -++|||+-.++++.... .+|++|..+||.-
T Consensus 21 l~v~~G~-MgsGKTT~lL~~~~r~~-----~~g~kvli~kp~~ 57 (234)
T 2orv_A 21 IQVILGP-MFSGKSTELMRRVRRFQ-----IAQYKCLVIKYAK 57 (234)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHHHH-----TTTCCEEEEEETT
T ss_pred EEEEECC-CCCcHHHHHHHHHHHHH-----HCCCeEEEEeecC
Confidence 3555554 49999999999998888 8999999999864
No 365
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=63.78 E-value=5.3 Score=38.38 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=21.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
+.|.|+|. .|+|||+++..|++.|.
T Consensus 7 ~~I~l~G~-~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGG-PGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEES-TTSSHHHHHHHHHHHHC
T ss_pred cEEEEECC-CCCCHHHHHHHHHHHhC
Confidence 35888888 89999999999988763
No 366
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=63.59 E-value=4.8 Score=40.23 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=22.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
|..|+|.|. .|+||||++..|++.|.
T Consensus 5 ~~~I~l~G~-~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGA-PASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEES-TTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHhC
Confidence 346899998 89999999999999874
No 367
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=63.39 E-value=4.2 Score=41.55 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=19.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l 62 (863)
.+-|+|. .|+||||++..|+..+
T Consensus 27 iigI~G~-~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 27 LIGVSGG-TASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh
Confidence 4778887 8999999999988866
No 368
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=63.23 E-value=4.5 Score=37.95 Aligned_cols=19 Identities=21% Similarity=0.123 Sum_probs=17.1
Q ss_pred eEEEEeCCCCCcHHHHHHHH
Q 002941 39 TFQIWSANTSLGKTLVSAGL 58 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L 58 (863)
.|+|+|. +|+||||++..|
T Consensus 3 ~I~l~G~-~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGM-PGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECC-TTSCHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHH
Confidence 4788888 999999999998
No 369
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=63.15 E-value=4.8 Score=39.17 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.|.|.|. .|+||||++..|++.|.
T Consensus 2 ~I~i~G~-~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGT-VGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHHHC
T ss_pred EEEEECC-CccCHHHHHHHHHHhcC
Confidence 4788898 89999999999999885
No 370
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=62.96 E-value=45 Score=44.46 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=30.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.+.+-..|+|||++++.++..+. ..|.+|.|+.
T Consensus 733 ~lilIaG~PG~GKTtLalqlA~~~a-----~~g~~VlyiS 767 (2050)
T 3cmu_A 733 RIVEIYGPESSGKTTLTLQVIAAAQ-----REGKTCAFID 767 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCcEEEEE
Confidence 4677777899999999999999988 7788999998
No 371
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=62.88 E-value=5.7 Score=39.18 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=26.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
.+.|+|. +|+||||++..|+..+. ..|..|...
T Consensus 24 ~i~i~G~-~GsGKstl~~~l~~~~~-----~~~~~v~~~ 56 (201)
T 1rz3_A 24 VLGIDGL-SRSGKTTLANQLSQTLR-----EQGISVCVF 56 (201)
T ss_dssp EEEEEEC-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHh-----hcCCeEEEe
Confidence 4788887 99999999999999987 556666554
No 372
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=62.60 E-value=4.9 Score=41.34 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=20.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.++|+|. +|+|||+++..|++.+.
T Consensus 34 ~i~l~G~-~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 34 AILLGGQ-SGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEESC-GGGTTHHHHHHHHHHTT
T ss_pred EEEEECC-CCCCHHHHHHHHHHhcC
Confidence 4778887 99999999999998763
No 373
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=62.48 E-value=5.7 Score=39.43 Aligned_cols=31 Identities=16% Similarity=0.103 Sum_probs=27.2
Q ss_pred EEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 42 IWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 42 i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|=|. -|+||||.+..|.+.|. ++|++|...+
T Consensus 5 ~EG~-DGsGKsTq~~~L~~~L~-----~~g~~v~~tr 35 (197)
T 3hjn_A 5 FEGI-DGSGKSTQIQLLAQYLE-----KRGKKVILKR 35 (197)
T ss_dssp EECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EECC-CCCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 4476 68999999999999999 8999998877
No 374
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=62.45 E-value=4.6 Score=39.35 Aligned_cols=23 Identities=30% Similarity=0.183 Sum_probs=19.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHH
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSS 60 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~ 60 (863)
+..|.|+|. +|+|||+++..|++
T Consensus 8 ~~~I~i~G~-~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGN-IGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEEC-TTSCHHHHHHHHHH
T ss_pred ceEEEEECC-CCCCHHHHHHHHHH
Confidence 446889998 99999999988765
No 375
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=62.42 E-value=4.9 Score=37.97 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=20.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.|.|+|. .|+|||+++..|.+.|.
T Consensus 2 ~I~l~G~-~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGF-MCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESC-TTSCHHHHHHHHHHHHT
T ss_pred eEEEECC-CCCCHHHHHHHHHHHhC
Confidence 4788998 89999999999998763
No 376
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=62.11 E-value=4.4 Score=41.37 Aligned_cols=34 Identities=18% Similarity=0.015 Sum_probs=28.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCC-CCCceeE-Ec
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSS-ANKKFVY-LK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~-~g~~v~~-~K 78 (863)
-|.|.|. .|+|||+++..|.+.|. . +|++|.. .+
T Consensus 23 ~i~~~G~-~g~GKst~~~~l~~~l~-----~~~g~~v~~~tr 58 (223)
T 3ld9_A 23 FITFEGI-DGSGKTTQSHLLAEYLS-----EIYGVNNVVLTR 58 (223)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH-----HHHCGGGEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHh-----hccCceeeEeee
Confidence 3566677 79999999999999998 7 8888887 44
No 377
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=61.50 E-value=5.3 Score=40.13 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=22.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
|..|+|.|. +|+|||+++..|++.|.
T Consensus 7 ~~~I~l~G~-~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGA-PGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEEC-TTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHcC
Confidence 456899998 99999999999998763
No 378
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=61.45 E-value=6.6 Score=39.39 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=27.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.|+|. +|+|||+++.-++..+. ..|.+|.|+-
T Consensus 25 ~~~i~G~-~GsGKTtl~~~~~~~~~-----~~~~~v~~~~ 58 (247)
T 2dr3_A 25 VVLLSGG-PGTGKTIFSQQFLWNGL-----KMGEPGIYVA 58 (247)
T ss_dssp EEEEEEC-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----hcCCeEEEEE
Confidence 4566666 99999999998888877 6788898885
No 379
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=61.35 E-value=6.3 Score=39.76 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=27.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCC-ceeEEc
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANK-KFVYLK 78 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~-~v~~~K 78 (863)
|.|.|. .|+||||++..|.+.|. .+|+ .|...+
T Consensus 6 i~~eG~-~gsGKsT~~~~l~~~l~-----~~~~~~v~~~r 39 (213)
T 4tmk_A 6 IVIEGL-EGAGKTTARNVVVETLE-----QLGIRDMVFTR 39 (213)
T ss_dssp EEEEEC-TTSCHHHHHHHHHHHHH-----HTTCCCEEEEE
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH-----HcCCCcceeee
Confidence 556677 79999999999999998 7887 665555
No 380
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=61.22 E-value=5.1 Score=43.56 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=21.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.|.|+|. |+||||+++..|++.|.
T Consensus 9 lI~I~Gp-tgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGP-TASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHTT
T ss_pred eEEEECC-CcCcHHHHHHHHHHHcC
Confidence 5788887 99999999999999873
No 381
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=61.17 E-value=4.2 Score=43.80 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=20.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
+.|+|+|+ |+||||+++..|++.+.
T Consensus 4 ~~i~i~Gp-tgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGP-TAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECC-TTSCHHHHHHHHHHTTT
T ss_pred cEEEEECC-CcCCHHHHHHHHHHhCc
Confidence 35778887 99999999999998763
No 382
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=60.05 E-value=5.6 Score=38.71 Aligned_cols=24 Identities=17% Similarity=0.265 Sum_probs=21.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.++|+|. +|+|||+++..+++.+.
