BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002942
(863 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y2L5|TPPC8_HUMAN Trafficking protein particle complex subunit 8 OS=Homo sapiens
GN=TRAPPC8 PE=1 SV=2
Length = 1435
Score = 156 bits (394), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 198/763 (25%), Positives = 326/763 (42%), Gaps = 149/763 (19%)
Query: 12 ATRCGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLEQASYCYLLSKPPMLHKYG 70
A RC L E+LK++ +Y +AA + R+ E+ L SA++LEQA++C++ K PM+ KY
Sbjct: 502 AERCVLLSAELLKSQSKYSEAAALLIRLTSEDSDLRSALLLEQAAHCFINMKSPMVRKYA 561
Query: 71 FHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAV 130
FH++L+G R+ K Q HA+R Y A+ VYKG WS +DH++F IG+ L D AV
Sbjct: 562 FHMILAGHRFSKAGQKKHALRCYCQAMQVYKGKGWSLAEDHINFTIGRQSYTLRQLDNAV 621
Query: 131 A---HMLEKTGKT------------FEVVK-----------PRLPI--INISSLKVIFED 162
+ H+L K V K P+LP+ IN S+ +V F
Sbjct: 622 SAFRHILINESKQSAAQQGAFLREYLYVYKNVSQLSPDGPLPQLPLPYINSSATRVFFGH 681
Query: 163 HRTYASAEA-ANVRESL-----------WRSLEEDMIPSLSTA--RSNWLELQSKLIMKK 208
R A E A SL WR LEE ++ ++ SN+ Q +
Sbjct: 682 DRRPADGEKQAATHVSLDQEYDSESSQQWRELEEQVVSVVNKGVIPSNFHPTQ--YCLNS 739
Query: 209 FEESN---ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQ 265
+ +++ + V EP+ V++ F+NPL++ + ++++SL+ + + D D
Sbjct: 740 YSDNSRFPLAVVEEPITVEVAFRNPLKVLLLLTDLSLLWKFHPK-DFSGKD--------- 789
Query: 266 NDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLS 325
N+E +L+T+ EM + +SE I+ G E+ + +L + P G L I+GV + L
Sbjct: 790 NEEVKQLVTSEPEM---IGAEVISEFLIN--GEESKVARLKLFPHHIGELHILGVVYNLG 844
Query: 326 -----------GSLVGVYNFESNL---VKKK------------IAKGRRKVKSSPSNDLK 359
G+L G + + +L V+ K + + VK P L
Sbjct: 845 TIQGSMTVDGIGALPGCHTGKYSLSMSVRGKQDLEIQGPRLNNTKEEKTSVKYGPDRRLD 904
Query: 360 FIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGN-- 417
I+ + +P LE P G++R +E N S + LK+ P F + G
Sbjct: 905 PIITEEMPLLEVFFIHFPTGLLCGEIRKAYVEFVNVSKCPLTGLKVVSKRPEFFTFGGNT 964
Query: 418 -----------------RDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAV-FSFPEGIS 459
+ +T C +++A G P+ + P+ +
Sbjct: 965 AVLTPLSPSASENCSAYKTVVTDATSVCTALISSASSVDFGIGTGSQPEVIPVPLPDTVL 1024
Query: 460 IQGETPLLWPLWYRAA-VPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSF 518
+ G + L P+W R G ++ YYE I++R+LR + SLNV
Sbjct: 1025 LPGASVQL-PMWLRGPDEEGVHEINFLFYYESVKKQPKIRHRILRHTAIICTSRSLNVRA 1083
Query: 519 QISPWSS------RLQQYLVRMDVVNQTSSE----NFQIHQLSSVGHQWE----ISLLQP 564
+ +S R LV +DV N +SE F I Q+SS W+ ++L +
Sbjct: 1084 TVCRSNSLENEEGRGGNMLVFVDVENTNTSEAGVKEFHIVQVSSSSKHWKLQKSVNLSEN 1143
Query: 565 FDSIFPS--ESLFAGQALSCFFMLKNRGESST-SSDDTSSPSRLLGSD---VSLQGTADT 618
D+ S + F +A+ C + E++T SS+ + + G++ S AD
Sbjct: 1144 KDTKLASREKGKFCFKAIRC-----EKEEAATQSSEKYTFADIIFGNEQIISSASPCADF 1198
Query: 619 LFDISGSPLADFHAH-------------ERLLQRVSQDDTNTV 648
+ S L AH RL+Q+ S+ D N V
Sbjct: 1199 FYRSLSSELKKPQAHLPVHTEKQSTEDAVRLIQKCSEVDLNIV 1241
>sp|Q25132|LHX3_HALRO LIM/homeobox protein Lhx3 OS=Halocynthia roretzi GN=LHX3 PE=2 SV=2
Length = 692
Score = 37.0 bits (84), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 654 SQPSKSDSDSGISDPQHLFSHHACHCSIL---GKTPITWLVDGPRTLHHNFNASFCEVNL 710
