Query 002950
Match_columns 863
No_of_seqs 454 out of 1932
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 14:01:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002950.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002950hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10314 putative acyltransfer 99.2 9.8E-11 2.1E-15 116.0 12.0 116 708-834 16-135 (153)
2 COG1246 ArgA N-acetylglutamate 99.1 6.9E-11 1.5E-15 116.6 6.9 91 745-839 38-129 (153)
3 KOG1244 Predicted transcriptio 99.1 2.1E-11 4.6E-16 127.8 2.0 94 507-649 223-331 (336)
4 PF13508 Acetyltransf_7: Acety 99.1 6.7E-10 1.4E-14 97.0 11.1 77 749-830 3-79 (79)
5 PF00583 Acetyltransf_1: Acety 99.1 9.6E-10 2.1E-14 95.4 10.1 74 755-829 2-83 (83)
6 KOG0956 PHD finger protein AF1 99.1 8.9E-11 1.9E-15 135.1 4.3 133 509-658 6-189 (900)
7 PF13673 Acetyltransf_10: Acet 99.0 2.9E-09 6.3E-14 98.1 10.4 74 749-828 44-117 (117)
8 KOG0383 Predicted helicase [Ge 98.9 7.5E-10 1.6E-14 131.4 4.5 143 525-704 1-151 (696)
9 PTZ00330 acetyltransferase; Pr 98.9 9E-09 2E-13 98.8 10.6 83 750-833 53-141 (147)
10 PRK10146 aminoalkylphosphonic 98.9 6.2E-09 1.4E-13 99.6 9.0 80 752-832 50-137 (144)
11 PLN02706 glucosamine 6-phospha 98.8 1.8E-08 4E-13 97.6 10.4 82 750-832 54-143 (150)
12 cd02169 Citrate_lyase_ligase C 98.8 1.1E-08 2.3E-13 112.3 9.5 73 754-832 11-83 (297)
13 PRK07757 acetyltransferase; Pr 98.8 1.5E-08 3.2E-13 98.5 9.4 82 753-837 45-126 (152)
14 PRK07922 N-acetylglutamate syn 98.8 1.9E-08 4.1E-13 101.2 9.9 79 752-833 48-127 (169)
15 PRK03624 putative acetyltransf 98.8 1.7E-08 3.6E-13 94.9 7.9 83 750-834 46-131 (140)
16 KOG1512 PHD Zn-finger protein 98.8 2.2E-09 4.7E-14 113.5 1.7 93 506-648 256-362 (381)
17 PF13527 Acetyltransf_9: Acety 98.8 5.8E-08 1.3E-12 91.2 11.0 112 708-831 9-127 (127)
18 PLN02825 amino-acid N-acetyltr 98.8 2.4E-08 5.1E-13 116.6 10.1 88 752-841 410-498 (515)
19 PF15446 zf-PHD-like: PHD/FYVE 98.8 9.6E-09 2.1E-13 102.1 5.7 108 510-628 1-143 (175)
20 TIGR00124 cit_ly_ligase [citra 98.7 2.6E-08 5.6E-13 110.8 7.9 82 748-835 30-111 (332)
21 TIGR01890 N-Ac-Glu-synth amino 98.7 5.5E-08 1.2E-12 111.7 10.2 84 753-838 326-410 (429)
22 COG2153 ElaA Predicted acyltra 98.7 4.6E-08 1E-12 95.5 7.6 84 753-837 53-140 (155)
23 PRK10975 TDP-fucosamine acetyl 98.7 1E-07 2.2E-12 97.2 10.0 84 749-833 102-188 (194)
24 TIGR02382 wecD_rffC TDP-D-fuco 98.6 1.1E-07 2.5E-12 96.9 9.9 80 753-833 103-185 (191)
25 TIGR01575 rimI ribosomal-prote 98.6 1.5E-07 3.1E-12 87.7 9.7 81 752-834 34-117 (131)
26 COG5141 PHD zinc finger-contai 98.6 1.1E-08 2.3E-13 114.7 1.5 124 506-635 191-344 (669)
27 PRK05279 N-acetylglutamate syn 98.6 1.3E-07 2.8E-12 108.9 10.5 85 752-838 337-422 (441)
28 PRK12308 bifunctional arginino 98.6 1.1E-07 2.5E-12 113.7 9.9 83 752-837 506-588 (614)
29 PRK09491 rimI ribosomal-protei 98.6 3.1E-07 6.7E-12 88.8 10.8 85 748-834 39-126 (146)
