Query 002945
Match_columns 863
No_of_seqs 421 out of 2390
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 07:31:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bdl_A Staphylococcal nuclease 100.0 1.2E-66 3.9E-71 615.2 34.3 518 7-735 20-569 (570)
2 3bdl_A Staphylococcal nuclease 100.0 1.4E-62 4.7E-67 580.4 39.5 407 377-862 22-539 (570)
3 4eqp_A Thermonuclease; staphyl 99.9 2.8E-26 9.5E-31 222.9 14.1 133 6-154 4-139 (143)
4 4eqp_A Thermonuclease; staphyl 99.9 1.1E-23 3.8E-28 204.6 13.8 129 186-369 8-141 (143)
5 4b9x_A TDRD1, tudor domain-con 99.7 1.2E-16 4E-21 167.1 10.2 109 739-862 80-193 (226)
6 4b9w_A TDRD1, tudor domain-con 99.7 1.3E-16 4.6E-21 163.7 10.0 109 739-862 80-193 (201)
7 2wac_A CG7008-PA; unknown func 99.7 1.3E-17 4.5E-22 172.9 1.3 154 559-745 62-218 (218)
8 2wac_A CG7008-PA; unknown func 99.6 2.7E-15 9.1E-20 155.5 8.9 110 739-862 66-178 (218)
9 3ntk_A Maternal protein tudor; 99.5 1.3E-14 4.3E-19 144.8 7.7 101 739-860 62-166 (169)
10 2hqx_A P100 CO-activator tudor 99.5 1E-16 3.6E-21 169.5 -10.2 155 562-747 78-235 (246)
11 2hqx_A P100 CO-activator tudor 99.4 4.4E-14 1.5E-18 149.4 2.9 100 749-862 92-193 (246)
12 2diq_A Tudor and KH domain-con 99.0 1.4E-10 4.8E-15 107.2 1.8 48 749-796 60-107 (110)
13 4b9x_A TDRD1, tudor domain-con 98.8 4.2E-10 1.4E-14 117.4 -0.5 121 559-712 76-200 (226)
14 4b9w_A TDRD1, tudor domain-con 98.8 5.2E-10 1.8E-14 114.5 0.0 119 559-710 76-198 (201)
15 3fdr_A Tudor and KH domain-con 98.7 4.6E-09 1.6E-13 94.2 2.1 41 748-788 54-94 (94)
16 3ntk_A Maternal protein tudor; 98.3 3.5E-08 1.2E-12 98.2 -2.1 109 559-703 58-166 (169)
17 2eqk_A Tudor domain-containing 98.0 1.3E-06 4.5E-11 75.3 1.1 38 747-784 47-84 (85)
18 1mhn_A SurviVal motor neuron p 97.5 3.5E-05 1.2E-09 62.7 2.9 28 749-776 32-59 (59)
19 2d9t_A Tudor domain-containing 97.5 4.5E-05 1.5E-09 65.7 2.6 31 749-779 38-68 (78)
20 1g5v_A SurviVal motor neuron p 97.2 0.00012 4.1E-09 64.3 2.7 31 749-779 39-69 (88)
21 3s6w_A Tudor domain-containing 97.2 0.00014 4.7E-09 58.0 2.4 25 749-773 30-54 (54)
22 3pnw_C Tudor domain-containing 97.2 0.00015 5E-09 62.3 2.4 28 749-776 46-73 (77)
23 4a4f_A SurviVal of motor neuro 97.1 0.00019 6.6E-09 59.3 2.5 27 749-775 37-63 (64)
24 2equ_A PHD finger protein 20-l 93.3 0.029 9.9E-07 47.5 1.7 29 749-778 36-64 (74)
25 2ldm_A Uncharacterized protein 91.7 0.023 7.7E-07 48.9 0.0 27 749-776 33-59 (81)
26 3p8d_A Medulloblastoma antigen 84.7 0.48 1.6E-05 39.2 2.5 28 748-776 32-59 (67)
27 2diq_A Tudor and KH domain-con 84.7 0.11 3.8E-06 47.2 -1.5 72 424-495 33-109 (110)
28 1mhn_A SurviVal motor neuron p 83.2 0.024 8.2E-07 45.8 -5.9 45 559-620 14-58 (59)
29 3s6w_A Tudor domain-containing 82.9 0.02 7E-07 45.3 -6.3 43 559-618 12-54 (54)
30 4a4f_A SurviVal of motor neuro 82.8 0.022 7.5E-07 46.8 -6.4 44 559-619 19-62 (64)
31 2eqk_A Tudor domain-containing 82.2 0.012 4E-07 50.9 -8.4 53 536-620 23-75 (85)
32 3qii_A PHD finger protein 20; 80.5 0.85 2.9E-05 39.4 2.5 28 748-776 47-74 (85)
33 2d9t_A Tudor domain-containing 80.3 0.034 1.2E-06 47.6 -6.3 45 559-620 20-64 (78)
34 3pnw_C Tudor domain-containing 80.2 0.033 1.1E-06 47.6 -6.4 45 559-620 28-72 (77)
35 1g5v_A SurviVal motor neuron p 79.1 0.049 1.7E-06 47.7 -5.7 45 559-620 21-65 (88)
36 2dig_A Lamin-B receptor; tudor 57.6 5.8 0.0002 32.3 2.5 28 748-776 40-67 (68)
37 3fdr_A Tudor and KH domain-con 51.0 1.8 6E-05 37.9 -1.7 62 424-485 28-94 (94)
38 2l8d_A Lamin-B receptor; DNA b 35.9 20 0.0007 29.1 2.5 25 748-773 37-61 (66)
No 1
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.2e-66 Score=615.17 Aligned_cols=518 Identities=26% Similarity=0.359 Sum_probs=385.1
Q ss_pred CCCceEEEEEeEecCCCEEEEeeCCCCCCCCCCeeEEEEEeccCCCCCCCCC----------CCChhHHHHHHHHHhhcC
Q 002945 7 AGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGG----------LDEPFAWDSREFLRKLCI 76 (863)
Q Consensus 7 ~~~~~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~vrL~~IdaPe~~~~~~----------~~ep~a~eAre~Lr~lli 76 (863)
+....+.|+|++|+|||||+|+... | ++++|||+||||||+.++++ .++|||++||||||++|+
T Consensus 20 ~~~~~~~~~V~~V~DGDTi~v~~~~----g--~~~~VRL~gIdaPe~~~~~~~~~~~~~~~~~~~p~g~eA~e~L~~~l~ 93 (570)
T 3bdl_A 20 HMDKQFVAKVMQVLNADAIVVKLNS----G--DYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLI 93 (570)
T ss_dssp -CCSEEEEEEEEEETTTEEEEECTT----S--CEEEEEETTEECCCCTTSCCGGGTTTCCHHHHSTTHHHHHHHHHHHHT
T ss_pred cCCcEEEEEEEEEccCCEEEEECCC----C--CEEEEEEEEEcCCCcCCCCCccccccccCcccchhHHHHHHHHHHHhC
Confidence 3567789999999999999998642 3 57899999999999965432 479999999999999999
Q ss_pred CCeEEEEEce---------eccCCC-cEEEEEEeCCccHHHHHHHcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHcCC
Q 002945 77 GKEVTFRVDY---------AVPNIG-REFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGL 146 (863)
Q Consensus 77 Gk~V~~~~~~---------~~~~~g-R~~g~V~~~g~nv~~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~~~ 146 (863)
||+|+|.+++ ..|+|| |.+|+||++|.|||++||++|||++++++....+++.+|++|.+||++||++++
T Consensus 94 gk~V~~~~~~~~~~~~~~~~~D~yg~R~la~v~~~g~~v~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~A~~~~~ 173 (570)
T 3bdl_A 94 GKKVNVTVDYIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGK 173 (570)
T ss_dssp TCEEEEEEEEEESSCCCSSCSSSSCCEEEEEEEETTEEHHHHHHHTTSSEECCCSSTTSCCCTTHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEEeeccccccccccCCCCceEEEEEccCCccHHHHHHhCcCEEEEeecCCccccChHHHHHHHHHHHHHHhCC
Confidence 9999999998 358899 999999999999999999999999997532112356778999999999999999
Q ss_pred CCcCCCCCCcccccccCCCCcCCCCchhhHHHHhhh-hcCCcccEEEEEeccCCEEEEEEcCCceEEEEEEeeecCCCCC
Q 002945 147 GRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDA-NKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVA 225 (863)
Q Consensus 147 GiWs~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~Ve~V~dG~t~rv~~~~~~~~~~v~l~Gi~~P~~~ 225 (863)
|||+.++.+.. .++++.++ ..++++|++. ++++++.|+|++|+|||||+|+++++++.++|||+||||||+.
T Consensus 174 GlW~~~~~~~~-~~~d~~~~------~~~~~~~l~~~~~~~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~GIdaPe~~ 246 (570)
T 3bdl_A 174 GLHSKKEVPIH-RVADISGD------TQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGA 246 (570)
T ss_dssp GGGCCSCCCCC-CCEECTTC------HHHHHHHHHHHHHTCEEEEEEEEESSSSEEEEEETTTTEEEEEEESSEECCCCC
T ss_pred CCCCCCCCCcc-eeeecCCc------hHHHHHHHHHHhhCCeeeEEEEEEeCCCEEEEEEcCCCcEEEEEEEEEECCCCC
Confidence 99998654322 34666543 4688999995 5799999999999999999999988899999999999999986
Q ss_pred CCCCccccCcccccCCCccccccccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHHccCceEEEEEeeecCCCCEE
Q 002945 226 RRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLI 305 (863)
Q Consensus 226 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep~g~eAk~f~~~~ll~r~V~v~~~~~Dkygr~l 305 (863)
+.. .| ...+.+|||.||++|++++|++|+|+|++.+.|+|||++
T Consensus 247 ~~~-----------~~-------------------------~~~~~~~~g~eA~~~l~~~l~~r~V~~~~~~~D~ygR~l 290 (570)
T 3bdl_A 247 RNL-----------PG-------------------------LVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFI 290 (570)
T ss_dssp EEE-----------TT-------------------------EEECCCTTHHHHHHHHHHHHTTCEEEEEEEEECTTSCEE
T ss_pred CCC-----------CC-------------------------CccccChHHHHHHHHHHHHhcCCeEEEEEEeEcCCCCEE
Confidence 521 00 012478999999999999999999999999999999999
Q ss_pred EEEEecCCCChhHHHHHHHhcCcEEEEecccccchHHHHHHHHHHHHHHHHhcCccCcCCCCCCCCc-------cccccc
Q 002945 306 GSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNS-------KAIHDQ 378 (863)
Q Consensus 306 a~V~~~~g~~~~di~~~LL~~GlA~v~~~~~~~~~~~~~~~l~~AE~~Ak~~k~GiW~~~~~~~~~~-------~~~~~~ 378 (863)
|+||++ |. ||+++||++|||+++ ++...... ...|++||++||++++|||+++.|+.... ......
