Query 002945
Match_columns 863
No_of_seqs 421 out of 2390
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 13:55:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2039 Transcriptional coacti 100.0 3.4E-67 7.3E-72 633.5 34.3 714 10-862 3-823 (875)
2 KOG2039 Transcriptional coacti 99.9 2.1E-27 4.5E-32 288.3 18.4 534 8-746 317-866 (875)
3 smart00318 SNc Staphylococcal 99.9 3.5E-24 7.6E-29 208.3 18.4 131 11-150 2-137 (138)
4 smart00318 SNc Staphylococcal 99.9 4.8E-24 1E-28 207.3 18.4 138 186-364 1-138 (138)
5 PRK06518 hypothetical protein; 99.9 1.1E-23 2.4E-28 211.1 17.8 138 5-152 17-157 (177)
6 cd00175 SNc Staphylococcal nuc 99.9 2.2E-23 4.8E-28 200.2 16.5 123 18-150 1-128 (129)
7 cd00175 SNc Staphylococcal nuc 99.9 4.8E-23 1E-27 197.9 16.4 129 194-364 1-129 (129)
8 PRK06518 hypothetical protein; 99.8 8.5E-20 1.8E-24 183.1 17.1 136 183-364 19-156 (177)
9 COG1525 Micrococcal nuclease ( 99.8 1.8E-19 4E-24 185.1 15.6 127 13-152 43-172 (192)
10 PF00565 SNase: Staphylococcal 99.8 9.4E-20 2E-24 169.1 10.5 107 42-151 1-108 (108)
11 PF00565 SNase: Staphylococcal 99.8 1.7E-18 3.7E-23 160.7 11.0 106 213-364 1-108 (108)
12 COG1525 Micrococcal nuclease ( 99.7 3E-17 6.4E-22 168.8 14.2 129 188-365 42-172 (192)
13 PF00567 TUDOR: Tudor domain; 98.3 2.9E-07 6.3E-12 86.2 2.4 54 738-791 65-121 (121)
14 smart00333 TUDOR Tudor domain. 96.5 0.0017 3.6E-08 53.1 2.6 40 738-777 15-57 (57)
15 cd04508 TUDOR Tudor domains ar 95.7 0.0057 1.2E-07 48.1 2.0 34 739-772 12-48 (48)
16 KOG2279 Kinase anchor protein 94.7 0.0085 1.8E-07 68.7 -0.1 62 752-814 488-549 (608)
17 smart00743 Agenet Tudor-like d 86.2 0.51 1.1E-05 39.0 2.2 28 749-776 30-59 (61)
18 PF06003 SMN: Survival motor n 58.3 6.6 0.00014 42.7 2.3 28 749-776 97-124 (264)
19 KOG2279 Kinase anchor protein 35.2 27 0.00059 41.1 2.6 99 750-861 392-493 (608)
20 COG2134 Cdh CDP-diacylglycerol 34.7 53 0.0011 34.1 4.3 65 24-95 64-136 (252)
21 PF00567 TUDOR: Tudor domain; 27.5 11 0.00025 34.4 -1.7 58 561-648 64-121 (121)
22 PRK05471 CDP-diacylglycerol py 26.3 56 0.0012 35.2 3.0 67 21-95 61-136 (252)
23 PF14468 DUF4427: Protein of u 24.3 78 0.0017 30.2 3.2 73 64-143 10-89 (132)
24 PRK12442 translation initiatio 24.0 1.5E+02 0.0033 26.7 4.7 31 187-218 8-38 (87)
25 TIGR00672 cdh CDP-diacylglycer 23.3 44 0.00096 35.9 1.6 67 21-95 60-135 (250)
26 TIGR00008 infA translation ini 22.1 1.8E+02 0.0039 25.0 4.7 31 187-218 6-36 (68)
No 1
>KOG2039 consensus Transcriptional coactivator p100 [Transcription]
Probab=100.00 E-value=3.4e-67 Score=633.48 Aligned_cols=714 Identities=46% Similarity=0.733 Sum_probs=610.9
Q ss_pred ceEEEEEeEecCCCEEEEeeCCCCCCCCCCeeEEEEEeccCCCCCCCC-CCCChhHHHHHHHHHhhcCCCeEEEEEceec
Q 002945 10 GWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRG-GLDEPFAWDSREFLRKLCIGKEVTFRVDYAV 88 (863)
Q Consensus 10 ~~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~vrL~~IdaPe~~~~~-~~~ep~a~eAre~Lr~lliGk~V~~~~~~~~ 88 (863)
.+..|.|++|.|||.+++++. +..+++++..++|+++.+|++.+++ +-++||+|++++|+|++++||.|.|..++-.
T Consensus 3 ~~~~~~v~~v~s~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~p~~~~~~~~~~~~~~~k~~~v~~~~~~ 80 (875)
T KOG2039|consen 3 QRLVGYVKAVLSGDAFVIRGS--PRAGPPPEFQINLSNVKAPNEARRDKGVDEPFAWESREFLRKSEIGKEVAVTRDQMS 80 (875)
T ss_pred eEEeeeEEEEeccCccEEEcc--cccCCCCCceEEEeecCCccccccCCCCCCCcChhhHHHHHHHhccceeeeEEeeec
Confidence 355799999999999999984 4568889999999999999999874 2379999999999999999999999999844
Q ss_pred cCCCcEEEEEEeCCccHHHHHHHcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHcCCCCcCCCCCCcccccccCCCCcC
Q 002945 89 PNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAI 168 (863)
Q Consensus 89 ~~~gR~~g~V~~~g~nv~~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~~~GiWs~~~~~~~~~~r~~~~~~~ 168 (863)
..++|.+|.+++++.+.++.|+..||+.+++... ...++...+...|.+|++.++|+|+. .....+++.++
T Consensus 81 ~~~~~e~~~~~~~~~~~a~~lv~~g~~~~~~~~~---~~~~~~~~l~~~~~~~k~~~~g~w~~----~~~~~~~~~~~-- 151 (875)
T KOG2039|consen 81 ANNGREVGFIYLGDENSAESLVKEGLLDVRDEGV---RNSSYFKTLDEVEVQAKQSGRGIWSK----LDHFIRNLKDS-- 151 (875)
T ss_pred cccccccceeecCcchhHHHHHhccCCccccccc---ccchhhhhhhhhhhhhhhhccccccc----cccceeecccc--
Confidence 5679999999999999999999999999987763 22678889999999999999999993 23345778776
Q ss_pred CCCchhhHHHHhhhhcCCcccEEEEEeccCC-EEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccc
Q 002945 169 GDSSNFNAMALLDANKGRPMQGIVEQARDGS-TLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAE 247 (863)
Q Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~~Ve~V~dG~-t~rv~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~g~~~~~~ 247 (863)
..++..|+..+.++++.++||+|++|+ +.||.+.+....++++|+|+.||.+..+. +|
T Consensus 152 ----~~~p~~~~~~~~~~~~~~~ve~v~~~~~~~rv~~~p~~~~~~v~lSg~~~P~~~~~s-----------~~------ 210 (875)
T KOG2039|consen 152 ----ALNPAELVDAVGGKPVNAIVEHVRDGEDTVRVLLRPELKYVTVRLSGKRCPSQGPPS-----------DG------ 210 (875)
T ss_pred ----ccccHHHHHhcCCceeeeehhhccChhhhhhHHhccccceeEEecccccCCCCCCCC-----------CC------
Confidence 346788999888999999999999999 68888778888899999999999987532 11
Q ss_pred cccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHHccCceEEEEEeeecCCCCEEEEEEecCCCChhHHHHHHHhcC
Q 002945 248 AVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENG 327 (863)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~ep~g~eAk~f~~~~ll~r~V~v~~~~~Dkygr~la~V~~~~g~~~~di~~~LL~~G 327 (863)
.+...+||+.+|+.|++.++++|.+.|.+.+...+..++|+|.+++|+ +++.|+.+|
T Consensus 211 -------------------~~~~~~~~~~~a~~f~~~~~~~r~~~i~~~~~~~~~~~~g~v~~~~~~----i~~~~~~~~ 267 (875)
T KOG2039|consen 211 -------------------SPSVPDPFADEAKLFSEDRLLQRAVAIPLESEENYVFFVGDVLYPDGN----IALELLSEG 267 (875)
T ss_pred -------------------CCCCCCcHHHHHHHhcccchhhhceeeeeccccccccccccccccccc----eeeehhccc
Confidence 012358999999999999999999999999998887889999999984 999999999
Q ss_pred cEEEEecccccchHHHHHHHHHHHHHHHHhcCcc-CcCCCCCCCCcccccccceeeEEEEEeeCcEEEEEcCCCCCCCCc
Q 002945 328 LAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRM-WTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNAL 406 (863)
Q Consensus 328 lA~v~~~~~~~~~~~~~~~l~~AE~~Ak~~k~Gi-W~~~~~~~~~~~~~~~~~~~g~V~~V~sgd~i~I~~~~~~~~~~~ 406 (863)
++++.+|+....+.+....++.+|..++..+..+ |++|..+....+....+.|.+.|+++.++|++.+..+. |+
T Consensus 268 ~~k~v~~s~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~v~e~~~~d~~~~~~~s---g~-- 342 (875)
T KOG2039|consen 268 LAKCVDWSKNEIPCGAAKKLRAAERLAKEHRLRVLWKNYQVPLSTSESIDDKGFSGKVVEVLVSDCVLVALDS---GS-- 342 (875)
T ss_pred hHHHHHhhhhccCchhhhhhhHHhhccchhHHHHHHhccccccchheeeccccccceeeeeeccCceEEecCC---CC--
Confidence 9999999999887777677999999999999999 99999988877766678899999999999999999865 22
Q ss_pred cceEEEeeeccCCCCCCCCCCCc--cchhhHHhHHHHHhhccCcEEEEEEeeeecccccccccccCCCCCCCCCCCCCcc
Q 002945 407 AERRVNLSSIRCPKIGNPRKDEK--PAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTK 484 (863)
Q Consensus 407 ~e~~v~Lssi~~P~~~~~~~~~~--~e~~~~earEflR~~~iGk~V~v~vdy~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 484 (863)
+.++.+++|+.||.+++.+..+ .-||+++|+||+|+++||++|.++++|.++.. ..
