Query 002942
Match_columns 863
No_of_seqs 163 out of 201
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 13:52:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002942.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002942hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1938 Protein with predicted 100.0 1.5E-75 3.2E-80 681.9 5.8 665 5-814 251-960 (960)
2 PF08626 TRAPPC9-Trs120: Trans 100.0 5.1E-25 1.1E-29 279.2 57.9 488 28-590 420-1010(1185)
3 PF12739 TRAPPC-Trs85: ER-Golg 99.9 3.9E-26 8.5E-31 260.5 7.8 105 10-114 297-414 (414)
4 KOG1953 Targeting complex (TRA 99.8 1.8E-16 3.9E-21 185.9 34.9 285 212-542 686-1001(1235)
5 PF07919 Gryzun: Gryzun, putat 99.2 1E-06 2.2E-11 104.8 48.7 504 214-827 22-552 (554)
6 PF06159 DUF974: Protein of un 97.9 0.0018 3.8E-08 69.8 22.1 186 376-591 3-210 (249)
7 PF14938 SNAP: Soluble NSF att 97.3 0.00074 1.6E-08 73.8 9.0 118 18-135 40-180 (282)
8 COG1470 Predicted membrane pro 97.1 0.044 9.6E-07 62.6 20.3 124 291-475 325-453 (513)
9 PF14938 SNAP: Soluble NSF att 96.2 0.012 2.6E-07 64.3 7.5 105 28-135 30-140 (282)
10 PF00927 Transglut_C: Transglu 95.6 0.13 2.9E-06 47.8 10.9 90 214-332 10-101 (107)
11 KOG1586 Protein required for f 95.4 0.051 1.1E-06 57.4 8.0 106 27-135 28-139 (288)
12 PF14874 PapD-like: Flagellar- 94.5 0.34 7.3E-06 44.5 10.1 87 367-491 2-91 (102)
13 PF10633 NPCBM_assoc: NPCBM-as 94.5 0.13 2.8E-06 45.2 6.9 72 382-488 3-77 (78)
14 PF07705 CARDB: CARDB; InterP 94.4 0.23 4.9E-06 44.8 8.7 86 367-490 2-87 (101)
15 KOG2625 Uncharacterized conser 92.7 0.61 1.3E-05 48.7 9.2 315 379-831 10-332 (348)
16 PF00635 Motile_Sperm: MSP (Ma 89.8 1 2.2E-05 41.6 6.9 69 383-490 17-88 (109)
17 PRK15359 type III secretion sy 89.7 2 4.4E-05 42.1 9.3 87 20-135 31-117 (144)
18 KOG1586 Protein required for f 89.7 1.5 3.3E-05 46.7 8.6 89 43-133 88-177 (288)
19 PF11817 Foie-gras_1: Foie gra 87.9 1.8 3.8E-05 46.7 8.0 88 46-135 156-243 (247)
20 TIGR02795 tol_pal_ybgF tol-pal 87.1 7.5 0.00016 35.3 10.8 96 17-135 6-101 (119)
21 PF12895 Apc3: Anaphase-promot 86.9 2.3 5.1E-05 37.3 7.0 80 26-135 2-83 (84)
22 PF13424 TPR_12: Tetratricopep 86.8 1 2.2E-05 38.7 4.5 59 77-135 12-71 (78)
23 TIGR02552 LcrH_SycD type III s 85.4 5.9 0.00013 37.4 9.5 92 15-135 19-110 (135)
24 PF13414 TPR_11: TPR repeat; P 85.1 1.1 2.5E-05 37.4 3.9 57 73-135 6-63 (69)
25 PLN03088 SGT1, suppressor of 85.1 4.5 9.7E-05 46.0 9.8 55 75-135 41-95 (356)
26 PF05753 TRAP_beta: Translocon 84.9 8.2 0.00018 39.8 10.7 96 365-493 19-117 (181)
27 PF13432 TPR_16: Tetratricopep 84.9 1.6 3.4E-05 36.2 4.6 54 76-135 3-56 (65)
28 cd00189 TPR Tetratricopeptide 84.6 7.5 0.00016 32.0 8.8 89 18-135 5-93 (100)
29 PRK11447 cellulose synthase su 82.6 5.3 0.00011 52.5 10.2 55 75-135 466-520 (1157)
30 CHL00033 ycf3 photosystem I as 82.5 9.6 0.00021 37.9 10.0 57 77-133 79-136 (168)
31 PRK02603 photosystem I assembl 82.0 3.8 8.1E-05 41.2 6.8 63 70-135 35-97 (172)
32 PF09295 ChAPs: ChAPs (Chs5p-A 81.9 7.2 0.00016 45.1 9.8 101 21-133 177-291 (395)
33 PF09976 TPR_21: Tetratricopep 81.5 6.2 0.00013 38.4 8.0 96 8-133 43-141 (145)
34 PRK11788 tetratricopeptide rep 80.5 26 0.00056 39.3 13.7 115 15-135 109-239 (389)
35 TIGR02521 type_IV_pilW type IV 80.2 15 0.00032 36.8 10.6 27 14-40 32-58 (234)
36 PRK10370 formate-dependent nit 79.6 13 0.00028 38.6 10.0 63 67-135 105-169 (198)
37 PF13429 TPR_15: Tetratricopep 79.1 4.1 9E-05 44.0 6.4 69 67-135 143-239 (280)
38 PF01345 DUF11: Domain of unkn 77.9 9 0.00019 33.2 7.0 52 364-415 21-72 (76)
39 PRK15179 Vi polysaccharide bio 76.6 16 0.00035 45.4 11.1 114 13-135 86-213 (694)
40 PF14559 TPR_19: Tetratricopep 76.0 6 0.00013 32.8 5.2 48 82-135 3-50 (68)
41 TIGR03302 OM_YfiO outer membra 75.8 31 0.00066 36.0 11.7 53 78-133 174-226 (235)
42 PF14646 MYCBPAP: MYCBP-associ 75.7 18 0.00039 42.2 10.8 83 381-490 244-327 (426)
43 PF10633 NPCBM_assoc: NPCBM-as 75.3 17 0.00038 31.7 8.1 67 216-318 2-72 (78)
44 KOG1840 Kinesin light chain [C 75.1 30 0.00065 41.3 12.4 122 12-135 239-392 (508)
45 COG1361 S-layer domain [Cell e 74.7 1.4E+02 0.003 35.5 18.1 132 375-541 158-295 (500)
46 TIGR02521 type_IV_pilW type IV 73.7 34 0.00074 34.1 11.1 20 19-38 71-90 (234)
47 cd05804 StaR_like StaR_like; a 73.0 16 0.00036 40.4 9.3 61 73-135 151-211 (355)
48 PF13424 TPR_12: Tetratricopep 72.7 12 0.00025 32.0 6.4 69 11-101 3-77 (78)
49 PF03896 TRAP_alpha: Transloco 70.7 68 0.0015 35.6 13.0 97 378-508 93-194 (285)
50 PF13584 BatD: Oxygen toleranc 70.4 2.3E+02 0.0049 33.5 19.5 101 293-399 187-303 (484)
51 PRK11447 cellulose synthase su 70.0 36 0.00078 44.8 12.7 55 75-135 274-328 (1157)
52 TIGR02917 PEP_TPR_lipo putativ 69.8 37 0.00081 41.7 12.3 111 17-133 60-182 (899)
53 PRK02603 photosystem I assembl 68.8 23 0.0005 35.4 8.5 61 73-133 75-136 (172)
54 PF07705 CARDB: CARDB; InterP 68.8 73 0.0016 28.2 11.0 67 213-318 13-80 (101)
55 PF12690 BsuPI: Intracellular 68.1 16 0.00034 32.8 6.2 72 708-822 2-80 (82)
56 TIGR00990 3a0801s09 mitochondr 67.7 23 0.00049 43.1 9.6 113 17-135 437-567 (615)
57 PRK11788 tetratricopeptide rep 67.5 29 0.00062 38.9 9.8 114 15-135 37-166 (389)
58 PF09986 DUF2225: Uncharacteri 67.2 19 0.00042 38.0 7.7 84 51-135 100-190 (214)
59 KOG1155 Anaphase-promoting com 66.8 7.7 0.00017 45.1 4.8 56 74-135 436-491 (559)
60 PRK12370 invasion protein regu 66.6 37 0.0008 40.9 11.0 48 83-135 419-466 (553)
61 PF13584 BatD: Oxygen toleranc 66.2 1.1E+02 0.0024 36.1 14.7 87 299-398 71-157 (484)
62 KOG0439 VAMP-associated protei 66.1 22 0.00048 37.3 8.0 70 384-492 25-98 (218)
63 PRK11189 lipoprotein NlpI; Pro 65.7 41 0.00088 37.0 10.3 55 75-135 103-157 (296)
64 PF07719 TPR_2: Tetratricopept 65.1 10 0.00023 26.7 3.7 24 112-135 3-26 (34)
65 PRK10803 tol-pal system protei 64.7 54 0.0012 35.8 10.8 97 14-135 143-242 (263)
66 PRK15174 Vi polysaccharide exp 64.6 51 0.0011 40.7 11.9 53 77-135 291-343 (656)
67 KOG1155 Anaphase-promoting com 63.9 22 0.00047 41.6 7.6 69 67-135 361-457 (559)
68 TIGR00990 3a0801s09 mitochondr 62.9 42 0.00092 40.8 10.7 113 14-135 332-458 (615)
69 smart00809 Alpha_adaptinC2 Ada 61.2 80 0.0017 28.7 9.8 73 383-490 17-89 (104)
70 PF13371 TPR_9: Tetratricopept 60.8 18 0.00039 30.3 5.0 52 78-135 3-54 (73)
71 cd00189 TPR Tetratricopeptide 60.8 15 0.00032 30.2 4.5 53 77-135 7-59 (100)
72 PF12742 Gryzun-like: Gryzun, 60.7 19 0.00042 30.1 4.8 42 785-826 15-56 (57)
73 TIGR01451 B_ant_repeat conserv 60.2 20 0.00042 29.3 4.9 39 377-415 5-43 (53)
74 CHL00033 ycf3 photosystem I as 59.9 22 0.00049 35.3 6.4 56 77-135 42-97 (168)
75 PF12584 TRAPPC10: Trafficking 59.5 50 0.0011 32.7 8.6 35 292-326 80-114 (147)
76 TIGR02917 PEP_TPR_lipo putativ 59.4 59 0.0013 39.9 11.3 111 15-135 738-862 (899)
77 KOG2076 RNA polymerase III tra 59.1 28 0.0006 43.6 7.9 84 19-133 420-506 (895)
78 PF12690 BsuPI: Intracellular 58.3 57 0.0012 29.2 7.9 71 221-318 2-81 (82)
79 PRK15174 Vi polysaccharide exp 57.2 65 0.0014 39.8 10.9 49 74-128 216-264 (656)
80 PF11817 Foie-gras_1: Foie gra 57.0 21 0.00046 38.3 6.0 52 84-135 152-203 (247)
81 PF13181 TPR_8: Tetratricopept 56.9 19 0.00042 25.5 3.9 25 111-135 2-26 (34)
82 TIGR02795 tol_pal_ybgF tol-pal 56.7 31 0.00067 31.1 6.3 58 75-135 7-64 (119)
83 PRK09782 bacteriophage N4 rece 56.1 52 0.0011 42.6 10.1 107 20-135 583-702 (987)
84 KOG1173 Anaphase-promoting com 55.6 27 0.00058 41.7 6.7 66 64-135 449-514 (611)
85 TIGR02552 LcrH_SycD type III s 54.9 24 0.00051 33.2 5.3 60 70-135 17-76 (135)
86 cd05804 StaR_like StaR_like; a 54.0 1.1E+02 0.0024 33.7 11.4 55 75-135 119-173 (355)
87 KOG4386 Uncharacterized conser 53.6 45 0.00097 39.5 7.9 117 648-831 660-777 (809)
88 PF12735 Trs65: TRAPP traffick 52.9 1.9E+02 0.0041 32.4 12.7 127 686-828 157-288 (306)
89 TIGR03302 OM_YfiO outer membra 52.8 52 0.0011 34.2 8.0 68 65-135 28-95 (235)
90 KOG1840 Kinesin light chain [C 52.5 56 0.0012 39.1 8.9 104 13-135 199-308 (508)
91 COG3063 PilF Tfp pilus assembl 52.4 26 0.00056 37.6 5.4 60 69-135 69-128 (250)
92 PF07719 TPR_2: Tetratricopept 52.1 15 0.00033 25.8 2.7 29 74-102 5-33 (34)
93 PF09478 CBM49: Carbohydrate b 51.3 44 0.00094 29.6 6.0 25 384-408 17-41 (80)
94 PRK13202 ureB urease subunit b 50.7 40 0.00086 31.6 5.7 73 375-472 10-84 (104)
95 KOG3785 Uncharacterized conser 50.6 31 0.00068 39.0 5.9 79 19-102 399-481 (557)
96 PF06030 DUF916: Bacterial pro 50.5 46 0.00099 32.1 6.4 78 707-816 28-105 (121)
97 PRK11189 lipoprotein NlpI; Pro 50.3 33 0.00072 37.7 6.3 62 68-135 62-123 (296)
98 PLN03098 LPA1 LOW PSII ACCUMUL 50.3 23 0.0005 41.4 5.1 55 77-135 82-137 (453)
99 PRK12370 invasion protein regu 48.9 71 0.0015 38.5 9.3 53 77-135 345-397 (553)
100 KOG1585 Protein required for f 48.7 98 0.0021 33.7 9.0 86 47-135 90-175 (308)
101 KOG1125 TPR repeat-containing 46.8 21 0.00045 42.7 4.0 71 64-135 425-523 (579)
102 PF04212 MIT: MIT (microtubule 46.1 18 0.0004 30.8 2.7 33 69-101 4-36 (69)
103 PF13176 TPR_7: Tetratricopept 46.1 14 0.00031 27.3 1.7 26 76-101 5-30 (36)
104 COG5010 TadD Flp pilus assembl 45.7 1.9E+02 0.004 31.6 10.7 53 77-135 141-193 (257)
105 cd02683 MIT_1 MIT: domain cont 45.2 18 0.00038 32.1 2.5 32 70-101 6-37 (77)
106 PF08626 TRAPPC9-Trs120: Trans 44.9 5.1E+02 0.011 34.6 16.8 33 782-814 1152-1185(1185)
107 PF12688 TPR_5: Tetratrico pep 44.5 2.9E+02 0.0064 26.5 11.3 96 14-135 2-100 (120)
108 smart00769 WHy Water Stress an 44.3 74 0.0016 29.1 6.7 29 218-246 14-42 (100)
109 PF00515 TPR_1: Tetratricopept 44.3 16 0.00034 26.1 1.8 25 76-100 7-31 (34)
110 PRK15363 pathogenicity island 44.3 1.8E+02 0.0039 29.5 9.7 87 20-135 42-128 (157)
111 PF07919 Gryzun: Gryzun, putat 44.1 78 0.0017 37.9 8.6 70 214-320 480-550 (554)
112 COG1470 Predicted membrane pro 43.8 6.3E+02 0.014 30.1 30.3 48 291-339 37-88 (513)
113 KOG4626 O-linked N-acetylgluco 43.7 1.3E+02 0.0027 36.9 9.7 21 114-134 358-378 (966)
114 PF00515 TPR_1: Tetratricopept 43.6 39 0.00084 24.0 3.7 24 112-135 3-26 (34)
115 PRK10049 pgaA outer membrane p 43.4 1.4E+02 0.0029 37.7 10.9 110 15-134 51-174 (765)
116 smart00745 MIT Microtubule Int 43.0 24 0.00052 30.7 3.0 36 67-102 5-40 (77)
117 PRK09782 bacteriophage N4 rece 42.6 1.6E+02 0.0034 38.5 11.3 47 82-135 588-634 (987)
118 PRK15363 pathogenicity island 42.2 65 0.0014 32.6 6.3 65 14-101 70-134 (157)
119 PF07721 TPR_4: Tetratricopept 41.7 41 0.00088 23.0 3.4 23 112-134 3-25 (26)
120 PF14874 PapD-like: Flagellar- 41.1 1.2E+02 0.0026 27.4 7.5 69 211-316 12-81 (102)
121 PF05506 DUF756: Domain of unk 40.3 98 0.0021 27.7 6.7 21 709-729 21-41 (89)
122 KOG2076 RNA polymerase III tra 39.5 1.6E+02 0.0036 37.1 10.2 114 11-135 137-266 (895)
123 PF10300 DUF3808: Protein of u 38.9 39 0.00085 40.0 4.9 66 68-135 265-330 (468)
124 cd02679 MIT_spastin MIT: domai 38.4 32 0.0007 30.7 3.1 35 67-101 5-39 (79)
125 PF14796 AP3B1_C: Clathrin-ada 38.4 97 0.0021 31.0 6.7 31 379-409 80-110 (145)
126 KOG1129 TPR repeat-containing 37.9 74 0.0016 35.9 6.3 87 20-135 297-383 (478)
127 cd02678 MIT_VPS4 MIT: domain c 37.7 31 0.00068 30.1 2.9 34 68-101 4-37 (75)
128 PLN03088 SGT1, suppressor of 37.7 66 0.0014 36.5 6.3 57 73-135 5-61 (356)
129 PF11614 FixG_C: IG-like fold 37.6 1.4E+02 0.0029 28.1 7.5 55 709-818 34-88 (118)
130 KOG1173 Anaphase-promoting com 37.6 1.2E+02 0.0027 36.4 8.4 81 26-135 325-405 (611)
131 PF13598 DUF4139: Domain of un 37.0 2.6E+02 0.0055 31.0 10.8 77 704-817 240-316 (317)
132 PF13414 TPR_11: TPR repeat; P 36.6 1.2E+02 0.0026 24.9 6.3 61 16-99 6-67 (69)
133 KOG4626 O-linked N-acetylgluco 36.6 61 0.0013 39.3 5.8 113 19-135 122-277 (966)
134 PF13374 TPR_10: Tetratricopep 36.6 24 0.00053 25.8 1.8 29 75-103 7-35 (42)
135 TIGR03769 P_ac_wall_RPT actino 36.6 18 0.0004 28.1 1.1 21 810-831 5-25 (41)
136 PF06030 DUF916: Bacterial pro 36.2 4E+02 0.0086 25.6 10.4 84 215-312 23-106 (121)
137 PTZ00128 cytochrome c oxidase 35.6 86 0.0019 33.7 6.2 40 362-404 117-158 (232)
138 COG3175 COX11 Cytochrome oxida 35.6 1.6E+02 0.0034 30.5 7.7 65 379-473 88-152 (195)
139 TIGR00192 urease_beta urease, 35.4 1E+02 0.0022 28.9 5.8 72 376-473 11-84 (101)
140 cd00407 Urease_beta Urease bet 35.3 97 0.0021 29.0 5.7 70 377-472 12-83 (101)
141 PRK10049 pgaA outer membrane p 35.2 1.8E+02 0.0039 36.6 10.1 55 75-135 364-418 (765)
142 PF00699 Urease_beta: Urease b 34.9 87 0.0019 29.2 5.3 70 377-472 11-82 (100)
143 cd02656 MIT MIT: domain contai 34.7 35 0.00075 29.6 2.7 35 68-102 4-38 (75)
144 KOG3865 Arrestin [Signal trans 34.2 1.6E+02 0.0035 32.9 8.1 116 292-417 114-244 (402)
145 TIGR03079 CH4_NH3mon_ox_B meth 33.7 1.3E+02 0.0029 34.2 7.6 76 382-475 280-355 (399)
146 PF04744 Monooxygenase_B: Mono 33.4 1.2E+02 0.0027 34.6 7.2 87 369-474 249-335 (381)
147 PF13428 TPR_14: Tetratricopep 33.0 65 0.0014 24.7 3.7 24 112-135 3-26 (44)
148 PRK05089 cytochrome C oxidase 32.5 76 0.0016 33.0 5.1 27 378-404 88-114 (188)
149 cd02684 MIT_2 MIT: domain cont 32.4 38 0.00082 29.8 2.5 32 70-101 6-37 (75)
150 PF03168 LEA_2: Late embryogen 32.3 2.8E+02 0.0061 24.4 8.5 52 224-308 1-52 (101)
151 PF10440 WIYLD: Ubiquitin-bind 31.9 58 0.0013 28.1 3.4 45 71-116 9-54 (65)
152 PRK15331 chaperone protein Sic 31.8 31 0.00067 35.1 2.1 23 76-98 111-133 (165)
153 PF00630 Filamin: Filamin/ABP2 31.8 2.6E+02 0.0056 25.0 8.1 33 215-247 17-49 (101)
154 PF12735 Trs65: TRAPP traffick 31.4 3.1E+02 0.0067 30.7 10.2 115 368-485 157-285 (306)
155 PF13181 TPR_8: Tetratricopept 31.2 43 0.00093 23.6 2.3 29 73-101 4-32 (34)
156 PF03704 BTAD: Bacterial trans 31.1 1.4E+02 0.003 28.7 6.6 62 74-135 10-87 (146)
157 PF11614 FixG_C: IG-like fold 31.1 2.5E+02 0.0054 26.3 8.2 72 380-488 26-102 (118)
158 PLN03098 LPA1 LOW PSII ACCUMUL 30.8 1.3E+02 0.0029 35.4 7.2 63 16-100 78-142 (453)
159 PF02883 Alpha_adaptinC2: Adap 30.5 3.2E+02 0.007 25.3 8.8 76 382-492 22-102 (115)
160 PF10602 RPN7: 26S proteasome 30.5 71 0.0015 32.7 4.6 56 77-135 43-98 (177)
161 PF05753 TRAP_beta: Translocon 30.4 3E+02 0.0064 28.5 9.0 83 211-324 30-112 (181)
162 PF12895 Apc3: Anaphase-promot 28.8 99 0.0021 26.8 4.6 46 84-133 3-48 (84)
163 PF13174 TPR_6: Tetratricopept 28.4 70 0.0015 22.1 3.0 23 113-135 3-25 (33)
164 PF13431 TPR_17: Tetratricopep 27.8 60 0.0013 23.8 2.6 33 92-130 1-33 (34)
165 PF13432 TPR_16: Tetratricopep 27.6 3E+02 0.0064 22.3 7.1 59 19-100 3-61 (65)
166 PRK13203 ureB urease subunit b 26.8 1.6E+02 0.0035 27.6 5.6 71 377-473 12-84 (102)
167 smart00028 TPR Tetratricopepti 26.3 97 0.0021 19.7 3.4 24 112-135 3-26 (34)
168 PF13176 TPR_7: Tetratricopept 26.2 98 0.0021 22.7 3.5 22 114-135 3-24 (36)
169 COG3118 Thioredoxin domain-con 26.1 2.2E+02 0.0048 31.8 7.6 24 112-135 238-261 (304)
170 PRK04841 transcriptional regul 25.8 3.7E+02 0.0079 34.1 10.8 58 77-135 580-637 (903)
171 COG4783 Putative Zn-dependent 25.5 1.4E+02 0.0031 35.2 6.3 62 68-135 338-399 (484)
172 PF13473 Cupredoxin_1: Cupredo 25.3 2E+02 0.0043 26.4 6.2 24 798-823 68-91 (104)
173 cd02681 MIT_calpain7_1 MIT: do 25.2 65 0.0014 28.6 2.7 33 70-102 6-38 (76)
174 PRK15359 type III secretion sy 25.1 1.6E+02 0.0034 28.7 5.8 61 17-100 62-122 (144)
175 PF06280 DUF1034: Fn3-like dom 24.9 1.3E+02 0.0028 28.0 4.9 23 289-311 60-82 (112)
176 PRK14574 hmsH outer membrane p 24.9 3.7E+02 0.0081 34.3 10.3 115 14-135 35-161 (822)
177 TIGR00540 hemY_coli hemY prote 24.9 4.1E+02 0.0088 30.6 10.0 113 15-135 86-212 (409)
178 KOG2002 TPR-containing nuclear 24.9 3.1E+02 0.0067 35.2 9.2 106 45-162 252-357 (1018)
179 KOG1126 DNA-binding cell divis 24.3 72 0.0016 38.8 3.7 62 74-135 527-616 (638)
180 PRK13204 ureB urease subunit b 24.3 1.9E+02 0.0042 29.0 6.0 73 375-473 33-107 (159)
181 PRK04841 transcriptional regul 23.9 4.5E+02 0.0098 33.3 11.1 62 74-135 695-756 (903)
182 KOG1130 Predicted G-alpha GTPa 23.5 1E+02 0.0022 35.8 4.4 62 68-131 15-76 (639)
183 PRK10747 putative protoheme IX 23.5 3.7E+02 0.008 30.9 9.3 110 16-133 87-210 (398)
184 PRK09918 putative fimbrial cha 23.4 9.2E+02 0.02 25.7 12.4 100 379-513 33-136 (230)
185 PF04442 CtaG_Cox11: Cytochrom 23.3 4E+02 0.0087 26.9 8.2 83 358-473 42-126 (152)
186 KOG3620 Uncharacterized conser 23.3 1.8E+02 0.0039 38.0 6.9 103 209-314 690-801 (1626)
187 PRK13198 ureB urease subunit b 23.2 2.1E+02 0.0046 28.8 6.0 75 373-473 36-112 (158)
188 PF09976 TPR_21: Tetratricopep 22.5 1.9E+02 0.0042 27.9 5.9 61 70-133 48-108 (145)
189 PF06280 DUF1034: Fn3-like dom 22.5 1.9E+02 0.0042 26.9 5.6 27 790-816 56-82 (112)
190 PRK13205 ureB urease subunit b 22.3 2.1E+02 0.0046 28.7 5.8 70 377-472 12-83 (162)
191 PF00345 PapD_N: Pili and flag 22.1 6.5E+02 0.014 23.5 11.4 61 451-512 51-118 (122)
192 KOG1126 DNA-binding cell divis 22.0 77 0.0017 38.6 3.3 73 51-133 437-512 (638)
193 PF06069 PerC: PerC transcript 21.8 2.7E+02 0.0059 25.6 6.1 56 19-74 6-63 (90)
194 PF13428 TPR_14: Tetratricopep 21.2 80 0.0017 24.1 2.3 27 76-102 7-33 (44)
195 PRK15308 putative fimbrial pro 21.2 1.1E+03 0.023 25.6 15.6 37 450-486 76-112 (234)
196 PF04425 Bul1_N: Bul1 N termin 21.0 5E+02 0.011 30.7 9.6 119 355-475 133-271 (438)
197 PRK13201 ureB urease subunit b 20.6 2.5E+02 0.0054 27.6 5.8 71 377-473 12-84 (136)
198 KOG4642 Chaperone-dependent E3 20.5 1.5E+02 0.0032 32.3 4.7 60 77-136 17-104 (284)
199 PF13371 TPR_9: Tetratricopept 20.1 2.4E+02 0.0051 23.3 5.2 58 21-101 3-60 (73)
No 1
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.5e-75 Score=681.89 Aligned_cols=665 Identities=25% Similarity=0.284 Sum_probs=480.2
Q ss_pred CcchhhHHHHHHHHHHHHHHhccchHHHHHHHHhHhCcch-hhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcC
Q 002942 5 GSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKC 83 (863)
Q Consensus 5 ~~~~~~~A~R~all~~E~lk~~~~~~eAa~~Lir~tsed~-L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyska 83 (863)
+.+ +++|+||+++++||++.+|+|.|||+.|+|+++||+ |++||++||||+||..++|||.|||+||+||||+||++|
T Consensus 251 ~k~-~~~A~rc~l~~aei~k~~~lh~eaa~~~~r~~see~dl~~allleqaal~f~~tkp~m~~ktffHpVLal~r~s~a 329 (960)
T KOG1938|consen 251 LKN-YQDANRCVLNSAEILKFLGLHKEAAEALARETSEEGDLLSALLLEQAALCFGSTKPPMPRKTFFHPVLALIRFSSA 329 (960)
T ss_pred Hhh-ccchhhhccCchHHHHHHHHHHHHHHHHHHhhCcCchhhhHHHHHHHHHHhhcCCCCccchhhcceeehhhhcccC
Confidence 444 789999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHH---HHHHH----------------------hcC
Q 002942 84 DQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAV---AHMLE----------------------KTG 138 (863)
Q Consensus 84 gqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av---~h~l~----------------------~~~ 138 (863)
||++||+|||++|+++|+.++|+.++||++|++|+ .+.+.+.|+|. +|++. ...
T Consensus 330 nqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~-~y~l~~~D~a~~~f~~~i~~~~kqS~~~q~~FLRl~~~~~s~~~ 408 (960)
T KOG1938|consen 330 NQPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILH-VYLLCQEDDADEEFSKLIADCMKQSKGLQTEFLRLYSNKDSFIY 408 (960)
T ss_pred CChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHH-hhhhhcchhHHHHHHHHHhhhhhcChHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999 66666666653 44333 123
Q ss_pred CCCccCCCc-cceEecCccEEEecCC--cccccccccch----hHHHHHHHHHhhccccccccchhhhhhhhhhh-cccc
Q 002942 139 KTFEVVKPR-LPIINISSLKVIFEDH--RTYASAEAANV----RESLWRSLEEDMIPSLSTARSNWLELQSKLIM-KKFE 210 (863)
Q Consensus 139 ~~~~~~~Lp-LP~i~~~~~~V~~~~~--~~~~~~~~~~~----~e~~W~~LEe~lv~s~~~~~~~w~~~~~~~~~-~~~~ 210 (863)
+..++++|+ +|.++++.++|++++. +++++...+.. .+++|..||++.+...+.|..+|...+.+... .+..
T Consensus 409 ~~t~v~~l~~lp~l~~e~~~vi~~~~~~~t~~e~~~at~~~~~sd~~w~~lEr~~s~~~~~~~~p~~~~ql~~~~~~~~~ 488 (960)
T KOG1938|consen 409 DHTPVVQLPQLPMLSMEERLVILSEPTRSTDAEALPATHQYLVSDNIWPSLERKSSHILFAGSQPFRPSQLLLAEFSDKF 488 (960)
T ss_pred ccCCccccCCcchhhhhHHHHHhcCCCCCcchhhhhhhhhhccccccchhHHHHHHHHHhcccCCCcchhcccchhcccc
Confidence 344788899 9999999999999994 55555443333 66699999999988888887777655543322 2223
Q ss_pred CCceeecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeee
Q 002942 211 ESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSE 290 (863)
Q Consensus 211 ~~~~~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 290 (863)
+.+++|+||++++.|+++|||++++.++++.|+|++... +....++..+... ..|.-+ -....
T Consensus 489 ~~~v~v~Ge~~~l~v~~rnpl~~~~alT~~~ll~kl~~~-~~s~~~Na~s~~~-------~~Pe~~---------~~s~~ 551 (960)
T KOG1938|consen 489 KNPVPVAGEPIKLSVTLRNPLKISIALTNSSLLWKLHLD-NLSGSSNAYSHSQ-------SSPELI---------DDSAF 551 (960)
T ss_pred ccccccCCcceeeEEeecCccceeccccchhhhhhcccc-ccccccccccccc-------cChhhh---------hhhhH
Confidence 488999999999999999999999999999999999863 2222222221100 112100 00112
Q ss_pred eeEEECCCceEEEEEEEEeCceeEEEEEEEEEEe------ccceeeEEEeecchhhhhhccccc-cccCCCCCceEEEEe
Q 002942 291 VDISLGGAETILVQLMVTPKVEGILKIVGVRWRL------SGSLVGVYNFESNLVKKKIAKGRR-KVKSSPSNDLKFIVI 363 (863)
Q Consensus 291 ~~i~L~p~etk~V~L~v~P~~~G~L~I~Gv~~~L------~g~v~g~~~F~i~g~rl~~tK~kr-~~~~~pd~~L~~~V~ 363 (863)
..+.+.+.|.+++.|+.+|+..|.|+|.|..|+. .+.+.|...|+++|+|++.+++++ ..++.+|.||.+.+.
T Consensus 552 ~~~~~~~~e~~t~~L~dfp~~~g~lkii~~v~~~~~~~vd~as~yg~~~le~qgirl~~~~~~~~s~~~t~d~RL~~~~~ 631 (960)
T KOG1938|consen 552 PELLKSGEEDFTFMLRDFPRAIGILKIIRNVVNPLIEDVDAASVYGACSLEIQGIRLNNTKLDVTSSKLTNDTRLNILAS 631 (960)
T ss_pred HHHHhcchhceeeeeeeccccceEEeeeeccccchhcccchhhhhcccchhhhhcchhhhcccccccccChHHHHHHHHH
Confidence 4688999999999999999999999999999999 567889999999999999999766 789999999999999
Q ss_pred cCCCeEEEEEecCCccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCC
Q 002942 364 KSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGN 443 (863)
Q Consensus 364 ~~~P~L~v~~~~~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~ 443 (863)
+.+|.|+++|+++|..+||||+|++.|+++|.|.+|+.+|++++++|+|-...+ ..+.+.... ..++.. .
T Consensus 632 e~lp~levs~~s~P~~lyagq~r~~~le~~nls~~P~~~v~~a~s~~~~~~l~n------~s~~~~~~~-~a~i~~---~ 701 (960)
T KOG1938|consen 632 EMLPLLEVSFTSFPQWLYAGQAREVLLELRNLSPCPAISVDLAASWPYFAVLEN------ESHRKGKMN-AANISQ---Q 701 (960)
T ss_pred hhhhhhheeeecCcchHHHHHHHHHHHHhhhcCCCchhhHHHHhcChhhhhccc------ccccccccC-Hhhhhh---h
Confidence 999999999999999999999999999999999999999999999997711110 112222111 011110 0
Q ss_pred CCCCCcceeecCCCcccCCCCeEEEEEEEEecCCceeEEEEEEEEeeCCCCCcceEEEEEEEEEEEEeceeeEEEEEEee
Q 002942 444 FNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPW 523 (863)
Q Consensus 444 ~~~~~~~v~~~P~~~~L~pGes~~lPlwlra~~~G~~~l~lLfyYe~~~~~~~~~~R~~R~~~~i~V~pSL~vs~~~~~s 523 (863)
..-+....+..+++..|.+|+++++|+|+|++.++. = ..+| ++++
T Consensus 702 ~t~r~~~~s~~~~d~~l~g~r~rr~alW~r~~a~~~-----~-----------~w~r-------------------~~~~ 746 (960)
T KOG1938|consen 702 ETTRFESGSGSDEDIVLDGGRRRRAALWFRLSAEAS-----K-----------PWLR-------------------QRQW 746 (960)
T ss_pred hhhhhccccCCCcccccCCCceeeeeeeEecccccc-----c-----------chHH-------------------hhhh
Confidence 011111223345688999999999999999996550 1 1122 1111
Q ss_pred ccCCceEEEEEEEEeCCCCCceEEEEEEeeecceEEeecCCCcccCCccccccccEEEEEEEEEecCCCCCCCCCCCCCC
Q 002942 524 SSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESSTSSDDTSSPS 603 (863)
Q Consensus 524 ~s~~~~~ll~v~V~N~~~~~~~~l~Qvs~vS~~W~l~~l~~~~~~~~~~~l~p~q~~~~~f~i~~~~~~~~~~~~~~~~~ 603 (863)
+. .+...|.....-..+++++.+.-.|.....+.-.+..++.....++.++.+++.+.+...++.+++.