T Consensus 40 ~~ll~G~-~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGP-PGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECS-TTSSHHHHHHHHHHHHH
T ss_pred eEEEECC-CCCCHHHHHHHHHHHHh
Confidence 4899998 89999999999999886
No 383
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=59.80 E-value=6.1 Score=45.08 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=30.4
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
..+.|-||||+ |||+++..|...|+ ..|++|+.+-
T Consensus 63 ~~~vI~VtGTN---GKtST~~~l~~iL~-----~~G~~vG~~t 97 (487)
T 2vos_A 63 SYPSIHIAGTN---GKTSVARMVDALVT-----ALHRRTGRTT 97 (487)
T ss_dssp SSCEEEEECSS---SHHHHHHHHHHHHH-----HTTCCEEEEC
T ss_pred cCeEEEEeCCC---CcHHHHHHHHHHHH-----HcCCCeEEEC
Confidence 35679999995 99999999999999 8899998664
No 384
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=59.80 E-value=8.1 Score=38.16 Aligned_cols=35 Identities=17% Similarity=0.074 Sum_probs=27.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
++.+.|+| .+|||||++...|+..+. .. .++....
T Consensus 30 ~~~i~i~G-~~g~GKTTl~~~l~~~~~-----~~-~~~~~i~ 64 (221)
T 2wsm_A 30 TVAVNIMG-AIGSGKTLLIERTIERIG-----NE-VKIGAML 64 (221)
T ss_dssp CEEEEEEE-CTTSCHHHHHHHHHHHHT-----TT-SCEEEEE
T ss_pred ceEEEEEc-CCCCCHHHHHHHHHHHhc-----cC-CeEEEEe
Confidence 45688999 589999999999999875 44 6676665
No 385
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=59.57 E-value=4 Score=39.19 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHH
Q 002941 39 TFQIWSANTSLGKTLVSAGLSS 60 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~ 60 (863)
.|.|.|. ++||||++...|+.
T Consensus 23 ki~vvG~-~~~GKSsli~~l~~ 43 (190)
T 3con_A 23 KLVVVGA-GGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEECS-TTSSHHHHHHHHHH
T ss_pred EEEEECc-CCCCHHHHHHHHHc
Confidence 5888897 99999999877764
No 386
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=59.57 E-value=7.5 Score=36.13 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=24.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCcee
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFV 75 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~ 75 (863)
.++|+|. +|+|||+++.+|..... +.+..+.
T Consensus 26 ~vll~G~-~GtGKt~lA~~i~~~~~-----~~~~~~v 56 (145)
T 3n70_A 26 AVWLYGA-PGTGRMTGARYLHQFGR-----NAQGEFV 56 (145)
T ss_dssp CEEEESS-TTSSHHHHHHHHHHSST-----TTTSCCE
T ss_pred CEEEECC-CCCCHHHHHHHHHHhCC-----ccCCCEE
Confidence 3889998 89999999999988765 5555554
No 387
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=59.25 E-value=5.7 Score=38.24 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=20.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.|+|+|. .|+||||++..|++.+.
T Consensus 5 ~I~l~G~-~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 5 VVFVLGG-PGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHHC
T ss_pred EEEEECC-CCCCHHHHHHHHHHHhC
Confidence 4788887 99999999999988763
No 388
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=59.16 E-value=6.4 Score=38.45 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l 62 (863)
.|.|+|. .|+|||+++..|+..|
T Consensus 4 ~i~i~G~-~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGP-SASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHhc
Confidence 6888887 8999999999998876
No 389
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=58.93 E-value=7.5 Score=39.92 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=27.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.++|+|. +|+|||+++.+|...+. +.+..+.++.
T Consensus 31 ~vll~G~-~GtGKt~la~~i~~~~~-----~~~~~~~~v~ 64 (265)
T 2bjv_A 31 PVLIIGE-RGTGKELIASRLHYLSS-----RWQGPFISLN 64 (265)
T ss_dssp CEEEECC-TTSCHHHHHHHHHHTST-----TTTSCEEEEE
T ss_pred CEEEECC-CCCcHHHHHHHHHHhcC-----ccCCCeEEEe
Confidence 4889997 99999999999998876 5555565544
No 390
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=58.71 E-value=5.9 Score=38.06 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=20.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.|+|+|. .|+||||++..|++.+.
T Consensus 6 ~I~l~G~-~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 6 AVIFLGP-PGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHHHT
T ss_pred EEEEECC-CCCCHHHHHHHHHHHhC
Confidence 4888887 89999999999998763
No 391
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=58.64 E-value=6.7 Score=38.69 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
+.|+|+|. +|||||+++..|++.+.
T Consensus 13 ~~i~l~G~-sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGP-SGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECC-TTSCHHHHHHHHHHHCT
T ss_pred CEEEEECC-CCCCHHHHHHHHHHhCc
Confidence 34888888 89999999999988763
No 392
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=58.49 E-value=9.3 Score=39.99 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=23.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
...++|+|. +|+|||+++.++++.+.
T Consensus 67 ~~~vll~G~-~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 67 TLHMSFTGN-PGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCEEEEEEC-TTSSHHHHHHHHHHHHH
T ss_pred CceEEEECC-CCCCHHHHHHHHHHHHH
Confidence 346999997 99999999999999987
No 393
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=58.29 E-value=5.6 Score=44.28 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
+.|+|+|+ |++|||+++..|++.+.
T Consensus 3 ~~i~i~Gp-tgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGT-TGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEEC-SSSSHHHHHHHHHHHHT
T ss_pred cEEEEECc-chhhHHHHHHHHHHHCC
Confidence 35788887 99999999999999874
No 394
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=58.11 E-value=7.3 Score=37.10 Aligned_cols=25 Identities=16% Similarity=0.399 Sum_probs=21.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l 62 (863)
+..+.|+|. +|+|||+++..|+..+
T Consensus 8 g~~i~l~G~-~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGV-SGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECS-TTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcC-CCCCHHHHHHHHHHhh
Confidence 446889998 8999999999988765
No 395
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=57.84 E-value=6.9 Score=39.83 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=23.0
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.+..+.|.|. .|+||||++..|++.+.
T Consensus 26 ~~~~i~l~G~-~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGP-PGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECC-TTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECC-CCCCHHHHHHHHHHHhC
Confidence 3457999998 89999999999998774
No 396
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=57.64 E-value=5.9 Score=40.61 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=21.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
..|.|+|. +|+||||++..|.+.|.
T Consensus 23 ~iI~I~G~-~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGG-TASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECS-TTSSHHHHHHHHHHHTT
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHhh
Confidence 35888887 99999999999988764
No 397
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=57.61 E-value=7.2 Score=38.90 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=21.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
..|+|.|. .|+||||++..|++.|.
T Consensus 6 ~~I~l~G~-~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGA-PGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEEC-TTSSHHHHHHHHHHHHC
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHhC
Confidence 45889998 79999999999999873
No 398
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=57.45 E-value=7.5 Score=42.49 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=29.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.|+| .+|+|||++++.|+..+. ++|.+|.|+-
T Consensus 65 ii~I~G-~pGsGKTtLal~la~~~~-----~~g~~vlyid 98 (356)
T 1u94_A 65 IVEIYG-PESSGKTTLTLQVIAAAQ-----REGKTCAFID 98 (356)
T ss_dssp EEEEEC-STTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEEC-CCCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 466666 699999999999999887 7788999987
No 399
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=57.22 E-value=7.1 Score=38.90 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=21.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
..|+|.|. .|+||||++..|++.|.
T Consensus 5 ~~I~l~G~-~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGP-PGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHHC
T ss_pred cEEEEECC-CCCCHHHHHHHHHHHcC
Confidence 45888998 79999999999999874
No 400
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=57.21 E-value=7.4 Score=37.61 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=20.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
+.+.|+|. +|+||||+...|+..+.
T Consensus 6 ~~i~i~Gp-sGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGA-HGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHCT
T ss_pred CEEEEECC-CCCCHHHHHHHHHhhCC
Confidence 45788887 89999999999988753
No 401
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=56.85 E-value=6.5 Score=38.90 Aligned_cols=24 Identities=8% Similarity=0.140 Sum_probs=20.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.|+|+|. .|+||||++..|++.+.
