Query 002942
Match_columns 863
No_of_seqs 163 out of 201
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 07:24:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002942.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002942hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ifu_A Gamma-SNAP; membrane fu 96.7 0.012 4E-07 62.5 13.3 126 9-135 32-180 (307)
2 1qqe_A Vesicular transport pro 96.1 0.025 8.6E-07 59.5 11.3 127 9-135 33-183 (292)
3 2qsv_A Uncharacterized protein 96.1 0.35 1.2E-05 49.5 19.3 175 211-489 11-205 (220)
4 3ro3_A PINS homolog, G-protein 95.2 0.18 6.2E-06 45.5 11.9 126 10-135 6-154 (164)
5 1qqe_A Vesicular transport pro 94.9 0.066 2.3E-06 56.2 9.2 106 28-135 32-143 (292)
6 2ifu_A Gamma-SNAP; membrane fu 94.9 0.058 2E-06 57.1 8.5 107 26-135 29-140 (307)
7 3gyz_A Chaperone protein IPGC; 94.6 0.2 6.9E-06 47.9 10.9 91 16-135 39-129 (151)
8 2q3z_A Transglutaminase 2; tra 94.0 4 0.00014 48.5 22.0 173 215-486 483-668 (687)
9 2vgx_A Chaperone SYCD; alterna 94.0 0.35 1.2E-05 45.5 10.9 92 15-135 23-114 (148)
10 1vjj_A Protein-glutamine gluta 93.7 4.7 0.00016 47.9 21.8 172 215-486 492-674 (692)
11 2lni_A Stress-induced-phosphop 93.6 0.68 2.3E-05 40.6 11.7 95 12-135 15-109 (133)
12 2xcb_A PCRH, regulatory protei 93.6 0.45 1.6E-05 43.7 10.9 92 15-135 20-111 (142)
13 3vtx_A MAMA; tetratricopeptide 93.6 0.31 1.1E-05 46.3 10.0 54 76-135 113-166 (184)
14 3sz7_A HSC70 cochaperone (SGT) 93.5 0.47 1.6E-05 44.5 11.0 93 14-135 12-104 (164)
15 3vtx_A MAMA; tetratricopeptide 93.4 0.27 9.1E-06 46.8 9.2 111 18-135 10-132 (184)
16 2xzz_A Protein-glutamine gamma 93.4 0.082 2.8E-06 48.0 5.0 67 214-317 15-81 (102)
17 3ulq_A Response regulator aspa 93.3 0.38 1.3E-05 51.8 11.3 120 16-135 106-249 (383)
18 3upv_A Heat shock protein STI1 93.2 0.67 2.3E-05 41.2 11.0 90 17-135 8-97 (126)
19 3q49_B STIP1 homology and U bo 93.1 0.46 1.6E-05 42.5 9.9 93 14-135 10-102 (137)
20 2xev_A YBGF; tetratricopeptide 93.1 0.75 2.6E-05 40.6 11.2 94 17-135 6-101 (129)
21 1g0d_A Protein-glutamine gamma 93.0 0.37 1.3E-05 57.1 11.1 86 214-337 594-682 (695)
22 3sf4_A G-protein-signaling mod 93.0 0.26 9E-06 52.4 9.4 105 12-135 8-112 (406)
23 3nf1_A KLC 1, kinesin light ch 93.0 0.73 2.5E-05 46.8 12.3 124 12-135 26-178 (311)
24 1na0_A Designed protein CTPR3; 93.0 0.84 2.9E-05 39.2 11.1 96 11-135 7-102 (125)
25 3nf1_A KLC 1, kinesin light ch 93.0 0.89 3E-05 46.2 12.9 125 11-135 67-220 (311)
26 2vyi_A SGTA protein; chaperone 92.9 1.1 3.9E-05 38.7 11.8 94 13-135 12-105 (131)
27 1elr_A TPR2A-domain of HOP; HO 92.5 0.77 2.6E-05 39.9 10.2 98 15-135 6-104 (131)
28 3idu_A Uncharacterized protein 92.4 0.49 1.7E-05 44.6 9.1 91 360-490 10-100 (127)
29 2dba_A Smooth muscle cell asso 92.3 1.5 5.1E-05 39.2 12.2 94 14-135 29-124 (148)
30 1hh8_A P67PHOX, NCF-2, neutrop 92.3 0.83 2.9E-05 44.2 11.1 115 17-135 10-146 (213)
31 4a1s_A PINS, partner of inscut 92.2 0.5 1.7E-05 50.8 10.3 101 16-135 51-151 (411)
32 3q15_A PSP28, response regulat 92.2 0.83 2.9E-05 49.2 12.0 125 11-135 99-247 (378)
33 3ro2_A PINS homolog, G-protein 92.2 0.41 1.4E-05 48.8 9.1 102 15-135 7-108 (338)
34 3gw4_A Uncharacterized protein 91.9 0.91 3.1E-05 43.2 10.8 106 13-135 26-132 (203)
35 3sf4_A G-protein-signaling mod 91.9 0.93 3.2E-05 48.0 11.8 123 13-135 187-332 (406)
36 3edt_B KLC 2, kinesin light ch 91.7 0.91 3.1E-05 45.1 10.9 124 12-135 42-194 (283)
37 2kck_A TPR repeat; tetratricop 91.7 0.55 1.9E-05 39.7 8.0 91 18-135 11-102 (112)
38 1ex0_A Coagulation factor XIII 91.6 4.8 0.00016 48.1 18.2 175 215-487 527-710 (731)
39 3as5_A MAMA; tetratricopeptide 91.6 1.2 4.1E-05 41.0 10.9 56 74-135 114-169 (186)
40 1hxi_A PEX5, peroxisome target 91.5 0.68 2.3E-05 41.8 8.8 90 17-135 21-110 (121)
41 2fo7_A Synthetic consensus TPR 91.5 1.3 4.5E-05 38.1 10.5 109 17-135 5-128 (136)
42 3ro2_A PINS homolog, G-protein 91.2 0.55 1.9E-05 47.8 8.8 125 11-135 181-328 (338)
43 2pl2_A Hypothetical conserved 91.1 1.3 4.4E-05 43.9 11.3 56 73-135 121-176 (217)
44 1g0d_A Protein-glutamine gamma 91.1 8.7 0.0003 45.6 19.5 173 217-487 484-666 (695)
45 4gcn_A Protein STI-1; structur 91.1 1.8 6.1E-05 39.2 11.3 93 20-135 15-108 (127)
46 1elw_A TPR1-domain of HOP; HOP 91.0 1.6 5.5E-05 36.9 10.4 93 14-135 5-97 (118)
47 4a1s_A PINS, partner of inscut 90.9 0.57 1.9E-05 50.3 9.0 66 70-135 223-288 (411)
48 2ho1_A Type 4 fimbrial biogene 90.9 1.6 5.4E-05 43.2 11.6 54 76-135 147-200 (252)
49 4gco_A Protein STI-1; structur 90.8 0.91 3.1E-05 41.3 9.0 87 20-135 20-106 (126)
50 3qky_A Outer membrane assembly 90.7 1.6 5.4E-05 44.1 11.6 59 74-135 152-220 (261)
51 3gw4_A Uncharacterized protein 90.6 1.8 6.2E-05 41.1 11.4 68 68-135 105-172 (203)
52 3ulq_A Response regulator aspa 90.5 0.83 2.8E-05 49.1 9.8 105 14-135 185-289 (383)
53 3hym_B Cell division cycle pro 90.4 1.5 5E-05 44.9 11.3 65 71-135 194-261 (330)
54 2vq2_A PILW, putative fimbrial 90.0 2.1 7.1E-05 41.0 11.3 117 14-135 9-138 (225)
55 3k9i_A BH0479 protein; putativ 89.9 0.78 2.7E-05 40.6 7.5 55 75-135 32-86 (117)
56 3cv0_A Peroxisome targeting si 89.9 1.4 4.7E-05 45.1 10.5 119 14-133 173-309 (327)
57 2ho1_A Type 4 fimbrial biogene 89.9 1.3 4.6E-05 43.7 10.1 119 12-135 36-166 (252)
58 3hym_B Cell division cycle pro 89.8 1.5 5E-05 44.9 10.6 113 16-135 162-295 (330)
59 1a17_A Serine/threonine protei 89.8 3 0.0001 38.0 11.8 94 13-135 13-106 (166)
60 2pl2_A Hypothetical conserved 89.7 1.2 4E-05 44.2 9.5 111 15-135 7-143 (217)
61 3as5_A MAMA; tetratricopeptide 89.6 2 6.8E-05 39.5 10.5 116 13-135 8-135 (186)
62 1row_A SSP-19, MSP-domain prot 89.5 1.2 4.2E-05 40.7 8.5 64 387-491 18-81 (109)
63 2q7f_A YRRB protein; TPR, prot 89.5 1.4 4.9E-05 43.0 9.9 53 75-133 130-182 (243)
64 2yhc_A BAMD, UPF0169 lipoprote 89.4 1.2 4.2E-05 44.2 9.4 119 13-135 41-172 (225)
65 1ex0_A Coagulation factor XIII 89.1 1.1 3.7E-05 53.5 9.8 87 214-337 639-726 (731)
66 2q3z_A Transglutaminase 2; tra 89.1 0.49 1.7E-05 56.2 6.9 86 214-336 596-684 (687)
67 1m1s_A WR4; structural genomic 89.0 1.2 4E-05 41.4 8.0 64 387-491 26-89 (116)
68 2vq2_A PILW, putative fimbrial 88.9 3.7 0.00013 39.2 12.2 114 15-135 44-172 (225)
69 3ro3_A PINS homolog, G-protein 88.9 0.52 1.8E-05 42.3 5.7 63 73-135 12-74 (164)
70 4eqf_A PEX5-related protein; a 88.8 1.6 5.4E-05 46.1 10.2 55 77-135 184-238 (365)
71 4ga2_A E3 SUMO-protein ligase 88.6 0.8 2.7E-05 42.9 6.9 56 74-135 69-124 (150)
72 3ieg_A DNAJ homolog subfamily 88.4 2 6.8E-05 44.3 10.5 57 77-135 241-297 (359)
73 1xnf_A Lipoprotein NLPI; TPR, 88.3 2.2 7.6E-05 42.4 10.5 55 75-135 82-136 (275)
74 3edt_B KLC 2, kinesin light ch 88.2 1.8 6.1E-05 42.9 9.7 68 68-135 83-152 (283)
75 2q7f_A YRRB protein; TPR, prot 88.1 2.2 7.5E-05 41.6 10.1 117 12-135 22-150 (243)
76 3uq3_A Heat shock protein STI1 88.1 2.5 8.4E-05 41.5 10.5 114 13-135 79-198 (258)
77 3rkv_A Putative peptidylprolyl 88.0 3.1 0.00011 38.6 10.7 53 77-135 70-122 (162)
78 3u4t_A TPR repeat-containing p 87.9 2.2 7.4E-05 42.6 10.1 113 17-135 7-133 (272)
79 4gyw_A UDP-N-acetylglucosamine 87.9 1.6 5.5E-05 52.6 10.5 111 15-135 11-136 (723)
80 4ga2_A E3 SUMO-protein ligase 87.8 0.69 2.4E-05 43.3 5.9 54 76-135 37-90 (150)
81 3qky_A Outer membrane assembly 87.8 4 0.00014 41.1 12.1 121 15-135 17-173 (261)
82 1p5q_A FKBP52, FK506-binding p 87.6 2.2 7.5E-05 45.7 10.5 105 16-135 150-255 (336)
83 3qou_A Protein YBBN; thioredox 87.6 2.3 7.9E-05 44.3 10.4 114 15-135 119-244 (287)
84 2l6j_A TPR repeat-containing p 87.2 0.45 1.5E-05 40.7 3.9 95 15-132 6-100 (111)
85 2r5s_A Uncharacterized protein 87.1 2.6 8.9E-05 39.9 9.7 115 14-135 41-169 (176)
86 3uq3_A Heat shock protein STI1 87.1 3.5 0.00012 40.3 10.9 57 73-135 176-232 (258)
87 2qfc_A PLCR protein; TPR, HTH, 87.1 3.5 0.00012 42.6 11.4 63 73-135 158-221 (293)
88 1ihg_A Cyclophilin 40; ppiase 87.1 2.4 8.2E-05 46.4 10.6 106 16-135 226-332 (370)
89 3cv0_A Peroxisome targeting si 87.0 2.1 7.2E-05 43.7 9.6 51 79-135 147-197 (327)
90 3ma5_A Tetratricopeptide repea 87.0 1.2 4.1E-05 38.5 6.6 57 73-135 10-66 (100)
91 1hz4_A MALT regulatory protein 86.9 5.3 0.00018 42.3 13.0 124 11-135 51-199 (373)
92 4i17_A Hypothetical protein; T 86.9 2.4 8.2E-05 41.6 9.6 120 15-135 9-142 (228)
93 2e2e_A Formate-dependent nitri 86.8 3.6 0.00012 38.6 10.5 93 15-135 46-140 (177)
94 1kt0_A FKBP51, 51 kDa FK506-bi 86.8 2.4 8.2E-05 47.6 10.6 104 17-135 272-376 (457)
95 4gcn_A Protein STI-1; structur 86.7 1 3.5E-05 40.9 6.2 54 76-135 14-67 (127)
96 1fch_A Peroxisomal targeting s 86.6 3 0.0001 43.6 10.7 119 16-135 67-242 (368)
97 2v5f_A Prolyl 4-hydroxylase su 86.4 1.2 4.2E-05 39.2 6.4 60 76-135 11-71 (104)
98 2l6j_A TPR repeat-containing p 86.3 1.5 5.1E-05 37.3 6.8 56 74-135 8-63 (111)
99 3q15_A PSP28, response regulat 86.3 1.5 5.1E-05 47.2 8.3 59 76-135 228-286 (378)
100 2fbn_A 70 kDa peptidylprolyl i 86.2 5.2 0.00018 38.4 11.5 105 14-135 39-147 (198)
101 3urz_A Uncharacterized protein 86.1 4.1 0.00014 39.9 10.8 106 16-135 7-113 (208)
102 1vjj_A Protein-glutamine gluta 85.9 1.2 4.3E-05 52.7 7.8 87 214-336 603-690 (692)
103 2yhc_A BAMD, UPF0169 lipoprote 85.7 6.8 0.00023 38.7 12.2 100 25-135 108-209 (225)
104 2y4t_A DNAJ homolog subfamily 85.6 5.1 0.00018 43.2 12.3 57 73-135 180-236 (450)
105 1na3_A Designed protein CTPR2; 85.5 2.2 7.4E-05 34.9 7.2 56 74-135 13-68 (91)
106 4f3v_A ESX-1 secretion system 85.4 4.2 0.00014 43.3 11.0 115 13-135 102-233 (282)
107 4gco_A Protein STI-1; structur 85.2 0.96 3.3E-05 41.1 5.2 61 69-135 12-72 (126)
108 3qou_A Protein YBBN; thioredox 85.2 2.9 0.0001 43.5 9.6 114 14-135 152-280 (287)
109 2c2l_A CHIP, carboxy terminus 85.0 2.8 9.5E-05 43.6 9.3 90 17-135 8-97 (281)
110 1w3b_A UDP-N-acetylglucosamine 85.0 4.6 0.00016 42.9 11.3 56 74-135 207-262 (388)
111 3ieg_A DNAJ homolog subfamily 84.9 4.4 0.00015 41.6 10.8 53 77-135 127-179 (359)
112 3u3w_A Transcriptional activat 84.5 3.7 0.00013 42.4 10.1 69 66-135 111-180 (293)
113 2y4t_A DNAJ homolog subfamily 84.5 6.2 0.00021 42.5 12.2 60 70-135 295-354 (450)
114 2e6j_A Hydin protein; PAPD, st 84.4 1.3 4.3E-05 39.9 5.5 76 379-490 21-96 (112)
115 2ys4_A Hydrocephalus-inducing 84.3 1.5 5.3E-05 40.3 6.2 71 379-491 36-107 (122)
116 2kc7_A BFR218_protein; tetratr 84.0 1.1 3.8E-05 37.8 4.8 57 74-135 4-60 (99)
117 3upv_A Heat shock protein STI1 83.9 1.8 6.3E-05 38.2 6.4 59 71-135 5-63 (126)
118 4eqf_A PEX5-related protein; a 83.6 4.4 0.00015 42.6 10.3 59 71-135 248-306 (365)
119 3sz7_A HSC70 cochaperone (SGT) 83.3 2.2 7.6E-05 39.8 7.0 62 68-135 9-70 (164)
120 1hz4_A MALT regulatory protein 83.2 4.7 0.00016 42.7 10.4 124 11-135 12-160 (373)
121 2vsy_A XCC0866; transferase, g 82.9 5.9 0.0002 45.2 11.8 112 15-135 25-153 (568)
122 2r5s_A Uncharacterized protein 82.8 2.3 8E-05 40.3 7.0 110 17-135 10-133 (176)
123 1a17_A Serine/threonine protei 82.8 5.1 0.00017 36.3 9.2 94 15-135 49-142 (166)
124 3n71_A Histone lysine methyltr 82.8 5.8 0.0002 45.4 11.5 103 15-135 311-418 (490)
125 1fch_A Peroxisomal targeting s 82.7 6.3 0.00022 41.1 11.0 60 70-135 217-276 (368)
126 2qfc_A PLCR protein; TPR, HTH, 82.6 8.8 0.0003 39.5 12.0 60 74-133 200-260 (293)
127 2fbn_A 70 kDa peptidylprolyl i 82.3 2.8 9.6E-05 40.4 7.5 70 66-135 34-113 (198)
128 2kck_A TPR repeat; tetratricop 82.1 2 6.8E-05 36.1 5.6 56 74-135 10-65 (112)
129 2if4_A ATFKBP42; FKBP-like, al 81.7 4.4 0.00015 43.4 9.5 102 18-135 184-289 (338)
130 1wic_A Hypothetical protein ri 81.4 1.5 5.1E-05 42.4 5.0 68 383-489 34-101 (152)
131 2xev_A YBGF; tetratricopeptide 80.6 3.2 0.00011 36.3 6.7 57 76-135 8-64 (129)
132 2gw1_A Mitochondrial precursor 80.5 3.7 0.00013 45.0 8.6 61 75-135 377-440 (514)
133 3u3w_A Transcriptional activat 80.5 13 0.00043 38.3 12.3 68 68-135 194-262 (293)
134 2gw1_A Mitochondrial precursor 80.4 6.7 0.00023 42.9 10.6 113 13-133 237-361 (514)
135 2xpi_A Anaphase-promoting comp 80.3 5.4 0.00019 45.0 10.1 63 73-135 478-541 (597)
136 2l0d_A Cell surface protein; s 80.2 13 0.00045 34.1 10.7 85 366-489 2-87 (114)
137 4abn_A Tetratricopeptide repea 80.2 3.8 0.00013 46.1 8.7 49 84-135 235-283 (474)
138 3u4t_A TPR repeat-containing p 80.1 3.5 0.00012 41.1 7.5 59 77-135 183-246 (272)
139 3q49_B STIP1 homology and U bo 79.9 3.9 0.00013 36.2 7.0 60 70-135 9-68 (137)
140 1hh8_A P67PHOX, NCF-2, neutrop 79.6 5.3 0.00018 38.3 8.4 60 70-135 37-96 (213)
141 2qsv_A Uncharacterized protein 79.4 55 0.0019 32.9 20.0 158 379-589 14-186 (220)
142 2hr2_A Hypothetical protein; a 78.8 2.4 8.1E-05 41.4 5.5 64 72-135 13-82 (159)
143 2lni_A Stress-induced-phosphop 78.5 4.4 0.00015 35.2 6.8 65 65-135 11-75 (133)
144 2xpi_A Anaphase-promoting comp 78.4 6.7 0.00023 44.2 10.1 111 19-135 447-575 (597)
145 4i17_A Hypothetical protein; T 78.4 7.7 0.00026 37.8 9.4 107 15-126 44-169 (228)
146 3idu_A Uncharacterized protein 78.3 11 0.00036 35.4 9.6 68 214-320 28-95 (127)
147 3qwp_A SET and MYND domain-con 78.3 9.1 0.00031 42.9 11.0 106 15-135 289-396 (429)
148 3rkv_A Putative peptidylprolyl 78.2 2 6.7E-05 40.1 4.6 68 68-135 9-88 (162)
149 3fp2_A TPR repeat-containing p 77.9 13 0.00044 41.0 12.0 112 16-135 246-369 (537)
150 1z9l_A Vesicle-associated memb 77.8 6.3 0.00022 36.6 8.0 69 383-490 26-97 (128)
151 4gyw_A UDP-N-acetylglucosamine 77.6 5.5 0.00019 47.9 9.4 110 16-135 46-170 (723)
152 2hr2_A Hypothetical protein; a 77.4 11 0.00037 36.6 9.8 106 17-135 15-127 (159)
153 2kat_A Uncharacterized protein 77.0 4.8 0.00016 34.9 6.6 56 74-135 23-78 (115)
154 1elw_A TPR1-domain of HOP; HOP 76.1 6.3 0.00022 33.1 7.0 57 73-135 7-63 (118)
155 2vyi_A SGTA protein; chaperone 75.9 6.6 0.00023 33.6 7.2 62 68-135 10-71 (131)
156 1na0_A Designed protein CTPR3; 75.8 6.5 0.00022 33.3 7.0 59 71-135 10-68 (125)
157 3fp2_A TPR repeat-containing p 75.7 6.6 0.00023 43.4 8.9 115 14-135 277-403 (537)
158 3isy_A Bsupi, intracellular pr 75.6 13 0.00044 34.5 9.2 77 217-320 16-100 (120)
159 1wao_1 Serine/threonine protei 75.2 3.4 0.00012 46.8 6.4 53 77-135 47-99 (477)
160 1w3b_A UDP-N-acetylglucosamine 75.2 8.7 0.0003 40.7 9.4 23 77-99 278-300 (388)
161 2ys4_A Hydrocephalus-inducing 75.0 6.8 0.00023 35.9 7.2 64 210-314 32-95 (122)
162 1elr_A TPR2A-domain of HOP; HO 74.7 7.3 0.00025 33.4 7.2 58 72-135 6-63 (131)
163 1msp_A MSP, major sperm protei 74.4 5.5 0.00019 37.1 6.5 68 385-491 26-96 (126)
164 3ffl_A Anaphase-promoting comp 74.2 5.4 0.00018 39.2 6.5 66 70-135 63-147 (167)
165 3qww_A SET and MYND domain-con 73.5 15 0.00053 41.2 11.1 63 73-135 343-407 (433)
166 2dba_A Smooth muscle cell asso 73.2 7 0.00024 34.6 6.8 66 67-135 25-90 (148)
167 1hxi_A PEX5, peroxisome target 72.8 4.3 0.00015 36.3 5.2 56 74-135 21-76 (121)
168 4abn_A Tetratricopeptide repea 72.6 6.5 0.00022 44.2 7.8 114 14-133 171-315 (474)
169 4f3v_A ESX-1 secretion system 72.6 5 0.00017 42.7 6.5 51 84-135 131-196 (282)
170 3gyz_A Chaperone protein IPGC; 71.4 4.4 0.00015 38.4 5.2 58 72-135 38-95 (151)
171 2ond_A Cleavage stimulation fa 71.4 25 0.00087 36.3 11.6 111 17-135 103-228 (308)
172 3mkr_A Coatomer subunit epsilo 70.9 23 0.00077 36.8 11.1 112 15-135 103-225 (291)
173 2e6j_A Hydin protein; PAPD, st 70.9 7.6 0.00026 34.6 6.4 80 210-326 17-96 (112)
174 2if4_A ATFKBP42; FKBP-like, al 70.2 3.6 0.00012 44.1 4.8 68 68-135 177-255 (338)
175 2h6f_A Protein farnesyltransfe 70.0 9.7 0.00033 41.8 8.3 112 15-135 99-225 (382)
176 1na3_A Designed protein CTPR2; 69.8 28 0.00097 27.8 9.4 83 13-124 9-91 (91)
177 3but_A Uncharacterized protein 69.4 13 0.00046 35.1 7.9 28 220-247 19-46 (136)
178 4g1t_A Interferon-induced prot 69.2 8 0.00027 42.1 7.4 60 73-135 337-397 (472)
179 1ouv_A Conserved hypothetical 68.9 26 0.0009 35.0 10.8 53 75-135 79-139 (273)
180 1ouv_A Conserved hypothetical 68.4 27 0.00092 34.9 10.7 109 16-135 41-175 (273)
181 1p5q_A FKBP52, FK506-binding p 67.6 8.7 0.0003 40.9 7.2 67 69-135 146-221 (336)
182 2pzi_A Probable serine/threoni 67.4 6.4 0.00022 46.6 6.6 110 15-135 435-559 (681)
183 2vsy_A XCC0866; transferase, g 67.0 8.2 0.00028 44.0 7.2 58 72-135 59-116 (568)
184 3mkr_A Coatomer subunit epsilo 66.4 21 0.00071 37.1 9.6 109 15-133 132-257 (291)
185 2xcb_A PCRH, regulatory protei 66.0 8.1 0.00028 35.1 5.6 55 75-135 23-77 (142)
186 4b4t_Q 26S proteasome regulato 65.9 22 0.00076 38.0 10.1 100 13-135 135-241 (434)
187 1ihg_A Cyclophilin 40; ppiase 65.8 5.1 0.00018 43.7 4.9 67 69-135 222-298 (370)
188 1kt0_A FKBP51, 51 kDa FK506-bi 65.4 10 0.00034 42.5 7.3 68 68-135 266-342 (457)
189 2vgx_A Chaperone SYCD; alterna 64.8 8.6 0.00029 35.6 5.6 54 76-135 27-80 (148)
190 2cri_A Vesicle-associated memb 64.1 7.1 0.00024 37.3 4.9 54 383-475 30-83 (147)
191 3qbt_B Inositol polyphosphate 63.3 8.9 0.00031 36.3 5.4 62 379-474 38-100 (140)
192 2xzz_A Protein-glutamine gamma 63.0 25 0.00086 31.5 8.1 82 366-487 5-86 (102)
193 4b4t_Q 26S proteasome regulato 62.7 63 0.0022 34.3 13.0 120 15-135 57-200 (434)
194 1xnf_A Lipoprotein NLPI; TPR, 61.9 14 0.00048 36.4 7.0 57 73-135 46-102 (275)
195 3hrz_B Cobra venom factor; ser 61.1 43 0.0015 34.7 10.7 73 214-318 91-163 (252)
196 1xi4_A Clathrin heavy chain; a 59.0 23 0.0008 45.7 9.5 47 75-135 1200-1246(1630)
197 3urz_A Uncharacterized protein 58.0 7.2 0.00025 38.1 4.0 63 73-135 7-79 (208)
198 2c2l_A CHIP, carboxy terminus 57.7 12 0.00041 38.6 5.8 58 72-135 6-63 (281)
199 3n71_A Histone lysine methyltr 57.7 36 0.0012 38.8 10.2 104 12-133 350-458 (490)
200 3rjv_A Putative SEL1 repeat pr 55.2 70 0.0024 31.0 10.8 115 14-135 19-154 (212)
201 3isy_A Bsupi, intracellular pr 54.9 26 0.00089 32.5 6.8 82 707-831 19-101 (120)
202 3ma5_A Tetratricopeptide repea 54.4 22 0.00076 30.1 6.1 67 14-103 8-74 (100)
203 2v6y_A AAA family ATPase, P60 54.0 6.8 0.00023 33.9 2.6 36 66-101 7-42 (83)
204 1xi4_A Clathrin heavy chain; a 53.3 26 0.00088 45.3 8.5 97 20-135 1056-1159(1630)
205 2fo7_A Synthetic consensus TPR 52.8 23 0.00079 29.9 6.0 51 78-134 9-59 (136)
206 4b4t_P 26S proteasome regulato 52.4 87 0.003 35.0 12.2 101 12-135 136-243 (445)
207 4g1t_A Interferon-induced prot 48.9 23 0.00077 38.5 6.5 59 77-135 58-119 (472)
208 2kat_A Uncharacterized protein 48.7 27 0.00091 29.9 5.8 68 14-104 20-87 (115)
209 1wao_1 Serine/threonine protei 48.4 21 0.00072 40.2 6.3 57 73-135 9-65 (477)
210 2w2u_A Hypothetical P60 katani 48.2 9.5 0.00033 33.0 2.6 38 64-101 13-50 (83)
211 3eab_A Spastin; spastin, MIT, 48.0 6.5 0.00022 34.6 1.5 36 66-101 12-50 (89)
212 2e2e_A Formate-dependent nitri 47.6 29 0.001 32.1 6.2 57 73-135 47-106 (177)
213 3qwp_A SET and MYND domain-con 41.6 57 0.0019 36.3 8.4 77 11-102 327-403 (429)
214 1yew_A Particulate methane mon 39.8 71 0.0024 34.9 8.2 77 381-475 261-337 (382)
215 2dl1_A Spartin; SPG20, MIT, st 39.3 13 0.00045 34.2 2.2 35 67-101 19-53 (116)
216 3qww_A SET and MYND domain-con 39.3 55 0.0019 36.6 7.7 75 13-102 340-414 (433)
217 2v6x_A Vacuolar protein sortin 38.7 22 0.00075 30.5 3.4 36 66-101 9-44 (85)
218 2xm6_A Protein corresponding t 38.2 1.4E+02 0.0048 32.8 11.0 45 83-135 380-428 (490)
219 3hrz_B Cobra venom factor; ser 37.2 1.3E+02 0.0046 30.9 9.8 81 375-487 87-167 (252)
220 4a5x_A MITD1, MIT domain-conta 36.4 20 0.00069 31.1 2.8 34 68-101 14-47 (86)
221 2ooe_A Cleavage stimulation fa 35.0 1.4E+02 0.0047 33.2 10.3 111 17-135 325-450 (530)
222 1zu2_A Mitochondrial import re 34.6 31 0.0011 33.3 4.1 44 86-135 62-116 (158)
223 2pzi_A Probable serine/threoni 34.6 88 0.003 36.7 8.9 59 71-135 434-492 (681)
224 2xm6_A Protein corresponding t 33.9 2.7E+02 0.0092 30.4 12.4 43 85-135 346-392 (490)
225 1wfd_A Hypothetical protein 15 33.8 23 0.00079 31.1 2.8 39 62-101 8-46 (93)
226 2kc7_A BFR218_protein; tetratr 33.0 65 0.0022 26.3 5.6 63 18-102 5-67 (99)
227 2r39_A FIXG-related protein; s 32.0 1.5E+02 0.0051 26.7 8.2 56 704-815 29-84 (118)
228 4fxk_B Complement C4-A alpha c 31.8 82 0.0028 37.7 8.1 75 213-321 162-236 (767)
229 3k9i_A BH0479 protein; putativ 31.6 92 0.0032 26.6 6.5 67 14-103 28-94 (117)
230 2l0d_A Cell surface protein; s 30.4 1.6E+02 0.0054 26.8 7.9 67 215-320 15-83 (114)
231 1yyc_A LEA protein, putative l 30.4 64 0.0022 31.7 5.6 60 218-310 61-120 (174)
232 2cpt_A SKD1 protein, vacuolar 29.8 26 0.0009 32.2 2.5 35 67-101 15-49 (117)
233 2r39_A FIXG-related protein; s 28.4 2.4E+02 0.0081 25.3 8.8 30 458-487 67-100 (118)
234 4acq_A Alpha-2-macroglobulin; 26.8 3.7E+02 0.012 34.9 13.2 80 375-488 774-853 (1451)
235 2ond_A Cleavage stimulation fa 26.7 2.7E+02 0.0091 28.3 10.1 116 15-135 136-266 (308)
236 2hr0_B Complement C3 alpha' ch 26.1 2.3E+02 0.008 34.6 10.9 74 213-318 89-163 (915)
237 3bee_A Putative YFRE protein; 25.4 1.9E+02 0.0065 24.6 7.3 44 86-135 25-68 (93)
238 3prx_B Cobra venom factor; imm 24.6 2.1E+02 0.0073 37.6 10.5 74 213-318 822-895 (1642)
239 2h6f_A Protein farnesyltransfe 24.5 1E+02 0.0034 33.6 6.5 24 76-99 103-126 (382)
240 2bn5_A PSI; nuclear protein, s 23.4 63 0.0022 23.0 2.8 24 17-40 6-29 (33)
241 3e4b_A ALGK; tetratricopeptide 23.2 3.8E+02 0.013 29.2 11.2 46 81-135 262-312 (452)
242 4ep8_B Urease subunit beta; al 22.0 1.1E+02 0.0036 27.5 4.7 67 379-471 14-82 (101)
243 2cri_A Vesicle-associated memb 21.8 4.9E+02 0.017 24.2 10.4 35 695-730 21-55 (147)
244 2wpv_A GET4, UPF0363 protein Y 21.7 2.8E+02 0.0097 29.6 9.2 25 111-135 135-159 (312)
245 4b4t_R RPN7, 26S proteasome re 21.0 1.4E+02 0.0049 33.0 7.0 98 14-135 132-233 (429)
246 4ac7_B Urease subunit beta; hy 20.8 1.3E+02 0.0045 27.9 5.3 70 377-472 18-89 (126)
247 4ubp_B Protein (urease (chain 20.8 1.3E+02 0.0045 27.9 5.3 70 377-472 18-89 (126)
248 4acq_A Alpha-2-macroglobulin; 20.5 2.2E+02 0.0075 37.0 9.3 72 213-318 777-848 (1451)
249 3qis_A Inositol polyphosphate 20.4 1.1E+02 0.0038 33.4 5.7 76 364-472 25-101 (366)
250 1b89_A Protein (clathrin heavy 20.3 68 0.0023 36.2 4.1 50 72-135 124-173 (449)
251 1xo8_A AT1G01470; structural g 20.3 80 0.0027 30.1 4.1 27 219-245 39-65 (151)
No 1
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.73 E-value=0.012 Score=62.52 Aligned_cols=126 Identities=15% Similarity=0.100 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHhHhC-----cchhhHHHHHHHHHhhhhccCCC------------------c
Q 002942 9 QQNATRCGLWWVEMLKARHQYKDAATVYFRICG-----EEPLHSAVMLEQASYCYLLSKPP------------------M 65 (863)
Q Consensus 9 ~~~A~R~all~~E~lk~~~~~~eAa~~Lir~ts-----ed~L~SALLLEQAA~c~L~~~pp------------------m 65 (863)
..-|..+---.+.+++..|.|.+|...+.++.. .+....|-.+.++|.||...... .
T Consensus 32 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~ 111 (307)
T 2ifu_A 32 YDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT 111 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 344555555556788888999999888877553 12245677778888877764321 1
Q ss_pred chhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 66 LHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 66 ~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.+..+-.+.-.|.-|.+ |+...|+.+|++|+.+|...+-......++..||..+..+|+++.|+.+|.+
T Consensus 112 ~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 112 PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 23446667778888988 9999999999999999987654444456788999999999999999988755
No 2
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.13 E-value=0.025 Score=59.47 Aligned_cols=127 Identities=11% Similarity=0.064 Sum_probs=91.6
Q ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHhHhCc-----chhhHHHHHHHHHhhhhccCCC------------------c
Q 002942 9 QQNATRCGLWWVEMLKARHQYKDAATVYFRICGE-----EPLHSAVMLEQASYCYLLSKPP------------------M 65 (863)
Q Consensus 9 ~~~A~R~all~~E~lk~~~~~~eAa~~Lir~tse-----d~L~SALLLEQAA~c~L~~~pp------------------m 65 (863)
..-|..+---.+.+++..|.|.+|...+.++..- +.-..|..+..+|.||.....+ .
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~ 112 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ 112 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 4455556556677888999999999888775431 2234466666677766654221 1
Q ss_pred chhhHhHHHhhccchhcC-CCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 66 LHKYGFHLVLSGDRYKKC-DQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 66 ~RKyAfhmVLAGhRyska-gqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.+..|..+.-.|.-|.+. |+...|+.||.+|+.++.+.+.....-.++..+|..+..+|++++|+.+|.+
T Consensus 113 ~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 183 (292)
T 1qqe_A 113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK 183 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 222355666778889885 9999999999999999987654433345678899999999999999988866
No 3
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.08 E-value=0.35 Score=49.51 Aligned_cols=175 Identities=14% Similarity=0.140 Sum_probs=109.0
Q ss_pred CCceeecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeee
Q 002942 211 ESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSE 290 (863)
Q Consensus 211 ~~~~~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 290 (863)
+.....+|++....+.++|.=+-||.++.++| +.+ +.+..