T Consensus 747 r~-------~~~~~n~a~~~y~~i~~~~~s~~~l~~~~~~~e~~dvpsa~~~~~~~ls~~~~~~~~~~~~~e~e~~---- 815 (960)
T KOG1938|consen 747 RR-------ASWCLNTAKSTYSKIHWLSLSECILSKSLNLSENTDVPSAFTPSGKNLSRTSVSFIGRAVEIESEQP---- 815 (960)
T ss_pred hh-------hhhhhhccccceeeeeeeehhhhhhhhhccchhhccCccccCccccccceeeeccccccccccccCC----
Confidence 11 3334444444557778888887778887776555556667778899999999888888766543332
Q ss_pred ccccCceeecCCCccccccCCCcchhhhhhhhhh----cccccCCCCcccEEEEecccccCCCCCCCCCccccceeeecc
Q 002942 604 RLLGSDVSLQGTADTLFDISGSPLADFHAHERLL----QRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHC 679 (863)
Q Consensus 604 ~~~~~d~~l~~~~~~~~~~s~~P~~~f~~~~~~~----~~~~~~~~~~~~ii~~w~a~~~~~~~~~~~~~~~g~~h~~~~ 679 (863)
.+.- ++..+..++.+||..-.-. +.-....+++ |++.|+|++++|+++. ..+|
T Consensus 816 --i~~~---------~~~~s~~~~~~~~~~~st~~~~~~~~~~~~~~~--i~~~w~a~vv~~eg~~---~~~g------- 872 (960)
T KOG1938|consen 816 --IVAR---------LVPLSQGETIKFFWLTSTTEVTPPAEIQSTMDT--IVILWKANVVNDEGVT---RFIG------- 872 (960)
T ss_pred --cccc---------eeeccCCcchhhhhhccccccCCChhhccChhh--HHHhccccccccccee---eecC-------
Confidence 1121 2333444444444331100 0001222322 8899999999998632 2333
Q ss_pred cccCCCcEEEEEecCceeeccCCCCceeEeEEEEEEeCCCccEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccc
Q 002942 680 SILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDV 759 (863)
Q Consensus 680 ~~~~~~~i~~~l~~p~~i~h~F~~~~c~vpv~l~l~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 759 (863)
++-++.|.|....|.+..++.+.|.++..-+ +.+.-.. -+.+-...+++-||.+|
T Consensus 873 -------------~~~~l~~~f~~~~~~~~~~~s~~~~~~~i~~----t~~~~~~--------~p~t~~~~n~~~~~~~v 927 (960)
T KOG1938|consen 873 -------------PFVKLKKLFKTDSCLSSLRISCETTSKEISH----TADHLCE--------LPITLLISNNDLAWRPV 927 (960)
T ss_pred -------------CcceehhhccCCcccccchhhhhhhhhhcch----hhhhhhc--------ccchhhhcCCccccccc
Confidence 4455666666666666666666666653221 2211111 01222344556666655
Q ss_pred cccccceecccCCccccccCCccCccCceEEeccccceEEeCCCceeEEEeEEEE
Q 002942 760 PVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCL 814 (863)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~f~W~g~~~~~~~l~p~~~~~~~L~~~~ 814 (863)
+....- . .|.|+++||+|++++|.++++|+|||
T Consensus 928 ~~~~~~--------------------~--~w~~~~~~k~q~~~~~~~~~~m~~~~ 960 (960)
T KOG1938|consen 928 SVSIEE--------------------S--SWIGRPVYKQQIGILEEASLEMKWKI 960 (960)
T ss_pred chhhhh--------------------h--cccCCcceeeeecccccceeeeEecC
Confidence 433221 0 29999999999999999999999986
No 2
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=99.96 E-value=5.1e-25 Score=279.22 Aligned_cols=488 Identities=17% Similarity=0.131 Sum_probs=291.2
Q ss_pred chHHHHHHHHhHhC-----cch-hhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhc-CCCcHHHHHH-HHHHHhh
Q 002942 28 QYKDAATVYFRICG-----EEP-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKK-CDQINHAIRT-YRSAVSV 99 (863)
Q Consensus 28 ~~~eAa~~Lir~ts-----ed~-L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRysk-agqr~hAlRC-Y~~A~~v 99 (863)
.-.|++..|.|+-. .+. =+.-++...|+. +..=.+.||.||-+=++...+-. ..+...++|. .......
T Consensus 420 ~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~v---y~~lG~~RK~AFvlR~l~~~~~~~l~~~~~s~~~lL~~~~~~ 496 (1185)
T PF08626_consen 420 SRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASV---YGSLGFHRKKAFVLRELAVQLVPGLIHWHQSYRSLLEELCKG 496 (1185)
T ss_pred CHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHH---HHhcchhHHHHHHHHHHHHHhccccCCcchHHHHHHHHHhcc
Confidence 45566666666442 111 123333333333 34557899999998777777643 2222233332 2334445
Q ss_pred hcC---------------CC-ccchhhhHHHHHHHHHHHhCCHHHHHHHHH---H-------------------hcCC--
Q 002942 100 YKG---------------ST-WSHIKDHVHFHIGQWYAVLGMHDIAVAHML---E-------------------KTGK-- 139 (863)
Q Consensus 100 Y~~---------------~~-W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l---~-------------------~~~~-- 139 (863)
|.= .+ |..+.=+|...+-..+..++|+..+++|.. + +...
T Consensus 497 Ygi~~~~~~~~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~~~~LL~~~~~~Ls~~EQ~~L~~~l~~~~~~~ 576 (1185)
T PF08626_consen 497 YGISLDPESSSEDSSKGSQSNWPSLQIDVLKECINIAEALGDFAGVLRFSSLLLRTYSPLLSPDEQIRLANNLQRTSAAA 576 (1185)
T ss_pred CcccCCccccccccccccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhhh
Confidence 542 12 888888888888888999999999987643 2 1110
Q ss_pred CCccCCCccceEecCccEEE-ecCCcccccccccchhHHHHH--HHHHhhc-cccccccchhhhhhhhhh--hccccCCc
Q 002942 140 TFEVVKPRLPIINISSLKVI-FEDHRTYASAEAANVRESLWR--SLEEDMI-PSLSTARSNWLELQSKLI--MKKFEESN 213 (863)
Q Consensus 140 ~~~~~~LpLP~i~~~~~~V~-~~~~~~~~~~~~~~~~e~~W~--~LEe~lv-~s~~~~~~~w~~~~~~~~--~~~~~~~~ 213 (863)
......+.+|..|.--+|-+ +...-.... .... ..+.... ...+ ..+| +.+...- ........
T Consensus 577 ~~~~~~l~~~Ywdpflvr~v~l~~~iP~~~--------~i~~~~~~~~~~~~~~~~--~~pF-YnPf~k~~~~~~~~~~~ 645 (1185)
T PF08626_consen 577 NLGNSDLSAEYWDPFLVRDVKLESSIPLKP--------DILPPHPRKSEASSQSIN--KGPF-YNPFSKKSSSSSNKKEP 645 (1185)
T ss_pred ccCCcccccccCCCceeeeeecccCCCCcc--------chhhhhhhhhhhcccCCC--CCCc-CChhhcCCcccccccCc
Confidence 01222344444322211111 211100000 0000 0011111 1111 1223 3332210 01123378
Q ss_pred eeecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 002942 214 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 293 (863)
Q Consensus 214 ~~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i 293 (863)
++|+||+++|.|+|+||++++|+|++|+|.+++... +.....+
T Consensus 646 ~~V~gE~~~v~VtLqNPf~fel~I~~I~L~~egv~f-------------------------------------es~~~s~ 688 (1185)
T PF08626_consen 646 LWVVGEPAEVKVTLQNPFKFELEISSISLSTEGVPF-------------------------------------ESYPVSI 688 (1185)
T ss_pred cEEcCCeEEEEEEEECCccceEEEEEEEEEEcCCcc-------------------------------------ccceeee
Confidence 999999999999999999999999999999977632 1122466
Q ss_pred EE-CCCceEEEEEEEEeCceeEEEEEEEEEEeccceeeEEEeecchh-------hhhh--ccccccccC--------CCC
Q 002942 294 SL-GGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLV-------KKKI--AKGRRKVKS--------SPS 355 (863)
Q Consensus 294 ~L-~p~etk~V~L~v~P~~~G~L~I~Gv~~~L~g~v~g~~~F~i~g~-------rl~~--tK~kr~~~~--------~pd 355 (863)
.| +|.+++.|+|.++|+++|.|+|+||.+++.|+...+. +....+ ..+. .++++..+. ..+
T Consensus 689 ~l~~p~s~~~v~L~g~P~~~G~L~I~G~~i~v~g~~~~~~-~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 767 (1185)
T PF08626_consen 689 VLLPPNSTQTVRLSGTPLETGTLKITGCIIKVFGCREEFF-PIFKSEWGSIKGKKLKDKFRKGSRLDKPSPPLESESPKT 767 (1185)
T ss_pred EecCCCcceEEEEEEEECccceEEEEEEEEEEccccccee-cccCcccchhhhhhccccccccccccccccccccccccc
Confidence 66 9999999999999999999999999999998654332 222211 1111 111111111 124
Q ss_pred CceEEEEecCCCeEEEEEe---cCCccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhcc
Q 002942 356 NDLKFIVIKSLPKLEGLIH---PLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKM 432 (863)
Q Consensus 356 ~~L~~~V~~~~P~L~v~~~---~~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~ 432 (863)
..++++|+|++|.|++.+. +.+.|||+||.++++|+|+|.|.+|++.|.+.+.+...-.+- .......++..-.|.
T Consensus 768 ~~l~i~VIp~qP~L~v~~~sl~~~~~mlleGE~~~~~ItL~N~S~~pvd~l~~sf~DS~~~~~~-~~l~~k~l~~~e~ye 846 (1185)
T PF08626_consen 768 KSLSIKVIPPQPLLEVKSSSLTQGALMLLEGEKQTFTITLRNTSSVPVDFLSFSFQDSTIEPLQ-KALSNKDLSPDELYE 846 (1185)
T ss_pred CcceEEEECCCCeEEEEeccCCCcceEEECCcEEEEEEEEEECCccccceEEEEEEeccHHHHh-hhhhcccCChhhhhh
Confidence 5799999999999999988 455799999999999999999999999999998765211110 101111121111122
Q ss_pred ccccccccCCCCCCCCcceeecCCCcccCCCCeEEEEEEEEecC--CceeEEEEEEEEeeC-CCCCcceEEEEEEEEEEE
Q 002942 433 TNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAV--PGKISLSITIYYEMG-DVSSVIKYRLLRMHYNLE 509 (863)
Q Consensus 433 ~~~e~~~~~~~~~~~~~~v~~~P~~~~L~pGes~~lPlwlra~~--~G~~~l~lLfyYe~~-~~~~~~~~R~~R~~~~i~ 509 (863)
.+..... . ..+.+.....|+||++.++++.+.|.. -.-+...+.+.|... +.....-.|-+.+-..|+
T Consensus 847 lE~~l~~-------~--~~~~i~~~~~I~Pg~~~~~~~~~~~~~~~~~~~~~~i~l~y~~~~~~~~~~y~Rql~ipl~vt 917 (1185)
T PF08626_consen 847 LEWQLFK-------L--PAFRILNKPPIPPGESATFTVEVDGKPGPIQLTYADIQLEYGYSGEDSSTFYTRQLSIPLTVT 917 (1185)
T ss_pred hhhhhhc-------C--cceeecccCccCCCCEEEEEEEecCcccccceeeeeEEEEecccCCCCCCCeeEEEEEEEEEE
Confidence 2211110 1 113332222799999999999998872 236777888998864 223445569999999999
Q ss_pred EeceeeEEEE-EEeec------------------------cCCceEEEEEEEEeCCCCCceEEEEEEeeecceEEeecCC
Q 002942 510 VLPSLNVSFQ-ISPWS------------------------SRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQP 564 (863)
Q Consensus 510 V~pSL~vs~~-~~~s~------------------------s~~~~~ll~v~V~N~~~~~~~~l~Qvs~vS~~W~l~~l~~ 564 (863)
|.||+.+.-. +-|-. ......+|-+||.|....+ +.+ +|.. .
T Consensus 918 V~~slev~~~dilp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~clL~lDlrNsw~~~-~~v-~l~~---------~-- 984 (1185)
T PF08626_consen 918 VNPSLEVTRCDILPLNSDSVSSNSDSWISYITSLKSDVNDDSSDYCLLLLDLRNSWPNP-LSV-NLHY---------D-- 984 (1185)
T ss_pred EeceEEEeeeeEEecccccccccCcchhhhhhhhcccccCCCCCeEEEEEEEEecCCCc-eEE-EEEe---------c--
Confidence 9999999863 33331 2234578899999987764 331 1111 0
Q ss_pred CcccCCccccccccEEEEEEEEEecC
Q 002942 565 FDSIFPSESLFAGQALSCFFMLKNRG 590 (863)
Q Consensus 565 ~~~~~~~~~l~p~q~~~~~f~i~~~~ 590 (863)
.+.......+.||++.+..+-++++.
T Consensus 985 ~~~~~~~~~I~pg~t~Ri~vPi~Ri~ 1010 (1185)
T PF08626_consen 985 EDFSSSEITIEPGHTSRIIVPIKRIY 1010 (1185)
T ss_pred cCccccceEECCCCeEEEEEEecccc
Confidence 11111223689999999999999975
No 3
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=99.92 E-value=3.9e-26 Score=260.50 Aligned_cols=105 Identities=51% Similarity=0.908 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHhHhCc--ch-hh---HHHHHHHHHhhh--hcc-CC-Cc---chhhHhHHHhh
Q 002942 10 QNATRCGLWWVEMLKARHQYKDAATVYFRICGE--EP-LH---SAVMLEQASYCY--LLS-KP-PM---LHKYGFHLVLS 76 (863)
Q Consensus 10 ~~A~R~all~~E~lk~~~~~~eAa~~Lir~tse--d~-L~---SALLLEQAA~c~--L~~-~p-pm---~RKyAfhmVLA 76 (863)
.+|+||+++++|+++++|.|.+|+..++|++++ ++ ++ +||||||||+|| +.. .| || +||||||||||
T Consensus 297 ~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~RK~af~~vLA 376 (414)
T PF12739_consen 297 YYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFRKYAFHMVLA 376 (414)
T ss_pred cchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhHHHHHHHHHH
Confidence 499999999999999999999999999999998 87 99 999999999999 887 44 68 99999999999
Q ss_pred ccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHH
Q 002942 77 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHF 114 (863)
Q Consensus 77 GhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~ 114 (863)
||||.+|||++||+|||++|++||++++|.+|+|||||
T Consensus 377 g~~~~~~~~~~~a~rcy~~a~~vY~~~~W~~~~dhl~f 414 (414)
T PF12739_consen 377 GHRYSKAGQKKHALRCYKQALQVYEGKGWSLIEDHLHF 414 (414)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCcccccCC
Confidence 99999999999999999999999999999999999997
No 4
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.8e-16 Score=185.87 Aligned_cols=285 Identities=18% Similarity=0.157 Sum_probs=184.8
Q ss_pred CceeecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeee
Q 002942 212 SNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEV 291 (863)
Q Consensus 212 ~~~~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 291 (863)
.-++|||||++|.|+++||+.+++.+.||+|..+.+. |.....
T Consensus 686 ~LvwVvdepvef~v~v~Np~~fdl~V~Di~L~~egvn-------------------------------------F~~~~v 728 (1235)
T KOG1953|consen 686 KLVWVVDEPVEFSVYVRNPLSFDLEVQDIHLETEGVN-------------------------------------FKCSHV 728 (1235)
T ss_pred eEEEEeCCceEEEEEEcCccceeEEEeeEEEEecccc-------------------------------------ceeeee
Confidence 4589999999999999999999999999999976542 222336
Q ss_pred eEEECCCce-EEEEEEEEeCceeEEEEEEEEEEeccceeeEEEeecchhh-hhh--ccccc--cccCCCCCceEEEEecC
Q 002942 292 DISLGGAET-ILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVK-KKI--AKGRR--KVKSSPSNDLKFIVIKS 365 (863)
Q Consensus 292 ~i~L~p~et-k~V~L~v~P~~~G~L~I~Gv~~~L~g~v~g~~~F~i~g~r-l~~--tK~kr--~~~~~pd~~L~~~V~~~ 365 (863)
.+.++|... ++|+|.++|++.|.|.|+|++.+++|+..-.|.|...|-. .+. .+++. ...|. ++.+.|.|.
T Consensus 729 s~~~Ppns~~e~Irl~g~P~e~gpl~i~gy~v~cfg~~~~lq~f~~~gd~~~s~~v~~e~~kl~~vyl---~~~i~ilP~ 805 (1235)
T KOG1953|consen 729 SFTMPPNSIAERIRLTGTPTETGPLHIVGYRVKCFGCEPILQYFYEAGDKHKSLHVYLEKSKLVNVYL---RSLITILPL 805 (1235)
T ss_pred eeecCcccccceEEEeccccccCceeeeeEEEEEeeechHHHHHHhcccccCCccceeccchhheeec---ccccccCCC
Confidence 899999987 9999999999999999999999999976666777766541 111 11111 12233 245688999
Q ss_pred CCeEEEEEe----cCCccccCccEEEEEEEEEecCccccccEEEEecC------CceEEeccCCCCCccchhhhhccccc
Q 002942 366 LPKLEGLIH----PLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSH------PRFLSIGNRDDMTKEFPACLQKMTNA 435 (863)
Q Consensus 366 ~P~L~v~~~----~~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~------p~~~~~g~~~~~~~~~p~~l~~~~~~ 435 (863)
+|.+...-+ .+.-++|+||...+.|++.|.|.+|+....+.+.. +..+++-..++..-.++.|....+..
T Consensus 806 ~P~~~l~~d~k~~s~~~ivy~Gq~~d~~Itv~N~s~~pin~~~v~~~~~i~q~~~p~~~~~~~e~~s~~~e~~~l~~~l~ 885 (1235)
T KOG1953|consen 806 WPYFPLKKDLKTKSFDCIVYAGQPTDLSITVQNLSSGPINFAEVETGELIYQMLIPNTSFVEAEHISVLFEDSSLKAFLQ 885 (1235)
T ss_pred cccchhhhcccCCCccEEEEcCCcceEEEEEEecCccceEEEEEeeccchhhcCCCceeecCchhhHhhccCccchhHHH
Confidence 996655433 34568999999999999999999999999999998 44455544433211111111111100
Q ss_pred c------ccc-----cCCCCCCCC-cceeecCCCcccCCCCeEEEEEEEEecCCceeEEEEEEEEeeCCCCCcce-E-EE
Q 002942 436 E------QSV-----AGGNFNKMP-QAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIK-Y-RL 501 (863)
Q Consensus 436 e------~~~-----~~~~~~~~~-~~v~~~P~~~~L~pGes~~lPlwlra~~~G~~~l~lLfyYe~~~~~~~~~-~-R~ 501 (863)
. ++. ..-.++..+ ..+++++ ..+.+++..++-+-+|++-. ..-|...|.++-+.+... | |-
T Consensus 886 ai~~~P~is~n~~~el~~~et~vP~fT~~sll--ip~s~s~~de~~Ipl~~~l~---~~efilrrs~eip~~D~e~fer~ 960 (1235)
T KOG1953|consen 886 AIADKPVISANRLYELQFEETNVPTFTVESLL--IPLSPSERDEIHIPLRAPLS---QEEFILRRSVEIPEDDIEFFERR 960 (1235)
T ss_pred HHHhCCCCCcchhhhhhhhccCCCCccccccc--CCCCCCCCceEEEEeecccC---cceeEEEeeecCcccchHHHHHh
Confidence 0 000 000111111 2233333 25889999999999999722 223455555554433322 2 66
Q ss_pred EEEEEEEEEeceeeEEEEEEeeccCC-ceEEEEEEEEeCCCC
Q 002942 502 LRMHYNLEVLPSLNVSFQISPWSSRL-QQYLVRMDVVNQTSS 542 (863)
Q Consensus 502 ~R~~~~i~V~pSL~vs~~~~~s~s~~-~~~ll~v~V~N~~~~ 542 (863)
+|.-.-|+..|+.++++.-. -+++. -..+|.+++.|....
T Consensus 961 ~~~p~~i~i~p~v~~~aws~-lp~ddpf~~lv~v~~~ns~~~ 1001 (1235)
T KOG1953|consen 961 LRIPVSINISPRVDLKAWSA-LPEDDPFYCLVLVNFYNSFSE 1001 (1235)
T ss_pred hcCcceEEecccccchhccc-CCCCCceEEEEEEecccccCC
Confidence 78888888899998888632 12221 234556666665443
No 5
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=99.21 E-value=1e-06 Score=104.85 Aligned_cols=504 Identities=15% Similarity=0.168 Sum_probs=258.1
Q ss_pred eeecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 002942 214 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 293 (863)
Q Consensus 214 ~~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i 293 (863)
...+||++.+.|.|++....||.+++|++..+....+-....+... .....++ .+...-.....++
T Consensus 22 ~~~~~~~~~~ql~i~S~~~~pi~~s~l~V~fs~~~~~~~~~~~~~~--------~~~~~~~------~~~~~~~~~~~~L 87 (554)
T PF07919_consen 22 EGKVGEPVQFQLSIRSNAPSPIRFSSLKVNFSGSLYPIVISHSDAD--------ASSADSS------TSSGSPLSGSADL 87 (554)
T ss_pred CccCCCeEEEEEEEEcCCCCCEEeeEEEEEeeCCCCCceEeccccc--------cccccCc------ccccccccCccce
Confidence 4669999999999999999999999999987654322111111100 0000000 0000011123589
Q ss_pred EECCCceEEEEEEEEeCc---eeEEEEEEEEEEeccc-eeeEEEeecchhhhhh----ccc----cccccCCCCCceEEE
Q 002942 294 SLGGAETILVQLMVTPKV---EGILKIVGVRWRLSGS-LVGVYNFESNLVKKKI----AKG----RRKVKSSPSNDLKFI 361 (863)
Q Consensus 294 ~L~p~etk~V~L~v~P~~---~G~L~I~Gv~~~L~g~-v~g~~~F~i~g~rl~~----tK~----kr~~~~~pd~~L~~~ 361 (863)
.|.|++++...+.+.|++ .|.++|.+|...+... ..-...+......... ... ++...+.+-..-.+.
T Consensus 88 ~l~p~~~kv~~~~~~~~~~~~~g~~~i~sv~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~ 167 (554)
T PF07919_consen 88 TLSPGQTKVFSFKFVPREQDVSGELEITSVTLQLGSDKFDLTLSWSFESSSSSSSFWWWQSSDGPKSRPIRKPRDQSSIR 167 (554)
T ss_pred EEeecceEEEEEEEeccccccCCcEEEEEEEEEEecCeEEEEEEeccccccccccccccccCCcceeeeccCCCCCCEEE
Confidence 999999999999999999 9999999999999821 1111111111000000 000 111111111445788
Q ss_pred EecCCCeEEEEEecCCccccCccEEEEEEEEEecCccccccEEEEec-CCceEEeccCCCCCccchhhhhcccccccccc
Q 002942 362 VIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVS-HPRFLSIGNRDDMTKEFPACLQKMTNAEQSVA 440 (863)
Q Consensus 362 V~~~~P~L~v~~~~~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s-~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~ 440 (863)
|.|.=|.+++++.......|.||...+.|+|.|......+....... ++.........+.+ .. +...
T Consensus 168 I~p~pp~v~I~~~~~~~~~l~gE~~~i~i~I~n~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------~~~~- 235 (554)
T PF07919_consen 168 ILPRPPKVSIKLPNHKPPALTGEFYPIPITISNNEDEEASGVLEVRLLHPSQLGVSSEETED--LS---------QVNW- 235 (554)
T ss_pred EECCCCCeEEEeCCCCCCeEcCCEEEEEEEEEcCCCccceeEEEEEEecccccccccccCcc--ce---------eccc-
Confidence 99999999999955667899999999999999999887754333322 23222111111110 00 0000
Q ss_pred CCCCCCCCccee-ecCCCcccCCCCeEEEEEEEEecCCceeEEEEEEEEee--CCCCCcceEEEEEEEEEEEEeceeeEE
Q 002942 441 GGNFNKMPQAVF-SFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEM--GDVSSVIKYRLLRMHYNLEVLPSLNVS 517 (863)
Q Consensus 441 ~~~~~~~~~~v~-~~P~~~~L~pGes~~lPlwlra~~~G~~~l~lLfyYe~--~~~~~~~~~R~~R~~~~i~V~pSL~vs 517 (863)
+..+.....+ ..+ -+.|++|++.+.++.++...+|...|.+=++|.. .+.....-+-. ....+.+..-+.++
T Consensus 236 --~~~~~~~~~~~~~~-lg~l~~~~s~~~~l~i~~~~~~~~~L~i~~~Y~l~~~~~~~~~i~~~--~~~~l~~~~PF~~~ 310 (554)
T PF07919_consen 236 --DSDKDDEPLFLGIP-LGELAPGSSITVTLYIRTSRPGEYELSISVSYHLDVESDPETPISKT--KTVQLPVINPFEAN 310 (554)
T ss_pred --ccccccchhccCcc-cccCCCCCcEEEEEEEEeCCceeEEEEEEEEEEEecCCCCceeEEEe--EEEeeeEEcCEEee
Confidence 0000001111 111 3569999999999999977999999999999975 32211111211 22455555556444
Q ss_pred E----EEEeecc-CCceEEEEEEEEeCCCCCce---EEEEEEeeecceEEeecCCCcccCCccccccccEEEEEEEEEec
Q 002942 518 F----QISPWSS-RLQQYLVRMDVVNQTSSENF---QIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNR 589 (863)
Q Consensus 518 ~----~~~~s~s-~~~~~ll~v~V~N~~~~~~~---~l~Qvs~vS~~W~l~~l~~~~~~~~~~~l~p~q~~~~~f~i~~~ 589 (863)
. ...+..- .+.-+.+...-......... .=..--.....|.+..-. .+..+ . +=+....-+.+...
T Consensus 311 y~~~~~~~~~~~~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i--~s~a~-~---~L~I~~~~l~~~~~ 384 (554)
T PF07919_consen 311 YDFSPRFHPDPWDMPSPFDVDGSSDFQTLNPEPLTRDGILSVGLNQPWCLNSDI--ESFAP-E---PLEIEDISLEVLSS 384 (554)
T ss_pred eeEEeeeccCCccCCcccccccccccccccccccccccccccccCCCeEEEccc--eecCC-C---ceEEEEEEEEEecC
Confidence 4 2222222 00111111111100000000 000011223455553311 00000 0 11222233333322
Q ss_pred CCCCCCCCCCCCCCccccCceeecCC--CccccccCCCcchhhhhhhhhhcccccCCCCcccEEEEecccccCCCCCCCC
Q 002942 590 GESSTSSDDTSSPSRLLGSDVSLQGT--ADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISD 667 (863)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~d~~l~~~--~~~~~~~s~~P~~~f~~~~~~~~~~~~~~~~~~~ii~~w~a~~~~~~~~~~~ 667 (863)
......+..... .+---.+..+..+ .+..++.. +.-++..-...........+.+.|+-...++....
T Consensus 385 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~f~~~-------~~~~~~~~~~~~~~~~~g~~~I~WrR~~~~s~~~~-- 454 (554)
T PF07919_consen 385 NGGASCDVSSED-SSSPESGTVLQPGECREDQFCLR-------LDVQKLSLDDRRNVTLLGSLVIKWRRNSSNSSDPV-- 454 (554)
T ss_pred CCceeeeecccc-ccCCCccceeCcccccccccccc-------ccccccccccCccceeEEEEEEEEEECCCCCCCce--
Confidence 211100000000 0000001111100 00110000 00111111112333445778889998211111111
Q ss_pred Cccccceeeecc-cccCCCcEEEEEecCceeeccCCCCceeEeEEEEEEeCCCccEEEEEEecCCCCCCCCCcccCCCCC
Q 002942 668 PQHLFSHHACHC-SILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRS 746 (863)
Q Consensus 668 ~~~~g~~h~~~~-~~~~~~~i~~~l~~p~~i~h~F~~~~c~vpv~l~l~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~ 746 (863)
.. .-+..+ .....+|++..++.|..... --.+.++.+|.|.+.+...+.+.+-.
T Consensus 455 --~~--t~l~lP~~~v~~~~~~v~~~~p~~~~~-----~~~~~l~~~I~N~T~~~~~~~~~me~---------------- 509 (554)
T PF07919_consen 455 --VT--TPLPLPRVNVPSSPLRVLASVPPSAIV-----GEPFTLSYTIENPTNHFQTFELSMEP---------------- 509 (554)
T ss_pred --EE--EEeecCceEccCCCcEEEEecCCcccc-----CcEEEEEEEEECCCCccEEEEEEEcc----------------
Confidence 10 111111 12356789999988653332 34588999999999988877776521
Q ss_pred CCCCCCCCCcccccccccceecccCCccccccCCccCccCceEEeccccceEEeCCCceeEEEeEEEEecceeeecCCcE
Q 002942 747 AVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYA 826 (863)
Q Consensus 747 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~f~W~g~~~~~~~l~p~~~~~~~L~~~~~~~GvYdl~~~~ 826 (863)
...|++.|..+..+.|-|++...+..+..-+.+|.+-|=+++
T Consensus 510 --------------------------------------s~~F~fsG~k~~~~~llP~s~~~~~y~l~pl~~G~~~lP~l~ 551 (554)
T PF07919_consen 510 --------------------------------------SDDFMFSGPKQTTFSLLPFSRHTVRYNLLPLVAGWWILPRLK 551 (554)
T ss_pred --------------------------------------CCCEEEECCCcCceEECCCCcEEEEEEEEEccCCcEECCcEE
Confidence 223999999999999999999999999999999999775554
Q ss_pred E
Q 002942 827 L 827 (863)
Q Consensus 827 l 827 (863)
|
T Consensus 552 v 552 (554)
T PF07919_consen 552 V 552 (554)
T ss_pred E
Confidence 4
No 6
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=97.91 E-value=0.0018 Score=69.81 Aligned_cols=186 Identities=19% Similarity=0.231 Sum_probs=127.6
Q ss_pred CCc---cccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCC-CCccchhhhhccccccccccCCCCCCCCcce
Q 002942 376 LPE---RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDD-MTKEFPACLQKMTNAEQSVAGGNFNKMPQAV 451 (863)
Q Consensus 376 ~P~---~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~-~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v 451 (863)
+|. .+|.||.....|.+.|.+..++.++.+...-- ..+. ...++... .. ..
T Consensus 3 LP~sfG~iylGEtF~~~l~~~N~s~~~v~~v~ikvemq------T~s~~~r~~L~~~----------------~~-~~-- 57 (249)
T PF06159_consen 3 LPQSFGSIYLGETFSCYLSVNNDSNKPVRNVRIKVEMQ------TPSQSLRLPLSDN----------------EN-SD-- 57 (249)
T ss_pred CCcccCCEeecCCEEEEEEeecCCCCceEEeEEEEEEe------CCCCCccccCCCC----------------cc-cc--
Confidence 554 59999999999999999999999999886522 1111 00001000 00 00
Q ss_pred eecCCCcccCCCCeEEEEEEEEecCCceeEEEEEEEEeeCCCCCcceEEEEEEEEEEEEeceeeEEEEEEeeccC-----
Q 002942 452 FSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSR----- 526 (863)
Q Consensus 452 ~~~P~~~~L~pGes~~lPlwlra~~~G~~~l~lLfyYe~~~~~~~~~~R~~R~~~~i~V~pSL~vs~~~~~s~s~----- 526 (863)
-| ...|.||++++.-+-..=.+.|.|.|.+.+.|......+ -+-|..|-...+.|.+.|+|+..+......
T Consensus 58 --~~-~~~L~p~~~l~~iv~~~lkE~G~h~L~c~VsY~~~~~~~-g~~~tfRK~ykF~v~~PL~VktK~~~~~~~~~~~~ 133 (249)
T PF06159_consen 58 --SP-VASLAPGESLDFIVSHELKELGNHTLVCTVSYTDPTETS-GERRTFRKFYKFQVLNPLSVKTKVYNLEDDSSLSP 133 (249)
T ss_pred --cc-ccccCCCCeEeEEEEEEeeecCceEEEEEEEEecCcccC-CccceEeeeeEEeCCCCcEEEEEEEecCCcccccc
Confidence 01 235999999887776666799999998877554331111 234678999999999999999987665542
Q ss_pred CceEEEEEEEEeCCCCCceEEEEEEee-ecceEEeecCCCcccC------------CccccccccEEEEEEEEEecCC
Q 002942 527 LQQYLVRMDVVNQTSSENFQIHQLSSV-GHQWEISLLQPFDSIF------------PSESLFAGQALSCFFMLKNRGE 591 (863)
Q Consensus 527 ~~~~ll~v~V~N~~~~~~~~l~Qvs~v-S~~W~l~~l~~~~~~~------------~~~~l~p~q~~~~~f~i~~~~~ 591 (863)
...+.|.+.|+|.+.. .+.|..|..- ++.|+...+....... ....|.|++.-...|++++...