T Consensus 2 ~I~l~G~-~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGL-PGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHC
T ss_pred EEEEECC-CCCCHHHHHHHHHHHhC
Confidence 3788887 89999999999988764
No 402
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=56.70 E-value=9.1 Score=40.00 Aligned_cols=39 Identities=13% Similarity=0.190 Sum_probs=35.3
Q ss_pred CCCeEEEEe-CCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcc
Q 002941 36 SHPTFQIWS-ANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (863)
Q Consensus 36 ~~~~~~i~~-t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (863)
+|+-||||| .-++.||=.+++.|.+.|+ ++|++|...|-
T Consensus 22 ~~KyIfVTGGVvS~lGKGi~aaSlg~lLk-----~~G~~Vt~~K~ 61 (295)
T 2vo1_A 22 SMKYILVTGGVISGIGKGIIASSVGTILK-----SCGLHVTSIKI 61 (295)
T ss_dssp CCEEEEEEECSSSSSSHHHHHHHHHHHHH-----HTTCCEEEEEE
T ss_pred cceEEEEcCCcccccccHHHHHHHHHHHH-----HCCCcceeeec
Confidence 688899986 6789999999999999999 99999999983
No 403
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=56.50 E-value=10 Score=40.91 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=28.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCC-CCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-NKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~-g~~v~~~K 78 (863)
+.++|+|. +|+|||++...+++.+. .. +..+.++.
T Consensus 45 ~~~li~G~-~G~GKTtl~~~l~~~~~-----~~~~~~~~~i~ 80 (389)
T 1fnn_A 45 PRATLLGR-PGTGKTVTLRKLWELYK-----DKTTARFVYIN 80 (389)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHHT-----TSCCCEEEEEE
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHh-----hhcCeeEEEEe
Confidence 46999998 89999999999999987 44 55666554
No 404
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=56.33 E-value=8.1 Score=40.11 Aligned_cols=38 Identities=13% Similarity=0.226 Sum_probs=34.3
Q ss_pred CCCeEEEEeCC-CCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 36 SHPTFQIWSAN-TSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~-t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+|+-|||||== ++.||-.+++.|.+.|+ .+|++|...|
T Consensus 22 ~mKyIfVTGGVvSglGKGi~aaSlG~LLk-----~rG~~Vt~~K 60 (294)
T 2c5m_A 22 SMKYILVTGGVISGIGKGIIASSVGTILK-----SCGLHVTSIK 60 (294)
T ss_dssp CCEEEEEEECSSTTSCHHHHHHHHHHHHH-----TTTCCEECCE
T ss_pred ceEEEEEcCccccccchHHHHHHHHHHHH-----HCCCeeEEEe
Confidence 57889998754 99999999999999999 9999998888
No 405
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=55.92 E-value=7.4 Score=38.48 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=27.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.|.|. +|+|||++...|+..+. ..+.+|.|+-
T Consensus 25 ~~~i~G~-~GsGKTtl~~~l~~~~~-----~~~~~v~~~~ 58 (235)
T 2w0m_A 25 FIALTGE-PGTGKTIFSLHFIAKGL-----RDGDPCIYVT 58 (235)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH-----HHTCCEEEEE
T ss_pred EEEEEcC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 4677777 89999999999998876 5566787764
No 406
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=55.69 E-value=10 Score=40.39 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=28.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
...+.|.|. +|+||||+...|+..+. ..+.+|.+.
T Consensus 102 g~vi~lvG~-nGsGKTTll~~Lagll~-----~~~g~V~l~ 136 (304)
T 1rj9_A 102 GRVVLVVGV-NGVGKTTTIAKLGRYYQ-----NLGKKVMFC 136 (304)
T ss_dssp SSEEEEECS-TTSSHHHHHHHHHHHHH-----TTTCCEEEE
T ss_pred CeEEEEECC-CCCcHHHHHHHHHHHHH-----hcCCEEEEE
Confidence 346889998 79999999999999998 556677553
No 407
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=55.50 E-value=7.8 Score=42.06 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=30.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.|.+-.+|+|||++++-++..+. ..|.+|.||-
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a-----~~g~~Vl~fS 81 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSAL-----NDDRGVAVFS 81 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH-----HTTCEEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 3777777799999999999999887 6799999986
No 408
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=55.11 E-value=7.8 Score=37.74 Aligned_cols=24 Identities=17% Similarity=0.093 Sum_probs=20.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l 62 (863)
..|.|+|. .|+||||++..|.+.|
T Consensus 5 ~~I~l~G~-~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGL-DKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHTS
T ss_pred cEEEEEcC-CCCCHHHHHHHHHHHH
Confidence 35888887 8999999999998876
No 409
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=54.85 E-value=6.9 Score=38.75 Aligned_cols=23 Identities=9% Similarity=0.131 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
|+|+|. .|+||||++..|++.+.
T Consensus 3 I~l~G~-~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 3 LVLMGL-PGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEECS-TTSSHHHHHHHHHHHSS
T ss_pred EEEECC-CCCCHHHHHHHHHHHhC
Confidence 788888 89999999999988753
No 410
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=54.17 E-value=11 Score=41.43 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=31.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (863)
-+.++|.|+ ||+|||++...|+..+. ..|.++..+-|
T Consensus 35 ~~~~~i~G~-~G~GKs~~~~~~~~~~~-----~~~~~~~~~D~ 71 (392)
T 4ag6_A 35 NSNWTILAK-PGAGKSFTAKMLLLREY-----MQGSRVIIIDP 71 (392)
T ss_dssp CCCEEEECC-TTSSHHHHHHHHHHHHH-----TTTCCEEEEES
T ss_pred cCceEEEcC-CCCCHHHHHHHHHHHHH-----HCCCEEEEEeC
Confidence 346889998 99999999999998887 77888888875
No 411
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=54.01 E-value=8.9 Score=38.85 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=22.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.+.|+|.|. .|+||||.+.-|++.+.
T Consensus 29 ~kiI~llGp-PGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 29 AKVIFVLGG-PGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CEEEEEECC-TTCCHHHHHHHHHHHHC
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHC
Confidence 456888997 89999999999998874
No 412
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=53.92 E-value=9.6 Score=39.15 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=22.8
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.+..+.|+|. +|+||||++..|++.|.
T Consensus 26 ~g~~I~I~G~-~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGP-SGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECC-TTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECC-CCCCHHHHHHHHHHhcC
Confidence 3457899997 89999999999998764
No 413
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=53.86 E-value=8.6 Score=39.42 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
+..+.|+|. +|+|||+++..|++.|.
T Consensus 9 ~~~i~i~G~-~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGP-AGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECC-TTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHhC
Confidence 346888888 89999999999998874
No 414
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=53.37 E-value=15 Score=42.67 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=30.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (863)
+.++|+|. .|+|||++...|++.+. +.|.+|...-|
T Consensus 205 ~~~~I~G~-pGTGKTt~i~~l~~~l~-----~~g~~Vl~~Ap 240 (574)
T 3e1s_A 205 RLVVLTGG-PGTGKSTTTKAVADLAE-----SLGLEVGLCAP 240 (574)
T ss_dssp SEEEEECC-TTSCHHHHHHHHHHHHH-----HTTCCEEEEES
T ss_pred CEEEEEcC-CCCCHHHHHHHHHHHHH-----hcCCeEEEecC
Confidence 45667775 99999999999999998 88988888766
No 415
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=52.83 E-value=9.3 Score=37.80 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=25.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+-|+|. +|+||||++..|+..+. ..|.+++++.
T Consensus 24 ~v~I~G~-sGsGKSTl~~~l~~~~~-----~~g~~~g~v~ 57 (208)
T 3c8u_A 24 LVALSGA-PGSGKSTLSNPLAAALS-----AQGLPAEVVP 57 (208)
T ss_dssp EEEEECC-TTSCTHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHh-----hcCCceEEEe
Confidence 4778887 89999999999999987 3354454443
No 416
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=52.78 E-value=9.4 Score=42.45 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=30.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.|-|||| -|||+++..|...|+ ..|++|+.+.
T Consensus 49 ~~vI~VTGT---nGKtTT~~~l~~iL~-----~~G~~~g~~~ 82 (422)
T 1w78_A 49 PFVFTVAGT---NGKGTTCRTLESILM-----AAGYKVGVYS 82 (422)
T ss_dssp SEEEEEECS---SCHHHHHHHHHHHHH-----HTTCCEEEEC
T ss_pred CcEEEEeCC---cChHHHHHHHHHHHH-----HCCCCEEEEC
Confidence 467899999 599999999999999 8899998876
No 417
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=52.14 E-value=14 Score=36.48 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
+.+.|+|. +|||||++...|+..+.