30 TIGR03827 GNAT_ablB putative b 98.6 2.3E-07 4.9E-12 99.9 9.7 86 748-834 157-246 (266)
31 KOG4323 Polycomb-like PHD Zn-f 98.5 5.6E-08 1.2E-12 110.5 4.6 135 505-658 80-233 (464)
32 PRK13688 hypothetical protein; 98.5 3.2E-07 6.9E-12 91.8 9.1 76 753-834 49-134 (156)
33 PRK10140 putative acetyltransf 98.5 5.6E-07 1.2E-11 87.5 10.3 85 749-835 51-143 (162)
34 PRK09831 putative acyltransfer 98.5 3.3E-07 7.2E-12 89.2 8.1 73 752-835 56-128 (147)
35 KOG4299 PHD Zn-finger protein 98.5 1.5E-07 3.2E-12 109.3 5.3 45 508-552 253-304 (613)
36 KOG0955 PHD finger protein BR1 98.4 1E-07 2.3E-12 117.4 3.7 54 503-556 214-272 (1051)
37 KOG3139 N-acetyltransferase [G 98.4 1.1E-06 2.4E-11 87.5 9.9 75 760-835 68-148 (165)
38 PHA00673 acetyltransferase dom 98.4 1.4E-06 2.9E-11 87.2 10.3 85 748-833 54-146 (154)
39 TIGR02406 ectoine_EctA L-2,4-d 98.4 1.4E-06 3.1E-11 86.4 9.2 83 750-833 40-128 (157)
40 KOG3396 Glucosamine-phosphate 98.3 1.3E-06 2.8E-11 84.6 8.0 84 749-833 53-144 (150)
41 TIGR03448 mycothiol_MshD mycot 98.3 2.8E-06 6.1E-11 91.6 11.3 81 750-833 47-128 (292)
42 PF08445 FR47: FR47-like prote 98.3 2.1E-06 4.5E-11 77.5 8.7 79 753-833 2-82 (86)
43 PF13420 Acetyltransf_4: Acety 98.3 3.8E-06 8.2E-11 81.5 10.8 83 749-833 50-139 (155)
44 TIGR03448 mycothiol_MshD mycot 98.3 2E-06 4.4E-11 92.7 9.7 76 757-833 208-288 (292)
45 KOG4443 Putative transcription 98.3 2.1E-07 4.5E-12 108.3 2.1 92 507-647 17-116 (694)
46 COG0456 RimI Acetyltransferase 98.3 1.9E-06 4.1E-11 85.2 8.2 76 759-835 72-156 (177)
47 KOG0383 Predicted helicase [Ge 98.3 2.6E-07 5.6E-12 110.3 2.1 165 505-710 44-249 (696)
48 PRK10514 putative acetyltransf 98.3 2.7E-06 5.8E-11 81.8 8.5 86 755-848 56-141 (145)
49 PHA01807 hypothetical protein 98.3 2.4E-06 5.3E-11 85.3 8.3 83 749-834 53-142 (153)
50 KOG4299 PHD Zn-finger protein 98.2 6.6E-07 1.4E-11 104.0 4.2 45 508-552 47-94 (613)
51 TIGR03103 trio_acet_GNAT GNAT- 98.2 3.9E-06 8.4E-11 99.5 10.5 85 748-833 122-217 (547)
52 PF13523 Acetyltransf_8: Acety 98.2 1.3E-05 2.9E-10 78.0 10.7 88 747-835 46-143 (152)
53 KOG0954 PHD finger protein [Ge 98.1 7E-07 1.5E-11 104.6 1.7 50 505-554 268-322 (893)
54 PRK01346 hypothetical protein; 98.1 7.3E-06 1.6E-10 93.2 9.9 81 751-834 49-137 (411)
55 PRK10562 putative acetyltransf 98.1 7.3E-06 1.6E-10 79.4 8.3 78 751-835 50-127 (145)
56 cd04301 NAT_SF N-Acyltransfera 98.1 1.4E-05 3E-10 63.4 7.9 61 752-812 2-64 (65)
57 PRK15130 spermidine N1-acetylt 98.1 1.7E-05 3.7E-10 79.9 10.0 83 750-834 58-146 (186)
58 TIGR01211 ELP3 histone acetylt 98.1 1.1E-05 2.4E-10 94.8 9.6 76 757-833 422-516 (522)
59 TIGR01686 FkbH FkbH-like domai 98.0 1.6E-05 3.4E-10 88.1 9.6 82 748-831 230-319 (320)
60 COG3393 Predicted acetyltransf 98.0 1.3E-05 2.8E-10 85.7 8.3 84 749-833 177-262 (268)
61 TIGR03585 PseH pseudaminic aci 98.0 3.4E-05 7.4E-10 74.8 10.5 81 752-835 54-140 (156)
62 smart00258 SAND SAND domain. 98.0 3.9E-06 8.5E-11 73.6 2.3 63 432-495 5-69 (73)