T Consensus 343 -~~~~~~~~i~~pr~~~~~~~~~p~~~~~q~~a~~~~~~~~i~~~v~~~~~~~~~~~----------------~~----- 400 (875)
T KOG2039|consen 343 -ENKLFLSSIRLPRAGEPGRSLKPYISPVQLVAREFLRKKLIGKRVILQMDVIRPRR----------------EN----- 400 (875)
T ss_pred -ceEEEeeeccCccccccccccCCccccHHHHhhhhhhhhccCceeeEeeecccccc----------------cc-----
Confidence 7899999999999444333333 48999999999999999999999999988741 00
Q ss_pred cccccCCCCCCCccccccceeeeeeeEEecCCCCCCCCCchhhhccccCCCCCCcchhHHHHhcccceeeecC-Cccccc
Q 002945 485 GQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHR-DFEERS 563 (863)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~nvae~lv~~G~a~v~~~r-~~~~~s 563 (863)
+.. .. +.+.+ ..|.|+|+.++.+|++++++|| ++..++
T Consensus 401 ----------------~~~--~~-c~~~~----------------------~~~~~~a~~~~~kg~~~~v~~~~~~~~~s 439 (875)
T KOG2039|consen 401 ----------------VPT--KV-CALPL----------------------GGGKNVAELLVKKGLATVVRKRQDDEQRS 439 (875)
T ss_pred ----------------ccc--cc-ccccC----------------------CCcceeeEEEecccchhhhhhHhhhhhhc
Confidence 110 01 11111 1368999999999999999999 467779
Q ss_pred HHHHHHHHHHHHHHhcCCCcCCCCCCCceEEEeCCCCcc-ccccccccccccCCccceEEEEEecCCEEEEEecCCCceE
Q 002945 564 NYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPV-KKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSI 642 (863)
Q Consensus 564 ~~YraLv~ae~~A~~~~~Gi~s~k~~~~~~~~D~~~gn~-~~ak~~l~~~~r~~~l~~~Ve~V~dG~~~~v~lp~~~~~i 642 (863)
..|+.++.+|..+..+++|+|+.+..+.+.+.+.+. .. .++..+++++++...+..+|+++++|+++++++|++.|.+
T Consensus 440 ~~~d~ll~~E~~~~~~~~~~~s~~~~~~~~~~~~~~-~i~~n~~~~~~~~~~~~~~~~~v~~~~~gs~~~~~~pk~~~~~ 518 (875)
T KOG2039|consen 440 SHYDLLLVAEAIAIKGKKGCHSKKLDPTLRITDLTV-DIVRNKVQFLPSLDRGNRVEAIVEAVISGSRLRLYIPKETCYC 518 (875)
T ss_pred chhhhhhcchHHHHhhhhhhcccCCCcceeechhhh-hhhcCcEEeehhhccccceeeeeeeeeccccceeccCCcceeE
Confidence 999999999999999999999987665556777753 33 3344899999999999999999999999999999999999
Q ss_pred EEEEeeecCCC-------CCchhHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEeC-CccHHHHHHHcCCEEEeee
Q 002945 643 AFSFSGVRCPG-------RNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES-RTNVAVILLEAGLAKLQTS 714 (863)
Q Consensus 643 ~~~LaGI~~P~-------~~e~~~~EA~~~l~~~ll~r~V~v~v~~~D~~G~~~g~l~~~-~~ni~~~Lv~~GlA~v~~~ 714 (863)
+|.++|++||+ .+++|+++|..+++.+++++++.+.+..+|+.|+|+++.+.+ +.++...++++||+.++
T Consensus 519 ~~~~~g~~~~~~~r~~~~~~e~~~~~~~~~~~~~vl~~~~~l~v~~~~~~~~~l~~~~~~~~~~~s~~~~e~~L~~~~-- 596 (875)
T KOG2039|consen 519 QFALAGIDCPSGARNDVQEGEPFSEEAIEFTRSLVLQREVELEVEITDKNGNFLGSLYEDSKTNLSLKLLEQGLAPEH-- 596 (875)
T ss_pred EEeeccccCcccccccccccCCccHHHHHHhhhheeccceEEEEeeeccCccccccccccccccchhhhhhhhcCccc--
Confidence 99999999996 488999999999999999999999999999999999999997 89999999999999996
Q ss_pred cCCCCCCChHHHHHHHHHHH-hccccccccccc-----------------------------------------------
Q 002945 715 FGSDRIPDSHLLEQAEKSAK-SQKLKIWENYVE----------------------------------------------- 746 (863)
Q Consensus 715 ~~~~~~~~~~~l~~aE~~Ak-~~r~GiW~~~~~----------------------------------------------- 746 (863)
|..+.......|..++..|+ ..+.++|.++..
T Consensus 597 ~~~e~~~~~~~~~s~~~~ak~~~k~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~i~p~~~F~~q~~~~~~~i~~~ 676 (875)
T KOG2039|consen 597 FAAERSSEYPPLESAELPAKLEQKLKIWLNYVEPVVEEVVLCLEKDERDLNTLKVVVTEITPGKGFYVQSISDGSKITKI 676 (875)
T ss_pred hhhhhhhhccchhhhhhccccchhcceeecccccchhhheecccccccccccceeeEeeecCCCcceeecccchHHHHHH
Confidence 76666666677889999999 889999988755
Q ss_pred -------------------------------------------cCC-CeEEEEEEeCCceeEEeCCCccCCCCCCCCCCC
Q 002945 747 -------------------------------------------SVN-DKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPP 782 (863)
Q Consensus 747 -------------------------------------------~~~-~~~~V~fIDyGn~e~V~~s~LR~L~~~~~~lPp 782 (863)
+.+ ..++|+||||||.+++|+.+|++||+.|..+|+
T Consensus 677 ~~~~~~~~~~~~~~~~~~~p~~gd~c~A~y~~D~qwyRa~i~~V~~~~~~~V~yiDygn~E~lp~~~l~~lp~~~~~~p~ 756 (875)
T KOG2039|consen 677 MTNLSQLVELKPPSSGSYTPKRGDLCVAKYSLDGQWYRALIVEVLDPESMEVFYIDYGNIETLPFVRLKPLPPHFSLLPP 756 (875)
T ss_pred HHHHHHHhhhcccccCCCCCCCCCeeeeeeccccceeeeeeeeeccCcceeEEEEecCcccccccccccCCChHHhcCch
Confidence 223 779999999999999999999999999999999
Q ss_pred ceEEeeeccccCCCCCCCcHHHHHHHHHHhcccCCCEEEEEEEEEcCCCCcccCCCCCceEEEEEEecCCCCchhHhhhc
Q 002945 783 LAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQ 862 (863)
Q Consensus 783 qA~~c~LA~vk~p~~~~~w~~eA~~~f~~~ll~~~k~l~a~V~~~~~~g~~~~~~~~~~~~~v~L~d~~~~~sIN~~Lv~ 862 (863)
+|++|.|++|++|. ++++.++|+.+|.+.. .++.+++++...- +++.++++|+...+..++++.|+.
T Consensus 757 ~a~~~~L~~ik~~~-~~~~~e~~i~~l~~~~--~~~~~~~~~~~~i----------~~~~~~~~l~~~~~~~d~~~~l~~ 823 (875)
T KOG2039|consen 757 VAQECGLAGIKEPQ-LEDLKEEAIRYLDEDT--LGHKCQVNVELRV----------VGNSLLVTLLYTVEELDVGEELVA 823 (875)
T ss_pred HHhhhhhhcccCCc-ccchHHHHHHHHHHHh--hcccceeeeeeee----------eccceeEEEeeecCcCChhHhhhh
Confidence 99999999999985 5789999999999984 5777777743222 367889999988778888888875
No 2
>KOG2039 consensus Transcriptional coactivator p100 [Transcription]
Probab=99.95 E-value=2.1e-27 Score=288.27 Aligned_cols=534 Identities=27% Similarity=0.355 Sum_probs=373.1
Q ss_pred CCceEEEEEeEecCCCEEEEeeCCCCCCCCCCeeEEEEEeccCCCCCC-----CCCCCChhHHHHHHHHHhhcCCCeEEE
Q 002945 8 GGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLAR-----RGGLDEPFAWDSREFLRKLCIGKEVTF 82 (863)
Q Consensus 8 ~~~~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~vrL~~IdaPe~~~-----~~~~~ep~a~eAre~Lr~lliGk~V~~ 82 (863)
....+.+.|..++++|++.+.... | .+.++.++.|..|+.+. +. ..-||+.+|++|||+.++|++|.+
T Consensus 317 ~~~~~~~~v~e~~~~d~~~~~~~s----g--~~~~~~~~~i~~pr~~~~~~~~~p-~~~~~q~~a~~~~~~~~i~~~v~~ 389 (875)
T KOG2039|consen 317 DDKGFSGKVVEVLVSDCVLVALDS----G--SENKLFLSSIRLPRAGEPGRSLKP-YISPVQLVAREFLRKKLIGKRVIL 389 (875)
T ss_pred ccccccceeeeeeccCceEEecCC----C--CceEEEeeeccCccccccccccCC-ccccHHHHhhhhhhhhccCceeeE
Confidence 445667789999999999999873 3 26789999999999221 22 358999999999999999999999
Q ss_pred EEceeccCCCc---EEEEEEeC-CccHHHHHHHcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHcCCCCcCCCCCCccc
Q 002945 83 RVDYAVPNIGR---EFGTVILG-DKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEA 158 (863)
Q Consensus 83 ~~~~~~~~~gR---~~g~V~~~-g~nv~~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~~~GiWs~~~~~~~~ 158 (863)
.+++.++.+.+ ..+.+++. |.|+++.++..|++.+.++..+....+..|+.|..+|+.|-..+.|+|+.+.....