T Consensus 39 ~~i~ivG~-~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGA-IGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEES-TTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcC-CCCCHHHHHHHHHHHhc
Confidence 45888898 99999999999998875
No 418
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=51.85 E-value=5.8 Score=41.04 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=26.5
Q ss_pred CChhhHHHHH----HHHhhccCCCCCCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 8 HYPDHHRRIL----LRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 8 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
|.|.||+..- ++++.. ...|..+.+.++|||.+++.|+ ++++.|. ++|.+|...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~------~~~m~l~~k~vlITGas~gIG~-----~la~~l~-----~~G~~V~~~ 59 (271)
T 4iin_A 2 HHHHHHSSGVDLGTENLYFQ------SNAMQFTGKNVLITGASKGIGA-----EIAKTLA-----SMGLKVWIN 59 (271)
T ss_dssp ----------------------------CCCCSCCEEEETTCSSHHHH-----HHHHHHH-----HTTCEEEEE
T ss_pred CcccccccccccCcceehhh------hhhcccCCCEEEEECCCcHHHH-----HHHHHHH-----HCCCEEEEE
Confidence 5566776643 333332 2234456788999999999887 4555666 678887653
No 419
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=51.60 E-value=19 Score=37.84 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=22.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.+++++|. +|+|||+++.+|++.+.
T Consensus 37 ~~lLl~Gp-pGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 37 LILGIWGG-KGQGKSFQCELVFRKMG 61 (293)
T ss_dssp SEEEEEEC-TTSCHHHHHHHHHHHHT
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHhC
Confidence 46899998 99999999999999873
No 420
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=51.54 E-value=16 Score=37.15 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=25.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.+..--.|||||+++..|+..|. +|++|...-
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~------~g~~v~vvd 48 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLE------DNYKVAYVN 48 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT------TTSCEEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH------CCCeEEEEe
Confidence 444455699999999999999884 477776553
No 421
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=51.49 E-value=9.7 Score=37.74 Aligned_cols=23 Identities=13% Similarity=0.149 Sum_probs=20.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l 62 (863)
.|+|+|. .|+||||++..|++.+
T Consensus 2 ~I~l~G~-~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGA-PVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh
Confidence 3788998 7999999999999876
No 422
>3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A* 3o03_A*
Probab=51.47 E-value=7.3 Score=40.96 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=28.2
Q ss_pred CChhhHHHHHHHHhhccCCCCCCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 8 HYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
|...||-....+...+-.....+-.|..+.+.++|||.+.+.|+- +++.|. ++|.+|...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~vlVTGas~gIG~a-----ia~~L~-----~~G~~V~~~ 64 (291)
T 3cxt_A 5 HHHHHHSSGLVPRGSHMNQQFSLDQFSLKGKIALVTGASYGIGFA-----IASAYA-----KAGATIVFN 64 (291)
T ss_dssp -------------------CCCGGGGCCTTCEEEEETCSSHHHHH-----HHHHHH-----HTTCEEEEE
T ss_pred cccccccccccCHhHHhccccCccccCCCCCEEEEeCCCcHHHHH-----HHHHHH-----HCCCEEEEE
Confidence 334567777766666555433333344556789999999999884 455566 678887654
No 423
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=51.22 E-value=9.7 Score=44.85 Aligned_cols=33 Identities=24% Similarity=0.194 Sum_probs=28.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
.|+|+|. +|+||||++..|.+.|. ++|..+..+
T Consensus 54 lIvLtGl-sGSGKSTlAr~La~~L~-----~~G~~~v~l 86 (630)
T 1x6v_B 54 TVWLTGL-SGAGKTTVSMALEEYLV-----CHGIPCYTL 86 (630)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred EEEEEeC-CCCCHHHHHHHHHHHHH-----hcCCeEEEe
Confidence 4889998 89999999999999997 677776554
No 424
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=50.93 E-value=8 Score=37.90 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=16.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHH
Q 002941 39 TFQIWSANTSLGKTLVSAGLSS 60 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~ 60 (863)
.+.|.|. ++||||++...|+.
T Consensus 32 ki~vvG~-~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGD-GAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEES-TTSSHHHHHHHHHH
T ss_pred EEEEECc-CCCCHHHHHHHHHh
Confidence 4888997 89999998866654
No 425
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=50.40 E-value=14 Score=37.42 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=25.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
-|.|.|. .|+||||++..|...|. . |..|...
T Consensus 28 ~i~i~G~-~GsGKsT~~~~l~~~l~-----~-~~~~~~~ 59 (229)
T 4eaq_A 28 FITFEGP-EGSGKTTVINEVYHRLV-----K-DYDVIMT 59 (229)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHHHT-----T-TSCEEEE
T ss_pred EEEEEcC-CCCCHHHHHHHHHHHHh-----c-CCCceee
Confidence 4677777 79999999999999997 6 7766543
No 426
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=50.08 E-value=8.5 Score=38.08 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l 62 (863)
.|.|+|. .|+|||||+..|.+.+
T Consensus 14 iIgltG~-~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 14 VIGVTGK-IGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHhc
Confidence 4788886 9999999999988764
No 427
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=49.77 E-value=12 Score=38.97 Aligned_cols=34 Identities=18% Similarity=0.434 Sum_probs=27.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.++++|. +|+|||+++..|+..+. ..+..+.++.
T Consensus 49 ~~ll~G~-~GtGKt~la~~la~~~~-----~~~~~~~~~~ 82 (311)
T 4fcw_A 49 SFLFLGP-TGVGKTELAKTLAATLF-----DTEEAMIRID 82 (311)
T ss_dssp EEEEESC-SSSSHHHHHHHHHHHHH-----SCGGGEEEEE
T ss_pred EEEEECC-CCcCHHHHHHHHHHHHc-----CCCcceEEee
Confidence 5899997 89999999999999987 5555565554
No 428
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=49.73 E-value=12 Score=35.47 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=18.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHH
Q 002941 39 TFQIWSANTSLGKTLVSAGLSS 60 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~ 60 (863)
.|+|.|. +|+||||++..|++
T Consensus 4 ~I~i~G~-~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGC-PGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECC-TTSSHHHHHHHHHH
T ss_pred EEEEecC-CCCCHHHHHHHHHh
Confidence 4778887 99999999999887
No 429
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=49.54 E-value=12 Score=40.19 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=21.4
Q ss_pred CCC-eEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 36 SHP-TFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 36 ~~~-~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
+|+ .|+|+|+ |+||||+++..|++.+.
T Consensus 8 ~~~~~i~i~Gp-tgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 8 SLPKAIFLMGP-TASGKTALAIELRKILP 35 (316)
T ss_dssp CCCEEEEEECC-TTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECC-CccCHHHHHHHHHHhCC
Confidence 444 4667777 99999999999998764
No 430
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=49.49 E-value=12 Score=41.67 Aligned_cols=35 Identities=6% Similarity=0.033 Sum_probs=30.8
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
..+.|-|||| -|||+++..|...|+ ..|++|+.+.
T Consensus 38 ~~~vI~VtGT---nGKtTT~~~l~~iL~-----~~G~~vg~~~ 72 (428)
T 1jbw_A 38 QGRYIHVTGT---NGKGSAANAIAHVLE-----ASGLTVGLYT 72 (428)
T ss_dssp SSCEEEEECS---SCHHHHHHHHHHHHH-----HTTCCEEEEC
T ss_pred cCcEEEEECC---CChHHHHHHHHHHHH-----HCCCCEEEEe
Confidence 4567999999 599999999999999 8899998775
No 431
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=48.97 E-value=12 Score=43.08 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=22.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.|+++|. +|+|||||+.+|.+.|.
T Consensus 397 ~I~l~Gl-sGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 397 SIVLGNS-LTVSREQLSIALLSTFL 420 (511)
T ss_dssp EEEECTT-CCSCHHHHHHHHHHHHT
T ss_pred EEEeccc-CCCCHHHHHHHHHHHHH
Confidence 5888888 79999999999999997
No 432
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=48.79 E-value=11 Score=38.46 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=20.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.|+|+|. .|+||||++..|++.+.