T Consensus 11 dFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~---------------------------------------~~~~~ 50 (220)
T 2qsv_A 11 LFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSF---------------------------------------VSLDD 50 (220)
T ss_dssp ECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTT---------------------------------------EECSC
T ss_pred EcccccCCCcceEEEEEEeCCCCceEEEeccC-CCc---------------------------------------eEeee
Confidence 46667789999999999999999999998764 111 11112
Q ss_pred eeEEECCCceEEEEEEEEeCce---eEEEEEEEEEEec----cceeeEEEeecchhhhhhccccccccCCCCCceEEEEe
Q 002942 291 VDISLGGAETILVQLMVTPKVE---GILKIVGVRWRLS----GSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVI 363 (863)
Q Consensus 291 ~~i~L~p~etk~V~L~v~P~~~---G~L~I~Gv~~~L~----g~v~g~~~F~i~g~rl~~tK~kr~~~~~pd~~L~~~V~ 363 (863)
..-.|.|+++-.|.+++-+... |..+= -+..... +.. ....+. ++..+.
T Consensus 51 ~~~~I~PG~~g~I~vt~~~~~~~~~G~~~~-~i~v~~~~~~~~~~-~~~~i~----------------------v~g~v~ 106 (220)
T 2qsv_A 51 RAFRLQAREPRELNLSLAVPRNMPPGMKDE-PLVLEVTSPETGKK-AVDSVM----------------------VSLPLV 106 (220)
T ss_dssp CEEEECSSSCEEEEEEECCCTTCCSEEEEE-EEEEEEECTTTCCE-EEEEEE----------------------EEEEEC
T ss_pred CcceeCCCCceEEEEEEcchhcccCCceee-EEEEEEEcCCCCcc-cccEEE----------------------EEEEEc
Confidence 3577889998888888888764 43221 0111111 111 000111 222223
Q ss_pred c--------CCCeEEEEEecCCccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccc
Q 002942 364 K--------SLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNA 435 (863)
Q Consensus 364 ~--------~~P~L~v~~~~~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~ 435 (863)
+ ..|.+++. ..+...-+.|+.....++|+|.|..|+.=-.+.++.. +.
T Consensus 107 p~~~~~~~~~~~~i~~~-~~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~scg-ct---------------------- 162 (220)
T 2qsv_A 107 DNFPALTAAQTGVMELS-TYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRNP-AL---------------------- 162 (220)
T ss_dssp CCGGGCCGGGCCCEECC-CEEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECST-TE----------------------
T ss_pred ccchhhhhccCCEEEEE-eEEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCCC-CE----------------------
Confidence 2 35666554 3333222229999999999999999986555555433 11
Q ss_pred cccccCCCCCCCCcceeecCCCcccCCCCeEEEEEEEEecCC-ce----eEEEEEEEEe
Q 002942 436 EQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVP-GK----ISLSITIYYE 489 (863)
Q Consensus 436 e~~~~~~~~~~~~~~v~~~P~~~~L~pGes~~lPlwlra~~~-G~----~~l~lLfyYe 489 (863)
+..++ ...|+||++.++-+.+.+... |. ..-.+.+|-.
T Consensus 163 ---------------~~~~~-~~~i~PGe~~~i~v~~~~~~~~g~~~~~~~~~i~v~~N 205 (220)
T 2qsv_A 163 ---------------TAVPD-RTEIKPGGSTLLRIAVDPQVMKAEGWQSIAADISIICN 205 (220)
T ss_dssp ---------------EEEES-CSEECTTCEEEEEEEECHHHHHHTTCSEEEEEEEEEES
T ss_pred ---------------eeecC-CccCCCCCEEEEEEEEecCCCCCcccceeccEEEEEEC
Confidence 11122 345999999999999998854 87 7777777654
No 4
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.20 E-value=0.18 Score=45.51 Aligned_cols=126 Identities=12% Similarity=0.027 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHhHhC-----cchhhHHHHHHHHHhhhhccCCCc------------------c
Q 002942 10 QNATRCGLWWVEMLKARHQYKDAATVYFRICG-----EEPLHSAVMLEQASYCYLLSKPPM------------------L 66 (863)
Q Consensus 10 ~~A~R~all~~E~lk~~~~~~eAa~~Lir~ts-----ed~L~SALLLEQAA~c~L~~~ppm------------------~ 66 (863)
....++-...+.++...|.|.+|-..+-++-. .+....+..+-..|.+|....... .
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 34456667777888888999888877766432 222223334444455444332110 1
Q ss_pred hhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 67 HKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 67 RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
...+.-+..-|.-|...|+...|+.+|.+|+.+++..+.....-.+++.+|+.+..+|+++.|++++.+
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 112334455577788889999999999999998877665555567788899999999999999877644
No 5
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.94 E-value=0.066 Score=56.18 Aligned_cols=106 Identities=10% Similarity=0.051 Sum_probs=77.5
Q ss_pred chHHHHHHHHhHhC----cch-hhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcC
Q 002942 28 QYKDAATVYFRICG----EEP-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG 102 (863)
Q Consensus 28 ~~~eAa~~Lir~ts----ed~-L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~ 102 (863)
.|.+|+..+-++.. ... =.+.-.+++|.-++.... .....|..+.-.|.-|.+.|+...|+.||.+|+.+|..
T Consensus 32 ~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~ 109 (292)
T 1qqe_A 32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTH 109 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46666666655431 111 235556777777665443 23456778889999999999999999999999999987
Q ss_pred CCccchhhhHHHHHHHHHHHh-CCHHHHHHHHHH
Q 002942 103 STWSHIKDHVHFHIGQWYAVL-GMHDIAVAHMLE 135 (863)
Q Consensus 103 ~~W~~~edHI~~tLGrq~~~L-g~~~~Av~h~l~ 135 (863)
.+.....-..+..||..+... |+++.|+.++.+
T Consensus 110 ~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 110 RGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 665443345677899999995 999999988765
No 6
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=94.85 E-value=0.058 Score=57.10 Aligned_cols=107 Identities=13% Similarity=0.052 Sum_probs=80.9
Q ss_pred ccchHHHHHHHHhHhC----cch-hhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhh
Q 002942 26 RHQYKDAATVYFRICG----EEP-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVY 100 (863)
Q Consensus 26 ~~~~~eAa~~Lir~ts----ed~-L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY 100 (863)
.+.|.+|+..+.++.. ... -.+.-.+++|+.++.... ..+..+..+.-+|.-|.+.|....|+.||.+|+.+|
T Consensus 29 ~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 106 (307)
T 2ifu_A 29 KPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY 106 (307)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3567777777766532 112 346667788888765443 446778899999999999999999999999999999
Q ss_pred cCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 101 KGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 101 ~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
...+-..-.-..+..||..+.. |+++.|+.++.+
T Consensus 107 ~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 107 VENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 8766443333567788999988 999999988755
No 7
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=94.62 E-value=0.2 Score=47.91 Aligned_cols=91 Identities=15% Similarity=0.036 Sum_probs=65.2
Q ss_pred HHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHH
Q 002942 16 GLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRS 95 (863)
Q Consensus 16 all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~ 95 (863)
-+..+.++...|.|.+|...|-++...++ - .+..+..-|.-|.+.|+...|+.||++
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~P-------------------~----~~~~~~~lg~~~~~~g~~~~Ai~~~~~ 95 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDF-------------------Y----NVDYIMGLAAIYQIKEQFQQAADLYAV 95 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------T----CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------C----CHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 34455666777888888777766554433 0 111122235566688999999999999
Q ss_pred HHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 96 AVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 96 A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|+.+.-+.. ..++.+|..+..+|++++|+++|.+
T Consensus 96 al~l~P~~~------~~~~~lg~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 96 AFALGKNDY------TPVFHTGQCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp HHHHSSSCC------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhCCCCc------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999865533 4789999999999999999988865
No 8
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=94.00 E-value=4 Score=48.54 Aligned_cols=173 Identities=12% Similarity=0.044 Sum_probs=108.6
Q ss_pred eecCceEEEEEEEeCcccccEEeeeEEEEEEEec--CCCccccCCCCCcccccccccccccccccccCCCCCce-eeeee
Q 002942 215 CVAGEPVKVDIEFKNPLQIPISISNISLICELST--RSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSF-TLSEV 291 (863)
Q Consensus 215 ~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f-~~~~~ 291 (863)
...|++|.|.|.++|.=.-+- .+++...... =++.. . . .+ .-...
T Consensus 483 ~~~G~df~v~v~~~N~s~~~~---~v~~~l~a~~v~YtG~~----------------~--~-----------~~~~~~~~ 530 (687)
T 2q3z_A 483 MNMGSDFDVFAHITNNTAEEY---VCRLLLCARTVSYNGIL----------------G--P-----------ECGTKYLL 530 (687)
T ss_dssp CBTTCCEEEEEEEEECSSSCE---EEEEEEEEEEECTTCCE----------------E--E-----------EEEEEEEE
T ss_pred CcCCCCEEEEEEEEECCCCCE---EEEEEEEEEEEeeCCcc----------------c--c-----------eEeeeeee
Confidence 458999999999999987663 3444432221 11100 0 0 12 22446
Q ss_pred eEEECCCceEEEEEEEEeCc-------eeEEEEEEEEEEeccc---eeeEEEeecchhhhhhccccccccCCCCCceEEE
Q 002942 292 DISLGGAETILVQLMVTPKV-------EGILKIVGVRWRLSGS---LVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFI 361 (863)
Q Consensus 292 ~i~L~p~etk~V~L~v~P~~-------~G~L~I~Gv~~~L~g~---v~g~~~F~i~g~rl~~tK~kr~~~~~pd~~L~~~ 361 (863)
.++|+|++.+.|.+.+.+.. .+.++|..+. ++... +....+|.+
T Consensus 531 ~~~l~p~~~~~v~~~i~y~~Y~~~L~d~~~i~~~a~~-~v~et~~~~~~~~di~l------------------------- 584 (687)
T 2q3z_A 531 NLTLEPFSEKSVPLCILYEKYRDCLTESNLIKVRALL-VEPVINSYLLAERDLYL------------------------- 584 (687)
T ss_dssp EEEECTTEEEEEEEEECHHHHTTTCCTTCEEEEEEEE-EETTTTEEEEEEEEEEC-------------------------
T ss_pred EEEECCCceEEEEEEECHHHHhhhccCCCEEEEEEEE-EECCCCeEEEEEEEEEE-------------------------
Confidence 89999999999999998763 3566665332 22110 111222222
Q ss_pred EecCCCeEEEEEecCCccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccC
Q 002942 362 VIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAG 441 (863)
Q Consensus 362 V~~~~P~L~v~~~~~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~ 441 (863)
..|-|.+++. .....|+-..+.++|+|.=..||++..+.+..+... .
T Consensus 585 ---~~P~l~I~v~---g~~~v~~~~~v~v~f~NPL~~~L~~c~~~vEG~GL~------~--------------------- 631 (687)
T 2q3z_A 585 ---ENPEIKIRIL---GEPKQKRKLVAEVSLQNPLPVALEGCTFTVEGAGLT------E--------------------- 631 (687)
T ss_dssp ---BCCCCEEEEE---SCCSSSSCEEEEEEEECCSSSCBCSEEEEEECTTTC------S---------------------
T ss_pred ---eCCCEEEEeC---CCcccCCeEEEEEEEECCCCCcccceEEEEECCCCC------C---------------------
Confidence 2344555543 344569999999999999999999987776666221 0
Q ss_pred CCCCCCCcceeecCCCcccCCCCeEEEEEEEEecCCceeEEEEEE
Q 002942 442 GNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITI 486 (863)
Q Consensus 442 ~~~~~~~~~v~~~P~~~~L~pGes~~lPlwlra~~~G~~~l~lLf 486 (863)
++..+.++ ..|.||++.++.+-+.....|.+.|-.-|
T Consensus 632 ------~~~~~~~~--~~v~pg~~~~~~~~~~P~~~G~~~L~a~f 668 (687)
T 2q3z_A 632 ------EQKTVEIP--DPVEAGEEVKVRMDLVPLHMGLHKLVVNF 668 (687)
T ss_dssp ------SCEEEEEC--SCBCTTCEEEEEEEECCCSSSCEEEEEEE
T ss_pred ------CceEEecC--CCcCCCCEEEEEEEEEeccccceEEEEEE
Confidence 01122331 24999999999999999999998864444
No 9
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=93.96 E-value=0.35 Score=45.46 Aligned_cols=92 Identities=15% Similarity=0.093 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHH
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYR 94 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~ 94 (863)
+-+..+.++-..|.|.+|...|-++...++- .+-.+- .-|.-|.+.|+..-|+.||+
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~----------------------~lg~~~~~~g~~~~A~~~~~ 79 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFL----------------------GLGACRQAMGQYDLAIHSYS 79 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH----------------------HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHH----------------------HHHHHHHHHhhHHHHHHHHH
Confidence 3445566777889999988877766544430 111111 22444557789999999999
Q ss_pred HHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 95 SAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 95 ~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+|+.+.-+.. ..++.+|..+..+|++++|+++|.+
T Consensus 80 ~al~l~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 80 YGAVMDIXEP------RFPFHAAECLLQXGELAEAESGLFL 114 (148)
T ss_dssp HHHHHSTTCT------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcCCCCc------hHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999854332 4678999999999999999988855
No 10
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=93.68 E-value=4.7 Score=47.88 Aligned_cols=172 Identities=12% Similarity=0.078 Sum_probs=107.8
Q ss_pred eecCceEEEEEEEeCcccccEEeeeEEEEEEEe--cCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeee
Q 002942 215 CVAGEPVKVDIEFKNPLQIPISISNISLICELS--TRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 292 (863)
Q Consensus 215 ~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~ 292 (863)
...|++|.|.|.++|.=.-+-. +++..... .=++.. .. .+.-....
T Consensus 492 ~~~G~df~v~l~~~N~s~~~~~---v~~~l~a~~v~YtG~~----------------~~-------------~~~~~~~~ 539 (692)
T 1vjj_A 492 LAVGKEVNLVLLLKNLSRDTKT---VTVNMTAWTIIYNGTL----------------VH-------------EVWKDSAT 539 (692)
T ss_dssp CBTTSCEEEEEEEEECSSSCEE---EEEEEEEEEECTTCCE----------------EE-------------EEEEEEEE
T ss_pred CCCCCCEEEEEEEEECCCCCEE---EEEEEEEEEEeeCCcc----------------cc-------------ceEEeeEE
Confidence 4579999999999998776533 33333221 111100 00 12223458
Q ss_pred EEECCCceEEEEEEEEeCc-------eeEEEEEEEEEEecc--ceeeEEEeecchhhhhhccccccccCCCCCceEEEEe
Q 002942 293 ISLGGAETILVQLMVTPKV-------EGILKIVGVRWRLSG--SLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVI 363 (863)
Q Consensus 293 i~L~p~etk~V~L~v~P~~-------~G~L~I~Gv~~~L~g--~v~g~~~F~i~g~rl~~tK~kr~~~~~pd~~L~~~V~ 363 (863)
++|+|+|++.+.+.+.+.. .+.++|..+. ++.. .+.... .+.
T Consensus 540 v~L~p~~~~~i~~~i~y~~Y~~~L~d~~~i~~~a~~-~v~et~~~~~~~----------------------------di~ 590 (692)
T 1vjj_A 540 MSLDPEEEAEHPIKISYAQYERYLKSDNMIRITAVC-KVPDESEVVVER----------------------------DII 590 (692)
T ss_dssp EEECTTCEEEEEEEECHHHHHTTCCTTCEEEEEEEE-ECTTSCCEEEEE----------------------------EEE
T ss_pred EEECCCceEEEEEEECHHHHhhhcccCCeEEEEEEE-EECCCceEEEEE----------------------------EEE
Confidence 9999999999999998763 3556665332 1111 011111 122
Q ss_pred cCCCeEEEEEecCCccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCC
Q 002942 364 KSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGN 443 (863)
Q Consensus 364 ~~~P~L~v~~~~~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~ 443 (863)
=..|-|.+.+. .....|+-..+.++|+|.=..||++..+.+..+..+ .
T Consensus 591 l~~P~l~I~v~---g~~~v~~~l~v~v~f~NPL~~~L~~c~~~vEG~GL~------~----------------------- 638 (692)
T 1vjj_A 591 LDNPTLTLEVL---NEARVRKPVNVQMLFSNPLDEPVRDCVLMVEGSGLL------L----------------------- 638 (692)
T ss_dssp CBCCCEEEEEC---SCCBTTSCEEEEEEEECCSSSCBCSEEEEEECTTTS------S-----------------------
T ss_pred EcCCCEEEEeC---CCcccCCeEEEEEEEECCCCCcccceEEEEECCCCC------C-----------------------
Confidence 23455666653 445669999999999999999999987776666221 0
Q ss_pred CCCCCcceeecCCCcccCCCCeEEEEEEEEecCCceeEEEEEE
Q 002942 444 FNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITI 486 (863)
Q Consensus 444 ~~~~~~~v~~~P~~~~L~pGes~~lPlwlra~~~G~~~l~lLf 486 (863)
.+..+.+ ..|.||++.++.+-+.....|.+.|-.-|
T Consensus 639 ----~~~~~~~---~~v~pg~~~~~~~~~~P~~~G~r~L~a~f 674 (692)
T 1vjj_A 639 ----GNLKIDV---PTLGPKERSRVRFDILPSRSGTKQLLADF 674 (692)
T ss_dssp ----SCEEEEE---CCBCTTCEEEEEEEECCCSCEEEEEEEEE
T ss_pred ----CceEEEc---CccCCCCEEEEEEEEEeccccceEEEEEE
Confidence 0112222 24999999999999999999998865444
No 11
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=93.62 E-value=0.68 Score=40.58 Aligned_cols=95 Identities=9% Similarity=-0.048 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHH
Q 002942 12 ATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIR 91 (863)
Q Consensus 12 A~R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlR 91 (863)
..++-+..+.++...|.|.+|...|-++...+.- .+-.+ ..-|.-|.+.|+...|+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~----------------------~~la~~~~~~~~~~~A~~ 71 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLY----------------------SNRAACYTKLLEFQLALK 71 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHH----------------------HHHHHHHTTTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHH----------------------HHHHHHHHHhccHHHHHH
Confidence 3455566677788889999988877776654430 11111 223444556788899999
Q ss_pred HHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 92 TYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 92 CY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+|.+|+..+... ..+.+.+|..+..+|+++.|+++|.+
T Consensus 72 ~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (133)
T 2lni_A 72 DCEECIQLEPTF------IKGYTRKAAALEAMKDYTKAMDVYQK 109 (133)
T ss_dssp HHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCc------hHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999986542 34778999999999999999988755
No 12
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=93.61 E-value=0.45 Score=43.75 Aligned_cols=92 Identities=14% Similarity=0.101 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHH
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYR 94 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~ 94 (863)
+.+..+..+-..|.|.+|...|-++...++- .+-.+ ..-|.-|.+.|+...|+.||.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~----------------------~~lg~~~~~~g~~~~A~~~~~ 76 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYF----------------------LGLGACRQSLGLYEQALQSYS 76 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH----------------------HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHH----------------------HHHHHHHHHHhhHHHHHHHHH
Confidence 3445566777888999988877665543330 01111 122444557788999999999
Q ss_pred HHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 95 SAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 95 ~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+|+...-... ..++.+|..+..+|++++|+++|..
T Consensus 77 ~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 77 YGALMDINEP------RFPFHAAECHLQLGDLDGAESGFYS 111 (142)
T ss_dssp HHHHHCTTCT------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcCCCCc------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999864432 4678999999999999999988755
No 13
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=93.60 E-value=0.31 Score=46.34 Aligned_cols=54 Identities=26% Similarity=0.309 Sum_probs=35.5
Q ss_pred hccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 76 SGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 76 AGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
-|.-|.+.|+...|+.+|.+|+++.... -.+++.+|..+..+|++++|+++|-+
T Consensus 113 lg~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 113 LGLVYDSMGEHDKAIEAYEKTISIKPGF------IRAYQSIGLAYEGKGLRDEAVKYFKK 166 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCchhHHHHHHHHHHhcchh------hhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3566666777777777777777653221 23567777777777888877776644
No 14
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=93.51 E-value=0.47 Score=44.54 Aligned_cols=93 Identities=15% Similarity=0.020 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHH
Q 002942 14 RCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTY 93 (863)
Q Consensus 14 R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY 93 (863)
..-+..+.++-..|.|.+|...|-++-..+. ..+.+ +..-|.-|.+.|+...|+.+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~----------------------~~~l~~~~~~~g~~~~A~~~~ 68 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIY----------------------LSNRAAAYSASGQHEKAAEDA 68 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHH----------------------HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHH----------------------HHHHHHHHHHccCHHHHHHHH
Confidence 3445566777788999999887766654333 01112 222344455678889999999
Q ss_pred HHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 94 RSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 94 ~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.+|+.+.... -..++.+|..+..+|+++.|+++|.+
T Consensus 69 ~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~ 104 (164)
T 3sz7_A 69 ELATVVDPKY------SKAWSRLGLARFDMADYKGAKEAYEK 104 (164)
T ss_dssp HHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999986432 35788999999999999999988865
No 15
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=93.44 E-value=0.27 Score=46.78 Aligned_cols=111 Identities=15% Similarity=0.189 Sum_probs=78.6
Q ss_pred HHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCc------------chhhHhHHHhhccchhcCCC
Q 002942 18 WWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPM------------LHKYGFHLVLSGDRYKKCDQ 85 (863)
Q Consensus 18 l~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm------------~RKyAfhmVLAGhRyskagq 85 (863)
..+.++..+|.|.+|-..|-++-..++ ..+-.+-.-|.||...+... ..+.+.-+...|..|.+.++
T Consensus 10 ~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (184)
T 3vtx_A 10 DIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDE 88 (184)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCC
Confidence 457788999999999999888765543 11122333344444432210 11234556667888999999
Q ss_pred cHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 86 INHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 86 r~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
...|+.+|.+|....... ....+.+|..+..+|++++|++.|-+
T Consensus 89 ~~~a~~~~~~a~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (184)
T 3vtx_A 89 KQAAIDALQRAIALNTVY------ADAYYKLGLVYDSMGEHDKAIEAYEK 132 (184)
T ss_dssp HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 999999999999876543 24678899999999999999988855
No 16
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=93.38 E-value=0.082 Score=48.01 Aligned_cols=67 Identities=27% Similarity=0.346 Sum_probs=47.6
Q ss_pred eeecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 002942 214 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 293 (863)
Q Consensus 214 ~~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i 293 (863)
.+++|+++.++|+|+|||.++| +|..|..++..-. .+- ...-=
T Consensus 15 ~~~v~~~l~v~vsf~NPL~~~L--~~c~~~vEG~GL~---------------------~~~--------------~~~~~ 57 (102)
T 2xzz_A 15 AAVVGQECEVQIVFKNPLPVTL--TNVVFRLEGSGLQ---------------------RPK--------------ILNVG 57 (102)
T ss_dssp CCCSSSCEEEEEEEECCSSSCB--CSEEEEEEETTTE---------------------EEE--------------EEEEC
T ss_pred CcccCCeEEEEEEEECCCCCcc--cCEEEEEECCCCC---------------------cce--------------EEEcC
Confidence 3578999999999999998876 4666665543210 000 00112
Q ss_pred EECCCceEEEEEEEEeCceeEEEE
Q 002942 294 SLGGAETILVQLMVTPKVEGILKI 317 (863)
Q Consensus 294 ~L~p~etk~V~L~v~P~~~G~L~I 317 (863)
.++|+++-.+++.++|.+.|.=++
T Consensus 58 ~v~pg~~~~~~~~~~P~~~G~~~L 81 (102)
T 2xzz_A 58 DIGGNETVTLRQSFVPVRPGPRQL 81 (102)
T ss_dssp CBCTTCEEEEEEEECCCSCSSCCC
T ss_pred cCCCCCEEEEEEEEecCcccceEE
Confidence 389999999999999999997554
No 17
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=93.30 E-value=0.38 Score=51.80 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=85.3
Q ss_pred HHHHHHHHHhccchHHHHHHHHhHhC-----cchhhHHHHHHHHHhhhhccCCC------------------c-chhhHh
Q 002942 16 GLWWVEMLKARHQYKDAATVYFRICG-----EEPLHSAVMLEQASYCYLLSKPP------------------M-LHKYGF 71 (863)
Q Consensus 16 all~~E~lk~~~~~~eAa~~Lir~ts-----ed~L~SALLLEQAA~c~L~~~pp------------------m-~RKyAf 71 (863)
-++.+.++...|.|.+|-..+-++-. .|....|..+-..|.||...+.. . ....+.
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 34466777888999999888877543 22244555555666665543321 1 222344
Q ss_pred HHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 72 HLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 72 hmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
-+..-|.-|...|+...|+.+|.+|+.+++..+-....-.+.+.||..+..+|+++.|+++|.+
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 249 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4555678889999999999999999999987654444456788899999999999999988765
No 18
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=93.20 E-value=0.67 Score=41.18 Aligned_cols=90 Identities=10% Similarity=-0.012 Sum_probs=63.6
Q ss_pred HHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHH
Q 002942 17 LWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSA 96 (863)
Q Consensus 17 ll~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A 96 (863)
...+..+-..|.|.+|...|-++-..++ ..+.++- .-|.-|.+.|+...|+.+|.+|
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~----------------------~~a~~~~~~~~~~~A~~~~~~a 64 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYS----------------------NRAAALAKLMSFPEAIADCNKA 64 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH----------------------HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHH----------------------HHHHHHHHhcCHHHHHHHHHHH
Confidence 3445666778889988887766554333 1112222 2344455678889999999999
Q ss_pred HhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 97 VSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 97 ~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+.+.... ...++.+|..+..+|++++|+.+|.+
T Consensus 65 l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~ 97 (126)
T 3upv_A 65 IEKDPNF------VRAYIRKATAQIAVKEYASALETLDA 97 (126)
T ss_dssp HHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhCCCc------HHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 9985332 34788999999999999999988755
No 19
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=93.14 E-value=0.46 Score=42.47 Aligned_cols=93 Identities=24% Similarity=0.196 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHH
Q 002942 14 RCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTY 93 (863)
Q Consensus 14 R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY 93 (863)
..-+..+.++-..|.|.+|...+-++-..++ ..+.. +..-|.-|.+.|+...|+.+|
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~----------------------~~~l~~~~~~~~~~~~A~~~~ 66 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVY----------------------YTNRALCYLKMQQPEQALADC 66 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH----------------------HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHH----------------------HHHHHHHHHHhcCHHHHHHHH
Confidence 3445666777788999988887766554333 01111 222345555678889999999
Q ss_pred HHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 94 RSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 94 ~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.+|+.+..+ .-..++.+|..+..+|+++.|+.+|.+
T Consensus 67 ~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 67 RRALELDGQ------SVKAHFFLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp HHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCch------hHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999998644 224788999999999999999988865
No 20
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=93.13 E-value=0.75 Score=40.55 Aligned_cols=94 Identities=16% Similarity=0.121 Sum_probs=65.8
Q ss_pred HHHHHHHHhccchHHHHHHHHhHhCcch--hhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHH
Q 002942 17 LWWVEMLKARHQYKDAATVYFRICGEEP--LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYR 94 (863)
Q Consensus 17 ll~~E~lk~~~~~~eAa~~Lir~tsed~--L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~ 94 (863)
+..+.++-..|.|.+|...|-++...++ ...+-.+ ..-|.-|.+.|+...|+.+|.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~----------------------~~lg~~~~~~~~~~~A~~~~~ 63 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNAL----------------------YWLGESYYATRNFQLAEAQFR 63 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHH----------------------HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHH----------------------HHHHHHHHHhccHHHHHHHHH
Confidence 4456677788999999887776554222 1111111 222444556788999999999
Q ss_pred HHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 95 SAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 95 ~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+++..+.+..+ .....+.+|..+..+|+++.|+..|..
T Consensus 64 ~~~~~~p~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~ 101 (129)
T 2xev_A 64 DLVSRYPTHDK---AAGGLLKLGLSQYGEGKNTEAQQTLQQ 101 (129)
T ss_dssp HHHHHCTTSTT---HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHCCCCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99998865432 234678999999999999999987754
No 21
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=93.05 E-value=0.37 Score=57.11 Aligned_cols=86 Identities=19% Similarity=0.288 Sum_probs=59.0
Q ss_pred eeecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 002942 214 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 293 (863)
Q Consensus 214 ~~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i 293 (863)
..++|+++.++|.|+|||.+||. |..+..++..- ..+ -...+
T Consensus 594 ~~~v~~~l~a~vsf~NPL~~~L~--~c~~~vEG~GL---------------------~~~---------------~~~~~ 635 (695)
T 1g0d_A 594 KAVVWEPLTAYVSFTNPLPVPLK--GGVFTLEGAGL---------------------LSA---------------TQIHV 635 (695)
T ss_dssp CEETTCCEEEEEEEECCSSSCEE--SCEEEEEETTT---------------------EEE---------------EEEEC
T ss_pred CcccCCeEEEEEEEECCCCCccc--ceEEEEECCCC---------------------Ccc---------------eEEec
Confidence 46789999999999999988765 55555443321 000 11244
Q ss_pred --EECCCceEEEEEEEEeCceeEEEEE-EEEEEeccceeeEEEeecc
Q 002942 294 --SLGGAETILVQLMVTPKVEGILKIV-GVRWRLSGSLVGVYNFESN 337 (863)
Q Consensus 294 --~L~p~etk~V~L~v~P~~~G~L~I~-Gv~~~L~g~v~g~~~F~i~ 337 (863)
.++|+++-.+++.++|.+.|.=++. .+.-+-...|.|+..+.+.
T Consensus 636 ~~~v~Pg~~~~~~~~~~P~~~G~r~L~a~f~s~~l~~v~G~~~v~V~ 682 (695)
T 1g0d_A 636 NGAVAPSGKVSVKLSFSPMRTGVRKLLVDFDSDRLKDVKGVTTVVVH 682 (695)
T ss_dssp SSEECTTCEEEEEEEECCSSCEEEEEEEEEECSSCCCEEEEEEEEEE
T ss_pred CCCcCCCCEEEEEEEEEcCCccceEEEEEEECCcccCcEeEEEEEEe
Confidence 6899999999999999999987763 2222223457777776653
No 22
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=93.05 E-value=0.26 Score=52.35 Aligned_cols=105 Identities=11% Similarity=-0.005 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHH
Q 002942 12 ATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIR 91 (863)
Q Consensus 12 A~R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlR 91 (863)
...+-++.++++...|.|.+|...|-++-..+ |......+.-+..-|.-|...|+...|+.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 68 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-------------------TEDLKTLSAIYSQLGNAYFYLHDYAKALE 68 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------CSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-------------------cccHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 34455678889999999999988776543211 11111112222233445557788999999
Q ss_pred HHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 92 TYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 92 CY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+|.+|+.+++..+.....-.+++.+|..+..+|+++.|+.++.+
T Consensus 69 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 112 (406)
T 3sf4_A 69 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 112 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999887665544556788999999999999999987654
No 23
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=93.01 E-value=0.73 Score=46.81 Aligned_cols=124 Identities=11% Similarity=-0.050 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHhHhCc-------chhhHHHHHHHHHhhhhccCCC--------------------
Q 002942 12 ATRCGLWWVEMLKARHQYKDAATVYFRICGE-------EPLHSAVMLEQASYCYLLSKPP-------------------- 64 (863)
Q Consensus 12 A~R~all~~E~lk~~~~~~eAa~~Lir~tse-------d~L~SALLLEQAA~c~L~~~pp-------------------- 64 (863)
..++-...+.++...|.|.+|...+-++-.. +....+..+...|.||......
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567777888899999999988877765531 3322334444444444443221
Q ss_pred cchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCC--CccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 65 MLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGS--TWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 65 m~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~--~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.....+.-+..-|.-|.+.|+...|+.+|.+|+.+++.. +-..-.-.+.+.+|+.+..+|++++|+.+|.+
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 112234445566788899999999999999999998532 22222345778899999999999999988755
No 24
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=93.01 E-value=0.84 Score=39.15 Aligned_cols=96 Identities=18% Similarity=0.209 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHH
Q 002942 11 NATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAI 90 (863)
Q Consensus 11 ~A~R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAl 90 (863)
...++-+..+.++...|.|.+|...|-++-..+. .. ..-+..-|.-|.+.|+...|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-------------------~~----~~~~~~la~~~~~~~~~~~A~ 63 (125)
T 1na0_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------------------NN----AEAWYNLGNAYYKQGDYDEAI 63 (125)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TC----HHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-------------------Cc----HHHHHHHHHHHHHhCCHHHHH
Confidence 3445566677888888999998887766543222 00 011122245566788999999
Q ss_pred HHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 91 RTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 91 RCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.+|.+++...... ..+.+.+|..+..+|+++.|+..|.+
T Consensus 64 ~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 64 EYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQK 102 (125)
T ss_dssp HHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCcc------HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999875432 24678899999999999999988755
No 25
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=92.96 E-value=0.89 Score=46.16 Aligned_cols=125 Identities=13% Similarity=0.047 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHhHhC-------cchhhHHHHHHHHHhhhhccCCC-------------------
Q 002942 11 NATRCGLWWVEMLKARHQYKDAATVYFRICG-------EEPLHSAVMLEQASYCYLLSKPP------------------- 64 (863)
Q Consensus 11 ~A~R~all~~E~lk~~~~~~eAa~~Lir~ts-------ed~L~SALLLEQAA~c~L~~~pp------------------- 64 (863)
...++-...+.++...|.|.+|-..+-++-. .+.-..+..+-..|.+|......
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 146 (311)
T 3nf1_A 67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 146 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC
Confidence 3456667778888889999998887766442 22222334444444444433221
Q ss_pred -cchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCC--CccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 65 -MLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGS--TWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 65 -m~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~--~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.....+.-+..-|.-|.+.|+...|+.+|.+|+.+++.. +.....-.+.+.+|+.+..+|++++|+++|.+
T Consensus 147 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 220 (311)
T 3nf1_A 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKE 220 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 112233445556788899999999999999999998764 22233345788999999999999999987755
No 26
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=92.88 E-value=1.1 Score=38.66 Aligned_cols=94 Identities=16% Similarity=0.080 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHH
Q 002942 13 TRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRT 92 (863)
Q Consensus 13 ~R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRC 92 (863)
..+-+..+.++...|.|.+|...|-++...+. ..+..+ ..-|.-|.+.|+...|+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~----------------------~~~a~~~~~~~~~~~A~~~ 68 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYF----------------------CNRAAAYSKLGNYAGAVQD 68 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH----------------------HHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHH----------------------HHHHHHHHHhhchHHHHHH
Confidence 44555667777788889988887766554332 011122 2233444566788999999
Q ss_pred HHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 93 YRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 93 Y~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.+|+...... ..+.+.+|..+..+|+++.|++.|.+
T Consensus 69 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 69 CERAICIDPAY------SKAYGRMGLALSSLNKHVEAVAYYKK 105 (131)
T ss_dssp HHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcCccC------HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999875432 35778999999999999999988755
No 27
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=92.46 E-value=0.77 Score=39.86 Aligned_cols=98 Identities=11% Similarity=-0.029 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHH
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYR 94 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~ 94 (863)
+-+..+.++...|.|.+|...|-++-..++- . +.-+..-|.-|...|+...|+.+|.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~----------------------~~~~~~la~~~~~~~~~~~A~~~~~ 62 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-N----------------------MTYITNQAAVYFEKGDYNKCRELCE 62 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C----------------------HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-c----------------------HHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3455667777888999888877665543320 0 1112223445556788999999999
Q ss_pred HHHhhhcCCC-ccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 95 SAVSVYKGST-WSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 95 ~A~~vY~~~~-W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+|+..+.... -......+++.+|..+..+|+++.|+++|..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 63 KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNK 104 (131)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999876431 1112256789999999999999999988855
No 28
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=92.42 E-value=0.49 Score=44.56 Aligned_cols=91 Identities=16% Similarity=0.189 Sum_probs=67.4
Q ss_pred EEEecCCCeEEEEEecCCccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccc
Q 002942 360 FIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSV 439 (863)
Q Consensus 360 ~~V~~~~P~L~v~~~~~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~ 439 (863)
+.+..++|-|.+.+. .|..+..|+...+.++++|.|..++.+..+.+- +++. ..