T Consensus 390 ~~~~~~~~~~~~~~~~c~~~~~~~~~~a~~~~~kg~~~~v~~~~~~~~~s~~~d~ll~~E~~~~~~~~~~~s~~~~~~~- 468 (875)
T KOG2039|consen 390 QMDVIRPRRENVPTKVCALPLGGGKNVAELLVKKGLATVVRKRQDDEQRSSHYDLLLVAEAIAIKGKKGCHSKKLDPTL- 468 (875)
T ss_pred eeecccccccccccccccccCCCcceeeEEEecccchhhhhhHhhhhhhcchhhhhhcchHHHHhhhhhhcccCCCcce-
Confidence 99987764322 55666664 59999999999999998887554556778899999999999999999998865211
Q ss_pred ccccCCCCcCCCCchhhHHHHhhh-hcCCcccEEEEEeccCCEEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCccc
Q 002945 159 SIRNLPPSAIGDSSNFNAMALLDA-NKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTE 237 (863)
Q Consensus 159 ~~r~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~Ve~V~dG~t~rv~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~ 237 (863)
.++.+.-. ...+...|++. .++..+..+|+.+++|+.++++++.....+++.++|++||+..| +
T Consensus 469 ~~~~~~~~-----i~~n~~~~~~~~~~~~~~~~~v~~~~~gs~~~~~~pk~~~~~~~~~~g~~~~~~~r-~--------- 533 (875)
T KOG2039|consen 469 RITDLTVD-----IVRNKVQFLPSLDRGNRVEAIVEAVISGSRLRLYIPKETCYCQFALAGIDCPSGAR-N--------- 533 (875)
T ss_pred eechhhhh-----hhcCcEEeehhhccccceeeeeeeeeccccceeccCCcceeEEEeeccccCccccc-c---------
Confidence 12333221 12344456663 67889999999999999999999988999999999999999766 1
Q ss_pred ccCCCccccccccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHHccCceEEEEEeeecCCCCEEEEEEecCCCChh
Q 002945 238 ETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAK 317 (863)
Q Consensus 238 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep~g~eAk~f~~~~ll~r~V~v~~~~~Dkygr~la~V~~~~g~~~~ 317 (863)
+ ....+||+.+|..|+..+++++++.|.++.+|+.|++++..+...+.+
T Consensus 534 ---~--------------------------~~~~e~~~~~~~~~~~~~vl~~~~~l~v~~~~~~~~~l~~~~~~~~~~-- 582 (875)
T KOG2039|consen 534 ---D--------------------------VQEGEPFSEEAIEFTRSLVLQREVELEVEITDKNGNFLGSLYEDSKTN-- 582 (875)
T ss_pred ---c--------------------------ccccCCccHHHHHHhhhheeccceEEEEeeeccCcccccccccccccc--
Confidence 1 135799999999999999999999999999999999999998865665
Q ss_pred HHHHHHHhcCcEEEEecccccchHHHHHHHHHHHHHHH-HhcCccCcCCCCCCCCcccccccceeeEEEEEeeCcEEEEE
Q 002945 318 DLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAK-KTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVA 396 (863)
Q Consensus 318 di~~~LL~~GlA~v~~~~~~~~~~~~~~~l~~AE~~Ak-~~k~GiW~~~~~~~~~~~~~~~~~~~g~V~~V~sgd~i~I~ 396 (863)
+...++++||+.++ +.+.... ....|..+|..|+ +.+.++|.++.++...... .+..-+ .+
T Consensus 583 -~s~~~~e~~L~~~~-~~~e~~~--~~~~~~s~~~~ak~~~k~~~~~~~v~~~~~e~~-----------~~~~~~---~~ 644 (875)
T KOG2039|consen 583 -LSLKLLEQGLAPEH-FAAERSS--EYPPLESAELPAKLEQKLKIWLNYVEPVVEEVV-----------LCLEKD---ER 644 (875)
T ss_pred -chhhhhhhhcCccc-hhhhhhh--hccchhhhhhccccchhcceeecccccchhhhe-----------eccccc---cc
Confidence 99999999999998 4443322 2257899999999 9999999999887432210 001101 00
Q ss_pred cCCCCCCCCccceEEEeeeccCCCCCCCCCCCccchhhHHh-HHHHHhhccCcEEEEEEeeeecccccccccccCCCCCC
Q 002945 397 DDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREA-REFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPA 475 (863)
Q Consensus 397 ~~~~~~~~~~~e~~v~Lssi~~P~~~~~~~~~~~e~~~~ea-rEflR~~~iGk~V~v~vdy~~~~~~~~~~~~~~~~~~~ 475 (863)
. . ....+.++.|-.+... ....+..+.-++. -..|+..+. . ..+.
T Consensus 645 ~-~-------~~~~~~~~~i~p~~~F--~~q~~~~~~~i~~~~~~~~~~~~-~----------~~~~------------- 690 (875)
T KOG2039|consen 645 D-L-------NTLKVVVTEITPGKGF--YVQSISDGSKITKIMTNLSQLVE-L----------KPPS------------- 690 (875)
T ss_pred c-c-------ccceeeEeeecCCCcc--eeecccchHHHHHHHHHHHHHhh-h----------cccc-------------
Confidence 0 0 0123333333332111 0000111111110 111111110 0 0000
Q ss_pred CCCCCCCcccccccCCCCCCCccccccceeeeeeeEEecCCCCCCCCCchhhhccccCCCCCCcchhHHHHhcccceeee
Q 002945 476 GTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVIN 555 (863)
Q Consensus 476 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~nvae~lv~~G~a~v~~ 555 (863)
.| .| .+..|..+...
T Consensus 691 --~~---------------------------~~-------------------------~p~~gd~c~A~----------- 705 (875)
T KOG2039|consen 691 --SG---------------------------SY-------------------------TPKRGDLCVAK----------- 705 (875)
T ss_pred --cC---------------------------CC-------------------------CCCCCCeeeee-----------
Confidence 00 00 01122333222
Q ss_pred cCCcccccHHHHHHHHHHHHHHhcCCCcCCCCCCCceEEEeCCCCccccccccccccccCCccceEEEEEecCCEEEEEe
Q 002945 556 HRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLI 635 (863)
Q Consensus 556 ~r~~~~~s~~YraLv~ae~~A~~~~~Gi~s~k~~~~~~~~D~~~gn~~~ak~~l~~~~r~~~l~~~Ve~V~dG~~~~v~l 635 (863)
++.|++|||+++.. +-+. ....++|+|| ||.+. +|+. +++++++. |. .+
T Consensus 706 ---y~~D~qwyRa~i~~----------V~~~-~~~~V~yiDy--gn~E~----lp~~-~l~~lp~~---------~~-~~ 754 (875)
T KOG2039|consen 706 ---YSLDGQWYRALIVE----------VLDP-ESMEVFYIDY--GNIET----LPFV-RLKPLPPH---------FS-LL 754 (875)
T ss_pred ---eccccceeeeeeee----------eccC-cceeEEEEec--Ccccc----cccc-cccCCChH---------Hh-cC
Confidence 45679999999985 2221 2224589999 89886 9988 99999973 22 26
Q ss_pred cCCCceEEEEEeeecCCCCCchhHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEe--CCccHHHHHHH-cCCEEEe
Q 002945 636 PKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWE--SRTNVAVILLE-AGLAKLQ 712 (863)
Q Consensus 636 p~~~~~i~~~LaGI~~P~~~e~~~~EA~~~l~~~ll~r~V~v~v~~~D~~G~~~g~l~~--~~~ni~~~Lv~-~GlA~v~ 712 (863)
|.. ++.|+|+||..|. .+.+.++|..++.+..++..+.+.+...-....++++++. +..++++.|+. .|++...
T Consensus 755 p~~--a~~~~L~~ik~~~-~~~~~e~~i~~l~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~d~~~~l~~~~~l~~~~ 831 (875)
T KOG2039|consen 755 PPV--AQECGLAGIKEPQ-LEDLKEEAIRYLDEDTLGHKCQVNVELRVVGNSLLVTLLYTVEELDVGEELVAVEGLSLVE 831 (875)
T ss_pred chH--HhhhhhhcccCCc-ccchHHHHHHHHHHHhhcccceeeeeeeeeccceeEEEeeecCcCChhHhhhhhccccccc
Confidence 776 8889999999876 6789999999999999988777774432122345666654 57899999999 8998875
Q ss_pred eecCCCC-CCChHHHHHHHHHHHhccccccccccc
Q 002945 713 TSFGSDR-IPDSHLLEQAEKSAKSQKLKIWENYVE 746 (863)
Q Consensus 713 ~~~~~~~-~~~~~~l~~aE~~Ak~~r~GiW~~~~~ 746 (863)
.....+. ......|..+++.|+..+.++|...+.