T Consensus 31 ~I~l~G~-~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 31 RYIFLGA-PGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHHC
T ss_pred EEEEECC-CCCCHHHHHHHHHHHhC
Confidence 4888887 89999999999998763
No 433
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=48.34 E-value=12 Score=42.83 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=34.1
Q ss_pred CCeEEEEe-CCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWS-ANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~-t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|+-||||| .-++.||-.+++.|.+.|+ ++|++|...|
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~-----~~g~~v~~~k 40 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLK-----RRGYNVTAVK 40 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHH-----HCCceEEEEe
Confidence 56799998 6699999999999999999 9999999999
No 434
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=48.13 E-value=16 Score=38.61 Aligned_cols=24 Identities=13% Similarity=0.182 Sum_probs=21.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.+.|+|. +|+||||++..|.+.|.
T Consensus 33 ii~I~G~-sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 33 FIFFSGP-QGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHhh
Confidence 4677776 99999999999999987
No 435
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=48.12 E-value=10 Score=42.57 Aligned_cols=35 Identities=17% Similarity=0.396 Sum_probs=28.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCC--CCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA--NKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~--g~~v~~~K 78 (863)
+.++|+|. +|+|||+++.+++..+. .. +.++.++.
T Consensus 131 ~~lll~Gp-~G~GKTtLa~aia~~l~-----~~~~~~~v~~v~ 167 (440)
T 2z4s_A 131 NPLFIYGG-VGLGKTHLLQSIGNYVV-----QNEPDLRVMYIT 167 (440)
T ss_dssp CCEEEECS-SSSSHHHHHHHHHHHHH-----HHCCSSCEEEEE
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHH-----HhCCCCeEEEee
Confidence 35999998 89999999999999886 33 66676654
No 436
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=48.03 E-value=11 Score=40.56 Aligned_cols=25 Identities=24% Similarity=0.121 Sum_probs=22.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
+.++|+|. +|+|||+++..+++.+.
T Consensus 46 ~~vll~G~-~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 46 FSNLFLGL-TGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CEEEEEEC-TTSSHHHHHHHHHHHHH
T ss_pred CcEEEECC-CCCCHHHHHHHHHHHHH
Confidence 35999998 99999999999999885
No 437
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=47.66 E-value=12 Score=41.79 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=30.9
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
..|.|-|||| -|||+++..|...|+ ..|++|+.|.
T Consensus 51 ~~~vI~VtGT---NGKgSt~~~l~~iL~-----~~G~~vg~~t 85 (437)
T 3nrs_A 51 APKIFTVAGT---NGKGTTCCTLEAILL-----AAGLRVGVYS 85 (437)
T ss_dssp SSEEEEEECS---SSHHHHHHHHHHHHH-----HTTCCEEEEC
T ss_pred cCCEEEEECC---cChHHHHHHHHHHHH-----HCCCcEEEEC
Confidence 3567999999 599999999999998 8899999886
No 438
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=47.38 E-value=12 Score=37.87 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=22.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.+.++|+|. +|+|||+++.+|+..+.
T Consensus 39 ~~~vll~G~-~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 39 PKGALLLGP-PGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCEEEEESC-TTSSHHHHHHHHHHHHT
T ss_pred CceEEEECC-CCCCHHHHHHHHHHHhC
Confidence 456999998 89999999999998764
No 439
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=46.99 E-value=11 Score=37.65 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSF 62 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l 62 (863)
|+|+|. .|+||||++..|++.|
T Consensus 3 I~l~G~-~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILIFGP-NGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEECC-TTSCHHHHHHHHHHHH
T ss_pred EEEECC-CCCCHHHHHHHHHHHh
Confidence 778888 8999999999999876
No 440
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=46.48 E-value=13 Score=37.23 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=26.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHH-hccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSS-FLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~-l~~~~~~~~g~~v~~~K 78 (863)
.+.+.+-.+|+|||++++-++.. +. +.|.+|.|+=
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~-----~~~~~v~~~s 66 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAE-----EYGEPGVFVT 66 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH-----HHCCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHH-----hcCCCceeec
Confidence 46666777999999999987754 44 5677888875
No 441
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=46.26 E-value=10 Score=37.12 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=18.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHH
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSS 60 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~ 60 (863)
..+.|+|. .|+||||++..|+.
T Consensus 3 ~~i~l~G~-~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGG-IGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECS-TTSCHHHHHHHHHT
T ss_pred cEEEEECC-CCCCHHHHHHHHHH
Confidence 35889997 89999999988765
No 442
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=46.05 E-value=11 Score=43.95 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=27.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCC-CceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSAN-KKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g-~~v~~~K 78 (863)
.|+|+|. +|+|||+++..|.+.|. .+| +.+.++.
T Consensus 398 ~I~l~Gl-sGSGKSTiA~~La~~L~-----~~G~~~~~~lD 432 (573)
T 1m8p_A 398 TIFLTGY-MNSGKDAIARALQVTLN-----QQGGRSVSLLL 432 (573)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH-----HHCSSCEEEEE
T ss_pred EEEeecC-CCCCHHHHHHHHHHHhc-----ccCCceEEEEC
Confidence 4888998 78999999999999987 556 6665553
No 443
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=45.99 E-value=14 Score=41.05 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=30.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (863)
...++|.|+ ||+|||+....|+..+. +.|.++..+-|
T Consensus 53 ~~h~~i~G~-tGsGKs~~~~~li~~~~-----~~g~~viv~Dp 89 (437)
T 1e9r_A 53 PRHLLVNGA-TGTGKSVLLRELAYTGL-----LRGDRMVIVDP 89 (437)
T ss_dssp GGCEEEEEC-TTSSHHHHHHHHHHHHH-----HTTCEEEEEEE
T ss_pred cceEEEECC-CCCCHHHHHHHHHHHHH-----HCCCcEEEEeC
Confidence 346899998 99999999877888877 77888888876
No 444
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=45.72 E-value=12 Score=40.61 Aligned_cols=36 Identities=11% Similarity=0.069 Sum_probs=28.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.+-|+|. +|+|||++.-.|+..+. ..+.+|..+-
T Consensus 74 ~~~v~lvG~-pgaGKSTLln~L~~~~~-----~~~~~v~V~~ 109 (349)
T 2www_A 74 AFRVGLSGP-PGAGKSTFIEYFGKMLT-----ERGHKLSVLA 109 (349)
T ss_dssp CEEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred ceEEEEEcC-CCCCHHHHHHHHHHHhh-----hcCCeEEEEe
Confidence 345889998 99999999999999987 5566665543
No 445
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=45.68 E-value=12 Score=36.94 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=19.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSF 62 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l 62 (863)
|.|+|. +|+|||++...|+..+
T Consensus 4 IVi~GP-SG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGP-SGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECC-TTSSHHHHHHHHHHHC
T ss_pred EEEECC-CCCCHHHHHHHHHHhC
Confidence 778888 8999999999888765
No 446
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=45.66 E-value=17 Score=41.28 Aligned_cols=35 Identities=11% Similarity=-0.063 Sum_probs=30.1
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
..+.|-|||| .|||+++..|...|. ..|++++.+.
T Consensus 107 ~~~vI~VTGT---nGKTTT~~ml~~iL~-----~~g~~~~~~g 141 (498)
T 1e8c_A 107 NLRLVGVTGT---NGKTTTTQLLAQWSQ-----LLGEISAVMG 141 (498)
T ss_dssp SSEEEEEESS---SCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred cCeEEEEeCC---cChHHHHHHHHHHHH-----hCCCCEEEEC
Confidence 3457889998 599999999999998 8899988775
No 447
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=45.65 E-value=13 Score=38.93 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=19.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHH
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSS 60 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~ 60 (863)
+..|.|+|. .|+||||++..|.+
T Consensus 75 ~~iI~I~G~-~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGI-SGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEEC-TTSCHHHHHHHHHH
T ss_pred CEEEEEECC-CCCCHHHHHHHHHH
Confidence 456889998 99999999998873
No 448
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=45.57 E-value=13 Score=38.41 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=22.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.+.++|+|. +|+|||+++..|++.|.
T Consensus 48 g~~i~l~G~-~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGM-MGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECS-TTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHhcC
Confidence 356999999 89999999999999874
No 449
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=45.57 E-value=13 Score=38.44 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=22.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.+.++|+|. +|+|||+++.+|+..+.
