BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002945
(863 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BDL|A Chain A, Crystal Structure Of A Truncated Human Tudor-Sn
Length = 570
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 133/221 (60%), Gaps = 14/221 (6%)
Query: 537 AGVNVAELVVSRGLGNVINHR-DFEERSNYYDXXXXXXXXXXXXXXXCYSSKEPPVMHIQ 595
G+N+AE +VS+GL VI +R D ++RS++YD +S KE P+ +
Sbjct: 128 GGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVA 187
Query: 596 DLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCP--G 653
D++ +KA+ FLPFLQR+ R AVVEYV SG R K+ +PKETC I F +G+ CP
Sbjct: 188 DIS-GDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGA 246
Query: 654 RN--------ERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLE 705
RN E +S EA L ++ +LQR+VE+EVE++D+ G F+G L N++V+L+E
Sbjct: 247 RNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHIDGANLSVLLVE 306
Query: 706 AGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVE 746
L+K+ F ++R L AE++AK +K K+W +Y E
Sbjct: 307 HALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEE 345
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 157/376 (41%), Gaps = 79/376 (21%)
Query: 12 YRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDE---------- 61
+ A+V V + D++V+ S KT+ LSSI PRL D+
Sbjct: 25 FVAKVMQVLNADAIVVKLNSGDY------KTIHLSSIRPPRLEGENTQDKNKKLRPLYDI 78
Query: 62 PFAWDSREFLRKLCIGKEVTFRVDY---------AVPNIG-REFGTVILGDKNVAMLVVS 111
P+ +++REFLRK IGK+V VDY VP R TV +G N+A +VS
Sbjct: 79 PYMFEAREFLRKKLIGKKVNVTVDYIRPASPATETVPAFSERTCATVTIGGINIAEALVS 138
Query: 112 EGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSK--VPGAAEASIRNLPPSAIG 169
+G A V + S ELL E +A G G SK VP A I G
Sbjct: 139 KGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADIS-------G 191
Query: 170 DSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGXXXXXXXXXXX 229
D+ GR + +VE GS L++YL E + +AG
Sbjct: 192 DTQKAKQFLPFLQRAGRS-EAVVEYVFSGSRLKLYLPKETCLITFLLAG----------- 239
Query: 230 XXXDTDTEETNGDVSAAEAVAPLNSAQRLXXXXXXXXXXXXDEPFALDAKYFTEMRVLNR 289
+ A+ L EPF+ +A FT+ VL R
Sbjct: 240 -------------------IECPRGARNL------PGLVQEGEPFSEEATLFTKELVLQR 274
Query: 290 EVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKA 349
EV + +E +DK N IG + + DG +L++ LVE+ L+K + ++A + L +
Sbjct: 275 EVEVEVESMDKAGNFIGWL-HIDG---ANLSVLLVEHALSK-VHFTAE--RSSYYKSLLS 327
Query: 350 ADLQAKKTRLRMWTNY 365
A+ AK+ + ++W +Y
Sbjct: 328 AEEAAKQKKEKVWAHY 343
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 14/90 (15%)
Query: 377 DQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAA---- 432
D+ F KV++V++ D I+V +S Y + ++LSSIR P++ +K
Sbjct: 22 DKQFVAKVMQVLNADAIVVKLNSGDY------KTIHLSSIRPPRLEGENTQDKNKKLRPL 75
Query: 433 ----YAREAREFLRTRLIGRQVNVQMEYSR 458
Y EAREFLR +LIG++VNV ++Y R
Sbjct: 76 YDIPYMFEAREFLRKKLIGKKVNVTVDYIR 105
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 751 KFEVFYIDYGNQELVPYNKLRPIDPSLSS--TPPLAQLCSLAYIKIPALED 799
K VFYIDYGN+E++P +L + P+ S+ P A + A+I++P +D
Sbjct: 440 KIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDD 490
>pdb|2WAC|A Chain A, Extended Tudor Domain Of Drosophila Melanogaster Tudor-Sn
( P100)
pdb|2WAC|B Chain B, Extended Tudor Domain Of Drosophila Melanogaster Tudor-Sn
( P100)
Length = 218
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 14/143 (9%)
Query: 679 VETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSD------RIPDSHLLEQAEKS 732
V + T TF ES + LE+ ++KL F S+ P L A+ +
Sbjct: 9 VTEITETLTFFAQSVESGSK-----LESLMSKLHADFQSNPPIAGSYTPKRGDLVAAQFT 63
Query: 733 AKSQKLKIWENYVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYI 792
+Q + V+ N V YIDYGN+E +P N+L + P+ SS P A +LA +
Sbjct: 64 LDNQWYRAKVERVQGSNAT--VLYIDYGNKETLPTNRLAALPPAFSSEKPYATEYALALV 121
Query: 793 KIPALEDEYGPEAAEFLNEHTYN 815
+P ++E EA +E N
Sbjct: 122 ALPT-DNEDKEEALRAFSEDVLN 143
>pdb|3OMG|A Chain A, Structure Of Human Snd1 Extended Tudor Domain In Complex
With The Symmetrically Dimethylated Arginine Piwil1
Peptide R14me2s
pdb|3OMG|B Chain B, Structure Of Human Snd1 Extended Tudor Domain In Complex
With The Symmetrically Dimethylated Arginine Piwil1
Peptide R14me2s
pdb|3OMC|A Chain A, Structure Of Human Snd1 Extended Tudor Domain In Complex
With The Symmetrically Dimethylated Arginine Piwil1
Peptide R4me2s
pdb|3OMC|B Chain B, Structure Of Human Snd1 Extended Tudor Domain In Complex
With The Symmetrically Dimethylated Arginine Piwil1
Peptide R4me2s
Length = 261
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 751 KFEVFYIDYGNQELVPYNKLRPIDPSLSS--TPPLAQLCSLAYIKIPALED 799
K VFYIDYGN+E++P +L + P+ S+ P A + A+I++P +D
Sbjct: 109 KIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDD 159
>pdb|2HQX|A Chain A, Crystal Structure Of Human P100 Tudor Domain Conserved
Region
pdb|2HQX|B Chain B, Crystal Structure Of Human P100 Tudor Domain Conserved
Region
pdb|2HQE|A Chain A, Crystal Structure Of Human P100 Tudor Domain: Large
Fragment
pdb|2HQE|B Chain B, Crystal Structure Of Human P100 Tudor Domain: Large
Fragment
Length = 246
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 751 KFEVFYIDYGNQELVPYNKLRPIDPSLSS--TPPLAQLCSLAYIKIPALED 799
K VFYIDYGN+E++P +L + P+ S+ P A + A+I++P +D
Sbjct: 94 KIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDD 144
>pdb|2O4X|A Chain A, Crystal Structure Of Human P100 Tudor Domain
Length = 217
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 751 KFEVFYIDYGNQELVPYNKLRPIDPSLSS--TPPLAQLCSLAYIKIPALED 799
K VFYIDYGN+E++P +L + P+ S+ P A + A+I++P +D
Sbjct: 80 KIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDD 130
>pdb|3HEJ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+p Cryogenic Temperature
pdb|3HEJ|D Chain D, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+p Cryogenic Temperature
pdb|3HEJ|B Chain B, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+p Cryogenic Temperature
pdb|3HEJ|C Chain C, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+p Cryogenic Temperature
Length = 143
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA R+K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAF-RKKMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|4IAL|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs H121e At Cryogenic Temperature
Length = 143
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 613 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 672
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 673 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 727
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNT-EEQLLR 120
Query: 728 QAEKSAKSQKLKIW 741
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 14/99 (14%)
Query: 271 DEPFALDAKYFTEMRVLN-REVRIVLEG---VDKFKNLIGSVFYPDGETAKDLAMELVEN 326
+E + +A FT+ V N +++ + + DK+ + + Y DG+ + LV
Sbjct: 45 NEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYI-YADGKMVNEA---LVRQ 100
Query: 327 GLAK--YIEWSANMMEEDAKRRLKAADLQAKKTRLRMWT 363
GLAK Y+ + N EE + L+ A+ QAKK +L +W+
Sbjct: 101 GLAKVAYV-YKGNNTEE---QLLRKAEAQAKKEKLNIWS 135
>pdb|4J1M|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs R105e At Cryogenic Temperature
Length = 143
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+E GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVEQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Query: 271 DEPFALDAKYFTEMRVLN-REVRIVLEG---VDKFKNLIGSVFYPDGETAKDLAMELVEN 326
+E + +A FT+ V N +++ + + DK+ + + Y DG+ + LVE
Sbjct: 45 NEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYI-YADGKMVNE---ALVEQ 100
Query: 327 GLAK--YIEWSANMMEEDAKRRLKAADLQAKKTRLRMWT 363
GLAK Y+ N E+ L+ A+ QAKK +L +W+
Sbjct: 101 GLAKVAYVYKGNNTHEQ----LLRKAEAQAKKEKLNIWS 135
>pdb|4IUN|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs R126e At Cryogenic Temperature
Length = 143
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + LLE+AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLEKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|4IZ8|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs H8e At Cryogenic Temperature
Length = 143
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3MHB|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L38a At Cryogenic Temperature
Length = 143
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLAVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3D8G|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I72r At Cryogenic Temperature
Length = 143
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKI---LQRDV 675
PA + + G K++ + + F V P NE+Y EA ++ + +R+V
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKREV 68
Query: 676 EIEV-ETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAK 734
E + + D+ G L ++ V L+ GLAK+ + + + LL +AE AK
Sbjct: 69 EFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQAK 127