63 KOG1244 Predicted transcriptio 98.0 2.1E-06 4.5E-11 91.0 0.7 78 451-551 247-329 (336)
64 KOG3397 Acetyltransferases [Ge 97.9 2.1E-05 4.6E-10 79.1 6.5 85 751-837 57-145 (225)
65 PRK10809 ribosomal-protein-S5- 97.8 6.8E-05 1.5E-09 76.2 9.5 84 749-834 77-167 (194)
66 KOG0825 PHD Zn-finger protein 97.8 6.3E-06 1.4E-10 97.0 1.7 40 606-650 227-267 (1134)
67 KOG1473 Nucleosome remodeling 97.8 6.2E-06 1.3E-10 100.3 1.4 127 506-657 342-487 (1414)
68 COG3153 Predicted acetyltransf 97.8 6.6E-05 1.4E-09 76.4 8.6 83 751-837 48-135 (171)
69 PRK10151 ribosomal-protein-L7/ 97.8 0.00015 3.2E-09 72.7 10.6 81 752-834 70-156 (179)
70 PF13302 Acetyltransf_3: Acety 97.7 0.0002 4.3E-09 68.0 10.2 80 748-829 55-142 (142)
71 KOG1512 PHD Zn-finger protein 97.7 9.8E-06 2.1E-10 86.4 0.5 83 446-551 275-361 (381)
72 PF00628 PHD: PHD-finger; Int 97.7 1.8E-05 3.9E-10 64.2 1.5 42 510-551 1-49 (51)
73 PF13718 GNAT_acetyltr_2: GNAT 97.6 0.00028 6E-09 73.4 10.3 86 747-833 25-176 (196)
74 PF00628 PHD: PHD-finger; Int 97.6 1.8E-05 3.8E-10 64.3 0.6 41 604-647 9-49 (51)
75 smart00249 PHD PHD zinc finger 97.5 7.4E-05 1.6E-09 58.2 3.5 38 605-646 10-47 (47)
76 smart00249 PHD PHD zinc finger 97.5 6.1E-05 1.3E-09 58.7 2.8 41 510-550 1-47 (47)
77 PF01342 SAND: SAND domain; I 97.5 4.7E-06 1E-10 75.0 -4.7 62 432-494 13-77 (82)
78 COG1247 Sortase and related ac 97.5 0.00078 1.7E-08 68.6 10.5 108 745-858 48-164 (169)
79 KOG3216 Diamine acetyltransfer 97.5 0.00059 1.3E-08 67.9 9.3 88 745-833 50-146 (163)
80 KOG4443 Putative transcription 97.3 8.5E-05 1.8E-09 87.1 1.7 105 509-626 69-180 (694)
81 KOG1973 Chromatin remodeling p 96.9 0.00034 7.4E-09 76.4 1.5 37 605-648 228-267 (274)
82 KOG0825 PHD Zn-finger protein 96.9 0.00042 9.1E-09 82.3 2.0 46 507-552 214-265 (1134)
83 COG5034 TNG2 Chromatin remodel 96.8 0.00049 1.1E-08 73.1 1.6 37 605-648 230-269 (271)
84 KOG4144 Arylalkylamine N-acety 96.8 0.0011 2.5E-08 65.9 3.6 61 772-833 100-161 (190)
85 PF12568 DUF3749: Acetyltransf 96.7 0.0099 2.2E-07 57.8 9.5 80 749-833 40-125 (128)
86 COG1670 RimL Acetyltransferase 96.7 0.0097 2.1E-07 58.3 9.7 89 747-837 64-162 (187)
87 PF12746 GNAT_acetyltran: GNAT 96.7 0.0097 2.1E-07 64.8 10.2 77 755-833 171-247 (265)
88 COG3053 CitC Citrate lyase syn 96.7 0.0063 1.4E-07 66.3 8.6 78 750-833 37-115 (352)
89 KOG1973 Chromatin remodeling p 96.6 0.00079 1.7E-08 73.5 1.7 43 509-552 222-267 (274)
90 COG2388 Predicted acetyltransf 96.6 0.0069 1.5E-07 56.7 7.6 70 747-820 15-84 (99)
91 PF14542 Acetyltransf_CG: GCN5 96.6 0.0086 1.9E-07 53.4 7.8 66 753-821 3-68 (78)
92 COG0454 WecD Histone acetyltra 96.5 0.0029 6.3E-08 53.5 4.2 44 779-828 87-130 (156)
93 KOG2488 Acetyltransferase (GNA 96.5 0.0073 1.6E-07 62.2 7.2 84 749-833 93-182 (202)
94 PF08444 Gly_acyl_tr_C: Aralky 96.4 0.0064 1.4E-07 55.7 5.6 74 754-832 4-79 (89)
95 PF13831 PHD_2: PHD-finger; PD 96.4 0.00076 1.6E-08 51.7 -0.3 34 518-551 2-36 (36)