T Consensus 832 ~~~~~~~~q~~~~~~~~~qq~a~~~~~~~~~y~~~ 866 (875)
T KOG2039|consen 832 QRKTEEVLQALLDQLEKAQQEARKEHLNIWFYGDV 866 (875)
T ss_pred ccccchHHHHHhhHhhhchhhHHhhhhhhhhhcCc
Confidence 3321110 112467899999999999999998765
No 3
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=99.92 E-value=3.5e-24 Score=208.31 Aligned_cols=131 Identities=39% Similarity=0.519 Sum_probs=113.5
Q ss_pred eEEEEEeEecCCCEEEEeeCCCCCCCCCCeeEEEEEeccCCCCCCCCCC----CChhHHHHHHHHHhhcCCCeEEEEEce
Q 002945 11 WYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGL----DEPFAWDSREFLRKLCIGKEVTFRVDY 86 (863)
Q Consensus 11 ~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~vrL~~IdaPe~~~~~~~----~ep~a~eAre~Lr~lliGk~V~~~~~~ 86 (863)
.+.|+|.+|+|||||.|..+. + ...+|||+||||||..+.+.. .+|||.+|++||+++|.|++|+|.++.
T Consensus 2 ~~~~~V~~V~DGDT~~v~~~~----~--~~~~vrL~gIdaPe~~~~~~~~~~~~~~~g~~A~~~l~~~l~g~~V~~~~~~ 75 (138)
T smart00318 2 EIRGVVERVLDGDTIRVRLPK----N--KLITIRLSGIDAPETARPNKGDGTTDEPFGEEAKEFLKKLLLGKKVQVEVDS 75 (138)
T ss_pred ceeEEEEEEecCCEEEEEeCC----C--CEEEEEEEeccCCccCCCCCCCccccCcHHHHHHHHHHHHhCCCEEEEEEec
Confidence 468999999999999999762 2 468999999999999865443 699999999999999999999999885
Q ss_pred eccCCCcEEEEEEe-CCccHHHHHHHcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHcCCCCcC
Q 002945 87 AVPNIGREFGTVIL-GDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWS 150 (863)
Q Consensus 87 ~~~~~gR~~g~V~~-~g~nv~~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~~~GiWs 150 (863)
.|+|||.+|+||+ ++.|||++||++|||+++..... .....+.+|..||++||++++|||+
T Consensus 76 -~D~~gr~~a~v~~~~~~~l~~~Lv~~G~A~~~~~~~~--~~~~~~~~l~~ae~~Ar~~~~GlW~ 137 (138)
T smart00318 76 -KDRYGRFLGTVYLNGGNNIAEELVKEGLAKVYRYADK--DEYRVYDELLEAEEAAKKARKGLWS 137 (138)
T ss_pred -cCCCCCEEEEEEECCCCcHHHHHHhcCCEEEEEecCc--cccHhHHHHHHHHHHHHHhCcCCCC
Confidence 7889999999999 57789999999999999887642 2122267899999999999999997
No 4
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=99.92 E-value=4.8e-24 Score=207.35 Aligned_cols=138 Identities=33% Similarity=0.579 Sum_probs=116.2
Q ss_pred CcccEEEEEeccCCEEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhhhcccC
Q 002945 186 RPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASA 265 (863)
Q Consensus 186 ~~~~~~Ve~V~dG~t~rv~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 265 (863)
++++|+|++|+|||||+|.+++ ++.++|||+||+||++.+... .
T Consensus 1 ~~~~~~V~~V~DGDT~~v~~~~-~~~~~vrL~gIdaPe~~~~~~-----------~------------------------ 44 (138)
T smart00318 1 KEIRGVVERVLDGDTIRVRLPK-NKLITIRLSGIDAPETARPNK-----------G------------------------ 44 (138)
T ss_pred CceeEEEEEEecCCEEEEEeCC-CCEEEEEEEeccCCccCCCCC-----------C------------------------
Confidence 3578999999999999998764 367899999999999876320 0
Q ss_pred CCCCCCchhHHHHHHHHHHHccCceEEEEEeeecCCCCEEEEEEecCCCChhHHHHHHHhcCcEEEEecccccchHHHHH
Q 002945 266 GQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKR 345 (863)
Q Consensus 266 ~~~~~~ep~g~eAk~f~~~~ll~r~V~v~~~~~Dkygr~la~V~~~~g~~~~di~~~LL~~GlA~v~~~~~~~~~~~~~~ 345 (863)
...+.+|||.+|++|++++|++++|++.+.+.|+|||++|+|++.+|.+ |+++||++|||+++........... .
T Consensus 45 -~~~~~~~~g~~A~~~l~~~l~g~~V~~~~~~~D~~gr~~a~v~~~~~~~---l~~~Lv~~G~A~~~~~~~~~~~~~~-~ 119 (138)
T smart00318 45 -DGTTDEPFGEEAKEFLKKLLLGKKVQVEVDSKDRYGRFLGTVYLNGGNN---IAEELVKEGLAKVYRYADKDEYRVY-D 119 (138)
T ss_pred -CccccCcHHHHHHHHHHHHhCCCEEEEEEeccCCCCCEEEEEEECCCCc---HHHHHHhcCCEEEEEecCccccHhH-H
Confidence 0123689999999999999999999999999999999999999987764 9999999999999976655432222 5
Q ss_pred HHHHHHHHHHHhcCccCcC
Q 002945 346 RLKAADLQAKKTRLRMWTN 364 (863)
Q Consensus 346 ~l~~AE~~Ak~~k~GiW~~ 364 (863)
.|.+||++||++++|||++
T Consensus 120 ~l~~ae~~Ar~~~~GlW~~ 138 (138)
T smart00318 120 ELLEAEEAAKKARKGLWSD 138 (138)
T ss_pred HHHHHHHHHHHhCcCCCCC
Confidence 8999999999999999973
No 5
>PRK06518 hypothetical protein; Provisional
Probab=99.91 E-value=1.1e-23 Score=211.07 Aligned_cols=138 Identities=20% Similarity=0.236 Sum_probs=115.2
Q ss_pred CCCCCceEEEEEeEecCCCEEEEeeCCCCCCCCCCeeEEEEEeccCCCCCCC---CCCCChhHHHHHHHHHhhcCCCeEE
Q 002945 5 AAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARR---GGLDEPFAWDSREFLRKLCIGKEVT 81 (863)
Q Consensus 5 a~~~~~~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~vrL~~IdaPe~~~~---~~~~ep~a~eAre~Lr~lliGk~V~ 81 (863)
|......+.|+| +|+|||||.|.... ......++|||+||||||.... ++..+|||.+|+++|+.++.|+.|+
T Consensus 17 ~~~~~~~~~G~v-~V~DGDTl~l~~~~---~~~~~~~~VRL~GIDAPE~~Q~c~~~~~~wp~G~~A~~~L~~li~gk~V~ 92 (177)
T PRK06518 17 ASNNVVIFHGRA-QVTSGVTFKLIADG---WRKEITRDIRLYGVDTCAPRQKARLGDQEWPCGAVATAWLVTKTLNKWLS 92 (177)
T ss_pred cccccccccceE-EEEcCCEEEEeecc---ccCCCCeEEEEEEEcCCCCCCcccCCCCCCcHHHHHHHHHHHHHCCCeEE
Confidence 556777788998 79999999997431 0011247899999999998764 3467899999999999999999999
Q ss_pred EEEceeccCCCcEEEEEEeCCccHHHHHHHcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHcCCCCcCCC
Q 002945 82 FRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKV 152 (863)
Q Consensus 82 ~~~~~~~~~~gR~~g~V~~~g~nv~~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~~~GiWs~~ 152 (863)
+... .|+|||.+|+||++|.|||++||++|||++|..+.+ ..+...|..+|++||++++|||+.+
T Consensus 93 ~~~~--~D~ygR~lA~~~~~g~dln~~mV~~G~A~ay~~~~~----~~~~~~y~~aE~~AR~~k~GLW~~~ 157 (177)
T PRK06518 93 CRQA--RMENGVHYAQCFVDGVDIAALGLAEGMAVLSKDDHE----DPGPAQYASLEEKARKAYRGLWSST 157 (177)
T ss_pred EEEe--cccCCCEEEEEEECCEEHHHHHHhCCCEEEEeeccC----CCCHHHHHHHHHHHHHhCCCCCCCC
Confidence 9965 388999999999999999999999999999987641 2334579999999999999999964
No 6
>cd00175 SNc Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
Probab=99.91 E-value=2.2e-23 Score=200.23 Aligned_cols=123 Identities=40% Similarity=0.560 Sum_probs=109.6
Q ss_pred EecCCCEEEEeeCCCCCCCCCCeeEEEEEeccCCCCCCC----CCCCChhHHHHHHHHHhhcCCCeEEEEEceeccCCCc
Q 002945 18 AVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARR----GGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGR 93 (863)
Q Consensus 18 ~V~dGDTi~v~~~~~~~~g~~~~~~vrL~~IdaPe~~~~----~~~~ep~a~eAre~Lr~lliGk~V~~~~~~~~~~~gR 93 (863)
+|+|||||.|.... + ...+|||+||||||+.+. ....+|||.+|++||+++|.|++|+|.++. .|+|||
T Consensus 1 rV~dGDt~~v~~~~----~--~~~~vrL~gId~Pe~~~~~~~~~~~~~~~g~~A~~~l~~~l~~~~V~i~~~~-~d~~gr 73 (129)
T cd00175 1 RVIDGDTIRVRLPP----G--PLITVRLSGIDAPETARPNKGKSETDEPFGEEAKEFLKKLLLGKKVQVEVDS-KDRYGR 73 (129)
T ss_pred CeecCcEEEEEeCC----C--CEEEEEEEeecCccccCCccCCCCCCCchHHHHHHHHHHHhCCCEEEEEEcc-CCCCCC
Confidence 58999999999862 2 468999999999999865 356899999999999999999999999885 788999
Q ss_pred EEEEEEeCC-ccHHHHHHHcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHcCCCCcC
Q 002945 94 EFGTVILGD-KNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWS 150 (863)