S P S + +SD HLFS ++ H S + GK+ ++L PR ++ N N
Sbjct: 159 SSPENMTSFNPMSDSSHLFSDYSKHNSTILANGKSGTSYLTSTPRRIYDNTNMINIPEET 218
Query: 711 KM--TIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVT 768
K T YN ++ + FD+P SSG TSP + + + D K+
Sbjct: 219 KNIPTCYNGNNHVPSESI--FDNPLSSGANRRMTSPGHKIQPSTCSDMLFTLLAKDNKIE 276
Query: 769 SQLP 772
+++P
Sbjct: 277 AEIP 280
>sp|A6V4J2|UVRC_PSEA7 UvrABC system protein C OS=Pseudomonas aeruginosa (strain PA7)
GN=uvrC PE=3 SV=1
Length = 608
Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 44/294 (14%)
Query: 371 GLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQ 430
GL+ P YA D+RH V+ L+ +S+ L + + ++ A L+
Sbjct: 181 GLVGP---EEYAEDVRHSVMFLEGRSNALADELNTGMEQAAMRLDFEKAAELRDQVAILR 237
Query: 431 KMTNAEQSVAGGNFNKMPQAVFSFPEG-----ISIQGETPL----LWPLWYRAAVPGKIS 481
++ + +QS+ GGN + A P G IS++G L +P G++
Sbjct: 238 RVQD-QQSMEGGNGDVDIVAAIVTPGGACVHLISVRGGRVLGSKNFFPQVAIEEEVGEVL 296
Query: 482 LSITIYYEMGDVSSVIKYRLLR--MHYNLEVLPS---------LNVSFQISPWSSRLQQY 530
L+ Y + + L+ MH + VL + L +S+++ +R QQ
Sbjct: 297 LAFLGQYYLSHQERDLPAELIVNVMHEDFPVLVAAIAEARGRQLEISYRVRGTRARWQQ- 355
Query: 531 LVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRG 590
+ V N + ++ V ++E +L + D P Q L CF + + G
Sbjct: 356 ---LAVTNAEQALGARLANRQHVAARFE-ALAEALDLAEPP------QRLECFDISHSSG 405
Query: 591 ESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHA--HERLLQRVSQ 642
E++ +S P L SD ++I G D +A H+ L +R S+
Sbjct: 406 EATVASCVVFGPEGPLKSDYR-------RYNIEGVTAGDDYAAMHQALTRRFSR 452
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3
PE=1 SV=1
Length = 1050
Score = 34.7 bits (78), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 133 MLEKTGKTFEVVKPRLPIINISSLKVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLST 192
LEK P++P I+++S +V+FE +++ + + E + S E +IP LS+
Sbjct: 440 FLEKKIDEHFKTSPKIPGIDLNSTRVLFEK---LMNSQHSMILEQILNSFESCLIPQLSS 496
Query: 193 ARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISL 242
+ + ++ LI+ +F P+ D ++ L IP++++ + L
Sbjct: 497 SPPDVEAMRIYLILPEF----------PLLQDSKYYITLTIPLAMAILRL 536
>sp|Q9I0Q1|UVRC_PSEAE UvrABC system protein C OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=uvrC PE=3
SV=1
Length = 608
Score = 34.3 bits (77), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 44/294 (14%)
Query: 371 GLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQ 430
GL+ P YA D+RH V+ L+ +S+ L + + + ++ A L+
Sbjct: 181 GLVSP---EEYAEDVRHSVMFLEGRSNALADELNVGMEQAAMRLDFEKAAELRDQVAILR 237
Query: 431 KMTNAEQSVAGGNFNKMPQAVFSFPEG-----ISIQGETPL----LWPLWYRAAVPGKIS 481
++ + +QS+ GGN + A P G IS++G L +P G++
Sbjct: 238 RVQD-QQSMEGGNGDVDIVAAIVTPGGACVHLISVRGGRVLGSKNFFPQVAIEEEVGEVL 296
Query: 482 LSITIYYEMGDVSSVIKYRLLR--MHYNLEVLPS---------LNVSFQISPWSSRLQQY 530
L+ Y + + L+ H + VL S L +S+++ +R QQ
Sbjct: 297 LAFLGQYYLSHQERDLPAELIVNVTHEDFPVLVSAIAEARGRELEISYRVRGTRARWQQ- 355
Query: 531 LVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRG 590
+ V N + ++ V ++E +L + D P Q L CF + + G
Sbjct: 356 ---LAVTNAEQALGARLANRQHVAARFE-ALAEALDLAEPP------QRLECFDISHSSG 405