96 COG1444 Predicted P-loop ATPas 96.3 0.0043 9.4E-08 75.5 5.2 58 774-833 532-591 (758)
97 KOG3138 Predicted N-acetyltran 96.2 0.0048 1E-07 63.8 4.1 61 773-834 89-153 (187)
98 cd04718 BAH_plant_2 BAH, or Br 96.1 0.0027 5.9E-08 63.1 1.8 27 618-649 1-27 (148)
99 KOG0957 PHD finger protein [Ge 96.0 0.0047 1E-07 70.7 3.2 51 505-555 116-181 (707)
100 COG4552 Eis Predicted acetyltr 96.0 0.0094 2E-07 66.5 5.4 85 742-833 34-127 (389)
101 KOG0957 PHD finger protein [Ge 95.8 0.0044 9.5E-08 70.9 1.9 37 605-646 555-595 (707)
102 COG5034 TNG2 Chromatin remodel 95.7 0.0044 9.5E-08 66.0 1.6 44 507-551 220-268 (271)
103 KOG3235 Subunit of the major N 95.6 0.033 7.2E-07 56.0 7.1 82 752-833 44-135 (193)
104 TIGR03694 exosort_acyl putativ 95.5 0.12 2.6E-06 55.6 11.3 123 707-833 17-200 (241)
105 KOG3234 Acetyltransferase, (GN 95.2 0.05 1.1E-06 54.7 6.7 58 773-831 69-129 (173)
106 cd04718 BAH_plant_2 BAH, or Br 95.2 0.011 2.3E-07 59.0 2.0 24 529-552 1-26 (148)
107 KOG1245 Chromatin remodeling c 95.1 0.005 1.1E-07 79.8 -0.6 43 604-651 1118-1160(1404)
108 COG1243 ELP3 Histone acetyltra 94.5 0.027 5.9E-07 64.8 3.5 51 782-833 459-509 (515)
109 KOG0955 PHD finger protein BR1 94.5 0.025 5.4E-07 71.2 3.4 53 574-650 218-270 (1051)
110 KOG4323 Polycomb-like PHD Zn-f 94.0 0.018 4E-07 66.5 0.8 43 510-552 170-223 (464)
111 PF13480 Acetyltransf_6: Acety 93.8 0.5 1.1E-05 44.5 9.9 66 749-815 71-136 (142)
112 smart00258 SAND SAND domain. 93.6 0.072 1.6E-06 47.2 3.5 49 246-296 20-69 (73)
113 KOG0956 PHD finger protein AF1 93.6 0.033 7.2E-07 66.2 1.7 38 604-648 17-56 (900)
114 PF00765 Autoind_synth: Autoin 93.5 0.45 9.7E-06 49.2 9.7 92 738-831 34-153 (182)
115 PF06852 DUF1248: Protein of u 92.7 0.56 1.2E-05 48.6 9.0 82 750-833 48-137 (181)
116 KOG1245 Chromatin remodeling c 92.2 0.035 7.5E-07 72.4 -0.6 47 506-552 1106-1157(1404)
117 PRK13834 putative autoinducer 92.0 0.81 1.7E-05 48.2 9.3 120 708-833 17-167 (207)
118 KOG0954 PHD finger protein [Ge 91.4 0.097 2.1E-06 62.9 1.8 38 604-648 283-320 (893)
119 PF13831 PHD_2: PHD-finger; PD 91.1 0.052 1.1E-06 41.7 -0.5 33 607-646 2-35 (36)
120 COG5141 PHD zinc finger-contai 90.7 0.1 2.2E-06 60.1 1.2 35 605-646 206-240 (669)
121 COG3981 Predicted acetyltransf 90.6 0.47 1E-05 48.6 5.6 66 749-816 70-140 (174)
122 PF01342 SAND: SAND domain; I 89.9 0.14 3E-06 46.4 1.1 55 240-296 18-78 (82)
123 COG3818 Predicted acetyltransf 88.5 0.43 9.2E-06 46.9 3.3 61 777-838 88-153 (167)
124 cd04264 DUF619-NAGS DUF619 dom 86.9 1.3 2.7E-05 41.7 5.4 48 755-802 14-63 (99)
125 PF02474 NodA: Nodulation prot 85.7 1.2 2.6E-05 45.8 4.8 53 773-827 85-137 (196)
126 KOG4135 Predicted phosphogluco 82.5 2.4 5.2E-05 42.6 5.3 59 773-832 107-169 (185)
127 COG3916 LasI N-acyl-L-homoseri 80.0 9 0.0002 40.6 8.8 84 746-830 50-160 (209)
128 COG5628 Predicted acetyltransf 79.2 11 0.00024 36.9 8.3 84 751-839 39-130 (143)