T Consensus 51 ~~~~ll~G~-~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 51 PKGILLYGP-PGTGKTLLAKAVATETN 76 (285)
T ss_dssp CSEEEEESS-SSSSHHHHHHHHHHHTT
T ss_pred CCeEEEECC-CCCcHHHHHHHHHHHhC
Confidence 346999998 89999999999988764
No 450
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=45.48 E-value=16 Score=39.68 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=28.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.|.|. .|+|||+++.-++..+. +.|.+|.|+-
T Consensus 63 iv~I~G~-pGsGKTtLal~la~~~~-----~~g~~vlyi~ 96 (349)
T 2zr9_A 63 VIEIYGP-ESSGKTTVALHAVANAQ-----AAGGIAAFID 96 (349)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----hCCCeEEEEE
Confidence 4666765 99999999999998887 7788898886
No 451
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=45.48 E-value=15 Score=38.25 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=26.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.|.|. +|+|||++...|+..+.. ..|.+|.|+-
T Consensus 37 ~~~i~G~-~G~GKTTl~~~ia~~~~~----~~G~~v~~~~ 71 (296)
T 1cr0_A 37 VIMVTSG-SGMGKSTFVRQQALQWGT----AMGKKVGLAM 71 (296)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHHHH----TSCCCEEEEE
T ss_pred EEEEEeC-CCCCHHHHHHHHHHHHHH----HcCCeEEEEe
Confidence 3556665 999999999999988862 3477888774
No 452
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=45.07 E-value=24 Score=35.15 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=24.4
Q ss_pred EEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 42 IWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 42 i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|=|. -|+||||.+..|.+.|. +|++|...+
T Consensus 7 ~EG~-dGsGKsTq~~~L~~~L~------~~~~v~~~~ 36 (205)
T 4hlc_A 7 FEGP-EGSGKTTVINEVYHRLV------KDYDVIMTR 36 (205)
T ss_dssp EECC-TTSCHHHHHHHHHHHHT------TTSCEEEEE
T ss_pred EECC-CCCcHHHHHHHHHHHHH------CCCCEEEee
Confidence 3377 59999999999999985 488887766
No 453
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=44.92 E-value=15 Score=39.01 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=30.8
Q ss_pred CCCCCCC-CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 30 PLDLPLS-HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 30 ~~~~~~~-~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
++.+... ...+.|.|. +|+||||+...|+..+. ..+.+|.+.
T Consensus 92 ~l~~~~~~g~vi~lvG~-nGsGKTTll~~Lag~l~-----~~~g~V~l~ 134 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGV-NGGGKTTSLGKLAHRLK-----NEGTKVLMA 134 (302)
T ss_dssp SCCCCSSSCEEEEEECC-TTSCHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred ccccccCCCcEEEEEcC-CCCCHHHHHHHHHHHHH-----HcCCeEEEE
Confidence 4444333 236889997 99999999999999988 556666543
No 454
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=44.76 E-value=14 Score=37.53 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=22.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.++++|.|. +|+|||+++.+|+..+.
T Consensus 45 ~~~vll~G~-~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 45 PKGVLMVGP-PGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCEEEEECC-TTSCHHHHHHHHHHHHT
T ss_pred CCeEEEECc-CCCCHHHHHHHHHHHcC
Confidence 346999998 99999999999998764
No 455
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=44.76 E-value=13 Score=36.70 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=25.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
.++|.|. +|+|||+++..|.+.|.. ..|+++.++
T Consensus 27 ~i~~~G~-~GsGKsT~~~~l~~~l~~----~~g~~~~~~ 60 (211)
T 1m7g_A 27 TIWLTGL-SASGKSTLAVELEHQLVR----DRRVHAYRL 60 (211)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHHH----HHCCCEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHhcc----ccCCcEEEE
Confidence 4788888 899999999999998741 235555544
No 456
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=44.69 E-value=11 Score=40.54 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=22.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.+.++|+|. +|+|||+++..+++.+.
T Consensus 44 ~~~vll~G~-~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 44 PSNALLYGL-TGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCEEECBC-TTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECC-CCCCHHHHHHHHHHHHH
Confidence 345899998 89999999999999885
No 457
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=44.57 E-value=13 Score=39.71 Aligned_cols=35 Identities=29% Similarity=0.306 Sum_probs=28.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCC---CCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA---NKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~---g~~v~~~K 78 (863)
..++|+|. +|+|||+++..+++.+. .. +..+.++.
T Consensus 46 ~~vli~G~-~G~GKTtl~~~l~~~~~-----~~~~~~~~~~~i~ 83 (386)
T 2qby_A 46 NNIFIYGL-TGTGKTAVVKFVLSKLH-----KKFLGKFKHVYIN 83 (386)
T ss_dssp CCEEEEEC-TTSSHHHHHHHHHHHHH-----HHTCSSCEEEEEE
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHH-----HHhcCCceEEEEE
Confidence 45899998 89999999999999886 33 55666665
No 458
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=44.56 E-value=16 Score=38.68 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=26.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.++|+|- +|+|||+++.++..... +.+..+.++.
T Consensus 27 ~vLi~Ge-~GtGKt~lAr~i~~~~~-----~~~~~~v~v~ 60 (304)
T 1ojl_A 27 TVLIHGD-SGTGKELVARALHACSA-----RSDRPLVTLN 60 (304)
T ss_dssp CEEEESC-TTSCHHHHHHHHHHHSS-----CSSSCCCEEE
T ss_pred cEEEECC-CCchHHHHHHHHHHhCc-----ccCCCeEEEe
Confidence 4889997 99999999999999875 5555555544
No 459
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=44.56 E-value=13 Score=34.18 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=18.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHH
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSS 60 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~ 60 (863)
|+.+.|.|. +++|||++...|+.
T Consensus 1 ~~ki~v~G~-~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 1 MHKVVIVGR-PNVGKSSLFNRLLK 23 (161)
T ss_dssp CEEEEEECC-TTSSHHHHHHHHHH
T ss_pred CCEEEEECC-CCCCHHHHHHHHhC
Confidence 467899995 89999998776654
No 460
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}
Probab=44.39 E-value=12 Score=38.85 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=27.4
Q ss_pred CChhhHHHHHHHHhhccCCCCCCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 8 HYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
|...||...+...+.+... .|..+.+.++|||.+.+.|+. +++.|. ++|.+|...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-----~~~l~~k~vlVTGas~gIG~a-----ia~~L~-----~~G~~V~~~ 59 (276)
T 2b4q_A 5 HHHHHHSSGLVPRGSHMHP-----YFSLAGRIALVTGGSRGIGQM-----IAQGLL-----EAGARVFIC 59 (276)
T ss_dssp ----------------CCT-----TTCCTTCEEEEETTTSHHHHH-----HHHHHH-----HTTCEEEEE
T ss_pred cccccccCCcccccccccc-----ccCCCCCEEEEeCCCChHHHH-----HHHHHH-----HCCCEEEEE
Confidence 3345777777766644432 344566789999999999985 555566 678887654
No 461
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=44.38 E-value=14 Score=42.65 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=27.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
.|+++|. .|+|||+++..|.+.|. .+|+++.++
T Consensus 374 ~I~l~G~-~GsGKSTia~~La~~L~-----~~G~~~~~l 406 (546)
T 2gks_A 374 CVWLTGL-PCAGKSTIAEILATMLQ-----ARGRKVTLL 406 (546)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred EEEccCC-CCCCHHHHHHHHHHHhh-----hcCCeEEEE
Confidence 4778887 78999999999999987 677666554
No 462
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=44.30 E-value=12 Score=36.28 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=20.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l 62 (863)
..+.|+|. +|+||||++..|+..+
T Consensus 7 ~~i~l~G~-~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGP-SGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECS-TTSCHHHHHHHHHHCT
T ss_pred CEEEEECC-CCCCHHHHHHHHHHhh
Confidence 35788888 8999999999988876
No 463
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=43.73 E-value=20 Score=41.35 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=29.9
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.++.|-|||| .|||+++..|...|. ..|++++.+.
T Consensus 145 ~~~vI~VTGT---nGKTTT~~ml~~iL~-----~~G~~~g~~g 179 (535)
T 2wtz_A 145 RLTVIGITGT---SGKTTTTYLVEAGLR-----AAGRVAGLIG 179 (535)
T ss_dssp SSEEEEEESS---SCHHHHHHHHHHHHH-----HTTCCEEEES
T ss_pred cceEEEeeCC---CChHHHHHHHHHHHH-----HCCCCEEEEC
Confidence 3457889998 599999999999998 8899988775
No 464
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=43.54 E-value=13 Score=38.35 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=22.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.+.++|+|. +|+|||+++.++++.+.