Q Consensus 94 ~~g~V~~~g-~nv~~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~~~GiWs 150 (863)
.+|+||+++ .|||++||++|||+++..+. ..+.+..+|..||++||++++|||+
T Consensus 74 ~la~v~~~~~~~v~~~Lv~~G~A~~~~~~~---~~~~~~~~l~~ae~~Ak~~k~GiW~ 128 (129)
T cd00175 74 TLGTVYLNGGENIAEELVKEGLARVYRYYP---DDSEYYDELLEAEEAAKKARKGLWS 128 (129)
T ss_pred EEEEEEeCCCCcHHHHHHhcCCEEEEEECC---CCcHHHHHHHHHHHHHHHhCcCCCC
Confidence 999999977 99999999999999998874 2246789999999999999999997
No 7
>cd00175 SNc Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
Probab=99.90 E-value=4.8e-23 Score=197.93 Aligned_cols=129 Identities=34% Similarity=0.600 Sum_probs=109.3
Q ss_pred EeccCCEEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhhhcccCCCCCCCch
Q 002945 194 QARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEP 273 (863)
Q Consensus 194 ~V~dG~t~rv~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep 273 (863)
+|+|||||+|...+. +.++|||+||+||++..... + ...+.+|
T Consensus 1 rV~dGDt~~v~~~~~-~~~~vrL~gId~Pe~~~~~~-----------~-------------------------~~~~~~~ 43 (129)
T cd00175 1 RVIDGDTIRVRLPPG-PLITVRLSGIDAPETARPNK-----------G-------------------------KSETDEP 43 (129)
T ss_pred CeecCcEEEEEeCCC-CEEEEEEEeecCccccCCcc-----------C-------------------------CCCCCCc
Confidence 589999999997644 67899999999999876320 0 1245899
Q ss_pred hHHHHHHHHHHHccCceEEEEEeeecCCCCEEEEEEecCCCChhHHHHHHHhcCcEEEEecccccchHHHHHHHHHHHHH
Q 002945 274 FALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQ 353 (863)
Q Consensus 274 ~g~eAk~f~~~~ll~r~V~v~~~~~Dkygr~la~V~~~~g~~~~di~~~LL~~GlA~v~~~~~~~~~~~~~~~l~~AE~~ 353 (863)
||.+|++|++++|++++|+|.+.+.|+|||++|+|++.++. ||+++||++|||+++....... .....|.+||++
T Consensus 44 ~g~~A~~~l~~~l~~~~V~i~~~~~d~~gr~la~v~~~~~~---~v~~~Lv~~G~A~~~~~~~~~~--~~~~~l~~ae~~ 118 (129)
T cd00175 44 FGEEAKEFLKKLLLGKKVQVEVDSKDRYGRTLGTVYLNGGE---NIAEELVKEGLARVYRYYPDDS--EYYDELLEAEEA 118 (129)
T ss_pred hHHHHHHHHHHHhCCCEEEEEEccCCCCCCEEEEEEeCCCC---cHHHHHHhcCCEEEEEECCCCc--HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997645 4999999999999998665431 233699999999
Q ss_pred HHHhcCccCcC
Q 002945 354 AKKTRLRMWTN 364 (863)
Q Consensus 354 Ak~~k~GiW~~ 364 (863)
||++|+|||++
T Consensus 119 Ak~~k~GiW~~ 129 (129)
T cd00175 119 AKKARKGLWSD 129 (129)
T ss_pred HHHhCcCCCCC
Confidence 99999999974
No 8
>PRK06518 hypothetical protein; Provisional
Probab=99.83 E-value=8.5e-20 Score=183.10 Aligned_cols=136 Identities=15% Similarity=0.138 Sum_probs=109.4
Q ss_pred hcCCcccEEEEEeccCCEEEEEEcC--CceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhh
Q 002945 183 NKGRPMQGIVEQARDGSTLRVYLLP--EFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAA 260 (863)
Q Consensus 183 ~~~~~~~~~Ve~V~dG~t~rv~~~~--~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 260 (863)
.....+.|.| .|+|||||++.... .+...+|||+|||+||...... .
T Consensus 19 ~~~~~~~G~v-~V~DGDTl~l~~~~~~~~~~~~VRL~GIDAPE~~Q~c~---------~--------------------- 67 (177)
T PRK06518 19 NNVVIFHGRA-QVTSGVTFKLIADGWRKEITRDIRLYGVDTCAPRQKAR---------L--------------------- 67 (177)
T ss_pred cccccccceE-EEEcCCEEEEeeccccCCCCeEEEEEEEcCCCCCCccc---------C---------------------
Confidence 4567778999 79999999996321 1235689999999999764210 0
Q ss_pred hcccCCCCCCCchhHHHHHHHHHHHccCceEEEEEeeecCCCCEEEEEEecCCCChhHHHHHHHhcCcEEEEecccccch
Q 002945 261 STASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMME 340 (863)
Q Consensus 261 ~~~~~~~~~~~ep~g~eAk~f~~~~ll~r~V~v~~~~~Dkygr~la~V~~~~g~~~~di~~~LL~~GlA~v~~~~~~~~~ 340 (863)
..+.+|||.+|+.||..++.++.|++...+ |+|||++|++++ +|. ||+++||++|||+++....+...
T Consensus 68 -------~~~~wp~G~~A~~~L~~li~gk~V~~~~~~-D~ygR~lA~~~~-~g~---dln~~mV~~G~A~ay~~~~~~~~ 135 (177)
T PRK06518 68 -------GDQEWPCGAVATAWLVTKTLNKWLSCRQAR-MENGVHYAQCFV-DGV---DIAALGLAEGMAVLSKDDHEDPG 135 (177)
T ss_pred -------CCCCCcHHHHHHHHHHHHHCCCeEEEEEec-ccCCCEEEEEEE-CCE---EHHHHHHhCCCEEEEeeccCCCC
Confidence 135899999999999999999999999877 999999999998 444 59999999999999865433221
Q ss_pred HHHHHHHHHHHHHHHHhcCccCcC
Q 002945 341 EDAKRRLKAADLQAKKTRLRMWTN 364 (863)
Q Consensus 341 ~~~~~~l~~AE~~Ak~~k~GiW~~ 364 (863)
...|..+|++||++|+|||+.
T Consensus 136 ---~~~y~~aE~~AR~~k~GLW~~ 156 (177)
T PRK06518 136 ---PAQYASLEEKARKAYRGLWSS 156 (177)
T ss_pred ---HHHHHHHHHHHHHhCCCCCCC
Confidence 147999999999999999985
No 9
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]
Probab=99.82 E-value=1.8e-19 Score=185.13 Aligned_cols=127 Identities=30% Similarity=0.465 Sum_probs=111.9
Q ss_pred EEEEeEecCCCEEEEeeCCCCCCCCCCeeEEEEEeccCCCCCCC--CCCCChhHHHHHHHHHhhcCC-CeEEEEEceecc
Q 002945 13 RARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARR--GGLDEPFAWDSREFLRKLCIG-KEVTFRVDYAVP 89 (863)
Q Consensus 13 ~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~vrL~~IdaPe~~~~--~~~~ep~a~eAre~Lr~lliG-k~V~~~~~~~~~ 89 (863)
.+.|.+|+|||||.+.... + +..+|||.||||||..+. ++..+|||.+|++||++++.+ +.|.|......|
T Consensus 43 ~~~v~~v~dGDT~~v~~~~----~--~~~~iRl~gIdaPe~~~~~~~~~~~~~G~~A~~~l~~~l~~~~~v~~~~~~~~d 116 (192)
T COG1525 43 DSTVVRVIDGDTLKVRGEG----G--QAVKIRLAGIDAPETKQTCAGGKSQPCGEEAREFLRNLLLGRRTVECDLADRKD 116 (192)
T ss_pred CCceEEecCCCeEEEecCC----C--ceeEEEEeccCCCcccccCCcccccchHHHHHHHHHHHhcCCceEEEecCCccc
Confidence 4799999999999999872 2 468999999999999875 457899999999999999997 888887653268
Q ss_pred CCCcEEEEEEeCCccHHHHHHHcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHcCCCCcCCC
Q 002945 90 NIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKV 152 (863)
Q Consensus 90 ~~gR~~g~V~~~g~nv~~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~~~GiWs~~ 152 (863)
+|+|.+|.||.+|.|||++||++|||+++. + ..+...|.++|+.||.+++|||+..
T Consensus 117 ~y~R~la~v~~~~~~v~~~lV~~G~A~~~~--~-----~~~~~~~~~ae~~Ar~~~~GiW~~~ 172 (192)
T COG1525 117 RYGRLLAYVTVDGTDVNLELVKEGLARVYY--N-----SEYGGEYAEAEEEARKRRLGIWSDD 172 (192)
T ss_pred CCCcEEEEEEECCEEHHHHHHhCCCEEEec--c-----ccchHHHHHHHHHHHHcccCccCCC
Confidence 999999999999999999999999999998 1 2356789999999999999999986
No 10
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes. Staphylococcal nuclease has multidomain organisation []. The human cellular coactivator p100 contains four repeats, each of which is a SNase homologue. These repeats are unlikely to possess SNase-like activities as each lacks equivalent SNase catalytic residues, yet they may mediate p100's single-stranded DNA-binding function []. alA variety of proteins including many that are still uncharacterised belong to this group.; GO: 0003676 nucleic acid binding, 0016788 hydrolase activity, acting on ester bonds; PDB: 2PZT_A 2KQ3_A 2PZU_A 2PW5_A 2KHS_B 3QON_A 3QOJ_A 2OXP_A 3QOL_A 2PYK_A ....