129 cd04265 DUF619-NAGS-U DUF619 d 79.0 3.7 8E-05 38.6 5.1 49 755-803 15-64 (99)
130 KOG2535 RNA polymerase II elon 78.2 2.4 5.2E-05 47.6 4.2 51 783-834 497-548 (554)
131 PF00385 Chromo: Chromo (CHRro 77.7 0.71 1.5E-05 37.9 -0.0 34 686-719 19-52 (55)
132 TIGR03019 pepcterm_femAB FemAB 74.4 9.3 0.0002 42.6 7.6 81 751-832 197-280 (330)
133 KOG2752 Uncharacterized conser 73.6 3 6.6E-05 46.3 3.4 102 510-627 57-167 (345)
134 KOG1473 Nucleosome remodeling 72.9 2 4.4E-05 54.3 2.1 39 604-647 351-389 (1414)
135 PF14446 Prok-RING_1: Prokaryo 72.8 1.9 4E-05 36.3 1.2 30 508-537 5-38 (54)
136 PRK00756 acyltransferase NodA; 68.5 8 0.00017 39.7 4.8 53 772-826 84-136 (196)
137 PF07227 DUF1423: Protein of u 66.8 5.7 0.00012 46.3 3.9 64 577-657 130-203 (446)
138 PF13880 Acetyltransf_13: ESCO 66.7 4.4 9.5E-05 35.9 2.3 28 775-802 7-34 (70)
139 PF04377 ATE_C: Arginine-tRNA- 64.7 28 0.00061 34.3 7.7 64 748-812 38-101 (128)
140 PF13832 zf-HC5HC2H_2: PHD-zin 63.3 3.9 8.4E-05 38.3 1.5 24 606-629 65-90 (110)
141 KOG1081 Transcription factor N 63.3 6.5 0.00014 46.5 3.6 48 504-552 85-132 (463)
142 PF01853 MOZ_SAS: MOZ/SAS fami 62.4 29 0.00062 36.5 7.6 86 707-806 26-113 (188)
143 PF01233 NMT: Myristoyl-CoA:pr 62.2 33 0.00072 35.1 7.8 65 747-811 75-148 (162)
144 PF13444 Acetyltransf_5: Acety 60.9 17 0.00037 33.6 5.3 25 771-795 76-100 (101)
145 PF07897 DUF1675: Protein of u 60.1 5.6 0.00012 44.1 2.2 32 450-481 252-283 (284)
146 PF07897 DUF1675: Protein of u 59.6 11 0.00023 41.9 4.2 31 248-282 252-283 (284)
147 PRK14852 hypothetical protein; 59.3 26 0.00057 45.0 8.0 85 750-834 76-182 (989)
148 PF12861 zf-Apc11: Anaphase-pr 56.5 4.9 0.00011 36.9 0.8 33 519-552 46-79 (85)
149 PF12261 T_hemolysin: Thermost 53.2 23 0.00049 36.9 5.1 71 756-831 42-140 (179)
150 PLN03238 probable histone acet 50.5 33 0.00071 38.2 6.0 32 775-806 157-188 (290)
151 PRK01305 arginyl-tRNA-protein 49.5 81 0.0018 34.4 8.8 58 754-812 149-206 (240)
152 PF15446 zf-PHD-like: PHD/FYVE 48.5 11 0.00024 38.6 2.0 45 605-650 13-61 (175)
153 PF13832 zf-HC5HC2H_2: PHD-zin 46.8 9.4 0.0002 35.8 1.1 31 507-537 54-87 (110)
154 cd00024 CHROMO Chromatin organ 45.8 8.4 0.00018 31.1 0.5 23 686-708 20-42 (55)
155 KOG2747 Histone acetyltransfer 44.3 19 0.00042 41.6 3.3 25 776-800 263-287 (396)
156 KOG2036 Predicted P-loop ATPas 42.9 21 0.00046 43.9 3.4 30 774-803 615-644 (1011)
157 PF14446 Prok-RING_1: Prokaryo 42.2 15 0.00033 31.0 1.5 26 605-630 17-42 (54)
158 KOG3612 PHD Zn-finger protein 41.3 18 0.0004 43.1 2.5 47 506-552 58-107 (588)
159 PF13771 zf-HC5HC2H: PHD-like 40.9 13 0.00028 33.4 1.0 31 507-537 35-68 (90)
160 KOG4628 Predicted E3 ubiquitin 40.1 21 0.00047 40.7 2.8 43 509-552 230-275 (348)
161 PTZ00064 histone acetyltransfe 38.4 45 0.00098 39.7 5.0 32 775-806 386-417 (552)
162 smart00298 CHROMO Chromatin or 37.9 12 0.00026 30.0 0.3 32 686-718 18-49 (55)
163 PF13639 zf-RING_2: Ring finge 36.7 4.7 0.0001 31.6 -2.2 40 509-551 1-44 (44)