T Consensus 134 ~~~~~LEaqlqN~s~~-pl~Le~v~lep~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~~~L~P~d~~qylF~l~~~~~ 210 (249)
T PF06159_consen 134 RERVFLEAQLQNISSG-PLFLEKVKLEPSPGFKVTDLNWEPSGESSDGEFGGISSGSRPYLQPGDVRQYLFCLTPKPE 210 (249)
T ss_pred ceeEEEEEEEEecCCC-ceEEEEEEeecCCCceeEecccccccccccccccccccCCcceeCCCCEEEEEEEEEECCc
Confidence 2378999999999954 5888888775 4678887765211111 1235789999999999998775
No 7
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.32 E-value=0.00074 Score=73.84 Aligned_cols=118 Identities=20% Similarity=0.264 Sum_probs=88.9
Q ss_pred HHHHHHHhccchHHHHHHHHhHhC----cch-hhHHHHHHHHHhhhhccCC-----------------CcchhhHhHHHh
Q 002942 18 WWVEMLKARHQYKDAATVYFRICG----EEP-LHSAVMLEQASYCYLLSKP-----------------PMLHKYGFHLVL 75 (863)
Q Consensus 18 l~~E~lk~~~~~~eAa~~Lir~ts----ed~-L~SALLLEQAA~c~L~~~p-----------------pm~RKyAfhmVL 75 (863)
-.+.++|..+.|.+|+..+.+++. -++ ..+|-.+++||.||-..+| ..+++.|-.+.-
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~ 119 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKE 119 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 345577777888888887777652 122 5677777777777765533 337888999999
Q ss_pred hccchhcC-CCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 76 SGDRYKKC-DQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 76 AGhRyska-gqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.|.-|.+- |....|+.+|.+|..+|+..+-..-...+...+|..+..+|++++|+..|-+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999 9999999999999999999886666677888999999999999999988755
No 8
>COG1470 Predicted membrane protein [Function unknown]
Probab=97.11 E-value=0.044 Score=62.62 Aligned_cols=124 Identities=19% Similarity=0.239 Sum_probs=79.8
Q ss_pred eeEEECCCceEEEEEEEEeCce---eEEEEEEEEEEeccceeeEEEeecchhhhhhccccccccCCCCCceEEEEecCCC
Q 002942 291 VDISLGGAETILVQLMVTPKVE---GILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLP 367 (863)
Q Consensus 291 ~~i~L~p~etk~V~L~v~P~~~---G~L~I~Gv~~~L~g~v~g~~~F~i~g~rl~~tK~kr~~~~~pd~~L~~~V~~~~P 367 (863)
..+-|.|+|++.+.|.++|... |.+.+. |-- ++.. .+.-...|+++++..+-
T Consensus 325 t~vkL~~gE~kdvtleV~ps~na~pG~Ynv~-----------------I~A------~s~s--~v~~e~~lki~~~g~~~ 379 (513)
T COG1470 325 TSVKLKPGEEKDVTLEVYPSLNATPGTYNVT-----------------ITA------SSSS--GVTRELPLKIKNTGSYN 379 (513)
T ss_pred EEEEecCCCceEEEEEEecCCCCCCCceeEE-----------------EEE------eccc--cceeeeeEEEEeccccc
Confidence 4789999999999999999854 544332 210 0000 00001123444444333
Q ss_pred eEEEEEecCC--ccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCC
Q 002942 368 KLEGLIHPLP--ERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFN 445 (863)
Q Consensus 368 ~L~v~~~~~P--~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~ 445 (863)
.+ +.+..-| ..+-.||-..+.+.+.|.|.+||+||.+.++.|.-..+. + +
T Consensus 380 ~~-v~l~~g~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~----------------------V---d-- 431 (513)
T COG1470 380 EL-VKLDNGPYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIE----------------------V---D-- 431 (513)
T ss_pred ee-EEccCCcEEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEE----------------------E---C--
Confidence 22 2333323 357899999999999999999999999999999321110 0 0
Q ss_pred CCCcceeecCCCcccCCCCeEEEEEEEEec
Q 002942 446 KMPQAVFSFPEGISIQGETPLLWPLWYRAA 475 (863)
Q Consensus 446 ~~~~~v~~~P~~~~L~pGes~~lPlwlra~ 475 (863)
... +| .|+||++.++++.+|+|
T Consensus 432 ---~~~--I~---sL~pge~~tV~ltI~vP 453 (513)
T COG1470 432 ---EST--IP---SLEPGESKTVSLTITVP 453 (513)
T ss_pred ---ccc--cc---ccCCCCcceEEEEEEcC
Confidence 011 22 49999999999999999
No 9
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.16 E-value=0.012 Score=64.32 Aligned_cols=105 Identities=19% Similarity=0.244 Sum_probs=79.1
Q ss_pred chHHHHHHHHhHhC----cch-hhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcC
Q 002942 28 QYKDAATVYFRICG----EEP-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG 102 (863)
Q Consensus 28 ~~~eAa~~Lir~ts----ed~-L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~ 102 (863)
.|.+|+..|.++.. ..+ -.++=..++||.|+...+ .....|-+++.||.-|.+. +...|++||.+|..+|..
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~--~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~ 106 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG--DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYRE 106 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh
Confidence 45555555555442 112 368899999999998755 4568899999999999888 899999999999999998
Q ss_pred CCccchhhhHHHHHHHHHHHh-CCHHHHHHHHHH
Q 002942 103 STWSHIKDHVHFHIGQWYAVL-GMHDIAVAHMLE 135 (863)
Q Consensus 103 ~~W~~~edHI~~tLGrq~~~L-g~~~~Av~h~l~ 135 (863)
.|=..---.++..+|+.+... |+++.|+.++..
T Consensus 107 ~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~ 140 (282)
T PF14938_consen 107 AGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQK 140 (282)
T ss_dssp CT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 774444456777899999888 999999988755
No 10
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=95.60 E-value=0.13 Score=47.82 Aligned_cols=90 Identities=19% Similarity=0.262 Sum_probs=52.5
Q ss_pred eeecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 002942 214 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 293 (863)
Q Consensus 214 ~~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i 293 (863)
..++|+++.|.+.|+||+..+|.==++.|.+.-..-+|-. .. .+......+
T Consensus 10 ~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~----------------~~-------------~~~~~~~~~ 60 (107)
T PF00927_consen 10 DPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLT----------------RD-------------QFKKEKFEV 60 (107)
T ss_dssp EEBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTE----------------EE-------------EEEEEEEEE
T ss_pred CccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcc----------------cc-------------cEeEEEcce
Confidence 3569999999999999999876543344332211110100 00 122344579
Q ss_pred EECCCceEEEEEEEEeCceeEEEEEEEEEEec--cceeeEE
Q 002942 294 SLGGAETILVQLMVTPKVEGILKIVGVRWRLS--GSLVGVY 332 (863)
Q Consensus 294 ~L~p~etk~V~L~v~P~~~G~L~I~Gv~~~L~--g~v~g~~ 332 (863)
.|+|++++.+.+.++|.+.|.-++..-.+++. +.|.|..
T Consensus 61 ~l~p~~~~~~~~~i~p~~yG~~~~l~~~~~~~~l~~V~g~~ 101 (107)
T PF00927_consen 61 TLKPGETKSVEVTITPSQYGPKQLLVDLFSSDALADVKGTK 101 (107)
T ss_dssp EE-TTEEEEEEEEE-HHSHEEECCEEEEEEESSEEEEEEEE
T ss_pred eeCCCCEEEEEEEEEceeEecchhcchhcchhhhcCeeccE
Confidence 99999999999999999999843332134433 3455543
No 11
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=0.051 Score=57.36 Aligned_cols=106 Identities=21% Similarity=0.256 Sum_probs=81.3
Q ss_pred cchHHHHHHHHhHhCcc----h-hhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhc
Q 002942 27 HQYKDAATVYFRICGEE----P-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYK 101 (863)
Q Consensus 27 ~~~~eAa~~Lir~tsed----~-L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~ 101 (863)
+.|.||+..++|+.+.- + =-++-...+||-|+++.. ...-.|=-+|-|++-|.|. +...|.+|...|.++|-
T Consensus 28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~--skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt 104 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYT 104 (288)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHH
Confidence 46899999999877521 2 346777888888777544 6678999999999999888 99999999999999999
Q ss_pred CCCccchhhhHHHHHHHHHHH-hCCHHHHHHHHHH
Q 002942 102 GSTWSHIKDHVHFHIGQWYAV-LGMHDIAVAHMLE 135 (863)
Q Consensus 102 ~~~W~~~edHI~~tLGrq~~~-Lg~~~~Av~h~l~ 135 (863)
..|--..----|+.||..+-. |.+++.||.|+-.
T Consensus 105 ~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~ 139 (288)
T KOG1586|consen 105 DMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQ 139 (288)
T ss_pred hhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHH
Confidence 877543333335677877654 4788888888743
No 12
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=94.52 E-value=0.34 Score=44.46 Aligned_cols=87 Identities=20% Similarity=0.262 Sum_probs=58.2
Q ss_pred CeEEEEEecCCc-cccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCC
Q 002942 367 PKLEGLIHPLPE-RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFN 445 (863)
Q Consensus 367 P~L~v~~~~~P~-~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~ 445 (863)
|.|++.-..+.- .+..|+.....|+|+|.|..|++. ++. .|+ ...
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f-~v~--~~~--------~~~----------------------- 47 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARF-RVR--QPE--------SLS----------------------- 47 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEE-EEE--eCC--------cCC-----------------------
Confidence 555554333322 578999999999999999988532 222 221 000
Q ss_pred CCCcceee-cCCCcccCCCCeEEEEEEEEec-CCceeEEEEEEEEeeC
Q 002942 446 KMPQAVFS-FPEGISIQGETPLLWPLWYRAA-VPGKISLSITIYYEMG 491 (863)
Q Consensus 446 ~~~~~v~~-~P~~~~L~pGes~~lPlwlra~-~~G~~~l~lLfyYe~~ 491 (863)
..|. .|..+.|+||++.++.+.+.++ ..|..+..+.+..|..
T Consensus 48 ----~~~~v~~~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l~i~~e~~ 91 (102)
T PF14874_consen 48 ----SFFSVEPPSGFLAPGESVELEVTFSPTKPLGDYEGSLVITTEGG 91 (102)
T ss_pred ----CCEEEECCCCEECCCCEEEEEEEEEeCCCCceEEEEEEEEECCe
Confidence 0111 1335679999999999999955 7899998888876643
No 13
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.46 E-value=0.13 Score=45.22 Aligned_cols=72 Identities=18% Similarity=0.367 Sum_probs=46.5
Q ss_pred CccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcccC
Q 002942 382 AGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQ 461 (863)
Q Consensus 382 ~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~~~~L~ 461 (863)
.||...+.++++|.|..++.++.+..+-|+=...... + .. .+ .|.
T Consensus 3 ~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~-------~----------------------~~---~~---~l~ 47 (78)
T PF10633_consen 3 PGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSAS-------P----------------------AS---VP---SLP 47 (78)
T ss_dssp TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---E-------E----------------------EE---E-----B-
T ss_pred CCCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCC-------c----------------------cc---cc---cCC
Confidence 6999999999999999999999999988843220000 0 00 11 589
Q ss_pred CCCeEEEEEEEEec---CCceeEEEEEEEE
Q 002942 462 GETPLLWPLWYRAA---VPGKISLSITIYY 488 (863)
Q Consensus 462 pGes~~lPlwlra~---~~G~~~l~lLfyY 488 (863)
||++.++.+-|+.| .+|...+.+...|
T Consensus 48 pG~s~~~~~~V~vp~~a~~G~y~v~~~a~y 77 (78)
T PF10633_consen 48 PGESVTVTFTVTVPADAAPGTYTVTVTARY 77 (78)
T ss_dssp TTSEEEEEEEEEE-TT--SEEEEEEEEEE-
T ss_pred CCCEEEEEEEEECCCCCCCceEEEEEEEEe
Confidence 99999999999988 4699888888777
No 14
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=94.41 E-value=0.23 Score=44.79 Aligned_cols=86 Identities=14% Similarity=0.240 Sum_probs=57.0
Q ss_pred CeEEEEEecCCccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCC
Q 002942 367 PKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNK 446 (863)
Q Consensus 367 P~L~v~~~~~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~ 446 (863)
|=|.+.....|..+..|+..++.++++|.|..+..++.+.+ + .++... ..
T Consensus 2 pDL~v~~~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~-----~-~~~~~~--------------~~---------- 51 (101)
T PF07705_consen 2 PDLTVSITVSPSNVVPGEPVTITVTVKNNGTADAENVTVRL-----Y-LDGNSV--------------ST---------- 51 (101)
T ss_dssp --EEE-EEEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEE-----E-ETTEEE--------------EE----------
T ss_pred CCEEEEEeeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEE-----E-ECCcee--------------cc----------
Confidence 55667566678899999999999999999999999888872 1 111100 00
Q ss_pred CCcceeecCCCcccCCCCeEEEEEEEEecCCceeEEEEEEEEee
Q 002942 447 MPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEM 490 (863)
Q Consensus 447 ~~~~v~~~P~~~~L~pGes~~lPlwlra~~~G~~~l~lLfyYe~ 490 (863)
.. + ..|.||++.++.+-+..+.+|.+.+.+.+-++.
T Consensus 52 --~~---i---~~L~~g~~~~v~~~~~~~~~G~~~i~~~iD~~n 87 (101)
T PF07705_consen 52 --VT---I---PSLAPGESETVTFTWTPPSPGSYTIRVVIDPDN 87 (101)
T ss_dssp --EE---E---SEB-TTEEEEEEEEEE-SS-CEEEEEEEESTTT
T ss_pred --EE---E---CCcCCCcEEEEEEEEEeCCCCeEEEEEEEeeCC
Confidence 01 1 249999999999999999999999888875543
No 15
>KOG2625 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.74 E-value=0.61 Score=48.66 Aligned_cols=315 Identities=16% Similarity=0.215 Sum_probs=167.7
Q ss_pred cccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCc
Q 002942 379 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGI 458 (863)
Q Consensus 379 ~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~~~ 458 (863)
.+|-||...+.|.+.|-+...++++-++++-..- .-..-+|++.+..++-+.. .+ ++.
T Consensus 10 niflgetfs~yinv~nds~k~v~~i~lk~dlqts-------sqrl~l~~s~~~~aei~~~------------~c---~~~ 67 (348)
T KOG2625|consen 10 NIFLGETFSFYINVHNDSEKTVKDILLKADLQTS-------SQRLNLPASNAAAAEIEPD------------CC---EDD 67 (348)
T ss_pred ceeeccceEEEEEEecchhhhhhhheeeeccccc-------ceeeccccchhhhhhcCcc------------cc---chh
Confidence 4899999999999999999999999988764310 0011122211100000000 00 011
Q ss_pred ccCCCCeEEEEEEEEe-cCCceeEEEEEEEEeeCCCCCcceEEEEEEEEEEEEeceeeEEEEEEeeccC----CceEEEE
Q 002942 459 SIQGETPLLWPLWYRA-AVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSR----LQQYLVR 533 (863)
Q Consensus 459 ~L~pGes~~lPlwlra-~~~G~~~l~lLfyYe~~~~~~~~~~R~~R~~~~i~V~pSL~vs~~~~~s~s~----~~~~ll~ 533 (863)
+| -|- .+.|.|-+-.-+.|...+ +.+|-| |-...+.|+.-++|....-..-|. .++..|.
T Consensus 68 vi-----------~hevkeig~hilicavny~tq~-ge~myf---rkffkf~v~kpidvktkfynaesdlssv~~dvfle 132 (348)
T KOG2625|consen 68 VI-----------HHEVKEIGQHILICAVNYKTQA-GEKMYF---RKFFKFPVLKPIDVKTKFYNAESDLSSVNDDVFLE 132 (348)
T ss_pred hh-----------hHHHHhhccEEEEEEEeeeccC-ccchhH---Hhhccccccccccccceeecccccccccchhhhhh
Confidence 11 011 145777777777786544 344644 566778888888888765443332 2455666
Q ss_pred EEEEeCCCCCceEEEEEEe-eecceEEeecCCCcccCCccccccccEEEEEEEEEecCCCCCCCCCCCCCCccccCceee
Q 002942 534 MDVVNQTSSENFQIHQLSS-VGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESSTSSDDTSSPSRLLGSDVSL 612 (863)
Q Consensus 534 v~V~N~~~~~~~~l~Qvs~-vS~~W~l~~l~~~~~~~~~~~l~p~q~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~d~~l 612 (863)
-+++|++.+..|. ..|+. -|-++.+..+...+ ..|+-++.| ...+| |
T Consensus 133 aqien~s~a~mfl-ekv~ldps~~ynvt~i~~~~--------e~gdcvstf-----------------g~~~~------l 180 (348)
T KOG2625|consen 133 AQIENMSNANMFL-EKVELDPSIHYNVTEIAHED--------EAGDCVSTF-----------------GSGAL------L 180 (348)
T ss_pred hhhhcccccchhh-hhhccCchheecceeecchh--------hcccccccc-----------------ccccc------c
Confidence 7788887765432 11111 01222222221110 011111100 00111 1
Q ss_pred cCCCccccccCCCcchhhhhhhhhhcccccCCCCcccEEEEecccccCCCCCCCCCccccceeeecccccCCCcEEEEE-
Q 002942 613 QGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLV- 691 (863)
Q Consensus 613 ~~~~~~~~~~s~~P~~~f~~~~~~~~~~~~~~~~~~~ii~~w~a~~~~~~~~~~~~~~~g~~h~~~~~~~~~~~i~~~l- 691 (863)
...+..++-+.-.|-+||+.---+- +.-..-=.+=+.|+.+..|... +.+ -...+-.-+-..++.++
T Consensus 181 kp~d~rq~l~cl~pk~d~~~~~gi~----k~lt~igkldi~wktnlgekgr-lqt-------s~lqriapgygdvrlsle 248 (348)
T KOG2625|consen 181 KPKDIRQFLFCLKPKADFAEKAGII----KDLTSIGKLDISWKTNLGEKGR-LQT-------SALQRIAPGYGDVRLSLE 248 (348)
T ss_pred CccchhhheeecCchHHHHHhhccc----cccceeeeeEEEeecccccccc-chH-------HHHHhhcCCCCceEEEee
Confidence 1111233344445556665322111 1111111244689987776543 211 00001011234566666
Q ss_pred ecCceeeccCCCCceeEeEEEEEEeCCCccEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccC
Q 002942 692 DGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQL 771 (863)
Q Consensus 692 ~~p~~i~h~F~~~~c~vpv~l~l~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 771 (863)
.-|..+... .+ ..++-.|.|||+-.+|+..++-..
T Consensus 249 ~~p~~vdle--ep---f~iscki~ncseraldl~l~l~~~---------------------------------------- 283 (348)
T KOG2625|consen 249 AIPACVDLE--EP---FEISCKITNCSERALDLQLELCNP---------------------------------------- 283 (348)
T ss_pred ccccccccC--CC---eEEEEEEcccchhhhhhhhhhcCC----------------------------------------
Confidence 334444322 11 124556889999888887775331
Q ss_pred CccccccCCccCccCceEEeccccceEE-eCCCceeEEEeEEEEecceeeecCCcEEEEEE
Q 002942 772 PLNQVKRSSLLESVSPFIWSGSSASSVR-LQPMSTTDIAMKVCLFSPGTYDLSNYALNWKL 831 (863)
Q Consensus 772 ~~~~~~~p~~~~~~~~f~W~g~~~~~~~-l~p~~~~~~~L~~~~~~~GvYdl~~~~l~~~~ 831 (863)
. ++...|||.+-+++- |.|-+..++.|.+-=..-|.-.+++.|+.=++
T Consensus 284 --------n----nrhi~~c~~sg~qlgkl~ps~~l~~al~l~~~~~giqsisgiritdtf 332 (348)
T KOG2625|consen 284 --------N----NRHIHFCGISGRQLGKLHPSQHLCFALNLFPSTQGIQSISGIRITDTF 332 (348)
T ss_pred --------C----CceeEEeccccccccCCCCcceeeeEEeeccchhcceeecceEeehhh
Confidence 1 556799999999997 99999999999998888999999999987544
No 16
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=89.75 E-value=1 Score=41.56 Aligned_cols=69 Identities=17% Similarity=0.150 Sum_probs=45.1
Q ss_pred ccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcccCC
Q 002942 383 GDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQG 462 (863)
Q Consensus 383 GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~~~~L~p 462 (863)
+......|.|+|.|..++.. +|.+++|..+.+ -|.-+.|+|
T Consensus 17 ~~~~~~~l~l~N~s~~~i~f-Kiktt~~~~y~v--------------------------------------~P~~G~i~p 57 (109)
T PF00635_consen 17 NKQQSCELTLTNPSDKPIAF-KIKTTNPNRYRV--------------------------------------KPSYGIIEP 57 (109)
T ss_dssp SS-EEEEEEEEE-SSSEEEE-EEEES-TTTEEE--------------------------------------ESSEEEE-T
T ss_pred CceEEEEEEEECCCCCcEEE-EEEcCCCceEEe--------------------------------------cCCCEEECC
Confidence 56699999999999998766 788888854432 244567999
Q ss_pred CCeEEEEEEEEec--CCce-eEEEEEEEEee
Q 002942 463 ETPLLWPLWYRAA--VPGK-ISLSITIYYEM 490 (863)
Q Consensus 463 Ges~~lPlwlra~--~~G~-~~l~lLfyYe~ 490 (863)
|++.++.|++++. .++. ..=+|+|+|-.
T Consensus 58 ~~~~~i~I~~~~~~~~~~~~~~dkf~I~~~~ 88 (109)
T PF00635_consen 58 GESVEITITFQPFDFEPSNKKKDKFLIQSIV 88 (109)
T ss_dssp TEEEEEEEEE-SSSTTTTSTSSEEEEEEEEE
T ss_pred CCEEEEEEEEEecccCCCCCCCCEEEEEEEE
Confidence 9999999999985 2221 14455555544
No 17
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=89.74 E-value=2 Score=42.09 Aligned_cols=87 Identities=14% Similarity=0.188 Sum_probs=60.6
Q ss_pred HHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhh
Q 002942 20 VEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSV 99 (863)
Q Consensus 20 ~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~v 99 (863)
+..+..+|.|++|...+-++...++ . .+..|+-+ |.-+.+.|+...|+.||.+|+..
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~P-------------------~---~~~a~~~l-g~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQP-------------------W---SWRAHIAL-AGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC-------------------C---cHHHHHHH-HHHHHHHhhHHHHHHHHHHHHhc
Confidence 5666777888888776665544333 1 12222222 33455788899999999999975
Q ss_pred hcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 100 YKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 100 Y~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..+ ....++.+|..+..+|++++|+..|.+
T Consensus 88 --~p~----~~~a~~~lg~~l~~~g~~~eAi~~~~~ 117 (144)
T PRK15359 88 --DAS----HPEPVYQTGVCLKMMGEPGLAREAFQT 117 (144)
T ss_pred --CCC----CcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 222 235778999999999999999988765
No 18
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.67 E-value=1.5 Score=46.69 Aligned_cols=89 Identities=20% Similarity=0.246 Sum_probs=71.8
Q ss_pred chhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcC-CCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHH
Q 002942 43 EPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKC-DQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYA 121 (863)
Q Consensus 43 d~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyska-gqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~ 121 (863)
|+-.++=.||.|--.| ..-+.||..|-|-+-=|.-|+.. ...+.|+-||.+|-.-|+|-.=.-.-.--+...+.++.
T Consensus 88 ~~~eAv~cL~~aieIy--t~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa 165 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIY--TDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA 165 (288)
T ss_pred ChHHHHHHHHHHHHHH--HhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH
Confidence 3345556777777744 45557999999999999999988 77999999999999999987655555567788899999
Q ss_pred HhCCHHHHHHHH
Q 002942 122 VLGMHDIAVAHM 133 (863)
Q Consensus 122 ~Lg~~~~Av~h~ 133 (863)
.++|...|++-+
T Consensus 166 ~leqY~~Ai~iy 177 (288)
T KOG1586|consen 166 QLEQYSKAIDIY 177 (288)
T ss_pred HHHHHHHHHHHH
Confidence 999999998654
No 19
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=87.86 E-value=1.8 Score=46.66 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=72.7
Q ss_pred hHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCC
Q 002942 46 HSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGM 125 (863)
Q Consensus 46 ~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~ 125 (863)
..-=||+.|-..|-..+ ..|-...=++.=|.=|-+.|+..-|+.+|..+...|+..||..+...+...|-+.+..+|+
T Consensus 156 ~iI~lL~~A~~~f~~~~--~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYG--QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 44567888888786544 3555555555667888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 002942 126 HDIAVAHMLE 135 (863)
Q Consensus 126 ~~~Av~h~l~ 135 (863)
.+..+...++
T Consensus 234 ~~~~l~~~le 243 (247)
T PF11817_consen 234 VEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHH
Confidence 9998876543
No 20
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=87.14 E-value=7.5 Score=35.26 Aligned_cols=96 Identities=16% Similarity=0.141 Sum_probs=64.7
Q ss_pred HHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHH
Q 002942 17 LWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSA 96 (863)
Q Consensus 17 ll~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A 96 (863)
+-.+..+-..|.|.+|...|-++.... |.-.+. +--+...|.-|.+.|+...|+.+|..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-------------------~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 65 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKY-------------------PKSTYA-PNAHYWLGEAYYAQGKYADAAKAFLAV 65 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-------------------CCcccc-HHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 344555566778888877665554321 111111 112233556677899999999999999
Q ss_pred HhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 97 VSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 97 ~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+..|.+..+. +-+.+.+|+.+..+|+.+.|++++-+
T Consensus 66 ~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 66 VKKYPKSPKA---PDALLKLGMSLQELGDKEKAKATLQQ 101 (119)
T ss_pred HHHCCCCCcc---cHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 9988654321 34678999999999999999988755
No 21
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=86.87 E-value=2.3 Score=37.26 Aligned_cols=80 Identities=18% Similarity=0.363 Sum_probs=47.8
Q ss_pred ccchHHHHHHHHhHhCcch-h-hHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCC
Q 002942 26 RHQYKDAATVYFRICGEEP-L-HSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGS 103 (863)
Q Consensus 26 ~~~~~eAa~~Lir~tsed~-L-~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~ 103 (863)
.|.|.+|...+-++-..++ - .++.+ -.-|.|+.+. |+ |.+|+.+++..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~-~~la~~~~~~----------------------~~-------y~~A~~~~~~~ 51 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYL-YNLAQCYFQQ----------------------GK-------YEEAIELLQKL 51 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHH-HHHHHHHHHT----------------------TH-------HHHHHHHHHCH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHH-HHHHHHHHHC----------------------CC-------HHHHHHHHHHh
Confidence 4678888877777665443 1 23333 3366666643 33 34455555442
Q ss_pred CccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 104 TWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 104 ~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.+..-..-+++.+|+-++.+|++++|+++|-+
T Consensus 52 ~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 52 KLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp THHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 33322234677789999999999999998853
No 22
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=86.78 E-value=1 Score=38.71 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=44.8
Q ss_pred ccchhcCCCcHHHHHHHHHHHhhhcCCCc-cchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 77 GDRYKKCDQINHAIRTYRSAVSVYKGSTW-SHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 77 GhRyskagqr~hAlRCY~~A~~vY~~~~W-~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.-|..-|+..-|+.+|.+|+++++.-+= ..----..+.||..+..+|++++|++++..
T Consensus 12 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 12 ARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55667889999999999999999765542 111123577889999999999999988754
No 23
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=85.43 E-value=5.9 Score=37.37 Aligned_cols=92 Identities=14% Similarity=0.134 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHH
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYR 94 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~ 94 (863)
..+..+..+-..|.|.+|...+-++...++- ..-++ ...|.-|.+.|+...|+.+|.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~----------------------~~la~~~~~~~~~~~A~~~~~ 75 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYW----------------------LGLAACCQMLKEYEEAIDAYA 75 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHH----------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777778888877766554432220 11111 122444556677789999999
Q ss_pred HHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 95 SAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 95 ~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+++..... ..-.++.+|..+..+|+++.|++.|.+
T Consensus 76 ~~~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~ 110 (135)
T TIGR02552 76 LAAALDPD------DPRPYFHAAECLLALGEPESALKALDL 110 (135)
T ss_pred HHHhcCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99886422 234568899999999999999988855
No 24
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=85.14 E-value=1.1 Score=37.38 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=45.9
Q ss_pred HHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhC-CHHHHHHHHHH
Q 002942 73 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLG-MHDIAVAHMLE 135 (863)
Q Consensus 73 mVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg-~~~~Av~h~l~ 135 (863)
+..-|..|-..|+...|+.+|.+|+++-.. ..-+++.+|..+..+| ++++|++++..
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPN------NAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 445677777889999999999999997422 1228899999999999 79999988754
No 25
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=85.07 E-value=4.5 Score=45.97 Aligned_cols=55 Identities=13% Similarity=0.030 Sum_probs=43.7
Q ss_pred hhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 75 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 75 LAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.-|.-|.+.|....|+++|.+|+.+.-.. .-.++.+|..++.+|++++|+.+|.+
T Consensus 41 ~~a~~~~~~g~~~eAl~~~~~Al~l~P~~------~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 41 DRAQANIKLGNFTEAVADANKAIELDPSL------AKAYLRKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 33445556788999999999999985432 23578999999999999999988865
No 26
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=84.89 E-value=8.2 Score=39.81 Aligned_cols=96 Identities=11% Similarity=0.068 Sum_probs=67.9
Q ss_pred CCCeEEEEEecCCccccCccEEEEEEEEEecCccccccEEEEecC--CceEEeccCCCCCccchhhhhccccccccccCC
Q 002942 365 SLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSH--PRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGG 442 (863)
Q Consensus 365 ~~P~L~v~~~~~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~--p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~ 442 (863)
.-|+|-++=.-++..+..|+-..+.++|.|.|..++.++.+.=+. ++.|.+-+.
T Consensus 19 ~~a~llv~K~il~~~~v~g~~v~V~~~iyN~G~~~A~dV~l~D~~fp~~~F~lvsG------------------------ 74 (181)
T PF05753_consen 19 SPARLLVSKQILNKYLVEGEDVTVTYTIYNVGSSAAYDVKLTDDSFPPEDFELVSG------------------------ 74 (181)
T ss_pred CCcEEEEEEeeccccccCCcEEEEEEEEEECCCCeEEEEEEECCCCCccccEeccC------------------------
Confidence 456666665557788999999999999999999999999886411 111111110
Q ss_pred CCCCCCcceeecCCCcccCCCCeEEEEEEEEecCCceeEEE-EEEEEeeCCC
Q 002942 443 NFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLS-ITIYYEMGDV 493 (863)
Q Consensus 443 ~~~~~~~~v~~~P~~~~L~pGes~~lPlwlra~~~G~~~l~-lLfyYe~~~~ 493 (863)
. .. . ....|.||+.++.-+.+|+...|.+.+. ..+.|...+.
T Consensus 75 ~-----~s-~---~~~~i~pg~~vsh~~vv~p~~~G~f~~~~a~VtY~~~~~ 117 (181)
T PF05753_consen 75 S-----LS-A---SWERIPPGENVSHSYVVRPKKSGYFNFTPAVVTYRDSEG 117 (181)
T ss_pred c-----eE-E---EEEEECCCCeEEEEEEEeeeeeEEEEccCEEEEEECCCC
Confidence 0 00 0 1246999999999999999899999984 6677765543
No 27
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=84.85 E-value=1.6 Score=36.16 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=44.3
Q ss_pred hccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 76 SGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 76 AGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
-|.-|-+.|+..-|+++|++++..+-+ ..-.++.+|+.+..+|++++|+..|.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 356677899999999999999987633 445889999999999999999977754
No 28
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=84.56 E-value=7.5 Score=31.98 Aligned_cols=89 Identities=17% Similarity=0.205 Sum_probs=57.9
Q ss_pred HHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHHH
Q 002942 18 WWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAV 97 (863)
Q Consensus 18 l~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~ 97 (863)
..+.++...|.+.+|...+-++-...+- ....+-..|.| |...|....|+.+|.+++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAA----------------------YYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHH
Confidence 3455666678888887766655443320 00111222222 233477788999999999
Q ss_pred hhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 98 SVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 98 ~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
....... -..+.+|..+..+|+.+.|..++.+
T Consensus 62 ~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 62 ELDPDNA------KAYYNLGLAYYKLGKYEEALEAYEK 93 (100)
T ss_pred hCCCcch------hHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8765443 4678889999999999999888754
No 29
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=82.60 E-value=5.3 Score=52.46 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=47.4
Q ss_pred hhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 75 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 75 LAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.-|..|...|+...|+.+|++|+.+.-+..| +++.+|+.+..+|++++|++.|.+
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~------~~~~LA~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLALDPGSVW------LTYRLAQDLRQAGQRSQADALMRR 520 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3466788899999999999999999877666 789999999999999999877654
No 30
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=82.48 E-value=9.6 Score=37.93 Aligned_cols=57 Identities=16% Similarity=-0.004 Sum_probs=41.3
Q ss_pred ccchhcCCCcHHHHHHHHHHHhhhcCCCccc-hhhhHHHHHHHHHHHhCCHHHHHHHH
Q 002942 77 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSH-IKDHVHFHIGQWYAVLGMHDIAVAHM 133 (863)
Q Consensus 77 GhRyskagqr~hAlRCY~~A~~vY~~~~W~~-~edHI~~tLGrq~~~Lg~~~~Av~h~ 133 (863)
|.-|.+.|+...|+.+|.+|+.+....+..+ .--.++..+||.+..+|+++.|+..+
T Consensus 79 g~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 79 GLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHH
Confidence 6667788999999999999998855443221 11236667788888999988776554
No 31
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=82.02 E-value=3.8 Score=41.17 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=50.3
Q ss_pred HhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 70 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 70 AfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|..+..-|.-|...|+...|+.||.+|+.+.....| ...+++.+|..+..+|+++.|++++.+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~ 97 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND---RSYILYNMGIIYASNGEHDKALEYYHQ 97 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334455566777889999999999999998766543 235789999999999999999998866
No 32
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=81.86 E-value=7.2 Score=45.07 Aligned_cols=101 Identities=21% Similarity=0.327 Sum_probs=60.9
Q ss_pred HHHHhccchHHHHHHHHhHhCcchhhHHHHH---------HHHHhhhhc---cCCCcchhhHhHHHhhccchhcCCCcHH
Q 002942 21 EMLKARHQYKDAATVYFRICGEEPLHSAVML---------EQASYCYLL---SKPPMLHKYGFHLVLSGDRYKKCDQINH 88 (863)
Q Consensus 21 E~lk~~~~~~eAa~~Lir~tsed~L~SALLL---------EQAA~c~L~---~~ppm~RKyAfhmVLAGhRyskagqr~h 88 (863)
.+++..+.|++|...|-++...|+ -.+++| |+-|.-.|+ ...|+- +-=|.+-+.=+-+-++.+.
