RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 002941
(863 letters)
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 404
Score = 124 bits (312), Expect = 4e-31
Identities = 51/235 (21%), Positives = 97/235 (41%), Gaps = 20/235 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A ++EP+ G+ + DP + + + C ++ I DE+ TG R G D
Sbjct: 189 VAAFMVEPIQ-GEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYEN 247
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
PDI GK L+GG+ P++A L + + + K H +Y + LGC A +
Sbjct: 248 VRPDIVLLGKALSGGLYPVSAVLCDDDIMLTI------KPGEHFSTYGGNPLGCRVAIAA 301
Query: 740 IKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG 799
++ ++ N+ L + EL++ V V G L AI ++
Sbjct: 302 LEVLEE----ENLAENADKLGIILRNELMKL--PSDVVTAVRGKGLLNAIVIKET----- 350
Query: 800 YGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853
A + +LR++G+ +P G++I + + + + + + F
Sbjct: 351 -KDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILSF 404
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 124 bits (311), Expect = 6e-31
Identities = 92/480 (19%), Positives = 156/480 (32%), Gaps = 91/480 (18%)
Query: 384 GENFSVYQDQKNKFIGQQFDACASWWTQG-----PDATLQIELARDMGYTAARFGHVMFP 438
EN V+ + +++ D P ++ + + H F
Sbjct: 29 AENCRVWDVEGREYL----DFAGGIAVLNTGHLHP------KVVAAVEAQLKKLSHTCFQ 78
Query: 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498
YEP LE E++ Q V +A + GS A+E A+K+A
Sbjct: 79 VLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAA-------------- 124
Query: 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
+A G+YHG T + +G+ M
Sbjct: 125 -----TKRSGTIAFSGAYHGRTHYTL---------------ALTGKVNPYSAGMGLMPGH 164
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
+ P L+ + + + D
Sbjct: 165 VYRALYPCPLHGISEDDAIASIHRIFKNDAAPED-------------------------- 198
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
I A++IEPV GG + P F + L C I +I DEV +G R G + +
Sbjct: 199 -IAAIVIEPV-QGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQM 256
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAK 738
G PD+ + K + GG PLA V D+ G +Y+ + + C AA +
Sbjct: 257 GVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGG------LGGTYAGNPIACVAALE 309
Query: 739 SIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA 798
+K F+ + L++ H + V LG + AIEL G +
Sbjct: 310 VLKVFEQENLLQKANDLGQKLKDGLL----AIAEKHPEIGDVRGLGAMIAIELFEDGDHN 365
Query: 799 GYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855
+ A ++ + R+ G+ + G NV+ ++ Q L + Q +E +
Sbjct: 366 KPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEAKQ 425
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 119 bits (300), Expect = 1e-29
Identities = 52/236 (22%), Positives = 94/236 (39%), Gaps = 19/236 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A I+EP+ G+ + + + + C+ + + DEV TG R G
Sbjct: 187 VCAFIVEPI-QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYN 245
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
PD+ GK L+GG P++A LA + + K HG +Y + L + ++
Sbjct: 246 VKPDVILLGKALSGGHYPISAVLANDDIMLVI------KPGEHGSTYGGNPLAASICVEA 299
Query: 740 IKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG 799
+ + + N E L +++ + V+ V G LCAIE + N
Sbjct: 300 LNVLINEKLCENAEKLGGPFLE----NLKRELKDSKIVRDVRGKGLLCAIEFKNELVN-- 353
Query: 800 YGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854
+ KL+E+G+ R + I L C + E + + + ++ FD
Sbjct: 354 -----VLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFFD 404
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Length = 429
Score = 99.3 bits (246), Expect = 1e-22
Identities = 112/497 (22%), Positives = 163/497 (32%), Gaps = 91/497 (18%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT--QG---PDA 415
PFT V + S E + + + D +SWW G P
Sbjct: 13 ILHPFTSMT--SPLPVYPVVS--AEGCELILSDGRRLV----DGMSSWWAAIHGYNHP-- 62
Query: 416 TLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475
+L M HVMF + PA+E L+ +
Sbjct: 63 ----QLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADS------- 111
Query: 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535
+ L + K + L + YHGDT GAM P