164 PLN03239 histone acetyltransfe 35.4 68 0.0015 36.7 5.7 32 775-806 215-246 (351)
165 COG2401 ABC-type ATPase fused 35.3 16 0.00034 42.8 0.8 63 769-832 237-307 (593)
166 PLN00104 MYST -like histone ac 35.1 39 0.00085 39.9 3.9 32 775-806 308-339 (450)
167 KOG1829 Uncharacterized conser 35.0 15 0.00033 44.4 0.7 39 603-653 525-563 (580)
168 PF13771 zf-HC5HC2H: PHD-like 34.2 21 0.00044 32.1 1.2 24 606-629 46-71 (90)
169 PF04958 AstA: Arginine N-succ 33.6 61 0.0013 37.1 5.0 82 749-831 59-186 (342)
170 PF13901 DUF4206: Domain of un 32.7 31 0.00068 36.3 2.5 38 507-551 151-196 (202)
171 TIGR03244 arg_catab_AstA argin 31.3 95 0.0021 35.5 6.0 50 747-796 53-140 (336)
172 PF11793 FANCL_C: FANCL C-term 30.7 27 0.00058 30.7 1.3 20 607-626 18-39 (70)
173 KOG2779 N-myristoyl transferas 30.3 78 0.0017 36.3 5.1 78 749-826 134-226 (421)
174 KOG1246 DNA-binding protein ju 30.1 35 0.00077 43.7 2.8 47 506-552 153-203 (904)
175 KOG1632 Uncharacterized PHD Zn 30.0 28 0.00061 39.7 1.7 47 608-656 74-120 (345)
176 TIGR03243 arg_catab_AOST argin 30.0 98 0.0021 35.4 5.8 50 747-796 53-140 (335)
177 TIGR03245 arg_AOST_alph argini 29.9 97 0.0021 35.4 5.8 50 747-796 54-141 (336)
178 KOG1701 Focal adhesion adaptor 29.8 40 0.00086 39.3 2.8 77 526-646 352-433 (468)
179 PRK10456 arginine succinyltran 28.9 99 0.0021 35.5 5.7 50 747-796 55-142 (344)
180 TIGR03827 GNAT_ablB putative b 28.5 77 0.0017 34.3 4.7 44 789-833 21-64 (266)
181 KOG1734 Predicted RING-contain 28.5 22 0.00048 39.1 0.5 49 503-551 219-277 (328)
182 COG5027 SAS2 Histone acetyltra 27.7 27 0.00059 39.7 1.0 75 707-797 208-286 (395)
183 PF09924 DUF2156: Uncharacteri 26.9 3.3E+02 0.0071 29.9 9.3 69 747-816 178-248 (299)
184 PF04216 FdhE: Protein involve 25.4 44 0.00096 36.9 2.2 27 505-531 169-208 (290)
185 PF13066 DUF3929: Protein of u 24.6 69 0.0015 27.1 2.6 30 283-312 4-33 (65)
186 PF10187 Nefa_Nip30_N: N-termi 24.2 61 0.0013 30.8 2.5 26 285-310 35-60 (102)
187 PF13901 DUF4206: Domain of un 23.9 56 0.0012 34.4 2.5 23 603-625 166-188 (202)
188 PF11793 FANCL_C: FANCL C-term 23.5 40 0.00086 29.6 1.1 29 509-537 3-39 (70)
189 PF05301 Mec-17: Touch recepto 23.4 68 0.0015 31.4 2.7 62 779-850 52-116 (120)
190 PF12678 zf-rbx1: RING-H2 zinc 22.6 25 0.00055 31.0 -0.3 26 524-551 48-73 (73)
191 KOG1246 DNA-binding protein ju 21.4 67 0.0014 41.3 2.9 37 607-649 168-204 (904)
192 KOG4628 Predicted E3 ubiquitin 20.8 45 0.00098 38.1 1.1 35 606-648 241-275 (348)
193 PF07943 PBP5_C: Penicillin-bi 20.4 1.2E+02 0.0025 27.0 3.5 27 757-783 62-88 (91)
No 1
>PRK10314 putative acyltransferase; Provisional
Probab=99.21 E-value=9.8e-11 Score=116.04 Aligned_cols=116 Identities=16% Similarity=0.150 Sum_probs=87.6
Q ss_pred hhhHHHHHHHhhccccccccCCCccccccccccCCCceecc-cEEEEEEeCCeEEEEEEEEEecC--eeEEEeeeeeecc
Q 002950 708 LLSSATAIFRECFDPIIAECGRDLIPVMVYGRNISGQEFGG-MYSVILTVKSVVVSAGLLRIFGR--EVAELPLVATCRE 784 (863)