T Consensus 10 ~~~~~~~pDL~V~is-~P~~v~~G~~~ti~vtV~N~G~~~a~~~~V~ly------vng~-~v------------------ 63 (127)
T 3idu_A 10 LATTFEFPDLTVEIK-GPDVVGVNKLAEYEVHVKNLGGIGVPSTKVRVY------INGT-LY------------------ 63 (127)
T ss_dssp C--CCSSCCEEEEEE-SCSEECTTCCEEEEEEEEECSSSCEEEEEEEEE------ETTE-EE------------------
T ss_pred EeeeccCCCeEEEec-CCCcccCCCEEEEEEEEEECCCCccCCcEEEEE------ECCE-EE------------------
Confidence 345689999999665 799999999999999999999999988887641 1110 00
Q ss_pred cCCCCCCCCcceeecCCCcccCCCCeEEEEEEEEecCCceeEEEEEEEEee
Q 002942 440 AGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEM 490 (863)
Q Consensus 440 ~~~~~~~~~~~v~~~P~~~~L~pGes~~lPlwlra~~~G~~~l~lLfyYe~ 490 (863)
-.. ...|.+|++.++.+-......|.+.++..+-.+.
T Consensus 64 ------------~t~--~v~La~G~s~tv~f~~~~~~~G~~~v~AvVD~~n 100 (127)
T 3idu_A 64 ------------KNW--TVSLGPKEEKVLTFNWTPTQEGMYRINATVDEEN 100 (127)
T ss_dssp ------------EEE--EEEECTTCEEEEEEEECCSSCEEEEEEEEESTTC
T ss_pred ------------eeE--EeccCCCCeEEEEEEEEcCCCcEEEEEEEEcCCC
Confidence 000 1139999999999988755899999988875544
No 29
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.34 E-value=1.5 Score=39.19 Aligned_cols=94 Identities=18% Similarity=0.081 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHhHhCcch--hhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHH
Q 002942 14 RCGLWWVEMLKARHQYKDAATVYFRICGEEP--LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIR 91 (863)
Q Consensus 14 R~all~~E~lk~~~~~~eAa~~Lir~tsed~--L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlR 91 (863)
..-+..+.++...|.|.+|...|-++-..+. -..+.++... |.-|.+.|+...|+.
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~----------------------a~~~~~~~~~~~A~~ 86 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNR----------------------AACHLKLEDYDKAET 86 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH----------------------HHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHH----------------------HHHHHHHccHHHHHH
Confidence 4455667788888999999888877665433 0012222222 344456678899999
Q ss_pred HHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 92 TYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 92 CY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+|.+|+..+... -..++.+|..+..+|++++|+.+|.+
T Consensus 87 ~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~ 124 (148)
T 2dba_A 87 EASKAIEKDGGD------VKALYRRSQALEKLGRLDQAVLDLQR 124 (148)
T ss_dssp HHHHHHHHTSCC------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhCccC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999985432 35678999999999999999988755
No 30
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=92.26 E-value=0.83 Score=44.18 Aligned_cols=115 Identities=13% Similarity=0.146 Sum_probs=75.8
Q ss_pred HHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCc-----c-------hhhHhHHHhhccchhcCC
Q 002942 17 LWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPM-----L-------HKYGFHLVLSGDRYKKCD 84 (863)
Q Consensus 17 ll~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm-----~-------RKyAfhmVLAGhRyskag 84 (863)
+..+.++...|.|.+|...|-++...+. -.+-.-|.||+..+... + ...+.-+..-|.-|.+.|
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHS----RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 3446667778889988888877643221 12222233333221100 0 112333455678888999
Q ss_pred CcHHHHHHHHHHHhhhcCCC----------ccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 85 QINHAIRTYRSAVSVYKGST----------WSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 85 qr~hAlRCY~~A~~vY~~~~----------W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+...|+.+|.+|+....+.. ...-.-.+++.+|..+..+|+++.|+.+|..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999876644 2222336889999999999999999988866
No 31
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=92.23 E-value=0.5 Score=50.80 Aligned_cols=101 Identities=13% Similarity=0.023 Sum_probs=70.4
Q ss_pred HHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHH
Q 002942 16 GLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRS 95 (863)
Q Consensus 16 all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~ 95 (863)
.+..++.+...|.|.+|...|-++-.. .|......+.-+..-|.-|...|+...|+.+|.+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~-------------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 111 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQA-------------------GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH 111 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHh-------------------cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345666777777888777766544321 1111111222233345556677889999999999
Q ss_pred HHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 96 AVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 96 A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|+.+++..+.....-.+++.+|..+..+|+++.|+.++.+
T Consensus 112 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 151 (411)
T 4a1s_A 112 DLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCER 151 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999988776666667899999999999999999987755
No 32
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=92.19 E-value=0.83 Score=49.17 Aligned_cols=125 Identities=13% Similarity=0.103 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHhHhC-----cchhhHHHHHHHHHhhhhccCCC------------------c-c
Q 002942 11 NATRCGLWWVEMLKARHQYKDAATVYFRICG-----EEPLHSAVMLEQASYCYLLSKPP------------------M-L 66 (863)
Q Consensus 11 ~A~R~all~~E~lk~~~~~~eAa~~Lir~ts-----ed~L~SALLLEQAA~c~L~~~pp------------------m-~ 66 (863)
..-+.-++.+..+-..|.|.+|-..+-++-. .|...-|..+-..|.+|...+.. . .
T Consensus 99 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence 4445666777788888999999888876542 22233444444455555443221 1 1
Q ss_pred hhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 67 HKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 67 RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
...+.-+..-|.-|...|+...|+.+|.+|+.+++..+-......+++.||..+..+|+++.|+.+|.+
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 233444556677888999999999999999999987665555667888999999999999999988755
No 33
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=92.18 E-value=0.41 Score=48.76 Aligned_cols=102 Identities=12% Similarity=-0.000 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHH
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYR 94 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~ 94 (863)
.-++.++.+-..|.|.+|...|-++-..+ |......+.-+..-|.-|...|+...|+.+|.
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 67 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-------------------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 67 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-------------------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34566778888899999888776544321 11111112222233455567788999999999
Q ss_pred HHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 95 SAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 95 ~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+|+.+++..+.....-.+++.+|..+..+|+++.|+.++..
T Consensus 68 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 108 (338)
T 3ro2_A 68 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 108 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999887766555667889999999999999999987755
No 34
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=91.94 E-value=0.91 Score=43.21 Aligned_cols=106 Identities=7% Similarity=-0.074 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHH
Q 002942 13 TRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRT 92 (863)
Q Consensus 13 ~R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRC 92 (863)
.++-...+.++...|.|.+|...+-++-. .+-. .......+.-+..-|.-|...|+...|+++
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------------~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 88 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQ---------------QAQK--SGDHTAEHRALHQVGMVERMAGNWDAARRC 88 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHT--TCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHH---------------HHHH--cCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34445555666666777766655543321 0100 001112223333445666778899999999
Q ss_pred HHHHHhhhcCCCc-cchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 93 YRSAVSVYKGSTW-SHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 93 Y~~A~~vY~~~~W-~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.+|+.+++..+- ....-.+++.+|..+..+|+++.|++++.+
T Consensus 89 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 89 FLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999987662 234556788999999999999999988765
No 35
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=91.86 E-value=0.93 Score=48.02 Aligned_cols=123 Identities=12% Similarity=0.014 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHhHhC-----cchhhHHHHHHHHHhhhhccCCC------------------cchhh
Q 002942 13 TRCGLWWVEMLKARHQYKDAATVYFRICG-----EEPLHSAVMLEQASYCYLLSKPP------------------MLHKY 69 (863)
Q Consensus 13 ~R~all~~E~lk~~~~~~eAa~~Lir~ts-----ed~L~SALLLEQAA~c~L~~~pp------------------m~RKy 69 (863)
.++-...+.++...|.|.+|-..+-++-. .+....+..+-..|.+|+..+.. .....
T Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 266 (406)
T 3sf4_A 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 266 (406)
T ss_dssp HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHH
Confidence 34555667788888999988877766432 22222333444444444443221 11112
Q ss_pred HhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 70 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 70 AfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+.-+..-|.-|.+.|+...|+.+|.+|+.++...+-....-.++..+|+.+..+|+++.|+.++.+
T Consensus 267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455566688899999999999999999999887665555556788999999999999999988755
No 36
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=91.74 E-value=0.91 Score=45.13 Aligned_cols=124 Identities=13% Similarity=0.031 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHhHhC-------cchhhHHHHHHHHHhhhhccCCCc-----c-------------
Q 002942 12 ATRCGLWWVEMLKARHQYKDAATVYFRICG-------EEPLHSAVMLEQASYCYLLSKPPM-----L------------- 66 (863)
Q Consensus 12 A~R~all~~E~lk~~~~~~eAa~~Lir~ts-------ed~L~SALLLEQAA~c~L~~~ppm-----~------------- 66 (863)
-.++-...+.++...|.|.+|...+-++-. .+.-..+..+-..|.||....... +
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 345666778888889999998887766442 222234445555555555432210 1
Q ss_pred --hhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCc--cchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 67 --HKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTW--SHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 67 --RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W--~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
...+.-+..-|.-|.+.|+...|+.+|.+|+.+++...- ..-.-.+.+.+|+.+..+|+++.|+.+|.+
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 194 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKE 194 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 222333445577788999999999999999998754311 122235778899999999999999987755
No 37
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=91.68 E-value=0.55 Score=39.69 Aligned_cols=91 Identities=11% Similarity=0.105 Sum_probs=63.9
Q ss_pred HHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHHH
Q 002942 18 WWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAV 97 (863)
Q Consensus 18 l~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~ 97 (863)
..+.++...|.|.+|...+-++...+.-.. --+..-|.-|.+.|+...|+.+|.+|+
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------------~~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLDPEES-----------------------KYWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHCCCCH-----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCcCCH-----------------------HHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 345666778889888887766554332000 011233445667788999999999999
Q ss_pred hhhcCCCccchhhhHHHHHHHHHHHh-CCHHHHHHHHHH
Q 002942 98 SVYKGSTWSHIKDHVHFHIGQWYAVL-GMHDIAVAHMLE 135 (863)
Q Consensus 98 ~vY~~~~W~~~edHI~~tLGrq~~~L-g~~~~Av~h~l~ 135 (863)
..... .....+.+.+|..+..+ |+++.|+++|..
T Consensus 68 ~~~~~----~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 102 (112)
T 2kck_A 68 NVIED----EYNKDVWAAKADALRYIEGKEVEAEIAEAR 102 (112)
T ss_dssp HTSCC----TTCHHHHHHHHHHHTTCSSCSHHHHHHHHH
T ss_pred HhCcc----cchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 88654 12335788999999999 999999998866
No 38
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=91.64 E-value=4.8 Score=48.08 Aligned_cols=175 Identities=14% Similarity=0.160 Sum_probs=108.7
Q ss_pred eecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEE
Q 002942 215 CVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDIS 294 (863)
Q Consensus 215 ~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i~ 294 (863)
...|++|.|.|.++|.=.-+-.+ ++.|.+.-..-++.. .. .+.-...+++
T Consensus 527 ~~iG~df~v~l~~~N~s~~~~~v-~~~l~a~~v~YtG~~----------------~~-------------~~~~~~~~~~ 576 (731)
T 1ex0_A 527 AVLGKDFKLSITFRNNSHNRYTI-TAYLSANITFYTGVP----------------KA-------------EFKKETFDVT 576 (731)
T ss_dssp CBTTCCEEEEEEEEECSSSCEEE-EEEEEEEEECTTSCE----------------EE-------------EEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEECCCCCEEE-EEEEEEEEEeeCCcc----------------cc-------------ceeEeeEEEE
Confidence 45799999999999988876332 222222221111100 00 1222445899
Q ss_pred ECCCceEEEEEEEEeCc-------eeEEEEEEEEEEecc--ceeeEEEeecchhhhhhccccccccCCCCCceEEEEecC
Q 002942 295 LGGAETILVQLMVTPKV-------EGILKIVGVRWRLSG--SLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKS 365 (863)
Q Consensus 295 L~p~etk~V~L~v~P~~-------~G~L~I~Gv~~~L~g--~v~g~~~F~i~g~rl~~tK~kr~~~~~pd~~L~~~V~~~ 365 (863)
|+|.|++.+.+.+.+.. ...|+|..+.--=.. .+....+|.+ .
T Consensus 577 L~p~~~~~i~~~i~y~~Y~~~L~d~~~i~~~a~~~v~et~~~~~~~~di~l----------------------------~ 628 (731)
T 1ex0_A 577 LEPLSFKKEAVLIQAGEYMGQLLEQASLHFFVTARINETRDVLAKQKSTVL----------------------------T 628 (731)
T ss_dssp ECTTEEEEEEEEECHHHHTTTCCTTCEEEEEEEEEETTTCCEEEEEEEEEC----------------------------B
T ss_pred ECCCceEEEEEEECHHHHhhhccCCCEEEEEEEEEECCCCeEEEEEEEEEE----------------------------e
Confidence 99999999999988763 356666543221110 1111222222 2
Q ss_pred CCeEEEEEecCCccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCC
Q 002942 366 LPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFN 445 (863)
Q Consensus 366 ~P~L~v~~~~~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~ 445 (863)
.|-|.+.+ +.....|+-..+.++|+|.=..||++..+.+..+.....
T Consensus 629 ~P~l~I~v---~g~~~v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~------------------------------ 675 (731)
T 1ex0_A 629 IPEIIIKV---RGTQVVGSDMTVTVQFTNPLKETLRNVWVHLDGPGVTRP------------------------------ 675 (731)
T ss_dssp CCCCEEEE---EECCBTTSCEEEEEEEECCSSSCEEEEEEEEEETTTEEE------------------------------
T ss_pred CCCEEEEe---CCCcccCCeEEEEEEEECCCCCcccceEEEEECCCCCce------------------------------
Confidence 34444544 334466999999999999999999998877766633310
Q ss_pred CCCcceeecCCCcccCCCCeEEEEEEEEecCCceeEEEEEEE
Q 002942 446 KMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIY 487 (863)
Q Consensus 446 ~~~~~v~~~P~~~~L~pGes~~lPlwlra~~~G~~~l~lLfy 487 (863)
..+.+ ..|.||++.++.+-+.....|.+.|-.-|.
T Consensus 676 ----~~~~~---~~v~pg~~~~~~~~~~P~~~G~r~L~a~f~ 710 (731)
T 1ex0_A 676 ----MKKMF---REIRPNSTVQWEEVCRPWVSGHRKLIASMS 710 (731)
T ss_dssp ----EEEEE---EEECTTCEEEEEEEECCSSCEEEEEEEEEE
T ss_pred ----eeEec---CccCCCCEEEEEEEEEeccccceEEEEEEE
Confidence 01122 249999999999999999999988655443
No 39
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=91.59 E-value=1.2 Score=41.05 Aligned_cols=56 Identities=21% Similarity=0.347 Sum_probs=36.4
Q ss_pred HhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 74 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 74 VLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..-|.-|.+.|+...|+.+|.+++...... ..+.+.+|+.+..+|+++.|++++..
T Consensus 114 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 114 FRLGVALDNLGRFDEAIDSFKIALGLRPNE------GKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcCccc------hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334556667777777777777777664322 24567777777777777777766544
No 40
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=91.49 E-value=0.68 Score=41.79 Aligned_cols=90 Identities=14% Similarity=0.023 Sum_probs=62.5
Q ss_pred HHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHH
Q 002942 17 LWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSA 96 (863)
Q Consensus 17 ll~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A 96 (863)
+..+..+-..|.|.+|...|-++...++ ..+- -+..-|.-|.+.|+...|+.+|++|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~----------------------a~~~lg~~~~~~g~~~~A~~~~~~a 77 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEP-EREE----------------------AWRSLGLTQAENEKDGLAIIALNHA 77 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHH----------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHH----------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445566677888888887766665443 0111 1122344445668889999999999
Q ss_pred HhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 97 VSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 97 ~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+.+.-+. ...++.||..+..+|++++|+.+|.+
T Consensus 78 l~l~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 110 (121)
T 1hxi_A 78 RMLDPKD------IAVHAALAVSHTNEHNANAALASLRA 110 (121)
T ss_dssp HHHCTTC------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9874332 23678999999999999999988765
No 41
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=91.45 E-value=1.3 Score=38.15 Aligned_cols=109 Identities=18% Similarity=0.210 Sum_probs=67.2
Q ss_pred HHHHHHHHhccchHHHHHHHHhHhCcch----h--hHHHH------HHHHHhhhhcc---CCCcchhhHhHHHhhccchh
Q 002942 17 LWWVEMLKARHQYKDAATVYFRICGEEP----L--HSAVM------LEQASYCYLLS---KPPMLHKYGFHLVLSGDRYK 81 (863)
Q Consensus 17 ll~~E~lk~~~~~~eAa~~Lir~tsed~----L--~SALL------LEQAA~c~L~~---~ppm~RKyAfhmVLAGhRys 81 (863)
...+.++...|.+.+|-..+-++-..+. . .-|.+ .+.|-.+|-.+ .|. ...-+..-|.-|.
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR----SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC----chHHHHHHHHHHH
Confidence 3445666677888888777766543221 1 01111 11222222111 111 1223344577888
Q ss_pred cCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 82 KCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 82 kagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+.|+...|+.+|.+++...... ..+.+.+|+.+..+|+++.|+.+|.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 9999999999999999875432 24667899999999999999887754
No 42
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=91.22 E-value=0.55 Score=47.84 Aligned_cols=125 Identities=12% Similarity=0.011 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHhHhC-----cchhhHHHHHHHHHhhhhccCCC------------------cch
Q 002942 11 NATRCGLWWVEMLKARHQYKDAATVYFRICG-----EEPLHSAVMLEQASYCYLLSKPP------------------MLH 67 (863)
Q Consensus 11 ~A~R~all~~E~lk~~~~~~eAa~~Lir~ts-----ed~L~SALLLEQAA~c~L~~~pp------------------m~R 67 (863)
...++-...+.++...|.|.+|-..+-++-. .+.-..+..+-..|.+|+..+.+ ..+
T Consensus 181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (338)
T 3ro2_A 181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 260 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchh
Confidence 3445666677778888888888777766432 12222233333334444332211 111
Q ss_pred hhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 68 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 68 KyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..+.-+..-|.-|.+.|+...|+.+|.+|+.++...+-....-.+.+.+|+.+..+|+++.|+.++.+
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 22445566788899999999999999999999877655555556888999999999999999988754
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=91.14 E-value=1.3 Score=43.93 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=41.1
Q ss_pred HHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 73 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 73 mVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+..-|.-|...|+..-|+.+|++|+.+. . ..-+++.+|..+..+|++++|+..|.+
T Consensus 121 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-~------~~~~~~~la~~~~~~g~~~~A~~~~~~ 176 (217)
T 2pl2_A 121 HLQRGLVYALLGERDKAEASLKQALALE-D------TPEIRSALAELYLSMGRLDEALAQYAK 176 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-C------CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcc-c------chHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3445667778888888888888888775 2 123567888888888888888877654
No 44
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=91.09 E-value=8.7 Score=45.60 Aligned_cols=173 Identities=12% Similarity=0.102 Sum_probs=108.2
Q ss_pred cCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEEEC
Q 002942 217 AGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLG 296 (863)
Q Consensus 217 vgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i~L~ 296 (863)
.|++|.|.+.++|.=.-+-.+ ++.|.+.-..=++... . .+.-...+++|+
T Consensus 484 ~G~df~v~v~~~N~s~~~~~v-~~~l~a~~v~YtG~~~------------------~-----------~~~~~~~~~~L~ 533 (695)
T 1g0d_A 484 FGTDFDVIVEVKNEGGRDAHA-QLTMLAMAVTYNSLRR------------------G-----------ECQRKTISVTVP 533 (695)
T ss_dssp TTCCEEEEEEEEECSSSCEEE-EEEEEEEEECTTCBCC------------------C-----------CCCEEEEEEEEC
T ss_pred CCCCEEEEEEEEECCCCCEEE-EEEEEEEEEeeCCccc------------------C-----------ceeEeeEEEEEC
Confidence 899999999999987766332 2222222211111000 0 122234589999
Q ss_pred CCceEEEEEEEEeCc-------eeEEEEEEEEEEecc---ceeeEEEeecchhhhhhccccccccCCCCCceEEEEecCC
Q 002942 297 GAETILVQLMVTPKV-------EGILKIVGVRWRLSG---SLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSL 366 (863)
Q Consensus 297 p~etk~V~L~v~P~~-------~G~L~I~Gv~~~L~g---~v~g~~~F~i~g~rl~~tK~kr~~~~~pd~~L~~~V~~~~ 366 (863)
|.+++.+.+.+.+.. .+.++|..+ -++.. .+....+|.+ ..
T Consensus 534 p~~~~~v~~~i~y~~Y~~~L~d~~~i~~~a~-~~v~et~~~~~~~~di~l----------------------------~~ 584 (695)
T 1g0d_A 534 AHKAHKEVMRLHYDDYVRCVSEHHLIRVKAL-LDAPGENGPIMTVANIPL----------------------------ST 584 (695)
T ss_dssp TTEEEEEEEEECHHHHTTTCCTTCEEEEEEE-EECCC---EEEEEEEEEC----------------------------BC
T ss_pred CCceEEEEEEECHHHHhhhcccCCeEEEEEE-EEECCCCeEEEEEEEEEE----------------------------cC
Confidence 999999999998752 356666532 22211 0111122222 23
Q ss_pred CeEEEEEecCCccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCC
Q 002942 367 PKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNK 446 (863)
Q Consensus 367 P~L~v~~~~~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~ 446 (863)
|.|.+. ++.....|+-..+.++|+|.=..||++..+.+..|.....
T Consensus 585 P~l~I~---v~g~~~v~~~l~a~vsf~NPL~~~L~~c~~~vEG~GL~~~------------------------------- 630 (695)
T 1g0d_A 585 PELLVQ---VPGKAVVWEPLTAYVSFTNPLPVPLKGGVFTLEGAGLLSA------------------------------- 630 (695)
T ss_dssp CCCEEE---CCSCEETTCCEEEEEEEECCSSSCEESCEEEEEETTTEEE-------------------------------
T ss_pred CCEEEE---eCCCcccCCeEEEEEEEECCCCCcccceEEEEECCCCCcc-------------------------------
Confidence 344444 3555667999999999999999999998887776643310
Q ss_pred CCcceeecCCCcccCCCCeEEEEEEEEecCCceeEEEEEEE
Q 002942 447 MPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIY 487 (863)
Q Consensus 447 ~~~~v~~~P~~~~L~pGes~~lPlwlra~~~G~~~l~lLfy 487 (863)
..+.++ ..|+||++.++.+-+.....|.+.|-.-|.
T Consensus 631 ---~~~~~~--~~v~Pg~~~~~~~~~~P~~~G~r~L~a~f~ 666 (695)
T 1g0d_A 631 ---TQIHVN--GAVAPSGKVSVKLSFSPMRTGVRKLLVDFD 666 (695)
T ss_dssp ---EEEECS--SEECTTCEEEEEEEECCSSCEEEEEEEEEE
T ss_pred ---eEEecC--CCcCCCCEEEEEEEEEcCCccceEEEEEEE
Confidence 112221 349999999999999999999988654443
No 45
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=91.08 E-value=1.8 Score=39.23 Aligned_cols=93 Identities=11% Similarity=0.106 Sum_probs=63.2
Q ss_pred HHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhh
Q 002942 20 VEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSV 99 (863)
Q Consensus 20 ~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~v 99 (863)
+..+-..|.|.+|-..+-++-..++ ..+..+- --|.-|.+.|+...|+.+|.+|+.+
T Consensus 15 G~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~----------------------nlg~~~~~~~~~~~A~~~~~~al~~ 71 (127)
T 4gcn_A 15 GNAAYKQKDFEKAHVHYDKAIELDP-SNITFYN----------------------NKAAVYFEEKKFAECVQFCEKAVEV 71 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH----------------------HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHH----------------------hHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4455667888888887766554333 0111111 2244556788899999999999998
Q ss_pred hcCCCccc-hhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 100 YKGSTWSH-IKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 100 Y~~~~W~~-~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
........ ..-.+++.+|..+..+|+++.|++.|-+
T Consensus 72 ~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 72 GRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 76432211 1224788899999999999999988754
No 46
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=90.96 E-value=1.6 Score=36.94 Aligned_cols=93 Identities=13% Similarity=-0.043 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHH
Q 002942 14 RCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTY 93 (863)
Q Consensus 14 R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY 93 (863)
..-+..+.++-..|.|.+|...|-++-..++- .+..+- .-|.-|.+.|+...|+.+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~----------------------~~a~~~~~~~~~~~A~~~~ 61 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYS----------------------NRSAAYAKKGDYQKAYEDG 61 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH----------------------HHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHH----------------------HHHHHHHhhccHHHHHHHH
Confidence 34455667777888899888877665543320 011111 1233344567889999999
Q ss_pred HHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 94 RSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 94 ~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.+|+..+... ..+.+.+|..+..+|+++.|++++..
T Consensus 62 ~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~ 97 (118)
T 1elw_A 62 CKTVDLKPDW------GKGYSRKAAALEFLNRFEEAKRTYEE 97 (118)
T ss_dssp HHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCccc------HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999986432 35778999999999999999988865
No 47
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=90.93 E-value=0.57 Score=50.35 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=51.4
Q ss_pred HhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 70 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 70 AfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+.-+..-|.-|...|+...|+.+|.+|+.++...+-....-.+++.+|+.+..+|++++|+.+|.+
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 334555677788899999999999999998877554444456788899999999999999877654
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=90.89 E-value=1.6 Score=43.23 Aligned_cols=54 Identities=7% Similarity=-0.077 Sum_probs=27.1
Q ss_pred hccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 76 SGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 76 AGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
-|.-|.+.|+...|+.+|.+|+...... ..+.+.+|+.+..+|+++.|+..+..
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 200 (252)
T 2ho1_A 147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQ------PSVALEMADLLYKEREYVPARQYYDL 200 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444555555555555555555543221 22345555555555555555555433
No 49
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=90.79 E-value=0.91 Score=41.33 Aligned_cols=87 Identities=9% Similarity=0.066 Sum_probs=60.1
Q ss_pred HHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhh
Q 002942 20 VEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSV 99 (863)
Q Consensus 20 ~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~v 99 (863)
+-.+-..|.|.+|-..|-++-..++ ..+.++-.- |.-|.+.|+...|+.+|.+|+.+
T Consensus 20 G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~----------------------~~~~~~~~~~~~A~~~~~~al~~ 76 (126)
T 4gco_A 20 GNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNR----------------------AACLTKLMEFQRALDDCDTCIRL 76 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH----------------------HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH----------------------hhHHHhhccHHHHHHHHHHHHHh
Confidence 3344556788888887766654443 112222223 44455778899999999999987
Q ss_pred hcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 100 YKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 100 Y~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
-... -..++.+|..+..+|++++|++.|..
T Consensus 77 ~p~~------~~a~~~lg~~~~~~~~~~~A~~~~~~ 106 (126)
T 4gco_A 77 DSKF------IKGYIRKAACLVAMREWSKAQRAYED 106 (126)
T ss_dssp CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhh------hHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3321 23678999999999999999988755
No 50
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=90.66 E-value=1.6 Score=44.08 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=36.5
Q ss_pred HhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHh----------CCHHHHHHHHHH
Q 002942 74 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVL----------GMHDIAVAHMLE 135 (863)
Q Consensus 74 VLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~L----------g~~~~Av~h~l~ 135 (863)
...|.-|.+.|+..-|+.+|.+++..|-+..+ .....+.+|+.+..+ |++++|++++..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~ 220 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPW---ADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYER 220 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT---HHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHH
Confidence 34466677777777777777777776654332 233556666666655 666777666543
No 51
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=90.60 E-value=1.8 Score=41.06 Aligned_cols=68 Identities=9% Similarity=-0.087 Sum_probs=55.2
Q ss_pred hhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 68 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 68 KyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..+.-+..-|.-|...|+...|+++|.+|+.+++..+.....-.....+|..+..+|+++.|++++.+
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 34444555677788889999999999999999887766555556778999999999999999987755
No 52
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=90.48 E-value=0.83 Score=49.14 Aligned_cols=105 Identities=20% Similarity=0.149 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHH
Q 002942 14 RCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTY 93 (863)
Q Consensus 14 R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY 93 (863)
++-...+.++...|.|.+|-..+-++-.. +- +.+..+..+.-+.--|.-|.+.|+...|+++|
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------~~--~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 247 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSM---------------AE--AEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF 247 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---------------HH--HcCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44455566666667777666655443210 00 01112222333344566677889999999999
Q ss_pred HHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 94 RSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 94 ~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.+|+.+++..+-..-.-...+.||+.+..+|+++.|+.++.+
T Consensus 248 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 289 (383)
T 3ulq_A 248 KRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289 (383)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999987654233356789999999999999999987755
No 53
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=90.41 E-value=1.5 Score=44.92 Aligned_cols=65 Identities=12% Similarity=-0.023 Sum_probs=43.7
Q ss_pred hHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccch---hhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 71 FHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHI---KDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 71 fhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~---edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.-+..-|.-|.+.|+...|+.+|.+|+..+...+-..- ...+++.+|..+..+|++++|+.++.+
T Consensus 194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (330)
T 3hym_B 194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ 261 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 33445566777778888888888888877755332221 124677788888888888888877654
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=90.01 E-value=2.1 Score=41.00 Aligned_cols=117 Identities=10% Similarity=-0.011 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCC-c----c-------hhhHhHHHhhccchh
Q 002942 14 RCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPP-M----L-------HKYGFHLVLSGDRYK 81 (863)
Q Consensus 14 R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~pp-m----~-------RKyAfhmVLAGhRys 81 (863)
++-+..+.++...|.|.+|...|-++-..++ ..+..+-..|.||...+.. . + ...+.-+..-|.-|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4455667778888899988887776554322 0011112222222221110 0 0 011223344566777
Q ss_pred cC-CCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 82 KC-DQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 82 ka-gqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+. |+...|+.+|.+++. .... .-...+++.+|+.+..+|+++.|+.+|.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~--~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 138 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALA--DPTY--PTPYIANLNKGICSAKQGQFGLAEAYLKR 138 (225)
T ss_dssp TTTCCHHHHHHHHHHHHT--STTC--SCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHc--CcCC--cchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88 999999999999987 1111 11235678889999999999999887755
No 55
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=89.92 E-value=0.78 Score=40.60 Aligned_cols=55 Identities=13% Similarity=0.167 Sum_probs=45.6
Q ss_pred hhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 75 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 75 LAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.-|.-|.+.|+...|+.+|.+|+..+-+. ..+++.+|..+..+|++++|+..|.+
T Consensus 32 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 86 (117)
T 3k9i_A 32 GLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYAMVLYNLGRYEQGVELLLK 86 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33555667889999999999999986554 35788999999999999999988765
No 56
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=89.90 E-value=1.4 Score=45.06 Aligned_cols=119 Identities=13% Similarity=0.068 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCc------------chhhHhHHHhhccchh
Q 002942 14 RCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPM------------LHKYGFHLVLSGDRYK 81 (863)
Q Consensus 14 R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm------------~RKyAfhmVLAGhRys 81 (863)
++-...+.++...|.+.+|...+-++-..++ ..+..+-..|.++...+... ......-+..-|.-|.
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3445566777788888888887776553222 00111112222222211100 0011222344567788
Q ss_pred cCCCcHHHHHHHHHHHhhhcCC------CccchhhhHHHHHHHHHHHhCCHHHHHHHH
Q 002942 82 KCDQINHAIRTYRSAVSVYKGS------TWSHIKDHVHFHIGQWYAVLGMHDIAVAHM 133 (863)
Q Consensus 82 kagqr~hAlRCY~~A~~vY~~~------~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~ 133 (863)
+.|+...|+.+|.+|+...... +|......+.+.+|+.+..+|+.+.|.+.+
T Consensus 252 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 8888888888888888887652 233334557778888888888888887665
No 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=89.88 E-value=1.3 Score=43.72 Aligned_cols=119 Identities=12% Similarity=-0.035 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCc------------chhhHhHHHhhccc
Q 002942 12 ATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPM------------LHKYGFHLVLSGDR 79 (863)
Q Consensus 12 A~R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm------------~RKyAfhmVLAGhR 79 (863)
..++-+..+.++...|.|.+|-..|-++-..+. ..+..+-..|.+|+..+... ....+.-+..-|.-
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 356667777888889999998888877654332 01112222233222221100 01122333445677
Q ss_pred hhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 80 YKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 80 yskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.+.|+...|+++|.+++. .+ -..-...+.+.+|..+..+|+++.|+++|.+
T Consensus 115 ~~~~g~~~~A~~~~~~~~~--~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ--DT--LYPERSRVFENLGLVSLQMKKPAQAKEYFEK 166 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT--CT--TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHh--Cc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8889999999999999987 11 1112335678899999999999999988765
No 58
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=89.82 E-value=1.5 Score=44.94 Aligned_cols=113 Identities=14% Similarity=0.082 Sum_probs=74.8
Q ss_pred HHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCC---------------------cchhhHhHHH
Q 002942 16 GLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPP---------------------MLHKYGFHLV 74 (863)
Q Consensus 16 all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~pp---------------------m~RKyAfhmV 74 (863)
.+..+.++...|.+.+|...|-++-..++- .+..+-..|.+++..+.. .....+.-+.
T Consensus 162 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (330)
T 3hym_B 162 MLYIGLEYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHH
Confidence 344667777888888888877776654320 111122222222222110 0022233445
Q ss_pred hhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 75 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 75 LAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.-|.-|.+.|+...|+.+|.+|+...... ..+.+.+|+.+..+|++++|+++|.+
T Consensus 241 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 241 NLGHVCRKLKKYAEALDYHRQALVLIPQN------ASTYSAIGYIHSLMGNFENAVDYFHT 295 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhCccc------hHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 66778999999999999999999986542 34778999999999999999999855
No 59
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=89.80 E-value=3 Score=37.96 Aligned_cols=94 Identities=13% Similarity=0.013 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHH
Q 002942 13 TRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRT 92 (863)
Q Consensus 13 ~R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRC 92 (863)
...-+..+.++-..|.|.+|...|-++-..+.- .+ .-+..-|.-|.+.|+...|+.+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~----------------------~~~~~~a~~~~~~~~~~~A~~~ 69 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NA----------------------IYYGNRSLAYLRTECYGYALGD 69 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CH----------------------HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-Ch----------------------HHHHHHHHHHHHcCCHHHHHHH
Confidence 344455566777788898888877665543320 01 1122234445566778889999
Q ss_pred HHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 93 YRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 93 Y~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.+|+..+... -...+.+|..+..+|+++.|+.+|.+
T Consensus 70 ~~~a~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~ 106 (166)
T 1a17_A 70 ATRAIELDKKY------IKGYYRRAASNMALGKFRAALRDYET 106 (166)
T ss_dssp HHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCccc------HHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999876432 23677888889999999999887755
No 60
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=89.68 E-value=1.2 Score=44.25 Aligned_cols=111 Identities=23% Similarity=0.197 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcch-hhHH-----HHH------HHHHhhhhc---cCCCcchhhHhHHHhhccc
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSA-----VML------EQASYCYLL---SKPPMLHKYGFHLVLSGDR 79 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~-L~SA-----LLL------EQAA~c~L~---~~ppm~RKyAfhmVLAGhR 79 (863)
+-+..+.++...|.|.+|...|-++...++ ...| .++ +.|-.+|-+ ..|. ++--...-|.-
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~ 82 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR----YLGGYMVLSEA 82 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHH
Confidence 344566777888888888888887766543 1111 111 122222221 1221 11122233444
Q ss_pred hhcC-----------CCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 80 YKKC-----------DQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 80 yska-----------gqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.+. |+..-|+.+|++|+.+.-+. .-+++.+|..+..+|++++|++.|.+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~ 143 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY------APLHLQRGLVYALLGERDKAEASLKQ 143 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5555 88999999999999875331 24678899999999999999988865
No 61
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=89.65 E-value=2 Score=39.53 Aligned_cols=116 Identities=12% Similarity=0.033 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCc-----ch-------hhHhHHHhhccch
Q 002942 13 TRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPM-----LH-------KYGFHLVLSGDRY 80 (863)
Q Consensus 13 ~R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm-----~R-------KyAfhmVLAGhRy 80 (863)
.++-+..+.++...|.|.+|-..|-++-..+. ..+..+-..|.++...+... ++ ..+.-+..-|.-|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 44555667778888999999888877665432 01122223333333222100 00 1122234446677
Q ss_pred hcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 81 KKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 81 skagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.+.|+...|+.+|.+++...... ..+.+.+|+.+..+|+++.|+..+..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPIN------FNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHh------HHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 78888999999999998875432 24678889999999999999887755
No 62
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=89.55 E-value=1.2 Score=40.68 Aligned_cols=64 Identities=14% Similarity=0.015 Sum_probs=49.7
Q ss_pred EEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcccCCCCeE
Q 002942 387 HLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPL 466 (863)
Q Consensus 387 ~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~~~~L~pGes~ 466 (863)
...+.|+|.+..++.. +|+++.|+.+++. |.-+.|+||++.