Sbjct: 112 ----GSVAVEVAMKMALQYWQAKGEARQRF----LTFRNGYHGDTFGAMSVCDPDNSMHS 163
Query: 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595
L + + P + EW +V + R EI
Sbjct: 164 LWKGYL---------PENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEI--------- 205
Query: 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655
A+IIEP+V AGGM M P + + + K C I
Sbjct: 206 -------------------------AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGI 240
Query: 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS 715
+I DE+ TGF R G + PDI C GK LTGG + L+ATL T V ++
Sbjct: 241 LLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGE 300
Query: 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775
+HG ++ + L CAAA S+ + + LRE
Sbjct: 301 -AGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQL-----APARDAE 354
Query: 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSS 835
V V LG + +E A+L K E GV++RP G +IYLM
Sbjct: 355 MVADVRVLGAIGVVETTHPV--------NMAALQKFFVEQGVWIRPFGKLIYLMPPYIIL 406
Query: 836 PEVCSQLLLKLYQRLEE 852
P+ +L + + +++
Sbjct: 407 PQQLQRLTAAVNRAVQD 423
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 94.0 bits (233), Expect = 4e-21
Identities = 53/245 (21%), Positives = 87/245 (35%), Gaps = 38/245 (15%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
A+I+EPV GG+ P F R + Q + +I DE+ TG R G + G
Sbjct: 178 TAAVILEPVQ-GEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFG 236
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
VPDI K L GGV A + G HG ++ + L +
Sbjct: 237 IVPDILTLAKALGGGVPLGVAVMREEVARSMPKGG-------HGTTFGGNPLAM-----A 284
Query: 740 IKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG 799
+ ER W +E ++ I ++ V +G + +EL+
Sbjct: 285 AGVAAIRYLERTRLWERAAELGPWFMEKLRAI-PSPKIREVRGMGLMVGLELKEKA---- 339
Query: 800 YGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEE 858
A + + +E V G VI + P V + E+ ++V E
Sbjct: 340 -----APYIARLEKEHRVLALQAGPTVIRFLP-----PLVIEK---------EDLERVVE 380
Query: 859 KLKSC 863
+++
Sbjct: 381 AVRAV 385
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 80.3 bits (197), Expect = 2e-16
Identities = 66/453 (14%), Positives = 126/453 (27%), Gaps = 94/453 (20%)
Query: 384 GENFSVYQDQKNKFIGQQFDACASWWTQG-----PDATLQIELARDMGYTAARFGHVMFP 438
++ + N++I D +W P+ +++A + G +
Sbjct: 41 VKDAYAWDVDGNRYI----DYVGTWGPAICGHAHPEVIEALKVAMEKGTS-----FGAPC 91
Query: 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498
A + + F ++G+ A L++ + G+
Sbjct: 92 ALENVLAEMVNDAV------PSIEMVRFVNSGTEACMAVLRLMRA-----------YTGR 134
Query: 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
D K++ +G YHG + T P V +
Sbjct: 135 D--------KIIKFEGCYHGHADMFLVKAGSGVATLG-----------LPSSPGVPKKTT 175
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
L+ P + +F E
Sbjct: 176 ANTLTTPYNDLEAV-----------KALFAENPGE------------------------- 199
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
I +I+EP+V G + D F L + ++FDEV TGF +
Sbjct: 200 -IAGVILEPIV-GNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRI-AYGGVQEKF 256
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAK 738
G PD+ GK++ GG+ A + + + + S + L A K
Sbjct: 257 GVTPDLTTLGKIIGGGLPV-GAYGGKREIMQLV---APAGPMYQAGTLSGNPLAMTAGIK 312
Query: 739 SIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA 798
+++ + P T + + L + + + Q G +A
Sbjct: 313 TLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDA 372
Query: 799 GYGSLYAASLL-KKLREDGVYMRPLGNVIYLMC 830
L S + + E G+Y+ P
Sbjct: 373 KKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTS 405
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
{Pseudomonas cepacia [TaxId: 292]}
Length = 431
Score = 77.8 bits (190), Expect = 1e-15
Identities = 54/359 (15%), Positives = 100/359 (27%), Gaps = 16/359 (4%)
Query: 500 TTEKCIELKVLALKGSYHG-DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
+ ++L + G D + A S +G+ + + +
Sbjct: 81 LSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMT 140
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
S K V + + F + + SG
Sbjct: 141 GAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSG 200