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~p-ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d---~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDP-EVAVLLARVYLLMNEEVEAIRLLNEALKENPQD---SELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCC-cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHH
Confidence 445556677777777777766554 111111 111211111 012211 2223334444556667799
Q ss_pred HHHHHHHHHhhhcC--CCccchhhhHHHHHHHHHHHhCCHHHHHHHH
Q 002942 89 AIRTYRSAVSVYKG--STWSHIKDHVHFHIGQWYAVLGMHDIAVAHM 133 (863)
Q Consensus 89 AlRCY~~A~~vY~~--~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~ 133 (863)
|+.|.++|....=. +.| +.|++.|..+||+++|+.-+
T Consensus 253 AL~iAk~av~lsP~~f~~W--------~~La~~Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 253 ALEIAKKAVELSPSEFETW--------YQLAECYIQLGDFENALLAL 291 (395)
T ss_pred HHHHHHHHHHhCchhHHHH--------HHHHHHHHhcCCHHHHHHHH
Confidence 99999999987654 567 88999999999999998544
No 33
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=81.50 E-value=6.2 Score=38.44 Aligned_cols=96 Identities=17% Similarity=0.164 Sum_probs=58.5
Q ss_pred hhhHHHHHHHHHHHHHHhccchHHHHHHHHhHhC--cch-hhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCC
Q 002942 8 GQQNATRCGLWWVEMLKARHQYKDAATVYFRICG--EEP-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCD 84 (863)
Q Consensus 8 ~~~~A~R~all~~E~lk~~~~~~eAa~~Lir~ts--ed~-L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskag 84 (863)
+..||..+.|..+.++-..|.|.+|...|-.+.. .|. ++ .+..-+.|.+++. .|
T Consensus 43 ~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~-~~a~l~LA~~~~~----------------------~~ 99 (145)
T PF09976_consen 43 SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK-PLARLRLARILLQ----------------------QG 99 (145)
T ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH-HHHHHHHHHHHHH----------------------cC
Confidence 3468999999999999999999999999987664 334 43 3333344454442 33
Q ss_pred CcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHH
Q 002942 85 QINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHM 133 (863)
Q Consensus 85 qr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~ 133 (863)
+...|+.-+.. -.+..|. .-.+..+|..+...|+.+.|+..|
T Consensus 100 ~~d~Al~~L~~----~~~~~~~---~~~~~~~Gdi~~~~g~~~~A~~~y 141 (145)
T PF09976_consen 100 QYDEALATLQQ----IPDEAFK---ALAAELLGDIYLAQGDYDEARAAY 141 (145)
T ss_pred CHHHHHHHHHh----ccCcchH---HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33444444322 1223332 334556666666666666666554
No 34
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=80.54 E-value=26 Score=39.29 Aligned_cols=115 Identities=8% Similarity=-0.032 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcch-hhHHH-----H------HHHHHhhhhcc---CCCc-chhhHhHHHhhcc
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAV-----M------LEQASYCYLLS---KPPM-LHKYGFHLVLSGD 78 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~-L~SAL-----L------LEQAA~c~L~~---~ppm-~RKyAfhmVLAGh 78 (863)
+-...+.++...|.|.+|-..|-++-..+. -..+. + .++|-.+|-.+ .|.. ....+..+..-|.
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 345557777888888888888877764322 11111 0 12233333221 1111 1112222333455
Q ss_pred chhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 79 RYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 79 Ryskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
-|.+.|+...|+.+|.+++..... ....++.+|+.+...|++++|++.|.+
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~ 239 (389)
T PRK11788 189 QALARGDLDAARALLKKALAADPQ------CVRASILLGDLALAQGDYAAAIEALER 239 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHCcC------CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677889999999999999886533 124677889999999999999877655
No 35
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=80.23 E-value=15 Score=36.77 Aligned_cols=27 Identities=4% Similarity=-0.175 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHhHh
Q 002942 14 RCGLWWVEMLKARHQYKDAATVYFRIC 40 (863)
Q Consensus 14 R~all~~E~lk~~~~~~eAa~~Lir~t 40 (863)
+.-...+.++-..|.|.+|...+-++-
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l 58 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKAL 58 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444555556666666666655544
No 36
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=79.61 E-value=13 Score=38.63 Aligned_cols=63 Identities=8% Similarity=-0.043 Sum_probs=48.6
Q ss_pred hhhHhHHHhhccchhcCCC--cHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 67 HKYGFHLVLSGDRYKKCDQ--INHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 67 RKyAfhmVLAGhRyskagq--r~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
....+++-+|.-.|...|+ ..-|..+|.+|+..--+. -..++.||..++.+|++++|++++.+
T Consensus 105 ~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~------~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 105 ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE------VTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3556667777666667776 489999999999763322 24778999999999999999988755
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=79.07 E-value=4.1 Score=44.02 Aligned_cols=69 Identities=17% Similarity=0.242 Sum_probs=49.2
Q ss_pred hhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcC-------CCccchhh---------------------hHHHHHHH
Q 002942 67 HKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG-------STWSHIKD---------------------HVHFHIGQ 118 (863)
Q Consensus 67 RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~-------~~W~~~ed---------------------HI~~tLGr 118 (863)
..-+..++..|.-|.+.|+.+.|++||++|+...-+ -.|.+++. -+...+|.
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~ 222 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA 222 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 355677888889999999999999999999998765 23433311 14456677
Q ss_pred HHHHhCCHHHHHHHHHH
Q 002942 119 WYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 119 q~~~Lg~~~~Av~h~l~ 135 (863)
.+..+|+.+.|+.+|.+
T Consensus 223 ~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 223 AYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHT-HHHHHHHHHH
T ss_pred Hhccccccccccccccc
Confidence 78888888888877755
No 38
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=77.86 E-value=9 Score=33.23 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=40.6
Q ss_pred cCCCeEEEEEecCCccccCccEEEEEEEEEecCccccccEEEEecCCceEEe
Q 002942 364 KSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSI 415 (863)
Q Consensus 364 ~~~P~L~v~~~~~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~ 415 (863)
..-+.+.+.-..-+..+.-||...+.|+++|.|..++.++.+.-.-|.-+.|
T Consensus 21 ~~~~~~~~~k~~~~~~~~~Gd~v~ytitvtN~G~~~a~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 21 VAIPDLSITKTVNPSTANPGDTVTYTITVTNTGPAPATNVVVTDTLPAGLTF 72 (76)
T ss_pred cCCCCEEEEEecCCCcccCCCEEEEEEEEEECCCCeeEeEEEEEcCCCCCEE
Confidence 3445566655556888999999999999999999999999888666644433
No 39
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=76.55 E-value=16 Score=45.38 Aligned_cols=114 Identities=14% Similarity=0.049 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHH------------HHHHhhhhc--cCCCcchhhHhHHHhhcc
Q 002942 13 TRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVML------------EQASYCYLL--SKPPMLHKYGFHLVLSGD 78 (863)
Q Consensus 13 ~R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLL------------EQAA~c~L~--~~ppm~RKyAfhmVLAGh 78 (863)
..+-++.+++...+|.|.||...|-++...++-..+... |.|-.++=+ ...| ..+-++.+-|.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p---~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS---SSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC---CCHHHHHHHHH
Confidence 346688999999999999999999988865431111111 122111111 1223 23455556677
Q ss_pred chhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 79 RYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 79 Ryskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
-..+.|+...|+.||++++. .+. -..+....+|...-.+|+.++|+..|.+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~--~~p----~~~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSR--QHP----EFENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred HHHHhcchHHHHHHHHHHHh--cCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 78899999999999999996 332 2346888999999999999999877765
No 40
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=75.99 E-value=6 Score=32.78 Aligned_cols=48 Identities=19% Similarity=0.170 Sum_probs=39.9
Q ss_pred cCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 82 KCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 82 kagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+.|+...|++.|.++++.+-+ ...+.+.+|+.+...|++++|.+.|-+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD------NPEARLLLAQCYLKQGQYDEAEELLER 50 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT------SHHHHHHHHHHHHHTT-HHHHHHHHHC
T ss_pred hccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467889999999999998766 345788999999999999999987754
No 41
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=75.81 E-value=31 Score=35.99 Aligned_cols=53 Identities=21% Similarity=0.269 Sum_probs=34.0
Q ss_pred cchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHH
Q 002942 78 DRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHM 133 (863)
Q Consensus 78 hRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~ 133 (863)
.-|.+.|+...|+.-|..++..|.+..| ..-..+.+|+.+..+|+.++|+.++
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~a~~~l~~~~~~lg~~~~A~~~~ 226 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPA---TEEALARLVEAYLKLGLKDLAQDAA 226 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcc---hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3456667777777777777776665432 1234567777777777777777654
No 42
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=75.70 E-value=18 Score=42.20 Aligned_cols=83 Identities=11% Similarity=0.044 Sum_probs=55.3
Q ss_pred cCccEEEEEEE-EEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcc
Q 002942 381 YAGDLRHLVLE-LKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGIS 459 (863)
Q Consensus 381 l~GEi~~~~l~-L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~~~~ 459 (863)
..||...=.|. |.|.|+..|..=|.....+..+ ++. . ........|+- ..++
T Consensus 244 ~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~--~~~----------~--------------~~~~~~F~Fd~-~~gv 296 (426)
T PF14646_consen 244 HPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNF--GSL----------F--------------RAQDQRFYFDT-SSGV 296 (426)
T ss_pred ccCceeeEEEEEEecCCceEEEEEEEeccccccc--chh----------c--------------cccCCeEEEeC-CCCE
Confidence 66888888888 9999999887666655543111 100 0 00011234443 4678
Q ss_pred cCCCCeEEEEEEEEecCCceeEEEEEEEEee
Q 002942 460 IQGETPLLWPLWYRAAVPGKISLSITIYYEM 490 (863)
Q Consensus 460 L~pGes~~lPlwlra~~~G~~~l~lLfyYe~ 490 (863)
|.||+++.+++|+++..+|...=.|.+.-.+
T Consensus 297 ilPGe~~~~~~~F~s~~~Gif~E~W~L~t~P 327 (426)
T PF14646_consen 297 ILPGETRNFPFMFKSRKVGIFKERWELRTFP 327 (426)
T ss_pred ECCCceEEEEEEEeCCCceEEEEEEEEEEec
Confidence 9999999999999999998777666665433
No 43
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=75.32 E-value=17 Score=31.66 Aligned_cols=67 Identities=27% Similarity=0.344 Sum_probs=39.3
Q ss_pred ecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeee-EE
Q 002942 216 VAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD-IS 294 (863)
Q Consensus 216 vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~-i~ 294 (863)
..||.+.+.+.++|.-..++ .+++|.... +.+. .. ...... -.
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~--~~v~~~l~~-P~GW-~~--------------------------------~~~~~~~~~ 45 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPL--TNVSLSLSL-PEGW-TV--------------------------------SASPASVPS 45 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-B--SS-EEEEE---TTS-E-----------------------------------EEEEE--
T ss_pred CCCCEEEEEEEEEECCCCce--eeEEEEEeC-CCCc-cc--------------------------------cCCcccccc
Confidence 36999999999999887664 677776653 3221 10 001112 27
Q ss_pred ECCCceEEEEEEEEeCce---eEEEEE
Q 002942 295 LGGAETILVQLMVTPKVE---GILKIV 318 (863)
Q Consensus 295 L~p~etk~V~L~v~P~~~---G~L~I~ 318 (863)
|.|+++..+.+.|+|-.. |.+.|.
T Consensus 46 l~pG~s~~~~~~V~vp~~a~~G~y~v~ 72 (78)
T PF10633_consen 46 LPPGESVTVTFTVTVPADAAPGTYTVT 72 (78)
T ss_dssp B-TTSEEEEEEEEEE-TT--SEEEEEE
T ss_pred CCCCCEEEEEEEEECCCCCCCceEEEE
Confidence 999999999999999754 887664
No 44
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=75.09 E-value=30 Score=41.35 Aligned_cols=122 Identities=14% Similarity=0.138 Sum_probs=86.4
Q ss_pred HHHHHHH-HHHHHHhccchHHHHHHHHhH-------hCcchhhHHHHHHHHHhhhhccCCCcchhhHh------------
Q 002942 12 ATRCGLW-WVEMLKARHQYKDAATVYFRI-------CGEEPLHSAVMLEQASYCYLLSKPPMLHKYGF------------ 71 (863)
Q Consensus 12 A~R~all-~~E~lk~~~~~~eAa~~Lir~-------tsed~L~SALLLEQAA~c~L~~~ppm~RKyAf------------ 71 (863)
+++.++. .+.+|...+.|++|...|-++ -+++.-..|..|+--|..|. +-..++.+-.
T Consensus 239 ~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~--~~GKf~EA~~~~e~Al~I~~~~ 316 (508)
T KOG1840|consen 239 VVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY--KQGKFAEAEEYCERALEIYEKL 316 (508)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHHHh
Confidence 3444444 788899999988888777653 35776678888888887664 3334444333
Q ss_pred ----------HHHhhccchhcCCCcHHHHHHHHHHHhhhcCCC--ccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 72 ----------HLVLSGDRYKKCDQINHAIRTYRSAVSVYKGST--WSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 72 ----------hmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~--W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.+--.|..|..-+....|..-|+.|+.+|.... =....-++.-.||+.++++|++++|...+-.
T Consensus 317 ~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 317 LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKK 392 (508)
T ss_pred hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 344456778888889999999999999998321 1113345788999999999999999865533
No 45
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=74.68 E-value=1.4e+02 Score=35.47 Aligned_cols=132 Identities=15% Similarity=0.170 Sum_probs=88.7
Q ss_pred cCCccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeec
Q 002942 375 PLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSF 454 (863)
Q Consensus 375 ~~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~ 454 (863)
..|..++-|+...+++.|+|.|..+++++.+...+|.-.. +.-.. + +..
T Consensus 158 ~~~~~i~~G~~~~l~~~I~N~G~~~~~~v~l~~~~~~~~~-~~i~~----------------------~-----~~~--- 206 (500)
T COG1361 158 SSPEAIIPGETNTLTLTIKNPGEGPAKNVSLSLESPTSYL-GPIYS----------------------A-----NDT--- 206 (500)
T ss_pred cCccccCCCCccEEEEEEEeCCcccccceEEEEeCCccee-ccccc----------------------c-----ccc---
Confidence 3578899999999999999999999999999987742110 00000 0 000
Q ss_pred CCCcccCCCCeEEEEEEEEec---CCceeEEEEEEEEeeCCCCCcceEEEEEEEEEEEEeceeeEEEEE-Eee--ccCCc
Q 002942 455 PEGISIQGETPLLWPLWYRAA---VPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQI-SPW--SSRLQ 528 (863)
Q Consensus 455 P~~~~L~pGes~~lPlwlra~---~~G~~~l~lLfyYe~~~~~~~~~~R~~R~~~~i~V~pSL~vs~~~-~~s--~s~~~ 528 (863)
+--..|.||++..+.+-+-+. ..|...+++.+.|...+. .-+.-.....+.+.+...+.++. ... .-...
T Consensus 207 ~~i~~l~p~es~~v~f~v~~~~~a~~g~y~i~i~i~~~~~~~----~~~~~~~~~~i~~~~~~~~~is~v~~~p~~~~~~ 282 (500)
T COG1361 207 PYIGALGPGESVNVTFSVYAGSNAEPGTYTINLEITYKDEEG----SVKSPTITIGIVVVGEPKLDISNVKFDPGVIPLG 282 (500)
T ss_pred eeeeeeCCCceEEEEEEEEeecCCCCccEEEEEEEEEecCCc----cccccceEEEEecCCceeEEEEEEEecCCeeccc
Confidence 012359999999999999877 589999999999998442 23344555666677776666643 222 22234
Q ss_pred eEEEEEEEEeCCC
Q 002942 529 QYLVRMDVVNQTS 541 (863)
Q Consensus 529 ~~ll~v~V~N~~~ 541 (863)
...+.+.+.|.+.
T Consensus 283 ~~~i~~~~~~~~~ 295 (500)
T COG1361 283 GVSIEITITIENS 295 (500)
T ss_pred eeEEEEEEEEEec
Confidence 5666666666544
No 46
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=73.70 E-value=34 Score=34.11 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=9.2
Q ss_pred HHHHHHhccchHHHHHHHHh
Q 002942 19 WVEMLKARHQYKDAATVYFR 38 (863)
Q Consensus 19 ~~E~lk~~~~~~eAa~~Lir 38 (863)
.+.++...|.+++|...+-+
T Consensus 71 la~~~~~~~~~~~A~~~~~~ 90 (234)
T TIGR02521 71 LALYYQQLGELEKAEDSFRR 90 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 34444444555554444433
No 47
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=73.02 E-value=16 Score=40.39 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=49.4
Q ss_pred HHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 73 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 73 mVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..+-||-|...|+.+.|+++|.+++..+... ....-|.++.+|+.+...|++++|++.+-+
T Consensus 151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~--~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 151 VHAVAHVLEMQGRFKEGIAFMESWRDTWDCS--SMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhccCCC--cchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444999999999999999999999876541 123346788999999999999999988755
No 48
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=72.65 E-value=12 Score=32.02 Aligned_cols=69 Identities=16% Similarity=0.327 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHhHh------CcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCC
Q 002942 11 NATRCGLWWVEMLKARHQYKDAATVYFRIC------GEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCD 84 (863)
Q Consensus 11 ~A~R~all~~E~lk~~~~~~eAa~~Lir~t------sed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskag 84 (863)
...++-...+.++...|.|.+|-..|-++- +++....|..+-. .|.-|.+.|
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~----------------------lg~~~~~~g 60 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNN----------------------LGECYYRLG 60 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHH----------------------HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH----------------------HHHHHHHcC
Confidence 345677888999999999999887665432 1222223444444 445555788
Q ss_pred CcHHHHHHHHHHHhhhc
Q 002942 85 QINHAIRTYRSAVSVYK 101 (863)
Q Consensus 85 qr~hAlRCY~~A~~vY~ 101 (863)
..+-|+.+|.+|+.+|+
T Consensus 61 ~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 61 DYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhhc
Confidence 89999999999999986
No 49
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=70.71 E-value=68 Score=35.58 Aligned_cols=97 Identities=16% Similarity=0.342 Sum_probs=59.9
Q ss_pred ccccCccEEEEEEEEEecCccccc--cEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecC
Q 002942 378 ERAYAGDLRHLVLELKNQSDFSVK--NLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFP 455 (863)
Q Consensus 378 ~~ll~GEi~~~~l~L~N~g~~pl~--~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P 455 (863)
..+..|+..++.|.|+|.|..++. .|.=.+..|. + +...+. |++. .+
T Consensus 93 ~~l~aG~~~~~LvgftN~g~~~~~V~~i~aSl~~p~--------d----~~~~iq------------NfTa-------~~ 141 (285)
T PF03896_consen 93 KKLPAGEPVKFLVGFTNKGSEPFTVESIEASLRYPQ--------D----YSYYIQ------------NFTA-------VR 141 (285)
T ss_pred ccccCCCeEEEEEEEEeCCCCCEEEEEEeeeecCcc--------c----cceEEE------------eecc-------cc
Confidence 568999999999999999985432 2211111220 0 000000 1111 12
Q ss_pred CCcccCCCCeEEEEEEEEec---CCceeEEEEEEEEeeCCCCCcceEEEEEEEEEE
Q 002942 456 EGISIQGETPLLWPLWYRAA---VPGKISLSITIYYEMGDVSSVIKYRLLRMHYNL 508 (863)
Q Consensus 456 ~~~~L~pGes~~lPlwlra~---~~G~~~l~lLfyYe~~~~~~~~~~R~~R~~~~i 508 (863)
-+..+.||+..++|-.+... .++...|.+.++|+..++. .|...=+...|
T Consensus 142 y~~~V~pg~~aT~~YsF~~~~~l~pr~f~L~i~l~y~d~~g~---~y~~~~fN~TV 194 (285)
T PF03896_consen 142 YNREVPPGEEATFPYSFTPSEELAPRPFGLVINLIYEDSDGN---QYQVTVFNGTV 194 (285)
T ss_pred cCcccCCCCeEEEEEEEecchhcCCcceEEEEEEEEEeCCCC---EEEEEEecceE
Confidence 25679999999999999874 5778899999999865432 35444344333
No 50
>PF13584 BatD: Oxygen tolerance
Probab=70.42 E-value=2.3e+02 Score=33.46 Aligned_cols=101 Identities=14% Similarity=0.117 Sum_probs=56.3
Q ss_pred EEECCCceEEEE---EEEEeCceeEEEEEEEEEEecccee-eEEEeecchhhhhhccccccccCCCCCceEEEEe--cC-
Q 002942 293 ISLGGAETILVQ---LMVTPKVEGILKIVGVRWRLSGSLV-GVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVI--KS- 365 (863)
Q Consensus 293 i~L~p~etk~V~---L~v~P~~~G~L~I~Gv~~~L~g~v~-g~~~F~i~g~rl~~tK~kr~~~~~pd~~L~~~V~--~~- 365 (863)
..+.+.....+. ..++|.++|.|.|....+++.-... +... ..|.. ..+.++..... ..+.++|. |.
T Consensus 187 ~~i~G~~y~~~~~~~~~l~P~ksG~l~I~~~~~~~~~~~~~~~~~--~fg~~--~~~~~~~~~~s--~~~~i~V~plP~~ 260 (484)
T PF13584_consen 187 ERINGRRYRVIELRRYALFPQKSGTLTIPPATFEVTVSDPSGRRD--FFGGN--FGRSRPVSISS--EPLTITVKPLPAE 260 (484)
T ss_pred EEECCEEEEEEEEEEEEEEeCCceeEEecCEEEEEEEecccCccC--ccccc--cccceeEEecC--CCeEEEeccCCcc
Confidence 456666555555 6799999999999998888653211 1111 12211 01111112222 23444443 33
Q ss_pred ------CCe---EEEEEecCCccccCccEEEEEEEEEecCccc
Q 002942 366 ------LPK---LEGLIHPLPERAYAGDLRHLVLELKNQSDFS 399 (863)
Q Consensus 366 ------~P~---L~v~~~~~P~~ll~GEi~~~~l~L~N~g~~p 399 (863)
.|. +++...--|..+-.||....+|+|+=.|..+
T Consensus 261 ~~p~~f~~aVg~f~l~~~~~~~~~~~Ge~vt~ti~i~g~Gn~~ 303 (484)
T PF13584_consen 261 GAPADFSGAVGNFSLSQSWDPTEVKVGEPVTRTITISGEGNLP 303 (484)
T ss_pred cCCCCcccceeEEEEEEEcCcccccCCCeEEEEEEEEEEcchh
Confidence 122 2333222267899999999999998777644
No 51
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=70.04 E-value=36 Score=44.84 Aligned_cols=55 Identities=24% Similarity=0.157 Sum_probs=46.8
Q ss_pred hhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 75 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 75 LAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+.|..|...|+...|+.+|++|+..+-+. ..+++.||..+..+|++++|+.+|.+
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~------~~a~~~Lg~~~~~~g~~~eA~~~l~~ 328 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKD------SEALGALGQAYSQQGDRARAVAQFEK 328 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34778888999999999999999976432 36789999999999999999988765
No 52
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=69.84 E-value=37 Score=41.69 Aligned_cols=111 Identities=15% Similarity=0.016 Sum_probs=61.8
Q ss_pred HHHHHHHHhccchHHHHHHHHhHhCcch--hhHHHH----------HHHHHhhhhccCCCcchhhHhHHHhhccchhcCC
Q 002942 17 LWWVEMLKARHQYKDAATVYFRICGEEP--LHSAVM----------LEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCD 84 (863)
Q Consensus 17 ll~~E~lk~~~~~~eAa~~Lir~tsed~--L~SALL----------LEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskag 84 (863)
+..+.++-..|.|.+|...|-++..... -..-.. .+.|...+-...+..--..+.-+.+.|..|.+.|
T Consensus 60 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (899)
T TIGR02917 60 FLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLG 139 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcC
Confidence 3455666667777777777666554321 111011 1222222211111111223344556788888899
Q ss_pred CcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHH
Q 002942 85 QINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHM 133 (863)
Q Consensus 85 qr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~ 133 (863)
+..-|+.+|.+|+....... ...+.+|+.+...|+++.|++.+
T Consensus 140 ~~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~ 182 (899)
T TIGR02917 140 QLELAQKSYEQALAIDPRSL------YAKLGLAQLALAENRFDEARALI 182 (899)
T ss_pred CHHHHHHHHHHHHhcCCCCh------hhHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999987654322 24566666677777777766554
No 53
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=68.76 E-value=23 Score=35.41 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=35.9
Q ss_pred HHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccch-hhhHHHHHHHHHHHhCCHHHHHHHH
Q 002942 73 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHI-KDHVHFHIGQWYAVLGMHDIAVAHM 133 (863)
Q Consensus 73 mVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~-edHI~~tLGrq~~~Lg~~~~Av~h~ 133 (863)
+...|.-|.+.|+...|+.+|.+|+.......+.+. .-.+++.+|+.....++.+.|+..+
T Consensus 75 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~ 136 (172)
T PRK02603 75 LYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALF 136 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHH
Confidence 345577778899999999999999998654322110 0122333333334444555555443
No 54
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=68.75 E-value=73 Score=28.24 Aligned_cols=67 Identities=30% Similarity=0.357 Sum_probs=44.0
Q ss_pred ceeecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeee
Q 002942 213 NICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 292 (863)
Q Consensus 213 ~~~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~ 292 (863)
.....|+++.|.+.++|-=... ..++.+.+..... . .....
T Consensus 13 ~~~~~g~~~~i~~~V~N~G~~~--~~~~~v~~~~~~~-------------------~------------------~~~~~ 53 (101)
T PF07705_consen 13 SNVVPGEPVTITVTVKNNGTAD--AENVTVRLYLDGN-------------------S------------------VSTVT 53 (101)
T ss_dssp SEEETTSEEEEEEEEEE-SSS---BEEEEEEEEETTE-------------------E------------------EEEEE
T ss_pred CcccCCCEEEEEEEEEECCCCC--CCCEEEEEEECCc-------------------e------------------eccEE
Confidence 4566899999999999964444 5566555432210 0 01235
Q ss_pred E-EECCCceEEEEEEEEeCceeEEEEE
Q 002942 293 I-SLGGAETILVQLMVTPKVEGILKIV 318 (863)
Q Consensus 293 i-~L~p~etk~V~L~v~P~~~G~L~I~ 318 (863)
| .|+|++++++.+.+.+..+|.+.|.
T Consensus 54 i~~L~~g~~~~v~~~~~~~~~G~~~i~ 80 (101)
T PF07705_consen 54 IPSLAPGESETVTFTWTPPSPGSYTIR 80 (101)
T ss_dssp ESEB-TTEEEEEEEEEE-SS-CEEEEE
T ss_pred ECCcCCCcEEEEEEEEEeCCCCeEEEE
Confidence 6 7999999999999999999988865
No 55
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=68.11 E-value=16 Score=32.79 Aligned_cols=72 Identities=24% Similarity=0.344 Sum_probs=41.5
Q ss_pred EeEEEEEEeCCCccEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCccccccCCccCccCc
Q 002942 708 VNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSP 787 (863)
Q Consensus 708 vpv~l~l~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 787 (863)
|.++|++.|.++..+.+.+.+... =|+++. +..|.-+
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~-------------------------------~D~~v~-d~~g~~v----------- 38 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQR-------------------------------YDFVVK-DKEGKEV----------- 38 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS---------------------------------EEEEEE--TT--EE-----------
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCE-------------------------------EEEEEE-CCCCCEE-----------
Confidence 679999999999999988875432 233333 2223322
Q ss_pred eEEec-----cccceEEeCCCceeEEEeEEEEec--ceeeec
Q 002942 788 FIWSG-----SSASSVRLQPMSTTDIAMKVCLFS--PGTYDL 822 (863)
Q Consensus 788 f~W~g-----~~~~~~~l~p~~~~~~~L~~~~~~--~GvYdl 822 (863)
|-|+. +--....|+|||+....-.+--.. ||.|-|
T Consensus 39 wrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 39 WRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 23332 344577899999999998887777 898864
No 56
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=67.75 E-value=23 Score=43.11 Aligned_cols=113 Identities=11% Similarity=-0.012 Sum_probs=71.7
Q ss_pred HHHHHHHHhccchHHHHHHHHhHhCcch-------hhHHHH-----HHHHHhhhhc---cCC---CcchhhHhHHHhhcc
Q 002942 17 LWWVEMLKARHQYKDAATVYFRICGEEP-------LHSAVM-----LEQASYCYLL---SKP---PMLHKYGFHLVLSGD 78 (863)
Q Consensus 17 ll~~E~lk~~~~~~eAa~~Lir~tsed~-------L~SALL-----LEQAA~c~L~---~~p---pm~RKyAfhmVLAGh 78 (863)
+..+.++...|.|.+|-..|-++-...+ ..+-++ .+.|--+|-+ ..| +.....+..+-.|+-
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 4556778888999988888776543211 111111 1233333322 122 222233344455566
Q ss_pred chhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 79 RYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 79 Ryskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
-|...|....|+.+|.+|+.+.-.. ...+..||+.+..+|++++|++.|-+
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~------~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPEC------DIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 6776789999999999999874222 23577899999999999999988755
No 57
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=67.47 E-value=29 Score=38.94 Aligned_cols=114 Identities=13% Similarity=0.065 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHH------------HHhhhhc--cCCCcc--hhhHhHHHhhcc
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQ------------ASYCYLL--SKPPML--HKYGFHLVLSGD 78 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQ------------AA~c~L~--~~ppm~--RKyAfhmVLAGh 78 (863)
..+..+-++...|.+++|...|-++-..++--....+.. |-..|-. ..|+.. .+.. -+..-|.
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~-~~~~La~ 115 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLL-ALQELGQ 115 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHHH
Confidence 344445566677889999888888876553001112222 2211111 011111 1111 2234477
Q ss_pred chhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 79 RYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 79 Ryskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
-|.+.|....|+.+|.+++..-. -..-....++..+...|++++|+..+..
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGD------FAEGALQQLLEIYQQEKDWQKAIDVAER 166 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCc------chHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 78899999999999999986411 1123566788888888999988877654
No 58
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=67.17 E-value=19 Score=38.04 Aligned_cols=84 Identities=18% Similarity=0.117 Sum_probs=54.6
Q ss_pred HHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcC-------CCccchhhhHHHHHHHHHHHh
Q 002942 51 LEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG-------STWSHIKDHVHFHIGQWYAVL 123 (863)
Q Consensus 51 LEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~-------~~W~~~edHI~~tLGrq~~~L 123 (863)
.-.|.+|+-..+.+.. +-|.=++-.+=-|...|......+.+++|+..|+. ..=..-+.-|.|-||.++..+
T Consensus 100 YkLAll~~~~~~~~~s-~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrl 178 (214)
T PF09986_consen 100 YKLALLCAQIKKEKPS-KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRL 178 (214)
T ss_pred HHHHHHHHHHhCCCHH-HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHh
Confidence 3344445443333333 44444445555566666677777777777766653 222334556899999999999
Q ss_pred CCHHHHHHHHHH
Q 002942 124 GMHDIAVAHMLE 135 (863)
Q Consensus 124 g~~~~Av~h~l~ 135 (863)
|+.++|++.|-+
T Consensus 179 g~~~eA~~~fs~ 190 (214)
T PF09986_consen 179 GNYDEAKRWFSR 190 (214)
T ss_pred CCHHHHHHHHHH
Confidence 999999999876
No 59
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=66.81 E-value=7.7 Score=45.13 Aligned_cols=56 Identities=20% Similarity=0.308 Sum_probs=47.1
Q ss_pred HhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 74 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 74 VLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|--|.-|+|-++..-|+.||++|+.+=+ .+.-+...||+.+-.|++..+|...|..
T Consensus 436 ~aLG~CY~kl~~~~eAiKCykrai~~~d------te~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 436 VALGECYEKLNRLEEAIKCYKRAILLGD------TEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhccc------cchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4458899999999999999999997632 3667899999999999999999876644
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=66.61 E-value=37 Score=40.91 Aligned_cols=48 Identities=19% Similarity=0.072 Sum_probs=32.5
Q ss_pred CCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 83 CDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 83 agqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.|+..-|+.+|++++....... -..++.+|..+..+|++++|.+++.+
T Consensus 419 ~g~~eeA~~~~~~~l~~~~p~~-----~~~~~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 419 HTGIDDAIRLGDELRSQHLQDN-----PILLSMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred ccCHHHHHHHHHHHHHhccccC-----HHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5667778888887775431111 12456788888888999999877754
No 61
>PF13584 BatD: Oxygen tolerance
Probab=66.16 E-value=1.1e+02 Score=36.09 Aligned_cols=87 Identities=17% Similarity=0.223 Sum_probs=49.7
Q ss_pred ceEEEEEEEEeCceeEEEEEEEEEEeccceeeEEEeecchhhhhhccccccccCCCCCceEEEEecCCCeEEEEEecCCc
Q 002942 299 ETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPE 378 (863)
Q Consensus 299 etk~V~L~v~P~~~G~L~I~Gv~~~L~g~v~g~~~F~i~g~rl~~tK~kr~~~~~pd~~L~~~V~~~~P~L~v~~~~~P~ 378 (863)
......+.+.|+++|.++|-.+.+++.|...-...+.+. -.+....... + .........|++.++ +.
T Consensus 71 ~~~~~~~~l~p~~~G~~~IP~~~v~v~Gk~~~S~pi~i~-----V~~~~~~~~~-~-----~~~~~~~~~l~~~v~--~~ 137 (484)
T PF13584_consen 71 SSTTYTYTLQPKKTGTFTIPPFTVEVDGKTYKSQPITIE-----VSKASQSPSQ-P-----PSNADDDVFLEAEVS--KK 137 (484)
T ss_pred EEEEEEEEEEecccceEEEceEEEEECCEEEeecCEEEE-----EEecccCCcc-c-----cccccccEEEEEEeC--CC
Confidence 567888999999999999999999988832111122211 0000000000 0 000111223333333 56
Q ss_pred cccCccEEEEEEEEEecCcc
Q 002942 379 RAYAGDLRHLVLELKNQSDF 398 (863)
Q Consensus 379 ~ll~GEi~~~~l~L~N~g~~ 398 (863)
.+|.||-..++++|.=....