Query: 735 SQKLKIW 741
+KL IW
Sbjct: 128 KEKLNIW 134
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 271 DEPFALDAKYFTEMRVLNREVRIVL----EGVDKFKNLIGSVFYPDGETAKDLAMELVEN 326
+E + +A FT+ V N + R V + DK+ + + Y DG+ + LV
Sbjct: 45 NEKYGPEASAFTKKMVENAKKREVEFDKGQRTDKYGRGLAYI-YADGKMVNEA---LVRQ 100
Query: 327 GLAK--YIEWSANMMEEDAKRRLKAADLQAKKTRLRMWT 363
GLAK Y+ N E+ L+ A+ QAKK +L +W+
Sbjct: 101 GLAKVAYVYKGNNTHEQ----LLRKAEAQAKKEKLNIWS 135
>pdb|3LX0|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs D21n At Cryogenic Temperature
Length = 143
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G+ K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGNTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
Score = 29.3 bits (64), Expect = 9.3, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 14/99 (14%)
Query: 271 DEPFALDAKYFTEMRVLN-REVRIVLEG---VDKFKNLIGSVFYPDGETAKDLAMELVEN 326
+E + +A FT+ V N +++ + + DK+ + + Y DG+ + LV
Sbjct: 45 NEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYI-YADGKMVNE---ALVRQ 100
Query: 327 GLAK--YIEWSANMMEEDAKRRLKAADLQAKKTRLRMWT 363
GLAK Y+ N E+ L+ A+ QAKK +L +W+
Sbjct: 101 GLAKVAYVYKGNNTHEQ----LLRKAEAQAKKEKLNIWS 135
>pdb|3SK8|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs M98g Apo Protein At Cryogenic Temperature
pdb|3S9W|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs M98g Bound To Ca2+ And
Thymidine-5',3'-Diphosphate At Cryogenic Temperature
Length = 143
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKGVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3D4D|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs Y91e At Cryogenic Temperature
pdb|3D4D|B Chain B, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs Y91e At Cryogenic Temperature
Length = 143
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAEIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 14/99 (14%)
Query: 271 DEPFALDAKYFTEMRVLN-REVRIVLEG---VDKFKNLIGSVFYPDGETAKDLAMELVEN 326
+E + +A FT+ V N +++ + + DK+ + + Y DG+ + LV
Sbjct: 45 NEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAEI-YADGKMVNE---ALVRQ 100
Query: 327 GLAK--YIEWSANMMEEDAKRRLKAADLQAKKTRLRMWT 363
GLAK Y+ N E+ L+ A+ QAKK +L +W+
Sbjct: 101 GLAKVAYVYKGNNTHEQ----LLRKAEAQAKKEKLNIWS 135
>pdb|3TP5|A Chain A, Crystal Structure Of Staphylcoccal Nulease Variant
Delta+nviagla V23eL36E AT CRYOGENIC TEMPERATURE
Length = 143
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 649 VRCPGRNERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVIL 703
V P NE+Y EA + K+++ +IEVE D+ G L ++ V L
Sbjct: 39 VDIPEFNEKYGPEAAAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEAL 97
Query: 704 LEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ GLAK+ + + + LL +AE AK +KL IW
Sbjct: 98 VRQGLAKVAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 134
>pdb|3T13|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs A69g At Cryogenic Temperature
pdb|3T13|B Chain B, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs A69g At Cryogenic Temperature
pdb|3SR1|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs A69g Bound To Ca2+ And
Thymidine-5',3'-Diphosphate At Cryogenic Temperature
Length = 143
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENGKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
Score = 29.3 bits (64), Expect = 8.8, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 14/99 (14%)
Query: 271 DEPFALDAKYFTEMRVLN-REVRIVLEG---VDKFKNLIGSVFYPDGETAKDLAMELVEN 326
+E + +A FT+ V N +++ + + DK+ + + Y DG+ + LV
Sbjct: 45 NEKYGPEASAFTKKMVENGKKIEVEFDKGQRTDKYGRGLAYI-YADGKMVNE---ALVRQ 100
Query: 327 GLAK--YIEWSANMMEEDAKRRLKAADLQAKKTRLRMWT 363
GLAK Y+ N E+ L+ A+ QAKK +L +W+
Sbjct: 101 GLAKVAYVYKGNNTHEQ----LLRKAEAQAKKEKLNIWS 135
>pdb|4F7X|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92aL25A AT CRYOGENIC TEMPERATURE
Length = 143
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 613 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 672
++ + PA + + G K + + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKAMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 673 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 727
+IEVE D+ G L + V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYAYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 728 QAEKSAKSQKLKIW 741
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|4HTH|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+viagla At Cryogenic Temperature
Length = 143
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMVFRLLLVDIPEFNEKYGPEAAAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|4DF7|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V23lV99I AT CRYOGENIC TEMPERATURE
Length = 143
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTLKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ + L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMINEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3BDC|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs At Cryogenic Temperature
Length = 143
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
Score = 29.3 bits (64), Expect = 9.3, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 14/99 (14%)
Query: 271 DEPFALDAKYFTEMRVLN-REVRIVLEG---VDKFKNLIGSVFYPDGETAKDLAMELVEN 326
+E + +A FT+ V N +++ + + DK+ + + Y DG+ + LV
Sbjct: 45 NEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYI-YADGKMVNE---ALVRQ 100
Query: 327 GLAK--YIEWSANMMEEDAKRRLKAADLQAKKTRLRMWT 363
GLAK Y+ N E+ L+ A+ QAKK +L +W+
Sbjct: 101 GLAKVAYVYKGNNTHEQ----LLRKAEAQAKKEKLNIWS 135
>pdb|4F8M|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V23iI92V AT CRYOGENIC TEMPERATURE
Length = 143
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTIKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYVYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 14/99 (14%)
Query: 271 DEPFALDAKYFTEMRVLN-REVRIVLEG---VDKFKNLIGSVFYPDGETAKDLAMELVEN 326
+E + +A FT+ V N +++ + + DK+ + V Y DG+ + LV
Sbjct: 45 NEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYV-YADGKMVNE---ALVRQ 100
Query: 327 GLAK--YIEWSANMMEEDAKRRLKAADLQAKKTRLRMWT 363
GLAK Y+ N E+ L+ A+ QAKK +L +W+
Sbjct: 101 GLAKVAYVYKGNNTHEQ----LLRKAEAQAKKEKLNIWS 135
>pdb|3TME|A Chain A, Crystal Structure Of Staphylcoccal Nulease Variant
Delta+nviagla V23e At Cryogenic Temperature
Length = 143
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G+ K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGNTEKLMYKGQ--PMVFRLLLVDIPEFNEKYGPEAAAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3MXP|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs T62a At Cryogenic Temperature
pdb|3R3O|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs T62a At Cryogenic Temperature And With High
Redundancy
Length = 143
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFAK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3SK4|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs D21nV23E AT CRYOGENIC TEMPERATURE
Length = 143
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G+ K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGNTEKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|4DFA|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92aL36A AT CRYOGENIC TEMPERATURE
Length = 143
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 613 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 672
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRALLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 673 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 727
+IEVE D+ G L + V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYAYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 728 QAEKSAKSQKLKIW 741
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3OSO|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L25a At Cryogenic Temperature
Length = 143
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K + + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKAMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3PMF|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V23a At Cryogenic Temperature
Length = 143
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTAKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3NQT|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V66a At Cryogenic Temperature
Length = 143
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+ + +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMAENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3QOJ|A Chain A, Cryogenic Structure Of Staphylococcal Nuclease Variant
D+phsV23K
Length = 143
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTKKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3QOL|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