T Consensus 18 ~~~l~L~N~t~~~vaF-KVKtT~p~~y~Vr--------------------------------------P~~G~I~P~~~~ 58 (109)
T 1row_A 18 SSTHKLVNGGAEKIVF-KIKSSNNNEYRIA--------------------------------------PVFGFVDPSGSK 58 (109)
T ss_dssp EEEEEEEECSSSCEEE-EEEESCSSSEEEE--------------------------------------CSEEEECTTEEE
T ss_pred eEEEEEEcCCCCeEEE-EEEeCCCCceEEc--------------------------------------CCceEECCCCeE
Confidence 5899999999988854 8999999766542 224679999999
Q ss_pred EEEEEEEecCCceeEEEEEEEEeeC
Q 002942 467 LWPLWYRAAVPGKISLSITIYYEMG 491 (863)
Q Consensus 467 ~lPlwlra~~~G~~~l~lLfyYe~~ 491 (863)
++-||+++..+ ..=+||++|-..
T Consensus 59 ~i~I~~q~~~~--~~dKflvq~~~~ 81 (109)
T 1row_A 59 DVVITRTAGAP--KEDKLVVHFASA 81 (109)
T ss_dssp EEEEEECSCCC--EEEEEEEEEEEC
T ss_pred EEEEEeCCCCC--CCCEEEEEEEEC
Confidence 99999998533 344788888664
No 63
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=89.52 E-value=1.4 Score=42.95 Aligned_cols=53 Identities=25% Similarity=0.320 Sum_probs=28.1
Q ss_pred hhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHH
Q 002942 75 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHM 133 (863)
Q Consensus 75 LAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~ 133 (863)
.-|.-|.+.|+...|+.+|.+|+...... ..+.+.+|..+..+|+++.|++.|
T Consensus 130 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 130 MLGTVLVKLEQPKLALPYLQRAVELNEND------TEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33455556666666666666666554321 124455555555555555555444
No 64
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=89.42 E-value=1.2 Score=44.24 Aligned_cols=119 Identities=11% Similarity=0.099 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHhHhCcch--hhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHH
Q 002942 13 TRCGLWWVEMLKARHQYKDAATVYFRICGEEP--LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAI 90 (863)
Q Consensus 13 ~R~all~~E~lk~~~~~~eAa~~Lir~tsed~--L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAl 90 (863)
..+-+..+.++-..|.|.+|...|-++....+ -.....+-..|.|+....+..+.. +...|..+...|+..-|+
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~A~ 116 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQG----FFGVDRSDRDPQQARAAF 116 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC------------------CCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhh----hhccchhhcCcHHHHHHH
Confidence 34445555666666666666666655443211 111111222233333222221111 122345555678899999
Q ss_pred HHHHHHHhhhcCCCccc-hh----------hhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 91 RTYRSAVSVYKGSTWSH-IK----------DHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 91 RCY~~A~~vY~~~~W~~-~e----------dHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.+|++++..|-+..+.. +. ...++.+|+.++..|+++.|+..|-.
T Consensus 117 ~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 172 (225)
T 2yhc_A 117 SDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEG 172 (225)
T ss_dssp HHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99999999998776532 11 11236889999999999999987754
No 65
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=89.09 E-value=1.1 Score=53.46 Aligned_cols=87 Identities=16% Similarity=0.210 Sum_probs=57.6
Q ss_pred eeecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 002942 214 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 293 (863)
Q Consensus 214 ~~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i 293 (863)
.+++|+++.|+|.|+|||.+||. |..|..++..- ..+ ....-=
T Consensus 639 ~~~v~~~l~v~vsf~NPL~~~L~--~c~~~vEG~GL---------------------~~~--------------~~~~~~ 681 (731)
T 1ex0_A 639 TQVVGSDMTVTVQFTNPLKETLR--NVWVHLDGPGV---------------------TRP--------------MKKMFR 681 (731)
T ss_dssp CCBTTSCEEEEEEEECCSSSCEE--EEEEEEEETTT---------------------EEE--------------EEEEEE
T ss_pred CcccCCeEEEEEEEECCCCCccc--ceEEEEECCCC---------------------Cce--------------eeEecC
Confidence 35789999999999999988765 55554443311 000 001112
Q ss_pred EECCCceEEEEEEEEeCceeEEEEE-EEEEEeccceeeEEEeecc
Q 002942 294 SLGGAETILVQLMVTPKVEGILKIV-GVRWRLSGSLVGVYNFESN 337 (863)
Q Consensus 294 ~L~p~etk~V~L~v~P~~~G~L~I~-Gv~~~L~g~v~g~~~F~i~ 337 (863)
.++|+++-.+++.++|.+.|.=+|. .+.-+-...|.|+..+.+.
T Consensus 682 ~v~pg~~~~~~~~~~P~~~G~r~L~a~f~s~~l~~v~G~~~v~V~ 726 (731)
T 1ex0_A 682 EIRPNSTVQWEEVCRPWVSGHRKLIASMSSDSLRHVYGELDVQIQ 726 (731)
T ss_dssp EECTTCEEEEEEEECCSSCEEEEEEEEEECSSCCCEEEEEEEEEB
T ss_pred ccCCCCEEEEEEEEEeccccceEEEEEEECCcccCcEeEEEEEEc
Confidence 4999999999999999999987763 2222223447777666653
No 66
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=89.06 E-value=0.49 Score=56.18 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=56.4
Q ss_pred eeecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 002942 214 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 293 (863)
Q Consensus 214 ~~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i 293 (863)
.+++|+++.|+|.|+|||.+||. |..|..++..- ..+. -...+
T Consensus 596 ~~~v~~~~~v~v~f~NPL~~~L~--~c~~~vEG~GL---------------------~~~~--------------~~~~~ 638 (687)
T 2q3z_A 596 EPKQKRKLVAEVSLQNPLPVALE--GCTFTVEGAGL---------------------TEEQ--------------KTVEI 638 (687)
T ss_dssp CCSSSSCEEEEEEEECCSSSCBC--SEEEEEECTTT---------------------CSSC--------------EEEEE
T ss_pred CcccCCeEEEEEEEECCCCCccc--ceEEEEECCCC---------------------CCCc--------------eEEec
Confidence 35689999999999999988765 54444433211 0010 11244
Q ss_pred --EECCCceEEEEEEEEeCceeEEEEE-EEEEEeccceeeEEEeec
Q 002942 294 --SLGGAETILVQLMVTPKVEGILKIV-GVRWRLSGSLVGVYNFES 336 (863)
Q Consensus 294 --~L~p~etk~V~L~v~P~~~G~L~I~-Gv~~~L~g~v~g~~~F~i 336 (863)
.++|+++-++.+.++|.+.|.=+|. .+.-+-...|.|+..+.+
T Consensus 639 ~~~v~pg~~~~~~~~~~P~~~G~~~L~a~f~s~~l~~v~G~~~v~V 684 (687)
T 2q3z_A 639 PDPVEAGEEVKVRMDLVPLHMGLHKLVVNFESDKLKAVKGFRNVII 684 (687)
T ss_dssp CSCBCTTCEEEEEEEECCCSSSCEEEEEEEECSSSCCEEEEEEEC-
T ss_pred CCCcCCCCEEEEEEEEEeccccceEEEEEEEcCcccCcEeEEEEEE
Confidence 5899999999999999999987763 222222344666666554
No 67
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=89.01 E-value=1.2 Score=41.35 Aligned_cols=64 Identities=16% Similarity=0.086 Sum_probs=49.7
Q ss_pred EEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcccCCCCeE
Q 002942 387 HLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPL 466 (863)
Q Consensus 387 ~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~~~~L~pGes~ 466 (863)
...+.|+|.+..++.. +|+++.|+.+++. |.-+.|+||++.
T Consensus 26 ~~~l~L~N~t~~~vAF-KVKtT~p~~YrVr--------------------------------------P~~G~I~Pg~~~ 66 (116)
T 1m1s_A 26 NSTHNITSESDSRLAF-KVKSSNNEHYRVR--------------------------------------PVYGFVDAKGKS 66 (116)
T ss_dssp EEEEEEEECSSSEEEE-EEEESCTTTEEEE--------------------------------------CSEEEECTTCEE
T ss_pred EEEEEEECCCCCeEEE-EEEecCCCceEEc--------------------------------------CCceEECCCCeE
Confidence 7899999999988854 8999998666542 224569999999
Q ss_pred EEEEEEEecCCceeEEEEEEEEeeC
Q 002942 467 LWPLWYRAAVPGKISLSITIYYEMG 491 (863)
Q Consensus 467 ~lPlwlra~~~G~~~l~lLfyYe~~ 491 (863)
.+-||+++..+. .=+||++|-..
T Consensus 67 ~I~I~~q~~~~k--~DKflVq~~~~ 89 (116)
T 1m1s_A 67 KLDINRLPGPPK--EDKIVIQYAEV 89 (116)
T ss_dssp EEEEEECSCCSC--EEEEEEEEEEE
T ss_pred EEEEEeCCCCCC--CCEEEEEEEEC
Confidence 999999975333 44888888654
No 68
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=88.91 E-value=3.7 Score=39.19 Aligned_cols=114 Identities=11% Similarity=-0.024 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhcc-C--------------CCcchhhHhHHHhhccc
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLS-K--------------PPMLHKYGFHLVLSGDR 79 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~-~--------------ppm~RKyAfhmVLAGhR 79 (863)
+-...+.++...|.+.+|...+-++...++ ..+..+-..|.|+... + .|.....+.-+..-|.-
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 122 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC 122 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHH
Confidence 344566778888999999888877654322 0011111222222222 1 11111223444556778
Q ss_pred hhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 80 YKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 80 yskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.+.|+...|+.+|.+++...... ....+.+|+.+..+|+++.|+..+..
T Consensus 123 ~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 123 SAKQGQFGLAEAYLKRSLAAQPQF------PPAFKELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC------chHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 889999999999999999876542 34678999999999999999988755
No 69
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=88.89 E-value=0.52 Score=42.35 Aligned_cols=63 Identities=13% Similarity=0.045 Sum_probs=45.6
Q ss_pred HHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 73 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 73 mVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+..-|.-|...|+...|+.+|.+|+..++..+.....-.+.+.+|..+..+|+++.|++++..
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 74 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344455566677788888888888888876555544446777888888888888888877654
No 70
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=88.79 E-value=1.6 Score=46.08 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=33.2
Q ss_pred ccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 77 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 77 GhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.-|.+.|+...|+.+|.+|+...... ....+++.+|..+..+|+++.|+..|.+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 238 (365)
T 4eqf_A 184 SKSPVDSSVLEGVKELYLEAAHQNGDM----IDPDLQTGLGVLFHLSGEFNRAIDAFNA 238 (365)
T ss_dssp -----CCHHHHHHHHHHHHHHHHSCSS----CCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCcCc----cCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555666666666666666666654331 1234677888888888888888877654
No 71
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=88.64 E-value=0.8 Score=42.87 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=37.3
Q ss_pred HhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 74 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 74 VLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..-|.-|.+.|+...|+.||++|+.+.-.. -..++.||..+..+|+.++|++.+++
T Consensus 69 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~aa~~~~~ 124 (150)
T 4ga2_A 69 RFLGLLYELEENTDKAVECYRRSVELNPTQ------KDLVLKIAELLCKNDVTDGRAKYWVE 124 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 334556667777888888888888763321 23567778888888877777666543
No 72
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=88.42 E-value=2 Score=44.31 Aligned_cols=57 Identities=11% Similarity=0.000 Sum_probs=39.1
Q ss_pred ccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 77 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 77 GhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.-|.+.|+...|+.+|.+++.......+ ....+++.+|..+..+|+++.|+..+-.
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTEPSVAE--YTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSSHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchH--HHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 66677777777788888877776644221 2223466778888888888888877654
No 73
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=88.29 E-value=2.2 Score=42.43 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=38.9
Q ss_pred hhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 75 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 75 LAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.-|.-|.+.|+...|+.+|.+|+...... ..+++.+|..+..+|+++.|+..|..
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 136 (275)
T 1xnf_A 82 YLGIYLTQAGNFDAAYEAFDSVLELDPTY------NYAHLNRGIALYYGGRDKLAQDDLLA 136 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCccc------cHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34555667778888888888888775443 24667778888888888888776644
No 74
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=88.21 E-value=1.8 Score=42.93 Aligned_cols=68 Identities=9% Similarity=-0.104 Sum_probs=53.2
Q ss_pred hhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCc--cchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 68 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTW--SHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 68 KyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W--~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..+.-+..-|.-|...|+...|+.+|.+|+..++...- ..-.-.+++.+|..+..+|+++.|+.+|.+
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 152 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRR 152 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555666688899999999999999999999864321 122345788999999999999999987755
No 75
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=88.10 E-value=2.2 Score=41.59 Aligned_cols=117 Identities=12% Similarity=0.060 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCc------------chhhHhHHHhhccc
Q 002942 12 ATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPM------------LHKYGFHLVLSGDR 79 (863)
Q Consensus 12 A~R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm------------~RKyAfhmVLAGhR 79 (863)
+.+.-+..+.++...|.|.+|...|-++-..+. ..+..+-..|.|+...+... ....+.-+..-|.-
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 334444455566666677766666665544322 01111222222222221100 01122333444666
Q ss_pred hhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 80 YKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 80 yskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.+.|+...|+.+|.+++..+... ..+.+.+|..+..+|+++.|+..+.+
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMEN------GDLFYMLGTVLVKLEQPKLALPYLQR 150 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCS------HHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 778899999999999999886543 34678899999999999999877654
No 76
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=88.10 E-value=2.5 Score=41.45 Aligned_cols=114 Identities=13% Similarity=0.011 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHhHhCcc--h--hhHHHHHHHHHhhhhcc--CCCcchhhHhHHHhhccchhcCCCc
Q 002942 13 TRCGLWWVEMLKARHQYKDAATVYFRICGEE--P--LHSAVMLEQASYCYLLS--KPPMLHKYGFHLVLSGDRYKKCDQI 86 (863)
Q Consensus 13 ~R~all~~E~lk~~~~~~eAa~~Lir~tsed--~--L~SALLLEQAA~c~L~~--~ppm~RKyAfhmVLAGhRyskagqr 86 (863)
..+-...+.++...|.|.+|-..|-++-..+ . +...=-.++|..+|-.+ ..| ..+.-+..-|.-|.+.|+.
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNP---EKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCc---chHHHHHHHHHHHHHhcCH
Confidence 4556677888889999999998888766422 1 22222233443333221 122 2344455667788899999
Q ss_pred HHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 87 NHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 87 ~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..|+.+|.+|+...... ..+++.+|..+..+|+++.|+++|..
T Consensus 156 ~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999876442 35778899999999999999988755
No 77
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=88.00 E-value=3.1 Score=38.63 Aligned_cols=53 Identities=11% Similarity=-0.002 Sum_probs=42.3
Q ss_pred ccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 77 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 77 GhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.-|.+.|+...|+.+|.+|+.+--. + -..++.+|..+..+|++++|+..|..
T Consensus 70 a~~~~~~~~~~~A~~~~~~al~~~p~--~----~~a~~~~g~~~~~~g~~~~A~~~~~~ 122 (162)
T 3rkv_A 70 SQCYLNIGDLHEAEETSSEVLKREET--N----EKALFRRAKARIAAWKLDEAEEDLKL 122 (162)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCc--c----hHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 34455678889999999999998322 1 24689999999999999999988855
No 78
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=87.89 E-value=2.2 Score=42.64 Aligned_cols=113 Identities=19% Similarity=0.174 Sum_probs=74.0
Q ss_pred HHHHHHHHhccchHHHHHHHHhHhCcch------hhHHHH------HHHHHhhhhcc--CCCcchhhHhHHHhhccchhc
Q 002942 17 LWWVEMLKARHQYKDAATVYFRICGEEP------LHSAVM------LEQASYCYLLS--KPPMLHKYGFHLVLSGDRYKK 82 (863)
Q Consensus 17 ll~~E~lk~~~~~~eAa~~Lir~tsed~------L~SALL------LEQAA~c~L~~--~ppm~RKyAfhmVLAGhRysk 82 (863)
+..+.++-..|.|.+|-..|-++-..++ ..-|.+ .+.|-.+|-.+ .++...-.+.-+..-|.-|.+
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 4567778888899988888777654321 111111 13333333221 121111113335667788899
Q ss_pred CCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 83 CDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 83 agqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.|+...|+.+|.+|+....... .+.+.+|..+..+|+++.|+.+|.+
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTTRL------DMYGQIGSYFYNKGNFPLAIQYMEK 133 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCT------HHHHHHHHHHHHTTCHHHHHHHHGG
T ss_pred cccHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999999999765533 4778899999999999999988855
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=87.88 E-value=1.6 Score=52.56 Aligned_cols=111 Identities=15% Similarity=0.188 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcch-hhH-----HHH------HHHHHhhhhcc---CCCcchhhHhHHHhhccc
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEP-LHS-----AVM------LEQASYCYLLS---KPPMLHKYGFHLVLSGDR 79 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~-L~S-----ALL------LEQAA~c~L~~---~ppm~RKyAfhmVLAGhR 79 (863)
+-...+.++..+|.|.+|...|-++-..++ ... |.+ +++|..+|-++ +| +++--+..-|.-
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P----~~~~a~~nLg~~ 86 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP----TFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHH
Confidence 345668889999999999998888664332 111 111 13344444332 22 234444555888
Q ss_pred hhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 80 YKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 80 yskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.+.|+...|+.||++|+++--+. --.++.||..+..+|++++|+++|.+
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~------~~a~~~Lg~~~~~~g~~~eAi~~~~~ 136 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAF------ADAHSNLASIHKDSGNIPEAIASYRT 136 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999873221 23578899999999999999987755
No 80
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=87.84 E-value=0.69 Score=43.31 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=45.1
Q ss_pred hccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 76 SGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 76 AGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
=|.-|.+.|+...|+.+|.+|+.+--.. -..++.+|..+..+|+++.|+.+|.+
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~~~~~A~~~~~~ 90 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQERD------PKAHRFLGLLYELEENTDKAVECYRR 90 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 3566778899999999999999884332 24788999999999999999998866
No 81
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=87.81 E-value=4 Score=41.06 Aligned_cols=121 Identities=10% Similarity=0.051 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcch--hhHHHHHHHHHhhhhccCC---------------CcchhhHhHHHhhc
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEP--LHSAVMLEQASYCYLLSKP---------------PMLHKYGFHLVLSG 77 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~--L~SALLLEQAA~c~L~~~p---------------pm~RKyAfhmVLAG 77 (863)
..+..+..+-..|.|.+|...|-++-..++ -..+-.+-..|.||+..+. |.-..+..-+..-|
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg 96 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERA 96 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHH
Confidence 345556666677778887777777664322 1112222333333333221 11112222233445
Q ss_pred cchhc--------CCCcHHHHHHHHHHHhhhcCCCccc-hhhhH----------HHHHHHHHHHhCCHHHHHHHHHH
Q 002942 78 DRYKK--------CDQINHAIRTYRSAVSVYKGSTWSH-IKDHV----------HFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 78 hRysk--------agqr~hAlRCY~~A~~vY~~~~W~~-~edHI----------~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.-|.+ .|+...|+.+|.+++..|-+..... +...+ ++.+|+.+..+|+++.|+.+|..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 97 MCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555 8999999999999999987654321 11111 38899999999999999988755
No 82
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=87.56 E-value=2.2 Score=45.72 Aligned_cols=105 Identities=14% Similarity=-0.027 Sum_probs=66.2
Q ss_pred HHHHHHHHHhccchHHHHHHHHhHhCcch-hhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHH
Q 002942 16 GLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYR 94 (863)
Q Consensus 16 all~~E~lk~~~~~~eAa~~Lir~tsed~-L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~ 94 (863)
-...+.++-..|.|.+|...|-++-..+. ... +-.|++.. + -...+.-+..-|.-|.+.|+...|+.+|.
T Consensus 150 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-~~~~~~~~--~------~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 220 (336)
T 1p5q_A 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESS-FSNEEAQK--A------QALRLASHLNLAMCHLKLQAFSAAIESCN 220 (336)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC-CCSHHHHH--H------HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc-CChHHHHH--H------HHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455667778899999888877654222 100 00000000 0 00001122233555667889999999999
Q ss_pred HHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 95 SAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 95 ~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+|+.+.... -..++.+|..+..+|++++|+..|.+
T Consensus 221 ~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~ 255 (336)
T 1p5q_A 221 KALELDSNN------EKGLSRRGEAHLAVNDFELARADFQK 255 (336)
T ss_dssp HHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999986442 24678999999999999999988865
No 83
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=87.56 E-value=2.3 Score=44.27 Aligned_cols=114 Identities=11% Similarity=0.021 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcch------hhHHHHH------HHHHhhhhccCCCcchhhHhHHHhhccchhc
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEP------LHSAVML------EQASYCYLLSKPPMLHKYGFHLVLSGDRYKK 82 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~------L~SALLL------EQAA~c~L~~~ppm~RKyAfhmVLAGhRysk 82 (863)
..+..+..+...|.+.+|...|-++-..++ +.-|.++ ++|..+|-+.-. .-.....+...++..+.+
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-~~p~~~~~~~~~~~~l~~ 197 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-QDQDTRYQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-GGCSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-hhcchHHHHHHHHHHHHh
Confidence 345667778888999999988888764332 1112111 344444433211 111456777788888888
Q ss_pred CCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 83 CDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 83 agqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.|....|+.+|++|+...-+. --+++.||..+...|++++|+.+|.+
T Consensus 198 ~~~~~~a~~~l~~al~~~P~~------~~~~~~la~~l~~~g~~~~A~~~l~~ 244 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAENPED------AALATQLALQLHQVGRNEEALELLFG 244 (287)
T ss_dssp HHTSCHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcccCccHHHHHHHHhcCCcc------HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 888888999999999865332 23788999999999999999988866
No 84
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=87.16 E-value=0.45 Score=40.71 Aligned_cols=95 Identities=14% Similarity=0.147 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHH
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYR 94 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~ 94 (863)
+-+..+.++...|.|.+|...+-++-..++ ..+..+ ..-|.-|.+.|+...|+.+|.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~----------------------~~lg~~~~~~g~~~~A~~~~~ 62 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGY----------------------SNKAMALIKLGEYTQAIQMCQ 62 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHH----------------------HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHH----------------------HHHHHHHHHhcCHHHHHHHHH
Confidence 334556677788888888887766554332 011111 223444556788899999999
Q ss_pred HHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHH
Q 002942 95 SAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAH 132 (863)
Q Consensus 95 ~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h 132 (863)
+|+......+-....-.+++.+|+.+..+|+.+.|+..
T Consensus 63 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 63 QGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhH
Confidence 99988765422222345677788888888877666543
No 85
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=87.13 E-value=2.6 Score=39.94 Aligned_cols=115 Identities=14% Similarity=0.026 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHhHhCcc--h-h---hHHHHH-HH-----HHhhhhcc--CCCcchhhHhHHHhhccc
Q 002942 14 RCGLWWVEMLKARHQYKDAATVYFRICGEE--P-L---HSAVML-EQ-----ASYCYLLS--KPPMLHKYGFHLVLSGDR 79 (863)
Q Consensus 14 R~all~~E~lk~~~~~~eAa~~Lir~tsed--~-L---~SALLL-EQ-----AA~c~L~~--~ppm~RKyAfhmVLAGhR 79 (863)
++-+..+.++...|.+.+|-..|-++...+ . . ...+.+ ++ |--+|-.+ ..|. ..--+..-|.-
T Consensus 41 ~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~---~~~~~~~la~~ 117 (176)
T 2r5s_A 41 DVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPD---NFELACELAVQ 117 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCC---CHHHHHHHHHH
Confidence 344556667777777877777776654432 1 1 111111 11 00111100 1111 11222333556
Q ss_pred hhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 80 YKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 80 yskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.+.|+..-|+.+|++++...-+ ..+...++.||..+..+|+.++|+.++.+
T Consensus 118 ~~~~g~~~~A~~~~~~~l~~~p~----~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 118 YNQVGRDEEALELLWNILKVNLG----AQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT----TTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcc----cChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 77778888888888877765321 11234667777777778888777776643
No 86
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=87.09 E-value=3.5 Score=40.30 Aligned_cols=57 Identities=9% Similarity=-0.085 Sum_probs=46.6
Q ss_pred HHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 73 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 73 mVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+..-|.-|.+.|+...|+.+|.+|+...... ...++.+|..+..+|+++.|+.++..
T Consensus 176 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNF------VRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH------HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4445667788999999999999999976432 35678999999999999999988754
No 87
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=87.08 E-value=3.5 Score=42.59 Aligned_cols=63 Identities=5% Similarity=0.028 Sum_probs=50.7
Q ss_pred HHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccc-hhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 73 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSH-IKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 73 mVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~-~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+..-|.-|.+.|+...|+.+|.+|+.+++..+-.. ..-.+.+.+|..+..+|+++.|+.++-+
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~k 221 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 33458889999999999999999998887544221 1226889999999999999999988755
No 88
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=87.08 E-value=2.4 Score=46.38 Aligned_cols=106 Identities=11% Similarity=-0.006 Sum_probs=64.5
Q ss_pred HHHHHHHHHhccchHHHHHHHHhHhCcch-hhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHH
Q 002942 16 GLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYR 94 (863)
Q Consensus 16 all~~E~lk~~~~~~eAa~~Lir~tsed~-L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~ 94 (863)
-...+..+-..|.|.+|...|-++-.... .....-.|.+.. .-...+--+..-|.-|.+.|+...|+.+|.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~--------~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 297 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAK--------LQPVALSCVLNIGACKLKMSDWQGAVDSCL 297 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGG--------GHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHH--------HHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 34456677777889988887766543110 000000000000 001112222233444557788899999999
Q ss_pred HHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 95 SAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 95 ~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+|+.+.... -..++.+|..+..+|++++|+++|.+
T Consensus 298 ~al~~~p~~------~~a~~~lg~~~~~~g~~~eA~~~l~~ 332 (370)
T 1ihg_A 298 EALEIDPSN------TKALYRRAQGWQGLKEYDQALADLKK 332 (370)
T ss_dssp HHHTTCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCchh------HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999875321 24678999999999999999988865
No 89
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=87.02 E-value=2.1 Score=43.65 Aligned_cols=51 Identities=14% Similarity=0.209 Sum_probs=31.5
Q ss_pred chhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 79 RYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 79 Ryskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
-|.+.|+...|+++|.+++..... ...+.+.+|..+..+|+++.|++.+..
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~ 197 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMNPN------DAQLHASLGVLYNLSNNYDSAAANLRR 197 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 355555555566666665554332 224667778888888888888776644
No 90
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=86.97 E-value=1.2 Score=38.50 Aligned_cols=57 Identities=18% Similarity=0.217 Sum_probs=46.9
Q ss_pred HHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 73 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 73 mVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+..-|.-|.+.|+...|+.+|.+|+...-... ..++.||..+..+|++++|++.|.+
T Consensus 10 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 10 RYALAQEHLKHDNASRALALFEELVETDPDYV------GTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34456677889999999999999999864432 3788999999999999999988755
No 91
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=86.90 E-value=5.3 Score=42.28 Aligned_cols=124 Identities=12% Similarity=-0.017 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHhHhC-----cchhhHHHHHHHHHhhhhccC--------------------CCc
Q 002942 11 NATRCGLWWVEMLKARHQYKDAATVYFRICG-----EEPLHSAVMLEQASYCYLLSK--------------------PPM 65 (863)
Q Consensus 11 ~A~R~all~~E~lk~~~~~~eAa~~Lir~ts-----ed~L~SALLLEQAA~c~L~~~--------------------ppm 65 (863)
...++....+.++...|.|.+|-..|-++-. .+....+..+-..|.+++... .+.
T Consensus 51 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 130 (373)
T 1hz4_A 51 SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ 130 (373)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 3556667777888888999988887766432 111111111112222222111 110
Q ss_pred chhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 66 LHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 66 ~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
....+.-+..-|.-|...|+...|.++|.+|+.+....+... .-..++.+|+.+...|+++.|..++.+
T Consensus 131 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~ 199 (373)
T 1hz4_A 131 LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNR 199 (373)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 112333344456677888999999999999999998766543 235678899999999999999887754
No 92
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=86.88 E-value=2.4 Score=41.58 Aligned_cols=120 Identities=12% Similarity=-0.004 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcch-hhHHHHHHHHHhhhhccCCCc-----ch-------hhHhHHHhhccchh
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLEQASYCYLLSKPPM-----LH-------KYGFHLVLSGDRYK 81 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~-L~SALLLEQAA~c~L~~~ppm-----~R-------KyAfhmVLAGhRys 81 (863)
+-+..+.++-..|.|.+|-..|-++-..++ --...... .|.|+...+... ++ +.+.-+..-|.-|.
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYN-CGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 344556777888999999888877654221 01111111 444444332110 01 12333455677888
Q ss_pred cCCCcHHHHHHHHHHHhhhcCCCccc-hhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 82 KCDQINHAIRTYRSAVSVYKGSTWSH-IKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 82 kagqr~hAlRCY~~A~~vY~~~~W~~-~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+.|+...|+.+|++|+..+....... ..-.+++.+|..+..+|+++.|+.+|.+
T Consensus 88 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 142 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH 142 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 99999999999999999876543110 0113578899999999999999999866
No 93
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=86.85 E-value=3.6 Score=38.55 Aligned_cols=93 Identities=10% Similarity=-0.039 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCc--HHHHHH
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQI--NHAIRT 92 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr--~hAlRC 92 (863)
+-+..+.++...|.|.+|...|-++-..++- .+ ..+.-+|--.|.+.|.. ..|+.+
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~---------------------~~~~~la~~l~~~~~~~~~~~A~~~ 103 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NA---------------------ELYAALATVLYYQASQHMTAQTRAM 103 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CH---------------------HHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CH---------------------HHHHHHHHHHHHhcCCcchHHHHHH
Confidence 3445566666777777776666554432210 01 11111221125566776 999999
Q ss_pred HHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 93 YRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 93 Y~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.+|+...... ....+.+|+.+..+|+++.|+.+|..
T Consensus 104 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 140 (177)
T 2e2e_A 104 IDKALALDSNE------ITALMLLASDAFMQANYAQAIELWQK 140 (177)
T ss_dssp HHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCc------HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 99999985432 24678899999999999999988865
No 94
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=86.75 E-value=2.4 Score=47.62 Aligned_cols=104 Identities=10% Similarity=-0.014 Sum_probs=65.2
Q ss_pred HHHHHHHHhccchHHHHHHHHhHhCcch-hhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHH
Q 002942 17 LWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRS 95 (863)
Q Consensus 17 ll~~E~lk~~~~~~eAa~~Lir~tsed~-L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~ 95 (863)
...+.++-.+|.|.+|...|-++-..+. ... +--|.... .-...+.-+..-|.-|.+.|+...|+.+|.+
T Consensus 272 ~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~-~~~~~~~~--------~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG-LSEKESKA--------SESFLLAAFLNLAMCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS-CCHHHHHH--------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhccccc-CChHHHHH--------HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3445566778889999888877654221 100 00000000 0000011122234556678889999999999
Q ss_pred HHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 96 AVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 96 A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|+.+.... -..+|.+|+.+..+|+++.|+.+|.+
T Consensus 343 al~~~p~~------~~a~~~~g~a~~~~g~~~~A~~~~~~ 376 (457)
T 1kt0_A 343 ALGLDSAN------EKGLYRRGEAQLLMNEFESAKGDFEK 376 (457)
T ss_dssp HHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcCCcc------HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99986542 24678999999999999999998866
No 95
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=86.70 E-value=1 Score=40.89 Aligned_cols=54 Identities=13% Similarity=0.010 Sum_probs=45.6
Q ss_pred hccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 76 SGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 76 AGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
-|+.|-+.|+...|+.+|.+|+.+.-.. --+++.+|..+..+|+++.|+..+..
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~p~~------~~~~~nlg~~~~~~~~~~~A~~~~~~ 67 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELDPSN------ITFYNNKAAVYFEEKKFAECVQFCEK 67 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence 4888899999999999999999985432 23677899999999999999988755
No 96
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=86.59 E-value=3 Score=43.60 Aligned_cols=119 Identities=10% Similarity=0.006 Sum_probs=64.3
Q ss_pred HHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCc-----c-------hhhHhHHHhhccchhcC
Q 002942 16 GLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPM-----L-------HKYGFHLVLSGDRYKKC 83 (863)
Q Consensus 16 all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm-----~-------RKyAfhmVLAGhRyska 83 (863)
.+..+.++...|.|.+|...|-++-..++- .+-.+-..|.|+....... + .+.+.-+..-|.-|.+.
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 145 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE 145 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 344566666777777777777666543320 0111112222222211100 0 01122233345566667
Q ss_pred CCcHHHHHHHHHHHhhhcCCCccch---------------------------------------------hhhHHHHHHH
Q 002942 84 DQINHAIRTYRSAVSVYKGSTWSHI---------------------------------------------KDHVHFHIGQ 118 (863)
Q Consensus 84 gqr~hAlRCY~~A~~vY~~~~W~~~---------------------------------------------edHI~~tLGr 118 (863)
|+...|+.+|.+++........... .-.+++.+|.