T Consensus 138 ~~Yvge~v~lt~~ly~~~~~ 157 (484)
T PF13584_consen 138 SVYVGEPVILTLRLYTRNNF 157 (484)
T ss_pred ceecCCcEEEEEEEEEecCc
Confidence 79999999999988765543
No 62
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.09 E-value=22 Score=37.26 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=51.0
Q ss_pred cEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcccCCC
Q 002942 384 DLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGE 463 (863)
Q Consensus 384 Ei~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~~~~L~pG 463 (863)
+.....++|+|....++.+ +|+++.|..+++. |..+.|.||
T Consensus 25 ~~~~~~l~l~N~t~~~vaF-KvktT~p~~y~Vr--------------------------------------P~~G~i~p~ 65 (218)
T KOG0439|consen 25 EQVKCSLTLKNPTKLRVAF-KVKTTAPKLYCVR--------------------------------------PNGGVIDPG 65 (218)
T ss_pred ceEEEEEEEecCCCCceEE-EEEcCCCCeEEEc--------------------------------------CCcceECCC
Confidence 5789999999997776665 7888888777543 234679999
Q ss_pred CeEEEEEEEEec--CCcee--EEEEEEEEeeCC
Q 002942 464 TPLLWPLWYRAA--VPGKI--SLSITIYYEMGD 492 (863)
Q Consensus 464 es~~lPlwlra~--~~G~~--~l~lLfyYe~~~ 492 (863)
++.++.++.++. .+... .-+|+|+|-...
T Consensus 66 ~t~~i~v~~q~~~~~P~d~~~r~kF~v~~~~~~ 98 (218)
T KOG0439|consen 66 STVEIEVTHQPFEKSPPDFKSRHKFLIQSLKAP 98 (218)
T ss_pred CcEEEEEEeccCccCchhhcccceEEEEEEecC
Confidence 999999988883 23333 346777775544
No 63
>PRK11189 lipoprotein NlpI; Provisional
Probab=65.68 E-value=41 Score=37.04 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=32.8
Q ss_pred hhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 75 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 75 LAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.-|.-|...|+...|+.+|.+|+.+.-+. ...++.+|..++..|++++|++.|.+
T Consensus 103 ~lg~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~g~~~eA~~~~~~ 157 (296)
T PRK11189 103 YLGIYLTQAGNFDAAYEAFDSVLELDPTY------NYAYLNRGIALYYGGRYELAQDDLLA 157 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34556666677777777777777653221 22445566666666777777655543
No 64
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=65.06 E-value=10 Score=26.73 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 112 VHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 112 I~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+++.+|..++.+|++++|+++|.+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~ 26 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEK 26 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 578999999999999999998865
No 65
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=64.66 E-value=54 Score=35.78 Aligned_cols=97 Identities=14% Similarity=0.065 Sum_probs=66.6
Q ss_pred HHHHHHHHHH-HhccchHHHHHHHHhHhCc--chhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHH
Q 002942 14 RCGLWWVEML-KARHQYKDAATVYFRICGE--EPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAI 90 (863)
Q Consensus 14 R~all~~E~l-k~~~~~~eAa~~Lir~tse--d~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAl 90 (863)
...+-.+..+ ...|.|.+|...|-.+-.. ++-.++-.+. .-|.-|.+.|+.+.|+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y----------------------~LG~~y~~~g~~~~A~ 200 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANY----------------------WLGQLNYNKGKKDDAA 200 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHH----------------------HHHHHHHHcCCHHHHH
Confidence 4555555544 4457888888776655532 2211122222 3344555778999999
Q ss_pred HHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 91 RTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 91 RCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..|+.++.-|-+..| .....+.+|..+..+|+.+.|++.|-.
T Consensus 201 ~~f~~vv~~yP~s~~---~~dAl~klg~~~~~~g~~~~A~~~~~~ 242 (263)
T PRK10803 201 YYFASVVKNYPKSPK---AADAMFKVGVIMQDKGDTAKAKAVYQQ 242 (263)
T ss_pred HHHHHHHHHCCCCcc---hhHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999988876 445678899999999999999877643
No 66
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=64.60 E-value=51 Score=40.69 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=34.3
Q ss_pred ccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 77 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 77 GhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.-|.+.|+...|+.+|++|+...-. ...+++.+|+.+..+|++++|+++|.+
T Consensus 291 g~~l~~~g~~~eA~~~l~~al~l~P~------~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 291 ADALIRTGQNEKAIPLLQQSLATHPD------LPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55666667777777777777765332 123556677777777777777766644
No 67
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=63.90 E-value=22 Score=41.62 Aligned_cols=69 Identities=23% Similarity=0.390 Sum_probs=51.4
Q ss_pred hhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcC--CCccch--------------------------hhhHHHHHHH
Q 002942 67 HKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG--STWSHI--------------------------KDHVHFHIGQ 118 (863)
Q Consensus 67 RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~--~~W~~~--------------------------edHI~~tLGr 118 (863)
+||+---+|-||-|-.-.--.-|+-||++|..|-.. |.|-.+ +.-+-.+||.
T Consensus 361 p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~ 440 (559)
T KOG1155|consen 361 PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGE 440 (559)
T ss_pred cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 467777788888888888888889999999887543 666332 1225668888
Q ss_pred HHHHhCCHHHHHHHHHH
Q 002942 119 WYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 119 q~~~Lg~~~~Av~h~l~ 135 (863)
.|..++++++|++.|-+
T Consensus 441 CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 441 CYEKLNRLEEAIKCYKR 457 (559)
T ss_pred HHHHhccHHHHHHHHHH
Confidence 88888888888887755
No 68
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=62.88 E-value=42 Score=40.80 Aligned_cols=113 Identities=10% Similarity=-0.047 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHhHhCcch------hhHHHHH------HHHHhhhhcc--CCCcchhhHhHHHhhccc
Q 002942 14 RCGLWWVEMLKARHQYKDAATVYFRICGEEP------LHSAVML------EQASYCYLLS--KPPMLHKYGFHLVLSGDR 79 (863)
Q Consensus 14 R~all~~E~lk~~~~~~eAa~~Lir~tsed~------L~SALLL------EQAA~c~L~~--~ppm~RKyAfhmVLAGhR 79 (863)
.+-.+.+.++...|.|.+|-..|-++-..++ +.-|.++ +.|..+|-.+ ..|. .+--+..-|.-
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~lg~~ 408 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE---DPDIYYHRAQL 408 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Confidence 3445556677778889988888877654332 1112211 2233333221 1121 22233445667
Q ss_pred hhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 80 YKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 80 yskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|...|+...|++||.+|+.+.-... ..++.+|..++.+|++++|+.+|.+
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~~~------~~~~~la~~~~~~g~~~eA~~~~~~ 458 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPDFI------FSHIQLGVTQYKEGSIASSMATFRR 458 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCccCH------HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7888899999999999988754322 3456677777777777777766544
No 69
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=61.25 E-value=80 Score=28.73 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=52.0
Q ss_pred ccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcccCC
Q 002942 383 GDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQG 462 (863)
Q Consensus 383 GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~~~~L~p 462 (863)
+...++.+.+.|.+..++.++.+.+.-|.++.+--. .+.+..|.|
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~-----------------------------------~~s~~~l~p 61 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQ-----------------------------------PPSSPTLPP 61 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEc-----------------------------------CCCCCccCC
Confidence 445789999999999999999998887755432110 111345888
Q ss_pred CCeEEEEEEEEecCCceeEEEEEEEEee
Q 002942 463 ETPLLWPLWYRAAVPGKISLSITIYYEM 490 (863)
Q Consensus 463 Ges~~lPlwlra~~~G~~~l~lLfyYe~ 490 (863)
|+.++--+.+.++.++...+++-+-|.-
T Consensus 62 ~~~i~q~~~i~~~~~~~~~~~~~vsy~~ 89 (104)
T smart00809 62 GGQITQVLKVENPGKFPLRLRLRLSYLL 89 (104)
T ss_pred CCCEEEEEEEECCCCCCEEEEEEEEEEE
Confidence 8888888999988766666666555543
No 70
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=60.81 E-value=18 Score=30.31 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=42.4
Q ss_pred cchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 78 DRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 78 hRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+.|-..++...|+.|+.+++...-. .-.+++..|..++.+|+++.|++.|-.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~l~~ 54 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD------DPELWLQRARCLFQLGRYEEALEDLER 54 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc------cchhhHHHHHHHHHhccHHHHHHHHHH
Confidence 4567788899999999999988544 234678899999999999999877644
No 71
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=60.79 E-value=15 Score=30.17 Aligned_cols=53 Identities=19% Similarity=0.323 Sum_probs=42.5
Q ss_pred ccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 77 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 77 GhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.-|...|....|+.+|.+++..+.... .+++.+|..+...++++.|+++|..
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~ 59 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDYEK 59 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445557888899999999998865432 5678899999999999999998855
No 72
>PF12742 Gryzun-like: Gryzun, putative Golgi trafficking
Probab=60.66 E-value=19 Score=30.08 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=38.3
Q ss_pred cCceEEeccccceEEeCCCceeEEEeEEEEecceeeecCCcE
Q 002942 785 VSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYA 826 (863)
Q Consensus 785 ~~~f~W~g~~~~~~~l~p~~~~~~~L~~~~~~~GvYdl~~~~ 826 (863)
+..|+-+|-.+.+.++-|++..+++-+-.=+.+|-|-|=..+
T Consensus 15 n~~F~v~G~~~~~~~~~~~~~~~i~~~Fipl~aG~~~LP~I~ 56 (57)
T PF12742_consen 15 NDNFIVCGPKKMNFHMWPGQKFEIPYNFIPLTAGFLKLPKIN 56 (57)
T ss_pred CCceEEEccceeEEEEccCceEEEEEEEEEeehheecCcccc
Confidence 778999999999999999999999999999999999885543
No 73
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=60.25 E-value=20 Score=29.34 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=31.8
Q ss_pred CccccCccEEEEEEEEEecCccccccEEEEecCCceEEe
Q 002942 377 PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSI 415 (863)
Q Consensus 377 P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~ 415 (863)
+..+.-|+....+|+++|.|..++.++.+.=.-|.-+.|
T Consensus 5 ~~~~~~Gd~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~ 43 (53)
T TIGR01451 5 KTVATIGDTITYTITVTNNGNVPATNVVVTDILPSGTTF 43 (53)
T ss_pred ccccCCCCEEEEEEEEEECCCCceEeEEEEEcCCCCCEE
Confidence 345678999999999999999999998888666654444
No 74
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=59.94 E-value=22 Score=35.29 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=44.4
Q ss_pred ccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 77 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 77 GhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|..|...|+...|+.+|++|+.+..+.. ..-.+++.||..+..+|++++|++.+.+
T Consensus 42 g~~~~~~g~~~~A~~~~~~al~l~~~~~---~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 42 GMSAQSEGEYAEALQNYYEAMRLEIDPY---DRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5566677999999999999998854321 1124789999999999999999988755
No 75
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=59.51 E-value=50 Score=32.70 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=30.0
Q ss_pred eEEECCCceEEEEEEEEeCceeEEEEEEEEEEecc
Q 002942 292 DISLGGAETILVQLMVTPKVEGILKIVGVRWRLSG 326 (863)
Q Consensus 292 ~i~L~p~etk~V~L~v~P~~~G~L~I~Gv~~~L~g 326 (863)
.|.+..++..++.|.+.|.++|.|..-.|..+-..
T Consensus 80 ~f~~~~~~~~~~~l~LIPL~~G~L~lP~V~i~~~~ 114 (147)
T PF12584_consen 80 VFSLSDGSEHEIPLTLIPLRAGYLPLPKVEIRPYD 114 (147)
T ss_pred eEEecCCCeEEEEEEEEecccceecCCEEEEEecc
Confidence 57778899999999999999999998888776443
No 76
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=59.44 E-value=59 Score=39.91 Aligned_cols=111 Identities=15% Similarity=0.061 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcch--hh----HHHHH------HHHHhhhhcc--CCCcchhhHhHHHhhccch
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEP--LH----SAVML------EQASYCYLLS--KPPMLHKYGFHLVLSGDRY 80 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~--L~----SALLL------EQAA~c~L~~--~ppm~RKyAfhmVLAGhRy 80 (863)
.....+.++...|.+.+|...|-++-..++ .. -|.++ ++|-.+|-++ ..| +....+...|.-|
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~ 814 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP---DNAVVLNNLAWLY 814 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHH
Confidence 344567788888888888887777654321 11 11111 1222222211 112 1222333446677
Q ss_pred hcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 81 KKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 81 skagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.+.|+ ..|+.-|.+++....+. ..+...+|..+..+|++++|+++|-.
T Consensus 815 ~~~~~-~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~A~~~~~~ 862 (899)
T TIGR02917 815 LELKD-PRALEYAEKALKLAPNI------PAILDTLGWLLVEKGEADRALPLLRK 862 (899)
T ss_pred HhcCc-HHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777 66888888888764432 23556778888888888888776644
No 77
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=59.09 E-value=28 Score=43.60 Aligned_cols=84 Identities=21% Similarity=0.396 Sum_probs=65.7
Q ss_pred HHHHHHhccchHHHHHHHHhHhCcch-hhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHHH
Q 002942 19 WVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAV 97 (863)
Q Consensus 19 ~~E~lk~~~~~~eAa~~Lir~tsed~-L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~ 97 (863)
.++.|...|.|++|-..|..+++.+. =+.+|.+ --|.||. .-|-..+|+-||..|+
T Consensus 420 ~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~-~~a~c~~----------------------~l~e~e~A~e~y~kvl 476 (895)
T KOG2076|consen 420 LADALTNIGKYKEALRLLSPITNREGYQNAFVWY-KLARCYM----------------------ELGEYEEAIEFYEKVL 476 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHhcCccccchhhhH-HHHHHHH----------------------HHhhHHHHHHHHHHHH
Confidence 57788899999999999999998775 3344444 4455664 4466899999999999
Q ss_pred hhhcCCCccchhhhH--HHHHHHHHHHhCCHHHHHHHH
Q 002942 98 SVYKGSTWSHIKDHV--HFHIGQWYAVLGMHDIAVAHM 133 (863)
Q Consensus 98 ~vY~~~~W~~~edHI--~~tLGrq~~~Lg~~~~Av~h~ 133 (863)
.+ +-||+ -++|+-.+..+|+++.|+.-+
T Consensus 477 ~~--------~p~~~D~Ri~Lasl~~~~g~~EkalEtL 506 (895)
T KOG2076|consen 477 IL--------APDNLDARITLASLYQQLGNHEKALETL 506 (895)
T ss_pred hc--------CCCchhhhhhHHHHHHhcCCHHHHHHHH
Confidence 64 55664 578899999999999998766
No 78
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=58.31 E-value=57 Score=29.20 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=38.2
Q ss_pred EEEEEEEeCcccccEEee-------eEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 002942 221 VKVDIEFKNPLQIPISIS-------NISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 293 (863)
Q Consensus 221 i~V~V~L~NPL~ipL~ls-------~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i 293 (863)
+.+.+++.|+=.-++.|+ |+.|. +.++.. +=+| +++..|+.-..+.
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~----d~~g~~----------------------vwrw-S~~~~FtQal~~~ 54 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVK----DKEGKE----------------------VWRW-SDGKMFTQALQEE 54 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-----TT--E----------------------EEET-TTT-------EEE
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEE----CCCCCE----------------------EEEe-cCCchhhheeeEE
Confidence 678899999999888886 22222 111100 1122 2445677777899
Q ss_pred EECCCceEEEEEEEEeCc--eeEEEEE
Q 002942 294 SLGGAETILVQLMVTPKV--EGILKIV 318 (863)
Q Consensus 294 ~L~p~etk~V~L~v~P~~--~G~L~I~ 318 (863)
+|.|+|+++.+..+-... +|..++.
T Consensus 55 ~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 55 TLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EECCCCEEEEEEEECCCCCCCceEEEe
Confidence 999999999998888777 7887764
No 79
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=57.19 E-value=65 Score=39.78 Aligned_cols=49 Identities=20% Similarity=0.089 Sum_probs=31.8
Q ss_pred HhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHH
Q 002942 74 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDI 128 (863)
Q Consensus 74 VLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~ 128 (863)
.++|.-|.+.|+...|+++|++|+...-+ .-..++.||..+..+|++++
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~------~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARGLD------GAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCchh
Confidence 34556666777778888888887765321 12355667777777777765
No 80
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=56.99 E-value=21 Score=38.35 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=46.8
Q ss_pred CCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 84 DQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 84 gqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..-++.+.++..|+.-|+..+-.....+|.+.||+-++.+|+++.|++.|..
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~ 203 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEP 203 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3445569999999999999999999999999999999999999999988854
No 81
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=56.86 E-value=19 Score=25.48 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 111 HVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 111 HI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
++++.+|+.+..+|+++.|+++|.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~ 26 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEK 26 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4679999999999999999988754
No 82
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=56.75 E-value=31 Score=31.11 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=46.4
Q ss_pred hhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 75 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 75 LAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..|.-|.+.|+..-|+..|.++.+.+.+.. . ....++.+|+.+...|+++.|+..|..
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 64 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKST--Y-APNAHYWLGEAYYAQGKYADAAKAFLA 64 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcc--c-cHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 345666778999999999999998765432 2 246789999999999999999988765
No 83
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=56.08 E-value=52 Score=42.65 Aligned_cols=107 Identities=10% Similarity=-0.128 Sum_probs=69.0
Q ss_pred HHHHHhccchHHHHHHHHhHhCcch---hhH--HHHH------HHHHhhhhcc--CCCcchhhHhHHHhhccchhcCCCc
Q 002942 20 VEMLKARHQYKDAATVYFRICGEEP---LHS--AVML------EQASYCYLLS--KPPMLHKYGFHLVLSGDRYKKCDQI 86 (863)
Q Consensus 20 ~E~lk~~~~~~eAa~~Lir~tsed~---L~S--ALLL------EQAA~c~L~~--~ppm~RKyAfhmVLAGhRyskagqr 86 (863)
++.+...|.|.+|...|-++-.-++ .+. |.++ ++|--+|-++ ..|- .+..+..-|..+...|+.
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd---~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPN---NSNYQAALGYALWDSGDI 659 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCH
Confidence 3344455999999998887764332 111 1111 1122222111 1121 223444556778889999
Q ss_pred HHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 87 NHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 87 ~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.-|+.+|.+|+...-+. -.+++.+|..+..+|++++|+++|.+
T Consensus 660 eeAi~~l~~AL~l~P~~------~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 660 AQSREMLERAHKGLPDD------PALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999864322 25789999999999999999998866
No 84
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=55.61 E-value=27 Score=41.70 Aligned_cols=66 Identities=26% Similarity=0.311 Sum_probs=54.0
Q ss_pred CcchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 64 PMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 64 pm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+..++..=-.+.=||-|.|++...-|+-||++|+.. ..+.| -+|-++|-.+..+|.++.|+.||=.
T Consensus 449 ~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~-----~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 449 NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDA-----STHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCch-----hHHHHHHHHHHHhcChHHHHHHHHH
Confidence 444545555788899999999999999999999965 34444 4678999999999999999998844
No 85
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=54.89 E-value=24 Score=33.21 Aligned_cols=60 Identities=5% Similarity=-0.026 Sum_probs=49.4
Q ss_pred HhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 70 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 70 AfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+..++.-|.-|.+.|+.+.|+++|..+.+..-. .....+.+|..+..+|+++.|+..+..
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~ 76 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY------NSRYWLGLAACCQMLKEYEEAIDAYAL 76 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777888888999999999999999986432 235778999999999999999987755
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=53.98 E-value=1.1e+02 Score=33.71 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=45.6
Q ss_pred hhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 75 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 75 LAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+-|.-|...|+...|.+.|++++..-... -+.+..+|..++..|++++|+.++.+
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~------~~~~~~la~i~~~~g~~~eA~~~l~~ 173 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDD------AWAVHAVAHVLEMQGRFKEGIAFMES 173 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 45567788999999999999999874433 46788999999999999999988755
No 87
>KOG4386 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.56 E-value=45 Score=39.47 Aligned_cols=117 Identities=19% Similarity=0.242 Sum_probs=80.9
Q ss_pred ccEEEEeccccc-CCCCCCCCCccccceeeecccccCCCcEEEEEecCceeeccCCCCceeEeEEEEEEeCCCccEEEEE
Q 002942 648 VDFIFISQPSKS-DSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRV 726 (863)
Q Consensus 648 ~~ii~~w~a~~~-~~~~~~~~~~~~g~~h~~~~~~~~~~~i~~~l~~p~~i~h~F~~~~c~vpv~l~l~N~s~~~v~v~i 726 (863)
=..|+-||-... |+-. ..+ .. --++|. .+..+||..+-+-|. |..--=.+||+..|+|.++...||.|
T Consensus 660 GhyiisWkRtsameNip-iit-tV---itLphv-iVe~iPlhvnadlps-----fgrVReslpvkyhLqnktdlvqdvei 728 (809)
T KOG4386|consen 660 GHYIISWKRTSAMENIP-IIT-TV---ITLPHV-IVEAIPLHVNADLPS-----FGRVRESLPVKYHLQNKTDLVQDVEI 728 (809)
T ss_pred ceEEEEEeecccccCCC-cee-ee---cccccc-eeeeccceeecCCCC-----cceecccccEEEEeccccceeeeEEe
Confidence 346788887544 4332 111 01 112332 345568888776665 44422347999999999999988888
Q ss_pred EecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCccccccCCccCccCceEEeccccceEEeCCCcee
Q 002942 727 NTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTT 806 (863)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~f~W~g~~~~~~~l~p~~~~ 806 (863)
+.-. +-.||++|.-+.++.+-||.+.
T Consensus 729 svep------------------------------------------------------sDaFMFSGlkqirlriLPGteq 754 (809)
T KOG4386|consen 729 SVEP------------------------------------------------------SDAFMFSGLKQIRLRILPGTEQ 754 (809)
T ss_pred eccc------------------------------------------------------chhheecccceEEEEEcCCCce
Confidence 7532 2239999999999999999999
Q ss_pred EEEeEEEEecceeeecCCcEEEEEE
Q 002942 807 DIAMKVCLFSPGTYDLSNYALNWKL 831 (863)
Q Consensus 807 ~~~L~~~~~~~GvYdl~~~~l~~~~ 831 (863)
++....--+.+|--+| +.||+++
T Consensus 755 emlynfypLmAGyqql--Pslninl 777 (809)
T KOG4386|consen 755 EMLYNFYPLMAGYQQL--PSLNINL 777 (809)
T ss_pred EEEEEEehhhchhhhC--CcccccC
Confidence 9999988899998777 4555555
No 88
>PF12735 Trs65: TRAPP trafficking subunit Trs65; InterPro: IPR024662 This family is one of the subunits of the TRAPP Golgi trafficking complex []. TRAPP subunits are found in two different sized complexes, TRAPP I and TRAPP II. While both complexes contain the same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p and Trs85p, with TRAPPC human equivalents, TRAPP II has the additional three subunits ,Trs65p, Trs120p and Trs130p []. While it has been implicated in cell wall biogenesis and stress response, the role of Trs65 in TRAPP II is supported by the findings that the protein co-localises with Trs130p, and deletion of TRS65 in yeast leads to a conditional lethal phenotype if either one of the other TRAPP II-specific subunits is modified []. Furthermore, the trs65 mutant has reduced Ypt31/32p guanine nucleotide exchange, GEF, activity []. Trs65 is also known as killer toxin-resistance protein 11.
Probab=52.95 E-value=1.9e+02 Score=32.38 Aligned_cols=127 Identities=16% Similarity=0.171 Sum_probs=69.3
Q ss_pred cEEEEEecCceeeccCCCCceeEeEEEEEEeCCCccEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCC-cc--ccccc
Q 002942 686 PITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAG-WH--DVPVL 762 (863)
Q Consensus 686 ~i~~~l~~p~~i~h~F~~~~c~vpv~l~l~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~--~~~~~ 762 (863)
-|+.+..+|..|. -....-.++.+.|.|+.+.++.+-...+......-+ ....+.....++.++ +. ++..+
T Consensus 157 gv~~sF~gp~~V~-----~Ge~F~w~v~ivN~S~~~r~L~l~~~~~r~~~~~~~-~~~~~~~~~s~~~~~~~~~~~v~~e 230 (306)
T PF12735_consen 157 GVTFSFSGPSSVK-----VGEPFSWKVFIVNRSSSPRKLALYVPPRRRRNDERS-NSPPPNPSSSSNLNNKQIADAVTDE 230 (306)
T ss_pred CeEEEEeCCceEe-----cCCeEEEEEEEEECCCCCeeEEEEecCccccccccc-cCCCCCcccccccccccccccceeh
Confidence 5666666664443 335667899999999988888877766332211110 000111111111100 11 11111
Q ss_pred ccceecccCCccccccCCccCc-cCceEEeccccceE-EeCCCceeEEEeEEEEecceeeecCCcEEE
Q 002942 763 TDIKVTSQLPLNQVKRSSLLES-VSPFIWSGSSASSV-RLQPMSTTDIAMKVCLFSPGTYDLSNYALN 828 (863)
Q Consensus 763 ~~~~~~~~~~~~~~~~p~~~~~-~~~f~W~g~~~~~~-~l~p~~~~~~~L~~~~~~~GvYdl~~~~l~ 828 (863)
| ..|...-.+.-. ..--++.. ...++ -|.|+++.++.|+-.-+++|+|+|.+.||.
T Consensus 231 n---------~~~~~~~~~~~~~~~gli~Ls-nDiriGpL~P~~c~~~eL~fi~l~~G~~~L~~lkvv 288 (306)
T PF12735_consen 231 N---------IVQAMQKYSSVEESTGLICLS-NDIRIGPLAPGACYSVELRFIALSPGVHNLEGLKVV 288 (306)
T ss_pred h---------HHHHhhhhcccccCCceEEec-ccccccccCCCceEEEEEEEEEeccceEeecceEEE
Confidence 1 112221110000 22355553 45666 499999999999999999999999987663
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=52.76 E-value=52 Score=34.23 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=53.4
Q ss_pred cchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 65 MLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 65 m~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.-..-+--+...|..|-+.|+...|+..|..++..+....| ....++.+|..++.+|+++.|+..+-.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~a~~~la~~~~~~~~~~~A~~~~~~ 95 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY---AEQAQLDLAYAYYKSGDYAEAIAAADR 95 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh---HHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 44444555566667788899999999999999998876554 345678999999999999999977654
No 90
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=52.54 E-value=56 Score=39.14 Aligned_cols=104 Identities=14% Similarity=0.061 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHH
Q 002942 13 TRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRT 92 (863)
Q Consensus 13 ~R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRC 92 (863)
.|+-...++++-.+|+|..|-...-++-.. +.--+- .+.|- .|-++=-.|.-|..-+...+|..-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~-----------l~k~~G-~~hl~---va~~l~~~a~~y~~~~k~~eAv~l 263 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRI-----------LEKTSG-LKHLV---VASMLNILALVYRSLGKYDEAVNL 263 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----------HHHccC-ccCHH---HHHHHHHHHHHHHHhccHHHHHHH
Confidence 444555899999999999875533222111 000000 01111 111111345567788899999999
Q ss_pred HHHHHhhhcC-CCccchhhh-----HHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 93 YRSAVSVYKG-STWSHIKDH-----VHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 93 Y~~A~~vY~~-~~W~~~edH-----I~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|..|+++++. .| ++| ++..|+..|+..|++++|-.|+-+
T Consensus 264 y~~AL~i~e~~~G----~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~ 308 (508)
T KOG1840|consen 264 YEEALTIREEVFG----EDHPAVAATLNNLAVLYYKQGKFAEAEEYCER 308 (508)
T ss_pred HHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 9999999985 33 455 455678889999999999766544
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=52.38 E-value=26 Score=37.62 Aligned_cols=60 Identities=25% Similarity=0.320 Sum_probs=47.5
Q ss_pred hHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 69 YGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 69 yAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|--|.++| |-|.+-|+..+|-+-|++|+++=.+.| -|+-.-|-..+..|.+++|...|.+
T Consensus 69 ~~a~~~~A-~~Yq~~Ge~~~A~e~YrkAlsl~p~~G------dVLNNYG~FLC~qg~~~eA~q~F~~ 128 (250)
T COG3063 69 YLAHLVRA-HYYQKLGENDLADESYRKALSLAPNNG------DVLNNYGAFLCAQGRPEEAMQQFER 128 (250)
T ss_pred HHHHHHHH-HHHHHcCChhhHHHHHHHHHhcCCCcc------chhhhhhHHHHhCCChHHHHHHHHH
Confidence 34566665 889999999999999999998755544 2445557788888999999988876
No 92
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=52.09 E-value=15 Score=25.83 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=23.3
Q ss_pred HhhccchhcCCCcHHHHHHHHHHHhhhcC
Q 002942 74 VLSGDRYKKCDQINHAIRTYRSAVSVYKG 102 (863)
Q Consensus 74 VLAGhRyskagqr~hAlRCY~~A~~vY~~ 102 (863)
..-|.-|.+.|+.+.|++||++|+.++.+
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34577788999999999999999988653
No 93
>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region
Probab=51.27 E-value=44 Score=29.58 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=23.0
Q ss_pred cEEEEEEEEEecCccccccEEEEec
Q 002942 384 DLRHLVLELKNQSDFSVKNLKMKVS 408 (863)
Q Consensus 384 Ei~~~~l~L~N~g~~pl~~l~v~~s 408 (863)
...+..+.|+|.|..|++++.+.++
T Consensus 17 ~y~qy~v~I~N~~~~~I~~~~i~~~ 41 (80)
T PF09478_consen 17 TYTQYDVTITNNGSKPIKSLKISID 41 (80)
T ss_pred EEEEEEEEEEECCCCeEEEEEEEEC
Confidence 4678999999999999999999988
No 94
>PRK13202 ureB urease subunit beta; Reviewed
Probab=50.72 E-value=40 Score=31.61 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=43.4
Q ss_pred cCCccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeec
Q 002942 375 PLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSF 454 (863)
Q Consensus 375 ~~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~ 454 (863)
.-+..+..|....++|+++|.|..|+. +-||-.|+-... .+.|-...++. .=+++
T Consensus 10 ~~~I~ln~grr~~~~l~V~NtGDRPIQ----VGSHyHF~E~N~----aL~FDR~~A~G-----------------~RLdI 64 (104)
T PRK13202 10 SGDIEMNAAALSRLQMRIINAGDRPVQ----VGSHVHLPQANR----ALSFDRATAHG-----------------YRLDI 64 (104)
T ss_pred CCCEEeCCCCCceEEEEEEeCCCCceE----EccccchhhcCc----ceeecHhHhcC-----------------ccccc
Confidence 345567778667899999999998874 346666652211 12221111111 11234
Q ss_pred CC--CcccCCCCeEEEEEEE
Q 002942 455 PE--GISIQGETPLLWPLWY 472 (863)
Q Consensus 455 P~--~~~L~pGes~~lPlwl 472 (863)
|. ....+||+++++.|-=
T Consensus 65 paGTavRFEPG~~k~V~LV~ 84 (104)
T PRK13202 65 PAATAVRFEPGIPQIVGLVP 84 (104)
T ss_pred CCCCeEEECCCCeEEEEEEE
Confidence 42 3578999999999864
No 95
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.64 E-value=31 Score=39.03 Aligned_cols=79 Identities=20% Similarity=0.362 Sum_probs=50.9
Q ss_pred HHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHh----hccchhcCCCcHHHHHHHH
Q 002942 19 WVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVL----SGDRYKKCDQINHAIRTYR 94 (863)
Q Consensus 19 ~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVL----AGhRyskagqr~hAlRCY~ 94 (863)
+|-..-+.|.|.||-.+|||++++|-=---+-.-.-|.||++.+.|. .|..|.| .|.||+-. .-.|-.||+
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~---lAW~~~lk~~t~~e~fsLL--qlIAn~CYk 473 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQ---LAWDMMLKTNTPSERFSLL--QLIANDCYK 473 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCch---HHHHHHHhcCCchhHHHHH--HHHHHHHHH
Confidence 44555667999999999999999872011233445699999998884 3555555 34555543 334556776
Q ss_pred HHHhhhcC
Q 002942 95 SAVSVYKG 102 (863)
Q Consensus 95 ~A~~vY~~ 102 (863)
-+---|..
T Consensus 474 ~~eFyyaa 481 (557)
T KOG3785|consen 474 ANEFYYAA 481 (557)
T ss_pred HHHHHHHH
Confidence 55544443
No 96
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=50.45 E-value=46 Score=32.07 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=47.5
Q ss_pred eEeEEEEEEeCCCccEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCccccccCCccCccC
Q 002942 707 EVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVS 786 (863)
Q Consensus 707 ~vpv~l~l~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 786 (863)
...+++.|.|.++..+.|.+......++. .|=.|-+..+. +. -.++. .+
T Consensus 28 ~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~------------------nG~I~Y~~~~~-~~-----------d~sl~-~~ 76 (121)
T PF06030_consen 28 KQTLEVRITNNSDKEITVKVSANTATTND------------------NGVIDYSQNNP-KK-----------DKSLK-YP 76 (121)
T ss_pred EEEEEEEEEeCCCCCEEEEEEEeeeEecC------------------CEEEEECCCCc-cc-----------CcccC-cc
Confidence 56789999999999988888877754431 12221111110 00 00000 11
Q ss_pred ceEEeccccceEEeCCCceeEEEeEEEEec
Q 002942 787 PFIWSGSSASSVRLQPMSTTDIAMKVCLFS 816 (863)
Q Consensus 787 ~f~W~g~~~~~~~l~p~~~~~~~L~~~~~~ 816 (863)
-=-|...... ++|+|+++..|++++-...