D+phsV23E AT PH 6 Determined At 100 K
Length = 143
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTEKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3DHQ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs A90r At Cryogenic Temperature
Length = 143
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLRYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3ERQ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant L25k
At Cryogenic Temperature
Length = 143
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 642 IAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESR 696
+ F V P NE+Y EA + K+++ +IEVE D+ G L ++
Sbjct: 32 MTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADG 90
Query: 697 TNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
V L+ GLAK+ + + + LL +AE AK +KL IW
Sbjct: 91 KMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 134
>pdb|3EVQ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L25e At Cryogenic Temperature
Length = 143
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 642 IAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESR 696
+ F V P NE+Y EA + K+++ +IEVE D+ G L ++
Sbjct: 32 MTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADG 90
Query: 697 TNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
V L+ GLAK+ + + + LL +AE AK +KL IW
Sbjct: 91 KMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 134
>pdb|3SK6|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+nviagla V23kL36E AT CRYOGENIC TEMPERATURE
Length = 143
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 649 VRCPGRNERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVIL 703
V P NE+Y EA + K+++ +IEVE D+ G L ++ V L
Sbjct: 39 VDIPEFNEKYGPEAAAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEAL 97
Query: 704 LEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ GLAK+ + + + LL +AE AK +KL IW
Sbjct: 98 VRQGLAKVAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 134
>pdb|3NP8|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L36a At Cryogenic Temperature
Length = 143
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRALLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3ERO|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I72e At Cryogenic Temperature
Length = 143
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 613 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 672
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 673 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 727
+ EVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKEEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 728 QAEKSAKSQKLKIW 741
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3OWF|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V66r At Cryogenic Temperature
Length = 143
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+ + +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMRENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3MEH|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92a At Cryogenic Temperature
Length = 143
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L + V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYAYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|4HMJ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L36d At Cryogenic Temperature
Length = 143
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 649 VRCPGRNERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVIL 703
V P NE+Y EA + K+++ +IEVE D+ G L ++ V L
Sbjct: 39 VDTPEFNEKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEAL 97
Query: 704 LEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ GLAK+ + + + LL +AE AK +KL IW
Sbjct: 98 VRQGLAKVAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 134
>pdb|3P75|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V104d At Cryogenic Temperature
Length = 129
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 5 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 61
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L GLAK+ + + + LL +AE A
Sbjct: 62 VEFDKGQRTDKYGRGLAYIYADGKMVNEALDRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 120
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 121 KKEKLNIW 128
>pdb|3EJI|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L36k At Cryogenic Temperature
Length = 143
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 649 VRCPGRNERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVIL 703
V P NE+Y EA + K+++ +IEVE D+ G L ++ V L
Sbjct: 39 VDTPEFNEKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEAL 97
Query: 704 LEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ GLAK+ + + + LL +AE AK +KL IW
Sbjct: 98 VRQGLAKVAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 134
>pdb|3TP8|A Chain A, Crystal Structure Of Staphylcoccal Nulease Variant
Delta+phs L36e At Cryogenic Temperature
Length = 143
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 649 VRCPGRNERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVIL 703
V P NE+Y EA + K+++ +IEVE D+ G L ++ V L
Sbjct: 39 VDTPEFNEKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEAL 97
Query: 704 LEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ GLAK+ + + + LL +AE AK +KL IW
Sbjct: 98 VRQGLAKVAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 134
>pdb|3MVV|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs F34a At Cryogenic Temperature
Length = 143
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 649 VRCPGRNERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVIL 703
V P NE+Y EA + K+++ +IEVE D+ G L ++ V L
Sbjct: 39 VDTPEFNEKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEAL 97
Query: 704 LEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ GLAK+ + + + LL +AE AK +KL IW
Sbjct: 98 VRQGLAKVAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 134
>pdb|3HZX|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
D+phsV 9 Determined At 100 K
Length = 143
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+ + +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMKENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3C1F|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V104k At Cryogenic Temperature
Length = 143
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALKRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3ITP|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs F34k At Cryogenic Temperature
Length = 143
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 649 VRCPGRNERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVIL 703
V P NE+Y EA + K+++ +IEVE D+ G L ++ V L
Sbjct: 39 VDTPEFNEKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEAL 97
Query: 704 LEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ GLAK+ + + + LL +AE AK +KL IW
Sbjct: 98 VRQGLAKVAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 134
>pdb|3QON|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
D+phsV23KL36E At Ph 7 Determined At 100 K
Length = 143
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 649 VRCPGRNERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVIL 703
V P NE+Y EA + K+++ +IEVE D+ G L ++ V L
Sbjct: 39 VDTPEFNEKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEAL 97
Query: 704 LEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ GLAK+ + + + LL +AE AK +KL IW
Sbjct: 98 VRQGLAKVAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 134
>pdb|3NHH|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
V23e-L36k At Cryogenic Temperature
Length = 143
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 649 VRCPGRNERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVIL 703
V P NE+Y EA + K+++ +IEVE D+ G L ++ V L
Sbjct: 39 VDTPEFNEKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEAL 97
Query: 704 LEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ GLAK+ + + + LL +AE AK +KL IW
Sbjct: 98 VRQGLAKVAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 134
>pdb|3H6M|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V104e At Cryogenic Temperature
Length = 143
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALERQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|4DGZ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92aL125A AT CRYOGENIC TEMPERATURE
Length = 143
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 613 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 672
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 673 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 727
+IEVE D+ G L + V L+ GLAK+ + + + L
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYAYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLAR 120