Query: 591 ESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHA--HERLLQRVSQ 642
E++ +S P L SD ++I G D +A H+ L +R S+
Sbjct: 406 EATVASCVVFGPEGPLKSDYR-------RYNIEGVTAGDDYAAMHQALTRRFSR 452
>sp|Q02N77|UVRC_PSEAB UvrABC system protein C OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=uvrC PE=3 SV=1
Length = 608
Score = 34.3 bits (77), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 44/294 (14%)
Query: 371 GLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQ 430
GL+ P YA D+RH V+ L+ +S+ L + + + ++ A L+
Sbjct: 181 GLVSP---EEYAEDVRHSVMFLEGRSNALADELNVGMEQAAMRLDFEKAAELRDQVAILR 237
Query: 431 KMTNAEQSVAGGNFNKMPQAVFSFPEG-----ISIQGETPL----LWPLWYRAAVPGKIS 481
++ + +QS+ GGN + A P G IS++G L +P G++
Sbjct: 238 RVQD-QQSMEGGNGDVDIVAAIVTPGGACVHLISVRGGRVLGSKNFFPQVAIEEEVGEVL 296
Query: 482 LSITIYYEMGDVSSVIKYRLLR--MHYNLEVLPS---------LNVSFQISPWSSRLQQY 530
L+ Y + + L+ H + VL S L +S+++ +R QQ
Sbjct: 297 LAFLGQYYLSHQERDLPAELIVNVTHEDFPVLVSAIAEARGRELEISYRVRGTRARWQQ- 355
Query: 531 LVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRG 590
+ V N + ++ V ++E +L + D P Q L CF + + G
Sbjct: 356 ---LAVTNAEQALGARLANRQHVAARFE-ALAEALDLAEPP------QRLECFDISHSSG 405
Query: 591 ESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHA--HERLLQRVSQ 642
E++ +S P L SD ++I G D +A H+ L +R S+
Sbjct: 406 EATVASCVVFGPEGPLKSDYR-------RYNIEGVTAGDDYAAMHQALTRRFSR 452
>sp|B7V4X6|UVRC_PSEA8 UvrABC system protein C OS=Pseudomonas aeruginosa (strain LESB58)
GN=uvrC PE=3 SV=1
Length = 608
Score = 34.3 bits (77), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 44/294 (14%)
Query: 371 GLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQ 430
GL+ P YA D+RH V+ L+ +S+ L + + + ++ A L+
Sbjct: 181 GLVSP---EEYAEDVRHSVMFLEGRSNALADELNVGMEQAAMRLDFEKAAELRDQVAILR 237
Query: 431 KMTNAEQSVAGGNFNKMPQAVFSFPEG-----ISIQGETPL----LWPLWYRAAVPGKIS 481
++ + +QS+ GGN + A P G IS++G L +P G++
Sbjct: 238 RVQD-QQSMEGGNGDVDIVAAIVTPGGACVHLISVRGGRVLGSKNFFPQVAIEEEVGEVL 296
Query: 482 LSITIYYEMGDVSSVIKYRLLR--MHYNLEVLPS---------LNVSFQISPWSSRLQQY 530
L+ Y + + L+ H + VL S L +S+++ +R QQ
Sbjct: 297 LAFLGQYYLSHQERDLPAELIVNVTHEDFPVLVSAIAEARGRELEISYRVRGTRARWQQ- 355
Query: 531 LVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRG 590
+ V N + ++ V ++E +L + D P Q L CF + + G
Sbjct: 356 ---LAVTNAEQALGARLANRQHVAARFE-ALAEALDLAEPP------QRLECFDISHSSG 405
Query: 591 ESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHA--HERLLQRVSQ 642
E++ +S P L SD ++I G D +A H+ L +R S+
Sbjct: 406 EATVASCVVFGPEGPLKSDYR-------RYNIEGVTAGDDYAAMHQALTRRFSR 452
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 309,762,334
Number of Sequences: 539616
Number of extensions: 12709613
Number of successful extensions: 31382
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 31334
Number of HSP's gapped (non-prelim): 60
length of query: 863
length of database: 191,569,459
effective HSP length: 126
effective length of query: 737
effective length of database: 123,577,843
effective search space: 91076870291
effective search space used: 91076870291
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)