T Consensus 77 ~~~~v~~~~~-Vtl~~~~sk~V~~~i~~P~ 105 (121)
T PF06030_consen 77 FSDLVKIPKE-VTLPPNESKTVTFTIKMPK 105 (121)
T ss_pred hHHhccCCcE-EEECCCCEEEEEEEEEcCC
Confidence 1235655555 9999999999999987765
No 97
>PRK11189 lipoprotein NlpI; Provisional
Probab=50.27 E-value=33 Score=37.74 Aligned_cols=62 Identities=13% Similarity=0.052 Sum_probs=50.5
Q ss_pred hhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 68 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 68 KyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..|-....-|.-|.+.|+...|+.+|.+|+...-.. -..++.+|..+..+|+++.|+..|-+
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~ 123 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM------ADAYNYLGIYLTQAGNFDAAYEAFDS 123 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334455566888999999999999999999975432 25778999999999999999987755
No 98
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=50.27 E-value=23 Score=41.43 Aligned_cols=55 Identities=9% Similarity=0.044 Sum_probs=46.4
Q ss_pred ccchhcCCCcHHHHHHHHHHHhhhcCCCccchhh-hHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 77 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKD-HVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 77 GhRyskagqr~hAlRCY~~A~~vY~~~~W~~~ed-HI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.-|.+.|...-|+.||++|+.+--+. .+- +.+|.+|-.+..+|++++|+.+|.+
T Consensus 82 G~AL~~lGryeEAIa~f~rALeL~Pd~----aeA~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 82 GLSLFSKGRVKDALAQFETALELNPNP----DEAQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCc----hHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 778889999999999999999985432 222 4589999999999999999999876
No 99
>PRK12370 invasion protein regulator; Provisional
Probab=48.86 E-value=71 Score=38.50 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=33.3
Q ss_pred ccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 77 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 77 GhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|+-|...|+...|+.+|.+|+...-+. + -.++.+|..+..+|++++|+.++.+
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l~P~~----~--~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLLSPIS----A--DIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCC----H--HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455556677777777777777653221 1 1346667777777777777766655
No 100
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.74 E-value=98 Score=33.73 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCH
Q 002942 47 SAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMH 126 (863)
Q Consensus 47 SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~ 126 (863)
.+.|.|-|..-|+....|. -+|.-+==|| |--+.-....|+-.|.+|+.|++..+-..-.--+.-.+||.+..+..+
T Consensus 90 vvdl~eKAs~lY~E~Gspd--tAAmaleKAa-k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 90 VVDLYEKASELYVECGSPD--TAAMALEKAA-KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HHHHHHHHHHHHHHhCCcc--hHHHHHHHHH-HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 3445555655555443332 1222222222 223455688999999999999998774333333444557778888889
Q ss_pred HHHHHHHHH
Q 002942 127 DIAVAHMLE 135 (863)
Q Consensus 127 ~~Av~h~l~ 135 (863)
++|-..|++
T Consensus 167 ~Eaa~a~lK 175 (308)
T KOG1585|consen 167 TEAATAFLK 175 (308)
T ss_pred hHHHHHHHH
Confidence 998777666
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=46.79 E-value=21 Score=42.66 Aligned_cols=71 Identities=24% Similarity=0.410 Sum_probs=46.1
Q ss_pred CcchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcC--CCccch----------hhh----------------HHHH
Q 002942 64 PMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG--STWSHI----------KDH----------------VHFH 115 (863)
Q Consensus 64 pm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~--~~W~~~----------edH----------------I~~t 115 (863)
|-.+-+=.|.+| |--|.-.|-..-|+.||+.|++|==. .-|+.+ +|= .-|.
T Consensus 425 ~~~~DpdvQ~~L-GVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN 503 (579)
T KOG1125|consen 425 PTKIDPDVQSGL-GVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN 503 (579)
T ss_pred CCCCChhHHhhh-HHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh
Confidence 334555555555 66677777777777777777776221 234432 111 2356
Q ss_pred HHHHHHHhCCHHHHHHHHHH
Q 002942 116 IGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 116 LGrq~~~Lg~~~~Av~h~l~ 135 (863)
||=-|.++|.+++|++|||+
T Consensus 504 lgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred hhhhhhhhhhHHHHHHHHHH
Confidence 67778999999999999988
No 102
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=46.15 E-value=18 Score=30.78 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=28.8
Q ss_pred hHhHHHhhccchhcCCCcHHHHHHHHHHHhhhc
Q 002942 69 YGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYK 101 (863)
Q Consensus 69 yAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~ 101 (863)
-|+-++--|-.+.+.|....|+.||+.|...+.
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 477788888999999999999999999997653
No 103
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=46.07 E-value=14 Score=27.26 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=21.0
Q ss_pred hccchhcCCCcHHHHHHHHHHHhhhc
Q 002942 76 SGDRYKKCDQINHAIRTYRSAVSVYK 101 (863)
Q Consensus 76 AGhRyskagqr~hAlRCY~~A~~vY~ 101 (863)
=|+-|.+.|...-|+.||.+|+.+-+
T Consensus 5 Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 5 LGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 37788999999999999999886643
No 104
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=45.68 E-value=1.9e+02 Score=31.65 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=44.7
Q ss_pred ccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 77 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 77 GhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|--|.+.|....|-+-|.||++++-+. .-+.-.||-.+.--|+++.|.+.|+.
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~------p~~~nNlgms~~L~gd~~~A~~lll~ 193 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNE------PSIANNLGMSLLLRGDLEDAETLLLP 193 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCC------chhhhhHHHHHHHcCCHHHHHHHHHH
Confidence 345678899999999999999997654 45667788899999999999999888
No 105
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=45.22 E-value=18 Score=32.06 Aligned_cols=32 Identities=6% Similarity=0.172 Sum_probs=27.3
Q ss_pred HhHHHhhccchhcCCCcHHHHHHHHHHHhhhc
Q 002942 70 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYK 101 (863)
Q Consensus 70 AfhmVLAGhRyskagqr~hAlRCY~~A~~vY~ 101 (863)
|.-+|-.|-...++|...-|++||.+|++.|.
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~ 37 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLM 37 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 45567777888999999999999999998764
No 106
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=44.93 E-value=5.1e+02 Score=34.60 Aligned_cols=33 Identities=21% Similarity=0.482 Sum_probs=29.7
Q ss_pred cCccCceEEeccccceEE-eCCCceeEEEeEEEE
Q 002942 782 LESVSPFIWSGSSASSVR-LQPMSTTDIAMKVCL 814 (863)
Q Consensus 782 ~~~~~~f~W~g~~~~~~~-l~p~~~~~~~L~~~~ 814 (863)
+.....+.|.|..+..+. |+|++++++.+.++|
T Consensus 1152 ~~~~~ril~~G~Lq~~l~~l~p~~~~~~~~~lif 1185 (1185)
T PF08626_consen 1152 LDLDRRILWNGSLQQPLPELEPGESTEHELSLIF 1185 (1185)
T ss_pred cCcCCeEEEEccCcccccccCCCceEEEEEEEEC
Confidence 456889999999999977 999999999999987
No 107
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=44.52 E-value=2.9e+02 Score=26.46 Aligned_cols=96 Identities=11% Similarity=0.101 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHhHhCcc--h-hhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHH
Q 002942 14 RCGLWWVEMLKARHQYKDAATVYFRICGEE--P-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAI 90 (863)
Q Consensus 14 R~all~~E~lk~~~~~~eAa~~Lir~tsed--~-L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAl 90 (863)
|+.+-.+.++.+.|...+|...+-+.-... . .+.-.++ --|.-|..-|+..-|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i-----------------------~lastlr~LG~~deA~ 58 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALI-----------------------QLASTLRNLGRYDEAL 58 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHH-----------------------HHHHHHHHcCCHHHHH
Confidence 456677888999999998888776654321 1 1111111 2334455889999999
Q ss_pred HHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 91 RTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 91 RCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+.++.+..-|-+..|. +-+...++--..++|+.++|+..++.
T Consensus 59 ~~L~~~~~~~p~~~~~---~~l~~f~Al~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 59 ALLEEALEEFPDDELN---AALRVFLALALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHHHHHCCCcccc---HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999988887773 33445556677889999999988876
No 108
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=44.31 E-value=74 Score=29.12 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=23.8
Q ss_pred CceEEEEEEEeCcccccEEeeeEEEEEEE
Q 002942 218 GEPVKVDIEFKNPLQIPISISNISLICEL 246 (863)
Q Consensus 218 gEpi~V~V~L~NPL~ipL~ls~I~L~~~~ 246 (863)
+-.+.+.+.+.||-.+|+.+.++.-...+
T Consensus 14 ~~~~~l~l~v~NPN~~~l~~~~~~y~l~~ 42 (100)
T smart00769 14 EIEIVLKVKVQNPNPFPIPVNGLSYDLYL 42 (100)
T ss_pred EEEEEEEEEEECCCCCccccccEEEEEEE
Confidence 34678899999999999999999855443
No 109
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=44.28 E-value=16 Score=26.07 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=20.5
Q ss_pred hccchhcCCCcHHHHHHHHHHHhhh
Q 002942 76 SGDRYKKCDQINHAIRTYRSAVSVY 100 (863)
Q Consensus 76 AGhRyskagqr~hAlRCY~~A~~vY 100 (863)
=|+-|.+.|+...|+.||++|+++.
T Consensus 7 ~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 7 LGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHC
Confidence 4677888899999999999999874
No 110
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=44.27 E-value=1.8e+02 Score=29.49 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=54.7
Q ss_pred HHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhh
Q 002942 20 VEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSV 99 (863)
Q Consensus 20 ~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~v 99 (863)
+--+...|.|++|.+.+--++--| |..-.|-+.+ |--+..-|....|+.||.+|..+
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~D--------------------p~~~~y~~gL---G~~~Q~~g~~~~AI~aY~~A~~L 98 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYD--------------------AWSFDYWFRL---GECCQAQKHWGEAIYAYGRAAQI 98 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--------------------cccHHHHHHH---HHHHHHHhhHHHHHHHHHHHHhc
Confidence 334566777777776544333333 2222333332 12244567788899999999876
Q ss_pred hcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 100 YKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 100 Y~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
=.+-. ..+|.+|..+..+|+.+.|.+.|..
T Consensus 99 ~~ddp------~~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 99 KIDAP------QAPWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred CCCCc------hHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 32221 4778899999999999998877754
No 111
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=44.14 E-value=78 Score=37.87 Aligned_cols=70 Identities=21% Similarity=0.207 Sum_probs=48.8
Q ss_pred eeecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeee-ee
Q 002942 214 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSE-VD 292 (863)
Q Consensus 214 ~~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~-~~ 292 (863)
...+|+++++.++++||=.-.++++ +.. .++++++.+ -.+ ..
T Consensus 480 ~~~~~~~~~l~~~I~N~T~~~~~~~---~~m--e~s~~F~fs--------------------------------G~k~~~ 522 (554)
T PF07919_consen 480 SAIVGEPFTLSYTIENPTNHFQTFE---LSM--EPSDDFMFS--------------------------------GPKQTT 522 (554)
T ss_pred ccccCcEEEEEEEEECCCCccEEEE---EEE--ccCCCEEEE--------------------------------CCCcCc
Confidence 4557999999999999877666553 222 222222221 111 37
Q ss_pred EEECCCceEEEEEEEEeCceeEEEEEEE
Q 002942 293 ISLGGAETILVQLMVTPKVEGILKIVGV 320 (863)
Q Consensus 293 i~L~p~etk~V~L~v~P~~~G~L~I~Gv 320 (863)
+.|.|.++++++..+.|...|.++.-.+
T Consensus 523 ~~llP~s~~~~~y~l~pl~~G~~~lP~l 550 (554)
T PF07919_consen 523 FSLLPFSRHTVRYNLLPLVAGWWILPRL 550 (554)
T ss_pred eEECCCCcEEEEEEEEEccCCcEECCcE
Confidence 9999999999999999999998765433
No 112
>COG1470 Predicted membrane protein [Function unknown]
Probab=43.84 E-value=6.3e+02 Score=30.08 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=36.9
Q ss_pred eeEEECCCceEEEEEEEEeCceeE----EEEEEEEEEeccceeeEEEeecchh
Q 002942 291 VDISLGGAETILVQLMVTPKVEGI----LKIVGVRWRLSGSLVGVYNFESNLV 339 (863)
Q Consensus 291 ~~i~L~p~etk~V~L~v~P~~~G~----L~I~Gv~~~L~g~v~g~~~F~i~g~ 339 (863)
..+.|.|.|.-.+.|++.|.++|. +.|.|+.| +.-.|.+.+.+.|-.|
T Consensus 37 ~~~~lr~~e~~~l~~~v~~~~~g~~~v~f~i~~~~~-~~v~v~~~~~l~it~p 88 (513)
T COG1470 37 KGLKLRPKESVELQFKVLPGKAGSYSVKFSIEGVPY-WTVNVYTSEPLQITLP 88 (513)
T ss_pred eeeEcCCCcceEEEEEEecCCCCcEEEEEEECCcee-EEEEEEecccEEEecc
Confidence 479999999999999999999984 77888888 4433555666665544
No 113
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.69 E-value=1.3e+02 Score=36.86 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=12.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHH
Q 002942 114 FHIGQWYAVLGMHDIAVAHML 134 (863)
Q Consensus 114 ~tLGrq~~~Lg~~~~Av~h~l 134 (863)
..||-.+.+.|.++.|++-++
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~ 378 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYL 378 (966)
T ss_pred HHHHHHHHHhccchHHHHHHH
Confidence 445666666677777765443
No 114
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=43.56 E-value=39 Score=23.98 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 112 VHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 112 I~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+.+.+|..+..+|+++.|+.+|-+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~ 26 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQR 26 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHH
Confidence 468899999999999999988754
No 115
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=43.43 E-value=1.4e+02 Score=37.71 Aligned_cols=110 Identities=13% Similarity=0.054 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcch----hhHHHHHHH-------HHhhhhc---cCCCcchhhHhHHHhhccch
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEP----LHSAVMLEQ-------ASYCYLL---SKPPMLHKYGFHLVLSGDRY 80 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~----L~SALLLEQ-------AA~c~L~---~~ppm~RKyAfhmVLAGhRy 80 (863)
+-...+.++...|.+.+|...|-++-..++ ...++.+-. .|.-.+. ...|.. +.++ .-|.-|
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~---~~~~-~la~~l 126 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDK---ANLL-ALAYVY 126 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHH-HHHHHH
Confidence 345567788888999998888877543321 222211100 0110111 011211 2233 347888
Q ss_pred hcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHH
Q 002942 81 KKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHML 134 (863)
Q Consensus 81 skagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l 134 (863)
...|+...|+.+|.+|+..+-+. ..+++.+|..+...|+.+.|++.+-
T Consensus 127 ~~~g~~~~Al~~l~~al~~~P~~------~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 127 KRAGRHWDELRAMTQALPRAPQT------QQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHH
Confidence 89999999999999999875542 2344567887778888888887664
No 116
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=42.99 E-value=24 Score=30.65 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=30.6
Q ss_pred hhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcC
Q 002942 67 HKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG 102 (863)
Q Consensus 67 RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~ 102 (863)
-.-|+-+|--|-.+.++|..+.|+.||.+|.+.|..
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 355677888888999999999999999999987754
No 117
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=42.59 E-value=1.6e+02 Score=38.47 Aligned_cols=47 Identities=11% Similarity=0.015 Sum_probs=27.4
Q ss_pred cCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 82 KCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 82 kagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..|+..-|+++|++|++..-+ . -.++.+|..+..+|+.++|++.|.+
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~P~-----~--~a~~~LA~~l~~lG~~deA~~~l~~ 634 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAPS-----A--NAYVARATIYRQRHNVPAAVSDLRA 634 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-----H--HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 447777777777777765421 1 2345556666666666666554433
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=42.25 E-value=65 Score=32.57 Aligned_cols=65 Identities=22% Similarity=0.300 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHH
Q 002942 14 RCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTY 93 (863)
Q Consensus 14 R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY 93 (863)
|.-+-.+.|++.+|.|.+|...+-++..-+. -.+-..=.||.|+| +.|++.-|..||
T Consensus 70 ~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L----------------------~lG~~~~A~~aF 126 (157)
T PRK15363 70 DYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL----------------------ACDNVCYAIKAL 126 (157)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH----------------------HcCCHHHHHHHH
Confidence 4566678899999999999998887665332 11222234555555 788999999999
Q ss_pred HHHHhhhc
Q 002942 94 RSAVSVYK 101 (863)
Q Consensus 94 ~~A~~vY~ 101 (863)
+.|+..-.
T Consensus 127 ~~Ai~~~~ 134 (157)
T PRK15363 127 KAVVRICG 134 (157)
T ss_pred HHHHHHhc
Confidence 99997653
No 119
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=41.72 E-value=41 Score=23.04 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHH
Q 002942 112 VHFHIGQWYAVLGMHDIAVAHML 134 (863)
Q Consensus 112 I~~tLGrq~~~Lg~~~~Av~h~l 134 (863)
.++.||+.+..+|++++|.+++.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 56889999999999999998874
No 120
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=41.06 E-value=1.2e+02 Score=27.42 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=47.5
Q ss_pred CCceeecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeee
Q 002942 211 ESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSE 290 (863)
Q Consensus 211 ~~~~~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 290 (863)
+...+.+|+.....|+|+|--.+|..+. ++ .... ....|.++.
T Consensus 12 dFG~v~~g~~~~~~v~l~N~s~~p~~f~-v~----~~~~--------------------------------~~~~~~v~~ 54 (102)
T PF14874_consen 12 DFGNVFVGQTYSRTVTLTNTSSIPARFR-VR----QPES--------------------------------LSSFFSVEP 54 (102)
T ss_pred EeeEEccCCEEEEEEEEEECCCCCEEEE-EE----eCCc--------------------------------CCCCEEEEC
Confidence 4556779999999999999999987554 21 1100 001244444
Q ss_pred eeEEECCCceEEEEEEEEe-CceeEEE
Q 002942 291 VDISLGGAETILVQLMVTP-KVEGILK 316 (863)
Q Consensus 291 ~~i~L~p~etk~V~L~v~P-~~~G~L~ 316 (863)
..-.|.|+++..+.+.+.| ...|.+.
T Consensus 55 ~~g~l~PG~~~~~~V~~~~~~~~g~~~ 81 (102)
T PF14874_consen 55 PSGFLAPGESVELEVTFSPTKPLGDYE 81 (102)
T ss_pred CCCEECCCCEEEEEEEEEeCCCCceEE
Confidence 4667999999999999994 5557543
No 121
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=40.27 E-value=98 Score=27.74 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=17.2
Q ss_pred eEEEEEEeCCCccEEEEEEec
Q 002942 709 NLKMTIYNSSDAAMFVRVNTF 729 (863)
Q Consensus 709 pv~l~l~N~s~~~v~v~i~~~ 729 (863)
.|.|.|.|.....+.|+|.-.
T Consensus 21 ~l~l~l~N~g~~~~~~~v~~~ 41 (89)
T PF05506_consen 21 NLRLTLSNPGSAAVTFTVYDN 41 (89)
T ss_pred EEEEEEEeCCCCcEEEEEEeC
Confidence 688899999888888888753
No 122
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=39.47 E-value=1.6e+02 Score=37.14 Aligned_cols=114 Identities=21% Similarity=0.260 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhc----------------cCCCcchhhHhHHH
Q 002942 11 NATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLL----------------SKPPMLHKYGFHLV 74 (863)
Q Consensus 11 ~A~R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~----------------~~ppm~RKyAfhmV 74 (863)
-++|..|--|-.+-++|.+.+|-..|+-+-..|+ +.+....+-|.||=+ .+|. = +-||-.
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d--~e~W~~ 212 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-D--YELWKR 212 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-C--hHHHHH
Confidence 3466666667777788888887776664433333 111122222222211 0111 1 133333
Q ss_pred hhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 75 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 75 LAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+ +.+..+-|....|.-||.+|++ ++...|.++.+-... +-.+|+...|..-|+.
T Consensus 213 l-adls~~~~~i~qA~~cy~rAI~-~~p~n~~~~~ers~L-----~~~~G~~~~Am~~f~~ 266 (895)
T KOG2076|consen 213 L-ADLSEQLGNINQARYCYSRAIQ-ANPSNWELIYERSSL-----YQKTGDLKRAMETFLQ 266 (895)
T ss_pred H-HHHHHhcccHHHHHHHHHHHHh-cCCcchHHHHHHHHH-----HHHhChHHHHHHHHHH
Confidence 3 3566666777777777777776 466667666554432 5556666666554433
No 123
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=38.92 E-value=39 Score=39.98 Aligned_cols=66 Identities=15% Similarity=0.260 Sum_probs=59.9
Q ss_pred hhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 68 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 68 KyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+-+++++.+|.-+..-|+...|+++|..|.. .+..|..+..=..|.+|-.+..+.++++|..+|.+
T Consensus 265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~--~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 265 NSALFLFFEGRLERLKGNLEEAIESFERAIE--SQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHhcc--chhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 6799999999999999999999999999983 25789999887899999999999999999988766
No 124
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=38.41 E-value=32 Score=30.72 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=30.3
Q ss_pred hhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhc
Q 002942 67 HKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYK 101 (863)
Q Consensus 67 RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~ 101 (863)
-|-||-.|--|-|+...|++..|+-+|++|+....
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~ 39 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELE 39 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999987643
No 125
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=38.37 E-value=97 Score=30.95 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=26.1
Q ss_pred cccCccEEEEEEEEEecCccccccEEEEecC
Q 002942 379 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSH 409 (863)
Q Consensus 379 ~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~ 409 (863)
.++..-.+-+.|.|+|.|..++++|++.-..
T Consensus 80 ~~~s~~mvsIql~ftN~s~~~i~~I~i~~k~ 110 (145)
T PF14796_consen 80 SLYSPSMVSIQLTFTNNSDEPIKNIHIGEKK 110 (145)
T ss_pred cCCCCCcEEEEEEEEecCCCeecceEECCCC
Confidence 3577888889999999999999999887444
No 126
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=37.87 E-value=74 Score=35.92 Aligned_cols=87 Identities=18% Similarity=0.204 Sum_probs=57.9
Q ss_pred HHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhh
Q 002942 20 VEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSV 99 (863)
Q Consensus 20 ~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~v 99 (863)
+.|+.+.+++++|+..+-++..-++ - .==|.-+|-.||=| .|+...|+|.|++.+|.
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~~-------------------~--nvEaiAcia~~yfY--~~~PE~AlryYRRiLqm 353 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLHP-------------------I--NVEAIACIAVGYFY--DNNPEMALRYYRRILQM 353 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCC-------------------c--cceeeeeeeecccc--CCChHHHHHHHHHHHHh
Confidence 3455555666666666655554333 0 00122234444444 58899999999999987
Q ss_pred hcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 100 YKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 100 Y~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
=-..+ .+.-.||-.|+.-+|+|-++-.|.+
T Consensus 354 G~~sp------eLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 354 GAQSP------ELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred cCCCh------HHHhhHHHHHHhhcchhhhHHHHHH
Confidence 43332 4777889899999999999988877
No 127
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=37.74 E-value=31 Score=30.11 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=29.3
Q ss_pred hhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhc
Q 002942 68 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYK 101 (863)
Q Consensus 68 KyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~ 101 (863)
.-|..++--|-...++|..+-|+.||.+|++.|.
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~ 37 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEYFM 37 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4566777778899999999999999999998764
No 128
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=37.68 E-value=66 Score=36.55 Aligned_cols=57 Identities=19% Similarity=0.083 Sum_probs=45.2
Q ss_pred HHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 73 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 73 mVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|..-|...-..|...-|+.+|.+|+...-+. ..+++.+|..+..+|++++|+..+.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~g~~~eAl~~~~~ 61 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN------AELYADRAQANIKLGNFTEAVADANK 61 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444566667888999999999999875442 24778899999999999999987655
No 129
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=37.65 E-value=1.4e+02 Score=28.15 Aligned_cols=55 Identities=11% Similarity=0.176 Sum_probs=35.6
Q ss_pred eEEEEEEeCCCccEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCccccccCCccCccCce
Q 002942 709 NLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPF 788 (863)
Q Consensus 709 pv~l~l~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~f 788 (863)
--+|.|.|.+..+..+.|...... .+
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~------------------------------------------------------~~ 59 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLP------------------------------------------------------GA 59 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-S------------------------------------------------------S-
T ss_pred EEEEEEEECCCCCEEEEEEEecCC------------------------------------------------------Ce
Confidence 468999999998888888765410 14
Q ss_pred EEeccccceEEeCCCceeEEEeEEEEecce
Q 002942 789 IWSGSSASSVRLQPMSTTDIAMKVCLFSPG 818 (863)
Q Consensus 789 ~W~g~~~~~~~l~p~~~~~~~L~~~~~~~G 818 (863)
-|.+ ....++|.|+++.++++.+.+...-
T Consensus 60 ~l~~-~~~~i~v~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 60 ELQG-PENTITVPPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EE-E-S--EEEE-TT-EEEEEEEEEE-GGG
T ss_pred EEEC-CCcceEECCCCEEEEEEEEEECHHH
Confidence 5555 6688999999999999999887654
No 130
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=37.59 E-value=1.2e+02 Score=36.45 Aligned_cols=81 Identities=15% Similarity=0.258 Sum_probs=59.9
Q ss_pred ccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCc
Q 002942 26 RHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTW 105 (863)
Q Consensus 26 ~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W 105 (863)
.|.|+||-..|-+.|..|+ +||=--|-=||-|.--|-...|+-||..|.+.+.|.+=
T Consensus 325 i~k~seARry~SKat~lD~-----------------------~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl 381 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDP-----------------------TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL 381 (611)
T ss_pred hcCcHHHHHHHHHHhhcCc-----------------------cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc
Confidence 3666666666666666555 45555566699999999999999999999999999753
Q ss_pred cchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 106 SHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 106 ~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.. +-||-|+..++.+..|=+.|..
T Consensus 382 P~------LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 382 PS------LYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred hH------HHHHHHHHHhccHHHHHHHHHH
Confidence 32 4578888878888877666644
No 131
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=37.01 E-value=2.6e+02 Score=30.97 Aligned_cols=77 Identities=22% Similarity=0.202 Sum_probs=49.0
Q ss_pred CceeEeEEEEEEeCCCccEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCccccccCCccC
Q 002942 704 SFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLE 783 (863)
Q Consensus 704 ~~c~vpv~l~l~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 783 (863)
.-...-.++++.|..+.+++|+|.=.-..+. ..+|||.-.-... |.--+
T Consensus 240 ~~~~~~~~itv~N~~~~~v~v~v~d~iPvs~---------------------------~~~I~V~~~~~~~----~~~~~ 288 (317)
T PF13598_consen 240 QRRTYEYTITVRNNKDEPVTVTVEDQIPVSE---------------------------DEDIKVELLEPPE----PNEDE 288 (317)
T ss_pred EEEEEEEEEEEECCCCCCEEEEEEeCCCCCC---------------------------CceEEEEEcCCCC----CcccC
Confidence 4556778999999999999988874332111 1355554432110 10012
Q ss_pred ccCceEEeccccceEEeCCCceeEEEeEEEEecc
Q 002942 784 SVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSP 817 (863)
Q Consensus 784 ~~~~f~W~g~~~~~~~l~p~~~~~~~L~~~~~~~ 817 (863)
..+-+.| ++.|+||+..+|.+...+-.|
T Consensus 289 ~~g~~~W------~~~l~~g~~~~l~~~y~v~~P 316 (317)
T PF13598_consen 289 KDGILEW------KVTLPPGESRTLEFSYEVEYP 316 (317)
T ss_pred CCCEEEE------EEEECCCCEEEEEEEEEEEcC
Confidence 3445556 599999999999998877665
No 132
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=36.63 E-value=1.2e+02 Score=24.90 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=42.6
Q ss_pred HHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCC-CcHHHHHHHH
Q 002942 16 GLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCD-QINHAIRTYR 94 (863)
Q Consensus 16 all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskag-qr~hAlRCY~ 94 (863)
-...+.++-..|.|.+|-..|-++..-++ ..+.++-.-|.||. +-| +...|+.+|.
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~----------------------~~~~~~~~A~~~~~ 62 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYM----------------------KLGKDYEEAIEDFE 62 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHH----------------------HTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH----------------------HhCccHHHHHHHHH
Confidence 34567788889999999998888776665 12334444455554 334 4688999999
Q ss_pred HHHhh
Q 002942 95 SAVSV 99 (863)
Q Consensus 95 ~A~~v 99 (863)
+|+++
T Consensus 63 ~al~l 67 (69)
T PF13414_consen 63 KALKL 67 (69)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 99875
No 133
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.59 E-value=61 Score=39.35 Aligned_cols=113 Identities=25% Similarity=0.365 Sum_probs=65.3
Q ss_pred HHHHHHhccchHHHHHHHHhHhCc-----ch---hhHHHH----HHHHHhhhhcc---CCCcchhhHhHHHhhccchhcC
Q 002942 19 WVEMLKARHQYKDAATVYFRICGE-----EP---LHSAVM----LEQASYCYLLS---KPPMLHKYGFHLVLSGDRYKKC 83 (863)
Q Consensus 19 ~~E~lk~~~~~~eAa~~Lir~tse-----d~---L~SALL----LEQAA~c~L~~---~ppm~RKyAfhmVLAGhRyska 83 (863)
++-++|.+|++.+|-+.+..|-.- |. |-+||. +|+|--||..+ +|- -|++|-- -|+-....
T Consensus 122 ~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~---l~ca~s~-lgnLlka~ 197 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD---LYCARSD-LGNLLKAE 197 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc---hhhhhcc-hhHHHHhh
Confidence 678999999999888777655421 21 444443 56676776543 331 1222211 14445555
Q ss_pred CCcHHHHHHHHHHHhhhcC----------------CCccchh---------hh---HHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 84 DQINHAIRTYRSAVSVYKG----------------STWSHIK---------DH---VHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 84 gqr~hAlRCY~~A~~vY~~----------------~~W~~~e---------dH---I~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|....|.-||..|+..--+ .-|-.|. -| -++.||-.+-.++++|+||..+++
T Consensus 198 Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 6666677777777653221 1122221 11 356778888888889999876655
No 134
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=36.57 E-value=24 Score=25.82 Aligned_cols=29 Identities=10% Similarity=0.181 Sum_probs=21.9
Q ss_pred hhccchhcCCCcHHHHHHHHHHHhhhcCC
Q 002942 75 LSGDRYKKCDQINHAIRTYRSAVSVYKGS 103 (863)
Q Consensus 75 LAGhRyskagqr~hAlRCY~~A~~vY~~~ 103 (863)
--|.-|...|+...|+.+|.+|+.+++.-
T Consensus 7 ~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 7 NLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 34667888999999999999999998764
No 135
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=36.56 E-value=18 Score=28.13 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=15.9
Q ss_pred eEEEEecceeeecCCcEEEEEE
Q 002942 810 MKVCLFSPGTYDLSNYALNWKL 831 (863)
Q Consensus 810 L~~~~~~~GvYdl~~~~l~~~~ 831 (863)
..|.|..||+|.|. ++...+.
T Consensus 5 ~nW~FT~PG~Y~l~-~~a~~~~ 25 (41)
T TIGR03769 5 ANWVFTKPGTYTLT-VQATATL 25 (41)
T ss_pred cceeeCCCeEEEEE-EEEEEEe
Confidence 57899999999876 5555544
No 136
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=36.20 E-value=4e+02 Score=25.62 Aligned_cols=84 Identities=12% Similarity=0.204 Sum_probs=45.4
Q ss_pred eecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEE
Q 002942 215 CVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDIS 294 (863)
Q Consensus 215 ~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i~ 294 (863)
+-.|+..++.|.+.|.-+=++.+. +.+.--.+..+|.+........ .+.... . .+..+ .-....|+
T Consensus 23 ~~P~q~~~l~v~i~N~s~~~~tv~-v~~~~A~Tn~nG~I~Y~~~~~~----~d~sl~-~-~~~~~-------v~~~~~Vt 88 (121)
T PF06030_consen 23 VKPGQKQTLEVRITNNSDKEITVK-VSANTATTNDNGVIDYSQNNPK----KDKSLK-Y-PFSDL-------VKIPKEVT 88 (121)
T ss_pred eCCCCEEEEEEEEEeCCCCCEEEE-EEEeeeEecCCEEEEECCCCcc----cCcccC-c-chHHh-------ccCCcEEE
Confidence 346899999999999877777663 3333233333333322111000 000000 0 01111 11123499
Q ss_pred ECCCceEEEEEEEEeCce
Q 002942 295 LGGAETILVQLMVTPKVE 312 (863)
Q Consensus 295 L~p~etk~V~L~v~P~~~ 312 (863)
|+|+|++.|.+.++--+.
T Consensus 89 l~~~~sk~V~~~i~~P~~ 106 (121)
T PF06030_consen 89 LPPNESKTVTFTIKMPKK 106 (121)
T ss_pred ECCCCEEEEEEEEEcCCC
Confidence 999999999999987665
No 137
>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional
Probab=35.60 E-value=86 Score=33.67 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=28.2
Q ss_pred EecCCCeEEEEEecC--CccccCccEEEEEEEEEecCccccccEE
Q 002942 362 VIKSLPKLEGLIHPL--PERAYAGDLRHLVLELKNQSDFSVKNLK 404 (863)
Q Consensus 362 V~~~~P~L~v~~~~~--P~~ll~GEi~~~~l~L~N~g~~pl~~l~ 404 (863)
|.+.|||- |... ...+.-||...+.-+.+|.+..|+-..-
T Consensus 117 v~~~lpW~---F~P~q~~v~V~pGE~~lv~Y~a~N~sd~~i~G~A 158 (232)
T PTZ00128 117 TGSTMPWE---FEPLQKEVEVLPGETALAFYRAKNRSDKPVIGVA 158 (232)
T ss_pred CCCCCCce---EEeeeeEEEEcCCCeEEEEEEEECCCCCcEEEEE
Confidence 44556653 3322 2367889999999999999998776543
No 138
>COG3175 COX11 Cytochrome oxidase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=35.56 E-value=1.6e+02 Score=30.54 Aligned_cols=65 Identities=20% Similarity=0.317 Sum_probs=40.5
Q ss_pred cccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCc
Q 002942 379 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGI 458 (863)
Q Consensus 379 ~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~~~ 458 (863)
.+.=||+-.+.-+-+|.+..|+..-.+-.=-| +.+. .=+.+. ..|=+. +.