T Consensus 146 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~ 225 (368)
T 1fch_A 146 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 225 (368)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHH
Confidence 7777777777777665543222111 2356788899
Q ss_pred HHHHhCCHHHHHHHHHH
Q 002942 119 WYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 119 q~~~Lg~~~~Av~h~l~ 135 (863)
.+..+|+++.|+.+|.+
T Consensus 226 ~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 226 LFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 99999999999887755
No 97
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=86.43 E-value=1.2 Score=39.18 Aligned_cols=60 Identities=13% Similarity=-0.120 Sum_probs=50.0
Q ss_pred hccchhcCCCcHHHHHHHHHHHhhhcCCC-ccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 76 SGDRYKKCDQINHAIRTYRSAVSVYKGST-WSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 76 AGhRyskagqr~hAlRCY~~A~~vY~~~~-W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
=|..|-+.|...+|..-|++|+..+.... +..-...|+..||.-++.+|+++.|+.++.+
T Consensus 11 lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~ 71 (104)
T 2v5f_A 11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71 (104)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 36777788999999999999999986543 3445567899999999999999999988754
No 98
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=86.35 E-value=1.5 Score=37.32 Aligned_cols=56 Identities=13% Similarity=0.026 Sum_probs=47.1
Q ss_pred HhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 74 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 74 VLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..-|..|.+.|+...|+.+|.+|+...... -.+++.+|..+..+|+++.|++++.+
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~ 63 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLITAQPQN------PVGYSNKAMALIKLGEYTQAIQMCQQ 63 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 345777888999999999999999985543 34678999999999999999998866
No 99
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=86.31 E-value=1.5 Score=47.16 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=48.9
Q ss_pred hccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 76 SGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 76 AGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
-|.-|...|+...|+++|.+|+.+++..+-... -...+.||+.+..+|+++.|+.++.+
T Consensus 228 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 286 (378)
T 3q15_A 228 IANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEE 286 (378)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 466677789999999999999999885443333 67889999999999999999988765
No 100
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=86.22 E-value=5.2 Score=38.44 Aligned_cols=105 Identities=10% Similarity=0.054 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHhHhCc---ch-hhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHH
Q 002942 14 RCGLWWVEMLKARHQYKDAATVYFRICGE---EP-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHA 89 (863)
Q Consensus 14 R~all~~E~lk~~~~~~eAa~~Lir~tse---d~-L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hA 89 (863)
..-...+..+-..|.|.+|...|-++-.. +. .....+-+.... + + +.-+..-|.-|.+.|+...|
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~---------~-~-~~~~~~la~~~~~~~~~~~A 107 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN---------I-E-ISCNLNLATCYNKNKDYPKA 107 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH---------H-H-HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH---------H-H-HHHHHHHHHHHHHhcCHHHH
Confidence 33445566777788888888877765431 11 111100000000 0 0 11122335556678889999
Q ss_pred HHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 90 IRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 90 lRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+.+|.+|+...... ...++.+|..+..+|+++.|+++|.+
T Consensus 108 ~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 108 IDHASKVLKIDKNN------VKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHHHHHHHSTTC------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCccc------HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 99999999985432 34788999999999999999988855
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=86.06 E-value=4.1 Score=39.92 Aligned_cols=106 Identities=10% Similarity=-0.058 Sum_probs=72.4
Q ss_pred HHHHHHHHHhccchHHHHHHHHhHhCcch-hhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHH
Q 002942 16 GLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYR 94 (863)
Q Consensus 16 all~~E~lk~~~~~~eAa~~Lir~tsed~-L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~ 94 (863)
.+..+..+-..|.|.+|...|-++...++ -..+...... ..-.-....++. .-|.-|.+.|+...|+.+|.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-------~~~~~~~~~~~~-~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-------DKNSEISSKLAT-ELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-------CTTSHHHHHHHH-HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-------cchhhhhHHHHH-HHHHHHHHCCCHHHHHHHHH
Confidence 34456667788999999998888776654 3333333111 110001111121 24677889999999999999
Q ss_pred HHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 95 SAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 95 ~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+|+...-.. -..++.+|..+..+|++++|+..|.+
T Consensus 79 ~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~ 113 (208)
T 3urz_A 79 ELLQKAPNN------VDCLEACAEMQVCRGQEKDALRMYEK 113 (208)
T ss_dssp HHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999986432 24678999999999999999988765
No 102
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=85.89 E-value=1.2 Score=52.72 Aligned_cols=87 Identities=21% Similarity=0.233 Sum_probs=55.7
Q ss_pred eeecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 002942 214 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 293 (863)
Q Consensus 214 ~~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i 293 (863)
.+++|+++.|+|.|+|||.+||. |..|..++..- . ..+ ....-=
T Consensus 603 ~~~v~~~l~v~v~f~NPL~~~L~--~c~~~vEG~GL----~----------------~~~--------------~~~~~~ 646 (692)
T 1vjj_A 603 EARVRKPVNVQMLFSNPLDEPVR--DCVLMVEGSGL----L----------------LGN--------------LKIDVP 646 (692)
T ss_dssp CCBTTSCEEEEEEEECCSSSCBC--SEEEEEECTTT----S----------------SSC--------------EEEEEC
T ss_pred CcccCCeEEEEEEEECCCCCccc--ceEEEEECCCC----C----------------CCc--------------eEEEcC
Confidence 45789999999999999988765 55555443311 0 000 000112
Q ss_pred EECCCceEEEEEEEEeCceeEEEEE-EEEEEeccceeeEEEeec
Q 002942 294 SLGGAETILVQLMVTPKVEGILKIV-GVRWRLSGSLVGVYNFES 336 (863)
Q Consensus 294 ~L~p~etk~V~L~v~P~~~G~L~I~-Gv~~~L~g~v~g~~~F~i 336 (863)
.++|+++-.+++.++|.+.|.=++. .+.-+-...|.|...+.+
T Consensus 647 ~v~pg~~~~~~~~~~P~~~G~r~L~a~f~s~~l~~v~G~~~v~V 690 (692)
T 1vjj_A 647 TLGPKERSRVRFDILPSRSGTKQLLADFSCNKFPAIKAMLSIDV 690 (692)
T ss_dssp CBCTTCEEEEEEEECCCSCEEEEEEEEEECSSSTTEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEeccccceEEEEEEECCcccCceeEEEEEE
Confidence 3899999999999999999987753 222222234666655544
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=85.65 E-value=6.8 Score=38.70 Aligned_cols=100 Identities=8% Similarity=0.014 Sum_probs=71.8
Q ss_pred hccchHHHHHHHHhHhCcch--hhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcC
Q 002942 25 ARHQYKDAATVYFRICGEEP--LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG 102 (863)
Q Consensus 25 ~~~~~~eAa~~Lir~tsed~--L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~ 102 (863)
..|.+.+|...|-++...++ -.+.-.+...+.+. .+.+-+...-|.-|.+.|+..-|+.+|.+++..|-+
T Consensus 108 ~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 179 (225)
T 2yhc_A 108 DPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLK--------DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD 179 (225)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred CcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence 46788999888888876543 23333333444322 223334455688899999999999999999999977
Q ss_pred CCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 103 STWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 103 ~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..+ ..-..+.+|..+..+|+.+.|++.+-+
T Consensus 180 ~~~---~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 180 TQA---TRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp SHH---HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCc---cHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 542 224678899999999999999987754
No 104
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=85.65 E-value=5.1 Score=43.21 Aligned_cols=57 Identities=19% Similarity=0.337 Sum_probs=40.3
Q ss_pred HHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 73 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 73 mVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+..-|.-|.+.|+...|+.+|.+++...... ....+.+|..+..+|+++.|+.+|.+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDN------TEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4445666777777777777777777665332 24567888888888998888877654
No 105
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=85.49 E-value=2.2 Score=34.86 Aligned_cols=56 Identities=21% Similarity=0.302 Sum_probs=45.7
Q ss_pred HhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 74 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 74 VLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..-|.-|.+.|+...|+.+|.+|+...... ..+++.+|..+..+|++++|+++|.+
T Consensus 13 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344666778899999999999999875432 24678999999999999999988755
No 106
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=85.42 E-value=4.2 Score=43.26 Aligned_cols=115 Identities=14% Similarity=0.007 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHhHhCcch--hhHHHHHHHHHhhhhccCC---------Ccch------hhHhHHHh
Q 002942 13 TRCGLWWVEMLKARHQYKDAATVYFRICGEEP--LHSAVMLEQASYCYLLSKP---------PMLH------KYGFHLVL 75 (863)
Q Consensus 13 ~R~all~~E~lk~~~~~~eAa~~Lir~tsed~--L~SALLLEQAA~c~L~~~p---------pm~R------KyAfhmVL 75 (863)
....|.++-+|-..|.|.+|...|-++...++ + ...-.|-. ++..+- +..+ ..+.|+-
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~---~~~~~a~l-~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~- 176 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL---VAWMKAVV-YGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA- 176 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH---HHHHHHHH-HHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH---HHHHHHHH-HHHcCCHHHHHHHHHHhhccCCcccHHHHHHH-
Confidence 45667788899999999999999988764333 3 22222211 111110 1111 1235544
Q ss_pred hccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 76 SGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 76 AGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.|.-+...|+...|++||.+|.. +..=..+.-...|.+|.....+|+.++|..+|-+
T Consensus 177 LG~al~~LG~~~eAl~~l~~a~~---g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~ 233 (282)
T 4f3v_A 177 HGVAAANLALFTEAERRLTEAND---SPAGEACARAIAWYLAMARRSQGNESAAVALLEW 233 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT---STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhc---CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 48889999999999999999982 2210112334778999999999999999988855
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=85.21 E-value=0.96 Score=41.15 Aligned_cols=61 Identities=16% Similarity=0.056 Sum_probs=49.9
Q ss_pred hHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 69 YGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 69 yAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.|--.---|+.|-+.|+...|+.+|.+|+.+.-.. -.+++.+|..+..+|+++.|+..|-+
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~ 72 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN------AILYSNRAACLTKLMEFQRALDDCDT 72 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHhhHHHhhccHHHHHHHHHH
Confidence 34444456999999999999999999999874332 24778899999999999999988855
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=85.18 E-value=2.9 Score=43.46 Aligned_cols=114 Identities=16% Similarity=0.105 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHhHhCcch------hhHHHHHHH------HHhhhhc---cCCCcchhhHhHHHhhcc
Q 002942 14 RCGLWWVEMLKARHQYKDAATVYFRICGEEP------LHSAVMLEQ------ASYCYLL---SKPPMLHKYGFHLVLSGD 78 (863)
Q Consensus 14 R~all~~E~lk~~~~~~eAa~~Lir~tsed~------L~SALLLEQ------AA~c~L~---~~ppm~RKyAfhmVLAGh 78 (863)
++-+..+.++...|.+.+|...|-++...+. +..++.+-+ |.-+|.+ ..|.. ...| ..-|.
T Consensus 152 ~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~---~~~~-~~la~ 227 (287)
T 3qou_A 152 EIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPED---AALA-TQLAL 227 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC---HHHH-HHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc---HHHH-HHHHH
Confidence 4566778899999999999999888765332 222222211 1111211 13321 1223 33467
Q ss_pred chhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 79 RYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 79 Ryskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
-|...|+..-|+.+|.+++...- +| .++..+..||..+..+|+.++|+.++.+
T Consensus 228 ~l~~~g~~~~A~~~l~~~l~~~p--~~--~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 228 QLHQVGRNEEALELLFGHLRXDL--TA--ADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT--TG--GGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhccc--cc--ccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 78899999999999999998743 22 3567889999999999999999987754
No 109
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=85.00 E-value=2.8 Score=43.56 Aligned_cols=90 Identities=24% Similarity=0.227 Sum_probs=63.9
Q ss_pred HHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHH
Q 002942 17 LWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSA 96 (863)
Q Consensus 17 ll~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A 96 (863)
...+..+...|.|.+|...|-++-..++- .+.-+..-|.-|.+.|+...|+.+|.+|
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----------------------~~~~~~~la~~~~~~~~~~~A~~~~~~a 64 (281)
T 2c2l_A 8 KEQGNRLFVGRKYPEAAACYGRAITRNPL-----------------------VAVYYTNRALCYLKMQQPEQALADCRRA 64 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSC-----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc-----------------------cHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44566777889999988877665543320 1111223345556788899999999999
Q ss_pred HhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 97 VSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 97 ~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+.+..+. -..++.+|..+..+|++++|+++|.+
T Consensus 65 l~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 65 LELDGQS------VKAHFFLGQCQLEMESYDEAIANLQR 97 (281)
T ss_dssp TTSCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9874322 25788999999999999999988765
No 110
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=84.96 E-value=4.6 Score=42.95 Aligned_cols=56 Identities=21% Similarity=0.299 Sum_probs=38.9
Q ss_pred HhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 74 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 74 VLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..-|.-|.+.|+...|+.+|.+|+.+... ...+++.+|..+..+|++++|+..|.+
T Consensus 207 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 262 (388)
T 1w3b_A 207 INLGNVLKEARIFDRAVAAYLRALSLSPN------HAVVHGNLACVYYEQGLIDLAIDTYRR 262 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34466677777777777777777766322 124667788888888888888877655
No 111
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=84.91 E-value=4.4 Score=41.63 Aligned_cols=53 Identities=9% Similarity=-0.025 Sum_probs=40.1
Q ss_pred ccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 77 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 77 GhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.-|...|+...|+.+|.+++..+... ..+.+.+|..+..+|+++.|+..+.+
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~ 179 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVCVWD------AELRELRAECFIKEGEPRKAISDLKA 179 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677888888888888888888775433 24677788888888888888776654
No 112
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=84.51 E-value=3.7 Score=42.37 Aligned_cols=69 Identities=9% Similarity=-0.049 Sum_probs=50.5
Q ss_pred chhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcC-CCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 66 LHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG-STWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 66 ~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~-~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.+.++.++-.-|.-|...|+...|+.+|.+|+..+.. ..| ..+-.+...||..+..+|+++.|+.++..
T Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~-~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 180 (293)
T 3u3w_A 111 FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV-YQNLYIENAIANIYAENGYLKKGIDLFEQ 180 (293)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT-THHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444433333355677888999999999999997554 333 23334789999999999999999988755
No 113
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=84.47 E-value=6.2 Score=42.54 Aligned_cols=60 Identities=13% Similarity=0.009 Sum_probs=45.4
Q ss_pred HhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 70 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 70 AfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+.++..-|.-|.+.|+...|+.+|.+|+.+.... ..+++.+|..+..+|+++.|+..|.+
T Consensus 295 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 295 VRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN------VNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4456666778888888888888888888774332 25678888888999999999877755
No 114
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.38 E-value=1.3 Score=39.90 Aligned_cols=76 Identities=13% Similarity=0.149 Sum_probs=52.8
Q ss_pred cccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCc
Q 002942 379 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGI 458 (863)
Q Consensus 379 ~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~~~ 458 (863)
.+..|+.....++|+|.|..|+..=.+. +.. +...| ..+ .|..+
T Consensus 21 ~v~~g~~~~~~~~l~N~g~~p~~~~~~~-----------~~~---~~~~~---------------------f~v-~p~~g 64 (112)
T 2e6j_A 21 KVFTGSAHCYEAILYNKGSIDALFNMTP-----------PTS---ALGAC---------------------FVF-SPKEG 64 (112)
T ss_dssp EEESSCCEEEEEEEEECCSSCEEEEECC-----------CSS---HHHHH---------------------CEE-ESSEE
T ss_pred eEEECCEEEEEEEEEECCcceEEEEEec-----------CCc---cccCc---------------------EEE-ECCcC
Confidence 4678999999999999999876542210 000 00000 112 24467
Q ss_pred ccCCCCeEEEEEEEEecCCceeEEEEEEEEee
Q 002942 459 SIQGETPLLWPLWYRAAVPGKISLSITIYYEM 490 (863)
Q Consensus 459 ~L~pGes~~lPlwlra~~~G~~~l~lLfyYe~ 490 (863)
.|.||++..+.+.+.+...|...-.+.++-+.
T Consensus 65 ~i~pg~~~~i~V~f~~~~~g~f~~~i~v~~~g 96 (112)
T 2e6j_A 65 IIEPSGVQAIQISFSSIILGNFEEEFLVNVNG 96 (112)
T ss_dssp EECTTBCCEEEEEECCCCCEEEEEEECEEESS
T ss_pred EECCCCEEEEEEEEECCCcceEEEEEEEEECC
Confidence 89999999999999999999888777777554
No 115
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.27 E-value=1.5 Score=40.33 Aligned_cols=71 Identities=15% Similarity=0.191 Sum_probs=55.1
Q ss_pred cccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceee-cCCC
Q 002942 379 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFS-FPEG 457 (863)
Q Consensus 379 ~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~-~P~~ 457 (863)
.+..|+.+...+.|+|.|..|++. .+....| |. .|..
T Consensus 36 ~~~v~~~~~~~~~l~N~g~~~~~f-~~~~~~~-----------------------------------------F~i~P~~ 73 (122)
T 2ys4_A 36 TCPVKYSTQKILLVRNIGNKNAVF-HIKTCRP-----------------------------------------FSIEPAI 73 (122)
T ss_dssp SEESSSCEEEEEEEECCSSSCEEE-EEECCTT-----------------------------------------EEEESSE
T ss_pred CeecCCeEEEEEEEEECCCCCEEE-EEecCCC-----------------------------------------eEEECCc
Confidence 567899999999999999987763 2221111 11 2456
Q ss_pred cccCCCCeEEEEEEEEecCCceeEEEEEEEEeeC
Q 002942 458 ISIQGETPLLWPLWYRAAVPGKISLSITIYYEMG 491 (863)
Q Consensus 458 ~~L~pGes~~lPlwlra~~~G~~~l~lLfyYe~~ 491 (863)
+.|+||++.++.+.+++...|.++-.+.+.|+..
T Consensus 74 g~L~pg~~~~i~V~F~P~~~g~~~~~l~v~~~~g 107 (122)
T 2ys4_A 74 GTLNVGESMQLEVEFEPQSVGDHSGRLIVCYDTG 107 (122)
T ss_dssp EEECTTCEEEEEEEECCSSSBCCCCBCEEEESSS
T ss_pred CEECCCCEEEEEEEEEcCCCccEEEEEEEEECCC
Confidence 7899999999999999999999999988888554
No 116
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=83.96 E-value=1.1 Score=37.78 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=46.6
Q ss_pred HhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 74 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 74 VLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+-.|..|.+.|+...|+.+|.+|+.......+ .+++.+|..+..+|+++.|+++|.+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~~lg~~~~~~~~~~~A~~~~~~ 60 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKD-----EAYYLMGNAYRKLGDWQKALNNYQS 60 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHH-----HHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH-----HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34567778889999999999999998644321 2788999999999999999998865
No 117
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=83.88 E-value=1.8 Score=38.19 Aligned_cols=59 Identities=15% Similarity=0.059 Sum_probs=49.5
Q ss_pred hHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 71 FHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 71 fhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
-.+..-|..|.+.|+...|+.+|.+|+...... -.+++.+|..+..+|+++.|+.++.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~ 63 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNK 63 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 345567888889999999999999999986442 25788999999999999999988865
No 118
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=83.59 E-value=4.4 Score=42.62 Aligned_cols=59 Identities=20% Similarity=0.244 Sum_probs=48.6
Q ss_pred hHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 71 FHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 71 fhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.-+..-|.-|.+.|+...|+.+|.+|+...... ...++.+|..+..+|++++|+.+|.+
T Consensus 248 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 306 (365)
T 4eqf_A 248 SLWNRLGATLANGDRSEEAVEAYTRALEIQPGF------IRSRYNLGISCINLGAYREAVSNFLT 306 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------hHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344556778889999999999999999985432 35778999999999999999988866
No 119
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=83.26 E-value=2.2 Score=39.78 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=51.9
Q ss_pred hhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 68 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 68 KyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+-+--+..-|..|.+.|+...|+.+|.+|+.+.... -.+++.+|..+..+|++++|+.+|.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 70 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN------PIYLSNRAAAYSASGQHEKAAEDAEL 70 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC------HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 445566677888889999999999999999986542 35788999999999999999988866
No 120
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=83.23 E-value=4.7 Score=42.72 Aligned_cols=124 Identities=7% Similarity=-0.097 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHhHhC---c-ch-hhHHHHHHHHHhhhhcc-CCCc----chh------------
Q 002942 11 NATRCGLWWVEMLKARHQYKDAATVYFRICG---E-EP-LHSAVMLEQASYCYLLS-KPPM----LHK------------ 68 (863)
Q Consensus 11 ~A~R~all~~E~lk~~~~~~eAa~~Lir~ts---e-d~-L~SALLLEQAA~c~L~~-~ppm----~RK------------ 68 (863)
...++.++.+.++-..|.+.+|...+-++-. . +. .+...+.-.+ .+|... +... +++
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 90 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLG-EVLHCKGELTRSLALMQQTEQMARQHDVWH 90 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH-HHHHhcCcHHHHHHHHHHHHHHHHhcCcHH
Confidence 3445666777778889999998887665331 2 22 2333332222 222221 1111 111
Q ss_pred -hHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCcc--chhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 69 -YGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWS--HIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 69 -yAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~--~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.+.-+..-|.-|...|+...|+++|.+|+..++..+.. ...-..+..+|..+..+|++++|..++.+
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 160 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 160 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 11113345667888999999999999999999765432 33345677899999999999999988765
No 121
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=82.89 E-value=5.9 Score=45.17 Aligned_cols=112 Identities=13% Similarity=0.060 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcch-hh-----HHHH------HHHHHhhhhcc--CCCcchhhHhHHHhhccch
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEP-LH-----SAVM------LEQASYCYLLS--KPPMLHKYGFHLVLSGDRY 80 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~-L~-----SALL------LEQAA~c~L~~--~ppm~RKyAfhmVLAGhRy 80 (863)
+-...+.++...|.|.+|...|-++-..+. .. -|.+ .++|..+|-++ ..| ..+.-+..-|.-|
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~ 101 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP---EHPGIALWLGHAL 101 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHH
Confidence 445567788888999999998888765443 11 1111 12333333221 111 2233445567788
Q ss_pred hcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHh---CCHHHHHHHHHH
Q 002942 81 KKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVL---GMHDIAVAHMLE 135 (863)
Q Consensus 81 skagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~L---g~~~~Av~h~l~ 135 (863)
.+.|+...|+.+|++|+....+. ...++.+|..+..+ |+.++|++.+.+
T Consensus 102 ~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 102 EDAGQAEAAAAAYTRAHQLLPEE------PYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 89999999999999999875432 24678889999999 999999887765
No 122
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=82.82 E-value=2.3 Score=40.30 Aligned_cols=110 Identities=13% Similarity=0.075 Sum_probs=65.7
Q ss_pred HHHHHHHHhccchHHHHHHHHhHhCcch------hhHHHHH------HHHHhhhhcc--CCCcchhhHhHHHhhccchhc
Q 002942 17 LWWVEMLKARHQYKDAATVYFRICGEEP------LHSAVML------EQASYCYLLS--KPPMLHKYGFHLVLSGDRYKK 82 (863)
Q Consensus 17 ll~~E~lk~~~~~~eAa~~Lir~tsed~------L~SALLL------EQAA~c~L~~--~ppm~RKyAfhmVLAGhRysk 82 (863)
+-.+..+-..|.|.+|...|-++...++ ..-|.++ +.|-.+|-+. ..| - ..++..++.-.+..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~--~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D--NSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C--hHHHHHHHHHHHHh
Confidence 4456677788999999998887665432 1111111 3333333322 112 1 12232222221222
Q ss_pred CCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 83 CDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 83 agqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.+....|+.+|++|+...-+. -..++.+|+.+..+|++++|+.+|.+
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 133 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDN------FELACELAVQYNQVGRDEEALELLWN 133 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 223345799999999875432 24778999999999999999998866
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=82.78 E-value=5.1 Score=36.35 Aligned_cols=94 Identities=13% Similarity=-0.030 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHH
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYR 94 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~ 94 (863)
+-+..+.++...|.|.+|...+-++-..++ ..+.-+..-|.-|.+.|+...|+.+|.
T Consensus 49 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-----------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~ 105 (166)
T 1a17_A 49 YYGNRSLAYLRTECYGYALGDATRAIELDK-----------------------KYIKGYYRRAASNMALGKFRAALRDYE 105 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------------TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----------------------ccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 344556666667777777665554433222 111223344566777899999999999
Q ss_pred HHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 95 SAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 95 ~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+|+....... .-+.++.++.....+|+++.|++.+..
T Consensus 106 ~a~~~~p~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 106 TVVKVKPHDK----DAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHHHHSTTCH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 9999865432 223446666667888999999987654
No 124
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=82.75 E-value=5.8 Score=45.42 Aligned_cols=103 Identities=9% Similarity=-0.056 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHH
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYR 94 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~ 94 (863)
..+-.++-++..|.|+||-..+-++-. .....-.|-.--.|--|--.|.-|...|...-|+..|.
T Consensus 311 ~~le~a~~~~~qg~~~eA~~l~~~aL~---------------~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~ 375 (490)
T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLE---------------KQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYAR 375 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHH---------------HHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH---------------HHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 344456668888999998776654321 00000011111223333334445567788999999999
Q ss_pred HHHhhhcCCCccchhhh-----HHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 95 SAVSVYKGSTWSHIKDH-----VHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 95 ~A~~vY~~~~W~~~edH-----I~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+|+.+|+.. +=++| ....||..+..+|++++|..++.+
T Consensus 376 ~aL~i~~~~---lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~ 418 (490)
T 3n71_A 376 RMVDGYMKL---YHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICK 418 (490)
T ss_dssp HHHHHHHHH---SCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH---cCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999998741 12455 456789999999999999987755
No 125
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=82.67 E-value=6.3 Score=41.06 Aligned_cols=60 Identities=17% Similarity=0.069 Sum_probs=45.7
Q ss_pred HhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 70 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 70 AfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+..+..-|.-|.+.|+...|+.+|.+|+...... ..+++.+|..+..+|+++.|+..|.+
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 276 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND------YLLWNKLGATLANGNQSEEAVAAYRR 276 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3445556778888999999999999999875432 23677888888889999998877654
No 126
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=82.61 E-value=8.8 Score=39.49 Aligned_cols=60 Identities=5% Similarity=0.039 Sum_probs=49.9
Q ss_pred HhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHH-HHH
Q 002942 74 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAV-AHM 133 (863)
Q Consensus 74 VLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av-~h~ 133 (863)
..-|.-|.+.|+...|+.+|.+|+.+.+..+-......+++.+|..+..+|+.+.|+ .++
T Consensus 200 ~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~ 260 (293)
T 2qfc_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 345778889999999999999999998765555555678899999999999999994 444
No 127
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=82.32 E-value=2.8 Score=40.41 Aligned_cols=70 Identities=19% Similarity=0.329 Sum_probs=54.4
Q ss_pred chhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCC-ccch---------hhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 66 LHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGST-WSHI---------KDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 66 ~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~-W~~~---------edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..+.+.-+...|..|.+.|+...|+.+|.+|+..+.... |... .-.+++.+|..+..+|++++|+.++..
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 113 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK 113 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 334555666778888899999999999999999876533 2211 126888999999999999999988765
No 128
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=82.10 E-value=2 Score=36.05 Aligned_cols=56 Identities=14% Similarity=0.067 Sum_probs=46.5
Q ss_pred HhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 74 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 74 VLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..-|.-|.+.|+...|+.+|.+|+...... ..+.+.+|..+..+|++++|+..|.+
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~ 65 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPEE------SKYWLMKGKALYNLERYEEAVDCYNY 65 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 445667788899999999999999986543 24678999999999999999988865
No 129
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=81.74 E-value=4.4 Score=43.41 Aligned_cols=102 Identities=14% Similarity=0.033 Sum_probs=66.1
Q ss_pred HHHHHHHhccchHHHHHHHHhHhCcch-hhH--HH-HHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHH
Q 002942 18 WWVEMLKARHQYKDAATVYFRICGEEP-LHS--AV-MLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTY 93 (863)
Q Consensus 18 l~~E~lk~~~~~~eAa~~Lir~tsed~-L~S--AL-LLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY 93 (863)
..+..+-..|.|.+|...|-++-..+. -.. .+ -.+.+...+ +. ..| ..-|.-|.+.|+...|+.+|
T Consensus 184 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l--------~~-~~~-~nla~~~~~~g~~~~A~~~~ 253 (338)
T 2if4_A 184 MDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAV--------KN-PCH-LNIAACLIKLKRYDEAIGHC 253 (338)
T ss_dssp HHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHH--------HT-HHH-HHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHH--------HH-HHH-HHHHHHHHHcCCHHHHHHHH
Confidence 344455566789988888877554332 100 00 001111100 01 122 23456778899999999999
Q ss_pred HHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 94 RSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 94 ~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.+|+.+.... -..++.+|+.+..+|+++.|+++|.+
T Consensus 254 ~~al~~~p~~------~~a~~~lg~a~~~~g~~~~A~~~l~~ 289 (338)
T 2if4_A 254 NIVLTEEEKN------PKALFRRGKAKAELGQMDSARDDFRK 289 (338)
T ss_dssp HHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999986432 24689999999999999999999976
No 130
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=81.40 E-value=1.5 Score=42.42 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=47.2
Q ss_pred ccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcccCC
Q 002942 383 GDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQG 462 (863)
Q Consensus 383 GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~~~~L~p 462 (863)
+..+...|+|+|.+..++. .+|+++.|+.+++- |..+.|+|
T Consensus 34 ~~~~~~~l~L~N~s~~~Va-FKVKTT~p~~y~Vr--------------------------------------P~~GiI~P 74 (152)
T 1wic_A 34 SGEKKTLIVLTNVTKNIVA-FKVRTTAPEKYRVK--------------------------------------PSNSSCDP 74 (152)
T ss_dssp SSCCCEEEEEEBCSSSCEE-EEEEESCTTTEEEE--------------------------------------SSEEEECT
T ss_pred CceEEEEEEEEcCCCCeEE-EEEECCCCCceeec--------------------------------------CCCcEECC
Confidence 3345689999999998774 47888888655432 33567999
Q ss_pred CCeEEEEEEEEecCCceeEEEEEEEEe
Q 002942 463 ETPLLWPLWYRAAVPGKISLSITIYYE 489 (863)
Q Consensus 463 Ges~~lPlwlra~~~G~~~l~lLfyYe 489 (863)
|++..+-|++++.......=+|+|++-
T Consensus 75 ~~s~~V~V~lq~~~~~~~kDKFlVqs~ 101 (152)
T 1wic_A 75 GASIDIIVSPHGGLTVSAQDRFLIMAA 101 (152)
T ss_dssp TCEEEEEEEECSSSCCCSSCCEEEEEE
T ss_pred CCeEEEEEEecCcccCCCCCEEEEEEE
Confidence 999999999998632122224665553
No 131
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=80.61 E-value=3.2 Score=36.32 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=47.8
Q ss_pred hccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 76 SGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 76 AGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
-|..|.+.|+...|+.+|.+++..+.+..+ ....++.+|..+..+|+++.|+..|.+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~ 64 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVY---TPNALYWLGESYYATRNFQLAEAQFRD 64 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTT---HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcc---cHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 456677889999999999999998876543 246789999999999999999988765
No 132
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=80.53 E-value=3.7 Score=45.00 Aligned_cols=61 Identities=7% Similarity=-0.026 Sum_probs=35.9
Q ss_pred hhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHH---hCCHHHHHHHHHH
Q 002942 75 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAV---LGMHDIAVAHMLE 135 (863)
Q Consensus 75 LAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~---Lg~~~~Av~h~l~ 135 (863)
.-|.-|.+.|+...|+.+|.+|+............-..++.+|..+.. +|+++.|+..|..
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~ 440 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEK 440 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH
Confidence 335556666666666666666666655443322222356667777777 7777777666544
No 133
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=80.46 E-value=13 Score=38.25 Aligned_cols=68 Identities=4% Similarity=-0.105 Sum_probs=54.6
Q ss_pred hhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCC-HHHHHHHHHH
Q 002942 68 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGM-HDIAVAHMLE 135 (863)
Q Consensus 68 KyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~-~~~Av~h~l~ 135 (863)
..+.=+.--|.-|.+.|+...|+.+|.+|+.+.+..+-......+++.+|..+..+|+ ++.|++++-.
T Consensus 194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 3333344556777889999999999999999988776666667899999999999995 6999987755
No 134
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=80.37 E-value=6.7 Score=42.87 Aligned_cols=113 Identities=5% Similarity=-0.170 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCC-c----ch-------hhHhHHHhhccch
Q 002942 13 TRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPP-M----LH-------KYGFHLVLSGDRY 80 (863)
Q Consensus 13 ~R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~pp-m----~R-------KyAfhmVLAGhRy 80 (863)
..+-+..+.++...|.|.+|...+-++-..++- +-.+-..|.+|...+.. . ++ +.+.-+..-|.-|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHH
Confidence 345556677778888888888877776543321 33344444444443221 1 11 1122344556677
Q ss_pred hcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHH
Q 002942 81 KKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHM 133 (863)
Q Consensus 81 skagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~ 133 (863)
.+.|+...|+.+|.+|+....... .+.+.+|..+..+|+++.|+..|
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~ 361 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPENI------FPYIQLACLAYRENKFDDCETLF 361 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSSCS------HHHHHHHHHTTTTTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhChhhH------HHHHHHHHHHHHcCCHHHHHHHH
Confidence 778888888888888877654422 24555566666666666665544
No 135
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=80.27 E-value=5.4 Score=44.96 Aligned_cols=63 Identities=19% Similarity=0.173 Sum_probs=37.0
Q ss_pred HHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccch-hhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 73 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHI-KDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 73 mVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~-edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+..-|.-|.+.|+...|+.+|.+++..+...+-..- .-.+.+.+|..+..+|++++|++.|.+
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 444555666667777777777777666543111111 123566777777777777777766544
No 136
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=80.21 E-value=13 Score=34.13 Aligned_cols=85 Identities=11% Similarity=0.169 Sum_probs=59.4
Q ss_pred CCeEEEEEecCCccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCC
Q 002942 366 LPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFN 445 (863)
Q Consensus 366 ~P~L~v~~~~~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~ 445 (863)
+|=|.+... .|.....|+...+.++++|.|..+.....+.+. ++.. . +.
T Consensus 2 ~PDL~vt~i-tP~~~~~~~~~ti~atVkN~G~~~a~~~~V~ly------~~g~-~----------------v~------- 50 (114)
T 2l0d_A 2 IPDLVPVSL-TPVTVVPNTVNTMTATIENQGNKDSTSFNVSLL------VDGI-V----------------VD------- 50 (114)
T ss_dssp CCCEEEEEE-ECSEECTTSEEEEEEEEEECSSSCBCCEEEEEE------ETTE-E----------------EE-------
T ss_pred CCCcEEEec-cCCCcCCCCeEEEEEEEEECCCCCCCCEEEEEE------ECCE-E----------------Ec-------
Confidence 466666655 588899999999999999999987777666522 1110 0 00
Q ss_pred CCCcceeecCCCcccCCCCeEEEEEEEEec-CCceeEEEEEEEEe
Q 002942 446 KMPQAVFSFPEGISIQGETPLLWPLWYRAA-VPGKISLSITIYYE 489 (863)
Q Consensus 446 ~~~~~v~~~P~~~~L~pGes~~lPlwlra~-~~G~~~l~lLfyYe 489 (863)
..+ -..|.+|++.++.+-..+. ..|.+.|...+-.+
T Consensus 51 -------t~~-v~~LaaG~s~tv~~~w~~~~~~G~ytl~a~VD~~ 87 (114)
T 2l0d_A 51 -------TQT-VTSLESENSTNVDFHWTLDGTANSYTLTVNVDPE 87 (114)
T ss_dssp -------EEE-ESCBCBTCEEEEEEEEECCCSCSEEEEEEEECTT
T ss_pred -------cee-cccccCCCEEEEEEEEeecCcCceEEEEEEECCC
Confidence 000 1238999999999877766 58999999887443
No 137
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=80.17 E-value=3.8 Score=46.07 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=29.0
Q ss_pred CCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 84 DQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 84 gqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|+...|+.+|.+|+.+... ..-.-..++.+|..+..+|++++|+++|.+
T Consensus 235 g~~~~A~~~~~~al~~~p~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRK---ASSNPDLHLNRATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGG---GGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCC---cccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5566666666666665221 001223566777777777777777776654
No 138
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=80.09 E-value=3.5 Score=41.10 Aligned_cols=59 Identities=14% Similarity=-0.046 Sum_probs=39.6
Q ss_pred ccchhcCCC---cHHHHHHHHHHHhhhcCCCccc--hhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 77 GDRYKKCDQ---INHAIRTYRSAVSVYKGSTWSH--IKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 77 GhRyskagq---r~hAlRCY~~A~~vY~~~~W~~--~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.-|...|. ...|+.+|.+|+.+++..+-.. ..-.+++.||..+..+|+++.|+.++-.
T Consensus 183 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 183 ARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246 (272)
T ss_dssp HHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444455 5567778888877775433211 1114677899999999999999988755
No 139
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=79.88 E-value=3.9 Score=36.18 Aligned_cols=60 Identities=15% Similarity=0.046 Sum_probs=50.0
Q ss_pred HhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 70 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 70 AfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+--+..-|..|.+.|+...|+.+|.+|+...... -.+++.+|..+..+|+++.|+.++.+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRR 68 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4445667788889999999999999999986442 24788999999999999999988765
No 140
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=79.55 E-value=5.3 Score=38.32 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=49.4
Q ss_pred HhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 70 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 70 AfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+.-+..-|.-|.+.|+...|+.+|.+|+...... ...++.+|..+..+|+++.|+.+|.+
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~lg~~~~~~~~~~~A~~~~~~ 96 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL------AVAYFQRGMLYYQTEKYDLAIKDLKE 96 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 3345556788999999999999999999986432 24678999999999999999988866
No 141
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=79.44 E-value=55 Score=32.94 Aligned_cols=158 Identities=11% Similarity=0.118 Sum_probs=93.1
Q ss_pred cccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCc
Q 002942 379 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGI 458 (863)
Q Consensus 379 ~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~~~ 458 (863)
.+-.|+.....++++|.|..|+.=-.+.+ |.++.+ .+...
T Consensus 14 ~v~~g~~~~~~~~i~N~g~~pl~i~~~~~--p~~~~~--------------------------------------~~~~~ 53 (220)
T 2qsv_A 14 ISMPEDEGVVRLVVNNTDESDLQVAVVSL--PSFVSL--------------------------------------DDRAF 53 (220)
T ss_dssp SBCTTCCCEEEEEEEECSSSCEEEEEEEC--CTTEEC--------------------------------------SCCEE
T ss_pred cccCCCcceEEEEEEeCCCCceEEEeccC--CCceEe--------------------------------------eeCcc
Confidence 35679999999999999999985433322 433221 01235
Q ss_pred ccCCCCeEEEEEEEEecC---CceeEEEEEEEEeeCCCCCcceEEEEEEEEEEEEec-----------eeeEEEEEE-ee
Q 002942 459 SIQGETPLLWPLWYRAAV---PGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLP-----------SLNVSFQIS-PW 523 (863)
Q Consensus 459 ~L~pGes~~lPlwlra~~---~G~~~l~lLfyYe~~~~~~~~~~R~~R~~~~i~V~p-----------SL~vs~~~~-~s 523 (863)
.|+||++-++.+.+-+.. .|...-.+.++........ .... ++.....+.| .+.++.... -.