T Consensus 64 ~~~vLl~G~-~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 64 LVSVLLEGP-PHSGKTALAAKIAEESN 89 (272)
T ss_dssp EEEEEEECS-TTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECC-CCCcHHHHHHHHHHHhC
Confidence 346999998 89999999999998753
No 465
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=43.07 E-value=31 Score=41.38 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=29.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.++++|. +|+|||+++.+|++.+. ..+..+.++.
T Consensus 523 ~~Ll~Gp-~GtGKT~lA~ala~~l~-----~~~~~~i~i~ 556 (758)
T 3pxi_A 523 SFIFLGP-TGVGKTELARALAESIF-----GDEESMIRID 556 (758)
T ss_dssp EEEEESC-TTSSHHHHHHHHHHHHH-----SCTTCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHhc-----CCCcceEEEe
Confidence 5999998 89999999999999987 6666776665
No 466
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=42.84 E-value=15 Score=38.20 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=22.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
+.++|+|. +|+|||+++..+++.+.
T Consensus 51 ~~vll~G~-~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 51 KNILMIGP-TGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCEEEECC-TTSSHHHHHHHHHHHHT
T ss_pred ceEEEECC-CCCCHHHHHHHHHHHhC
Confidence 45899998 89999999999999874
No 467
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=42.56 E-value=17 Score=39.24 Aligned_cols=36 Identities=8% Similarity=0.123 Sum_probs=29.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
...+.|+| .+|+|||++...|+..+. ..|.+|..+-
T Consensus 56 ~~~i~i~G-~~g~GKSTl~~~l~~~~~-----~~~~~v~v~~ 91 (341)
T 2p67_A 56 TLRLGVTG-TPGAGKSTFLEAFGMLLI-----REGLKVAVIA 91 (341)
T ss_dssp SEEEEEEE-CTTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CEEEEEEc-CCCCCHHHHHHHHHHHHH-----hcCCeEEEEe
Confidence 34588899 699999999999999987 6677776543
No 468
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=42.53 E-value=17 Score=39.51 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
...++++|. +|+|||+++.+|++.+.
T Consensus 72 ~~~ill~Gp-~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGP-TGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECC-TTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECC-CCCCHHHHHHHHHHHhC
Confidence 446999998 89999999999999873
No 469
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=42.39 E-value=15 Score=39.39 Aligned_cols=33 Identities=21% Similarity=0.110 Sum_probs=27.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
.+.|-|||| .||||+|..|...|+ +.|+++.++
T Consensus 108 ~~~IaVTGT---nGKTTTt~ll~~iL~-----~~g~~~~~~ 140 (326)
T 3eag_A 108 HWVLGVAGT---HGKTTTASMLAWVLE-----YAGLAPGFL 140 (326)
T ss_dssp SEEEEEESS---SCHHHHHHHHHHHHH-----HTTCCCEEE
T ss_pred CCEEEEECC---CCHHHHHHHHHHHHH-----HcCCCceEE
Confidence 456888888 599999999999998 888877654
No 470
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=41.92 E-value=16 Score=35.45 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l 62 (863)
..+.|+|. +|+||||+...|+..+
T Consensus 8 ~ii~l~Gp-~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAP-SGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECC-TTSCHHHHHHHHHHHS
T ss_pred cEEEEECc-CCCCHHHHHHHHHhhC
Confidence 35788888 8999999999988764
No 471
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=41.83 E-value=17 Score=35.57 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.++|+|. +|+|||+++..+++.+.
T Consensus 47 ~~ll~G~-~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGT-RGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECS-TTSCHHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHhc
Confidence 5889998 89999999999999886
No 472
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=41.56 E-value=14 Score=39.35 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=29.9
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (863)
+++.+.|+|- .|+||||+-..|+.. ..|.+++..+|
T Consensus 3 ~i~v~~i~G~-~GaGKTTll~~l~~~-------~~~~~~aVi~~ 38 (318)
T 1nij_A 3 PIAVTLLTGF-LGAGKTTLLRHILNE-------QHGYKIAVIEN 38 (318)
T ss_dssp CEEEEEEEES-SSSSCHHHHHHHHHS-------CCCCCEEEECS
T ss_pred cccEEEEEec-CCCCHHHHHHHHHhh-------cCCCcEEEEEe
Confidence 4677899997 899999998887775 35889999997
No 473
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=41.47 E-value=17 Score=39.77 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=28.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.|.| .+|+|||++++-++..+. +.|.+|.|+-
T Consensus 76 li~I~G-~pGsGKTtlal~la~~~~-----~~g~~vlyi~ 109 (366)
T 1xp8_A 76 ITEIYG-PESGGKTTLALAIVAQAQ-----KAGGTCAFID 109 (366)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEEc-CCCCChHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 355655 589999999999999887 7788999987
No 474
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=41.30 E-value=14 Score=41.52 Aligned_cols=34 Identities=21% Similarity=0.099 Sum_probs=30.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.|-|||| -|||+++..|...|+ ..|++|+.+.
T Consensus 52 ~~vI~VTGT---nGKtTT~~~l~~iL~-----~~G~~vg~~~ 85 (442)
T 1o5z_A 52 YKTIHIGGT---NGKGSVANMVSNILV-----SQGYRVGSYY 85 (442)
T ss_dssp SEEEEEECS---SSHHHHHHHHHHHHH-----HHTCCEEEEC
T ss_pred CCEEEEECC---cCHHHHHHHHHHHHH-----HCCCCEEEEC
Confidence 467889999 599999999999999 8899998876
No 475
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=41.14 E-value=16 Score=35.34 Aligned_cols=24 Identities=17% Similarity=0.211 Sum_probs=20.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.+.|+|. +|+||||+...|+..+.
T Consensus 3 ii~l~Gp-sGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGP-SGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESS-SSSSHHHHHHHHHHHCG
T ss_pred EEEEECC-CCCCHHHHHHHHHhhCC
Confidence 3677887 89999999999988764
No 476
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=40.95 E-value=19 Score=40.42 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=29.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.+.+-.+|+|||+++.-++..+.. +.|.+|.||=
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~----~~g~~Vl~~s 239 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVAT----KTNENVAIFS 239 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH----HSSCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH----hCCCcEEEEE
Confidence 46777777999999999999998761 2588888885
No 477
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=40.89 E-value=18 Score=40.93 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=28.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
.+.|-|||| -|||++|..|...|+ ..|++++.+
T Consensus 114 ~~vI~VTGT---nGKTTTt~ml~~iL~-----~~G~~~~~~ 146 (469)
T 1j6u_A 114 KEEFAVTGT---DGKTTTTAMVAHVLK-----HLRKSPTVF 146 (469)
T ss_dssp CCEEEEECS---SSHHHHHHHHHHHHH-----HTTCCCEEE
T ss_pred CCEEEEECC---CCHHHHHHHHHHHHH-----HcCCCceEE
Confidence 467999999 499999999999999 889888654
No 478
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=40.87 E-value=31 Score=38.62 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=26.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCC-ceeEEcc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANK-KFVYLKP 79 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~-~v~~~KP 79 (863)
.++|+|. .|+|||++...++..|. +.|. +|...=|
T Consensus 47 ~~li~G~-aGTGKT~ll~~~~~~l~-----~~~~~~il~~a~ 82 (459)
T 3upu_A 47 HVTINGP-AGTGATTLTKFIIEALI-----STGETGIILAAP 82 (459)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHHHH-----HTTCCCEEEEES
T ss_pred EEEEEeC-CCCCHHHHHHHHHHHHH-----hcCCceEEEecC
Confidence 4666665 99999999999999998 6666 4554443
No 479
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=40.86 E-value=17 Score=38.94 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
+.++|+|. +|+|||+++.++++.+.
T Consensus 71 ~~vLl~Gp-pGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 71 RAVLIAGQ-PGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CEEEEEES-TTSSHHHHHHHHHHHHC
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHhc
Confidence 46999998 89999999999999985
No 480
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=40.68 E-value=19 Score=38.93 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=22.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
...++++|. +|+|||+++.+|++.+.
T Consensus 51 ~~~vll~Gp-pGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGP-TGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECC-TTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHcC
Confidence 456999998 99999999999999873
No 481
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=40.63 E-value=17 Score=35.53 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.+-|+|. +|+||||++..|+..+.