T Consensus 291 a~v~~~-~~---~v~~~Lv~~GlA~~~-~~~~~~~~--~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~~~~~~~~~~~~~ 363 (570)
T 3bdl_A 291 GWLHID-GA---NLSVLLVEHALSKVH-FTAERSSY--YKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERSAS 363 (570)
T ss_dssp EEEEET-TE---EHHHHHHHTTSSEEC-GGGTTSTT--HHHHHHHHHHHHHHTCGGGC----------CCCCCCSSCCCC
T ss_pred EEEEEC-CE---EHHHHHHHcCCcEEE-ecCCCcch--HHHHHHHHHHHHHhCCCCCcccccccchhcccccccCCCCCc
Confidence 999996 44 499999999999998 33322222 25899999999999999999988752110 112245
Q ss_pred ceeeEEEEEeeCcEEEEEcCCCCCCCCccceEEEeeeccCCCCCCCCCCCccchhhHHhHHHHHhhccCcEEEEEEeeee
Q 002945 379 NFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSR 458 (863)
Q Consensus 379 ~~~g~V~~V~sgd~i~I~~~~~~~~~~~~e~~v~Lssi~~P~~~~~~~~~~~e~~~~earEflR~~~iGk~V~v~vdy~~ 458 (863)
.+...|+.|.+...++|+..+.. . .-+-..-+-.+++..
T Consensus 364 ~~~V~Vt~V~sp~~Fyvq~~~~~------~--------------------~l~~l~~~l~~~~~~--------------- 402 (570)
T 3bdl_A 364 YKPVFVTEITDDLHFYVQDVETG------T--------------------QLEKLMENMRNDIAS--------------- 402 (570)
T ss_dssp CEEEEEEEECTTSEEEEEEGGGH------H--------------------HHHHHHHHHHHHHHH---------------
T ss_pred EEEEEEEEEECCCeEEEEECCcH------H--------------------HHHHHHHHHHHHHhc---------------
Confidence 57888999999998988873310 0 000111111222211
Q ss_pred cccccccccccCCCCCCCCCCCCCcccccccCCCCCCCccccccceeeeeeeEEecCCCCCCCCCchhhhccccCCCCCC
Q 002945 459 KVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAG 538 (863)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g 538 (863)
..+ . .+ .+. ...|
T Consensus 403 ~~~------------l---~~-------------------------------~~~---------------------~~~G 415 (570)
T 3bdl_A 403 HPP------------V---EG-------------------------------SYA---------------------PRRG 415 (570)
T ss_dssp SCC------------C---TT-------------------------------CCC---------------------CCTT
T ss_pred CCC------------C---CC-------------------------------CcC---------------------CCcC
Confidence 000 0 00 000 0012
Q ss_pred cchhHHHHhcccceeeecCCcccccHHHHHHHHHHHHHHhcCCCcCCCCCCCceEEEeCCCCccccccccccccccCCcc
Q 002945 539 VNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRI 618 (863)
Q Consensus 539 ~nvae~lv~~G~a~v~~~r~~~~~s~~YraLv~ae~~A~~~~~Gi~s~k~~~~~~~~D~~~gn~~~ak~~l~~~~r~~~l 618 (863)
.-++. + ++ |+.|||+.|.. +.+.... .+.|+|| ||.+. ++.. .+++|
T Consensus 416 ~~c~a-----------~---~~-d~~wyRa~I~~----------v~~~~~~-~V~fvDy--Gn~e~----v~~~-~Lr~l 462 (570)
T 3bdl_A 416 EFCIA-----------K---FV-DGEWYRARVEK----------VESPAKI-HVFYIDY--GNREV----LPST-RLGTL 462 (570)
T ss_dssp CEEEE-----------E---CT-TSCEEEEEEEE----------EEETTEE-EEEETTT--CCEEE----ECGG-GEECC
T ss_pred CEEEE-----------E---EC-CCCEEEEEEEE----------EcCCCeE-EEEEEeC--CCeEE----EEHH-HCccC
Confidence 22221 1 33 57899999884 2222222 3579999 89875 7766 88888
Q ss_pred ceEEEEEecCCEEEE-EecCCCceEEEEEeeecCCCCCchhHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEeC--
Q 002945 619 PAVVEYVLSGHRFKV-LIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES-- 695 (863)
Q Consensus 619 ~~~Ve~V~dG~~~~v-~lp~~~~~i~~~LaGI~~P~~~e~~~~EA~~~l~~~ll~r~V~v~v~~~D~~G~~~g~l~~~-- 695 (863)
+. .|.. .+|.+ ++.|+|+||.+|. +..|..+|..+|++++.++.+.++|...+ .|.+++.|+..
T Consensus 463 ~~---------~f~~l~lP~q--A~~c~La~v~pp~-~~~w~~ea~~~f~~lv~~k~l~~~V~~~~-~~~~~V~L~~~~~ 529 (570)
T 3bdl_A 463 SP---------AFSTRVLPAQ--ATEYAFAFIQVPQ-DDDARTDAVDSVVRDIQNTQCLLNVEHLS-AGCPHVTLQFADS 529 (570)
T ss_dssp CG---------GGSTTTSCCC--CEEEEETTEECCS-SHHHHHHHHHHHHHHHTTEEEEEEEEECC-SSSCEEEEEETTT
T ss_pred CH---------HHhcCCCCcc--eEEEEECCeEcCC-CCCCcHHHHHHHHHHhCCCEEEEEEEEEe-CCcEEEEEEECCC
Confidence 85 2321 13887 8999999999876 77899999999999999999999999987 57889999984
Q ss_pred CccHHHHHHHcCCEEEeeecCCCC-CCChHHHHHHHHHHHh
Q 002945 696 RTNVAVILLEAGLAKLQTSFGSDR-IPDSHLLEQAEKSAKS 735 (863)
Q Consensus 696 ~~ni~~~Lv~~GlA~v~~~~~~~~-~~~~~~l~~aE~~Ak~ 735 (863)
+.+||..||++|||...+.- ... ....+.|+++|+.||.
T Consensus 530 ~~sIn~~Lv~~G~A~~~~~~-~~~~~~~~~~l~~~q~~Ak~ 569 (570)
T 3bdl_A 530 KGDVGLGLVKEGLVMVEVRK-EKQFQKVITEYLNAQESAKS 569 (570)
T ss_dssp CCBHHHHHHHTTSSEECCCC-SGGGHHHHHHHHHHHHTC--
T ss_pred CccHHHHHHHCCCeEcchhh-hhhHHHHHHHHHHHHHHHhc
Confidence 67899999999999985211 000 1123678888888875
No 2
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.4e-62 Score=580.39 Aligned_cols=407 Identities=39% Similarity=0.643 Sum_probs=347.8
Q ss_pred ccceeeEEEEEeeCcEEEEEcCCCCCCCCccceEEEeeeccCCCCCC-CCCC-------CccchhhHHhHHHHHhhccCc
Q 002945 377 DQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGN-PRKD-------EKPAAYAREAREFLRTRLIGR 448 (863)
Q Consensus 377 ~~~~~g~V~~V~sgd~i~I~~~~~~~~~~~~e~~v~Lssi~~P~~~~-~~~~-------~~~e~~~~earEflR~~~iGk 448 (863)
.+.++|+|++|++||||.|...+ +++++|.|++|+||++.. +.++ ..++||++|||||||++|+||
T Consensus 22 ~~~~~~~V~~V~DGDTi~v~~~~------g~~~~VRL~gIdaPe~~~~~~~~~~~~~~~~~~~p~g~eA~e~L~~~l~gk 95 (570)
T 3bdl_A 22 DKQFVAKVMQVLNADAIVVKLNS------GDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGK 95 (570)
T ss_dssp CSEEEEEEEEEETTTEEEEECTT------SCEEEEEETTEECCCCTTSCCGGGTTTCCHHHHSTTHHHHHHHHHHHHTTC
T ss_pred CcEEEEEEEEEccCCEEEEECCC------CCEEEEEEEEEcCCCcCCCCCccccccccCcccchhHHHHHHHHHHHhCCC
Confidence 46899999999999999998532 248999999999999742 2211 157999999999999999999
Q ss_pred EEEEEEeeeecccccccccccCCCCCCCCCCCCCcccccccCCCCCCCccccccceeeeeeeEEecCCCCCCCCCchhhh
Q 002945 449 QVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVA 528 (863)
Q Consensus 449 ~V~v~vdy~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~v~~~~~~~~~~~~~~~~~ 528 (863)
+|.++++|.++.... .+ ....+.+ +.+++|++
T Consensus 96 ~V~~~~~~~~~~~~~--------------~~-----------------~~D~yg~--R~la~v~~--------------- 127 (570)
T 3bdl_A 96 KVNVTVDYIRPASPA--------------TE-----------------TVPAFSE--RTCATVTI--------------- 127 (570)
T ss_dssp EEEEEEEEEESSCCC--------------SS-----------------CSSSSCC--EEEEEEEE---------------
T ss_pred EEEEEEEeecccccc--------------cc-----------------ccCCCCc--eEEEEEcc---------------
Confidence 999999998764110 00 0011222 45678887
Q ss_pred ccccCCCCCCcchhHHHHhcccceeeecC-CcccccHHHHHHHHHHHHHHhcCCCcCCCCCCCceEEEeCCCCccccccc
Q 002945 529 QSNAAGQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARD 607 (863)
Q Consensus 529 ~~~~~~~~~g~nvae~lv~~G~a~v~~~r-~~~~~s~~YraLv~ae~~A~~~~~Gi~s~k~~~~~~~~D~~~gn~~~ak~ 607 (863)
+|.||++.||++|||+|.+|| .+++++..|+.|.++|++|+++++|||+.+.+++.+++|++ ++.++|++
T Consensus 128 --------~g~~v~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~A~~~~~GlW~~~~~~~~~~~d~~-~~~~~~~~ 198 (570)
T 3bdl_A 128 --------GGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADIS-GDTQKAKQ 198 (570)
T ss_dssp --------TTEEHHHHHHHTTSSEECCCSSTTSCCCTTHHHHHHHHHHHHHTTCGGGCCSCCCCCCCEECT-TCHHHHHH
T ss_pred --------CCccHHHHHHhCcCEEEEeecCCccccChHHHHHHHHHHHHHHhCCCCCCCCCCCcceeeecC-CchHHHHH
Confidence 357999999999999999987 44567888999999999999999999998766666799996 58899999
Q ss_pred cccccccCCccceEEEEEecCCEEEEEecCCCceEEEEEeeecCCC----------CCchhHHHHHHHHHHHhcCceEEE
Q 002945 608 FLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPG----------RNERYSNEALLLMRQKILQRDVEI 677 (863)
Q Consensus 608 ~l~~~~r~~~l~~~Ve~V~dG~~~~v~lp~~~~~i~~~LaGI~~P~----------~~e~~~~EA~~~l~~~ll~r~V~v 677 (863)
|++.+++.++++|+|++|+|||||+|++|+.++.+++||+||+||+ ..+|||.+|+.|+++++++|+|+|
T Consensus 199 ~l~~~~~~~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~GIdaPe~~~~~~~~~~~~~~~g~eA~~~l~~~l~~r~V~~ 278 (570)
T 3bdl_A 199 FLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVEV 278 (570)
T ss_dssp HHHHHHHTCEEEEEEEEESSSSEEEEEETTTTEEEEEEESSEECCCCCEEETTEEECCCTTHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhhCCeeeEEEEEEeCCCEEEEEEcCCCcEEEEEEEEEECCCCCCCCCCCccccChHHHHHHHHHHHHhcCCeEEE
Confidence 9999988999999999999999999999988889999999999996 368999999999999999999999
Q ss_pred EEEEEcCCCcEEEEEEeCCccHHHHHHHcCCEEEeeecCCCCCCChHHHHHHHHHHHhccccccccccc-----------
Q 002945 678 EVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVE----------- 746 (863)
Q Consensus 678 ~v~~~D~~G~~~g~l~~~~~ni~~~Lv~~GlA~v~~~~~~~~~~~~~~l~~aE~~Ak~~r~GiW~~~~~----------- 746 (863)
++.+.|+|||++++||+++.|||+.||++|||+++ +...+..+...|.+||++||++++|||+.+.+
T Consensus 279 ~~~~~D~ygR~la~v~~~~~~v~~~Lv~~GlA~~~--~~~~~~~~~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~~~~~~ 356 (570)
T 3bdl_A 279 EVESMDKAGNFIGWLHIDGANLSVLLVEHALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLE 356 (570)
T ss_dssp EEEEECTTSCEEEEEEETTEEHHHHHHHTTSSEEC--GGGTTSTTHHHHHHHHHHHHHHTCGGGC----------CCCCC
T ss_pred EEEeEcCCCCEEEEEEECCEEHHHHHHHcCCcEEE--ecCCCcchHHHHHHHHHHHHHhCCCCCcccccccchhcccccc
Confidence 99999999999999999999999999999999996 44445566678999999999999999986521
Q ss_pred -------------------------------------------------------------------------------c
Q 002945 747 -------------------------------------------------------------------------------S 747 (863)
Q Consensus 747 -------------------------------------------------------------------------------~ 747 (863)
.