Query: 728 QAEKSAKSQKLKIW 741
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3SXH|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92al103a At Cryogenic Temperature
Length = 143
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 613 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 672
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 673 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 727
+IEVE D+ G L + V + GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYAYADGKMVNEAAVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 728 QAEKSAKSQKLKIW 741
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|1TT2|A Chain A, Cryogenic Crystal Structure Of Staphylococcal Nuclease
Variant Truncated Delta+phs I92k
Length = 138
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L + V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYKYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3NK9|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V74a At Cryogenic Temperature
Length = 143
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
E D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 AEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|1TQO|A Chain A, Cryogenic Crystal Structure Of Staphylococcal Nuclease
Variant Truncated Delta+phs I92e
pdb|1TR5|A Chain A, Room Temperature Structure Of Staphylococcal Nuclease
Variant Truncated Delta+phs I92e
Length = 138
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L + V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYEYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3VA5|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92aV23A AT CRYOGENIC TEMPERATURE
Length = 143
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTAKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L + V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYAYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3SK5|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V39d At Cryogenic Temperature
Length = 143
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 652 PGRNERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEA 706
P NE+Y EA + K+++ +IEVE D+ G L ++ V L+
Sbjct: 42 PEFNEKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQ 100
Query: 707 GLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
GLAK+ + + + LL +AE AK +KL IW
Sbjct: 101 GLAKVAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 134
>pdb|1KAB|A Chain A, Stress And Strain In Staphylococcal Nuclease
Length = 136
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 47 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 105
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ +G + + H L ++E AK +KL IW
Sbjct: 106 VAYVYGPNNTHEQH-LRKSEAQAKKEKLNIW 135
>pdb|3QB3|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92kl25a At Cryogenic Temperature
Length = 143
Score = 37.7 bits (86), Expect = 0.025, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K + + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKAMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L + V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYKYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|2E6N|A Chain A, Solution Structure Of The Tudor Domain Of Staphylococcal
Nuclease Domain-Containing Protein 1
Length = 104
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 751 KFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAY 791
K VFYIDYGN+E++P +L + P+ S+ AQ A+
Sbjct: 62 KIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAF 102
>pdb|3P1H|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V23kI92A AT CRYOGENIC TEMPERATURE
Length = 143
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTKKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L + V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYAYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3D4W|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs A109r At Cryogenic Temperature
Length = 143
Score = 37.7 bits (86), Expect = 0.028, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GL K+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLRKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3V2T|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92aV66A AT CRYOGENIC TEMPERATURE
Length = 143
Score = 37.7 bits (86), Expect = 0.028, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+ + +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMAENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L + V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYAYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|1STY|A Chain A, The Alpha Aneurism: A Structural Motif Revealed In An
Insertion Mutant Of Staphylococcal Nuclease
Length = 150
Score = 37.7 bits (86), Expect = 0.028, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHLRGKSEAQAKKEKLNIW 141
>pdb|3NXW|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L125a At Cryogenic Temperature
Length = 143
Score = 37.7 bits (86), Expect = 0.028, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + L +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLARKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Query: 271 DEPFALDAKYFTEMRVLN-REVRIVLEG---VDKFKNLIGSVFYPDGETAKDLAMELVEN 326
+E + +A FT+ V N +++ + + DK+ + + Y DG+ + LV
Sbjct: 45 NEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYI-YADGKMVNE---ALVRQ 100
Query: 327 GLAK--YIEWSANMMEEDAKRRLKAADLQAKKTRLRMWT 363
GLAK Y+ N E+ A++ A+ QAKK +L +W+
Sbjct: 101 GLAKVAYVYKGNNTHEQLARK----AEAQAKKEKLNIWS 135
>pdb|3MZ5|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L103a At Cryogenic Temperature
Length = 143
Score = 37.7 bits (86), Expect = 0.028, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V + GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEAAVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|2RBM|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I72k At Cryogenic Temperature
Length = 143
Score = 37.7 bits (86), Expect = 0.031, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKI---LQRDV 675
PA + + G K++ + + F V P NE+Y EA ++ + +++V
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKKEV 68
Query: 676 EIEV-ETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAK 734
E + + D+ G L ++ V L+ GLAK+ + + + LL +AE AK
Sbjct: 69 EFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQAK 127
Query: 735 SQKLKIW 741
+KL IW
Sbjct: 128 KEKLNIW 134
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 271 DEPFALDAKYFTEMRVLNREVRIVL----EGVDKFKNLIGSVFYPDGETAKDLAMELVEN 326
+E + +A FT+ V N + + V + DK+ + + Y DG+ + LV
Sbjct: 45 NEKYGPEASAFTKKMVENAKKKEVEFDKGQRTDKYGRGLAYI-YADGKMVNE---ALVRQ 100
Query: 327 GLAK--YIEWSANMMEEDAKRRLKAADLQAKKTRLRMWT 363
GLAK Y+ N E+ L+ A+ QAKK +L +W+
Sbjct: 101 GLAKVAYVYKGNNTHEQ----LLRKAEAQAKKEKLNIWS 135
>pdb|4HMI|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V99k At Cryogenic Temperature
Length = 143
Score = 37.4 bits (85), Expect = 0.034, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMKNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3U9O|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
NviagaN100G AT Cryogenic Temperature
Length = 149
Score = 37.4 bits (85), Expect = 0.034, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEAAAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVGEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHEQHL-RKAEAQAKKEKLNIW 140
Score = 29.3 bits (64), Expect = 9.7, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 272 EPFALDAKYFTEMRVLN-REVRIVLEG---VDKFKNLIGSVFYPDGETAKDLAMELVENG 327
E + +A FT+ V N +++ + + DK+ + + Y DG K + LV G
Sbjct: 52 EKYGPEAAAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYI-YADG---KMVGEALVRQG 107
Query: 328 LAK--YIEWSANMMEEDAKRRLKAADLQAKKTRLRMWT 363
LAK Y+ N E+ L+ A+ QAKK +L +W+
Sbjct: 108 LAKVAYVYKGNNTHEQ----HLRKAEAQAKKEKLNIWS 141
>pdb|3RUZ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V74k At Cryogenic Temperature
Length = 143
Score = 37.4 bits (85), Expect = 0.034, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
E D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 KEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3T16|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
NviagaM98G AT Cryogenic Temperature
Length = 149
Score = 37.4 bits (85), Expect = 0.035, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEAAAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKGVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHEQHL-RKAEAQAKKEKLNIW 140
>pdb|3E5S|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L103k At Cryogenic Temperature