Q Consensus 708 lLs~Al~I~~EcF~Pi~~~Sg~DlIp~Mvyg~~~~~~~~~G-fy~~vl~~~~~vV~aA~lri~g~--~~AEip~VAT~~~ 784 (863)
-+..|+.+=++-|- ...+.+ |. ++.+.|..+ -+-+++..++++||+|+++..+. ..++|.+|||+++
T Consensus 16 ~~~~~~~lR~~VF~---~eq~~~------~~-e~D~~d~~~~~~h~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~ 85 (153)
T PRK10314 16 QLYALLQLRCAVFV---VEQNCP------YQ-DIDGDDLTGDNRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEA 85 (153)
T ss_pred HHHHHHHHHHHHhh---hhcCCC------cc-ccCCCCCCCCcEEEEEEECCEEEEEEEEecCCCCCCCEEEEEEEECHH
Confidence 46677777777772 111222 21 233333211 22344567999999999987653 3689999999999
Q ss_pred ccccChhHHHHHHHHHHHhhC-CccEEEecchhhHHHHHHhccCcEEcCHH
Q 002950 785 YQGKGCFQALFSCIERLLCSL-NVENLVLPAAEKAESIWTKKFGFRKMSRE 834 (863)
Q Consensus 785 ~RgqG~gr~L~~~iE~~l~~l-gV~~LvL~A~~~A~~~w~~kfGF~~i~~~ 834 (863)
|||+|+|++||..+++.++.. +...++|.|+..|++||+ ||||+.+++.
T Consensus 86 ~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~-k~GF~~~g~~ 135 (153)
T PRK10314 86 LRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQ-SFGFIPVTEV 135 (153)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHH-HCCCEECCCc
Confidence 999999999999999998875 788999999999999999 9999999974
No 2
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.14 E-value=6.9e-11 Score=116.65 Aligned_cols=91 Identities=16% Similarity=0.309 Sum_probs=79.3
Q ss_pred eecccEEEEEEeCCeEEEEEEEE-EecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHH
Q 002950 745 EFGGMYSVILTVKSVVVSAGLLR-IFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWT 823 (863)
Q Consensus 745 ~~~Gfy~~vl~~~~~vV~aA~lr-i~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~ 823 (863)
++..|+.+ +.+|.+||||.+. +.+.+++||.-|||+|+|||+|+|..|+..|+..|+++|++++++.|. . .+-|+
T Consensus 38 ~i~dF~i~--E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt-~-~~~~F 113 (153)
T COG1246 38 EIDDFTII--ERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT-R-SPEFF 113 (153)
T ss_pred HHhhheee--eeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec-c-cHHHH
Confidence 44566655 7799999999999 789999999999999999999999999999999999999999999995 3 44455
Q ss_pred hccCcEEcCHHHHHhh
Q 002950 824 KKFGFRKMSRERLLKY 839 (863)
Q Consensus 824 ~kfGF~~i~~~~~~~~ 839 (863)
.++||+.++.+++..-
T Consensus 114 ~~~GF~~vd~~~LP~~ 129 (153)
T COG1246 114 AERGFTRVDKDELPEE 129 (153)
T ss_pred HHcCCeECccccCCHH
Confidence 5999999999766543
No 3
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=99.11 E-value=2.1e-11 Score=127.77 Aligned_cols=94 Identities=29% Similarity=0.792 Sum_probs=78.0
Q ss_pred ccccccccc----------CCCceeecCCCCCcccccccCCC-----CCCCCCCCCcccccCCCCCccCcccccCCCCCC
Q 002950 507 SDDMCHVCG----------DGENLLLCNGCPLAFHAACLDPL-----LIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAP 571 (863)
Q Consensus 507 ~dd~C~vCg----------dgG~Ll~Cd~C~~sfH~~Cl~p~-----~vp~g~W~C~~C~~~~~~e~~dpIr~~r~~k~~ 571 (863)
...+|.-|- ...+|+.|..|+|+-|..||... .|....|+|..|.