T Consensus 357 ~~~~~~~~~~V~Vt~V~sp~~Fyvq~~~~~~~l~~l~~~l~~~~~~~~~l~~~~~~~~G~~c~a~~~d~~wyRa~I~~v~ 436 (570)
T 3bdl_A 357 EKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFVDGEWYRARVEKVE 436 (570)
T ss_dssp CSSCCCCCEEEEEEEECTTSEEEEEEGGGHHHHHHHHHHHHHHHHHSCCCTTCCCCCTTCEEEEECTTSCEEEEEEEEEE
T ss_pred cCCCCCcEEEEEEEEEECCCeEEEEECCcHHHHHHHHHHHHHHHhcCCCCCCCcCCCcCCEEEEEECCCCEEEEEEEEEc
Confidence 1
Q ss_pred CCCeEEEEEEeCCceeEEeCCCccCCCCCCCCC--CCceEEeeeccccCCCCCCCcHHHHHHHHHHhcccCCCEEEEEEE
Q 002945 748 VNDKFEVFYIDYGNQELVPYNKLRPIDPSLSST--PPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVE 825 (863)
Q Consensus 748 ~~~~~~V~fIDyGn~e~V~~s~LR~L~~~~~~l--PpqA~~c~LA~vk~p~~~~~w~~eA~~~f~~~ll~~~k~l~a~V~ 825 (863)
....+.|+||||||++.|+.++||+||++|..+ |+||++|+|++|+||. +.+|+.+|+++|+++ +.|+.|.++|.
T Consensus 437 ~~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~l~lP~qA~~c~La~v~pp~-~~~w~~ea~~~f~~l--v~~k~l~~~V~ 513 (570)
T 3bdl_A 437 SPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQ-DDDARTDAVDSVVRD--IQNTQCLLNVE 513 (570)
T ss_dssp ETTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCCEEEEETTEECCS-SHHHHHHHHHHHHHH--HTTEEEEEEEE
T ss_pred CCCeEEEEEEeCCCeEEEEHHHCccCCHHHhcCCCCcceEEEEECCeEcCC-CCCCcHHHHHHHHHH--hCCCEEEEEEE
Confidence 236789999999999999999999999999866 9999999999999885 578999999999999 46899999998
Q ss_pred EEcCCCCcccCCCCCceEEEEEEecCCCCchhHhhhc
Q 002945 826 ERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQ 862 (863)
Q Consensus 826 ~~~~~g~~~~~~~~~~~~~v~L~d~~~~~sIN~~Lv~ 862 (863)
+++. +.++|+|+++++..+||..||+
T Consensus 514 ~~~~-----------~~~~V~L~~~~~~~sIn~~Lv~ 539 (570)
T 3bdl_A 514 HLSA-----------GCPHVTLQFADSKGDVGLGLVK 539 (570)
T ss_dssp ECCS-----------SSCEEEEEETTTCCBHHHHHHH
T ss_pred EEeC-----------CcEEEEEEECCCCccHHHHHHH
Confidence 8762 4588999998778899999986
No 3
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=99.93 E-value=2.8e-26 Score=222.85 Aligned_cols=133 Identities=23% Similarity=0.239 Sum_probs=111.1
Q ss_pred CCCCceEEEEEeEecCCCEEEEeeCCCCCCCCCCeeEEEEEeccCCCCCCCCCCCChhHHHHHHHHHhhcC-CCeEEEEE
Q 002945 6 AAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCI-GKEVTFRV 84 (863)
Q Consensus 6 ~~~~~~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~vrL~~IdaPe~~~~~~~~ep~a~eAre~Lr~lli-Gk~V~~~~ 84 (863)
+..-..+.|+|++|+|||||.|..+ | .+.+|||+||||||+ .+|||.+|++||+++|. |++|.|.+
T Consensus 4 ~~~~~~~~~~V~~V~DGDTi~v~~~-----g--~~~~VRL~gIDaPE~------~q~~g~~A~~~l~~ll~~g~~V~~~~ 70 (143)
T 4eqp_A 4 TKKLHKEPATLIKAIDGDTVKLMYK-----G--QPMTFRLLLVDTPEF------NEKYGPEASAFTKKMVENAKKDEVEF 70 (143)
T ss_dssp ---CCEEEEEEEEECSSSEEEEEET-----T--EEEEEEETTEECCCT------TSTTHHHHHHHHHHHHHHCSCEEEEC
T ss_pred CCCCceeeEEEEEEECCCEEEEEeC-----C--cEEEEEEEeecCCCc------CCchHHHHHHHHHHHHhcCCeEEEEE
Confidence 3445677899999999999999965 2 367999999999997 48999999999999998 89999998
Q ss_pred c--eeccCCCcEEEEEEeCCccHHHHHHHcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHcCCCCcCCCCC
Q 002945 85 D--YAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPG 154 (863)
Q Consensus 85 ~--~~~~~~gR~~g~V~~~g~nv~~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~~~GiWs~~~~ 154 (863)
+ ...|+|||.+|+||++|.|||++||++|||+++..+. ....+.+.|..||++||++++|||+...|
T Consensus 71 d~~~~~D~ygR~la~v~~~g~~vn~~lv~~GlA~v~~~~~---~~~~~~~~~~~aE~~Ar~~k~GlW~~~~p 139 (143)
T 4eqp_A 71 DKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYK---GNNTHEQLLRKAEAQAKKEKLNIWSEDNA 139 (143)
T ss_dssp CSSCSBCTTSCEEEEEEETTEEHHHHHHHTTSSEECCCCT---TSCTTHHHHHHHHHHHHHTTCGGGC----
T ss_pred ccccccCCCCCEEEEEEECCchHHHHHHHCCCeEEEeecC---CCcchHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 6 3578999999999999999999999999999965443 12356678999999999999999998654
No 4
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=99.90 E-value=1.1e-23 Score=204.56 Aligned_cols=129 Identities=23% Similarity=0.363 Sum_probs=105.4
Q ss_pred CcccEEEEEeccCCEEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhhhcccC
Q 002945 186 RPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASA 265 (863)
Q Consensus 186 ~~~~~~Ve~V~dG~t~rv~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 265 (863)
...+|+|.+|+|||||+|.. +++.++|||+||||||+
T Consensus 8 ~~~~~~V~~V~DGDTi~v~~--~g~~~~VRL~gIDaPE~----------------------------------------- 44 (143)
T 4eqp_A 8 HKEPATLIKAIDGDTVKLMY--KGQPMTFRLLLVDTPEF----------------------------------------- 44 (143)
T ss_dssp CEEEEEEEEECSSSEEEEEE--TTEEEEEEETTEECCCT-----------------------------------------
T ss_pred ceeeEEEEEEECCCEEEEEe--CCcEEEEEEEeecCCCc-----------------------------------------
Confidence 44579999999999999986 46778999999999995
Q ss_pred CCCCCCchhHHHHHHHHHHHcc-CceEEEEE---eeecCCCCEEEEEEecCCCChhHHHHHHHhcCcEEEE-ecccccch
Q 002945 266 GQQSTDEPFALDAKYFTEMRVL-NREVRIVL---EGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYI-EWSANMME 340 (863)
Q Consensus 266 ~~~~~~ep~g~eAk~f~~~~ll-~r~V~v~~---~~~Dkygr~la~V~~~~g~~~~di~~~LL~~GlA~v~-~~~~~~~~ 340 (863)
.+|||.+|++|++++|. ++.|+|++ .+.|+|||++|+||+ +|. ||+++||++|||+++ .+..+. .