T Consensus 88 ~v~pGet~~~~y~a~N~sd~~itg~A~~nv~P-----~~Ag----------------------~YF~Kv--eCFCFt-eq 137 (195)
T COG3175 88 YVRPGETNLIFYEAENLSDKPITGQATYNVAP-----GQAG----------------------AYFNKV--ECFCFT-EQ 137 (195)
T ss_pred EeccCceEEEEEEEecCCCCCceeEEecccCh-----hHhh----------------------hheeee--eEEEee-ec
Confidence 35679999999999999998876533321111 1110 011111 122232 66
Q ss_pred ccCCCCeEEEEEEEE
Q 002942 459 SIQGETPLLWPLWYR 473 (863)
Q Consensus 459 ~L~pGes~~lPlwlr 473 (863)
.|+|||++++|+.+-
T Consensus 138 ~L~pgE~vemPV~Ff 152 (195)
T COG3175 138 TLKPGETVEMPVVFF 152 (195)
T ss_pred ccCCCCeEeccEEEE
Confidence 899999999999775
No 139
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=35.39 E-value=1e+02 Score=28.90 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=41.1
Q ss_pred CCccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecC
Q 002942 376 LPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFP 455 (863)
Q Consensus 376 ~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P 455 (863)
-+.++..|. ..++|+++|.|..|+. +-||-.|+-... .++|-...++. .=+++|
T Consensus 11 ~~I~ln~gr-~~~~l~V~NtGDRPIQ----VGSHyHF~E~N~----aL~FDR~~A~G-----------------~RLdIp 64 (101)
T TIGR00192 11 GDITINEGR-KTVSVKVKNTGDRPIQ----VGSHFHFFEVNR----ALDFDRELAFG-----------------MRLDIP 64 (101)
T ss_pred CCEEeCCCC-cEEEEEEEeCCCcceE----EccccchhhcCc----ceeecHhhhcC-----------------cccccC
Confidence 344555554 5689999999998874 346666652211 12221111110 112344
Q ss_pred C--CcccCCCCeEEEEEEEE
Q 002942 456 E--GISIQGETPLLWPLWYR 473 (863)
Q Consensus 456 ~--~~~L~pGes~~lPlwlr 473 (863)
. ....+||+++++.|-=-
T Consensus 65 aGTavRFEPG~~k~V~LV~~ 84 (101)
T TIGR00192 65 SGTAVRFEPGEEKSVELVAI 84 (101)
T ss_pred CCCeEeECCCCeEEEEEEEc
Confidence 2 35789999999998643
No 140
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=35.28 E-value=97 Score=29.02 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=40.2
Q ss_pred CccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCC
Q 002942 377 PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPE 456 (863)
Q Consensus 377 P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~ 456 (863)
|..+..| ..+++|+++|.|..|+. +-||-.|+-.. ..+.|-...++ +.=+++|.
T Consensus 12 ~I~lN~g-r~~~~l~V~NtGDRpIQ----VGSH~HF~E~N----~aL~FDR~~A~-----------------G~RLdIpa 65 (101)
T cd00407 12 DIELNAG-REAVTLKVKNTGDRPIQ----VGSHYHFFEVN----PALKFDREKAY-----------------GMRLDIPA 65 (101)
T ss_pred CeEeCCC-CCEEEEEEEeCCCcceE----EccccchhhcC----ccccccHHHcc-----------------cceecccC
Confidence 3444444 45789999999998874 34676665221 11222111111 11123452
Q ss_pred --CcccCCCCeEEEEEEE
Q 002942 457 --GISIQGETPLLWPLWY 472 (863)
Q Consensus 457 --~~~L~pGes~~lPlwl 472 (863)
....+||+++++.|-=
T Consensus 66 GTavRFEPG~~k~V~LV~ 83 (101)
T cd00407 66 GTAVRFEPGEEKEVELVP 83 (101)
T ss_pred CCeEEECCCCeEEEEEEE
Confidence 3578999999999864
No 141
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=35.17 E-value=1.8e+02 Score=36.61 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=34.5
Q ss_pred hhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 75 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 75 LAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+.|.-+...|+...|+.+|..++...-+.. -+.+.+|..+...|+++.|++.+.+
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~~P~n~------~l~~~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYNAPGNQ------GLRIDYASVLQARGWPRAAENELKK 418 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 344455566777777777777766544433 2666777777777777777666544
No 142
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=34.92 E-value=87 Score=29.23 Aligned_cols=70 Identities=19% Similarity=0.166 Sum_probs=35.6
Q ss_pred CccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCC
Q 002942 377 PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPE 456 (863)
Q Consensus 377 P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~ 456 (863)
+..+..|. .+++|+++|.|..|+. +-||-.|+ +.+..++|-...++. .=+++|.
T Consensus 11 ~I~lN~gr-~~~~l~V~N~GDRPIQ----VGSH~HF~----E~N~aL~FDR~~A~G-----------------~RLdIPa 64 (100)
T PF00699_consen 11 DIELNAGR-ERITLEVTNTGDRPIQ----VGSHYHFF----EVNPALEFDREAAYG-----------------MRLDIPA 64 (100)
T ss_dssp EEETTTTS-EEEEEEEEE-SSS-EE----EETTS-GG----GS-TTEES-HHHHTT-----------------EEE-SST
T ss_pred cEEecCCC-cEEEEEEEeCCCcceE----EccccCHH----HHhHHhhhhHHHhCC-----------------cccCcCC
Confidence 34455554 7889999999998864 34676665 112222232222111 1123452
Q ss_pred --CcccCCCCeEEEEEEE
Q 002942 457 --GISIQGETPLLWPLWY 472 (863)
Q Consensus 457 --~~~L~pGes~~lPlwl 472 (863)
....+||+++++.|-=
T Consensus 65 GTavRFEPG~~k~V~LV~ 82 (100)
T PF00699_consen 65 GTAVRFEPGDTKEVELVP 82 (100)
T ss_dssp T-EEEE-TT-EEEEEEEE
T ss_pred CCeEEECCCCcEEEEEEE
Confidence 3578999999998853
No 143
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=34.75 E-value=35 Score=29.58 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=29.5
Q ss_pred hhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcC
Q 002942 68 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG 102 (863)
Q Consensus 68 KyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~ 102 (863)
.-|+-++-.|-.+.+.|...-|+.||.+|...|..
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34666777888899999999999999999987653
No 144
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=34.22 E-value=1.6e+02 Score=32.93 Aligned_cols=116 Identities=19% Similarity=0.198 Sum_probs=63.3
Q ss_pred eEEECCCceEEEEEEEEeCceeEEEEEEEEEEeccceeeEEEeecchhhhhhc-cccccccCCCCCceEEEEecCCCeEE
Q 002942 292 DISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIA-KGRRKVKSSPSNDLKFIVIKSLPKLE 370 (863)
Q Consensus 292 ~i~L~p~etk~V~L~v~P~~~G~L~I~Gv~~~L~g~v~g~~~F~i~g~rl~~t-K~kr~~~~~pd~~L~~~V~~~~P~L~ 370 (863)
.|+++|+.--.|.|.=-|-.+|. =.||.|.+-.-+ |...=+..-+| +.. ..=|..+|+|.+. .++|..+
T Consensus 114 ~f~~pp~~P~SVtLQp~p~D~gK--pcGVdyevkaF~-~~s~edk~hKr-~sVrL~IRKvqyAP~~~------GpqP~~~ 183 (402)
T KOG3865|consen 114 TFEFPPNLPCSVTLQPGPEDTGK--PCGVDYEVKAFV-ADSEEDKIHKR-NSVRLVIRKVQYAPLEP------GPQPSAE 183 (402)
T ss_pred EEeCCCCCCceEEeccCCccCCC--cccceEEEEEEe-cCCcccccccc-cceeeeeeeeeecCCCC------CCCchhH
Confidence 45566666666666555666663 457777664210 10000000001 000 0122346666432 2455544
Q ss_pred EE--E--ec--------C-CccccCccEEEEEEEEEecCccccccEEEEecC-CceEEecc
Q 002942 371 GL--I--HP--------L-PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSH-PRFLSIGN 417 (863)
Q Consensus 371 v~--~--~~--------~-P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~-p~~~~~g~ 417 (863)
++ | +. + -..-|.||-..+.+.++|.++..++.|++.+-. .+.+.|.+
T Consensus 184 v~k~FlmS~~~lhLevsLDkEiYyHGE~isvnV~V~NNsnKtVKkIK~~V~Q~adi~Lfs~ 244 (402)
T KOG3865|consen 184 VSKQFLMSDGPLHLEVSLDKEIYYHGEPISVNVHVTNNSNKTVKKIKISVRQVADICLFST 244 (402)
T ss_pred hhHhhccCCCceEEEEEecchheecCCceeEEEEEecCCcceeeeeEEEeEeeceEEEEec
Confidence 32 1 11 1 235689999999999999999999999987764 44444433
No 145
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=33.72 E-value=1.3e+02 Score=34.24 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=46.1
Q ss_pred CccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcccC
Q 002942 382 AGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQ 461 (863)
Q Consensus 382 ~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~~~~L~ 461 (863)
-|-.-+++++++|.|..|+.-=...+..-+|+-..+....+..+|..+.-. . +.+..+..|+
T Consensus 280 PGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~-----------------G-L~v~d~~pI~ 341 (399)
T TIGR03079 280 PGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAE-----------------G-LEVDDQSAIA 341 (399)
T ss_pred CCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhc-----------------c-ceeCCCCCcC
Confidence 466778999999999998866555555555543211112233344432110 0 0112245699
Q ss_pred CCCeEEEEEEEEec
Q 002942 462 GETPLLWPLWYRAA 475 (863)
Q Consensus 462 pGes~~lPlwlra~ 475 (863)
|||++++.+-.+..
T Consensus 342 PGETr~v~v~aqdA 355 (399)
T TIGR03079 342 PGETVEVKMEAKDA 355 (399)
T ss_pred CCcceEEEEEEehh
Confidence 99999999998854
No 146
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=33.37 E-value=1.2e+02 Score=34.61 Aligned_cols=87 Identities=15% Similarity=0.187 Sum_probs=43.0
Q ss_pred EEEEEecCCccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCC
Q 002942 369 LEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMP 448 (863)
Q Consensus 369 L~v~~~~~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~ 448 (863)
+.+.+.+.- -=.-|-.-+++++++|.|..|+.-=...+..-+|+-..-..+ +...|+.+. +.
T Consensus 249 V~~~v~~A~-Y~vpgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~-~~~~P~~l~--------A~-------- 310 (381)
T PF04744_consen 249 VKVKVTDAT-YRVPGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTD-DPDYPDELL--------AE-------- 310 (381)
T ss_dssp EEEEEEEEE-EESSSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS--S---TTTE--------ET--------
T ss_pred eEEEEeccE-EecCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccC-CCCCchhhh--------cc--------
Confidence 555544211 123467779999999999999877666666665552211111 222232211 00
Q ss_pred cceeecCCCcccCCCCeEEEEEEEEe
Q 002942 449 QAVFSFPEGISIQGETPLLWPLWYRA 474 (863)
Q Consensus 449 ~~v~~~P~~~~L~pGes~~lPlwlra 474 (863)
.. +.+..+..|+|||++++.+-++.
T Consensus 311 ~g-L~vs~~~pI~PGETrtl~V~a~d 335 (381)
T PF04744_consen 311 RG-LSVSDNSPIAPGETRTLTVEAQD 335 (381)
T ss_dssp T--EEES--S-B-TT-EEEEEEEEE-
T ss_pred Cc-ceeCCCCCcCCCceEEEEEEeeh
Confidence 00 11222556999999999999974
No 147
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=33.00 E-value=65 Score=24.67 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 112 VHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 112 I~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..+.+|+.+..+|++++|++.|.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~ 26 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRR 26 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 357899999999999999988755
No 148
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=32.48 E-value=76 Score=33.03 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=22.5
Q ss_pred ccccCccEEEEEEEEEecCccccccEE
Q 002942 378 ERAYAGDLRHLVLELKNQSDFSVKNLK 404 (863)
Q Consensus 378 ~~ll~GEi~~~~l~L~N~g~~pl~~l~ 404 (863)
..+.=||...+.-+.+|.+..|+-..-
T Consensus 88 v~V~pGE~~~~~y~a~N~sd~~i~g~A 114 (188)
T PRK05089 88 VDVHPGELNLVFYEAENLSDRPIVGQA 114 (188)
T ss_pred EEEcCCCeEEEEEEEECCCCCcEEEEE
Confidence 357789999999999999998776543
No 149
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=32.40 E-value=38 Score=29.81 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=25.6
Q ss_pred HhHHHhhccchhcCCCcHHHHHHHHHHHhhhc
Q 002942 70 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYK 101 (863)
Q Consensus 70 AfhmVLAGhRyskagqr~hAlRCY~~A~~vY~ 101 (863)
|.-+|--|-...++|..+-|++||.+|++.|-
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~ 37 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQYFV 37 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 34455556778899999999999999998764
No 150
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=32.33 E-value=2.8e+02 Score=24.45 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=35.0
Q ss_pred EEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEEECCCceEEE
Q 002942 224 DIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILV 303 (863)
Q Consensus 224 ~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i~L~p~etk~V 303 (863)
.|.++||=.+++.++++.....+... . +.. ......+.++|.++..+
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~--~---------------v~~----------------~~~~~~~~i~~~~~~~v 47 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQ--R---------------VGT----------------GGSLPPFTIPARSSTTV 47 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSS--E---------------EEE----------------EEECE-EEESSSCEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCE--E---------------EEC----------------ccccCCeEECCCCcEEE
Confidence 47889999999999999988776421 0 010 01225799999999988
Q ss_pred EEEEE
Q 002942 304 QLMVT 308 (863)
Q Consensus 304 ~L~v~ 308 (863)
.+.+.
T Consensus 48 ~~~v~ 52 (101)
T PF03168_consen 48 PVPVS 52 (101)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87544
No 151
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=31.91 E-value=58 Score=28.09 Aligned_cols=45 Identities=11% Similarity=0.215 Sum_probs=30.0
Q ss_pred hHHHhhccchhcCCC-cHHHHHHHHHHHhhhcCCCccchhhhHHHHH
Q 002942 71 FHLVLSGDRYKKCDQ-INHAIRTYRSAVSVYKGSTWSHIKDHVHFHI 116 (863)
Q Consensus 71 fhmVLAGhRyskagq-r~hAlRCY~~A~~vY~~~~W~~~edHI~~tL 116 (863)
-++--|-.++..-|. ++...-..++-+.+|.+. |.+|||-=+-.|
T Consensus 9 ~R~daA~dam~~lG~~~~~v~~vl~~LL~lY~~n-W~lIEed~Y~~L 54 (65)
T PF10440_consen 9 ERIDAALDAMRQLGFSKKQVRPVLKNLLKLYDGN-WELIEEDNYRVL 54 (65)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-chhhhcccHHHH
Confidence 344455556666666 445556778999999766 999998544333
No 152
>PRK15331 chaperone protein SicA; Provisional
Probab=31.83 E-value=31 Score=35.12 Aligned_cols=23 Identities=9% Similarity=0.049 Sum_probs=17.8
Q ss_pred hccchhcCCCcHHHHHHHHHHHh
Q 002942 76 SGDRYKKCDQINHAIRTYRSAVS 98 (863)
Q Consensus 76 AGhRyskagqr~hAlRCY~~A~~ 98 (863)
||.=|-+-|++..|+.||..|..
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 56666677788888888888886
No 153
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=31.78 E-value=2.6e+02 Score=24.96 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=24.8
Q ss_pred eecCceEEEEEEEeCcccccEEeeeEEEEEEEe
Q 002942 215 CVAGEPVKVDIEFKNPLQIPISISNISLICELS 247 (863)
Q Consensus 215 ~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~ 247 (863)
+.+|++..+.|..++-..-++....-.+.++..
T Consensus 17 ~~~g~~~~F~V~~~d~~g~~~~~~~~~~~v~i~ 49 (101)
T PF00630_consen 17 AVVGEPATFTVDTRDAGGNPVSSGGDEFQVTIT 49 (101)
T ss_dssp EETTSEEEEEEEETTTTSSBEESTSSEEEEEEE
T ss_pred eECCCcEEEEEEEccCCCCccccCCceeEEEEe
Confidence 489999999999999988877765444444443
No 154
>PF12735 Trs65: TRAPP trafficking subunit Trs65; InterPro: IPR024662 This family is one of the subunits of the TRAPP Golgi trafficking complex []. TRAPP subunits are found in two different sized complexes, TRAPP I and TRAPP II. While both complexes contain the same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p and Trs85p, with TRAPPC human equivalents, TRAPP II has the additional three subunits ,Trs65p, Trs120p and Trs130p []. While it has been implicated in cell wall biogenesis and stress response, the role of Trs65 in TRAPP II is supported by the findings that the protein co-localises with Trs130p, and deletion of TRS65 in yeast leads to a conditional lethal phenotype if either one of the other TRAPP II-specific subunits is modified []. Furthermore, the trs65 mutant has reduced Ypt31/32p guanine nucleotide exchange, GEF, activity []. Trs65 is also known as killer toxin-resistance protein 11.
Probab=31.38 E-value=3.1e+02 Score=30.65 Aligned_cols=115 Identities=12% Similarity=-0.010 Sum_probs=63.0
Q ss_pred eEEEEEecCCccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchh--------hhhcc-cccccc
Q 002942 368 KLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPA--------CLQKM-TNAEQS 438 (863)
Q Consensus 368 ~L~v~~~~~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~--------~l~~~-~~~e~~ 438 (863)
-+.++|. .|..+.-||....+|-+-|.|..+.+-.-++.+ ++-...... .....-+. ..+.. ++.+..
T Consensus 157 gv~~sF~-gp~~V~~Ge~F~w~v~ivN~S~~~r~L~l~~~~-~r~~~~~~~-~~~~~~~~~s~~~~~~~~~~~v~~en~~ 233 (306)
T PF12735_consen 157 GVTFSFS-GPSSVKVGEPFSWKVFIVNRSSSPRKLALYVPP-RRRRNDERS-NSPPPNPSSSSNLNNKQIADAVTDENIV 233 (306)
T ss_pred CeEEEEe-CCceEecCCeEEEEEEEEECCCCCeeEEEEecC-ccccccccc-cCCCCCcccccccccccccccceehhHH
Confidence 3455565 468999999999999999999987765555544 211111110 00000000 00000 000000
Q ss_pred ccC-CCCCCC-CcceeecCCC---cccCCCCeEEEEEEEEecCCceeEEEEE
Q 002942 439 VAG-GNFNKM-PQAVFSFPEG---ISIQGETPLLWPLWYRAAVPGKISLSIT 485 (863)
Q Consensus 439 ~~~-~~~~~~-~~~v~~~P~~---~~L~pGes~~lPlwlra~~~G~~~l~lL 485 (863)
..- ...... ...++.+..+ +.|.||+..+.-|-+=|-.+|.+.|.-|
T Consensus 234 ~~~~~~~~~~~~~gli~LsnDiriGpL~P~~c~~~eL~fi~l~~G~~~L~~l 285 (306)
T PF12735_consen 234 QAMQKYSSVEESTGLICLSNDIRIGPLAPGACYSVELRFIALSPGVHNLEGL 285 (306)
T ss_pred HHhhhhcccccCCceEEecccccccccCCCceEEEEEEEEEeccceEeecce
Confidence 000 000000 1234444333 4799999999999999999999988655
No 155
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=31.23 E-value=43 Score=23.64 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=24.7
Q ss_pred HHhhccchhcCCCcHHHHHHHHHHHhhhc
Q 002942 73 LVLSGDRYKKCDQINHAIRTYRSAVSVYK 101 (863)
Q Consensus 73 mVLAGhRyskagqr~hAlRCY~~A~~vY~ 101 (863)
+.+-|.-|.+-|+...|+.+|++|+++-.
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 34567889999999999999999998754
No 156
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=31.14 E-value=1.4e+02 Score=28.69 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=40.4
Q ss_pred HhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhh----------------hHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 74 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKD----------------HVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 74 VLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~ed----------------HI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+-.|++-..+|...-++.+|++|+.+|+|.-+.-+.+ .+...++..+...|+++.|++.+.+
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 4456666778889999999999999999843332211 1334556667788999999877654
No 157
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=31.07 E-value=2.5e+02 Score=26.32 Aligned_cols=72 Identities=15% Similarity=0.193 Sum_probs=39.2
Q ss_pred ccCccEEE-EEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCc
Q 002942 380 AYAGDLRH-LVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGI 458 (863)
Q Consensus 380 ll~GEi~~-~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~~~ 458 (863)
+-.|.++- .++.|.|.+..+.. +.+.+..+.-+.+ ..-....
T Consensus 26 ~~dg~I~N~Y~lkl~Nkt~~~~~-~~i~~~g~~~~~l------------------------------------~~~~~~i 68 (118)
T PF11614_consen 26 LSDGSIRNQYTLKLTNKTNQPRT-YTISVEGLPGAEL------------------------------------QGPENTI 68 (118)
T ss_dssp ----SEEEEEEEEEEE-SSS-EE-EEEEEES-SS-EE-------------------------------------ES--EE
T ss_pred cCCCeEEEEEEEEEEECCCCCEE-EEEEEecCCCeEE------------------------------------ECCCcce
Confidence 45577764 57999999987654 4444443311111 0001234
Q ss_pred ccCCCCeEEEEEEEEec-C---CceeEEEEEEEE
Q 002942 459 SIQGETPLLWPLWYRAA-V---PGKISLSITIYY 488 (863)
Q Consensus 459 ~L~pGes~~lPlwlra~-~---~G~~~l~lLfyY 488 (863)
.|+||++.++|+.+.+| . .|.+.+.|-+..
T Consensus 69 ~v~~g~~~~~~v~v~~p~~~~~~~~~~i~f~v~~ 102 (118)
T PF11614_consen 69 TVPPGETREVPVFVTAPPDALKSGSTPITFTVTD 102 (118)
T ss_dssp EE-TT-EEEEEEEEEE-GGG-SSSEEEEEEEEEE
T ss_pred EECCCCEEEEEEEEEECHHHccCCCeeEEEEEEE
Confidence 58999999999999998 2 367788888773
No 158
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=30.80 E-value=1.3e+02 Score=35.39 Aligned_cols=63 Identities=17% Similarity=0.139 Sum_probs=43.5
Q ss_pred HHHHHHHHHhccchHHHHHHHHhHhCcch-hhHH-HHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHH
Q 002942 16 GLWWVEMLKARHQYKDAATVYFRICGEEP-LHSA-VMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTY 93 (863)
Q Consensus 16 all~~E~lk~~~~~~eAa~~Lir~tsed~-L~SA-LLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY 93 (863)
.+-.+-.|...|.|.||.+.+-++-..++ ...| ..+-.-|.| |.+.|+...|+.||
T Consensus 78 ~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAca----------------------ya~LGr~dEAla~L 135 (453)
T PLN03098 78 AVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACC----------------------HAYREEGKKAADCL 135 (453)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH----------------------HHHcCCHHHHHHHH
Confidence 34456677888999999998877655443 2111 333333333 45789999999999
Q ss_pred HHHHhhh
Q 002942 94 RSAVSVY 100 (863)
Q Consensus 94 ~~A~~vY 100 (863)
++|+..|
T Consensus 136 rrALels 142 (453)
T PLN03098 136 RTALRDY 142 (453)
T ss_pred HHHHHhc
Confidence 9999974
No 159
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=30.48 E-value=3.2e+02 Score=25.27 Aligned_cols=76 Identities=13% Similarity=0.283 Sum_probs=49.2
Q ss_pred CccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcccC
Q 002942 382 AGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQ 461 (863)
Q Consensus 382 ~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~~~~L~ 461 (863)
.+...++.+.+.|.+..++.++.+...-|..+.+. +.. +.+..|.
T Consensus 22 ~~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~----------------------------------l~~-~s~~~i~ 66 (115)
T PF02883_consen 22 NPNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQ----------------------------------LQP-PSSSTIP 66 (115)
T ss_dssp ETTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEE----------------------------------EEE-SS-SSB-
T ss_pred CCCEEEEEEEEEECCCCCcceEEEEEEeccccEEE----------------------------------EeC-CCCCeeC
Confidence 67888999999999999999999886555222211 111 1255688
Q ss_pred CCCeEEEEEEEEe-----cCCceeEEEEEEEEeeCC
Q 002942 462 GETPLLWPLWYRA-----AVPGKISLSITIYYEMGD 492 (863)
Q Consensus 462 pGes~~lPlwlra-----~~~G~~~l~lLfyYe~~~ 492 (863)
||+..+--+-+.. +......+++-+.|.-.+
T Consensus 67 p~~~i~Q~~~v~~~~~~~~~~~~l~~~~~vsy~~~g 102 (115)
T PF02883_consen 67 PGQQITQVIKVENSPFSEPTPKPLKPRLRVSYNVGG 102 (115)
T ss_dssp TTTEEEEEEEEEESS-BSTTSSTTEEEEEEEEEETT
T ss_pred CCCeEEEEEEEEEeecccCCCCCcCeEEEEEEEECC
Confidence 8888887777777 444455677777776654
No 160
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=30.48 E-value=71 Score=32.69 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=39.7
Q ss_pred ccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 77 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 77 GhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|+.|.+.|.+..|++||.+++. | ..+... .=++.+++-|.+...+++.....++-+
T Consensus 43 ~~~~~~~Gd~~~A~k~y~~~~~-~-~~~~~~-~id~~l~~irv~i~~~d~~~v~~~i~k 98 (177)
T PF10602_consen 43 ADHYCKIGDLEEALKAYSRARD-Y-CTSPGH-KIDMCLNVIRVAIFFGDWSHVEKYIEK 98 (177)
T ss_pred HHHHHHhhhHHHHHHHHHHHhh-h-cCCHHH-HHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5668899999999999999886 3 222111 113567788999999998887665533
No 161
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.39 E-value=3e+02 Score=28.50 Aligned_cols=83 Identities=19% Similarity=0.135 Sum_probs=53.7
Q ss_pred CCceeecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeee
Q 002942 211 ESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSE 290 (863)
Q Consensus 211 ~~~~~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 290 (863)
.....+.|+.+.|.+++.|-=+- ...||+|.=..-+.+++. ..+|. .+.
T Consensus 30 l~~~~v~g~~v~V~~~iyN~G~~--~A~dV~l~D~~fp~~~F~-------------------------lvsG~----~s~ 78 (181)
T PF05753_consen 30 LNKYLVEGEDVTVTYTIYNVGSS--AAYDVKLTDDSFPPEDFE-------------------------LVSGS----LSA 78 (181)
T ss_pred ccccccCCcEEEEEEEEEECCCC--eEEEEEEECCCCCccccE-------------------------eccCc----eEE
Confidence 34567789999999999997554 445666541000100000 00110 011
Q ss_pred eeEEECCCceEEEEEEEEeCceeEEEEEEEEEEe
Q 002942 291 VDISLGGAETILVQLMVTPKVEGILKIVGVRWRL 324 (863)
Q Consensus 291 ~~i~L~p~etk~V~L~v~P~~~G~L~I~Gv~~~L 324 (863)
.-=.|.|++..+..+.++|+..|.+.+.....+.
T Consensus 79 ~~~~i~pg~~vsh~~vv~p~~~G~f~~~~a~VtY 112 (181)
T PF05753_consen 79 SWERIPPGENVSHSYVVRPKKSGYFNFTPAVVTY 112 (181)
T ss_pred EEEEECCCCeEEEEEEEeeeeeEEEEccCEEEEE
Confidence 1236999999999999999999999998877665
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=28.76 E-value=99 Score=26.81 Aligned_cols=46 Identities=15% Similarity=0.264 Sum_probs=36.4
Q ss_pred CCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHH
Q 002942 84 DQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHM 133 (863)
Q Consensus 84 gqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~ 133 (863)
|+.+-|+..|.+++...... . ++-+.+.||+.++.+|+++.|+.-+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~---~-~~~~~~~la~~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTN---P-NSAYLYNLAQCYFQQGKYEEAIELL 48 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGT---H-HHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCC---h-hHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56677888899988887652 2 4456777999999999999998776
No 163
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=28.42 E-value=70 Score=22.08 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHH
Q 002942 113 HFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 113 ~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.|.+|+.+..+|+.++|++.|-+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~ 25 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQR 25 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHH
Confidence 57899999999999999987643
No 164
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=27.77 E-value=60 Score=23.78 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=23.9
Q ss_pred HHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHH
Q 002942 92 TYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAV 130 (863)
Q Consensus 92 CY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av 130 (863)
||++|++.--+- --.++.||..+...|++++|+
T Consensus 1 ~y~kAie~~P~n------~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNN------AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCC------HHHHHHHHHHHHHCcCHHhhc
Confidence 677777653211 125688999999999999986
No 165
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=27.59 E-value=3e+02 Score=22.26 Aligned_cols=59 Identities=14% Similarity=0.190 Sum_probs=38.1
Q ss_pred HHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHHHh
Q 002942 19 WVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVS 98 (863)
Q Consensus 19 ~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~ 98 (863)
.+..+-..|.|.+|...|-++...++- .+-.+-.. |.-|...|+...|+..|++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~l----------------------g~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLL----------------------GRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHH----------------------HHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHH
Confidence 456667788899998888777766551 12222222 2333366788889999999887
Q ss_pred hh
Q 002942 99 VY 100 (863)
Q Consensus 99 vY 100 (863)
.+
T Consensus 60 ~~ 61 (65)
T PF13432_consen 60 LD 61 (65)
T ss_dssp HS
T ss_pred HC
Confidence 65
No 166
>PRK13203 ureB urease subunit beta; Reviewed
Probab=26.77 E-value=1.6e+02 Score=27.64 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=39.7
Q ss_pred CccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCC
Q 002942 377 PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPE 456 (863)
Q Consensus 377 P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~ 456 (863)
|..+..| ...++|+++|.|..|+. +-||-.|+-... .++|-...++. .=+++|.
T Consensus 12 ~I~ln~g-r~~~~l~V~NtGDRPIQ----VGSH~HF~E~N~----aL~FDR~~A~G-----------------~RLdIpa 65 (102)
T PRK13203 12 EIELNAG-RETVTLTVANTGDRPIQ----VGSHYHFFEVNP----ALSFDREAARG-----------------MRLNIPA 65 (102)
T ss_pred CEEeCCC-CCEEEEEEEeCCCCceE----EccccchhhcCc----chhccHhhhcC-----------------cccccCC
Confidence 3344444 35689999999998864 346766652211 11221111110 1123442
Q ss_pred --CcccCCCCeEEEEEEEE
Q 002942 457 --GISIQGETPLLWPLWYR 473 (863)
Q Consensus 457 --~~~L~pGes~~lPlwlr 473 (863)
....+||+++++.|-=-
T Consensus 66 GTavRFEPG~~k~V~LV~~ 84 (102)
T PRK13203 66 GTAVRFEPGQTREVELVPL 84 (102)
T ss_pred CCeEeECCCCeEEEEEEEc
Confidence 35789999999988643
No 167
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=26.28 E-value=97 Score=19.66 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 112 VHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 112 I~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.++.+|..+..+|+++.|+.++..
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~ 26 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEK 26 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 457889999999999999988754
No 168
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=26.21 E-value=98 Score=22.70 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHH
Q 002942 114 FHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 114 ~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..||+.+..+|+++.|+..+-+
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 5799999999999999977644
No 169
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.06 E-value=2.2e+02 Score=31.75 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 112 VHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 112 I~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+-|.|+.|+...|+.+.|+.||+.
T Consensus 238 aa~~lA~~~~~~g~~e~Ale~Ll~ 261 (304)
T COG3118 238 AALALADQLHLVGRNEAALEHLLA 261 (304)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 789999999999999999999877
No 170
>PRK04841 transcriptional regulator MalT; Provisional
Probab=25.83 E-value=3.7e+02 Score=34.13 Aligned_cols=58 Identities=10% Similarity=-0.015 Sum_probs=40.5
Q ss_pred ccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 77 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 77 GhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.-+...|+...|..++.+|+.+++..+. ...-.....+|+.....|+.+.|.+++.+
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQP-QQQLQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33344458889999999999888775432 12224555678888889999998877644
No 171
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=25.47 E-value=1.4e+02 Score=35.21 Aligned_cols=62 Identities=18% Similarity=0.226 Sum_probs=57.7
Q ss_pred hhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 68 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 68 KyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+=.+.+.++|.-|-++|+.+-|.--|+.|+..+-+..| +-+.+|+.+..+|++.+|++.+-+
T Consensus 338 ~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~------l~~~~a~all~~g~~~eai~~L~~ 399 (484)
T COG4783 338 DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPL------LQLNLAQALLKGGKPQEAIRILNR 399 (484)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH------HHHHHHHHHHhcCChHHHHHHHHH
Confidence 67889999999999999999999999999999998888 778999999999999999988765
No 172
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=25.30 E-value=2e+02 Score=26.38 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=15.7
Q ss_pred EEeCCCceeEEEeEEEEecceeeecC
Q 002942 798 VRLQPMSTTDIAMKVCLFSPGTYDLS 823 (863)
Q Consensus 798 ~~l~p~~~~~~~L~~~~~~~GvYdl~ 823 (863)
..|+||++..+.+ -...||+|++-
T Consensus 68 ~~l~~g~~~~~~f--~~~~~G~y~~~ 91 (104)
T PF13473_consen 68 KVLPPGETATVTF--TPLKPGEYEFY 91 (104)
T ss_dssp EEE-TT-EEEEEE--EE-S-EEEEEB
T ss_pred EEECCCCEEEEEE--cCCCCEEEEEE
Confidence 5799999987775 46899999874
No 173
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=25.19 E-value=65 Score=28.57 Aligned_cols=33 Identities=9% Similarity=0.079 Sum_probs=27.5
Q ss_pred HhHHHhhccchhcCCCcHHHHHHHHHHHhhhcC
Q 002942 70 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG 102 (863)
Q Consensus 70 AfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~ 102 (863)
|.-++.-+-...++|...-|++||..|++++-.