pdb|3E5S|B Chain B, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L103k At Cryogenic Temperature
Length = 143
Score = 37.4 bits (85), Expect = 0.036, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V + GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEAKVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3C1E|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L125k At Cryogenic Temperature
Length = 143
Score = 37.4 bits (85), Expect = 0.036, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + L +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLKRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Query: 271 DEPFALDAKYFTEMRVLN-REVRIVLEG---VDKFKNLIGSVFYPDGETAKDLAMELVEN 326
+E + +A FT+ V N +++ + + DK+ + + Y DG+ + LV
Sbjct: 45 NEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYI-YADGKMVNE---ALVRQ 100
Query: 327 GLAK--YIEWSANMMEEDAKRRLKAADLQAKKTRLRMWT 363
GLAK Y+ + N E KR+ A+ QAKK +L +W+
Sbjct: 101 GLAKVAYV-YKGNNTHEQLKRK---AEAQAKKEKLNIWS 135
>pdb|3TP7|A Chain A, Crystal Structure Of Staphylcoccal Nulease Variant
Delta+phs V99e At Cryogenic Temperature
Length = 143
Score = 37.4 bits (85), Expect = 0.036, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMENEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|4EQO|A Chain A, Crystal Structure Of Staphylococcal Nulease Variant
Delta+phs V99d At Cryogenic Temperature
Length = 143
Score = 37.0 bits (84), Expect = 0.043, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMDNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3SHL|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V74kl25a At Cryogenic Temperature
Length = 143
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K + + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKAMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
E D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 KEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|4DU9|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92aV74A AT CRYOGENIC TEMPERATURE
Length = 143
Score = 37.0 bits (84), Expect = 0.045, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
E D+ G L + V L+ GLAK+ + + + LL +AE A
Sbjct: 68 AEFDKGQRTDKYGRGLAYAYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|4EQP|A Chain A, Crystal Structure Of Staphylococcal Nulease Variant
Delta+phs I72d At Cryogenic Temperature
Length = 143
Score = 37.0 bits (84), Expect = 0.045, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+++ + E
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKDE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|4EOA|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92nV66A AT CRYOGENIC TEMPERATURE
Length = 143
Score = 37.0 bits (84), Expect = 0.047, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 9/128 (7%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 678
PA + + G K++ + + F V P NE+Y EA + K+ + +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMAENAKKIE 67
Query: 679 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 733
VE D+ G L + V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYNYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 734 KSQKLKIW 741
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|2O4X|B Chain B, Crystal Structure Of Human P100 Tudor Domain
Length = 91
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 751 KFEVFYIDYGNQELVPYNKLRPIDPSLSS 779
K VFYIDYGN+E++P +L + P+ S+
Sbjct: 54 KIHVFYIDYGNREVLPSTRLGTLSPAFST 82
>pdb|2F0Q|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V66lI92L
Length = 149
Score = 37.0 bits (84), Expect = 0.050, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+L+ +IEVE D+ G L L+ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMLENAKKIEVEFDKGQRTDKYGRGLAYLYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + H L ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQH-LRKSEAQAKKEKLNIW 140
>pdb|4EQN|A Chain A, Crystal Structure Of Staphylococcal Nulease Variant
Delta+phs V23eI72K AT CRYOGENIC TEMPERATURE
Length = 143
Score = 36.6 bits (83), Expect = 0.065, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKI---LQRDV 675
PA + + G K++ + + F V P NE+Y EA ++ + +++V
Sbjct: 11 PATLIKAIDGDTEKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKKEV 68
Query: 676 EIEV-ETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAK 734
E + + D+ G L ++ V L+ GLAK+ + + + LL +AE AK
Sbjct: 69 EFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQAK 127
Query: 735 SQKLKIW 741
+KL IW
Sbjct: 128 KEKLNIW 134
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 271 DEPFALDAKYFTEMRVLNREVRIVL----EGVDKFKNLIGSVFYPDGETAKDLAMELVEN 326
+E + +A FT+ V N + + V + DK+ + + Y DG+ + LV
Sbjct: 45 NEKYGPEASAFTKKMVENAKKKEVEFDKGQRTDKYGRGLAYI-YADGKMVNE---ALVRQ 100
Query: 327 GLAK--YIEWSANMMEEDAKRRLKAADLQAKKTRLRMWT 363
GLAK Y+ N E+ L+ A+ QAKK +L +W+
Sbjct: 101 GLAKVAYVYKGNNTHEQ----LLRKAEAQAKKEKLNIWS 135
>pdb|2OEO|A Chain A, Cryogenic Crystal Structure Of Staphylococcal Nuclease
Variant Truncated Delta+phs I92d
Length = 138
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 7/133 (5%)
Query: 613 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 672
++ + PA + + G K++ + + F V P NE+Y EA + +
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTKAMVEN 62
Query: 673 -RDVEIEVETVDRTGTFLGSLWESRTNVAVI---LLEAGLAKLQTSFGSDRIPDSHLLEQ 728
+ +E+E + RT + L + A++ L+ GLA + + + + LL
Sbjct: 63 AKKIEVEFDKGQRTDKYGRGLAYDYADGAMVNEALVRQGLAAVAYVYSGNNTHE-QLLRA 121
Query: 729 AEKSAKSQKLKIW 741
AE AK +KL IW
Sbjct: 122 AEAQAKKEKLNIW 134
>pdb|1F2M|A Chain A, Simplification Of A Protein Loop In Staphylococcal
Nuclease
Length = 149
Score = 36.6 bits (83), Expect = 0.065, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ ++ + + H L ++E AK +KL IW
Sbjct: 111 VAYAYAPNNTHEQH-LRKSEAQAKKEKLNIW 140
>pdb|2EYP|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T120v
Length = 149
Score = 36.2 bits (82), Expect = 0.088, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + + H L ++E AK +KL IW
Sbjct: 111 VAYVYKPNNVHEQH-LRKSEAQAKKEKLNIW 140
>pdb|2F0H|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant V66l
Length = 149
Score = 35.8 bits (81), Expect = 0.096, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+L+ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMLENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1F2Y|A Chain A, Simplification Of A Protein Loop In Staphylococcal
Nuclease
Length = 149
Score = 35.8 bits (81), Expect = 0.099, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + H L ++E AK +KL IW
Sbjct: 111 VAAVYAPNNTHEQH-LRKSEAQAKKEKLNIW 140
>pdb|1EY7|A Chain A, Structure Of S. Nuclease Stabilizing Mutant S128a
Length = 149
Score = 35.8 bits (81), Expect = 0.100, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL +AE AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKAEAQAKKEKLNIW 140
Score = 29.3 bits (64), Expect = 9.6, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 272 EPFALDAKYFTEMRVLN-REVRIVLEG---VDKFKNLIGSVFYPDGETAKDLAMELVENG 327
E + +A FT+ V N +++ + + DK+ + + Y DG+ + LV G
Sbjct: 52 EKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYI-YADGKMVNE---ALVRQG 107
Query: 328 LAK--YIEWSANMMEEDAKRRLKAADLQAKKTRLRMWT 363
LAK Y+ N E+ L+ A+ QAKK +L +W+
Sbjct: 108 LAKVAYVYKPNNTHEQ----HLRKAEAQAKKEKLNIWS 141
>pdb|3TP6|A Chain A, Crystal Structure Of Staphylcoccal Nulease Variant
Delta+phs L36eL103K AT CRYOGENIC TEMPERATURE
Length = 143
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 649 VRCPGRNERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVIL 703
V P NE+Y EA + K+++ +IEVE D+ G L ++ V
Sbjct: 39 VDTPEFNEKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEAK 97
Query: 704 LEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ GLAK+ + + + LL +AE AK +KL IW
Sbjct: 98 VRQGLAKVAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 134
>pdb|1SYE|A Chain A, Engineering Alternative Beta-Turn Types In Staphylococcal
Nuclease
pdb|1SYF|A Chain A, Engineering Alternative Beta-Turn Types In Staphylococcal
Nuclease
Length = 149
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + ++ + H L ++E AK +KL IW
Sbjct: 111 VAYVYKTNNTHEQH-LRKSEAQAKKEKLNIW 140
>pdb|4EVO|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
NviagaE122G AT Cryogenic Temperature
Length = 149
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEAAAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + HL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHGQHL-RKAEAQAKKEKLNIW 140
>pdb|1KAA|A Chain A, Stress And Strain In Staphylococcal Nuclease
Length = 136
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 47 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 105
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + H L ++E AK +KL IW