T Consensus 45 -----~q~~g~~A~~~l~~ll~~g~~V~~~~d~~~~~D~ygR~la~v~~-~g~---~vn~~lv~~GlA~v~~~~~~~~-~ 114 (143)
T 4eqp_A 45 -----NEKYGPEASAFTKKMVENAKKDEVEFDKGQRTDKYGRGLAYIYA-DGK---MVNEALVRQGLAKVAYVYKGNN-T 114 (143)
T ss_dssp -----TSTTHHHHHHHHHHHHHHCSCEEEECCSSCSBCTTSCEEEEEEE-TTE---EHHHHHHHTTSSEECCCCTTSC-T
T ss_pred -----CCchHHHHHHHHHHHHhcCCeEEEEEccccccCCCCCEEEEEEE-CCc---hHHHHHHHCCCeEEEeecCCCc-c
Confidence 36899999999999999 69999998 479999999999997 665 499999999999985 333222 2
Q ss_pred HHHHHHHHHHHHHHHHhcCccCcCCCCCC
Q 002945 341 EDAKRRLKAADLQAKKTRLRMWTNYVPPQ 369 (863)
Q Consensus 341 ~~~~~~l~~AE~~Ak~~k~GiW~~~~~~~ 369 (863)
. ...|.+||++||++++|||+...|++
T Consensus 115 ~--~~~~~~aE~~Ar~~k~GlW~~~~p~~ 141 (143)
T 4eqp_A 115 H--EQLLRKAEAQAKKEKLNIWSEDNADS 141 (143)
T ss_dssp T--HHHHHHHHHHHHHTTCGGGC------
T ss_pred h--HHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 2 25899999999999999999987754
No 5
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=99.66 E-value=1.2e-16 Score=167.05 Aligned_cols=109 Identities=22% Similarity=0.313 Sum_probs=93.7
Q ss_pred cccccccc---cCCCeEEEEEEeCCceeEEeCCCccCCCCCCCCCCCceEEeeeccccCCCCCCCcHHHHHHHHHHhccc
Q 002945 739 KIWENYVE---SVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYN 815 (863)
Q Consensus 739 GiW~~~~~---~~~~~~~V~fIDyGn~e~V~~s~LR~L~~~~~~lPpqA~~c~LA~vk~p~~~~~w~~eA~~~f~~~ll~ 815 (863)
|.|-.... ..++.++|+||||||++.|+.++||+||++|..+|+||++|+|++|+|+ +.+|+.+|.++|+++ +
T Consensus 80 ~~WyRa~V~~~~~~~~~~V~~vDyGn~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~--~~~w~~ea~~~f~~l--~ 155 (226)
T 4b9x_A 80 GNWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP--NKHWTKEATARFQAC--V 155 (226)
T ss_dssp TEEEEEEEEEECSSSEEEEECTTTCCEEEEEGGGEECCCGGGSSSCBCCEEEEESSEECS--SSSCCHHHHHHHHHH--H
T ss_pred CeEEEEEEEEECCCCeEEEEEEecCCEEEEEHHHhccChHHHcccccceEEEEEecEECC--CCCCCHHHHHHHHHH--H
Confidence 45554433 2456799999999999999999999999999999999999999999987 578999999999999 5
Q ss_pred CCCEEEEEEEEEcCCCCcccCCCCCceEEEEEEecCC--CCchhHhhhc
Q 002945 816 SSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDA--EISINTLMVQ 862 (863)
Q Consensus 816 ~~k~l~a~V~~~~~~g~~~~~~~~~~~~~v~L~d~~~--~~sIN~~Lv~ 862 (863)
.|+.|.|+|..+.. +.++|.|+|.+. +.+||..||+
T Consensus 156 ~~k~l~~~V~~~~~-----------~~~~V~L~d~~~~~~~~I~~~Lv~ 193 (226)
T 4b9x_A 156 VGLKLQARVVEITA-----------NGVGVELTDLSTPYPKIISDVLIR 193 (226)
T ss_dssp TTCCEEEEEEEECS-----------SCEEEEEEECSSSSCEEHHHHHHH
T ss_pred CCCeEEEEEEEEeC-----------CeEEEEEEECCCCCCccHHHHHHH
Confidence 79999999988773 447899999865 4679999985
No 6
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=99.66 E-value=1.3e-16 Score=163.65 Aligned_cols=109 Identities=22% Similarity=0.313 Sum_probs=93.3
Q ss_pred cccccccc---cCCCeEEEEEEeCCceeEEeCCCccCCCCCCCCCCCceEEeeeccccCCCCCCCcHHHHHHHHHHhccc
Q 002945 739 KIWENYVE---SVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYN 815 (863)
Q Consensus 739 GiW~~~~~---~~~~~~~V~fIDyGn~e~V~~s~LR~L~~~~~~lPpqA~~c~LA~vk~p~~~~~w~~eA~~~f~~~ll~ 815 (863)
|.|-.... ..++.++|+||||||++.|+.++||+||++|..+|+||++|+|++|+|+ +.+|+.+|.++|+++ +
T Consensus 80 ~~wyRa~V~~~~~~~~~~V~~vDyG~~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~--~~~w~~ea~~~f~~l--~ 155 (201)
T 4b9w_A 80 GNWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP--NKHWTKEATARFQAC--V 155 (201)
T ss_dssp TEEEEEEEEEECTTSCEEEEETTTCCEEEECGGGEEECCGGGGSSCBCCEEEEESSEECS--SSSCCHHHHHHHHHH--H
T ss_pred CeEEEEEEEEECCCCeEEEEEEccCCEEEEEHHHhccChHhHcccchhhEEEEEcCEEcC--CCCCCHHHHHHHHHH--H
Confidence 44544433 2456799999999999999999999999999999999999999999987 578999999999999 5
Q ss_pred CCCEEEEEEEEEcCCCCcccCCCCCceEEEEEEecCC--CCchhHhhhc
Q 002945 816 SSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDA--EISINTLMVQ 862 (863)
Q Consensus 816 ~~k~l~a~V~~~~~~g~~~~~~~~~~~~~v~L~d~~~--~~sIN~~Lv~ 862 (863)
.++.|.|+|..+.. +.++|.|+|.++ +.+||..||+
T Consensus 156 ~~k~l~~~V~~~~~-----------~~~~V~L~d~~~~~~~~I~~~Lv~ 193 (201)
T 4b9w_A 156 VGLKLQARVVEITA-----------NGVGVELTDLSTPYPKIISDVLIR 193 (201)
T ss_dssp TTCCEEEEEEEEET-----------TEEEEEEEECSSSSCEEHHHHHHH
T ss_pred CCCEEEEEEEEEeC-----------CEEEEEEEECCCCCccchHHHHHH
Confidence 79999999987763 458899998765 4679999985
No 7
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=99.65 E-value=1.3e-17 Score=172.89 Aligned_cols=154 Identities=19% Similarity=0.275 Sum_probs=121.0
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCcCCCCCCCceEEEeCCCCccccccccccccccCCccceEEEEEecCCEEEEEecCC
Q 002945 559 FEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKE 638 (863)
Q Consensus 559 ~~~~s~~YraLv~ae~~A~~~~~Gi~s~k~~~~~~~~D~~~gn~~~ak~~l~~~~r~~~l~~~Ve~V~dG~~~~v~lp~~ 638 (863)
+++|+.|||+.|.. +.. ... .+.|+|| ||++. ++.. ++++|+. .|. .+|.+
T Consensus 62 ~~~d~~wyRa~V~~----------v~~-~~~-~V~~vDy--G~~~~----v~~~-~l~~l~~---------~~~-~~p~~ 112 (218)
T 2wac_A 62 FTLDNQWYRAKVER----------VQG-SNA-TVLYIDY--GNKET----LPTN-RLAALPP---------AFS-SEKPY 112 (218)
T ss_dssp CTTTCCEEEEEEEE----------EET-TEE-EEEETTT--CCEEE----EEGG-GEEECCG---------GGS-SSCCS
T ss_pred ECCCCeEEEEEEEE----------ecC-CeE-EEEEEec--CCeEE----EchH-HcccCCh---------hhc-cCCcc
Confidence 45668899998884 222 122 3579999 89875 7765 7888875 232 36877
Q ss_pred CceEEEEEeeecCCCCCchhHHHHHHHHHHHhcCceEEEEEEEEcCCCc-EEEEEEe--CCccHHHHHHHcCCEEEeeec
Q 002945 639 TCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGT-FLGSLWE--SRTNVAVILLEAGLAKLQTSF 715 (863)
Q Consensus 639 ~~~i~~~LaGI~~P~~~e~~~~EA~~~l~~~ll~r~V~v~v~~~D~~G~-~~g~l~~--~~~ni~~~Lv~~GlA~v~~~~ 715 (863)
+++|+|+||++|+ +++|+.+|..+|++++.++.|.+++...| +|+ .++.|+. ++.+||..||++|||++++..
T Consensus 113 --a~~~~Lagv~~p~-~~~w~~eA~~~l~~lv~~k~v~~~v~~~d-~g~~~~V~L~~~~~~~~in~~Lv~~G~A~~~~~~ 188 (218)
T 2wac_A 113 --ATEYALALVALPT-DNEDKEEALRAFSEDVLNHKVQLNVELKV-TGSPNLATLRDPTTKVDFGKQLVAEGLVLAEQRG 188 (218)
T ss_dssp --EEEEEETTEECCS-SHHHHHHHHHHHHHHHBTCEEEEEEEECC-TTSCEEEEEECTTTCCBHHHHHHHTTSSEECCCC
T ss_pred --eeEEEECCEECCC-CcchHHHHHHHHHHHhcCCEEEEEEEEEc-CCceEEEEEEeCCCCccHHHHHHHCCCccccccc
Confidence 9999999999987 78999999999999999999999999998 899 9999998 478999999999999995211
Q ss_pred CCCCCCChHHHHHHHHHHHhcccccccccc
Q 002945 716 GSDRIPDSHLLEQAEKSAKSQKLKIWENYV 745 (863)
Q Consensus 716 ~~~~~~~~~~l~~aE~~Ak~~r~GiW~~~~ 745 (863)
..........|.++|++||++|+|||+.++
T Consensus 189 ~~~~~~~~~~~~~~e~~Ar~~r~GlW~~gd 218 (218)
T 2wac_A 189 ERKLKELVDQYKAAQEAARVAHLAIWKYGD 218 (218)
T ss_dssp CGGGHHHHHHHHHHHHHHHHTTCGGGTTC-
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCcccCC
Confidence 000011235799999999999999998764
No 8
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=2.7e-15 Score=155.52 Aligned_cols=110 Identities=26% Similarity=0.393 Sum_probs=94.1
Q ss_pred cccccccc--cCCCeEEEEEEeCCceeEEeCCCccCCCCCCCCCCCceEEeeeccccCCCCCCCcHHHHHHHHHHhcccC
Q 002945 739 KIWENYVE--SVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNS 816 (863)
Q Consensus 739 GiW~~~~~--~~~~~~~V~fIDyGn~e~V~~s~LR~L~~~~~~lPpqA~~c~LA~vk~p~~~~~w~~eA~~~f~~~ll~~ 816 (863)
|.|-.... +.+..+.|+||||||++.|+.++||+||++|..+|+||++|+|++|++|. +..|+.+|.++|+++ +.