T Consensus 8 ~i~i~G~-~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGG-TASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHHG
T ss_pred EEEEECC-CCCCHHHHHHHHHHHhC
Confidence 4778897 79999999999988775
No 482
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=40.50 E-value=26 Score=37.37 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=26.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCC------CCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA------NKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~------g~~v~~~K 78 (863)
.+.|+|. +|+|||+++.-|+.... .. |.+|.|+-
T Consensus 109 i~~i~G~-~GsGKT~la~~la~~~~-----~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 109 MTEFFGE-FGSGKTQLCHQLSVNVQ-----LPPEKGGLSGKAVYID 148 (324)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHTT-----SCGGGTCCSCEEEEEE
T ss_pred EEEEECC-CCCCHhHHHHHHHHHHh-----cccccCCCCCeEEEEE
Confidence 4566665 99999999999998765 33 67888876
No 483
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=40.49 E-value=19 Score=39.32 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=30.9
Q ss_pred CCCCCCCC-CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 30 PLDLPLSH-PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 30 ~~~~~~~~-~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
++.+.... ..+.|.|. +|+||||+...|+..+. ..+.+|.+.
T Consensus 149 ~l~l~~~~g~vi~lvG~-nGsGKTTll~~Lag~l~-----~~~G~V~l~ 191 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGV-NGGGKTTSLGKLAHRLK-----NEGTKVLMA 191 (359)
T ss_dssp SCCCCSSSSEEEEEECC-TTSCHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred CcceecCCCeEEEEEcC-CCChHHHHHHHHHhhcc-----ccCCEEEEe
Confidence 44443333 35889997 99999999999999987 556666543
No 484
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=40.46 E-value=42 Score=35.95 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.+-|+|. +|+||||++..|...+.
T Consensus 94 iigI~Gp-sGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGS-VAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHHT
T ss_pred EEEEECC-CCCCHHHHHHHHHHHhc
Confidence 3667776 89999999999998886
No 485
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=40.14 E-value=18 Score=37.59 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=22.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.++++|+|. +|+|||+++.+++..+.
T Consensus 54 ~~~vll~Gp-~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 54 AKGLLLFGP-PGNGKTLLARAVATECS 79 (297)
T ss_dssp CSEEEEESS-SSSCHHHHHHHHHHHTT
T ss_pred CCeEEEECc-CCCCHHHHHHHHHHHhC
Confidence 457999998 89999999999988763
No 486
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=40.01 E-value=18 Score=36.78 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=21.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
++++|.|. +|+|||++..+|+..+.
T Consensus 50 ~g~ll~G~-~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 50 KGVLLVGP-PGVGKTHLARAVAGEAR 74 (254)
T ss_dssp SEEEEECC-TTSSHHHHHHHHHHHTT
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHhC
Confidence 35999998 89999999999998763
No 487
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=39.81 E-value=16 Score=35.01 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=18.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHH
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSS 61 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~ 61 (863)
.+.|+|. +|+||||+...|+..
T Consensus 11 ~i~l~G~-~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGH-PGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEC-TTSCHHHHHHHHHTC
T ss_pred EEEEECC-CCCCHHHHHHHHHhc
Confidence 5888888 899999999888764
No 488
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=39.53 E-value=10 Score=38.04 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=14.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHH-HHh
Q 002941 38 PTFQIWSANTSLGKTLVSAGLS-SSF 62 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~-~~l 62 (863)
..+.|+|. +|+||||+...|+ ..+
T Consensus 28 ~ii~l~Gp-~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSP-SGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECS-CC----CHHHHHHC---
T ss_pred CEEEEECC-CCCCHHHHHHHHHhcCC
Confidence 45788887 8999999999988 664
No 489
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=38.75 E-value=18 Score=36.57 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=20.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
-|.|.|. .|+||||++..|++.|.
T Consensus 4 ~i~~~G~-~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGN-IAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEC-TTSSHHHHHHHHHHHCT
T ss_pred EEEEEcC-CCCCHHHHHHHHHHHcC
Confidence 3777887 89999999999999885
No 490
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=38.52 E-value=20 Score=35.26 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=19.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHH
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSS 60 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~ 60 (863)
.++.|+|. +|+|||++++.|++
T Consensus 17 ~gvli~G~-SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGE-ANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEES-SSSSHHHHHHHHHH
T ss_pred EEEEEEcC-CCCCHHHHHHHHHH
Confidence 47899997 99999999998876
No 491
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=38.40 E-value=20 Score=35.15 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=21.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
+.+.|+|. +|+||||+...|++.+.
T Consensus 5 ~~i~lvGp-sGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGP-SGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECC-TTSSHHHHHHHHHHHHT
T ss_pred CEEEEECC-CCCCHHHHHHHHHhhCc
Confidence 35888888 89999999999988763
No 492
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=38.09 E-value=23 Score=34.77 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=22.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
++|+| +++||||+++.-|+. + |.++.|+-
T Consensus 2 ilV~G-g~~SGKS~~A~~la~--------~-~~~~~yia 30 (180)
T 1c9k_A 2 ILVTG-GARSGKSRHAEALIG--------D-APQVLYIA 30 (180)
T ss_dssp EEEEE-CTTSSHHHHHHHHHC--------S-CSSEEEEE
T ss_pred EEEEC-CCCCcHHHHHHHHHh--------c-CCCeEEEe
Confidence 78999 599999999987652 4 66788865
No 493
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=38.06 E-value=18 Score=35.77 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=18.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHH
Q 002941 39 TFQIWSANTSLGKTLVSAGLSS 60 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~ 60 (863)
.|.|+|. .|+||||++..|..
T Consensus 6 ~I~i~G~-~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGG-IGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECC-TTSCHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHH
Confidence 4788887 99999999988876
No 494
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=37.71 E-value=20 Score=37.91 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=21.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
+.++|+|. +|+|||+++..+++.+.
T Consensus 56 ~~vll~G~-~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGP-AGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECS-TTSSHHHHHHHHHHHTT
T ss_pred CeEEEECc-CCCCHHHHHHHHHHHhC
Confidence 35899998 99999999999988753
No 495
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=37.38 E-value=22 Score=36.06 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=21.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
+..|-|+|. .|+|||+|+..|++.|-
T Consensus 14 ~~iI~i~g~-~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIERE-YGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEEC-TTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCC-CCCCHHHHHHHHHHHcC
Confidence 345777776 99999999999999873
No 496
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=37.26 E-value=27 Score=37.18 Aligned_cols=26 Identities=8% Similarity=0.213 Sum_probs=22.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.+++++.|. +|+|||+++.+++..+.
T Consensus 45 ~~~iLL~Gp-pGtGKT~la~ala~~~~ 70 (322)
T 1xwi_A 45 WRGILLFGP-PGTGKSYLAKAVATEAN 70 (322)
T ss_dssp CSEEEEESS-SSSCHHHHHHHHHHHTT
T ss_pred CceEEEECC-CCccHHHHHHHHHHHcC
Confidence 357999998 99999999999999873
No 497
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=36.69 E-value=21 Score=35.23 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=19.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l 62 (863)
.|.|+|. .|+|||+++..|.+.+
T Consensus 5 ~i~i~G~-~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGP-AAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECC-TTSSHHHHHHHHHHHT
T ss_pred EEEEECC-CCCCHHHHHHHHHHhc
Confidence 4888887 8999999999988865
No 498
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=36.55 E-value=33 Score=35.36 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=20.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.+.|.|. +|+|||+++..|+..+.
T Consensus 32 i~~i~G~-~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 32 VGALVSP-GGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEEEcC-CCCCHHHHHHHHHHHHh
Confidence 4667776 89999999999998765
No 499
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=36.39 E-value=22 Score=37.69 Aligned_cols=26 Identities=8% Similarity=0.243 Sum_probs=22.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.++++++|. +|+|||+++.+++..+.
T Consensus 51 ~~~vLl~Gp-pGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 51 TSGILLYGP-PGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCEEEEECS-SSSCHHHHHHHHHHHHT
T ss_pred CCeEEEECC-CCCcHHHHHHHHHHHHC
Confidence 457999998 89999999999988764
No 500
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=36.26 E-value=17 Score=35.53 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=17.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHH
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSS 60 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~ 60 (863)
..+.|.|. ++||||++...|+.
T Consensus 26 ~ki~vvG~-~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 26 KKLVVVGD-GACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEC-TTSSHHHHHHHHHH
T ss_pred cEEEEECc-CCCCHHHHHHHHhc
Confidence 36899997 99999998766554
Done!