Sbjct: 106 VAYVYAPNNTHEQH-LRKSEAQAKKEKLNIW 135
>pdb|2F0S|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V66lI92V
Length = 149
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+L+ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMLENAKKIEVEFDKGQRTDKYGRGLAYVYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1KDC|A Chain A, Stabilization Of A Strained Protein Loop Conformation
Through Protein Engineering
Length = 149
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW-ENYVES 747
+ + + + H L ++E AK +KL IW EN +S
Sbjct: 111 VAYVYNPNNTHEQH-LRKSEAQAKKEKLNIWSENDADS 147
>pdb|2EY2|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T41c
Length = 149
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 15/134 (11%)
Query: 619 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRN------ERYSNEALLLMRQKILQ 672
PA + + G K++ + + F V CP E+Y EA + K+++
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDCPETKHPKKGVEKYGPEASAFTK-KMVE 67
Query: 673 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 727
+IEVE D+ G L ++ V L+ GLAK+ + + + HL
Sbjct: 68 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQHL-R 126
Query: 728 QAEKSAKSQKLKIW 741
++E AK +KL IW
Sbjct: 127 KSEAQAKKEKLNIW 140
>pdb|3DMU|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Phs
T62k At Cryogenic Temperature
Length = 149
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA ++K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAF-KKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|2QDB|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
E75qD21NT33VT41IS59AP117GS128A AT 100 K
Length = 149
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEV+ D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEAAAFTK-KMVENAKKIEVQFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHEQHL-RKAEAQAKKEKLNIW 140
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 272 EPFALDAKYFTEMRVLN-REVRIVLEG---VDKFKNLIGSVFYPDGETAKDLAMELVENG 327
E + +A FT+ V N +++ + + DK+ + + Y DG+ + LV G
Sbjct: 52 EKYGPEAAAFTKKMVENAKKIEVQFDKGQRTDKYGRGLAYI-YADGKMVNE---ALVRQG 107
Query: 328 LAK--YIEWSANMMEEDAKRRLKAADLQAKKTRLRMWT 363
LAK Y+ N E+ L+ A+ QAKK +L +W+
Sbjct: 108 LAKVAYVYKGNNTHEQ----HLRKAEAQAKKEKLNIWS 141
>pdb|2RDF|A Chain A, Crystal Structure Of Staphyloccocal Nuclease ViaganE75A
Variant At Cryogenic Temperature
Length = 149
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEV-----ETVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEV + D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEAAAFTK-KMVENAKKIEVAFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHEQHL-RKAEAQAKKEKLNIW 140
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 272 EPFALDAKYFTEMRVLN-REVRIVLEG---VDKFKNLIGSVFYPDGETAKDLAMELVENG 327
E + +A FT+ V N +++ + + DK+ + + Y DG+ + LV G
Sbjct: 52 EKYGPEAAAFTKKMVENAKKIEVAFDKGQRTDKYGRGLAYI-YADGKMVNE---ALVRQG 107
Query: 328 LAK--YIEWSANMMEEDAKRRLKAADLQAKKTRLRMWT 363
LAK Y+ N E+ L+ A+ QAKK +L +W+
Sbjct: 108 LAKVAYVYKGNNTHEQ----HLRKAEAQAKKEKLNIWS 141
>pdb|2F0T|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V66lV99I
Length = 149
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+L+ +IEVE D+ G L ++ + L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMLENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMINEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1SYG|A Chain A, Engineering Alternative Beta-Turn Types In Staphylococcal
Nuclease
Length = 149
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + ++ + H L ++E AK +KL IW
Sbjct: 111 VAYVYKANNTHEQH-LRKSEAQAKKEKLNIW 140
>pdb|2OF1|A Chain A, Cryogenic Crystal Structure Of The Staphylococcal Nuclease
Variant Truncated Delta+phs I92w
Length = 138
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 7/133 (5%)
Query: 613 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 672
++ + PA + + G K++ + + F V P NE+Y EA + +
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTKAMVEN 62
Query: 673 -RDVEIEVET---VDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQ 728
+ +E+E + D+ G L + V L+ GLA + + + + LL
Sbjct: 63 AKKIEVEFDKGQRTDKYGRGLAYWYADGAMVNEALVRQGLAAVAYVYKGNNTHE-QLLRA 121
Query: 729 AEKSAKSQKLKIW 741
AE AK +KL IW
Sbjct: 122 AEAQAKKEKLNIW 134
>pdb|2EYJ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T62v
Length = 149
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA ++ K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFVK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1KDA|A Chain A, Stabilization Of A Strained Protein Loop Conformation
Through Protein Engineering
Length = 149
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW-ENYVES 747
+ + + + HL ++E AK +KL IW EN +S
Sbjct: 111 VAYVYDPNNTHEQHL-RKSEAQAKKEKLNIWSENDADS 147
>pdb|1EYC|A Chain A, Structure Of S. Nuclease Stabilizing Quintuple Mutant
T41iS59AP117GH124LS128A
Length = 149
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEAAAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|1EZ6|A Chain A, Structure Of S. Nuclease Stabilizing Sextuple Mutant
T33vT41IS59AP117GH124LS128A
Length = 149
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEAAAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|2SNS|A Chain A, Staphylococcal Nuclease. Proposed Mechanism Of Action
Based On Structure Of Enzyme-Thymidine
3(Prime),5(Prime)-Biphosphate-Calcium Ion Complex At
1.5-Angstroms Resolution
Length = 149
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFNKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW-ENYVES 747
+ + + + HL ++E AK +KL IW EN +S
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIWSENDADS 147
>pdb|1NSN|S Chain S, The Crystal Structure Of Antibody N10-Staphylococcal
Nuclease Complex At 2.9 Angstroms Resolution
Length = 149
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW-ENYVES 747
+ + + + HL ++E AK +KL IW EN +S
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIWSENDADS 147
>pdb|1EY4|A Chain A, Structure Of S. Nuclease Stabilizing Mutant S59a
Length = 149
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEAAAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1SYC|A Chain A, Engineering Alternative Beta-Turn Types In Staphylococcal
Nuclease
pdb|1SYD|A Chain A, Engineering Alternative Beta-Turn Types In Staphylococcal
Nuclease
Length = 149
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKGNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2F0V|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V23lV66LI72L
Length = 149
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+L+ ++EVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMLENAKKLEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2F0W|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V23iL25IV66LI72L
Length = 149
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+L+ ++EVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMLENAKKLEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2F0G|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant V66i
Length = 149
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMIENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|4G57|A Chain A, Staphylococcal Nuclease Double Mutant I72l, I92l
Length = 135
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ ++EVE D+ G L L+ V L+ GLAK
Sbjct: 46 EKYGPEASAFTK-KMVENAKKLEVEFDKGQRTDKYGRGLAYLYADGKMVNEALVRQGLAK 104
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + H L ++E AK +KL IW
Sbjct: 105 VAYVYKPNNTHEQH-LRKSEAQAKKEKLNIW 134
>pdb|2EXZ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T22c
Length = 149
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1NUC|A Chain A, Staphylococcal Nuclease, V23c Variant
Length = 149
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1ENA|A Chain A, Crystal Structures Of The Binary Ca2+ And Pdtp Complexes
And The Ternary Complex Of The Asp 21->glu Mutant Of
Staphylococcal Nuclease. Implications For Catalysis And
Ligand Binding
pdb|2ENB|A Chain A, Crystal Structures Of The Binary Ca2+ And Pdtp Complexes
And The Ternary Complex Of The Asp 21->glu Mutant Of
Staphylococcal Nuclease. Implications For Catalysis And
Ligand Binding
Length = 135
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 46 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 104
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 105 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 134
>pdb|1KDB|A Chain A, Stabilization Of A Strained Protein Loop Conformation
Through Protein Engineering
Length = 149
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW-ENYVES 747
+ + + + HL ++E AK +KL IW EN +S
Sbjct: 111 VAYVYEPNNTHEQHL-RKSEAQAKKEKLNIWSENDADS 147
>pdb|1EY9|A Chain A, Structure Of S. Nuclease Stabilizing Quadruple Mutant