T Consensus 66 ~~wyRa~V~~v~~~~~~V~~vDyG~~~~v~~~~l~~l~~~~~~~p~~a~~~~Lagv~~p~-~~~w~~eA~~~l~~l--v~ 142 (218)
T 2wac_A 66 NQWYRAKVERVQGSNATVLYIDYGNKETLPTNRLAALPPAFSSEKPYATEYALALVALPT-DNEDKEEALRAFSED--VL 142 (218)
T ss_dssp CCEEEEEEEEEETTEEEEEETTTCCEEEEEGGGEEECCGGGSSSCCSEEEEEETTEECCS-SHHHHHHHHHHHHHH--HB
T ss_pred CeEEEEEEEEecCCeEEEEEEecCCeEEEchHHcccCChhhccCCcceeEEEECCEECCC-CcchHHHHHHHHHHH--hc
Confidence 44543332 33478999999999999999999999999999999999999999999985 567999999999999 46
Q ss_pred CCEEEEEEEEEcCCCCcccCCCCCce-EEEEEEecCCCCchhHhhhc
Q 002945 817 SNEFRALVEERDSSGGKLKGQGTGTL-LHVTLVAVDAEISINTLMVQ 862 (863)
Q Consensus 817 ~k~l~a~V~~~~~~g~~~~~~~~~~~-~~v~L~d~~~~~sIN~~Lv~ 862 (863)
|+.+.++|.+++ . +. ++|+|+++++..+||+.||+
T Consensus 143 ~k~v~~~v~~~d-~----------g~~~~V~L~~~~~~~~in~~Lv~ 178 (218)
T 2wac_A 143 NHKVQLNVELKV-T----------GSPNLATLRDPTTKVDFGKQLVA 178 (218)
T ss_dssp TCEEEEEEEECC-T----------TSCEEEEEECTTTCCBHHHHHHH
T ss_pred CCEEEEEEEEEc-C----------CceEEEEEEeCCCCccHHHHHHH
Confidence 899999998866 2 23 78999987667899999986
No 9
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=99.51 E-value=1.3e-14 Score=144.84 Aligned_cols=101 Identities=19% Similarity=0.282 Sum_probs=84.0
Q ss_pred cccccccc---cCCCeEEEEEEeCCceeEEeCCCccCCCCCCCCCCCceEEeeeccccCCCCCCCcHHHHHHHHHHhccc
Q 002945 739 KIWENYVE---SVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYN 815 (863)
Q Consensus 739 GiW~~~~~---~~~~~~~V~fIDyGn~e~V~~s~LR~L~~~~~~lPpqA~~c~LA~vk~p~~~~~w~~eA~~~f~~~ll~ 815 (863)
|.|-.... ..++.+.|+||||||++.+ ++||+||++|.++|+||++|+|++++||. ++.+|.++|+++ +
T Consensus 62 ~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v--~~lr~l~~~f~~lP~qA~~c~L~~v~~~~----~~~ea~~~f~~l--~ 133 (169)
T 3ntk_A 62 EVFYRAQIRKVLDDGKCEVHFIDFGNNAVT--QQFRQLPEELAKPARYSRHCELDASTISK----CDAALLQSFIDT--R 133 (169)
T ss_dssp TEEEEEEEEEECSTTCEEEEETTTTEEEEE--SCEECCCHHHHSSCCSSEEEEECGGGSCH----HHHHHHHHHHHT--T
T ss_pred CcEEEEEEEEECCCCEEEEEEEecCCeEEh--hhhhccCHHHhhCCceeEEEEECCcCCCC----ChHHHHHHHHHH--h
Confidence 44544433 2345799999999999994 89999999999999999999999999883 289999999999 5
Q ss_pred CCCEEEEEEEEEcCCCCcccCCCCCceEE-EEEEecCCCCchhHhh
Q 002945 816 SSNEFRALVEERDSSGGKLKGQGTGTLLH-VTLVAVDAEISINTLM 860 (863)
Q Consensus 816 ~~k~l~a~V~~~~~~g~~~~~~~~~~~~~-v~L~d~~~~~sIN~~L 860 (863)
.|++|.++|.++.. +..| |+|+++ +.+||+.|
T Consensus 134 ~~k~l~~~V~~~~~-----------~~~~~V~L~~~--~~~in~~L 166 (169)
T 3ntk_A 134 FSETFQVEILATKG-----------TGTHVVRLFYQ--SKNISEKL 166 (169)
T ss_dssp TTSEEEEEEEEECT-----------TSCEEEEEEET--TEEHHHHC
T ss_pred CCCeEEEEEEEecC-----------CCCEEEEEEEC--CCCHHHHh
Confidence 79999999998652 3456 999987 45999987
No 10
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=99.49 E-value=1e-16 Score=169.53 Aligned_cols=155 Identities=19% Similarity=0.247 Sum_probs=33.4
Q ss_pred ccHHHHHHHHHHHHHHhcCCCcCCCCCCCceEEEeCCCCccccccccccccccCCccceEEEEEecCCEEEE-EecCCCc
Q 002945 562 RSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKV-LIPKETC 640 (863)
Q Consensus 562 ~s~~YraLv~ae~~A~~~~~Gi~s~k~~~~~~~~D~~~gn~~~ak~~l~~~~r~~~l~~~Ve~V~dG~~~~v-~lp~~~~ 640 (863)
|+.|||+.|.. +.+.... .+.|+|| ||.+. ++.. ++++|+. .|.. .+|.+
T Consensus 78 d~~wyRa~V~~----------~~~~~~~-~V~~vDy--Gn~~~----v~~~-~lr~l~~---------~~~~~~lp~~-- 128 (246)
T 2hqx_A 78 DGEWYRARVEK----------VESPAKI-HVFYIDY--GNREV----LPST-RLGTLSP---------AFSTRVLPAQ-- 128 (246)
T ss_dssp TSCEEEEEEEE----------EEETTEE-EEEETTT--CCEEE----ECGG-GEECCCG---------GGSTTTSCCC--
T ss_pred CCCEEEEEEEE----------EcCCCeE-EEEEEeC--CCeEE----EeHH-HhhcCCH---------hHcCCCCchh--
Confidence 57899999884 2222222 3579999 89875 7765 7888875 2321 25877
Q ss_pred eEEEEEeeecCCCCCchhHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEe--CCccHHHHHHHcCCEEEeeecCCC
Q 002945 641 SIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWE--SRTNVAVILLEAGLAKLQTSFGSD 718 (863)
Q Consensus 641 ~i~~~LaGI~~P~~~e~~~~EA~~~l~~~ll~r~V~v~v~~~D~~G~~~g~l~~--~~~ni~~~Lv~~GlA~v~~~~~~~ 718 (863)
++.|+|+||++|. ..+|+.+|..++.++++++.|.+++...|. |+.++.|+. ++.+||..||++|||++++.+...
T Consensus 129 a~~~~L~~v~~p~-~~~~~~eA~~~l~~lv~~k~v~~~v~~~d~-g~~~v~L~~~~~~~~In~~LV~~GlA~~~~~~~~~ 206 (246)
T 2hqx_A 129 ATEYAFAFIQVPQ-DDDARTDAVDSVVRDIQNTQCLLNVEHLSA-GCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQ 206 (246)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred hhhhhhhceecCC-CccchHHHHHHHHHHhcCCEEEEEEEEecC-CeEEEEEEeCCCCccHHHHHHHCCCEEecccchhh
Confidence 8999999999987 467999999999999999999999998874 888888987 468999999999999997544211
Q ss_pred CCCChHHHHHHHHHHHhcccccccccccc
Q 002945 719 RIPDSHLLEQAEKSAKSQKLKIWENYVES 747 (863)
Q Consensus 719 ~~~~~~~l~~aE~~Ak~~r~GiW~~~~~~ 747 (863)
.......|.++|+.||++|+|||+..++.
T Consensus 207 ~~~~~~~~~~~e~~Ar~~r~GlW~~gd~~ 235 (246)
T 2hqx_A 207 FQKVITEYLNAQESAKSARLNLWRYGDFR 235 (246)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHhccCcccCCCCC
Confidence 12234579999999999999999988764
No 11
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=99.41 E-value=4.4e-14 Score=149.36 Aligned_cols=100 Identities=29% Similarity=0.487 Sum_probs=34.1
Q ss_pred CCeEEEEEEeCCceeEEeCCCccCCCCCCC--CCCCceEEeeeccccCCCCCCCcHHHHHHHHHHhcccCCCEEEEEEEE
Q 002945 749 NDKFEVFYIDYGNQELVPYNKLRPIDPSLS--STPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEE 826 (863)
Q Consensus 749 ~~~~~V~fIDyGn~e~V~~s~LR~L~~~~~--~lPpqA~~c~LA~vk~p~~~~~w~~eA~~~f~~~ll~~~k~l~a~V~~ 826 (863)
+..+.|+||||||++.|+.++||+||++|. .+|+||++|+|++|++|. ..+|..+|..+|.+++ .|+.+.++|+.
T Consensus 92 ~~~~~V~~vDyGn~~~v~~~~lr~l~~~~~~~~lp~~a~~~~L~~v~~p~-~~~~~~eA~~~l~~lv--~~k~v~~~v~~ 168 (246)
T 2hqx_A 92 PAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQ-DDDARTDAVDSVVRDI--QNTQCLLNVEH 168 (246)
T ss_dssp TTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCC------------------------------------------
T ss_pred CCeEEEEEEeCCCeEEEeHHHhhcCCHhHcCCCCchhhhhhhhhceecCC-CccchHHHHHHHHHHh--cCCEEEEEEEE
Confidence 468999999999999999999999999998 789999999999999985 3579999999999984 58999999987
Q ss_pred EcCCCCcccCCCCCceEEEEEEecCCCCchhHhhhc
Q 002945 827 RDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQ 862 (863)
Q Consensus 827 ~~~~g~~~~~~~~~~~~~v~L~d~~~~~sIN~~Lv~ 862 (863)
.+. +..+|+|++.+...+||..||+
T Consensus 169 ~d~-----------g~~~v~L~~~~~~~~In~~LV~ 193 (246)
T 2hqx_A 169 LSA-----------GCPHVTLQFADSKGDVGLGLVK 193 (246)
T ss_dssp ------------------------------------
T ss_pred ecC-----------CeEEEEEEeCCCCccHHHHHHH
Confidence 663 2366788876557899999986
No 12
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=98.95 E-value=1.4e-10 Score=107.23 Aligned_cols=48 Identities=29% Similarity=0.555 Sum_probs=45.8
Q ss_pred CCeEEEEEEeCCceeEEeCCCccCCCCCCCCCCCceEEeeeccccCCC
Q 002945 749 NDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPA 796 (863)
Q Consensus 749 ~~~~~V~fIDyGn~e~V~~s~LR~L~~~~~~lPpqA~~c~LA~vk~p~ 796 (863)
++.+.|+||||||+++|+.++||+||++|..+|+||++|+|++|+|..