T Consensus 54 ~I~PG~~g~I~vt~~~~~~~~~G~~~~~i~v~~~~~~~~~--~~~~-~i~v~g~v~p~~~~~~~~~~~~i~~~~~~dfG~ 130 (220)
T 2qsv_A 54 RLQAREPRELNLSLAVPRNMPPGMKDEPLVLEVTSPETGK--KAVD-SVMVSLPLVDNFPALTAAQTGVMELSTYLDMGQ 130 (220)
T ss_dssp EECSSSCEEEEEEECCCTTCCSEEEEEEEEEEEECTTTCC--EEEE-EEEEEEEECCCGGGCCGGGCCCEECCCEEEEEE
T ss_pred eeCCCCceEEEEEEcchhcccCCceeeEEEEEEEcCCCCc--cccc-EEEEEEEEcccchhhhhccCCEEEEEeEEeeec
Confidence 599999999999998874 4766666666665411111 0111 3444444444 233331111 11
Q ss_pred ccCCceEEEEEEEEeCCCCCceEEEEEEeeecceEEeecCCCcccCCccccccccEEEEEEEEEec
Q 002942 524 SSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNR 589 (863)
Q Consensus 524 ~s~~~~~ll~v~V~N~~~~~~~~l~Qvs~vS~~W~l~~l~~~~~~~~~~~l~p~q~~~~~f~i~~~ 589 (863)
.. ....--.+.++|.... .+.|..|.+....=..+. ....+.|||...+-+.....
T Consensus 131 i~-g~~~~~~f~i~N~G~~-pL~I~~v~~scgct~~~~--------~~~~i~PGe~~~i~v~~~~~ 186 (220)
T 2qsv_A 131 LD-GETTKAAIEIRNVGAG-PLRLHSVTTRNPALTAVP--------DRTEIKPGGSTLLRIAVDPQ 186 (220)
T ss_dssp CT-TSCEEEEEEEEECSSS-CEEEEEEEECSTTEEEEE--------SCSEECTTCEEEEEEEECHH
T ss_pred cC-CCeEEEEEEEEECCCC-CEEEEEEEeCCCCEeeec--------CCccCCCCCEEEEEEEEecC
Confidence 22 2345567888896555 588888877655433332 13458899998877766553
No 142
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=78.78 E-value=2.4 Score=41.36 Aligned_cols=64 Identities=17% Similarity=0.102 Sum_probs=49.5
Q ss_pred HHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhh------HHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 72 HLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDH------VHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 72 hmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edH------I~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
-+.--|..+-+.|...-|+.||.+|+.+-..-...-+.+| +++.+|..+..||++++|+..+-+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k 82 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK 82 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3455678888999999999999999998655221122233 788999999999999999987644
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=78.47 E-value=4.4 Score=35.15 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=52.0
Q ss_pred cchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 65 MLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 65 m~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.......-+..-|..|.+.|+...|+.+|.+|+..+... ..+.+.+|..+..+|++++|++.+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~ 75 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEE 75 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 334445556666888889999999999999999875432 35788999999999999999988755
No 144
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=78.43 E-value=6.7 Score=44.19 Aligned_cols=111 Identities=15% Similarity=0.130 Sum_probs=72.2
Q ss_pred HHHHHHhccchHHHHHHHHhHhCc---ch-hhH--HHH------HHHHHhhhhccC------CCcchhhHhHHHhhccch
Q 002942 19 WVEMLKARHQYKDAATVYFRICGE---EP-LHS--AVM------LEQASYCYLLSK------PPMLHKYGFHLVLSGDRY 80 (863)
Q Consensus 19 ~~E~lk~~~~~~eAa~~Lir~tse---d~-L~S--ALL------LEQAA~c~L~~~------ppm~RKyAfhmVLAGhRy 80 (863)
.+.++...|.+.+|-..|-++... +. ... |.+ ++.|-.+|-.+- +.....++..+..-|.-|
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 445666678888887777776532 21 111 111 223333232210 001112366777778889
Q ss_pred hcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 81 KKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 81 skagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.+.|+...|+++|++++..... ...+++.||..+..+|++++|++.|.+
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLSTN------DANVHTAIALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHSSC------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999987522 235789999999999999999987754
No 145
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=78.42 E-value=7.7 Score=37.81 Aligned_cols=107 Identities=19% Similarity=0.253 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccC----------------CC---cchhhHhHHHh
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSK----------------PP---MLHKYGFHLVL 75 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~----------------pp---m~RKyAfhmVL 75 (863)
+.+..+.++...|.|.+|-..+-++-..++ ..+-.+-.-|.||...+ |. .....+--+..
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 122 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLK 122 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 344567788888999999888887665443 01111222223332221 11 12223344666
Q ss_pred hccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCH
Q 002942 76 SGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMH 126 (863)
Q Consensus 76 AGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~ 126 (863)
-|.-|.+.|+...|+.+|.+|+..... .| .-..++.||..+..+|+.
T Consensus 123 ~g~~~~~~~~~~~A~~~~~~al~~~p~-~~---~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 123 EGQKFQQAGNIEKAEENYKHATDVTSK-KW---KTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTSSCH-HH---HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhccHHHHHHHHHHHHhcCCC-cc---cHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999986221 00 124566777777777766
No 146
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=78.29 E-value=11 Score=35.36 Aligned_cols=68 Identities=18% Similarity=0.290 Sum_probs=50.2
Q ss_pred eeecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 002942 214 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 293 (863)
Q Consensus 214 ~~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i 293 (863)
....|+++++.++++|==..+..=-+|.|.. ++.. +....+
T Consensus 28 ~v~~G~~~ti~vtV~N~G~~~a~~~~V~lyv-----ng~~----------------------------------v~t~~v 68 (127)
T 3idu_A 28 VVGVNKLAEYEVHVKNLGGIGVPSTKVRVYI-----NGTL----------------------------------YKNWTV 68 (127)
T ss_dssp EECTTCCEEEEEEEEECSSSCEEEEEEEEEE-----TTEE----------------------------------EEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCccCCcEEEEEE-----CCEE----------------------------------EeeEEe
Confidence 4568999999999999888876554554442 1100 112355
Q ss_pred EECCCceEEEEEEEEeCceeEEEEEEE
Q 002942 294 SLGGAETILVQLMVTPKVEGILKIVGV 320 (863)
Q Consensus 294 ~L~p~etk~V~L~v~P~~~G~L~I~Gv 320 (863)
.|.+++++++.+..+|..+|.+.|.-+
T Consensus 69 ~La~G~s~tv~f~~~~~~~G~~~v~Av 95 (127)
T 3idu_A 69 SLGPKEEKVLTFNWTPTQEGMYRINAT 95 (127)
T ss_dssp EECTTCEEEEEEEECCSSCEEEEEEEE
T ss_pred ccCCCCeEEEEEEEEcCCCcEEEEEEE
Confidence 799999999999999999999888754
No 147
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=78.28 E-value=9.1 Score=42.88 Aligned_cols=106 Identities=14% Similarity=0.047 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHH
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYR 94 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~ 94 (863)
.++--.+-++..|.|++|-..+-++-. .+...-.|-.=-.|--|--.|.-|..-|...-|+..|+
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~---------------~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~ 353 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIIS---------------SNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGT 353 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT---------------CSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH---------------hccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 344445556667777777665544321 11111111111222233334445567788999999999
Q ss_pred HHHhhhcC--CCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 95 SAVSVYKG--STWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 95 ~A~~vY~~--~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+|+.+|+. ......--...+.||..+..+|++++|+..+.+
T Consensus 354 ~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 354 RTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999975 222222333567899999999999999877644
No 148
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=78.16 E-value=2 Score=40.06 Aligned_cols=68 Identities=21% Similarity=0.188 Sum_probs=52.1
Q ss_pred hhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcC---------CCccc---hhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 68 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG---------STWSH---IKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 68 KyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~---------~~W~~---~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+-|-.+.--|..|-+.|+...|+++|.+|+.++.. ..|.. ..--+++.+|..+..+|+++.|+.++..
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 44566677788888999999999999999998532 11111 1124788999999999999999988755
No 149
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=77.90 E-value=13 Score=41.02 Aligned_cols=112 Identities=11% Similarity=-0.004 Sum_probs=64.0
Q ss_pred HHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCc-----c-------hhhHhHHHhhccchhcC
Q 002942 16 GLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPM-----L-------HKYGFHLVLSGDRYKKC 83 (863)
Q Consensus 16 all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm-----~-------RKyAfhmVLAGhRyska 83 (863)
-...+.++...|.+.+|...+-++-..++- +-.+-..|.+|+..+... + .+.+.-+..-|.-|.+.
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Confidence 344556677778888887777766543321 111222333333221110 0 12233445566777788
Q ss_pred CCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 84 DQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 84 gqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|+...|+.+|.+|+....... .+.+.+|..+..+|+++.|+..|.+
T Consensus 324 ~~~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~ 369 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNPENV------YPYIQLACLLYKQGKFTESEAFFNE 369 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTTCS------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888888887654322 3556677777777777777665543
No 150
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=77.82 E-value=6.3 Score=36.63 Aligned_cols=69 Identities=22% Similarity=0.230 Sum_probs=49.6
Q ss_pred ccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcccCC
Q 002942 383 GDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQG 462 (863)
Q Consensus 383 GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~~~~L~p 462 (863)
|..+...|+|+|.+..++. .+|+++.|+.+++. |..+.|+|
T Consensus 26 ~~~~~~~l~L~N~s~~~va-FKVKTT~p~~y~Vr--------------------------------------P~~G~i~P 66 (128)
T 1z9l_A 26 TDVVTTNLKLQNPSDRKVC-FKVKTTAPRRYCVR--------------------------------------PNSGVIDP 66 (128)
T ss_dssp SSCEEEEEEEECCSSSCEE-EEEEESCGGGEEEE--------------------------------------SCEEEECT
T ss_pred CceEEEEEEEECCCCCeEE-EEEECCCCCceEEe--------------------------------------CCCcEECC
Confidence 4677899999999998774 47888888655432 33567999
Q ss_pred CCeEEEEEEEEecC--Cc-eeEEEEEEEEee
Q 002942 463 ETPLLWPLWYRAAV--PG-KISLSITIYYEM 490 (863)
Q Consensus 463 Ges~~lPlwlra~~--~G-~~~l~lLfyYe~ 490 (863)
|++..+-|++++.. +- ...=+|++++-.
T Consensus 67 ~~s~~v~V~~~~~~~~p~~~~~dkF~V~s~~ 97 (128)
T 1z9l_A 67 GSIVTVSVMLQPFDYDPNEKSKHKFMVQTIF 97 (128)
T ss_dssp TCEEEEEEEECCCCCCTTCCCCCEEEEEEEE
T ss_pred CCeEEEEEEECcCcCCcccccCCEEEEEEEE
Confidence 99999999999752 21 223367777754
No 151
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=77.62 E-value=5.5 Score=47.90 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=76.5
Q ss_pred HHHHHHHHHhccchHHHHHHHHhHhCcch-h------hHHHH-----HHHHHhhhhcc---CCCcchhhHhHHHhhccch
Q 002942 16 GLWWVEMLKARHQYKDAATVYFRICGEEP-L------HSAVM-----LEQASYCYLLS---KPPMLHKYGFHLVLSGDRY 80 (863)
Q Consensus 16 all~~E~lk~~~~~~eAa~~Lir~tsed~-L------~SALL-----LEQAA~c~L~~---~ppm~RKyAfhmVLAGhRy 80 (863)
-...+.++...|.|.+|...|-++-.-++ . ..-++ +++|-.||-++ +| +++--+..-|.-|
T Consensus 46 ~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P----~~~~a~~~Lg~~~ 121 (723)
T 4gyw_A 46 HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP----AFADAHSNLASIH 121 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHH
Confidence 34567889999999999998887664332 1 11111 23455555432 32 2344445568889
Q ss_pred hcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 81 KKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 81 skagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.+.|+...|+.+|++|+++--+ ....++.||..+..+|++++|++++.+
T Consensus 122 ~~~g~~~eAi~~~~~Al~l~P~------~~~a~~~L~~~l~~~g~~~~A~~~~~k 170 (723)
T 4gyw_A 122 KDSGNIPEAIASYRTALKLKPD------FPDAYCNLAHCLQIVCDWTDYDERMKK 170 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC------ChHHHhhhhhHHHhcccHHHHHHHHHH
Confidence 9999999999999999987432 124678899999999999999877644
No 152
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=77.39 E-value=11 Score=36.62 Aligned_cols=106 Identities=11% Similarity=0.050 Sum_probs=66.4
Q ss_pred HHHHHHHHhccchHHHHHHHHhHhCcch-hhHHHHHHHHHhhhhccCCCcch-hhHhHHHhhccchhcCCCcHHHHHHHH
Q 002942 17 LWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLEQASYCYLLSKPPMLH-KYGFHLVLSGDRYKKCDQINHAIRTYR 94 (863)
Q Consensus 17 ll~~E~lk~~~~~~eAa~~Lir~tsed~-L~SALLLEQAA~c~L~~~ppm~R-KyAfhmVLAGhRyskagqr~hAlRCY~ 94 (863)
+-.+..+...|.|.+|...+-++-.-++ ...+ | |. ... ..+.-..--|.-+.+.|+..-|+.||.
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~---~--a~--------~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~ 81 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE---E--AF--------DHAGFDAFCHAGLAEALAGLRSFDEALHSAD 81 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT---S--CC--------CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch---h--hh--------hhccchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3445566677889999988876543221 1000 0 00 000 011122333566778899999999999
Q ss_pred HHHhhhcCCCccchhh-hHH----HHHHHHHHHhCCHHHHHHHHHH
Q 002942 95 SAVSVYKGSTWSHIKD-HVH----FHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 95 ~A~~vY~~~~W~~~ed-HI~----~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+|+.+|+.++=---++ ..+ |..|.-...+|++++|+..|-+
T Consensus 82 kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 82 KALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 9999866433111111 245 8999999999999999988855
No 153
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=77.01 E-value=4.8 Score=34.93 Aligned_cols=56 Identities=16% Similarity=0.110 Sum_probs=45.5
Q ss_pred HhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 74 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 74 VLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..-|.-|.+.|+...|+.+|++|+...... ...++.+|..+..+|+++.|+..|.+
T Consensus 23 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 23 FTLGKTYAEHEQFDAALPHLRAALDFDPTY------SVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344666778899999999999999985432 23668899999999999999988755
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=76.06 E-value=6.3 Score=33.05 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=47.0
Q ss_pred HHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 73 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 73 mVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+..-|..|...|+...|+++|.+|+..+... -.+.+.+|..+..+|+++.|+..+.+
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~ 63 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCK 63 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 4455777888999999999999999886543 34678899999999999999988755
No 155
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=75.95 E-value=6.6 Score=33.56 Aligned_cols=62 Identities=18% Similarity=0.159 Sum_probs=49.5
Q ss_pred hhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 68 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 68 KyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+.+.-+...|..|...|+...|+.+|.+|+...... -.+.+.+|..+..+|+++.|+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~ 71 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN------AVYFCNRAAAYSKLGNYAGAVQDCER 71 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 334445566777788899999999999999875432 34778999999999999999988755
No 156
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=75.76 E-value=6.5 Score=33.28 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=47.6
Q ss_pred hHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 71 FHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 71 fhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.-+..-|..|...|+...|+.+|.+|+..+... ..+.+.+|..+...|+++.|+..|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~ 68 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQK 68 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc------HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 334455677888999999999999999876432 24678899999999999999988755
No 157
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=75.73 E-value=6.6 Score=43.38 Aligned_cols=115 Identities=7% Similarity=0.040 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCc-----c-------hhhHhHHHhhccchh
Q 002942 14 RCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPM-----L-------HKYGFHLVLSGDRYK 81 (863)
Q Consensus 14 R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm-----~-------RKyAfhmVLAGhRys 81 (863)
++-+..+.++...|.|.+|-..|-++-..++ ..+-.+-..|.+|+..+... + .+...-+..-|.-|.
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445566777788889998888877654332 01111222233333221100 0 111233455678888
Q ss_pred cCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 82 KCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 82 kagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+.|+...|+.+|.+|+..+.... .+.+.+|..+..+|+++.|+++|.+
T Consensus 356 ~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLKFPTLP------EVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCT------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999865432 4778899999999999999988755
No 158
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=75.58 E-value=13 Score=34.51 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=53.6
Q ss_pred cCceEEEEEEEeCcccccEEee-------eEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeee
Q 002942 217 AGEPVKVDIEFKNPLQIPISIS-------NISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLS 289 (863)
Q Consensus 217 vgEpi~V~V~L~NPL~ipL~ls-------~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 289 (863)
.|+.+.+.+++.||=.-++.|+ |+.|. +.++ +. +=+| |++..|+..
T Consensus 16 ~g~~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~----d~~G--------------~~--------Vwrw-S~~~~FtQa 68 (120)
T 3isy_A 16 EPEQIKFNMSLKNQSERAIEFQFSTGQKFELVVY----DSEH--------------KE--------RYRY-SKEKMFTQA 68 (120)
T ss_dssp CSSCEEEEEEEEECSSSCEEEEESSSCCEEEEEE----CTTC--------------CE--------EEET-TTTCCCCCC
T ss_pred CCCeEEEEEEEEcCCCCcEEEEeCCCCEEEEEEE----CCCC--------------CE--------EEEc-cccchhhhh
Confidence 6899999999999999888776 22222 1101 00 0111 233456676
Q ss_pred eeeEEECCCceEEEEEEEE-eCceeEEEEEEE
Q 002942 290 EVDISLGGAETILVQLMVT-PKVEGILKIVGV 320 (863)
Q Consensus 290 ~~~i~L~p~etk~V~L~v~-P~~~G~L~I~Gv 320 (863)
....+|.|+|++......- +..+|.+.+.+.
T Consensus 69 ~~~~tl~pGE~~~f~~~w~~~~~pG~Ytl~a~ 100 (120)
T 3isy_A 69 FQNLTLESGETYDFSDVWKEVPEPGTYEVKVT 100 (120)
T ss_dssp CEEEEECTTCEEEEEEEESSCCCSEEEEEEEE
T ss_pred hceEEECCCCEEEEEEEeCCCCCCccEEEEEE
Confidence 6799999999999999998 457898888754
No 159
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=75.22 E-value=3.4 Score=46.76 Aligned_cols=53 Identities=13% Similarity=0.043 Sum_probs=32.9
Q ss_pred ccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 77 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 77 GhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.-|.+.|+...|+.+|.+|+++.... -..++.+|..+..+|++++|+++|.+
T Consensus 47 g~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~ 99 (477)
T 1wao_1 47 SLAYLRTECYGYALGDATRAIELDKKY------IKGYYRRAASNMALGKFRAALRDYET 99 (477)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333445666777777777777663221 23566777777777777777766544
No 160
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=75.21 E-value=8.7 Score=40.72 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=11.8
Q ss_pred ccchhcCCCcHHHHHHHHHHHhh
Q 002942 77 GDRYKKCDQINHAIRTYRSAVSV 99 (863)
Q Consensus 77 GhRyskagqr~hAlRCY~~A~~v 99 (863)
|.-|.+.|+...|+.+|.+|+..
T Consensus 278 ~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 278 ANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 33444555555555555555544
No 161
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.98 E-value=6.8 Score=35.90 Aligned_cols=64 Identities=13% Similarity=0.091 Sum_probs=51.5
Q ss_pred cCCceeecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeee
Q 002942 210 EESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLS 289 (863)
Q Consensus 210 ~~~~~~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 289 (863)
-+...|.+|+.-+..+.|+|-=..+..+ .|+ .. ..|.++
T Consensus 32 l~fg~~~v~~~~~~~~~l~N~g~~~~~f-----~~~--~~----------------------------------~~F~i~ 70 (122)
T 2ys4_A 32 LNFSTCPVKYSTQKILLVRNIGNKNAVF-----HIK--TC----------------------------------RPFSIE 70 (122)
T ss_dssp ECCCSEESSSCEEEEEEEECCSSSCEEE-----EEE--CC----------------------------------TTEEEE
T ss_pred eecCCeecCCeEEEEEEEEECCCCCEEE-----EEe--cC----------------------------------CCeEEE
Confidence 4577899999999999999987776654 232 11 147777
Q ss_pred eeeEEECCCceEEEEEEEEeCceeE
Q 002942 290 EVDISLGGAETILVQLMVTPKVEGI 314 (863)
Q Consensus 290 ~~~i~L~p~etk~V~L~v~P~~~G~ 314 (863)
...-.|.|+++..|.+++.|+..|.
T Consensus 71 P~~g~L~pg~~~~i~V~F~P~~~g~ 95 (122)
T 2ys4_A 71 PAIGTLNVGESMQLEVEFEPQSVGD 95 (122)
T ss_dssp SSEEEECTTCEEEEEEEECCSSSBC
T ss_pred CCcCEECCCCEEEEEEEEEcCCCcc
Confidence 7789999999999999999999875
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=74.70 E-value=7.3 Score=33.37 Aligned_cols=58 Identities=12% Similarity=0.001 Sum_probs=47.5
Q ss_pred HHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 72 HLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 72 hmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.+..-|..|...|+...|+.+|.+|+..+... .-+++.+|..+..+|+++.|+..+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~ 63 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTN------MTYITNQAAVYFEKGDYNKCRELCEK 63 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34556777888999999999999999986432 24678899999999999999988755
No 163
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=74.42 E-value=5.5 Score=37.10 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=49.9
Q ss_pred EEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcccCCCC
Q 002942 385 LRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGET 464 (863)
Q Consensus 385 i~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~~~~L~pGe 464 (863)
.+...|.|+|.+..++.. +|+++.|+-+++. |.-+.|+||+
T Consensus 26 ~~~~~l~l~N~s~~~vaF-KVKTT~p~~y~Vr--------------------------------------P~~Gii~P~~ 66 (126)
T 1msp_A 26 KHTYHIKITNAGGRRIGW-AIKTTNMRRLSVD--------------------------------------PPCGVLDPKE 66 (126)
T ss_dssp CCCEEEEEEECSSSCEEE-EEEESCTTTEEEE--------------------------------------SCEEEECTTC
T ss_pred ceEEEEEEECCCCCeEEE-EEEcCCCCcEEEE--------------------------------------CCCeEECCCC
Confidence 466889999999988754 7888888555432 3356799999
Q ss_pred eEEEEEEEEecCC---ceeEEEEEEEEeeC
Q 002942 465 PLLWPLWYRAAVP---GKISLSITIYYEMG 491 (863)
Q Consensus 465 s~~lPlwlra~~~---G~~~l~lLfyYe~~ 491 (863)
+..+.|++++-.. ....=+|++.|-..
T Consensus 67 s~~v~V~~q~~~~~~~~~~kDKf~Vq~~~~ 96 (126)
T 1msp_A 67 KVLMAVSCDTFNAATEDLNNDRITIEWTNT 96 (126)
T ss_dssp EEEEEEEECCCCGGGSCCSSCEEEEEEEEC
T ss_pred EEEEEEEecCCCCCCCccCCCEEEEEEEEC
Confidence 9999999998422 23344688888664
No 164
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=74.17 E-value=5.4 Score=39.19 Aligned_cols=66 Identities=21% Similarity=0.199 Sum_probs=56.0
Q ss_pred HhHHHhhccchhcCCCcHHHHHHHHHHHhhhcC----C---------------CccchhhhHHHHHHHHHHHhCCHHHHH
Q 002942 70 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG----S---------------TWSHIKDHVHFHIGQWYAVLGMHDIAV 130 (863)
Q Consensus 70 AfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~----~---------------~W~~~edHI~~tLGrq~~~Lg~~~~Av 130 (863)
+-.|++-|+-+-+.|+..-|...|++|++..+. + .|...|..+-|.|++.+..+++.++||
T Consensus 63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai 142 (167)
T 3ffl_A 63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI 142 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence 456788889999999999999999999999983 1 155667789999999999999999999
Q ss_pred HHHHH
Q 002942 131 AHMLE 135 (863)
Q Consensus 131 ~h~l~ 135 (863)
.-+..
T Consensus 143 ~~Le~ 147 (167)
T 3ffl_A 143 AILDG 147 (167)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 87744
No 165
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=73.49 E-value=15 Score=41.16 Aligned_cols=63 Identities=10% Similarity=0.096 Sum_probs=47.0
Q ss_pred HHhhccchhcCCCcHHHHHHHHHHHhhhcC--CCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 73 LVLSGDRYKKCDQINHAIRTYRSAVSVYKG--STWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 73 mVLAGhRyskagqr~hAlRCY~~A~~vY~~--~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|--.|.-|..-|...-|+..|++|+.+|+. .....---.....||..+..+|+.++|+.++.+
T Consensus 343 ~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 343 MYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKK 407 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 334455567789999999999999999985 222222223567889999999999999987654
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.21 E-value=7 Score=34.61 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=52.9
Q ss_pred hhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 67 HKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 67 RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.+.+.-+...|..|.+.|+...|+.+|.+|+...... .....+++.+|..+..+|++++|+..+..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 90 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP---QDQAVLHRNRAACHLKLEDYDKAETEASK 90 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc---hHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 3556677788899999999999999999999875421 11135778899999999999999988755
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=72.78 E-value=4.3 Score=36.34 Aligned_cols=56 Identities=11% Similarity=0.058 Sum_probs=46.6
Q ss_pred HhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 74 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 74 VLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..-|..|.+.|+..-|+.+|++|+...-.. .-.++.+|..+..+|++++|+..|.+
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~ 76 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNH 76 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445677888999999999999999975443 23678999999999999999988865
No 168
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=72.63 E-value=6.5 Score=44.17 Aligned_cols=114 Identities=9% Similarity=-0.077 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhc---------cchHHHHHHHHhHhCcch-------hhHHHH-------------HHHHHhhhhcc--C
Q 002942 14 RCGLWWVEMLKAR---------HQYKDAATVYFRICGEEP-------LHSAVM-------------LEQASYCYLLS--K 62 (863)
Q Consensus 14 R~all~~E~lk~~---------~~~~eAa~~Lir~tsed~-------L~SALL-------------LEQAA~c~L~~--~ 62 (863)
.+-...+.++... |.|.+|...|-++-..++ ..+-++ +++|-.+|-++ .
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 250 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV 250 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 4556667788888 999999988887654221 112222 34444444432 1
Q ss_pred CCcchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHH
Q 002942 63 PPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHM 133 (863)
Q Consensus 63 ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~ 133 (863)
.|..+..+.-+..-|.-|.+.|+...|+.+|++|+.+..+. ....+.+|+.+..+|++++|++.+
T Consensus 251 ~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 251 DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW------PEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23333566667777888999999999999999999985432 246788899999999999998754
No 169
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=72.61 E-value=5 Score=42.67 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=39.4
Q ss_pred CCcHHHHHHHHHHHhhhcCCCccchh---------------hhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 84 DQINHAIRTYRSAVSVYKGSTWSHIK---------------DHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 84 gqr~hAlRCY~~A~~vY~~~~W~~~e---------------dHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+...+. ..|..++-.|+.+.|.-+. +.++|.||..+..+|++++|+++|-+
T Consensus 131 ~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~ 196 (282)
T 4f3v_A 131 AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTE 196 (282)
T ss_dssp TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444555 6677777777777775543 34899999999999999999999976
No 170
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=71.43 E-value=4.4 Score=38.38 Aligned_cols=58 Identities=9% Similarity=-0.050 Sum_probs=46.8
Q ss_pred HHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 72 HLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 72 hmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
-+..-|.-|.+.|+..-|+.+|++|+..--. .-..++.||..+..+|++++|+.+|.+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~Ai~~~~~ 95 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY------NVDYIMGLAAIYQIKEQFQQAADLYAV 95 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 3344566777899999999999999987432 234678999999999999999998866
No 171
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=71.38 E-value=25 Score=36.28 Aligned_cols=111 Identities=8% Similarity=0.130 Sum_probs=71.0
Q ss_pred HHHHHHHHhccchHHHHHHHHhHhCcch-------hhHHHH------HHHHHhhhhcc--CCCcchhhHhHHHhhccchh
Q 002942 17 LWWVEMLKARHQYKDAATVYFRICGEEP-------LHSAVM------LEQASYCYLLS--KPPMLHKYGFHLVLSGDRYK 81 (863)
Q Consensus 17 ll~~E~lk~~~~~~eAa~~Lir~tsed~-------L~SALL------LEQAA~c~L~~--~ppm~RKyAfhmVLAGhRys 81 (863)
+.++.++...|.+.+|...|-|+-..++ +.-|.+ ++.|-.+|-++ .+|. .+-.++-.|-..|.
T Consensus 103 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~~~~ 180 (308)
T 2ond_A 103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART--RHHVYVTAALMEYY 180 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC--CTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHH
Confidence 3456677788999999988888765322 111221 13333333332 1221 13334434444454
Q ss_pred cCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 82 KCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 82 kagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..|....|+.+|.+|+..+-.. ..+...+|.....+|++++|...|-+
T Consensus 181 ~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~g~~~~A~~~~~~ 228 (308)
T 2ond_A 181 CSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5799999999999999987542 35667888889999999999887755
No 172
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=70.86 E-value=23 Score=36.81 Aligned_cols=112 Identities=9% Similarity=-0.094 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcch-hhHHHHH------HHHHhhhhcc---CCCcchhhHhHHHhh-ccchhcC
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVML------EQASYCYLLS---KPPMLHKYGFHLVLS-GDRYKKC 83 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~-L~SALLL------EQAA~c~L~~---~ppm~RKyAfhmVLA-GhRyska 83 (863)
+-++.+.++...|.+.+|-..|-+-.+.+. +.-|.++ +.|--+|-.+ .|... -.++..+ ...+...
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~---~~~l~~a~~~l~~~~ 179 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT---LTQLATAWVSLAAGG 179 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH---HHHHHHHHHHHHhCc
Confidence 456677888888999999888877222222 1112211 1222222111 22111 0111111 1223345
Q ss_pred CCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 84 DQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 84 gqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|+.+-|+.+|.+++..+-. .-.+++.+|..+..+|++++|++.|.+
T Consensus 180 ~~~~eA~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKCSP------TLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp THHHHHHHHHHHHHHHSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7889999999999998543 235788999999999999999988866
No 173
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.85 E-value=7.6 Score=34.60 Aligned_cols=80 Identities=10% Similarity=0.062 Sum_probs=58.3
Q ss_pred cCCceeecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeee
Q 002942 210 EESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLS 289 (863)
Q Consensus 210 ~~~~~~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 289 (863)
-|.-.+..|++.+-.++|+|.=++|+.++-+ ...... . ..|+++
T Consensus 17 ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~-------~~~~~~------------------~-----------~~f~v~ 60 (112)
T 2e6j_A 17 LDIGKVFTGSAHCYEAILYNKGSIDALFNMT-------PPTSAL------------------G-----------ACFVFS 60 (112)
T ss_dssp EEEEEEESSCCEEEEEEEEECCSSCEEEEEC-------CCSSHH------------------H-----------HHCEEE
T ss_pred EecEeEEECCEEEEEEEEEECCcceEEEEEe-------cCCccc------------------c-----------CcEEEE
Confidence 4566788999999999999999888877542 110000 0 014444
Q ss_pred eeeEEECCCceEEEEEEEEeCceeEEEEEEEEEEecc
Q 002942 290 EVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSG 326 (863)
Q Consensus 290 ~~~i~L~p~etk~V~L~v~P~~~G~L~I~Gv~~~L~g 326 (863)
...=.|.|+++..|.+++.|+..|.+.-. +.+.+.|
T Consensus 61 p~~g~i~pg~~~~i~V~f~~~~~g~f~~~-i~v~~~g 96 (112)
T 2e6j_A 61 PKEGIIEPSGVQAIQISFSSIILGNFEEE-FLVNVNG 96 (112)
T ss_dssp SSEEEECTTBCCEEEEEECCCCCEEEEEE-ECEEESS
T ss_pred CCcCEECCCCEEEEEEEEECCCcceEEEE-EEEEECC
Confidence 55788999999999999999999988755 6666665
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=70.17 E-value=3.6 Score=44.14 Aligned_cols=68 Identities=18% Similarity=0.237 Sum_probs=53.1
Q ss_pred hhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCC-ccc----------hhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 68 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGST-WSH----------IKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 68 KyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~-W~~----------~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+.|-.+..-|..|.+.|....|+++|.+|+....... +.. +...+++.+|..+..+|+++.|+.++.+
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566677789999999999999999999998764422 001 1114889999999999999999988855
No 175
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=69.96 E-value=9.7 Score=41.83 Aligned_cols=112 Identities=7% Similarity=-0.048 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcch-------hhHHHH------HHHHHhhhhcc--CCCcchhhHhHHHhhccc
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEP-------LHSAVM------LEQASYCYLLS--KPPMLHKYGFHLVLSGDR 79 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~-------L~SALL------LEQAA~c~L~~--~ppm~RKyAfhmVLAGhR 79 (863)
+-...+.++...|.|.+|-..+-++-..++ .+..++ ++.|-.+|-++ ..| +.+.-+..-|.-
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P---~~~~a~~~~g~~ 175 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP---KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC---CCHHHHHHHHHH
Confidence 344556677888999999888877664332 111121 33444444332 112 122222333556
Q ss_pred hhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 80 YKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 80 yskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.+.|....|+.||++|+.+--. .-|.++.+|..+..+|++++|+..+.+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~------~~~a~~~lg~~~~~~g~~~eAl~~~~~ 225 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK------NYHAWQHRQWVIQEFKLWDNELQYVDQ 225 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc------CHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 77778999999999999986432 236778889999999999999876644
No 176
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=69.78 E-value=28 Score=27.77 Aligned_cols=83 Identities=16% Similarity=0.170 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHH
Q 002942 13 TRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRT 92 (863)
Q Consensus 13 ~R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRC 92 (863)
.++-...+.++...|.|.+|-..+-++-..++ . .+.-+..-|.-|.+.|+...|+.+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------------------~----~~~~~~~l~~~~~~~~~~~~A~~~ 65 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------------------N----NAEAWYNLGNAYYKQGDYDEAIEY 65 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------T----CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-------------------C----CHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34555667788888999988887766543322 0 011122335556678889999999
Q ss_pred HHHHHhhhcCCCccchhhhHHHHHHHHHHHhC
Q 002942 93 YRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLG 124 (863)
Q Consensus 93 Y~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg 124 (863)
|.+|+....+. ...++.+|..+..+|
T Consensus 66 ~~~a~~~~p~~------~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 66 YQKALELDPNN------AEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHCTTC------HHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCC------HHHHHHHHHHHHhcC
Confidence 99999875332 234566676665543
No 177
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=69.42 E-value=13 Score=35.10 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=24.1
Q ss_pred eEEEEEEEeCcccccEEeeeEEEEEEEe
Q 002942 220 PVKVDIEFKNPLQIPISISNISLICELS 247 (863)
Q Consensus 220 pi~V~V~L~NPL~ipL~ls~I~L~~~~~ 247 (863)
+|.+.+.++||..+||.++.+.+.....
T Consensus 19 ~~~~~l~V~NPN~~~l~i~gl~y~v~ln 46 (136)
T 3but_A 19 EIVALAKVRNEDVVPIVVSGYHYTIEMN 46 (136)
T ss_dssp EEEEEEEEECCSSSCEEEEEEEEEEEET
T ss_pred EEEEEEEEeCCCCcceeeeceEEEEEEC
Confidence 5899999999999999999887766554
No 178
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=69.16 E-value=8 Score=42.14 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=45.6
Q ss_pred HHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHH-HHHhCCHHHHHHHHHH
Q 002942 73 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQW-YAVLGMHDIAVAHMLE 135 (863)
Q Consensus 73 mVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq-~~~Lg~~~~Av~h~l~ 135 (863)
+..-|.-|.+.|+...|+.||.+|+..... .....++++.+|.. .+.+|+.+.|+.++..