T41iP117GH124LS128A
Length = 149
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|1EYA|A Chain A, Structure Of S. Nuclease Stabilizing Quintuple Mutant
T33vT41IP117GH124LS128A
Length = 149
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|1II3|A Chain A, Structure Of S. Nuclease Quintuple Mutant
V23iV66LI72LI92LV99L
Length = 149
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+L+ ++EVE D+ G L L+ + L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMLENAKKLEVEFDKGQRTDKYGRGLAYLYADGKMLNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1STA|A Chain A, Accommodation Of Insertion Mutations On The Surface And In
The Interior Of Staphylococcal Nuclease
Length = 151
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 54 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 112
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 113 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 142
>pdb|1EY8|A Chain A, Structure Of S. Nuclease Stabilizing Triple Mutant
P117gH124LS128A
pdb|2LKV|A Chain A, Staphylococcal Nuclease Phs Variant
Length = 149
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|1IHZ|A Chain A, Structure Of S. Nuclease Mutant Quintuple Mutant
V23lV66LI72LI92LV99L
Length = 149
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+L+ ++EVE D+ G L L+ + L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMLENAKKLEVEFDKGQRTDKYGRGLAYLYADGKMLNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2RKS|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Phs
L38k At Cryogenic Temperature
Length = 149
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|3D6C|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Phs
L38e At Cryogenic Temperature
Length = 149
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|1SNM|A Chain A, Active Site Mutant Glu-43 (Right Arrow) Asp In
Staphylococcal Nuclease Displays Nonlocal Structural
Changes
Length = 149
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2EYM|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T120c
Length = 149
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNCHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1STB|A Chain A, Accommodation Of Insertion Mutations On The Surface And In
The Interior Of Staphylococcal Nuclease
Length = 150
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 53 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 111
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 112 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 141
>pdb|2EY1|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T22v
Length = 149
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2EY6|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T41v
Length = 149
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2EYF|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T44v
Length = 149
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2F0F|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant L25i
Length = 149
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1EY0|A Chain A, Structure Of Wild-Type S. Nuclease At 1.6 A Resolution
pdb|1EYD|A Chain A, Structure Of Wild-Type S. Nuclease At 1.7 A Resolution
pdb|1SNC|A Chain A, The Crystal Structure Of The Ternary Complex Of
Staphylococcal Nuclease, Ca2+, And The Inhibitor PdTp,
Refined At 1.65 Angstroms
pdb|1STG|A Chain A, Two Distinctly Different Metal Binding Modes Are Seen In
X- Ray Crystal Structures Of Staphylococcal Nuclease-
Cobalt(Ii)-Nucleotide Complexes
pdb|1STH|A Chain A, Two Distinctly Different Metal Binding Modes Are Seen In
X- Ray Crystal Structures Of Staphylococcal Nuclease-
Cobalt(Ii)-Nucleotide Complexes
pdb|1STN|A Chain A, The Crystal Structure Of Staphylococcal Nuclease Refined
At 1.7 Angstroms Resolution
Length = 149
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1EY5|A Chain A, Structure Of S. Nuclease Stabilizing Mutant T33v
pdb|1EZ8|A Chain A, Structure Of S. Nuclease Stabilizing Mutant T33v
Length = 149
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2F0K|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V23iL25I
Length = 149
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1A2T|A Chain A, Staphylococcal Nuclease, B-Mercaptoethanol Disulfide To
V23c Variant
pdb|1A2U|A Chain A, Staphylococcal Nuclease, V23c Variant, Complex With 1-N-
Butane Thiol And 3',5'-Thymidine Diphosphate
pdb|1A3T|A Chain A, Staphylococcal Nuclease, V23c Variant, Complex With 2-
Fluoroethane Thiol And 3',5'-Thymidine Diphosphate
pdb|1A3U|A Chain A, Staphylococcal Nuclease, Cyclohexane Thiol Disulfide To
V23c Variant
pdb|1A3V|A Chain A, Staphylococcal Nuclease, Cyclopentane Thiol Disulfide To
V23c Variant
pdb|1AEX|A Chain A, Staphylococcal Nuclease, Methane Thiol Disulfide To V23c
Variant
pdb|2NUC|A Chain A, Staphlococcal Nuclease, Ethane Thiol Disulfide To V23c
Variant
pdb|3NUC|A Chain A, Staphlococcal Nuclease, 1-N-Propane Thiol Disulfide To
V23c Variant
pdb|5NUC|A Chain A, Staphylococcal Nuclease, 1-N-Pentane Thiol Disulfide To
V23c Variant
Length = 149
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2F0E|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant V23l
Length = 149
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1ENC|A Chain A, Crystal Structures Of The Binary Ca2+ And Pdtp Complexes
And The Ternary Complex Of The Asp 21->glu Mutant Of
Staphylococcal Nuclease. Implications For Catalysis And
Ligand Binding
Length = 149
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1EY6|A Chain A, Structure Of S. Nuclease Stabilizing Mutant T41i
Length = 149
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2EY5|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T41s
Length = 149
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2F0O|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V66iI72V
Length = 149
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 656 ERYSNEALLLMRQKILQ-RDVEIEVETVDRT---GTFLGSLWESRTNVAVILLEAGLAKL 711
E+Y EA ++ I + VE+E + RT G L ++ V L+ GLAK+
Sbjct: 52 EKYGPEASAFTKKMIENAKKVEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKV 111
Query: 712 QTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + HL ++E AK +KL IW
Sbjct: 112 AYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2F0P|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V66iV99I
Length = 149
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ + L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMIENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMINEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1SYB|A Chain A, Transfer Of A Beta-Turn Structure To A New Protein Context
Length = 150
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 53 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 111
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 112 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 141
>pdb|2F0D|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant I92v
Length = 149
Score = 34.3 bits (77), Expect = 0.28, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYVYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2EYH|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T62s
Length = 149
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFSK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2PQE|A Chain A, Solution Structure Of Proline-Free Mutant Of
Staphylococcal Nuclease
Length = 149
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGAEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + LL ++E AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKSEAQAKKEKLNIW 140
>pdb|2PW5|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
V66yP117GH124LS128A AT ROOM TEMPERATURE
pdb|2PW7|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
V66yP117GH124LS128A AT 100K
Length = 149
Score = 34.3 bits (77), Expect = 0.32, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+ + +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMYENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|1EQV|A Chain A, Simplification Of A Protein Loop In Staphylococcal
Nuclease
Length = 136
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 47 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 105
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + H L ++E AK +KL IW
Sbjct: 106 VAAAAAPNNTHEQH-LRKSEAQAKKEKLNIW 135
>pdb|2F0U|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V23iL25II72V
Length = 149
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ ++EVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKVEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2F0M|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V23lI72V