T Consensus 60 ~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~lP~qA~~c~L~~v~p~~ 107 (110)
T 2diq_A 60 NGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIASGP 107 (110)
T ss_dssp SSCEEEEETTTCCEEEECGGGCEECCHHHHSSCCSSCCSCSSCSCCSC
T ss_pred CCeEEEEEEeCCCeEEEehHHhhcCcHHHhCCCcceEEEEECCeEECC
Confidence 468999999999999999999999999999999999999999999874
No 13
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=98.81 E-value=4.2e-10 Score=117.36 Aligned_cols=121 Identities=17% Similarity=0.262 Sum_probs=94.4
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCcCCCCCCCceEEEeCCCCccccccccccccccCCccceEEEEEecCCEEEEEecCC
Q 002945 559 FEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKE 638 (863)
Q Consensus 559 ~~~~s~~YraLv~ae~~A~~~~~Gi~s~k~~~~~~~~D~~~gn~~~ak~~l~~~~r~~~l~~~Ve~V~dG~~~~v~lp~~ 638 (863)
+++|+.|||+.|.. +.+.... .+.|+|| ||.+. ++.. ++++|+. .| ..+|.+
T Consensus 76 ~~~d~~WyRa~V~~----------~~~~~~~-~V~~vDy--Gn~~~----v~~~-~l~~l~~---------~f-~~lP~q 127 (226)
T 4b9x_A 76 FSGDGNWYRALVKE----------ILPSGNV-KVHFVDY--GNVEE----VTTD-QLQAILP---------QF-LLLPFQ 127 (226)
T ss_dssp ETTTTEEEEEEEEE----------ECSSSEE-EEECTTT--CCEEE----EEGG-GEECCCG---------GG-SSSCBC
T ss_pred ECCCCeEEEEEEEE----------ECCCCeE-EEEEEec--CCEEE----EEHH-HhccChH---------HH-cccccc
Confidence 45678999998873 2222122 3579999 89875 7766 8888885 23 247887
Q ss_pred CceEEEEEeeecCCCCCchhHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEeC----CccHHHHHHHcCCEEEe
Q 002945 639 TCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES----RTNVAVILLEAGLAKLQ 712 (863)
Q Consensus 639 ~~~i~~~LaGI~~P~~~e~~~~EA~~~l~~~ll~r~V~v~v~~~D~~G~~~g~l~~~----~~ni~~~Lv~~GlA~v~ 712 (863)
+++|+|+||.++ +..|+.+|..+|++++.++.+.++|.+.+. +.+.+.|+.. +.+|+..|+++|||...
T Consensus 128 --A~~c~L~~v~p~--~~~w~~ea~~~f~~l~~~k~l~~~V~~~~~-~~~~V~L~d~~~~~~~~I~~~Lv~~gla~~~ 200 (226)
T 4b9x_A 128 --GMQCWLVDIQPP--NKHWTKEATARFQACVVGLKLQARVVEITA-NGVGVELTDLSTPYPKIISDVLIREQLVLRC 200 (226)
T ss_dssp --CEEEEESSEECS--SSSCCHHHHHHHHHHHTTCCEEEEEEEECS-SCEEEEEEECSSSSCEEHHHHHHHTTSSEEC
T ss_pred --eEEEEEecEECC--CCCCCHHHHHHHHHHHCCCeEEEEEEEEeC-CeEEEEEEECCCCCCccHHHHHHHCCCcccc
Confidence 999999999954 567999999999999999999999999864 4467888873 46799999999999753
No 14
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=98.80 E-value=5.2e-10 Score=114.52 Aligned_cols=119 Identities=18% Similarity=0.269 Sum_probs=92.6
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCcCCCCCCCceEEEeCCCCccccccccccccccCCccceEEEEEecCCEEEEEecCC
Q 002945 559 FEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKE 638 (863)
Q Consensus 559 ~~~~s~~YraLv~ae~~A~~~~~Gi~s~k~~~~~~~~D~~~gn~~~ak~~l~~~~r~~~l~~~Ve~V~dG~~~~v~lp~~ 638 (863)
+++|+.|||+.|.. +.+.... .+.|+|| ||.+. ++.. ++++|+. .|. .+|.+
T Consensus 76 ~~~d~~wyRa~V~~----------~~~~~~~-~V~~vDy--G~~~~----v~~~-~l~~l~~---------~f~-~lP~q 127 (201)
T 4b9w_A 76 FSGDGNWYRALVKE----------ILPSGNV-KVHFVDY--GNVEE----VTTD-QLQAILP---------QFL-LLPFQ 127 (201)
T ss_dssp ETTTTEEEEEEEEE----------ECTTSCE-EEEETTT--CCEEE----ECGG-GEEECCG---------GGG-SSCBC
T ss_pred ECCCCeEEEEEEEE----------ECCCCeE-EEEEEcc--CCEEE----EEHH-HhccChH---------hHc-ccchh
Confidence 45678999998863 2222223 3589999 89875 7766 8888875 232 47887
Q ss_pred CceEEEEEeeecCCCCCchhHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEeC----CccHHHHHHHcCCEE
Q 002945 639 TCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES----RTNVAVILLEAGLAK 710 (863)
Q Consensus 639 ~~~i~~~LaGI~~P~~~e~~~~EA~~~l~~~ll~r~V~v~v~~~D~~G~~~g~l~~~----~~ni~~~Lv~~GlA~ 710 (863)
+++|+|+||.++ +..|+.+|..+|++++.++.+.++|.+.+. +.+.+.|+.. +.+|+..|+++|||.
T Consensus 128 --A~~c~L~~v~p~--~~~w~~ea~~~f~~l~~~k~l~~~V~~~~~-~~~~V~L~d~~~~~~~~I~~~Lv~~gLA~ 198 (201)
T 4b9w_A 128 --GMQCWLVDIQPP--NKHWTKEATARFQACVVGLKLQARVVEITA-NGVGVELTDLSTPYPKIISDVLIREQLVL 198 (201)
T ss_dssp --CEEEEESSEECS--SSSCCHHHHHHHHHHHTTCCEEEEEEEEET-TEEEEEEEECSSSSCEEHHHHHHHTTSSE
T ss_pred --hEEEEEcCEEcC--CCCCCHHHHHHHHHHHCCCEEEEEEEEEeC-CEEEEEEEECCCCCccchHHHHHHCcCee
Confidence 999999999954 567999999999999999999999998764 4567778763 467999999999996
No 15
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=98.68 E-value=4.6e-09 Score=94.23 Aligned_cols=41 Identities=27% Similarity=0.592 Sum_probs=37.9
Q ss_pred CCCeEEEEEEeCCceeEEeCCCccCCCCCCCCCCCceEEee
Q 002945 748 VNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCS 788 (863)
Q Consensus 748 ~~~~~~V~fIDyGn~e~V~~s~LR~L~~~~~~lPpqA~~c~ 788 (863)
.+..+.|+||||||+++|+.++||+||++|.++|+||++|+
T Consensus 54 ~~~~~~V~fvDyGn~e~v~~~~lr~l~~~f~~lP~qA~~Cs 94 (94)
T 3fdr_A 54 ENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECS 94 (94)
T ss_dssp TTSCEEEEETTTCCEEEECGGGCEECCGGGGCSCCCCCCC-
T ss_pred CCCeEEEEEEcCCCeEEEEHHHhhhcCHHHhcCCcceEEeC
Confidence 34689999999999999999999999999999999999996
No 16
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=98.32 E-value=3.5e-08 Score=98.18 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=83.8
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCcCCCCCCCceEEEeCCCCccccccccccccccCCccceEEEEEecCCEEEEEecCC
Q 002945 559 FEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKE 638 (863)
Q Consensus 559 ~~~~s~~YraLv~ae~~A~~~~~Gi~s~k~~~~~~~~D~~~gn~~~ak~~l~~~~r~~~l~~~Ve~V~dG~~~~v~lp~~ 638 (863)
+++|+.|||+.|.. +.+.+.. .+.|+|| ||.+. + .++++|+. .| ..+|.+
T Consensus 58 ~~~d~~wyRa~I~~----------~~~~~~~-~V~fvDy--Gn~~~----v---~~lr~l~~---------~f-~~lP~q 107 (169)
T 3ntk_A 58 FPEDEVFYRAQIRK----------VLDDGKC-EVHFIDF--GNNAV----T---QQFRQLPE---------EL-AKPARY 107 (169)
T ss_dssp ETTTTEEEEEEEEE----------ECSTTCE-EEEETTT--TEEEE----E---SCEECCCH---------HH-HSSCCS
T ss_pred ECCCCcEEEEEEEE----------ECCCCEE-EEEEEec--CCeEE----h---hhhhccCH---------HH-hhCCce
Confidence 45678999999883 3322222 3589999 89874 3 26788875 23 237887
Q ss_pred CceEEEEEeeecCCCCCchhHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEeCCccHHHHH
Q 002945 639 TCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVIL 703 (863)
Q Consensus 639 ~~~i~~~LaGI~~P~~~e~~~~EA~~~l~~~ll~r~V~v~v~~~D~~G~~~g~l~~~~~ni~~~L 703 (863)
+++|+|+||+.|.. ..+|..+|++++.++.+.++|......+.+.+.|+.++.+||+.|
T Consensus 108 --A~~c~L~~v~~~~~----~~ea~~~f~~l~~~k~l~~~V~~~~~~~~~~V~L~~~~~~in~~L 166 (169)
T 3ntk_A 108 --SRHCELDASTISKC----DAALLQSFIDTRFSETFQVEILATKGTGTHVVRLFYQSKNISEKL 166 (169)
T ss_dssp --SEEEEECGGGSCHH----HHHHHHHHHHTTTTSEEEEEEEEECTTSCEEEEEEETTEEHHHHC
T ss_pred --eEEEEECCcCCCCC----hHHHHHHHHHHhCCCeEEEEEEEecCCCCEEEEEEECCCCHHHHh
Confidence 89999999997642 899999999999999999999987433344499999999999987
No 17
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.99 E-value=1.3e-06 Score=75.35 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=34.8
Q ss_pred cCCCeEEEEEEeCCceeEEeCCCccCCCCCCCCCCCce
Q 002945 747 SVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLA 784 (863)
Q Consensus 747 ~~~~~~~V~fIDyGn~e~V~~s~LR~L~~~~~~lPpqA 784 (863)
..+++++|+|+||||+++|++++||||++.|..++.++
T Consensus 47 ~~~~~veVl~~DyGn~~~V~~~~LR~L~~~l~~~~~~~ 84 (85)
T 2eqk_A 47 VTDTLVEVLLYDVGVELVVNVDCLRKLEENLKTMGRLS 84 (85)
T ss_dssp CSSSEEEEECTTTCCEEEEETTTEEECCHHHHTCSSCC
T ss_pred cCCCeEEEEEEccCCEEEEEccccccCCHHHhhhhhcc
Confidence 46678999999999999999999999999999888875
No 18
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=97.54 E-value=3.5e-05 Score=62.68 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=25.9
Q ss_pred CCeEEEEEEeCCceeEEeCCCccCCCCC
Q 002945 749 NDKFEVFYIDYGNQELVPYNKLRPIDPS 776 (863)
Q Consensus 749 ~~~~~V~fIDyGn~e~V~~s~LR~L~~~ 776 (863)
...+.|+|+||||+++|++++|||||++
T Consensus 32 ~~~~~V~f~DYGn~e~v~~~~Lr~~~~~ 59 (59)
T 1mhn_A 32 RETCVVVYTGYGNREEQNLSDLLSPICE 59 (59)
T ss_dssp TTEEEEEETTTTEEEEEEGGGCBCTTCC
T ss_pred CCEEEEEEEcCCCEEEEcHHHeeCCCCC
Confidence 4789999999999999999999999863
No 19
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=97.46 E-value=4.5e-05 Score=65.69 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=28.2
Q ss_pred CCeEEEEEEeCCceeEEeCCCccCCCCCCCC
Q 002945 749 NDKFEVFYIDYGNQELVPYNKLRPIDPSLSS 779 (863)
Q Consensus 749 ~~~~~V~fIDyGn~e~V~~s~LR~L~~~~~~ 779 (863)
...+.|+||||||.++|++++||+||++|+.