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~k 397 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSKELT---PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIE 397 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCCC---HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344578899999999999999999986322 12234578888875 4578999999998866
No 179
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=68.88 E-value=26 Score=34.95 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=33.9
Q ss_pred hhccchhc----CCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHH----hCCHHHHHHHHHH
Q 002942 75 LSGDRYKK----CDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAV----LGMHDIAVAHMLE 135 (863)
Q Consensus 75 LAGhRysk----agqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~----Lg~~~~Av~h~l~ 135 (863)
.-|.-|.. .|....|+.+|++|+.. + .....+.||..+.. .++++.|+.+|.+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~ 139 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDL----K----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTK 139 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHc----C----CccHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 34455555 67777777777777764 1 22456667777777 7777777766644
No 180
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=68.35 E-value=27 Score=34.88 Aligned_cols=109 Identities=16% Similarity=0.138 Sum_probs=67.2
Q ss_pred HHHHHHHHHh----ccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhc----cCCC-----cch-----hhHhHHHhhc
Q 002942 16 GLWWVEMLKA----RHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLL----SKPP-----MLH-----KYGFHLVLSG 77 (863)
Q Consensus 16 all~~E~lk~----~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~----~~pp-----m~R-----KyAfhmVLAG 77 (863)
-...+.++.. .+.+.+|...|-++...+. +-.+-..|.+|+. .+.. .++ ..+.-+..-|
T Consensus 41 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 117 (273)
T 1ouv_A 41 CFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLG 117 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 3455566666 7778887777776654332 1111122233332 1100 011 1233455566
Q ss_pred cchhc----CCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHH----hCCHHHHHHHHHH
Q 002942 78 DRYKK----CDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAV----LGMHDIAVAHMLE 135 (863)
Q Consensus 78 hRysk----agqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~----Lg~~~~Av~h~l~ 135 (863)
.-|.+ .|....|+.+|++|+..- .....+.||..+.. .++++.|+.+|.+
T Consensus 118 ~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~ 175 (273)
T 1ouv_A 118 GIYHDGKVVTRDFKKAVEYFTKACDLN--------DGDGCTILGSLYDAGRGTPKDLKKALASYDK 175 (273)
T ss_dssp HHHHHCSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 77777 899999999999999741 23467788888888 8999999888765
No 181
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=67.57 E-value=8.7 Score=40.94 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=52.5
Q ss_pred hHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccc------h---hhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 69 YGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSH------I---KDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 69 yAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~------~---edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.+.-+..-|..|.+.|+...|+.||.+|+.+........ + .-.+++.+|..+..+|++++|+.++.+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455566678889999999999999999999876543100 0 025788999999999999999988755
No 182
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=67.35 E-value=6.4 Score=46.55 Aligned_cols=110 Identities=15% Similarity=0.013 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcch------hhHHHH------HHHHHhhhhcc---CCCcchhhHhHHHhhccc
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEP------LHSAVM------LEQASYCYLLS---KPPMLHKYGFHLVLSGDR 79 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~------L~SALL------LEQAA~c~L~~---~ppm~RKyAfhmVLAGhR 79 (863)
+-+..+.++...|.|.+|...|-++...++ ..-|.+ .++|..+|-++ .|-. +.-+..-|.-
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~----~~~~~~lg~~ 510 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE----LAPKLALAAT 510 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----SHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHH
Confidence 345567778888999999988877664322 111111 23444444332 2221 2222344556
Q ss_pred hhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 80 YKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 80 yskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.+.|+... +.+|++|+...-+. ...++.+|+.+..+|++++|+++|.+
T Consensus 511 ~~~~g~~~~-~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~ 559 (681)
T 2pzi_A 511 AELAGNTDE-HKFYQTVWSTNDGV------ISAAFGLARARSAEGDRVGAVRTLDE 559 (681)
T ss_dssp HHHHTCCCT-TCHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHcCChHH-HHHHHHHHHhCCch------HHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 778888888 99999999864321 23679999999999999999999865
No 183
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=67.00 E-value=8.2 Score=43.99 Aligned_cols=58 Identities=12% Similarity=0.037 Sum_probs=47.6
Q ss_pred HHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 72 HLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 72 hmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
-+..-|.-|.+.|+...|+.+|.+|+....+. ...++.+|..+..+|++++|+++|.+
T Consensus 59 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 116 (568)
T 2vsy_A 59 AVARLGRVRWTQQRHAEAAVLLQQASDAAPEH------PGIALWLGHALEDAGQAEAAAAAYTR 116 (568)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455777889999999999999999985432 34678999999999999999988765
No 184
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=66.38 E-value=21 Score=37.10 Aligned_cols=109 Identities=14% Similarity=0.076 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCc--chh--h--HH---HH-----HHHHHhhhhcc---CCCcchhhHhHHHhhc
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGE--EPL--H--SA---VM-----LEQASYCYLLS---KPPMLHKYGFHLVLSG 77 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tse--d~L--~--SA---LL-----LEQAA~c~L~~---~ppm~RKyAfhmVLAG 77 (863)
+.+..+.++...|.+++|-+.|-++... ++. . .| ++ .+.|-.+|-.+ .|. .+.-+..-|
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~----~~~~~~~la 207 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP----TLLLLNGQA 207 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC----CHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC----cHHHHHHHH
Confidence 4556678899999999999999887643 322 1 11 11 24444444332 222 233445567
Q ss_pred cchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHH
Q 002942 78 DRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHM 133 (863)
Q Consensus 78 hRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~ 133 (863)
.-|.+.|+...|..+|++|+....+ .-...+.+|..+..+|+.++++..+
T Consensus 208 ~~~~~~g~~~eA~~~l~~al~~~p~------~~~~l~~l~~~~~~~g~~~eaa~~~ 257 (291)
T 3mkr_A 208 ACHMAQGRWEAAEGVLQEALDKDSG------HPETLINLVVLSQHLGKPPEVTNRY 257 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 7889999999999999999987533 2245788899999999998765433
No 185
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=65.98 E-value=8.1 Score=35.06 Aligned_cols=55 Identities=11% Similarity=0.118 Sum_probs=44.8
Q ss_pred hhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 75 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 75 LAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.-|..|.+.|+...|+.+|.+|+...-. .-..++.+|..+..+|+++.|+.+|.+
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDHY------DARYFLGLGACRQSLGLYEQALQSYSY 77 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3456667889999999999999986432 234678999999999999999988866
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.86 E-value=22 Score=38.02 Aligned_cols=100 Identities=12% Similarity=0.098 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHhHhC-----cch-hhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCc
Q 002942 13 TRCGLWWVEMLKARHQYKDAATVYFRICG-----EEP-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQI 86 (863)
Q Consensus 13 ~R~all~~E~lk~~~~~~eAa~~Lir~ts-----ed~-L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr 86 (863)
.|+....+.++...|.|.+|...|-++-. .|. ...-+ +..-|.-|...|..
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~ 191 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDV-----------------------HLLESKVYHKLRNL 191 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHH-----------------------HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHH-----------------------HHHHHHHHHHhCcH
Confidence 35556667777777888877765544321 111 22222 33334455677888
Q ss_pred HHHHHHHHHHHhhhcCCC-ccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 87 NHAIRTYRSAVSVYKGST-WSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 87 ~hAlRCY~~A~~vY~~~~-W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..|..+|.+|+.+...-. ......-+...+|+.+...|+++.|.++|..
T Consensus 192 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 192 AKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999876533 2234445777889999999999999887755
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=65.81 E-value=5.1 Score=43.71 Aligned_cols=67 Identities=21% Similarity=0.201 Sum_probs=51.1
Q ss_pred hHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCC-------c---cchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 69 YGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGST-------W---SHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 69 yAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~-------W---~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.+.-+..-|..|.+.|+...|+.+|++|+..+.... | ....-.+++.+|..+..+|++++|+.++.+
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 344466678899999999999999999998664310 0 011224778899999999999999998866
No 188
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=65.36 E-value=10 Score=42.49 Aligned_cols=68 Identities=16% Similarity=0.032 Sum_probs=53.6
Q ss_pred hhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccc---------hhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 68 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSH---------IKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 68 KyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~---------~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+++.-+..-|..|.+.|+...|+.+|.+|+.+........ ..--+++.+|..+..+|+++.|+.++.+
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4555666778999999999999999999999877653100 0124778899999999999999988755
No 189
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=64.77 E-value=8.6 Score=35.63 Aligned_cols=54 Identities=9% Similarity=0.097 Sum_probs=44.1
Q ss_pred hccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 76 SGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 76 AGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
-|.-|.+.|+...|+.+|++|+...-.. -..++.+|..+..+|++++|+..|.+
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQALCVLDHYD------SRFFLGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCccc------HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4566678899999999999999874332 24568899999999999999988866
No 190
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=64.07 E-value=7.1 Score=37.32 Aligned_cols=54 Identities=24% Similarity=0.266 Sum_probs=42.2
Q ss_pred ccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcccCC
Q 002942 383 GDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQG 462 (863)
Q Consensus 383 GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~~~~L~p 462 (863)
|..+...|+|+|.+..++. .+|+++.|+.+++- |..+.|+|
T Consensus 30 ~~~~~~~l~L~N~s~~~Va-FKVKTT~p~~y~Vr--------------------------------------P~~GiI~P 70 (147)
T 2cri_A 30 TDVVTTNLKLQNPSDRKVC-FKVKTTAPRRYCVR--------------------------------------PNSGIIDP 70 (147)
T ss_dssp SSCCCEEEEEECCSSSCEE-EEEEESCTTSEEEE--------------------------------------SSEEECCT
T ss_pred CceEEEEEEEECCCCCcEE-EEEECCCCccEEEc--------------------------------------CCCcEECC
Confidence 4567789999999998774 47888888665432 33567999
Q ss_pred CCeEEEEEEEEec
Q 002942 463 ETPLLWPLWYRAA 475 (863)
Q Consensus 463 Ges~~lPlwlra~ 475 (863)
|++..+-|++++.
T Consensus 71 ~~s~~v~V~l~~~ 83 (147)
T 2cri_A 71 GSIVTVSVMLQPF 83 (147)
T ss_dssp TCEEEEEEEECCC
T ss_pred CCeEEEEEEECCC
Confidence 9999999999874
No 191
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=63.26 E-value=8.9 Score=36.31 Aligned_cols=62 Identities=10% Similarity=0.053 Sum_probs=40.9
Q ss_pred cccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCccee-ecCCC
Q 002942 379 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVF-SFPEG 457 (863)
Q Consensus 379 ~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~-~~P~~ 457 (863)
.+..|+...-.|+|+|.|.+|+..=... . + ++... | ...+ -.|..
T Consensus 38 ~v~~~~~~~~~l~I~Ntg~vpa~F~f~~-~-~------~~~~~------~--------------------~~wl~v~P~~ 83 (140)
T 3qbt_B 38 NVKFRQLQKEKFQISNNGQVPCHFSFIP-K-L------NDSQY------C--------------------KPWLRAEPFE 83 (140)
T ss_dssp EECBTCCEEEEEEEEECSSSCEEEEEEC-C-T------TCSSS------S--------------------CTTEEEESCE
T ss_pred eceeeeeeeeEEEEEcCCccceEEEEec-C-C------Cchhh------h--------------------hHhhhcCCcc
Confidence 4677888899999999999998752220 0 0 00000 0 0011 13667
Q ss_pred cccCCCCeEEEEEEEEe
Q 002942 458 ISIQGETPLLWPLWYRA 474 (863)
Q Consensus 458 ~~L~pGes~~lPlwlra 474 (863)
+.|.||++..+.|.+..
T Consensus 84 G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 84 GYLEPNETVDISLDVYV 100 (140)
T ss_dssp EEECTTCEEEEEEEECB
T ss_pred cccCCCCeeEEEEEEEE
Confidence 89999999999999984
No 192
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=62.99 E-value=25 Score=31.51 Aligned_cols=82 Identities=13% Similarity=0.157 Sum_probs=61.3
Q ss_pred CCeEEEEEecCCccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCC
Q 002942 366 LPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFN 445 (863)
Q Consensus 366 ~P~L~v~~~~~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~ 445 (863)
-|.|.+.+. ...-.|+-..+.++|+|.=..|+++..+....|.....
T Consensus 5 ~P~i~I~v~---g~~~v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~------------------------------ 51 (102)
T 2xzz_A 5 QSMLSLTLL---GAAVVGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRP------------------------------ 51 (102)
T ss_dssp -CEEEEEES---SCCCSSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEE------------------------------
T ss_pred CCcEEEEEC---CCcccCCeEEEEEEEECCCCCcccCEEEEEECCCCCcc------------------------------
Confidence 366766654 44466999999999999999999999888777744310
Q ss_pred CCCcceeecCCCcccCCCCeEEEEEEEEecCCceeEEEEEEE
Q 002942 446 KMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIY 487 (863)
Q Consensus 446 ~~~~~v~~~P~~~~L~pGes~~lPlwlra~~~G~~~l~lLfy 487 (863)
..+.+ ..+.||++.++.+-+.....|.+.|-.-|.
T Consensus 52 ----~~~~~---~~v~pg~~~~~~~~~~P~~~G~~~L~a~f~ 86 (102)
T 2xzz_A 52 ----KILNV---GDIGGNETVTLRQSFVPVRPGPRQLIASLD 86 (102)
T ss_dssp ----EEEEE---CCBCTTCEEEEEEEECCCSCSSCCCEEEEE
T ss_pred ----eEEEc---CcCCCCCEEEEEEEEecCcccceEEEEEEE
Confidence 01112 239999999999999999999988755554
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.71 E-value=63 Score=34.34 Aligned_cols=120 Identities=9% Similarity=-0.059 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhC----c-chhhHHHHHHHHHhhhh-------------------ccCCCcchhhH
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICG----E-EPLHSAVMLEQASYCYL-------------------LSKPPMLHKYG 70 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~ts----e-d~L~SALLLEQAA~c~L-------------------~~~ppm~RKyA 70 (863)
+-.-.+.++...|.|.+|...+.++.. - +.-..++.....+.++. ......+-++-
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 345567889999999998887765432 1 11112222222222221 11111122233
Q ss_pred hHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 71 FHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 71 fhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.+.-| |.-|...|+..-|+.+|.+++....+..=....--++..+|+.+..+|+++.|...+-.
T Consensus 137 ~~~~l-a~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 200 (434)
T 4b4t_Q 137 LSIKL-ATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTA 200 (434)
T ss_dssp HHHHH-HHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHH-HHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 44444 56678889999999999999998876542222223677889999999999999866533
No 194
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=61.91 E-value=14 Score=36.44 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=46.2
Q ss_pred HHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 73 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 73 mVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+..-|.-|...|+...|+.+|.+|+...... ..+++.+|..+..+|++++|++.|.+
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~ 102 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQAGNFDAAYEAFDS 102 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3444666677899999999999999985442 34778999999999999999988765
No 195
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=61.06 E-value=43 Score=34.68 Aligned_cols=73 Identities=14% Similarity=0.157 Sum_probs=48.7
Q ss_pred eeecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 002942 214 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 293 (863)
Q Consensus 214 ~~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i 293 (863)
.++.||.+.+.+.+.|=++-.+.+ .+++..+.+..... . +. ......+
T Consensus 91 sv~rGE~~~l~~~V~Ny~~~~~~v-----~V~l~~~~~~~~~~-------------~--~~------------~~~~~~v 138 (252)
T 3hrz_B 91 SVVKNEQVEIRAILHNYVNEDIYV-----RVELLYNPAFCSAS-------------T--KG------------QRYRQQF 138 (252)
T ss_dssp CEETTCCEEEEEEEEECSSSCEEE-----EEEECCCTTEEESC-------------C--SS------------CCEEEEE
T ss_pred EEeeCCEEEEEEEEEcccCceEEE-----EEEEEcCCceEeec-------------C--CC------------CceEEEE
Confidence 466899999999999999876554 23333221110000 0 00 0012479
Q ss_pred EECCCceEEEEEEEEeCceeEEEEE
Q 002942 294 SLGGAETILVQLMVTPKVEGILKIV 318 (863)
Q Consensus 294 ~L~p~etk~V~L~v~P~~~G~L~I~ 318 (863)
.+.+++.+.+.+.++|.+.|.+.|+
T Consensus 139 ~v~a~~~~~v~f~i~p~~~G~~~i~ 163 (252)
T 3hrz_B 139 PIKALSSRAVPFVIVPLEQGLHDVE 163 (252)
T ss_dssp EECTTEEEEEEEEEEECSSEEEEEE
T ss_pred EECCCCeEEEEEEEEeccCCcEEEE
Confidence 9999999999999999999987664
No 196
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=59.00 E-value=23 Score=45.70 Aligned_cols=47 Identities=19% Similarity=0.098 Sum_probs=36.3
Q ss_pred hhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 75 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 75 LAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
--|++|...|...-|+.||.+|- -...+|+-+..+|+++.|+..+.+
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA~--------------ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNVS--------------NFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhh--------------HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 47888888888888888888872 346788888888888888876644
No 197
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=57.95 E-value=7.2 Score=38.09 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=46.1
Q ss_pred HHhhccchhcCCCcHHHHHHHHHHHhhhcCCC--cc--------chhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 73 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGST--WS--------HIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 73 mVLAGhRyskagqr~hAlRCY~~A~~vY~~~~--W~--------~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
++.-|..+-+.|+...|+.+|.+|+...-... |. .+...+++.+|..+..+|+++.|+.+|.+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 79 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45567778889999999999999998743211 10 01223444599999999999999988755
No 198
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=57.74 E-value=12 Score=38.60 Aligned_cols=58 Identities=16% Similarity=0.059 Sum_probs=48.3
Q ss_pred HHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 72 HLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 72 hmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
-+..-|..|.+.|+..-|+.+|.+|+...... -.+++.+|..+..+|++++|++++.+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~ 63 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRR 63 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 34556788889999999999999999985442 24678899999999999999988866
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=57.72 E-value=36 Score=38.82 Aligned_cols=104 Identities=14% Similarity=-0.007 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHH
Q 002942 12 ATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIR 91 (863)
Q Consensus 12 A~R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlR 91 (863)
.+++.-..+..+..+|.|.+|...+- +|--.+...-+|-..--|..+---|.-|...|....|..
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~---------------~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~ 414 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYAR---------------RMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHG 414 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHH---------------HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHH---------------HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 44455556677777788887766443 333333334455555666667667777888999999999
Q ss_pred HHHHHHhhhcCCCccchhhh-----HHHHHHHHHHHhCCHHHHHHHH
Q 002942 92 TYRSAVSVYKGSTWSHIKDH-----VHFHIGQWYAVLGMHDIAVAHM 133 (863)
Q Consensus 92 CY~~A~~vY~~~~W~~~edH-----I~~tLGrq~~~Lg~~~~Av~h~ 133 (863)
.|.+|+.+++.. +=.|| +.-.|++....++.++.|-..+
T Consensus 415 ~~~~Al~i~~~~---lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~ 458 (490)
T 3n71_A 415 MICKAYAILLVT---HGPSHPITKDLEAMRMQTEMELRMFRQNEFMY 458 (490)
T ss_dssp HHHHHHHHHHHH---TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998751 11455 3345667777778787775444
No 200
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=55.22 E-value=70 Score=31.00 Aligned_cols=115 Identities=11% Similarity=0.050 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhcc-CCCcchhh------------HhHHHhhccch
Q 002942 14 RCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLS-KPPMLHKY------------GFHLVLSGDRY 80 (863)
Q Consensus 14 R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~-~ppm~RKy------------AfhmVLAGhRy 80 (863)
.+....+.++...+.+.+|...|-++...+...+ +-..|.+|... .++...|. +.-+..-|.-|
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a---~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y 95 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDA---LALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVL 95 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHH---HHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455666777778889999888888765432111 11223333321 00111111 11222334556
Q ss_pred hc----CCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHH----hCCHHHHHHHHHH
Q 002942 81 KK----CDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAV----LGMHDIAVAHMLE 135 (863)
Q Consensus 81 sk----agqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~----Lg~~~~Av~h~l~ 135 (863)
.. .+..+.|+.+|++|...-. +.-.-.-.+.||..+.. .++++.|+.+|.+
T Consensus 96 ~~g~g~~~d~~~A~~~~~~A~~~~~----~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 96 VNRQAGATDVAHAITLLQDAARDSE----SDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp TCGGGSSCCHHHHHHHHHHHTSSTT----SHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HcCCCCccCHHHHHHHHHHHHHcCC----CcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 55 6778888999988885311 00002467889999988 8899999998866
No 201
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=54.87 E-value=26 Score=32.47 Aligned_cols=82 Identities=20% Similarity=0.237 Sum_probs=50.9
Q ss_pred eEeEEEEEEeCCCccEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCccccccCCccCccC
Q 002942 707 EVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVS 786 (863)
Q Consensus 707 ~vpv~l~l~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 786 (863)
.+.++|++.|.++..+.+.+.+... + |+.+... .|..+.+=+ ...
T Consensus 19 ~v~~~ltv~N~s~~~v~l~f~Sgq~-------------------------~------Df~v~d~-~G~~VwrwS---~~~ 63 (120)
T 3isy_A 19 QIKFNMSLKNQSERAIEFQFSTGQK-------------------------F------ELVVYDS-EHKERYRYS---KEK 63 (120)
T ss_dssp CEEEEEEEEECSSSCEEEEESSSCC-------------------------E------EEEEECT-TCCEEEETT---TTC
T ss_pred eEEEEEEEEcCCCCcEEEEeCCCCE-------------------------E------EEEEECC-CCCEEEEcc---ccc
Confidence 7889999999999998888775432 1 3333321 122121000 022
Q ss_pred ceEEeccccceEEeCCCceeEEEeEEE-EecceeeecCCcEEEEEE
Q 002942 787 PFIWSGSSASSVRLQPMSTTDIAMKVC-LFSPGTYDLSNYALNWKL 831 (863)
Q Consensus 787 ~f~W~g~~~~~~~l~p~~~~~~~L~~~-~~~~GvYdl~~~~l~~~~ 831 (863)
-|++ ......|+|||+......|- .+.||.| .|.+.+
T Consensus 64 ~FtQ---a~~~~tl~pGE~~~f~~~w~~~~~pG~Y-----tl~a~l 101 (120)
T 3isy_A 64 MFTQ---AFQNLTLESGETYDFSDVWKEVPEPGTY-----EVKVTF 101 (120)
T ss_dssp CCCC---CCEEEEECTTCEEEEEEEESSCCCSEEE-----EEEEEE
T ss_pred hhhh---hhceEEECCCCEEEEEEEeCCCCCCccE-----EEEEEE
Confidence 2222 44577899999999999998 5677765 555555
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=54.42 E-value=22 Score=30.14 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHH
Q 002942 14 RCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTY 93 (863)
Q Consensus 14 R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY 93 (863)
++-+..+.++...|.|.+|-..|-++-..++ . ++--+..-|.-|.+.|+...|+.+|
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------------------~----~~~a~~~lg~~~~~~g~~~~A~~~~ 64 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDP-------------------D----YVGTYYHLGKLYERLDRTDDAIDTY 64 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------------------T----CTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------C----cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445667778888999999887766554333 1 0111223356677889999999999
Q ss_pred HHHHhhhcCC
Q 002942 94 RSAVSVYKGS 103 (863)
Q Consensus 94 ~~A~~vY~~~ 103 (863)
++|+.+....
T Consensus 65 ~~al~l~~~~ 74 (100)
T 3ma5_A 65 AQGIEVAREE 74 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhhhhcC
Confidence 9999886543
No 203
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=54.02 E-value=6.8 Score=33.86 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=29.8
Q ss_pred chhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhc
Q 002942 66 LHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYK 101 (863)
Q Consensus 66 ~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~ 101 (863)
+..-|..+|--|-.+.++|...-|++||+.|++.+.
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~ 42 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLS 42 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 344566677777889999999999999999998753
No 204
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=53.26 E-value=26 Score=45.32 Aligned_cols=97 Identities=13% Similarity=0.128 Sum_probs=64.5
Q ss_pred HHHHHhccchHHHHHHHHhHhCcchhhHHHHH------HHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHH
Q 002942 20 VEMLKARHQYKDAATVYFRICGEEPLHSAVML------EQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTY 93 (863)
Q Consensus 20 ~E~lk~~~~~~eAa~~Lir~tsed~L~SALLL------EQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY 93 (863)
|.++-..|+|.||...|-+...-+. -..+++ +.|.-.+-+...| .-|.-+ |.-|.+.|+.+-|+.||
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~~~-A~~VLie~i~nldrAiE~Aervn~p-----~vWsqL-AKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVNTS-AVQVLIEHIGNLDRAYEFAERCNEP-----AVWSQL-AKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCHHH-HHHHHHHHHhhHHHHHHHHHhcCCH-----HHHHHH-HHHHHhCCCHHHHHHHH
Confidence 5666778999999998888642111 123344 4444433333332 334433 66788899999999999
Q ss_pred HHHHhhhcCCCccchhhhH-HHHHHHHHHHhCCHHHHHHHHHH
Q 002942 94 RSAVSVYKGSTWSHIKDHV-HFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 94 ~~A~~vY~~~~W~~~edHI-~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
.+| +|+- ++.+|.-+..+|++++|++.|..
T Consensus 1129 iKA------------dD~say~eVa~~~~~lGkyEEAIeyL~m 1159 (1630)
T 1xi4_A 1129 IKA------------DDPSSYMEVVQAANTSGNWEELVKYLQM 1159 (1630)
T ss_pred Hhc------------CChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 886 3322 24589999999999999998854
No 205
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=52.79 E-value=23 Score=29.88 Aligned_cols=51 Identities=24% Similarity=0.320 Sum_probs=25.8
Q ss_pred cchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHH
Q 002942 78 DRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHML 134 (863)
Q Consensus 78 hRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l 134 (863)
.-|...|....|+..|.+++...... ....+.+|..+...|++++|++.+.
T Consensus 9 ~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~ 59 (136)
T 2fo7_A 9 NAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQ 59 (136)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHcCCcc------hhHHHHHHHHHHHhcCHHHHHHHHH
Confidence 33444555555666666655543211 1234455555555566666555543
No 206
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.39 E-value=87 Score=35.02 Aligned_cols=101 Identities=16% Similarity=0.055 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHhHh-----Ccch-hhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCC
Q 002942 12 ATRCGLWWVEMLKARHQYKDAATVYFRIC-----GEEP-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQ 85 (863)
Q Consensus 12 A~R~all~~E~lk~~~~~~eAa~~Lir~t-----sed~-L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagq 85 (863)
-.|.+...+.++...|.|.+|+..|-.+. +.|. ...-+.|||+-.|+.....+.
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~-------------------- 195 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQ-------------------- 195 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHH--------------------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHH--------------------
Confidence 35778888999999999999999988764 2444 778899999999887554332
Q ss_pred cHHHHHHHHHHHh-hhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 86 INHAIRTYRSAVS-VYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 86 r~hAlRCY~~A~~-vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.-.+++|.. .+....=..+.-++..-.|+.+..-+++.+|.++|.+
T Consensus 196 ---a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e 243 (445)
T 4b4t_P 196 ---ATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQE 243 (445)
T ss_dssp ---HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2222333221 2222111223334556667777777777777766655
No 207
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=48.86 E-value=23 Score=38.46 Aligned_cols=59 Identities=10% Similarity=-0.086 Sum_probs=44.2
Q ss_pred ccchhcCCCcHHHHHHHHHHHhhhcCCCccchhh---hHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 77 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKD---HVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 77 GhRyskagqr~hAlRCY~~A~~vY~~~~W~~~ed---HI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
|.-|..-|+.+-|+.||.+|+.+++...-...+- -....||..+..+|++++|+.++-.
T Consensus 58 g~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~k 119 (472)
T 4g1t_A 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDK 119 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5667788999999999999999987543221111 1245689999999999999877644
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=48.72 E-value=27 Score=29.93 Aligned_cols=68 Identities=10% Similarity=0.069 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHH
Q 002942 14 RCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTY 93 (863)
Q Consensus 14 R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY 93 (863)
++-+..+.++...|.|.+|-..|-++-..++ .++--+..-|.-|.+.|+...|+.+|
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----------------------~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDP-----------------------TYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------------TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-----------------------CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3455667788888889888877766543322 11111233466677889999999999
Q ss_pred HHHHhhhcCCC
Q 002942 94 RSAVSVYKGST 104 (863)
Q Consensus 94 ~~A~~vY~~~~ 104 (863)
.+|+.+....+
T Consensus 77 ~~al~~~~~~~ 87 (115)
T 2kat_A 77 ESGLAAAQSRG 87 (115)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHhccccc
Confidence 99999876543
No 209
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=48.42 E-value=21 Score=40.16 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=47.9
Q ss_pred HHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 73 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 73 mVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+..-|..|.+.|+...|+.+|.+|+...... -..++.+|..+..+|++++|++.+.+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~ 65 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATR 65 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4456888899999999999999999985432 34678899999999999999988865
No 210
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=48.20 E-value=9.5 Score=33.00 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=32.3
Q ss_pred CcchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhc
Q 002942 64 PMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYK 101 (863)
Q Consensus 64 pm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~ 101 (863)
.+++.-|.-+|--|-.+.++|..+-|++||++|++.+.
T Consensus 13 ~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~ 50 (83)
T 2w2u_A 13 VMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLA 50 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 34667777788888899999999999999999998754
No 211
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=48.04 E-value=6.5 Score=34.59 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=31.3
Q ss_pred chhhHhHHHhhccchhcC---CCcHHHHHHHHHHHhhhc
Q 002942 66 LHKYGFHLVLSGDRYKKC---DQINHAIRTYRSAVSVYK 101 (863)
Q Consensus 66 ~RKyAfhmVLAGhRyska---gqr~hAlRCY~~A~~vY~ 101 (863)
..|-||++|-.|-....+ |++.+|+-+|++..+-+.
T Consensus 12 ~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~ 50 (89)
T 3eab_A 12 FHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELE 50 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHH
Confidence 347799999999999999 999999999999886543
No 212
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=47.59 E-value=29 Score=32.07 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=45.3
Q ss_pred HHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHH-HHHhCCH--HHHHHHHHH
Q 002942 73 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQW-YAVLGMH--DIAVAHMLE 135 (863)
Q Consensus 73 mVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq-~~~Lg~~--~~Av~h~l~ 135 (863)
+..-|.-|...|+...|+.+|.+|+.+.... ..+.+.+|.. +...|++ +.|+..|..
T Consensus 47 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~l~~~~~~~~~~~A~~~~~~ 106 (177)
T 2e2e_A 47 WALLGEYYLWQNDYSNSLLAYRQALQLRGEN------AELYAALATVLYYQASQHMTAQTRAMIDK 106 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC------HHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 3445666778889999999999999987543 3467889998 7889998 999987755
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=41.63 E-value=57 Score=36.33 Aligned_cols=77 Identities=10% Similarity=-0.005 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHH
Q 002942 11 NATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAI 90 (863)
Q Consensus 11 ~A~R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAl 90 (863)
+.+++.-..+..+..+|.|.+|...+ ++|--.|...-+|...-.|..|---|.-|...|+..-|+
T Consensus 327 ~~~~~~~~L~~~y~~~g~~~eA~~~~---------------~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~ 391 (429)
T 3qwp_A 327 YQLKVLDCAMDACINLGLLEEALFYG---------------TRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAM 391 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHH---------------HHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHH---------------HHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 44555556677777888888877644 333333444456777777888888888888999999999
Q ss_pred HHHHHHHhhhcC
Q 002942 91 RTYRSAVSVYKG 102 (863)
Q Consensus 91 RCY~~A~~vY~~ 102 (863)
..|++|+.+++.
T Consensus 392 ~~~~~Al~i~~~ 403 (429)
T 3qwp_A 392 KNLRLAFDIMRV 403 (429)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 214
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=39.82 E-value=71 Score=34.93 Aligned_cols=77 Identities=14% Similarity=0.137 Sum_probs=47.9
Q ss_pred cCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCccc
Q 002942 381 YAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISI 460 (863)
Q Consensus 381 l~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~~~~L 460 (863)
.-|-.-+++++++|.|..|+.-=...+..-+|+-.+- ...+...|..+. + ..-+.+..+..|
T Consensus 261 vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~-~~~~~~~P~~ll--------a---------~~gL~vsd~~pI 322 (382)
T 1yew_A 261 VPGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDV-YKDTTGYPEDLL--------A---------EDGLSVSDNSPL 322 (382)
T ss_dssp SSCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTT-CCCCSCCCGGGE--------E---------TTCEEESCCSCB
T ss_pred cCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcc-cccCCCChHHhh--------c---------cCCceeCCCCCc
Confidence 3477789999999999999877677777666653211 112222333221 0 000112235569
Q ss_pred CCCCeEEEEEEEEec
Q 002942 461 QGETPLLWPLWYRAA 475 (863)
Q Consensus 461 ~pGes~~lPlwlra~ 475 (863)
+|||++++.+-.+..
T Consensus 323 ~PGETr~~~v~a~da 337 (382)
T 1yew_A 323 APGETRTVDVTASDA 337 (382)
T ss_dssp CTTCEEEEEEEEECH
T ss_pred CCCceeEEEEEeehH
Confidence 999999999999854
No 215
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.30 E-value=13 Score=34.20 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=31.1
Q ss_pred hhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhc
Q 002942 67 HKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYK 101 (863)
Q Consensus 67 RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~ 101 (863)
.|-||-+|-.|-.+...|++.+|+-+|++..+-+.
T Consensus 19 h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe 53 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLL 53 (116)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999887554
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=39.26 E-value=55 Score=36.63 Aligned_cols=75 Identities=8% Similarity=-0.026 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHH
Q 002942 13 TRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRT 92 (863)
Q Consensus 13 ~R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRC 92 (863)
.++.-..+..+..+|.|.+|...+- +|-..+...-+|...--|..|---|.-|...|+...|...
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~---------------~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~ 404 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQ---------------KIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKA 404 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH---------------HHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHH---------------HHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 3444456677777788887766444 3333333344555556666666677778889999999999
Q ss_pred HHHHHhhhcC
Q 002942 93 YRSAVSVYKG 102 (863)
Q Consensus 93 Y~~A~~vY~~ 102 (863)
|.+|+.+++.
T Consensus 405 ~~~Al~i~~~ 414 (433)
T 3qww_A 405 LKKAIAIMEV 414 (433)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 217
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=38.67 E-value=22 Score=30.52 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=28.8
Q ss_pred chhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhc
Q 002942 66 LHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYK 101 (863)
Q Consensus 66 ~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~ 101 (863)
+..-|..++--|-...++|...-|++||..|.+.|-
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~ 44 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLM 44 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 334455566667788999999999999999998764
No 218
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=38.20 E-value=1.4e+02 Score=32.77 Aligned_cols=45 Identities=16% Similarity=-0.017 Sum_probs=24.2
Q ss_pred CCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHH----hCCHHHHHHHHHH
Q 002942 83 CDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAV----LGMHDIAVAHMLE 135 (863)
Q Consensus 83 agqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~----Lg~~~~Av~h~l~ 135 (863)
.+....|+.+|++|... + .....+.||..+.. .++.+.|+++|.+
T Consensus 380 ~~~~~~A~~~~~~A~~~----~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 380 KKDEQQAAIWMRKAAEQ----G----LSAAQVQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 44555555555555542 1 12345556666665 5666666665544
No 219
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=37.22 E-value=1.3e+02 Score=30.88 Aligned_cols=81 Identities=10% Similarity=0.090 Sum_probs=55.9
Q ss_pred cCCccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeec
Q 002942 375 PLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSF 454 (863)
Q Consensus 375 ~~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~ 454 (863)
.+|..+..||...+.+.+.|-...+++ +++.....+-+++...... ...+
T Consensus 87 ~LP~sv~rGE~~~l~~~V~Ny~~~~~~-v~V~l~~~~~~~~~~~~~~------------------------~~~~----- 136 (252)
T 3hrz_B 87 QMPYSVVKNEQVEIRAILHNYVNEDIY-VRVELLYNPAFCSASTKGQ------------------------RYRQ----- 136 (252)
T ss_dssp CCCSCEETTCCEEEEEEEEECSSSCEE-EEEEECCCTTEEESCCSSC------------------------CEEE-----
T ss_pred CCCcEEeeCCEEEEEEEEEcccCceEE-EEEEEEcCCceEeecCCCC------------------------ceEE-----
Confidence 589999999999999999999876653 4555544322322111000 0001
Q ss_pred CCCcccCCCCeEEEEEEEEecCCceeEEEEEEE
Q 002942 455 PEGISIQGETPLLWPLWYRAAVPGKISLSITIY 487 (863)
Q Consensus 455 P~~~~L~pGes~~lPlwlra~~~G~~~l~lLfy 487 (863)
...|.+|++..+++.+++...|.+.+.+-..