Length = 149
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ ++EVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKVEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2F0J|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant I72v
Length = 149
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ ++EVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKVEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2EYL|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T82s
Length = 149
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRSDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2EYO|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T120s
Length = 149
Score = 33.9 bits (76), Expect = 0.36, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNSHEQHL-RKSEAQAKKEKLNIW 140
>pdb|4E6I|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Nviaga V99g At Cryogenic Temperature
pdb|4E6I|B Chain B, Crystal Structure Of Staphylococcal Nuclease Variant
Nviaga V99g At Cryogenic Temperature
Length = 149
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ L+ GLAK
Sbjct: 52 EKYGPEAAAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMGNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHEQHL-RKAEAQAKKEKLNIW 140
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 272 EPFALDAKYFTEMRVLN-REVRIVLEG---VDKFKNLIGSVFYPDGETAKDLAMELVENG 327
E + +A FT+ V N +++ + + DK+ + + Y DG+ + LV G
Sbjct: 52 EKYGPEAAAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYI-YADGKMGNE---ALVRQG 107
Query: 328 LAK--YIEWSANMMEEDAKRRLKAADLQAKKTRLRMWT 363
LAK Y+ N E+ L+ A+ QAKK +L +W+
Sbjct: 108 LAKVAYVYKGNNTHEQ----HLRKAEAQAKKEKLNIWS 141
>pdb|1SNQ|A Chain A, Protein Stability In Staphylococcal Nuclease
Length = 149
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + LL ++E AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKSEAQAKKEKLNIW 140
>pdb|2F0N|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
L25iI72L
Length = 149
Score = 33.9 bits (76), Expect = 0.43, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ ++EVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKLEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2F0I|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant I72l
Length = 149
Score = 33.9 bits (76), Expect = 0.43, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ ++EVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKLEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2F0L|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V23lI72L
Length = 149
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ ++EVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKLEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1SNP|A Chain A, Protein Stability In Staphylococcal Nuclease
Length = 149
Score = 33.9 bits (76), Expect = 0.45, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + LL ++E AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKSEAQAKKEKLNIW 140
>pdb|2KQ3|A Chain A, Solution Structure Of Snase140
Length = 140
Score = 33.5 bits (75), Expect = 0.46, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + LL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHE-QLLRKSEAQAKKEKLNIW 140
>pdb|2PYK|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
V66qP117GH124LS128A AT ROOM TEMPERATURE
pdb|2PZT|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
V66qP117GH124LS128A AT 100 K
Length = 149
Score = 33.5 bits (75), Expect = 0.47, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+ + +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMQENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|1JOK|A Chain A, Averaged Structure For Staphylococcal Nuclease-H124l In
Ternary Complex With Ca2+ And
Thymidine-3',5'-Bisphosphate
pdb|1JOO|A Chain A, Averaged Structure For Unligated Staphylococcal Nuclease-
H124l
pdb|1JOQ|A Chain A, Ensemble Structures For Staphylococcal Nuclease-H124l In
Ternary Complex With Ca2+ And
Thymidine-3',5'-Bisphosphate
pdb|1JOR|A Chain A, Ensemble Structures For Unligated Staphylococcal Nuclease-
H124l
pdb|1SNO|A Chain A, Protein Stability In Staphylococcal Nuclease
Length = 149
Score = 33.5 bits (75), Expect = 0.53, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + LL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHE-QLLRKSEAQAKKEKLNIW 140
>pdb|2SNM|A Chain A, In A Staphylococcal Nuclease Mutant The Side-Chain Of A
Lysine Replacing Valine 66 Is Fully Buried In The
Hydrophobic Core
Length = 149
Score = 33.5 bits (75), Expect = 0.55, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+ + +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMKENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1U9R|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V66eP117GH124LS128A AT ROOM TEMPERATURE
Length = 149
Score = 33.5 bits (75), Expect = 0.59, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+ + +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMEENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|1F2Z|A Chain A, Simplification Of A Protein Loop In Staphylococcal
Nuclease
Length = 149
Score = 33.1 bits (74), Expect = 0.63, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + HL ++E AK +KL IW
Sbjct: 111 VAYVAAPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2PZU|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
V66nP117GH124LS128A AT CRYOGENIC TEMPERATURE
pdb|2PZW|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
V66nP117GH124LS128A AT ROOM TEMPERATURE
Length = 149
Score = 33.1 bits (74), Expect = 0.67, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+ + +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMNENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|2OXP|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V66dP117GH124LS128A
Length = 149
Score = 33.1 bits (74), Expect = 0.71, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+ + +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMDENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|4H7B|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
I72vV99L
Length = 149
Score = 33.1 bits (74), Expect = 0.75, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ ++EVE D+ G L ++ + L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKVEVEFDKGQRTDKYGRGLAYIYADGKMLNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|4AQS|A Chain A, Laminin Beta1 Ln-Le1-4 Structure
Length = 525
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 721 PDSHLLEQAEKSAKSQKLKIW---ENYVESVNDKFEVFYIDYGNQELVPYNKLRP 772
PDSHL+E + +LKIW EN VE+V + ++ + ++ + RP
Sbjct: 74 PDSHLIENVVTTFAPNRLKIWWQSENGVENVTIQLDLEAEFHFTHLIMTFKTFRP 128
>pdb|3NBU|A Chain A, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|B Chain B, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|C Chain C, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|D Chain D, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|E Chain E, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|F Chain F, Crystal Structure Of Pgi Glucosephosphate Isomerase
Length = 549
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 750 DKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLA 790
D+F F + +Q LV Y+K R + +L+ LA+ C LA
Sbjct: 36 DRFSKFSATFDDQMLVDYSKNRITEETLAKLQDLAKECDLA 76
>pdb|1SND|A Chain A, Staphylococcal Nuclease Dimer Containing A Deletion Of
Residues 114- 119 Complexed With Calcium Chloride And
The Competitive Inhibitor
Deoxythymidine-3',5'-Diphosphate
pdb|1SND|B Chain B, Staphylococcal Nuclease Dimer Containing A Deletion Of
Residues 114- 119 Complexed With Calcium Chloride And
The Competitive Inhibitor
Deoxythymidine-3',5'-Diphosphate
Length = 143
Score = 29.6 bits (65), Expect = 8.4, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 656 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 710
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 711 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 741
+ + + HL ++E AK +KL IW
Sbjct: 111 VAYTH------EQHL-RKSEAQAKKEKLNIW 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,161,448
Number of Sequences: 62578
Number of extensions: 858098
Number of successful extensions: 2686
Number of sequences better than 100.0: 171
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 162
Number of HSP's that attempted gapping in prelim test: 2315
Number of HSP's gapped (non-prelim): 492
length of query: 863
length of database: 14,973,337
effective HSP length: 107
effective length of query: 756
effective length of database: 8,277,491
effective search space: 6257783196
effective search space used: 6257783196
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)