T Consensus 38 ~~~~~V~fiDYGN~e~V~~~~Lr~l~~~ll~ 68 (78)
T 2d9t_A 38 GMTAVVKFTDYGNYEEVLLSNIKPVQTEAWV 68 (78)
T ss_dssp SSEEEEEETTTTEEEEEEGGGEEECCCCCCC
T ss_pred CCEEEEEEEcCCCeEEEcHHHeEeCCHHHhh
Confidence 4789999999999999999999999988753
No 20
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=97.23 E-value=0.00012 Score=64.32 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=24.9
Q ss_pred CCeEEEEEEeCCceeEEeCCCccCCCCCCCC
Q 002945 749 NDKFEVFYIDYGNQELVPYNKLRPIDPSLSS 779 (863)
Q Consensus 749 ~~~~~V~fIDyGn~e~V~~s~LR~L~~~~~~ 779 (863)
...+.|+||||||.++|++++||||++.|..
T Consensus 39 ~~~~~V~fiDYGN~E~V~~~~Lrp~~~~~~~ 69 (88)
T 1g5v_A 39 RETCVVVYTGYGNREEQNLSDLLSPICEVAN 69 (88)
T ss_dssp TTEEEEEETTTCCEEEEEGGGCBCCC-----
T ss_pred CCEEEEEEecCCCEEEEcHHHcccCChhhcc
Confidence 4789999999999999999999999998864
No 21
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=97.19 E-value=0.00014 Score=58.00 Aligned_cols=25 Identities=40% Similarity=0.592 Sum_probs=23.3
Q ss_pred CCeEEEEEEeCCceeEEeCCCccCC
Q 002945 749 NDKFEVFYIDYGNQELVPYNKLRPI 773 (863)
Q Consensus 749 ~~~~~V~fIDyGn~e~V~~s~LR~L 773 (863)
.+.+.|+|+||||+++|++++||||
T Consensus 30 ~~~~~V~fvDYGn~e~v~~~~lrpi 54 (54)
T 3s6w_A 30 GMTAVVKFIDYGNYEEVLLSNIKPI 54 (54)
T ss_dssp CSEEEEEETTTCCEEEEEGGGEECC
T ss_pred CCEEEEEEEccCCeEEEeHHHEEEC
Confidence 4679999999999999999999997
No 22
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=97.16 E-value=0.00015 Score=62.31 Aligned_cols=28 Identities=36% Similarity=0.543 Sum_probs=23.6
Q ss_pred CCeEEEEEEeCCceeEEeCCCccCCCCC
Q 002945 749 NDKFEVFYIDYGNQELVPYNKLRPIDPS 776 (863)
Q Consensus 749 ~~~~~V~fIDyGn~e~V~~s~LR~L~~~ 776 (863)
.+.+.|+||||||+++|++++||+||++
T Consensus 46 ~~~~~V~fvDYGN~e~V~~~~Lr~l~~~ 73 (77)
T 3pnw_C 46 GMTAVVKFIDYGNYEEVLLSNIKPIQTE 73 (77)
T ss_dssp SSEEEEEETTTCCEEEEEGGGEECC---
T ss_pred CCEEEEEEEcCCCeEEEeHHHeEECChh
Confidence 4679999999999999999999999865
No 23
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=97.10 E-value=0.00019 Score=59.31 Aligned_cols=27 Identities=30% Similarity=0.684 Sum_probs=25.0
Q ss_pred CCeEEEEEEeCCceeEEeCCCccCCCC
Q 002945 749 NDKFEVFYIDYGNQELVPYNKLRPIDP 775 (863)
Q Consensus 749 ~~~~~V~fIDyGn~e~V~~s~LR~L~~ 775 (863)
.+.+.|+|+||||+++|++++||||++
T Consensus 37 ~~~~~V~fvdYGn~e~V~~~~Lrpl~~ 63 (64)
T 4a4f_A 37 NGTAAITFAGYGNAEVTPLLNLKPVEE 63 (64)
T ss_dssp TTEEEEEETTTTEEEEEEGGGEECCSC
T ss_pred CCEEEEEEEecCCEEEEeHHHcEeCCC
Confidence 468999999999999999999999975
No 24
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.27 E-value=0.029 Score=47.53 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=25.9
Q ss_pred CCeEEEEEEeCCceeEEeCCCccCCCCCCC
Q 002945 749 NDKFEVFYIDYGNQELVPYNKLRPIDPSLS 778 (863)
Q Consensus 749 ~~~~~V~fIDyGn~e~V~~s~LR~L~~~~~ 778 (863)
+..+.|+|+|| |.++|+.++|||||+++.
T Consensus 36 ~~~~~V~f~Dy-n~e~v~~~~lrplp~~~k 64 (74)
T 2equ_A 36 EGTFTVQFYDG-VIRCLKRMHIKAMPEDAK 64 (74)
T ss_dssp TSSEEEEETTS-CEEEECGGGEECCCGGGT
T ss_pred CCEEEEEEecC-CeEEecHHHCeeCChhHh
Confidence 36799999999 999999999999998643
No 25
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=91.71 E-value=0.023 Score=48.87 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=24.5
Q ss_pred CCeEEEEEEeCCceeEEeCCCccCCCCC
Q 002945 749 NDKFEVFYIDYGNQELVPYNKLRPIDPS 776 (863)
Q Consensus 749 ~~~~~V~fIDyGn~e~V~~s~LR~L~~~ 776 (863)
+..+.|+|+| ||.++|+.++|||||..
T Consensus 33 ~~~y~V~F~D-Gn~E~V~~s~LrPl~~~ 59 (81)
T 2ldm_A 33 DGTYTVKFYD-GVVQTVKHIHVKAFSKD 59 (81)
Confidence 3579999999 99999999999999865
No 26
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=84.74 E-value=0.48 Score=39.17 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=23.9
Q ss_pred CCCeEEEEEEeCCceeEEeCCCccCCCCC
Q 002945 748 VNDKFEVFYIDYGNQELVPYNKLRPIDPS 776 (863)
Q Consensus 748 ~~~~~~V~fIDyGn~e~V~~s~LR~L~~~ 776 (863)
.+..++|.|.| |++++|..++|+|+|.+
T Consensus 32 ~~~~Y~V~F~d-G~~etvk~~~ikp~~~~ 59 (67)
T 3p8d_A 32 KDGTYTVKFYD-GVVQTVKHIHVKAFSKD 59 (67)
T ss_dssp TTSEEEEEETT-SCEEEEEGGGEEECC--
T ss_pred CCCeEEEEEeC-CceEEEeHHHcccCCcc
Confidence 34689999999 99999999999999875
No 27
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=84.67 E-value=0.11 Score=47.21 Aligned_cols=72 Identities=11% Similarity=0.023 Sum_probs=55.4
Q ss_pred CCCCCccchhhHHhHHHHHhhccC----cEEEE-EEeeeecccccccccccCCCCCCCCCCCCCcccccccCCCCCC
Q 002945 424 PRKDEKPAAYAREAREFLRTRLIG----RQVNV-QMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGE 495 (863)
Q Consensus 424 ~~~~~~~e~~~~earEflR~~~iG----k~V~v-~vdy~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 495 (863)
+..+..+.....+...|+|.+++. .++.| .|||.+...+..+-+||+.+.....+-++..|+|+++|+...+
T Consensus 33 ~~~G~~c~a~~~~d~~wyRA~V~~~~~~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~lP~qA~~c~L~~v~p~~~s 109 (110)
T 2diq_A 33 VHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIASGPSS 109 (110)
T ss_dssp CCTTCEEEECCTTTCSCEEEEECCCCSSSCEEEEETTTCCEEEECGGGCEECCHHHHSSCCSSCCSCSSCSCCSCCC
T ss_pred CCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEeCCCeEEEehHHhhcCcHHHhCCCcceEEEEECCeEECCCC
Confidence 334444444434567799999864 46666 7999999988999999999877666889999999999987654
No 28
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=83.17 E-value=0.024 Score=45.77 Aligned_cols=45 Identities=13% Similarity=0.051 Sum_probs=30.6
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCcCCCCCCCceEEEeCCCCccccccccccccccCCccce
Q 002945 559 FEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPA 620 (863)
Q Consensus 559 ~~~~s~~YraLv~ae~~A~~~~~Gi~s~k~~~~~~~~D~~~gn~~~ak~~l~~~~r~~~l~~ 620 (863)
+++|+.|||+.|.. +......-.+.|+|| ||.+. ++.. ++++++.