Probab=99.81 E-value=9.4e-20 Score=169.11 Aligned_cols=107 Identities=29% Similarity=0.497 Sum_probs=94.7
Q ss_pred EEEEEeccCCCCCCCCCCCChhHHHHHHHHHhhcCCCeEEEEEcee-ccCCCcEEEEEEeCCccHHHHHHHcCCEEEEEc
Q 002945 42 TLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYA-VPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQ 120 (863)
Q Consensus 42 ~vrL~~IdaPe~~~~~~~~ep~a~eAre~Lr~lliGk~V~~~~~~~-~~~~gR~~g~V~~~g~nv~~~Lv~~G~A~v~~~ 120 (863)
+|||+|||||+..+.+...+|||.+|++||++++.|+.|.+.++.. .|.+||.+|+|++++.+||++||++|||+++..
T Consensus 1 ~vrL~gI~~Pe~~~~~~~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~d~~gr~~~~v~~~~~~in~~Ll~~GlA~v~~~ 80 (108)
T PF00565_consen 1 KVRLAGIDAPETNQPDKPEEPYGQEAKEFLRELLLGRQVVVEVDDIKQDKYGRLLAYVYVDGEDINEELLEEGLARVYRR 80 (108)
T ss_dssp EEEETTEE-SSSTCCCTTTSTTHHHHHHHHHHHHHTCSCEEEEEESSBSTTSCEEEEEEETTEEHHHHHHHTTSSEE-CG
T ss_pred CEEEEEEECCCCCCCCCccchHHHHHHHHHHHHhCCCeeeecccccCCCCCCceeEEEEEechhhhHHHHhCCeEEEEEe
Confidence 6999999999999877789999999999999999999999998764 588999999999999999999999999999886
Q ss_pred cCcCCCCchhHHHHHHHHHHHHHcCCCCcCC
Q 002945 121 GSQKGEASPFLAELLRLEEQAKLQGLGRWSK 151 (863)
Q Consensus 121 ~~~~~~~~~~~~~l~~aE~~Ak~~~~GiWs~ 151 (863)
.. ....++..|..||++||++++|||+.
T Consensus 81 ~~---~~~~~~~~~~~ae~~A~~~k~GiW~~ 108 (108)
T PF00565_consen 81 YP---SNSEYYASLLQAEEEARKAKKGIWSE 108 (108)
T ss_dssp BT---TBCTTHHHHHHHHHHHHHTT-GGGCT
T ss_pred cC---CCcHHHHHHHHHHHHHHHhCcCCCCC
Confidence 53 23567899999999999999999984
No 11
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes. Staphylococcal nuclease has multidomain organisation []. The human cellular coactivator p100 contains four repeats, each of which is a SNase homologue. These repeats are unlikely to possess SNase-like activities as each lacks equivalent SNase catalytic residues, yet they may mediate p100's single-stranded DNA-binding function []. alA variety of proteins including many that are still uncharacterised belong to this group.; GO: 0003676 nucleic acid binding, 0016788 hydrolase activity, acting on ester bonds; PDB: 2PZT_A 2KQ3_A 2PZU_A 2PW5_A 2KHS_B 3QON_A 3QOJ_A 2OXP_A 3QOL_A 2PYK_A ....
Probab=99.77 E-value=1.7e-18 Score=160.66 Aligned_cols=106 Identities=31% Similarity=0.538 Sum_probs=87.6
Q ss_pred EEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHHccCceEE
Q 002945 213 QVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVR 292 (863)
Q Consensus 213 ~v~l~Gi~~P~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep~g~eAk~f~~~~ll~r~V~ 292 (863)
+|||+||+||++.+. ....+|||.+|++|++++|++++|.
T Consensus 1 ~vrL~gI~~Pe~~~~----------------------------------------~~~~~~~~~~A~~~l~~~l~~~~~~ 40 (108)
T PF00565_consen 1 KVRLAGIDAPETNQP----------------------------------------DKPEEPYGQEAKEFLRELLLGRQVV 40 (108)
T ss_dssp EEEETTEE-SSSTCC----------------------------------------CTTTSTTHHHHHHHHHHHHHTCSCE
T ss_pred CEEEEEEECCCCCCC----------------------------------------CCccchHHHHHHHHHHHHhCCCeee
Confidence 689999999998753 2358999999999999999999999
Q ss_pred EEEeee--cCCCCEEEEEEecCCCChhHHHHHHHhcCcEEEEecccccchHHHHHHHHHHHHHHHHhcCccCcC
Q 002945 293 IVLEGV--DKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTN 364 (863)
Q Consensus 293 v~~~~~--Dkygr~la~V~~~~g~~~~di~~~LL~~GlA~v~~~~~~~~~~~~~~~l~~AE~~Ak~~k~GiW~~ 364 (863)
+.+.+. |+|||++|+|+++ +. ||+++||++|||+++........ ....|..||++||++|+|||++
T Consensus 41 ~~~~~~~~d~~gr~~~~v~~~-~~---~in~~Ll~~GlA~v~~~~~~~~~--~~~~~~~ae~~A~~~k~GiW~~ 108 (108)
T PF00565_consen 41 VEVDDIKQDKYGRLLAYVYVD-GE---DINEELLEEGLARVYRRYPSNSE--YYASLLQAEEEARKAKKGIWSE 108 (108)
T ss_dssp EEEEESSBSTTSCEEEEEEET-TE---EHHHHHHHTTSSEE-CGBTTBCT--THHHHHHHHHHHHHTT-GGGCT
T ss_pred ecccccCCCCCCceeEEEEEe-ch---hhhHHHHhCCeEEEEEecCCCcH--HHHHHHHHHHHHHHhCcCCCCC
Confidence 999876 9999999999997 44 49999999999999874332222 2269999999999999999985
No 12
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]
Probab=99.73 E-value=3e-17 Score=168.81 Aligned_cols=129 Identities=31% Similarity=0.420 Sum_probs=109.1
Q ss_pred ccEEEEEeccCCEEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhhhcccCCC
Q 002945 188 MQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQ 267 (863)
Q Consensus 188 ~~~~Ve~V~dG~t~rv~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (863)
..+.|.+|.|||||++.... .+.++|||+|||+||..... .
T Consensus 42 ~~~~v~~v~dGDT~~v~~~~-~~~~~iRl~gIdaPe~~~~~-----------~--------------------------- 82 (192)
T COG1525 42 PDSTVVRVIDGDTLKVRGEG-GQAVKIRLAGIDAPETKQTC-----------A--------------------------- 82 (192)
T ss_pred CCCceEEecCCCeEEEecCC-CceeEEEEeccCCCcccccC-----------C---------------------------
Confidence 56899999999999998653 56789999999999987521 0
Q ss_pred CCCCchhHHHHHHHHHHHccC-ceEEEEEee-ecCCCCEEEEEEecCCCChhHHHHHHHhcCcEEEEecccccchHHHHH
Q 002945 268 QSTDEPFALDAKYFTEMRVLN-REVRIVLEG-VDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKR 345 (863)
Q Consensus 268 ~~~~ep~g~eAk~f~~~~ll~-r~V~v~~~~-~Dkygr~la~V~~~~g~~~~di~~~LL~~GlA~v~~~~~~~~~~~~~~ 345 (863)
....+|||.+|++|++++|.+ +.|++.+.. .|+|||++|+++ .+|. |++.+||++|||+++. +. . ...
T Consensus 83 ~~~~~~~G~~A~~~l~~~l~~~~~v~~~~~~~~d~y~R~la~v~-~~~~---~v~~~lV~~G~A~~~~---~~-~--~~~ 152 (192)
T COG1525 83 GGKSQPCGEEAREFLRNLLLGRRTVECDLADRKDRYGRLLAYVT-VDGT---DVNLELVKEGLARVYY---NS-E--YGG 152 (192)
T ss_pred cccccchHHHHHHHHHHHhcCCceEEEecCCcccCCCcEEEEEE-ECCE---EHHHHHHhCCCEEEec---cc-c--chH
Confidence 235799999999999999996 888888888 999999999999 4555 4999999999999987 11 1 125
Q ss_pred HHHHHHHHHHHhcCccCcCC
Q 002945 346 RLKAADLQAKKTRLRMWTNY 365 (863)
Q Consensus 346 ~l~~AE~~Ak~~k~GiW~~~ 365 (863)
.|..||+.||++++|||+..