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
+ A I EP++ + GG+ + + L ++C+ R + +I DE TG R G
Sbjct: 201 NLAAFIAEPILSS-GGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRD 259
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAK 738
G PDI K L G+ A + + H
Sbjct: 260 GVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFY---TTHVSDPLPAAVGLRVL 316
Query: 739 SIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA 798
+ N++ +R L+ + + V G L +E+
Sbjct: 317 DVVQRDGLVARANVMGDR------LRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTK 370
Query: 799 GYGSLYAASLLKKLREDGVYM-----RPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852
A + ++ G+ M +G V + S + L L Q +E
Sbjct: 371 EPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 429
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 461
Score = 57.7 bits (138), Expect = 4e-09
Identities = 66/485 (13%), Positives = 121/485 (24%), Gaps = 80/485 (16%)
Query: 384 GENFSVYQDQKNKFIGQQFDACASWWT--QG---PDATLQIELARDMGYTAARFGHVMFP 438
+ N+ + D + + G P ++ +++ R + P
Sbjct: 42 SRGNYLVDVDGNRML----DLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILP 97
Query: 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498
+ + E LL V S+ GS + E A K F + F +
Sbjct: 98 PENF--VEKLRESLLS-VAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKE 154
Query: 499 DTTEKCIEL-------KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551
+ I +L+ G++HG T+G + +
Sbjct: 155 ELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFD---------- 204
Query: 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611
+ L P + K + ++ E +
Sbjct: 205 --WPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVK--------------------- 241
Query: 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV--FTGFWRL 669
+ A II + + GG + F R L + + DEV G
Sbjct: 242 --YRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGK 299
Query: 670 GVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAH 729
L D+ + K + T F +
Sbjct: 300 FWAHEHWGLDDPADVMTFSK-----------KMMTGGFFHKEEFRPNAPYRIFNTWLGDP 348
Query: 730 ALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAI 789
+ A ++ ++ + +L L DL Q + + RV GT C+
Sbjct: 349 SKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDL----QARYPQFISRVRGRGTFCSF 404
Query: 790 ELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQ 848
+ L+ R GV + G I L
Sbjct: 405 DTPDES--------IRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSD 456
Query: 849 RLEEF 853
L +F
Sbjct: 457 ILADF 461
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 41.1 bits (95), Expect = 5e-04
Identities = 47/421 (11%), Positives = 88/421 (20%), Gaps = 95/421 (22%)
Query: 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL-KVLALKGSYHGDTLG 522
+ G A +I + + +K EK ++ K++A + T G
Sbjct: 92 TIPTHQGRGAEQIYIPVLIKKR--------------EQEKGLDRSKMVAFSNYFFDTTQG 137
Query: 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCS 582
+ G + Y F N E L I E
Sbjct: 138 HSQ------INGCTVRNVYIKEAFDTGVRYDFKGNFD-----LEGLERGIEEVGPNNV-- 184
Query: 583 RDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLF 642
I+ + + G V
Sbjct: 185 ---------------------------------------PYIVATITSNSAGGQPVSLAN 205
Query: 643 QRILVKECQNRKIPVIFDE------VFTGFWRLGVETTADLLGCVPDIACY--------G 688
+ + + IPV+ D + R + + Y
Sbjct: 206 LKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAK 265
Query: 689 KLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAA-AKSIKWFKDPQ 747
K + L + + +Y G A + +
Sbjct: 266 KDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLD 325
Query: 748 TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAAS 807
I + + L + E+ V G L A
Sbjct: 326 WLAYRIAQVQYLVD-GLEEIGVVCQQAGGHAAFVDAGKLLPH-------IPADQFPAQAL 377
Query: 808 LLKKLREDGVYMRPLGNVI--YLMCGPCSSPEVCSQLLLKLYQR---LEEFDKVEEKLKS 862
+ + G+ +G+ + P L L + + D + E K
Sbjct: 378 ACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKH 437
Query: 863 C 863
Sbjct: 438 V 438
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 35.0 bits (79), Expect = 0.025
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSD 89
+ + +T +GKT+ S L + +A + KP+ +G +