T Consensus 14 ~s~Dg~wYrA~I~~----------i~~~~~~~~V~f~DY--Gn~e~----v~~~-~Lr~~~~ 58 (59)
T 1mhn_A 14 WSEDGCIYPATIAS----------IDFKRETCVVVYTGY--GNREE----QNLS-DLLSPIC 58 (59)
T ss_dssp CTTTSCEEEEEEEE----------EETTTTEEEEEETTT--TEEEE----EEGG-GCBCTTC
T ss_pred ECCCCCEEEEEEEE----------EcCCCCEEEEEEEcC--CCEEE----EcHH-HeeCCCC
Confidence 56778999999984 221111224589999 89875 7766 7788763
No 29
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=82.92 E-value=0.02 Score=45.27 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=27.6
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCcCCCCCCCceEEEeCCCCccccccccccccccCCcc
Q 002945 559 FEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRI 618 (863)
Q Consensus 559 ~~~~s~~YraLv~ae~~A~~~~~Gi~s~k~~~~~~~~D~~~gn~~~ak~~l~~~~r~~~l 618 (863)
+++|+.|||+.|.. +........+.|+|| ||.+. ++.. .+|+|
T Consensus 12 ~s~Dg~wYrA~I~~----------i~~~~~~~~V~fvDY--Gn~e~----v~~~-~lrpi 54 (54)
T 3s6w_A 12 YWEDNKFYRAEVEA----------LHSSGMTAVVKFIDY--GNYEE----VLLS-NIKPI 54 (54)
T ss_dssp ETTTTEEEEEEEEE----------C--CCSEEEEEETTT--CCEEE----EEGG-GEECC
T ss_pred ECCCCCEEEEEEEE----------EeCCCCEEEEEEEcc--CCeEE----EeHH-HEEEC
Confidence 56788999999984 221212223589999 89875 6654 55554
No 30
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=82.78 E-value=0.022 Score=46.84 Aligned_cols=44 Identities=11% Similarity=0.265 Sum_probs=30.6
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCcCCCCCCCceEEEeCCCCccccccccccccccCCccc
Q 002945 559 FEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIP 619 (863)
Q Consensus 559 ~~~~s~~YraLv~ae~~A~~~~~Gi~s~k~~~~~~~~D~~~gn~~~ak~~l~~~~r~~~l~ 619 (863)
+++|+.|||+.|.. +.+.+..-.+.|+|| ||.+. ++.. ++++|+
T Consensus 19 ~s~Dg~wYrA~I~~----------v~~~~~~~~V~fvdY--Gn~e~----V~~~-~Lrpl~ 62 (64)
T 4a4f_A 19 WSEDGQCYEAEIEE----------IDEENGTAAITFAGY--GNAEV----TPLL-NLKPVE 62 (64)
T ss_dssp CTTTSSEEEEEEEE----------EETTTTEEEEEETTT--TEEEE----EEGG-GEECCS
T ss_pred ECCCCCEEEEEEEE----------EcCCCCEEEEEEEec--CCEEE----EeHH-HcEeCC
Confidence 57789999999984 333222224589999 89875 7755 777765
No 31
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.22 E-value=0.012 Score=50.87 Aligned_cols=53 Identities=6% Similarity=0.066 Sum_probs=37.6
Q ss_pred CCCcchhHHHHhcccceeeecCCcccccHHHHHHHHHHHHHHhcCCCcCCCCCCCceEEEeCCCCccccccccccccccC
Q 002945 536 PAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRS 615 (863)
Q Consensus 536 ~~g~nvae~lv~~G~a~v~~~r~~~~~s~~YraLv~ae~~A~~~~~Gi~s~k~~~~~~~~D~~~gn~~~ak~~l~~~~r~ 615 (863)
+.|..||.. |+++++|||+.|.. +.+.+... |.++|| ||.+. +|+. ++
T Consensus 23 k~g~~vaak--------------~~d~n~WyRakV~~----------v~~~~~ve-Vl~~Dy--Gn~~~----V~~~-~L 70 (85)
T 2eqk_A 23 ENDMHCAVK--------------IQDKNQWRRGQIIR----------MVTDTLVE-VLLYDV--GVELV----VNVD-CL 70 (85)
T ss_dssp CSSCEEEEE--------------CSSSCCEEEEEEEE----------ECSSSEEE-EECTTT--CCEEE----EETT-TE
T ss_pred cCCCEEEEE--------------eCCCCeEEEEEEEE----------ecCCCeEE-EEEEcc--CCEEE----EEcc-cc
Confidence 456777744 67778999999885 33333333 479999 89875 8876 88
Q ss_pred Cccce
Q 002945 616 RRIPA 620 (863)
Q Consensus 616 ~~l~~ 620 (863)
|+|+.
T Consensus 71 R~L~~ 75 (85)
T 2eqk_A 71 RKLEE 75 (85)
T ss_dssp EECCH
T ss_pred ccCCH
Confidence 88864
No 32
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=80.46 E-value=0.85 Score=39.37 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=24.0
Q ss_pred CCCeEEEEEEeCCceeEEeCCCccCCCCC
Q 002945 748 VNDKFEVFYIDYGNQELVPYNKLRPIDPS 776 (863)
Q Consensus 748 ~~~~~~V~fIDyGn~e~V~~s~LR~L~~~ 776 (863)
.+..++|.|-| |++++|...+|+|+|.+
T Consensus 47 ~~~~YtV~F~D-G~~etvk~~~IKp~~~~ 74 (85)
T 3qii_A 47 KDGTYTVKFYD-GVVQTVKHIHVKAFSKD 74 (85)
T ss_dssp TTSEEEEEETT-SCEEEEEGGGEEECC--
T ss_pred CCCeEEEEEeC-CCeEEecHHHcccCChh
Confidence 44689999999 99999999999999875
No 33
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=80.32 E-value=0.034 Score=47.60 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=30.9
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCcCCCCCCCceEEEeCCCCccccccccccccccCCccce
Q 002945 559 FEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPA 620 (863)
Q Consensus 559 ~~~~s~~YraLv~ae~~A~~~~~Gi~s~k~~~~~~~~D~~~gn~~~ak~~l~~~~r~~~l~~ 620 (863)
+++|+.|||+.|.. +......-.+.|+|| ||.+. ++.. .+++|+.
T Consensus 20 ~s~Dg~wYRA~I~~----------i~~~~~~~~V~fiDY--GN~e~----V~~~-~Lr~l~~ 64 (78)
T 2d9t_A 20 YWEDNKFYRAEVEA----------LHSSGMTAVVKFTDY--GNYEE----VLLS-NIKPVQT 64 (78)
T ss_dssp CTTTCCEEEEEEEE----------ECSSSSEEEEEETTT--TEEEE----EEGG-GEEECCC
T ss_pred ECCCCCEEEEEEEE----------EeCCCCEEEEEEEcC--CCeEE----EcHH-HeEeCCH
Confidence 56778999999984 332112224589999 89875 7765 7777765
No 34
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=80.22 E-value=0.033 Score=47.56 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=29.8
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCcCCCCCCCceEEEeCCCCccccccccccccccCCccce
Q 002945 559 FEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPA 620 (863)
Q Consensus 559 ~~~~s~~YraLv~ae~~A~~~~~Gi~s~k~~~~~~~~D~~~gn~~~ak~~l~~~~r~~~l~~ 620 (863)
+++|+.|||+.|.. +........+.|+|| ||.+. ++.. ++++|+.
T Consensus 28 ys~Dg~wYRA~I~~----------i~~~~~~~~V~fvDY--GN~e~----V~~~-~Lr~l~~ 72 (77)
T 3pnw_C 28 YWEDNKFYRAEVEA----------LHSSGMTAVVKFIDY--GNYEE----VLLS-NIKPIQT 72 (77)
T ss_dssp ETTTTEEEEEEEEE----------ECTTSSEEEEEETTT--CCEEE----EEGG-GEECC--
T ss_pred ECCCCCEEEEEEEE----------EeCCCCEEEEEEEcC--CCeEE----EeHH-HeEECCh
Confidence 56789999999983 322211223589999 89775 7765 7787764
No 35
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=79.13 E-value=0.049 Score=47.68 Aligned_cols=45 Identities=13% Similarity=0.051 Sum_probs=31.7
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCcCCCCCCCceEEEeCCCCccccccccccccccCCccce
Q 002945 559 FEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPA 620 (863)
Q Consensus 559 ~~~~s~~YraLv~ae~~A~~~~~Gi~s~k~~~~~~~~D~~~gn~~~ak~~l~~~~r~~~l~~ 620 (863)
+++|+.|||+.|.. +......-.|.|+|| ||.+. ++.. ++++++.
T Consensus 21 ys~Dg~wYrA~I~~----------i~~~~~~~~V~fiDY--GN~E~----V~~~-~Lrp~~~ 65 (88)
T 1g5v_A 21 WSEDGCIYPATIAS----------IDFKRETCVVVYTGY--GNREE----QNLS-DLLSPIC 65 (88)
T ss_dssp CTTTCCEEEEEEEE----------EETTTTEEEEEETTT--CCEEE----EEGG-GCBCCC-
T ss_pred ECCCCCEEEEEEEE----------ecCCCCEEEEEEecC--CCEEE----EcHH-HcccCCh
Confidence 57789999999985 222111224589999 89885 7766 8899886
No 36
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=57.60 E-value=5.8 Score=32.28 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=25.1
Q ss_pred CCCeEEEEEEeCCceeEEeCCCccCCCCC
Q 002945 748 VNDKFEVFYIDYGNQELVPYNKLRPIDPS 776 (863)
Q Consensus 748 ~~~~~~V~fIDyGn~e~V~~s~LR~L~~~ 776 (863)
.+..+.|.|=| |+++++..++|||+|..
T Consensus 40 ~~~~Y~VkfKd-gT~e~L~~kDIKp~~~~ 67 (68)
T 2dig_A 40 TSQLYTVKYKD-GTELELKENDIKSGPSS 67 (68)
T ss_dssp TTTEEEEECTT-SCEEEEETTTEECCCCC
T ss_pred CCceEEEEecC-CCEEEechhccccCCCC
Confidence 46679999999 99999999999999863
No 37
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=51.01 E-value=1.8 Score=37.94 Aligned_cols=62 Identities=11% Similarity=0.033 Sum_probs=44.4
Q ss_pred CCCCCccchhhHHhHHHHHhhccC----cEEEE-EEeeeecccccccccccCCCCCCCCCCCCCccc
Q 002945 424 PRKDEKPAAYAREAREFLRTRLIG----RQVNV-QMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKG 485 (863)
Q Consensus 424 ~~~~~~~e~~~~earEflR~~~iG----k~V~v-~vdy~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 485 (863)
+..+..+.....+...|+|.++++ ..+.| .|||.+...+..+-+||+.+.....+.++..|+
T Consensus 28 ~~~G~~c~a~~~~d~~wyRA~I~~~~~~~~~~V~fvDyGn~e~v~~~~lr~l~~~f~~lP~qA~~Cs 94 (94)
T 3fdr_A 28 VHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECS 94 (94)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECTTSCEEEEETTTCCEEEECGGGCEECCGGGGCSCCCCCCC-
T ss_pred CCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEcCCCeEEEEHHHhhhcCHHHhcCCcceEEeC
Confidence 344445544445678899999853 36666 799999988888899999888776666666664
No 38
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=35.95 E-value=20 Score=29.05 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=23.2
Q ss_pred CCCeEEEEEEeCCceeEEeCCCccCC
Q 002945 748 VNDKFEVFYIDYGNQELVPYNKLRPI 773 (863)
Q Consensus 748 ~~~~~~V~fIDyGn~e~V~~s~LR~L 773 (863)
.+..+.|.|=| |+++++..++|||+
T Consensus 37 ~~~~Y~V~fKd-gT~e~L~~kDIkp~ 61 (66)
T 2l8d_A 37 ASHLYTVKYKD-GTELALKESDIRLQ 61 (66)
T ss_dssp TTTEEEEEETT-SCEEEEEGGGEECS
T ss_pred CCceEEEEecC-CCEEeechhccccc
Confidence 46779999999 99999999999998
Done!