T Consensus 153 ~~~~ae~~Ar~~~~GiW~~~ 172 (192)
T COG1525 153 EYAEAEEEARKRRLGIWSDD 172 (192)
T ss_pred HHHHHHHHHHHcccCccCCC
Confidence 89999999999999999985
No 13
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=98.30 E-value=2.9e-07 Score=86.16 Aligned_cols=54 Identities=41% Similarity=0.661 Sum_probs=44.7
Q ss_pred ccccccccc---cCCCeEEEEEEeCCceeEEeCCCccCCCCCCCCCCCceEEeeecc
Q 002945 738 LKIWENYVE---SVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAY 791 (863)
Q Consensus 738 ~GiW~~~~~---~~~~~~~V~fIDyGn~e~V~~s~LR~L~~~~~~lPpqA~~c~LA~ 791 (863)
.|.|..... ..++.+.|+|||||+++.|+.++||+||+.|..+|+||++|.|+|
T Consensus 65 ~~~w~Ra~I~~~~~~~~~~V~~iD~G~~~~v~~~~l~~l~~~~~~~P~~a~~~~L~g 121 (121)
T PF00567_consen 65 DGRWYRAVITVDIDENQYKVFLIDYGNTEKVSASDLRPLPPEFASLPPQAIKCKLAG 121 (121)
T ss_dssp TSEEEEEEEEEEECTTEEEEEETTTTEEEEEEGGGEEE--HHHCSSSSSCEEEEET-
T ss_pred CCceeeEEEEEecccceeEEEEEecCceEEEcHHHhhhhCHHHhhCChhhEEEEEcC
Confidence 356665533 467889999999999999999999999999999999999999986
No 14
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=96.53 E-value=0.0017 Score=53.09 Aligned_cols=40 Identities=40% Similarity=0.684 Sum_probs=31.6
Q ss_pred ccccccccc--cCC-CeEEEEEEeCCceeEEeCCCccCCCCCC
Q 002945 738 LKIWENYVE--SVN-DKFEVFYIDYGNQELVPYNKLRPIDPSL 777 (863)
Q Consensus 738 ~GiW~~~~~--~~~-~~~~V~fIDyGn~e~V~~s~LR~L~~~~ 777 (863)
.|.|-.... ..+ ..+.|+|+||||.+.|+.++||+||+.+
T Consensus 15 d~~wyra~I~~~~~~~~~~V~f~D~G~~~~v~~~~l~~l~~~~ 57 (57)
T smart00333 15 DGEWYRARIIKVDGEQLYEVFFIDYGNEEVVPPSDLRPLPEEL 57 (57)
T ss_pred CCCEEEEEEEEECCCCEEEEEEECCCccEEEeHHHeecCCCCC
Confidence 455655544 222 7899999999999999999999998753
No 15
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=95.75 E-value=0.0057 Score=48.06 Aligned_cols=34 Identities=44% Similarity=0.820 Sum_probs=26.3
Q ss_pred cccccccc---cCCCeEEEEEEeCCceeEEeCCCccC
Q 002945 739 KIWENYVE---SVNDKFEVFYIDYGNQELVPYNKLRP 772 (863)
Q Consensus 739 GiW~~~~~---~~~~~~~V~fIDyGn~e~V~~s~LR~ 772 (863)
|.|-.... ..+..+.|+|+||||.+.|+.++||+
T Consensus 12 ~~wyra~V~~~~~~~~~~V~f~DyG~~~~v~~~~l~~ 48 (48)
T cd04508 12 GKWYRAKITSILSDGKVEVFFVDYGNTEVVPLSDLRP 48 (48)
T ss_pred CeEEEEEEEEECCCCcEEEEEEcCCCcEEEeHHHcCC
Confidence 44544433 23678999999999999999999885
No 16
>KOG2279 consensus Kinase anchor protein AKAP149, contains KH and Tudor RNA-binding domains [Signal transduction mechanisms]
Probab=94.69 E-value=0.0085 Score=68.66 Aligned_cols=62 Identities=23% Similarity=0.251 Sum_probs=58.6
Q ss_pred EEEEEEeCCceeEEeCCCccCCCCCCCCCCCceEEeeeccccCCCCCCCcHHHHHHHHHHhcc
Q 002945 752 FEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTY 814 (863)
Q Consensus 752 ~~V~fIDyGn~e~V~~s~LR~L~~~~~~lPpqA~~c~LA~vk~p~~~~~w~~eA~~~f~~~ll 814 (863)
+.+.||||| ...+..++||+++..|.++|+|+-+..|+.+.|......|+.+|...|+.++|
T Consensus 488 I~~~~VdyG-Y~~~~~ddlrqiRsd~~slPfq~tEv~l~~v~pl~~t~~~Spea~h~~s~Msi 549 (608)
T KOG2279|consen 488 IGLELVDYG-YAIELPDDLRQIRSDPDSLPFQATEVDLSLVTPLTETKKSSPEATHTLSCMSI 549 (608)
T ss_pred hhheeeccc-ccccchhhhhhhhcccccCCcccchhhHhheeccCCCcCcCcccccchhhhhh
Confidence 899999999 99999999999999999999999999999999987778899999999999954
No 17
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=86.16 E-value=0.51 Score=39.05 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=25.4
Q ss_pred CCeEEEEEEe--CCceeEEeCCCccCCCCC
Q 002945 749 NDKFEVFYID--YGNQELVPYNKLRPIDPS 776 (863)
Q Consensus 749 ~~~~~V~fID--yGn~e~V~~s~LR~L~~~ 776 (863)
.+.+.|+|+| +|+.++++.++|||+|+.
T Consensus 30 ~~~~~V~~~~~~~~~~e~v~~~~LRp~~~w 59 (61)
T smart00743 30 DGKYLVRYLTESEPLKETVDWSDLRPHPPW 59 (61)
T ss_pred CCEEEEEECCCCcccEEEEeHHHcccCCCC
Confidence 4679999999 999999999999999864
No 18
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=58.31 E-value=6.6 Score=42.72 Aligned_cols=28 Identities=29% Similarity=0.554 Sum_probs=24.3
Q ss_pred CCeEEEEEEeCCceeEEeCCCccCCCCC
Q 002945 749 NDKFEVFYIDYGNQELVPYNKLRPIDPS 776 (863)
Q Consensus 749 ~~~~~V~fIDyGn~e~V~~s~LR~L~~~ 776 (863)
...+.|.|.+|||.|.|.+++|++....
T Consensus 97 ~~~~~V~f~gYgn~e~v~l~dL~~~~~~ 124 (264)
T PF06003_consen 97 DGTCVVVFTGYGNEEEVNLSDLKPSEGD 124 (264)
T ss_dssp TTEEEEEETTTTEEEEEEGGGEEETT--
T ss_pred CCEEEEEEcccCCeEeeehhhhcccccc
Confidence 4689999999999999999999998765
No 19
>KOG2279 consensus Kinase anchor protein AKAP149, contains KH and Tudor RNA-binding domains [Signal transduction mechanisms]
Probab=35.22 E-value=27 Score=41.08 Aligned_cols=99 Identities=16% Similarity=0.185 Sum_probs=69.2
Q ss_pred CeEEEEEEeCCceeEEeCCCccCCCCCCCCCCCceEEeeeccccCCCCCCCcHHHHHHHHHHhccc-CCCEEEEEEEEEc
Q 002945 750 DKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYN-SSNEFRALVEERD 828 (863)
Q Consensus 750 ~~~~V~fIDyGn~e~V~~s~LR~L~~~~~~lPpqA~~c~LA~vk~p~~~~~w~~eA~~~f~~~ll~-~~k~l~a~V~~~~ 828 (863)
-..+..++||+....+.+..++.|...+..+|.+++.|.+| ++. -+.|+..+... ...+. .-++|.+.+..--
T Consensus 392 L~td~~wL~fpd~i~cev~V~s~i~a~hlf~pq~tip~F~a---Lrs-ldqwm~l~y~e--q~t~pelP~P~~~t~~sAA 465 (608)
T KOG2279|consen 392 LNTDLYWLDFPDNIDCEVKVLSAIRADHLFLPQQTIPCFLA---LRS-LDQWMELAYDE--QLTHPELPKPLVATISSAA 465 (608)
T ss_pred cCCcceEEEcCCCceEEeeeehhhcccceeeccccchhhhh---hhh-HHHHHHHHhhc--ccCCcCCCcchhhceeeec
Confidence 34577899999999999999999999999999999999999 332 25798777653 22111 1266677775433
Q ss_pred CCCCcccCCCCCceEEEEEEecCC--CCchhHhhh
Q 002945 829 SSGGKLKGQGTGTLLHVTLVAVDA--EISINTLMV 861 (863)
Q Consensus 829 ~~g~~~~~~~~~~~~~v~L~d~~~--~~sIN~~Lv 861 (863)
.-|. +.+..++|+++.+ +.+|.-.||
T Consensus 466 p~g~-------~awpra~lvd~~det~l~I~~~~V 493 (608)
T KOG2279|consen 466 PTGI-------SAWPRAYLVDTSDETKLDIGLELV 493 (608)
T ss_pred ccCC-------CCccceEEEeccCcccchhhheee
Confidence 2221 3688899998854 445655554
No 20
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=34.74 E-value=53 Score=34.15 Aligned_cols=65 Identities=23% Similarity=0.403 Sum_probs=43.8
Q ss_pred EEEEeeCCCCCCCCCC---eeEEEEEeccCCCCCCCCCCCChh-HHHHHHHHHhhcCC----CeEEEEEceeccCCCcEE
Q 002945 24 SLVITALSNPNPGPPR---EKTLTLSSIITPRLARRGGLDEPF-AWDSREFLRKLCIG----KEVTFRVDYAVPNIGREF 95 (863)
Q Consensus 24 Ti~v~~~~~~~~g~~~---~~~vrL~~IdaPe~~~~~~~~ep~-a~eAre~Lr~lliG----k~V~~~~~~~~~~~gR~~ 95 (863)