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 445566677889999999999999999998755
No 174
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=25.05 E-value=1.6e+02 Score=28.74 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=38.0
Q ss_pred HHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHH
Q 002942 17 LWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSA 96 (863)
Q Consensus 17 ll~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A 96 (863)
+..+.++-..|.|.+|...|-++...++ ..+....-.|.-|.+.|+...|+.+|.+|
T Consensus 62 ~~lg~~~~~~g~~~~A~~~y~~Al~l~p-----------------------~~~~a~~~lg~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 62 IALAGTWMMLKEYTTAINFYGHALMLDA-----------------------SHPEPVYQTGVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCC-----------------------CCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555556666666665544443322 23344444455666789999999999999
Q ss_pred Hhhh
Q 002942 97 VSVY 100 (863)
Q Consensus 97 ~~vY 100 (863)
+.+-
T Consensus 119 l~~~ 122 (144)
T PRK15359 119 IKMS 122 (144)
T ss_pred HHhC
Confidence 9753
No 175
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=24.91 E-value=1.3e+02 Score=28.05 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=16.8
Q ss_pred eeeeEEECCCceEEEEEEEEeCc
Q 002942 289 SEVDISLGGAETILVQLMVTPKV 311 (863)
Q Consensus 289 ~~~~i~L~p~etk~V~L~v~P~~ 311 (863)
....|+++|++++.|.+.+.|..
T Consensus 60 ~~~~vTV~ag~s~~v~vti~~p~ 82 (112)
T PF06280_consen 60 SPDTVTVPAGQSKTVTVTITPPS 82 (112)
T ss_dssp --EEEEE-TTEEEEEEEEEE--G
T ss_pred CCCeEEECCCCEEEEEEEEEehh
Confidence 34689999999999999999954
No 176
>PRK14574 hmsH outer membrane protein; Provisional
Probab=24.88 E-value=3.7e+02 Score=34.34 Aligned_cols=115 Identities=10% Similarity=0.023 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHhHhCcchhh-HHHHHHHHHhhhhccCCCcch----hh-------HhHHHhhccchh
Q 002942 14 RCGLWWVEMLKARHQYKDAATVYFRICGEEPLH-SAVMLEQASYCYLLSKPPMLH----KY-------GFHLVLSGDRYK 81 (863)
Q Consensus 14 R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~-SALLLEQAA~c~L~~~ppm~R----Ky-------AfhmVLAGhRys 81 (863)
......+-+.-..|.|.+|-..|-++..-++.- .++. ..+.+.....+.+.-+ |+ .-=+...|..|.
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 344555566666788998888888887665522 1222 2222211111222222 22 222333477999
Q ss_pred cCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 82 KCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 82 kagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..|+..-|+..|++++...-+. ..+.+.|+..+..+++.+.|++.+.+
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n------~~~l~gLa~~y~~~~q~~eAl~~l~~ 161 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTN------PDLISGMIMTQADAGRGGVVLKQATE 161 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 9999999999999999876554 24445667788888888888766544
No 177
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=24.87 E-value=4.1e+02 Score=30.59 Aligned_cols=113 Identities=10% Similarity=-0.019 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCc--chhhHHHHHHHHHhhhhccCCCc----c-------hhhHhH-HHhhccch
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGE--EPLHSAVMLEQASYCYLLSKPPM----L-------HKYGFH-LVLSGDRY 80 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tse--d~L~SALLLEQAA~c~L~~~ppm----~-------RKyAfh-mVLAGhRy 80 (863)
.++.-+-+--..|.|..|-+.+.+.... +++...++.-++|+ .+.++.. + +..... ..+.+.-+
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~--~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQ--QRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 3455555556678899998888876652 33667777777766 2111100 0 000000 11123333
Q ss_pred hcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 81 KKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 81 skagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
-..|+...|+.-+...++.+-... ++...+|+.+...|+++.|.+.+-.
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~------~~l~ll~~~~~~~~d~~~a~~~l~~ 212 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHK------EVLKLAEEAYIRSGAWQALDDIIDN 212 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 446667777777777776653322 4788999999999999988876544
No 178
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=24.87 E-value=3.1e+02 Score=35.22 Aligned_cols=106 Identities=20% Similarity=0.235 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhC
Q 002942 45 LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLG 124 (863)
Q Consensus 45 L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg 124 (863)
..=|+-+=|.|| .++-..|++ =++||+|=|.|-.. +. |-..|.-+....-=..+.-|=.|-+||-++.+|
T Consensus 252 ~~~~~~ll~~ay-~~n~~nP~~-----l~~LAn~fyfK~dy-~~---v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G 321 (1018)
T KOG2002|consen 252 YKKGVQLLQRAY-KENNENPVA-----LNHLANHFYFKKDY-ER---VWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG 321 (1018)
T ss_pred HHHHHHHHHHHH-hhcCCCcHH-----HHHHHHHHhhcccH-HH---HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc
Confidence 666666667776 344444654 46788888877542 22 223333332223222344455799999999999
Q ss_pred CHHHHHHHHHHhcCCCCccCCCccceEecCccEEEecC
Q 002942 125 MHDIAVAHMLEKTGKTFEVVKPRLPIINISSLKVIFED 162 (863)
Q Consensus 125 ~~~~Av~h~l~~~~~~~~~~~LpLP~i~~~~~~V~~~~ 162 (863)
|++.|.++++.......+- .-||.+-..++.+.-++
T Consensus 322 d~ekA~~yY~~s~k~~~d~--~~l~~~GlgQm~i~~~d 357 (1018)
T KOG2002|consen 322 DFEKAFKYYMESLKADNDN--FVLPLVGLGQMYIKRGD 357 (1018)
T ss_pred cHHHHHHHHHHHHccCCCC--ccccccchhHHHHHhch
Confidence 9999999998855433222 34666655555555554
No 179
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=24.34 E-value=72 Score=38.83 Aligned_cols=62 Identities=21% Similarity=0.290 Sum_probs=44.0
Q ss_pred HhhccchhcCCCcHHHHHHHHHHHhhhcC---------CCccch-------------------hhhHHHHHHHHHHHhCC
Q 002942 74 VLSGDRYKKCDQINHAIRTYRSAVSVYKG---------STWSHI-------------------KDHVHFHIGQWYAVLGM 125 (863)
Q Consensus 74 VLAGhRyskagqr~hAlRCY~~A~~vY~~---------~~W~~~-------------------edHI~~tLGrq~~~Lg~ 125 (863)
+-+|--|.+.|++..|++.|.+|.-+=.. +--..+ |--+|+-||+-+-.+|+
T Consensus 527 ~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 527 CHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGN 606 (638)
T ss_pred hhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc
Confidence 34577888999999999999988753111 000001 22388899999999999
Q ss_pred HHHHHHHHHH
Q 002942 126 HDIAVAHMLE 135 (863)
Q Consensus 126 ~~~Av~h~l~ 135 (863)
.+.|+.||.-
T Consensus 607 ~~~Al~~f~~ 616 (638)
T KOG1126|consen 607 TDLALLHFSW 616 (638)
T ss_pred chHHHHhhHH
Confidence 9999999854
No 180
>PRK13204 ureB urease subunit beta; Reviewed
Probab=24.34 E-value=1.9e+02 Score=29.01 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=41.2
Q ss_pred cCCccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeec
Q 002942 375 PLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSF 454 (863)
Q Consensus 375 ~~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~ 454 (863)
.-+..+..|. ..++|+++|.|..||. +-||-.|+-.. ..+.|-...++. .=+++
T Consensus 33 ~~~I~lN~gr-~~~~l~V~NtGDRPIQ----VGSHyHF~EvN----~aL~FDR~~A~G-----------------~RLdI 86 (159)
T PRK13204 33 KDPIEINQGR-PRTTLTVRNTGDRPIQ----IGSHFHFFEVN----RYLEFDRSKAFG-----------------LRLDI 86 (159)
T ss_pred CCCeEeCCCC-cEEEEEEEeCCCCceE----eccccchhhcC----ccccccHhhhcC-----------------ccccc
Confidence 3344555553 4589999999998874 34676665221 112221111111 11234
Q ss_pred CC--CcccCCCCeEEEEEEEE
Q 002942 455 PE--GISIQGETPLLWPLWYR 473 (863)
Q Consensus 455 P~--~~~L~pGes~~lPlwlr 473 (863)
|. ....+||+++++.|.=-
T Consensus 87 PAGTAVRFEPG~~k~V~LV~~ 107 (159)
T PRK13204 87 PANTAVRFEPGDEKEVTLVPF 107 (159)
T ss_pred CCCCeEeECCCCeeEEEEEEc
Confidence 42 35789999999998643
No 181
>PRK04841 transcriptional regulator MalT; Provisional
Probab=23.87 E-value=4.5e+02 Score=33.33 Aligned_cols=62 Identities=13% Similarity=-0.050 Sum_probs=50.5
Q ss_pred HhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 74 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 74 VLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
...|.-|...|+..-|...|.+|+...+..+...-.-.++..+|..+..+|+.+.|..+|.+
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34566678889999999999999999887776554445677789999999999999988876
No 182
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=23.50 E-value=1e+02 Score=35.84 Aligned_cols=62 Identities=18% Similarity=0.214 Sum_probs=50.0
Q ss_pred hhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHH
Q 002942 68 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVA 131 (863)
Q Consensus 68 KyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~ 131 (863)
..++-+.|-|.|.-|+|.-.--+..|+.|+||= ..=--.-.-|+-.||--++.|+|+..|++
T Consensus 15 ~SCleLalEGERLck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~ 76 (639)
T KOG1130|consen 15 RSCLELALEGERLCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALK 76 (639)
T ss_pred hHHHHHHHHHHHHHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHh
Confidence 447788999999999999999999999999982 11111122488899999999999999986
No 183
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=23.47 E-value=3.7e+02 Score=30.89 Aligned_cols=110 Identities=11% Similarity=-0.022 Sum_probs=68.4
Q ss_pred HHHHHHHHHhccchHHHHHHHHhHhCc--chhhHHHHHHHHHh---------hhhc-c--CCCcchhhHhHHHhhccchh
Q 002942 16 GLWWVEMLKARHQYKDAATVYFRICGE--EPLHSAVMLEQASY---------CYLL-S--KPPMLHKYGFHLVLSGDRYK 81 (863)
Q Consensus 16 all~~E~lk~~~~~~eAa~~Lir~tse--d~L~SALLLEQAA~---------c~L~-~--~ppm~RKyAfhmVLAGhRys 81 (863)
.+.-+-+...-|.|..|-+.+.+.... .+.-..++.-++|+ -|+. + .+|.-+ .+ ..++++.-|.
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~-~~-~~l~~a~l~l 164 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ-LP-VEITRVRIQL 164 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch-HH-HHHHHHHHHH
Confidence 344444555569999888877775542 23333444444432 1221 1 112111 11 3345678888
Q ss_pred cCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHH
Q 002942 82 KCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHM 133 (863)
Q Consensus 82 kagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~ 133 (863)
..|+...|+..|.++....-+.. .....+++.+...|+.+.|++.+
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~~------~al~ll~~~~~~~gdw~~a~~~l 210 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRHP------EVLRLAEQAYIRTGAWSSLLDIL 210 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHHhHHHHHHHH
Confidence 89999999999999988765544 36677888888889999988543
No 184
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=23.42 E-value=9.2e+02 Score=25.70 Aligned_cols=100 Identities=6% Similarity=0.024 Sum_probs=58.9
Q ss_pred cccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCc
Q 002942 379 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGI 458 (863)
Q Consensus 379 ~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~~~ 458 (863)
.+|.|+-....++|+|.|..|. -+.+ ++.+..+. + ....+..|.-.
T Consensus 33 vi~~~~~~~~si~v~N~~~~p~---lvQ~------wv~~~~~~----~---------------------~~~fivtPPl~ 78 (230)
T PRK09918 33 VIVEESDGEGSINVKNTDSNPI---LLYT------TLVDLPED----K---------------------SKLLLVTPPVA 78 (230)
T ss_pred EEEECCCCeEEEEEEcCCCCcE---EEEE------EEecCCCC----C---------------------CCCEEEcCCeE
Confidence 4788999999999999998662 1111 22111100 0 01233345567
Q ss_pred ccCCCCeEEEEEEEEec-CCceeEEEEEEEEeeCCCC---CcceEEEEEEEEEEEEece
Q 002942 459 SIQGETPLLWPLWYRAA-VPGKISLSITIYYEMGDVS---SVIKYRLLRMHYNLEVLPS 513 (863)
Q Consensus 459 ~L~pGes~~lPlwlra~-~~G~~~l~lLfyYe~~~~~---~~~~~R~~R~~~~i~V~pS 513 (863)
.|+||+...+-+-..+. ...+.++.+|...|-+... ..+.. .+|+..-+.+.|.
T Consensus 79 rl~pg~~q~vRii~~~~lp~drEs~f~l~v~~IP~~~~~~~~l~i-a~r~~iklfyRP~ 136 (230)
T PRK09918 79 RVEPGQSQQVRFILKSGSPLNTEHLLRVSFEGVPPKPGGKNKVVM-PIRQDLPVLIQPA 136 (230)
T ss_pred EECCCCceEEEEEECCCCCCCeeEEEEEEEEEcCCCCCCCCEEEE-EEEeEEEEEEeCC
Confidence 79999999998877665 4456667777777665322 22323 3455555555554
No 185
>PF04442 CtaG_Cox11: Cytochrome c oxidase assembly protein CtaG/Cox11; InterPro: IPR007533 Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein. In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units []. The C-terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae (P19516 from SWISSPROT). Met 224 is also thought to play a role in copper transfer or stabilising the copper site [].; GO: 0005507 copper ion binding; PDB: 1SO9_A 1SP0_A.
Probab=23.33 E-value=4e+02 Score=26.89 Aligned_cols=83 Identities=19% Similarity=0.261 Sum_probs=38.7
Q ss_pred eEEEEecCCCeEEEEEecC--CccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccc
Q 002942 358 LKFIVIKSLPKLEGLIHPL--PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNA 435 (863)
Q Consensus 358 L~~~V~~~~P~L~v~~~~~--P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~ 435 (863)
...++.+.|||= |... ...+-=||...+.-+.+|.+..|+....+=.=.| +....
T Consensus 42 F~a~~~~~lpW~---F~P~q~~v~V~pGe~~~~~y~a~N~s~~~i~g~A~~nV~P-----~~a~~--------------- 98 (152)
T PF04442_consen 42 FDANVNPGLPWE---FKPEQRSVKVHPGETALVFYEATNPSDKPITGQAIPNVTP-----GEAGK--------------- 98 (152)
T ss_dssp EEEEE-TTS-EE---EE-S-SEEEEETT--EEEEEEEEE-SSS-EE---EEEE-S-----SS-ST---------------
T ss_pred EEeecCCCCceE---EEeeeeeEEeCCCCEEEEEEEEECCCCCcEEEEEeeeECH-----HHhhh---------------
Confidence 344555666653 3211 2357789999999999999998876544332222 11110
Q ss_pred cccccCCCCCCCCcceeecCCCcccCCCCeEEEEEEEE
Q 002942 436 EQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYR 473 (863)
Q Consensus 436 e~~~~~~~~~~~~~~v~~~P~~~~L~pGes~~lPlwlr 473 (863)
=+++.....|. ...|+|||++++|+.+-
T Consensus 99 -------YF~KieCFCF~---eQ~L~pgE~~~mPv~F~ 126 (152)
T PF04442_consen 99 -------YFNKIECFCFE---EQTLAPGETVDMPVVFY 126 (152)
T ss_dssp -------TECCS-TTS-S-----EE-TT-EEEEEEEEE
T ss_pred -------hccccceEecc---CcCcCCCCeEEEEEEEE
Confidence 11122222332 56799999999998654
No 186
>KOG3620 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.33 E-value=1.8e+02 Score=37.97 Aligned_cols=103 Identities=23% Similarity=0.214 Sum_probs=58.8
Q ss_pred ccCCceeecCceEEEEEEEeCcccccEEeeeEEEEEEEecCC-Cccc--cCCC-----CCcc-ccccccccccccccccc
Q 002942 209 FEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRS-DEME--SDSN-----SSTT-ELQNDEESKLLTTTGEM 279 (863)
Q Consensus 209 ~~~~~~~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~-~~~~--~~~~-----~~~~-~~~~~~~~~~p~~~~~~ 279 (863)
.-+.+....|..-.+.++|.||=++||.|.=|-|..--.++. -... .... .+++ ++.-....++|...+ +
T Consensus 690 ~l~FPaTalg~~~i~~iTL~NPs~vPV~lQ~iPL~lYpdpe~lV~Lt~r~~~~ev~misltT~eFtlk~~sa~P~~~g-~ 768 (1626)
T KOG3620|consen 690 ILPFPATALGQVQIQWITLTNPSQVPVLLQYIPLVLYPDPEFLVRLTQRSLPHEVIMISLTTCEFTLKEVSALPEAYG-L 768 (1626)
T ss_pred CCCCchhhccceeEEEEEecCCCCCceEeeeeeecccCCHHHHHHHHHhhccceeEEEeeeeeEEEeeccccCchhhc-c
Confidence 445777889999999999999999999999887764211110 0000 0000 0010 000001123343111 1
Q ss_pred CCCCCceeeeeeeEEECCCceEEEEEEEEeCceeE
Q 002942 280 NSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGI 314 (863)
Q Consensus 280 ~~~~~~f~~~~~~i~L~p~etk~V~L~v~P~~~G~ 314 (863)
..+.+.| .+..+.|.|+|+++|.+.++|..-+.
T Consensus 769 ~~e~sR~--~iL~liLkPgekkrv~v~FtP~dy~k 801 (1626)
T KOG3620|consen 769 NHEMSRY--NILPLILKPGEKKRVPVTFTPQDYEK 801 (1626)
T ss_pred ccccccc--ccceeeecCccceeeeeeeeccCccc
Confidence 1111111 13579999999999999999997754
No 187
>PRK13198 ureB urease subunit beta; Reviewed
Probab=23.21 E-value=2.1e+02 Score=28.75 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=42.6
Q ss_pred EecCCccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCccee
Q 002942 373 IHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVF 452 (863)
Q Consensus 373 ~~~~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~ 452 (863)
+..-+..+..|- ..++|+++|.|..|+. +-||-.|+-.. ..+.|-...++. .=+
T Consensus 36 ~~~g~I~lN~gr-~~~~l~V~NtGDRPIQ----VGSHyHF~EvN----~aL~FDR~~A~G-----------------~RL 89 (158)
T PRK13198 36 LAETPITFNENK-PVTKVKVRNTGDRPIQ----VGSHFHFFEVN----RALEFDRAAAYG-----------------KRL 89 (158)
T ss_pred eCCCCeEeCCCC-cEEEEEEEeCCCCceE----eccccchhhcC----ccccccHhhhcC-----------------ccc
Confidence 333455566664 5689999999998863 34666665222 112221111110 112
Q ss_pred ecCC--CcccCCCCeEEEEEEEE
Q 002942 453 SFPE--GISIQGETPLLWPLWYR 473 (863)
Q Consensus 453 ~~P~--~~~L~pGes~~lPlwlr 473 (863)
++|. ....+||+++++.|.=-
T Consensus 90 dIPAGTAVRFEPG~~k~V~LV~~ 112 (158)
T PRK13198 90 NISSTTAIRFEPGDETEVPLIPF 112 (158)
T ss_pred ccCCCCeEeeCCCCeeEEEEEEc
Confidence 3442 35789999999998643
No 188
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=22.54 E-value=1.9e+02 Score=27.88 Aligned_cols=61 Identities=11% Similarity=0.099 Sum_probs=46.9
Q ss_pred HhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHH
Q 002942 70 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHM 133 (863)
Q Consensus 70 AfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~ 133 (863)
.+-....|..+-..|+...|..-|..++.-..+.. +.+-..+.|++....+|+++.|+..+
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~---l~~~a~l~LA~~~~~~~~~d~Al~~L 108 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE---LKPLARLRLARILLQQGQYDEALATL 108 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH---HHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34444445555577999999999999998654443 34556889999999999999999988
No 189
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=22.53 E-value=1.9e+02 Score=26.85 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=19.4
Q ss_pred EeccccceEEeCCCceeEEEeEEEEec
Q 002942 790 WSGSSASSVRLQPMSTTDIAMKVCLFS 816 (863)
Q Consensus 790 W~g~~~~~~~l~p~~~~~~~L~~~~~~ 816 (863)
+......+++|.||++.+|.+.+-..+
T Consensus 56 ~~~~~~~~vTV~ag~s~~v~vti~~p~ 82 (112)
T PF06280_consen 56 TVSFSPDTVTVPAGQSKTVTVTITPPS 82 (112)
T ss_dssp EEE---EEEEE-TTEEEEEEEEEE--G
T ss_pred eEEeCCCeEEECCCCEEEEEEEEEehh
Confidence 888999999999999999999988755
No 190
>PRK13205 ureB urease subunit beta; Reviewed
Probab=22.27 E-value=2.1e+02 Score=28.73 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=39.8
Q ss_pred CccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCC
Q 002942 377 PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPE 456 (863)
Q Consensus 377 P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~ 456 (863)
+..+..|. ..++|+++|.|..||. +-||-.|+-.. ..+.|-...++. .=+++|.
T Consensus 12 ~IelN~GR-~~i~L~V~NtGDRPIQ----VGSHyHF~EvN----~AL~FDR~~A~G-----------------~RLdIPA 65 (162)
T PRK13205 12 SLTGNVGR-EAKTIEIINTGDRPVQ----IGSHFHFAEVN----PSISFDRSEGYG-----------------FRLDIPS 65 (162)
T ss_pred CeEeCCCC-cEEEEEEEeCCCCceE----eccccchhhcC----ccccccHHHhcC-----------------cccccCC
Confidence 34455553 4589999999998874 34676665222 112221111111 1123442
Q ss_pred --CcccCCCCeEEEEEEE
Q 002942 457 --GISIQGETPLLWPLWY 472 (863)
Q Consensus 457 --~~~L~pGes~~lPlwl 472 (863)
....+||+++++.|-=
T Consensus 66 GTAVRFEPGe~ktV~LV~ 83 (162)
T PRK13205 66 GTAVRLEPGDARTVNLVA 83 (162)
T ss_pred CCeEeECCCCeEEEEEEE
Confidence 3578999999999863
No 191
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=22.06 E-value=6.5e+02 Score=23.49 Aligned_cols=61 Identities=10% Similarity=0.025 Sum_probs=33.2
Q ss_pred eeecCCCcccCCCCeEEEEEEEEec-CCceeEE-EEEEEEeeCCC-----CCcceEEEEEEEEEEEEec
Q 002942 451 VFSFPEGISIQGETPLLWPLWYRAA-VPGKISL-SITIYYEMGDV-----SSVIKYRLLRMHYNLEVLP 512 (863)
Q Consensus 451 v~~~P~~~~L~pGes~~lPlwlra~-~~G~~~l-~lLfyYe~~~~-----~~~~~~R~~R~~~~i~V~p 512 (863)
++..|.-..|+||++..+-||..+. ......+ ++.|.-=+... ...+.. .+|+..-+.+.|
T Consensus 51 ~~vsPp~~~L~pg~~q~vRv~~~~~~~~~~E~~yrl~~~~iP~~~~~~~~~~~v~i-~~~~~i~v~~rP 118 (122)
T PF00345_consen 51 FIVSPPIFRLEPGESQTVRVYRGSKLPIDRESLYRLSFREIPPSEAENESKNGVQI-ALRYSIPVFYRP 118 (122)
T ss_dssp EEEESSEEEEETTEEEEEEEEECSGS-SSS-EEEEEEEEEEESCCTTSSSSSEEEE-EEEEEEEEEEEE
T ss_pred EEEeCCceEeCCCCcEEEEEEecCCCCCCceEEEEEEEEEEecccccccccceEEE-EEEEEEEEEECc
Confidence 3345667789999999999966333 2333444 44454333322 222333 445555555554
No 192
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=21.96 E-value=77 Score=38.60 Aligned_cols=73 Identities=19% Similarity=0.443 Sum_probs=47.9
Q ss_pred HHHHHhhhhccCCCcch-hhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcC--CCccchhhhHHHHHHHHHHHhCCHH
Q 002942 51 LEQASYCYLLSKPPMLH-KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG--STWSHIKDHVHFHIGQWYAVLGMHD 127 (863)
Q Consensus 51 LEQAA~c~L~~~ppm~R-KyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~--~~W~~~edHI~~tLGrq~~~Lg~~~ 127 (863)
-++|=-||.++- ++= .||.-+-|-||=|..-.-..-|+.||+.|+.+=-. +-| |-||-.|...++++
T Consensus 437 h~~Aik~f~RAi--Qldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAw--------YGlG~vy~Kqek~e 506 (638)
T KOG1126|consen 437 HDTAIKCFKRAI--QLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAW--------YGLGTVYLKQEKLE 506 (638)
T ss_pred HHHHHHHHHHhh--ccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHH--------Hhhhhheeccchhh
Confidence 466777776542 333 37888889999999888899999999999865211 223 45555555555555
Q ss_pred HHHHHH
Q 002942 128 IAVAHM 133 (863)
Q Consensus 128 ~Av~h~ 133 (863)
.|.-||
T Consensus 507 ~Ae~~f 512 (638)
T KOG1126|consen 507 FAEFHF 512 (638)
T ss_pred HHHHHH
Confidence 554444
No 193
>PF06069 PerC: PerC transcriptional activator; InterPro: IPR024684 This family includes PerC, which is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria []. It also includes a number of uncharacterised proteins, such as Orf40 from bacteriophage SfV.
Probab=21.82 E-value=2.7e+02 Score=25.64 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=40.8
Q ss_pred HHHHHHhccchHHHHHHHHhHh--CcchhhHHHHHHHHHhhhhccCCCcchhhHhHHH
Q 002942 19 WVEMLKARHQYKDAATVYFRIC--GEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLV 74 (863)
Q Consensus 19 ~~E~lk~~~~~~eAa~~Lir~t--sed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmV 74 (863)
-||-|-++|+|+.||..-.-+- +.+.---..+..+-.+|.-.++.|-+++.-|+-|
T Consensus 6 ~Ae~LE~kGl~RRAA~rW~evm~~~~~~~eRe~~~~RR~~Cl~kakR~p~~~~~f~~l 63 (90)
T PF06069_consen 6 KAEELEAKGLWRRAATRWLEVMDLAETDKEREWIAQRREYCLRKAKRPPEPPDNFGDL 63 (90)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccCCCChhHHHHH
Confidence 3788999999999999766533 2333334556678888998887777777777765
No 194
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=21.20 E-value=80 Score=24.15 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=23.3
Q ss_pred hccchhcCCCcHHHHHHHHHHHhhhcC
Q 002942 76 SGDRYKKCDQINHAIRTYRSAVSVYKG 102 (863)
Q Consensus 76 AGhRyskagqr~hAlRCY~~A~~vY~~ 102 (863)
-|.-|...|+...|.++|+++++..=+
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 367788999999999999999987644
No 195
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=21.17 E-value=1.1e+03 Score=25.57 Aligned_cols=37 Identities=11% Similarity=0.042 Sum_probs=28.4
Q ss_pred ceeecCCCcccCCCCeEEEEEEEEecCCceeEEEEEE
Q 002942 450 AVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITI 486 (863)
Q Consensus 450 ~v~~~P~~~~L~pGes~~lPlwlra~~~G~~~l~lLf 486 (863)
.++..|....|.||++..+-|.-+|+...+...|+.|
T Consensus 76 eLiaSP~~l~L~pg~~q~IRli~lg~~~kE~~YRl~~ 112 (234)
T PRK15308 76 GLVVSPEKFALPAGTTRTVRVISLQAPEREEAWRVYF 112 (234)
T ss_pred cEEEcCceeEECCCCeEEEEEEEcCCCCcEEEEEEEE
Confidence 4666787889999999999999888743344456766
No 196
>PF04425 Bul1_N: Bul1 N terminus; InterPro: IPR007519 This domain is the N terminus of Saccharomyces cerevisiae (Baker's yeast) Bul1. Bul1 binds the ubiquitin ligase Rsp5, via an N-terminal PPSY motif (157-160 in P48524 from SWISSPROT) []. The complex containing Bul1 and Rsp5 is involved in intracellular trafficking of the general amino acid permease Gap1 [], degradation of Rog1 in cooperation with Bul2 and GSK-3 [], and mitochondrial inheritance []. Bul1 may contain HEAT repeats. The C terminus is IPR007520 from INTERPRO.
Probab=20.98 E-value=5e+02 Score=30.66 Aligned_cols=119 Identities=13% Similarity=0.175 Sum_probs=68.6
Q ss_pred CCceEEEEecCCCeEEEE--EecCCccccCccEEEEEEEEEecCcccccc--EEEEecCCceEEeccCCCCCccchhhh-
Q 002942 355 SNDLKFIVIKSLPKLEGL--IHPLPERAYAGDLRHLVLELKNQSDFSVKN--LKMKVSHPRFLSIGNRDDMTKEFPACL- 429 (863)
Q Consensus 355 d~~L~~~V~~~~P~L~v~--~~~~P~~ll~GEi~~~~l~L~N~g~~pl~~--l~v~~s~p~~~~~g~~~~~~~~~p~~l- 429 (863)
...+++.|++..|...+. ++..--+.=.|.+....|+++|.|..||.+ ++|.+- ..+++.+........|.-.
T Consensus 133 ~l~I~I~~Tk~v~~~g~p~~id~~l~Ey~qGD~I~GyvtI~N~S~~pIpFdMFyV~lE--G~~~v~~~~~~~~~~~~~~k 210 (438)
T PF04425_consen 133 PLEIEIYVTKDVGKPGKPPEIDPSLKEYTQGDIIHGYVTIENTSSKPIPFDMFYVSLE--GTISVVDSKSPSSKKPRTVK 210 (438)
T ss_pred ceEEEEEEeccCCCCCCCcccCcccccccCCCEEEEEEEEEECCCCCcccceEEEEEE--EEEEEcccccccccccHHHH
Confidence 355777788888877652 112223677899999999999999999854 444443 3455554411111111100
Q ss_pred --hcccccccccc-------------CCCCCCCCcceeecCCCcccCCCCeEEEEEEEEec
Q 002942 430 --QKMTNAEQSVA-------------GGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAA 475 (863)
Q Consensus 430 --~~~~~~e~~~~-------------~~~~~~~~~~v~~~P~~~~L~pGes~~lPlwlra~ 475 (863)
.+..+.+.++. .+...-..+..+.+|....|+||.+-.-+++++=|
T Consensus 211 kFL~M~D~sASws~~~i~~~~~~~~~~~~~Dp~Dgt~lgl~~~r~l~p~~~Yk~fF~FkiP 271 (438)
T PF04425_consen 211 KFLRMFDFSASWSYANIDRLVGDNYCPGEVDPYDGTYLGLPNKRILEPGVKYKKFFTFKIP 271 (438)
T ss_pred HHHHhhcceecccccccccccccccCCccccCCCCeeEeCCCCceecCCCeEeceeEEeCC
Confidence 00111111110 00111122346678888999999999999999987
No 197
>PRK13201 ureB urease subunit beta; Reviewed
Probab=20.57 E-value=2.5e+02 Score=27.61 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=40.2
Q ss_pred CccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCC
Q 002942 377 PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPE 456 (863)
Q Consensus 377 P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~ 456 (863)
|..+..| ...++|+++|.|..|+. +-||-.|+-... .+.|-...++ +.=+++|.
T Consensus 12 ~I~lN~g-r~~~~l~V~NtGDRPIQ----VGSHyHF~EvN~----aL~FDR~~A~-----------------G~RLdIPA 65 (136)
T PRK13201 12 EVEINNH-HPETVIEVENTGDRPIQ----VGSHFHFYEANA----ALDFEREMAY-----------------GKHLDIPA 65 (136)
T ss_pred CeEeCCC-CCEEEEEEEeCCCcceE----eccccchhhcCc----cccccHhhhc-----------------CcccccCC
Confidence 3444454 45589999999998874 346766652221 1122111111 11123442
Q ss_pred --CcccCCCCeEEEEEEEE
Q 002942 457 --GISIQGETPLLWPLWYR 473 (863)
Q Consensus 457 --~~~L~pGes~~lPlwlr 473 (863)
....+||+++++.|.=-
T Consensus 66 GTAVRFEPG~~k~V~LV~i 84 (136)
T PRK13201 66 GAAVRFEPGDKKEVQLVEY 84 (136)
T ss_pred CCeEeECCCCeEEEEEEEc
Confidence 35789999999998643
No 198
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=20.48 E-value=1.5e+02 Score=32.32 Aligned_cols=60 Identities=22% Similarity=0.457 Sum_probs=41.9
Q ss_pred ccchhcCCCcHHHHHHHHHHHhh------hc---------CCCccchhhh-------------HHHHHHHHHHHhCCHHH
Q 002942 77 GDRYKKCDQINHAIRTYRSAVSV------YK---------GSTWSHIKDH-------------VHFHIGQWYAVLGMHDI 128 (863)
Q Consensus 77 GhRyskagqr~hAlRCY~~A~~v------Y~---------~~~W~~~edH-------------I~~tLGrq~~~Lg~~~~ 128 (863)
|++|-+.....-|+.||.+|+.+ |. -+.|...+.- =||-||.+......+++
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 44555555556788898888753 22 2566665432 37888999888899999
Q ss_pred HHHHHHHh
Q 002942 129 AVAHMLEK 136 (863)
Q Consensus 129 Av~h~l~~ 136 (863)
||++|-+.
T Consensus 97 aI~~Lqra 104 (284)
T KOG4642|consen 97 AIKVLQRA 104 (284)
T ss_pred HHHHHHHH
Confidence 99998773
No 199
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=20.06 E-value=2.4e+02 Score=23.30 Aligned_cols=58 Identities=14% Similarity=0.167 Sum_probs=36.9
Q ss_pred HHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhh
Q 002942 21 EMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVY 100 (863)
Q Consensus 21 E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY 100 (863)
+++-..+.|.+|...+-|+-..++- +..++..- |.-|.+.|....|+++|.+++..-
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~----------------------a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQR----------------------ARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHH----------------------HHHHHHhccHHHHHHHHHHHHHHC
Confidence 4566777888887766666554441 22222233 333446778899999999999654
Q ss_pred c
Q 002942 101 K 101 (863)
Q Consensus 101 ~ 101 (863)
.
T Consensus 60 p 60 (73)
T PF13371_consen 60 P 60 (73)
T ss_pred C
Confidence 3
Done!