Sbjct: 4 YFVTGTDTEVGKTVASCALLQAA-----KAAGYRTAGYKPVASGSEKTPE 48
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 28.2 bits (63), Expect = 0.65
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 9/51 (17%)
Query: 5 RRHHYPDHHRRILLRLFHHSTFHPQP---------LDLPLSHPTFQIWSAN 46
R H + + RIL F + +P + LS + W +N
Sbjct: 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSN 51
>d1jz8a5 c.1.8.3 (A:334-625) beta-Galactosidase, domain 3
{Escherichia coli [TaxId: 562]}
Length = 292
Score = 30.7 bits (68), Expect = 0.65
Identities = 6/55 (10%), Positives = 11/55 (20%)
Query: 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGST 472
I L + + A R H Y ++ +
Sbjct: 42 DILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIETHGMVPMNRLTDD 96
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 30.9 bits (69), Expect = 0.71
Identities = 35/259 (13%), Positives = 67/259 (25%), Gaps = 22/259 (8%)
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD--EVFTGFWRLGVETTAD 676
A I V G V R + + I + +D + + +
Sbjct: 173 ENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGY 232
Query: 677 LLGCVPDIACY-GKLLTGGVIPLAATLATNAVFDSFVGDSKL-------KALLHGHSYSA 728
+ DI G + N + D ++ + G
Sbjct: 233 ENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYG 292
Query: 729 HALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCA 788
G A +I + Q + E R+ + L + + V+ G
Sbjct: 293 GLAGRDMEAMAIGLREAMQYEYI---EHRVKQVR-YLGDKLREAGVPIVEPTG--GHAVF 346
Query: 789 IELQAAGCNAGYGSLYAASLLKKL-REDGVYMRPLGNVI--YLMCGPCSSPEVCSQLLLK 845
++ + + A SL + E GV G V + + L
Sbjct: 347 LDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLT 406
Query: 846 LYQR---LEEFDKVEEKLK 861
+ +R D V + +
Sbjct: 407 IPRRVYTYAHMDVVADGII 425
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 27.8 bits (62), Expect = 0.80
Identities = 9/53 (16%), Positives = 14/53 (26%), Gaps = 9/53 (16%)
Query: 3 RLRRHHYPDHHRRILLRLFHHSTFHPQP---------LDLPLSHPTFQIWSAN 46
+ +R P H ++ HP P L+ W N
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFIN 55
>d2vzsa5 c.1.8.3 (A:336-674) Exochitosanase CsxA {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 339
Score = 30.3 bits (67), Expect = 0.99
Identities = 6/49 (12%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 409 WTQGPDATL--QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455
+ + + +++ ++G R + P+ ++ A + L + G
Sbjct: 33 FLRWNETAAADKLKYVLNLGLNTVRLEGHIEPDEFFDIADDLGVLTMPG 81
>d1seja2 d.117.1.1 (A:233-521) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, TS domain
{Cryptosporidium hominis [TaxId: 237895]}
Length = 289
Score = 29.6 bits (66), Expect = 1.3
Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 23/140 (16%)
Query: 322 MEWFDESHNVFDSLKNIMLLAYSERIQRLCDMP--KRAGELFW-----WPFTQHKLVPEE 374
D + D L + I+ L + P +R W
Sbjct: 123 TMHDDYTGVGVDQLAKL--------IETLKNNPKDRRHILTAWNPSALSQMALPPCHVLS 174
Query: 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434
V + C + ++YQ + +G F+ + L + LA+ GY
Sbjct: 175 QYYVTNDNC-LSCNLYQRSCDLGLGSPFNIASYAI-------LTMMLAQVCGYEPGELAI 226
Query: 435 VMFPENVYEPALECAELLLQ 454
+ ++YE L + L
Sbjct: 227 FIGDAHIYENHLTQLKEQLS 246
>d1ra6a_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1,
strain Mahoney [TaxId: 12080]}
Length = 461
Score = 28.8 bits (64), Expect = 3.1
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 301 LRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAY 343
+ P L+ P +P ++ + W + N D ++++ LLA+
Sbjct: 380 ADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAW 422
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 28.6 bits (62), Expect = 3.3
Identities = 28/233 (12%), Positives = 55/233 (23%), Gaps = 21/233 (9%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
+LI H G +V + + + I V D +
Sbjct: 130 SLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGY 189
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIK 741
D + + + + K A AAA
Sbjct: 190 ADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARK-----MLGGGMRQAGVLAAAGIIAL 244
Query: 742 WFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYG 801