T Consensus 137 --~v~v~a~~~~~v~f~i~p~~~G~~~i~v~A~ 167 (252)
T 3hrz_B 137 --QFPIKALSSRAVPFVIVPLEQGLHDVEIKAS 167 (252)
T ss_dssp --EEEECTTEEEEEEEEEEECSSEEEEEEEEEE
T ss_pred --EEEECCCCeEEEEEEEEeccCCcEEEEEEEE
Confidence 2347899999999999988999999888765
No 220
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=36.36 E-value=20 Score=31.10 Aligned_cols=34 Identities=6% Similarity=0.103 Sum_probs=28.5
Q ss_pred hhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhc
Q 002942 68 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYK 101 (863)
Q Consensus 68 KyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~ 101 (863)
..|.-+|-.|-.+.++|...-|+.||.+|++.|-
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll 47 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLL 47 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3466677777788999999999999999998764
No 221
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=35.02 E-value=1.4e+02 Score=33.22 Aligned_cols=111 Identities=8% Similarity=0.130 Sum_probs=68.4
Q ss_pred HHHHHHHHhccchHHHHHHHHhHhCcch-------hhHHHH------HHHHHhhhhcc--CCCcchhhHhHHHhhccchh
Q 002942 17 LWWVEMLKARHQYKDAATVYFRICGEEP-------LHSAVM------LEQASYCYLLS--KPPMLHKYGFHLVLSGDRYK 81 (863)
Q Consensus 17 ll~~E~lk~~~~~~eAa~~Lir~tsed~-------L~SALL------LEQAA~c~L~~--~ppm~RKyAfhmVLAGhRys 81 (863)
+.++.++...|.+.+|-..|-++-..+. +.-+.+ ++.|--+|-++ .+|. .+..++-.|.--|.
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~--~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART--RHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC--CTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC--chHHHHHHHHHHHH
Confidence 3455667778889988888877654221 111111 23333333332 2332 23333434444466
Q ss_pred cCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 82 KCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 82 kagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+.|....|..+|.+|+..+-.. -.+...+|.....+|+.++|...|-+
T Consensus 403 ~~~~~~~A~~~~e~al~~~p~~------~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HcCChhHHHHHHHHHHHHCCCC------HHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 7889999999999999887432 24567778888888999998876654
No 222
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=34.58 E-value=31 Score=33.35 Aligned_cols=44 Identities=25% Similarity=0.403 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhC-----------CHHHHHHHHHH
Q 002942 86 INHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLG-----------MHDIAVAHMLE 135 (863)
Q Consensus 86 r~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg-----------~~~~Av~h~l~ 135 (863)
.+-|+.||++|+.+--. ..-.++.||-.+..+| ++++|++.|.+
T Consensus 62 ~~eAi~~le~AL~ldP~------~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~k 116 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPK------KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQ 116 (158)
T ss_dssp HHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcC------cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHH
Confidence 67899999999987322 2235688888888774 89999998866
No 223
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=34.57 E-value=88 Score=36.72 Aligned_cols=59 Identities=12% Similarity=-0.033 Sum_probs=45.9
Q ss_pred hHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 71 FHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 71 fhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
--+..-|.-|.+.|+...|+.+|.+|+...-+. --.++.+|..+..+|++++|+++|.+
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~ 492 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWR------WRLVWYRAVAELLTGDYDSATKHFTE 492 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334455677778899999999999999874332 23678899999999999999988765
No 224
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=33.92 E-value=2.7e+02 Score=30.43 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=29.2
Q ss_pred CcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHH----hCCHHHHHHHHHH
Q 002942 85 QINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAV----LGMHDIAVAHMLE 135 (863)
Q Consensus 85 qr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~----Lg~~~~Av~h~l~ 135 (863)
..+.|+++|++|... + .....+.||..+.. .++++.|+.+|.+
T Consensus 346 ~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 392 (490)
T 2xm6_A 346 EHKKAVEWFRKAAAK----G----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRK 392 (490)
T ss_dssp HHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 456677777777653 1 23466778888877 7888888877755
No 225
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=33.84 E-value=23 Score=31.12 Aligned_cols=39 Identities=5% Similarity=0.081 Sum_probs=31.8
Q ss_pred CCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhc
Q 002942 62 KPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYK 101 (863)
Q Consensus 62 ~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~ 101 (863)
+++|. .-|..+|--|-.+.++|...-|++||..|++.|.
T Consensus 8 ~~~~l-~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~ 46 (93)
T 1wfd_A 8 QDSDS-TAAVAVLKRAVELDAESRYQQALVCYQEGIDMLL 46 (93)
T ss_dssp CCCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34444 4567788888999999999999999999998764
No 226
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=33.00 E-value=65 Score=26.33 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=39.4
Q ss_pred HHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHHHHHH
Q 002942 18 WWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAV 97 (863)
Q Consensus 18 l~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~ 97 (863)
-.+.++-..|.|.+|...+-++-..++- .+. + -+..-|.-|.+.|+...|+.+|.+|+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~------------------~---~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPV-GKD------------------E---AYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-THH------------------H---HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHH------------------H---HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455666778888888777665543320 111 0 11222444557788999999999999
Q ss_pred hhhcC
Q 002942 98 SVYKG 102 (863)
Q Consensus 98 ~vY~~ 102 (863)
...-+
T Consensus 63 ~~~p~ 67 (99)
T 2kc7_A 63 ELNPD 67 (99)
T ss_dssp HHCTT
T ss_pred hcCCC
Confidence 88644
No 227
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=32.03 E-value=1.5e+02 Score=26.65 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=41.4
Q ss_pred CceeEeEEEEEEeCCCccEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCccccccCCccC
Q 002942 704 SFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLE 783 (863)
Q Consensus 704 ~~c~vpv~l~l~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 783 (863)
..=+=--+|.|.|.+..+..+.|...+.
T Consensus 29 G~I~N~Ytlki~Nkt~~~~~~~l~v~g~---------------------------------------------------- 56 (118)
T 2r39_A 29 GEVENTYTLKVINKTQQVQEYNLDVKGL---------------------------------------------------- 56 (118)
T ss_dssp CSEEEEEEEEEEECSSSCEEEEEEEESC----------------------------------------------------
T ss_pred CeEEEEEEEEEEECCCCCEEEEEEEeCC----------------------------------------------------
Confidence 3444557899999999887777776431
Q ss_pred ccCceEEeccccceEEeCCCceeEEEeEEEEe
Q 002942 784 SVSPFIWSGSSASSVRLQPMSTTDIAMKVCLF 815 (863)
Q Consensus 784 ~~~~f~W~g~~~~~~~l~p~~~~~~~L~~~~~ 815 (863)
.. +.|.|.. .+.|+|+++.++++.+...
T Consensus 57 -~~-l~~~g~~--~i~v~~g~~~~~~v~v~~~ 84 (118)
T 2r39_A 57 -ND-VSWYGKQ--TIQVEPGEVLNLPMSLGAD 84 (118)
T ss_dssp -SS-CEEESCC--EEEECTTCEEEEEEEEEEC
T ss_pred -cc-cEEeCCC--cEEECCCCEEEEEEEEEEC
Confidence 00 4677743 5999999999999988773
No 228
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=31.82 E-value=82 Score=37.73 Aligned_cols=75 Identities=11% Similarity=-0.012 Sum_probs=50.9
Q ss_pred ceeecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeee
Q 002942 213 NICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 292 (863)
Q Consensus 213 ~~~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~ 292 (863)
+-++.||.+.+.+.+.|=++-++.+ .+++...++..... .. -....
T Consensus 162 ~~v~~GD~~~i~~~V~N~~~~~~~v-----~v~l~~~~~~~~~~---------------~~--------------~~~~~ 207 (767)
T 4fxk_B 162 MSVRRFEQLELRPVLYNYLDKNLTV-----SVHVSPVEGLCLAG---------------GG--------------GLAQQ 207 (767)
T ss_dssp SCEETTCEEEECCEEEECSSSCEEE-----EEEECCCTTEECSS---------------SS--------------CCCEE
T ss_pred CeeccCCEEEEEEEEEECCCCCEEE-----EEEEEecCCeEEec---------------CC--------------ceeEE
Confidence 3577899999999999998876654 22333221110000 00 01247
Q ss_pred EEECCCceEEEEEEEEeCceeEEEEEEEE
Q 002942 293 ISLGGAETILVQLMVTPKVEGILKIVGVR 321 (863)
Q Consensus 293 i~L~p~etk~V~L~v~P~~~G~L~I~Gv~ 321 (863)
+.+.+++++.|.+.+.|...|.+.|.=..
T Consensus 208 ~~v~a~~~~~v~f~i~~~~~G~~~i~v~A 236 (767)
T 4fxk_B 208 VLVPAGSARPVAFSVVPTAAAAVSLKVVA 236 (767)
T ss_dssp EEECSSCEEECCEEEEECSCSEEEEEEEE
T ss_pred EEEcCCCeEEEEEEEEECccCcEEEEEEE
Confidence 99999999999999999999987775443
No 229
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=31.60 E-value=92 Score=26.63 Aligned_cols=67 Identities=10% Similarity=0.056 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHhHhCcchhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHHHHH
Q 002942 14 RCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTY 93 (863)
Q Consensus 14 R~all~~E~lk~~~~~~eAa~~Lir~tsed~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAlRCY 93 (863)
++-+..+.++...|.|.+|...|-++-..++ .. +--+..-|.-|.+.|+..-|+.+|
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--------------------~~---~~~~~~l~~~~~~~g~~~~A~~~~ 84 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFP--------------------NH---QALRVFYAMVLYNLGRYEQGVELL 84 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------TC---HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------Cc---hHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4556667788888888888887766554332 00 111122345566788899999999
Q ss_pred HHHHhhhcCC
Q 002942 94 RSAVSVYKGS 103 (863)
Q Consensus 94 ~~A~~vY~~~ 103 (863)
++|+....+.
T Consensus 85 ~~al~~~p~~ 94 (117)
T 3k9i_A 85 LKIIAETSDD 94 (117)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHhCCCc
Confidence 9999876553
No 230
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=30.43 E-value=1.6e+02 Score=26.81 Aligned_cols=67 Identities=13% Similarity=0.114 Sum_probs=45.0
Q ss_pred eecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE-
Q 002942 215 CVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI- 293 (863)
Q Consensus 215 ~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i- 293 (863)
.+.|+.+.+.+.++|.=...-.=.++.|... + -.+....+
T Consensus 15 ~~~~~~~ti~atVkN~G~~~a~~~~V~ly~~-----g----------------------------------~~v~t~~v~ 55 (114)
T 2l0d_A 15 VVPNTVNTMTATIENQGNKDSTSFNVSLLVD-----G----------------------------------IVVDTQTVT 55 (114)
T ss_dssp ECTTSEEEEEEEEEECSSSCBCCEEEEEEET-----T----------------------------------EEEEEEEES
T ss_pred cCCCCeEEEEEEEEECCCCCCCCEEEEEEEC-----C----------------------------------EEEcceecc
Confidence 5579999999999997655433333333320 0 00122344
Q ss_pred EECCCceEEEEEEEEeC-ceeEEEEEEE
Q 002942 294 SLGGAETILVQLMVTPK-VEGILKIVGV 320 (863)
Q Consensus 294 ~L~p~etk~V~L~v~P~-~~G~L~I~Gv 320 (863)
.|.++++++|.++.+|. ..|...|.-+
T Consensus 56 ~LaaG~s~tv~~~w~~~~~~G~ytl~a~ 83 (114)
T 2l0d_A 56 SLESENSTNVDFHWTLDGTANSYTLTVN 83 (114)
T ss_dssp CBCBTCEEEEEEEEECCCSCSEEEEEEE
T ss_pred cccCCCEEEEEEEEeecCcCceEEEEEE
Confidence 48899999999999999 5899888643
No 231
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=30.36 E-value=64 Score=31.70 Aligned_cols=60 Identities=27% Similarity=0.303 Sum_probs=42.5
Q ss_pred CceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEEECC
Q 002942 218 GEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGG 297 (863)
Q Consensus 218 gEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i~L~p 297 (863)
+-.+.+.+.++||-.+||.+..|....+.... ... +- .....++|++
T Consensus 61 ~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~--~la--------------sG-----------------~s~~~~tIpa 107 (174)
T 1yyc_A 61 GVDYHAKVSVKNPYSQSIPICQISYILKSATR--TIA--------------SG-----------------TIPDPGSLVG 107 (174)
T ss_dssp SEEEEEEEEEEECSSSCCBCCSEEEEEEESSS--CEE--------------EE-----------------EESCCCBCCS
T ss_pred eEEEEEEEEEECCCCCCccccceEEEEEECCE--EEE--------------EE-----------------ecCCCceECC
Confidence 45688999999999999999999988764422 000 00 0113578888
Q ss_pred CceEEEEEEEEeC
Q 002942 298 AETILVQLMVTPK 310 (863)
Q Consensus 298 ~etk~V~L~v~P~ 310 (863)
..+.++.+.++-.
T Consensus 108 ~g~~~v~Vpv~v~ 120 (174)
T 1yyc_A 108 SGTTVLDVPVKVA 120 (174)
T ss_dssp SEEEEEEEEEEES
T ss_pred CCcEEEEEEEEEE
Confidence 8888888877764
No 232
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=29.83 E-value=26 Score=32.20 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=28.7
Q ss_pred hhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhc
Q 002942 67 HKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYK 101 (863)
Q Consensus 67 RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~ 101 (863)
..-|..+|.-|-.+.++|...-|+++|..|++.|-
T Consensus 15 l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~ 49 (117)
T 2cpt_A 15 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFL 49 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 34555666677788999999999999999998764
No 233
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=28.39 E-value=2.4e+02 Score=25.30 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=24.6
Q ss_pred cccCCCCeEEEEEEEEec----CCceeEEEEEEE
Q 002942 458 ISIQGETPLLWPLWYRAA----VPGKISLSITIY 487 (863)
Q Consensus 458 ~~L~pGes~~lPlwlra~----~~G~~~l~lLfy 487 (863)
..++||+..++|+.++.+ ..|.+.+.|-++
T Consensus 67 i~v~~g~~~~~~v~v~~~~~~~~~~~~~i~f~v~ 100 (118)
T 2r39_A 67 IQVEPGEVLNLPMSLGADPDKLNSAITTIQFILT 100 (118)
T ss_dssp EEECTTCEEEEEEEEEECGGGCSSSEEEEEEEEE
T ss_pred EEECCCCEEEEEEEEEEChHHccCCceeEEEEEE
Confidence 458899999999999987 246778888876
No 234
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=26.80 E-value=3.7e+02 Score=34.88 Aligned_cols=80 Identities=8% Similarity=0.025 Sum_probs=56.1
Q ss_pred cCCccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeec
Q 002942 375 PLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSF 454 (863)
Q Consensus 375 ~~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~ 454 (863)
.+|..+..||...+.+.+.|-...++ .++|.....+-+++...... .
T Consensus 774 ~LP~sv~rGE~~~l~~~V~N~~~~~~-~v~V~l~~~~~~~~~~~~~~--------------------------~------ 820 (1451)
T 4acq_A 774 TMPYSVIRGEAFTLKATVLNYLPKCI-RVSVQLEASPAFLAVPVEKE--------------------------Q------ 820 (1451)
T ss_dssp ECCSEEESSSCEEEEEEEEECSSSCE-EEEEEECCCTTEEEEESCSC--------------------------C------
T ss_pred cCCceEecCCEEEEEEEEEeccCccE-EEEEEEEcCCCeEeecCCCC--------------------------c------
Confidence 58999999999999999999987543 35555544332333211000 0
Q ss_pred CCCcccCCCCeEEEEEEEEecCCceeEEEEEEEE
Q 002942 455 PEGISIQGETPLLWPLWYRAAVPGKISLSITIYY 488 (863)
Q Consensus 455 P~~~~L~pGes~~lPlwlra~~~G~~~l~lLfyY 488 (863)
....|.+|++..+++.+++...|.+.+.+-..-
T Consensus 821 -~~v~l~~~~~~~v~f~v~p~~~G~~~i~v~a~~ 853 (1451)
T 4acq_A 821 -APHCICANGRQTVSWAVTPKSLGNVNFTVSAEA 853 (1451)
T ss_dssp -CCEEECTTEEEEEEEEEEECSCEEEEEEEEEEE
T ss_pred -eEEEECCCCeEEEEEEEEECccceEEEEEEEEE
Confidence 123488999999999999889999999887643
No 235
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=26.72 E-value=2.7e+02 Score=28.30 Aligned_cols=116 Identities=9% Similarity=0.024 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhHhCcch------hhHHHHH-------HHHHhhhhcc--CCCcchhhHhHHHhhccc
Q 002942 15 CGLWWVEMLKARHQYKDAATVYFRICGEEP------LHSAVML-------EQASYCYLLS--KPPMLHKYGFHLVLSGDR 79 (863)
Q Consensus 15 ~all~~E~lk~~~~~~eAa~~Lir~tsed~------L~SALLL-------EQAA~c~L~~--~ppm~RKyAfhmVLAGhR 79 (863)
+-+.++.++...|.+.+|-..|-|+...+. +..|.+. +.|--+|-++ ..|. ...+++- -|.-
T Consensus 136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~-~~~~ 212 (308)
T 2ond_A 136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD--IPEYVLA-YIDY 212 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT--CHHHHHH-HHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHH-HHHH
Confidence 445567778888999999998888775332 1112221 1233333221 1121 1233333 3455
Q ss_pred hhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 80 YKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 80 yskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
+.+.|+...|+.+|.+|+....-.. --..-+...+++.....|+.+.|...+.+
T Consensus 213 ~~~~g~~~~A~~~~~~al~~~~l~p--~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 213 LSHLNEDNNTRVLFERVLTSGSLPP--EKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHTTCCHHHHHHHHHHHHHSSSSCG--GGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhccCCCH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6788999999999999998521000 00123667778888889999999866544
No 236
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=26.10 E-value=2.3e+02 Score=34.64 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=48.2
Q ss_pred ceeecCceEEEEEEEeCccc-ccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeee
Q 002942 213 NICVAGEPVKVDIEFKNPLQ-IPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEV 291 (863)
Q Consensus 213 ~~~vvgEpi~V~V~L~NPL~-ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 291 (863)
+.++.||.+.+.+.+.|=++ -++.+ .+++...++ ...... +. .-...
T Consensus 89 ~~v~~GD~~~i~~~v~N~~~~~~~~v-----~v~l~~~~~-~~~~~~--------------~~------------~~~~~ 136 (915)
T 2hr0_B 89 YSVVRNEQVEIRAVLYNYRQNQELKV-----RVELLHNPA-FCSLAT--------------TK------------RRHQQ 136 (915)
T ss_dssp SEEETTCCEEEEEEEEECCSSCCEEE-----EEEECCCTT-EECSCC--------------SS------------SCEEE
T ss_pred CEEecCcEEEEEEEEEcCCCCeeEEE-----EEEEecCCc-eEeecC--------------CC------------Cccee
Confidence 35678999999999999888 65542 233332211 100000 00 00125
Q ss_pred eEEECCCceEEEEEEEEeCceeEEEEE
Q 002942 292 DISLGGAETILVQLMVTPKVEGILKIV 318 (863)
Q Consensus 292 ~i~L~p~etk~V~L~v~P~~~G~L~I~ 318 (863)
.+.|.++++++|.+.++|...|.+.|.
T Consensus 137 ~v~l~~~~~~~v~f~i~~~~~G~~~i~ 163 (915)
T 2hr0_B 137 TVTIPPKSSLSVPYVIVPLKTGLQEVE 163 (915)
T ss_dssp EEEECTTEEEEEEEEEEECSCEEEEEE
T ss_pred EEEECCCCeEEEEEEEEECccceEEEE
Confidence 799999999999999999999976643
No 237
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=25.40 E-value=1.9e+02 Score=24.55 Aligned_cols=44 Identities=7% Similarity=-0.125 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 86 INHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 86 r~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
...|...+++|+++=-. +---.+-+|..++..|+++.|+.++.+
T Consensus 25 ~~~A~~~l~~AL~~dp~------~~rA~~~lg~~~~~~g~y~~Ai~~w~~ 68 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY------NEAALSLIANDHFISFRFQEAIDTWVL 68 (93)
T ss_dssp CHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcC------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 67889999999985222 112457789999999999999988755
No 238
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=24.55 E-value=2.1e+02 Score=37.56 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=48.9
Q ss_pred ceeecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeee
Q 002942 213 NICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 292 (863)
Q Consensus 213 ~~~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~ 292 (863)
..++.||.+.+.+.+.|=++-++.+ .+++..+++.... .. +. ......
T Consensus 822 ysv~rGEq~~l~v~VfNy~~~~~~V-----~V~L~~s~~~~~~-~~--------------~~------------~~~~q~ 869 (1642)
T 3prx_B 822 YSVVKNEQVEIRAILHNYVNEDIYV-----RVELLYNPAFCSA-ST--------------KG------------QRYRQQ 869 (1642)
T ss_dssp SCEETTCCEEEEEEEEECSSSCEEE-----EEEECCCTTEEES-CC--------------SS------------SCCEEE
T ss_pred CEEecCCEEEEEEEEEcCCCCcEEE-----EEEEEcCCCeEee-cc--------------CC------------CcceeE
Confidence 3567899999999999999876544 3333322111000 00 00 001247
Q ss_pred EEECCCceEEEEEEEEeCceeEEEEE
Q 002942 293 ISLGGAETILVQLMVTPKVEGILKIV 318 (863)
Q Consensus 293 i~L~p~etk~V~L~v~P~~~G~L~I~ 318 (863)
+.+.+++.++|.+.++|...|...|.
T Consensus 870 v~v~a~~~~~v~f~i~p~~~G~~~i~ 895 (1642)
T 3prx_B 870 FPIKALSSRAVPFVIVPLEQGLHDVE 895 (1642)
T ss_dssp EEECSSEEEEEEEEEEECSCEEEEEE
T ss_pred EEECCCCeEEEEEEEEEeecccEEEE
Confidence 89999999999999999999986653
No 239
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=24.47 E-value=1e+02 Score=33.59 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=12.1
Q ss_pred hccchhcCCCcHHHHHHHHHHHhh
Q 002942 76 SGDRYKKCDQINHAIRTYRSAVSV 99 (863)
Q Consensus 76 AGhRyskagqr~hAlRCY~~A~~v 99 (863)
.|.-|.+.|+...|+.+|.+|+.+
T Consensus 103 lg~~~~~~g~~~~Al~~~~~al~l 126 (382)
T 2h6f_A 103 FRAVLQRDERSERAFKLTRDAIEL 126 (382)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHh
Confidence 334444455555555555555543
No 240
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=23.43 E-value=63 Score=23.01 Aligned_cols=24 Identities=13% Similarity=0.263 Sum_probs=19.0
Q ss_pred HHHHHHHHhccchHHHHHHHHhHh
Q 002942 17 LWWVEMLKARHQYKDAATVYFRIC 40 (863)
Q Consensus 17 ll~~E~lk~~~~~~eAa~~Lir~t 40 (863)
.-|+|.+++.|.++||.+.--+|.
T Consensus 6 aQW~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 6 AQWAEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH
Confidence 458999999999999987554443
No 241
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=23.20 E-value=3.8e+02 Score=29.19 Aligned_cols=46 Identities=13% Similarity=0.252 Sum_probs=28.7
Q ss_pred hcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhC-----CHHHHHHHHHH
Q 002942 81 KKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLG-----MHDIAVAHMLE 135 (863)
Q Consensus 81 skagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg-----~~~~Av~h~l~ 135 (863)
...|....|+++|++|... + ...-.+.||..+. .| +++.|+++|.+
T Consensus 262 ~~~~d~~~A~~~~~~Aa~~----g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 262 PELGDVEQMMKYLDNGRAA----D----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp GGGCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 3467788888888888742 1 1224566666665 44 67777666644
No 242
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ...
Probab=21.98 E-value=1.1e+02 Score=27.46 Aligned_cols=67 Identities=13% Similarity=0.141 Sum_probs=37.9
Q ss_pred cccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCC--
Q 002942 379 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPE-- 456 (863)
Q Consensus 379 ~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~-- 456 (863)
++..|- ..++|+++|.|..|+. +-||-.|+-. +..++|-...+ -+.=+++|.
T Consensus 14 ~lN~gr-~~~~l~V~NtGDRPIQ----VGSHyHF~E~----N~aL~FDR~~A-----------------~G~RLdIpAGT 67 (101)
T 4ep8_B 14 ALNTGR-ATCRVVVENHGDRPIQ----VGSHYHFAEV----NPALKFDRQQA-----------------AGYRLNIPAGT 67 (101)
T ss_dssp ECSTTC-CEEEEEEEECSSSCEE----EETTSCGGGS----CTTEESCTTTT-----------------TTEEECSSTTC
T ss_pred EEcCCC-CEEEEEEEeCCCcceE----EccccChhHc----CcceeecHhhc-----------------cCceecccCCC
Confidence 344443 4788999999998864 3467666511 11111111111 111234552
Q ss_pred CcccCCCCeEEEEEE
Q 002942 457 GISIQGETPLLWPLW 471 (863)
Q Consensus 457 ~~~L~pGes~~lPlw 471 (863)
....+||+++++.|.
T Consensus 68 avRFEPG~~r~V~LV 82 (101)
T 4ep8_B 68 AVRFEPGQKREVELV 82 (101)
T ss_dssp EEEECTTCEEEEEEE
T ss_pred eEeeCCCCeEEEEEE
Confidence 357899999999875
No 243
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.78 E-value=4.9e+02 Score=24.23 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=24.2
Q ss_pred ceeeccCCCCceeEeEEEEEEeCCCccEEEEEEecC
Q 002942 695 RTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFD 730 (863)
Q Consensus 695 ~~i~h~F~~~~c~vpv~l~l~N~s~~~v~v~i~~~~ 730 (863)
..+..++.-. -.+...|+|.|.++.+|.++|.|..
T Consensus 21 ~~L~F~~p~~-~~~~~~l~L~N~s~~~VaFKVKTT~ 55 (147)
T 2cri_A 21 SDLKFKGPFT-DVVTTNLKLQNPSDRKVCFKVKTTA 55 (147)
T ss_dssp SEEEEECCSS-SCCCEEEEEECCSSSCEEEEEEESC
T ss_pred CeEEEeCCCC-ceEEEEEEEECCCCCcEEEEEECCC
Confidence 3555533221 1344578999999999999999865
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=21.73 E-value=2.8e+02 Score=29.57 Aligned_cols=25 Identities=16% Similarity=-0.057 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 111 HVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 111 HI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
-||..+|..+...|++.+|.+||+.
T Consensus 135 ~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 135 YLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 3899999999999999999999974
No 245
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.05 E-value=1.4e+02 Score=32.95 Aligned_cols=98 Identities=10% Similarity=0.076 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHhHhCc---chhhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcCCCcHHHH
Q 002942 14 RCGLWWVEMLKARHQYKDAATVYFRICGE---EPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAI 90 (863)
Q Consensus 14 R~all~~E~lk~~~~~~eAa~~Lir~tse---d~L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyskagqr~hAl 90 (863)
|+.+-.++++-..|.|.+|...|-++-.. ..-..-+.+++...|+... ...++.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~-----------------------d~~~~~ 188 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYN-----------------------DQLYVK 188 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHT-----------------------CHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc-----------------------cHHHHH
Confidence 35556788888999999999999876521 1134567777777776543 466777
Q ss_pred HHHHHHHhhhcC-CCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 91 RTYRSAVSVYKG-STWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 91 RCY~~A~~vY~~-~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
..+.+|..+... ..|.. ..++...-|..+...+++..|-++|+.
T Consensus 189 ~~~~ka~~~~~~~~d~~~-~~~lk~~~gl~~l~~r~f~~Aa~~f~e 233 (429)
T 4b4t_R 189 EKLEAVNSMIEKGGDWER-RNRYKTYYGIHCLAVRNFKEAAKLLVD 233 (429)
T ss_dssp HHHHHHHHHHTTCCCTHH-HHHHHHHHHHGGGGTSCHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHH-HHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 888888777654 45533 446777778888888999999888877
No 246
>4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B*
Probab=20.84 E-value=1.3e+02 Score=27.89 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=40.3
Q ss_pred CccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCC
Q 002942 377 PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPE 456 (863)
Q Consensus 377 P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~ 456 (863)
+..+..|. .+++|+++|.|..|+. +-||-.|+- .+..++|-...++ +.=+++|.
T Consensus 18 ~I~lN~gr-~~~~l~V~NtGDRPIQ----VGSHyHF~E----~N~aL~FDR~~A~-----------------G~RLdIpA 71 (126)
T 4ac7_B 18 EIEINAGR-EKTTIRVSNTGDRPIQ----VGSHIHFVE----VNKELLFDRAEGI-----------------GRRLNIPS 71 (126)
T ss_dssp EEETTTTS-CEEEEEEEECSSSCEE----EETTSCGGG----SCTTEESCGGGGT-----------------TEEECSCT
T ss_pred CEEeCCCC-cEEEEEEEeCCCCCEE----Eccccchhh----cCchhhccHhhhc-----------------CccccccC
Confidence 34455553 5689999999998874 456776651 1111222111111 11233452
Q ss_pred --CcccCCCCeEEEEEEE
Q 002942 457 --GISIQGETPLLWPLWY 472 (863)
Q Consensus 457 --~~~L~pGes~~lPlwl 472 (863)
....+||+++++.|.=
T Consensus 72 GTavRFEPG~~k~V~LV~ 89 (126)
T 4ac7_B 72 GTAARFEPGEEMEVELTE 89 (126)
T ss_dssp TCEEEECTTCEEEEEEEE
T ss_pred CCeEeeCCCCeEEEEEEE
Confidence 3578999999998853
No 247
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B*
Probab=20.84 E-value=1.3e+02 Score=27.89 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=40.3
Q ss_pred CccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCC
Q 002942 377 PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPE 456 (863)
Q Consensus 377 P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~P~ 456 (863)
+..+..|. .+++|+++|.|..|+. +-||-.|+- .+..++|-...++ +.=+++|.
T Consensus 18 ~I~lN~gr-~~~~l~V~NtGDRPIQ----VGSHyHF~E----~N~aL~FDR~~A~-----------------G~RLdIpA 71 (126)
T 4ubp_B 18 EIEINAGR-EKTTIRVSNTGDRPIQ----VGSHIHFVE----VNKELLFDRAEGI-----------------GRRLNIPS 71 (126)
T ss_dssp EEETTTTS-CEEEEEEEECSSSCEE----EETTSCGGG----SCTTEESCGGGGT-----------------TEEECSCT
T ss_pred CEEeCCCC-cEEEEEEEeCCCCCEE----Eccccchhh----cCchhhccHhhhc-----------------CccccccC
Confidence 34455553 5689999999998874 456776651 1111222111111 11233452
Q ss_pred --CcccCCCCeEEEEEEE
Q 002942 457 --GISIQGETPLLWPLWY 472 (863)
Q Consensus 457 --~~~L~pGes~~lPlwl 472 (863)
....+||+++++.|.=
T Consensus 72 GTavRFEPG~~k~V~LV~ 89 (126)
T 4ubp_B 72 GTAARFEPGEEMEVELTE 89 (126)
T ss_dssp TCEEEECTTCEEEEEEEE
T ss_pred CCeEeeCCCCeEEEEEEE
Confidence 3578999999998853
No 248
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=20.50 E-value=2.2e+02 Score=36.96 Aligned_cols=72 Identities=17% Similarity=0.148 Sum_probs=48.1
Q ss_pred ceeecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeee
Q 002942 213 NICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 292 (863)
Q Consensus 213 ~~~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~ 292 (863)
..++.||.+.+.+.+.|=++-++.+ .+++..+++ .... .. .. ....
T Consensus 777 ~sv~rGE~~~l~~~V~N~~~~~~~v-----~V~l~~~~~-~~~~------------~~--~~--------------~~~~ 822 (1451)
T 4acq_A 777 YSVIRGEAFTLKATVLNYLPKCIRV-----SVQLEASPA-FLAV------------PV--EK--------------EQAP 822 (1451)
T ss_dssp SEEESSSCEEEEEEEEECSSSCEEE-----EEEECCCTT-EEEE------------ES--CS--------------CCCC
T ss_pred ceEecCCEEEEEEEEEeccCccEEE-----EEEEEcCCC-eEee------------cC--CC--------------CceE
Confidence 3567899999999999998866544 223332211 1000 00 00 0147
Q ss_pred EEECCCceEEEEEEEEeCceeEEEEE
Q 002942 293 ISLGGAETILVQLMVTPKVEGILKIV 318 (863)
Q Consensus 293 i~L~p~etk~V~L~v~P~~~G~L~I~ 318 (863)
+.|.+++++++.+.++|...|...|.
T Consensus 823 v~l~~~~~~~v~f~v~p~~~G~~~i~ 848 (1451)
T 4acq_A 823 HCICANGRQTVSWAVTPKSLGNVNFT 848 (1451)
T ss_dssp EEECTTEEEEEEEEEEECSCEEEEEE
T ss_pred EEECCCCeEEEEEEEEECccceEEEE
Confidence 89999999999999999999986654
No 249
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=20.41 E-value=1.1e+02 Score=33.37 Aligned_cols=76 Identities=13% Similarity=0.027 Sum_probs=0.0
Q ss_pred cCCCeEEEEEecCCcc-ccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCC
Q 002942 364 KSLPKLEGLIHPLPER-AYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGG 442 (863)
Q Consensus 364 ~~~P~L~v~~~~~P~~-ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~ 442 (863)
..+|-+++.-..+.-. +..||...-.|+|+|+|.+|+.. +|..-.++...
T Consensus 25 ~~~P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f--------~f~~~~~~~~~--------------------- 75 (366)
T 3qis_A 25 DFLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHF--------SFIPKLNDSQY--------------------- 75 (366)
T ss_dssp ---CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEE--------EEECCTTCSSS---------------------
T ss_pred ccCCeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEE--------EEEeCCCCCCC---------------------
Q ss_pred CCCCCCcceeecCCCcccCCCCeEEEEEEE
Q 002942 443 NFNKMPQAVFSFPEGISIQGETPLLWPLWY 472 (863)
Q Consensus 443 ~~~~~~~~v~~~P~~~~L~pGes~~lPlwl 472 (863)
.+..+---|..+.|.||++.++.|.+
T Consensus 76 ----~~~wl~v~p~~g~l~Pge~~~i~l~~ 101 (366)
T 3qis_A 76 ----CKPWLRAEPFEGYLEPNETVDISLDV 101 (366)
T ss_dssp ----SCTTEEEESCEEEECTTCEEEEEEEE
T ss_pred ----CCCcEEEeCCccEECCCCEEEEEEEE
No 250
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=20.35 E-value=68 Score=36.25 Aligned_cols=50 Identities=22% Similarity=0.205 Sum_probs=31.3
Q ss_pred HHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942 72 HLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 135 (863)
Q Consensus 72 hmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~ 135 (863)
...--|++|...|.-.-|..+|.++ ..| ..||.-++.+|+++.|+..+.+
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a------~n~--------~~LA~~L~~Lg~yq~AVea~~K 173 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV------SNF--------GRLASTLVHLGEYQAAVDGARK 173 (449)
T ss_dssp -------------CTTTHHHHHHHT------TCH--------HHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh------hhH--------HHHHHHHHHhccHHHHHHHHHH
Confidence 5667799999999999999999988 333 6788889999999999987766
No 251
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=20.34 E-value=80 Score=30.10 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=24.1
Q ss_pred ceEEEEEEEeCcccccEEeeeEEEEEE
Q 002942 219 EPVKVDIEFKNPLQIPISISNISLICE 245 (863)
Q Consensus 219 Epi~V~V~L~NPL~ipL~ls~I~L~~~ 245 (863)
-.+.+.+.++||-.++|.+..|....+
T Consensus 39 ~~~~~~l~V~NPN~~~lpi~gi~y~l~ 65 (151)
T 1xo8_A 39 VEYLAKVSVTNPYSHSIPICEISFTFH 65 (151)
T ss_dssp ECEEEEEEEECSSSSCCCCEEEEEEEE
T ss_pred eEEEEEEEEECCCCCCcccccEEEEEE
Confidence 368999999999999999999998764
Done!