++++++. .||-+ .-+.|+.||..|-+-...++.--| ||.||.|+.+++.. ..|.+.+. +++||.-
T Consensus 64 ~av~Kd~----~gPlQyLLmPt~rItGiEsP~L~e~atpNyf~~AWqAR~fms~kyg~~ipd~dvsLaIN---s~~gRtQ 136 (252)
T COG2134 64 YAVLKDR----NGPLQYLLMPTARITGIESPLLLEPATPNYFYLAWQARDFMSKKYGNPIPDSDVSLAIN---SKNGRTQ 136 (252)
T ss_pred eEEEecc----CCCceeEeeeeecccCCcChhhcCCCCccHHHHHHHHHHHHHHHhCCCCCccceEEEec---CccCccc
Confidence 4556655 25422 237899999999987654444433 99999999999843 56776665 3456653
No 21
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=27.48 E-value=11 Score=34.40 Aligned_cols=58 Identities=19% Similarity=0.397 Sum_probs=35.6
Q ss_pred cccHHHHHHHHHHHHHHhcCCCcCCCCCCCceEEEeCCCCccccccccccccccCCccceEEEEEecCCEEEEEecCCCc
Q 002945 561 ERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETC 640 (863)
Q Consensus 561 ~~s~~YraLv~ae~~A~~~~~Gi~s~k~~~~~~~~D~~~gn~~~ak~~l~~~~r~~~l~~~Ve~V~dG~~~~v~lp~~~~ 640 (863)
.++.|||+.|.. ....+.. .+.++|| |+++. ++.. ++++|+. .|. .+|.+
T Consensus 64 ~~~~w~Ra~I~~----------~~~~~~~-~V~~iD~--G~~~~----v~~~-~l~~l~~---------~~~-~~P~~-- 113 (121)
T PF00567_consen 64 EDGRWYRAVITV----------DIDENQY-KVFLIDY--GNTEK----VSAS-DLRPLPP---------EFA-SLPPQ-- 113 (121)
T ss_dssp TTSEEEEEEEEE----------EECTTEE-EEEETTT--TEEEE----EEGG-GEEE--H---------HHC-SSSSS--
T ss_pred cCCceeeEEEEE----------eccccee-EEEEEec--CceEE----EcHH-HhhhhCH---------HHh-hCChh--
Confidence 346899998810 1112122 3579999 88775 6655 7788875 232 26887
Q ss_pred eEEEEEee
Q 002945 641 SIAFSFSG 648 (863)
Q Consensus 641 ~i~~~LaG 648 (863)
+++|.|+|
T Consensus 114 a~~~~L~g 121 (121)
T PF00567_consen 114 AIKCKLAG 121 (121)
T ss_dssp CEEEEET-
T ss_pred hEEEEEcC
Confidence 89999987
No 22
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=26.32 E-value=56 Score=35.17 Aligned_cols=67 Identities=25% Similarity=0.470 Sum_probs=43.4
Q ss_pred CCCEEEEeeCCCCCCCCCC---eeEEEEEeccCCCCCCCCCCC-ChhHHHHHHHHHhhcCCCe-----EEEEEceeccCC
Q 002945 21 SGDSLVITALSNPNPGPPR---EKTLTLSSIITPRLARRGGLD-EPFAWDSREFLRKLCIGKE-----VTFRVDYAVPNI 91 (863)
Q Consensus 21 dGDTi~v~~~~~~~~g~~~---~~~vrL~~IdaPe~~~~~~~~-ep~a~eAre~Lr~lliGk~-----V~~~~~~~~~~~ 91 (863)
.--.+++++. .||.+ .-+-|++||++|.+-....++ --+||.||.|+.+.+ |+. |.+.+. .+|
T Consensus 61 ~~gyvvlKD~----~Gp~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~-g~pipd~~lsLaIN---S~~ 132 (252)
T PRK05471 61 QAGYVLLKDR----NGPLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQARDFMSKKY-GKPIPDSAVSLAIN---SRY 132 (252)
T ss_pred CCCeEEEecC----CCCcceEEeecccccCccCccccCCCCccHHHHHHHHhHHHHHhh-CCCCChhheEEEec---CCC
Confidence 3445666655 35432 226789999999998655443 345999999999996 554 444443 246
Q ss_pred CcEE
Q 002945 92 GREF 95 (863)
Q Consensus 92 gR~~ 95 (863)
||.-
T Consensus 133 gRSQ 136 (252)
T PRK05471 133 GRTQ 136 (252)
T ss_pred Cccc
Confidence 7754
No 23
>PF14468 DUF4427: Protein of unknown function (DUF4427)
Probab=24.27 E-value=78 Score=30.22 Aligned_cols=73 Identities=25% Similarity=0.298 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhcCCCeEEEEEceeccCCCcEEEEEEe----CCccHHHHHHHcCCEEEEEccCc--C-CCCchhHHHHHH
Q 002945 64 AWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVIL----GDKNVAMLVVSEGWAKVKEQGSQ--K-GEASPFLAELLR 136 (863)
Q Consensus 64 a~eAre~Lr~lliGk~V~~~~~~~~~~~gR~~g~V~~----~g~nv~~~Lv~~G~A~v~~~~~~--~-~~~~~~~~~l~~ 136 (863)
+.+--+++.++...+ ++..+.|.|.+|-+++ |+..+-..||+.|+++|...+.- + +..++. ..|++
T Consensus 10 ~~~i~~~i~~l~S~~------d~~~~~~~~e~G~~wvWi~DN~~~~vRALl~~grV~v~~eGRYLl~l~~~~s~-~plr~ 82 (132)
T PF14468_consen 10 ADRINEYISELYSKK------DFLNDDYDREFGNAWVWIHDNQSEVVRALLQAGRVKVNKEGRYLLDLDLFDSD-WPLRK 82 (132)
T ss_pred HHHHHHHHHHHhccc------hhhcccchhhcCceEEEEecCcCHHHHHHHHcCceeeccCceeeeecccccCC-CchHH
Confidence 334445555554333 3333457788877765 56679999999999999665421 0 111221 13666
Q ss_pred HHHHHHH
Q 002945 137 LEEQAKL 143 (863)
Q Consensus 137 aE~~Ak~ 143 (863)
.|+-|+.
T Consensus 83 kE~~ak~ 89 (132)
T PF14468_consen 83 KEAMAKH 89 (132)
T ss_pred HHHHHHH
Confidence 6666653
No 24
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=23.96 E-value=1.5e+02 Score=26.71 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=22.7
Q ss_pred cccEEEEEeccCCEEEEEEcCCceEEEEEEee
Q 002945 187 PMQGIVEQARDGSTLRVYLLPEFQFVQVFVAG 218 (863)
Q Consensus 187 ~~~~~Ve~V~dG~t~rv~~~~~~~~~~v~l~G 218 (863)
.+.|+|+.+..++.|+|.+. ++..+.-.++|
T Consensus 8 e~~G~V~e~Lp~~~frV~Le-nG~~vla~isG 38 (87)
T PRK12442 8 ELDGIVDEVLPDSRFRVTLE-NGVEVGAYASG 38 (87)
T ss_pred EEEEEEEEECCCCEEEEEeC-CCCEEEEEecc
Confidence 46799999999999999986 44444444443
No 25
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=23.26 E-value=44 Score=35.89 Aligned_cols=67 Identities=24% Similarity=0.447 Sum_probs=42.9
Q ss_pred CCCEEEEeeCCCCCCCCCC---eeEEEEEeccCCCCCCCCCCC-ChhHHHHHHHHHhhcCCCe-----EEEEEceeccCC
Q 002945 21 SGDSLVITALSNPNPGPPR---EKTLTLSSIITPRLARRGGLD-EPFAWDSREFLRKLCIGKE-----VTFRVDYAVPNI 91 (863)
Q Consensus 21 dGDTi~v~~~~~~~~g~~~---~~~vrL~~IdaPe~~~~~~~~-ep~a~eAre~Lr~lliGk~-----V~~~~~~~~~~~ 91 (863)
+--.+++++. .||.+ .-+-|++||++|.+-....++ --.||.||.|+.+.+ |+. |.+.+. .+|
T Consensus 60 ~~gyvvlKD~----~Gp~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~-g~pipd~~lsLaIN---S~~ 131 (250)
T TIGR00672 60 NAGYVVLKDL----NGPLQYLLMPTYRINGTESPLLLDPSTPNFFWLAWQARDFMSKKY-GQPIPDRAVSLAIN---SRT 131 (250)
T ss_pred CCCeEEEeCC----CCCceeEEeeccccCCccChhhcCCCCccHHHHHHHHhHHHHHhc-CCCCChhheeEEec---CCC
Confidence 3445666665 35432 226789999999998655443 334999999999996 554 334433 246
Q ss_pred CcEE
Q 002945 92 GREF 95 (863)
Q Consensus 92 gR~~ 95 (863)
||.-
T Consensus 132 gRSQ 135 (250)
T TIGR00672 132 GRSQ 135 (250)
T ss_pred Cccc
Confidence 6654
No 26
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=22.13 E-value=1.8e+02 Score=25.02 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=22.7
Q ss_pred cccEEEEEeccCCEEEEEEcCCceEEEEEEee
Q 002945 187 PMQGIVEQARDGSTLRVYLLPEFQFVQVFVAG 218 (863)
Q Consensus 187 ~~~~~Ve~V~dG~t~rv~~~~~~~~~~v~l~G 218 (863)
.+.|+|+.+..++.|+|.+. ++..+.-+++|
T Consensus 6 e~~G~V~e~L~~~~f~V~l~-ng~~vla~i~G 36 (68)
T TIGR00008 6 EMEGKVTESLPNAMFRVELE-NGHEVLAHISG 36 (68)
T ss_pred EEEEEEEEECCCCEEEEEEC-CCCEEEEEecC
Confidence 45799999999999999986 44444444443
Done!