+ + R + +L ++ +T ++ L
Sbjct: 245 TKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNL--------------- 289
Query: 802 SLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853
+ A ++ LR GV + I L+ S + L + +F
Sbjct: 290 KVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 342
>d1yq2a5 c.1.8.3 (A:313-609) beta-Galactosidase, domain 3
{Arthrobacter sp. c2-2 [TaxId: 192168]}
Length = 297
Score = 28.4 bits (62), Expect = 3.5
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 418 QIELARDMGYTAARFGHVMFPENVYE 443
+ L + A R H + +
Sbjct: 41 DLALMKRFNVNAIRTSHYPPHPRLLD 66
>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
[TaxId: 4682]}
Length = 425
Score = 28.5 bits (63), Expect = 4.3
Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 16/116 (13%)
Query: 373 EEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432
EEA V + C E+ + D G C + +T GPD + + +A
Sbjct: 10 EEAEAVANINCSEHGRAFLDGII-SEGSPKCECNTCYT-GPDC------SEKIQGCSADV 61
Query: 433 GH---VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF 485
+ E + A L+ W +YF + S I L+ ++
Sbjct: 62 ASGDGLFLEEYWKQHKEASAVLVS-----PWHRMSYFFNPVSNFISFELEKTIKEL 112
>d1mvla_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase
(PPC decarboxylase, halotolerance protein Hal3a)
{Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 182
Score = 27.8 bits (61), Expect = 4.5
Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 11/85 (12%)
Query: 263 GISGTISAYESLKL-----RGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDS 317
SG+++A + L +V V L L + +
Sbjct: 7 AASGSVAAIKFGNLCHCFTEWAEVR-AVVTKSSLHFLDKLSLPQEVTLYTDEDEWSSWNK 65
Query: 318 SNDLMEWFDESHNVFDSLKNIMLLA 342
D + H +++++A
Sbjct: 66 IGDPVL-----HIELRRWADVLVIA 85
>d2je8a5 c.1.8.3 (A:331-678) Five-domain beta-mannosidase, domain 3
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 348
Score = 27.7 bits (60), Expect = 7.2
Identities = 9/68 (13%), Positives = 14/68 (20%), Gaps = 2/68 (2%)
Query: 418 QIELARDMGYTAARF--GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475
++ R G Y+ A E L+ Q
Sbjct: 50 LFRDMKEANMNMVRIWGGGTYENNLFYDLADENGILVWQDFMFACTPYPSDPTFLKRVEA 109
Query: 476 IALKMAFR 483
A+ R
Sbjct: 110 EAVYNIRR 117
>d1r5aa2 c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anopheles
dirus b), isozyme 1-5 [TaxId: 123217]}
Length = 85
Score = 25.7 bits (56), Expect = 8.1
Identities = 5/57 (8%), Positives = 21/57 (36%)
Query: 279 YDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSL 335
D+ + + + + ++ +P + L S ++ + ++ ++L
Sbjct: 27 LDLKVLNIMEGEQLKPDFVELNPQHCIPTMDDHGLVLWESRVILSYLVSAYGKDENL 83
>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 122
Score = 26.1 bits (57), Expect = 8.8
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546
+ E V + + V+ LG + +G+ +S +
Sbjct: 52 WKEEPFVFEKILMPELASLRVAVM----EEGNKFLGHRIIPINALNSGYHHLCLHSESNM 107
Query: 547 FLDPPTVFMY 556
L P +F++
Sbjct: 108 PLTMPALFIF 117
>d1xr7a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 16,
HRV-16 [TaxId: 31708]}
Length = 460
Score = 27.3 bits (60), Expect = 9.3
Identities = 5/43 (11%), Positives = 18/43 (41%)
Query: 301 LRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAY 343
++ L+ P P + + + W + + + + ++ L +
Sbjct: 379 QDDKYKFLIHPTFPVEEIYESIRWTKKPSQMQEHVLSLCHLMW 421
>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 173
Score = 26.5 bits (58), Expect = 9.3
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 811 KLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLL 843
G+Y+ GN ++L G + P + +
Sbjct: 40 LFERYGLYLIDNGNELFLWMGGDAVPALVFDVF 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.420
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,311,878
Number of extensions: 158559
Number of successful extensions: 475
Number of sequences better than 10.0: 1
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 31
Length of query: 863
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 770
Effective length of database: 1,130,706
Effective search space: 870643620
Effective search space used: 870643620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.1 bits)