T Consensus 223 Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck-------------------- 282 (336)
T KOG1244|consen 223 PNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECK-------------------- 282 (336)
T ss_pred CCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecc--------------------
Confidence 345777783 23589999999999999999863 5667899999997
Q ss_pred CccccccccccCCCCccchhhhcccCCCccccCCCCceeeccCcccccCccccccCCCCCCcCCCCCCceecCCchhh
Q 002950 572 GAEVGGCVICRLSPSENFDIRLCRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRI 649 (863)
Q Consensus 572 ~~e~~~C~vC~~~~~e~~~l~l~r~~d~~~~~~~~~~Ll~CdqC~rayHv~CL~p~g~~~L~evP~g~WfCc~~C~~i 649 (863)
.|.+|+. ...++.|++||-|+|+||++||.| +|.+.|+|.|-| .-|-..
T Consensus 283 -----~csicgt-------------------senddqllfcddcdrgyhmyclsp----pm~eppegswsc-~KOG~~ 331 (336)
T KOG1244|consen 283 -----YCSICGT-------------------SENDDQLLFCDDCDRGYHMYCLSP----PMVEPPEGSWSC-HLCLEE 331 (336)
T ss_pred -----eeccccC-------------------cCCCceeEeecccCCceeeEecCC----CcCCCCCCchhH-HHHHHH
Confidence 6999932 224678999999999999999997 899999999999 788554
No 4
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.10 E-value=6.7e-10 Score=97.02 Aligned_cols=77 Identities=21% Similarity=0.181 Sum_probs=67.2
Q ss_pred cEEEEEEeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCc
Q 002950 749 MYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGF 828 (863)
Q Consensus 749 fy~~vl~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF 828 (863)
-+.++++.++++||++.+...++ .+.|..|||+|+|||||+|+.||..+.+.+.. ..+++.+.+.+.+||+ ++||
T Consensus 3 ~~~~~~~~~~~ivG~~~~~~~~~-~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~fY~-~~GF 77 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLWPNED-FAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIKFYE-KLGF 77 (79)
T ss_dssp EEEEEEEETTEEEEEEEEEETTT-EEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHHHHH-HTTE
T ss_pred cEEEEEEECCEEEEEEEEEEcCC-EEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHHHHH-HCcC
Confidence 35677799999999999976665 89999999999999999999999999888854 5667888899999999 9999
Q ss_pred EE
Q 002950 829 RK 830 (863)
Q Consensus 829 ~~ 830 (863)
++
T Consensus 78 ~~ 79 (79)
T PF13508_consen 78 EE 79 (79)
T ss_dssp EE
T ss_pred CC
Confidence 85
No 5
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.06 E-value=9.6e-10 Score=95.38 Aligned_cols=74 Identities=22% Similarity=0.279 Sum_probs=68.5
Q ss_pred EeCCeEEEEEEEEEecC-----eeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchh---hHHHHHHhcc
Q 002950 755 TVKSVVVSAGLLRIFGR-----EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAE---KAESIWTKKF 826 (863)
Q Consensus 755 ~~~~~vV~aA~lri~g~-----~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~---~A~~~w~~kf 826 (863)
+.+|+|||++.+++... ..+.|..++|+++|||||+|+.||+.+++.+++.|+..|.+.+.+ .+..||+ |+
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~-k~ 80 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYE-KL 80 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHH-HT
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHH-Hc
Confidence 67999999999999886 499999999999999999999999999999999999999988774 5669999 99
Q ss_pred CcE
Q 002950 827 GFR 829 (863)
Q Consensus 827 GF~ 829 (863)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 6
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=99.05 E-value=8.9e-11 Score=135.08 Aligned_cols=133 Identities=26% Similarity=0.577 Sum_probs=88.9
Q ss_pred cccccccCC-----CceeecCC--CCCcccccccCCCCCCCCCCCCccccc-----CCCCCc------------------
Q 002950 509 DMCHVCGDG-----ENLLLCNG--CPLAFHAACLDPLLIPESGWRCPNCRQ-----GHSSSM------------------ 558 (863)
Q Consensus 509 d~C~vCgdg-----G~Ll~Cd~--C~~sfH~~Cl~p~~vp~g~W~C~~C~~-----~~~~e~------------------ 558 (863)
.-|.||.|. ..|++||+ |.-+.|+.|+++.+||.|+|||+.|.. .+.+|.
T Consensus 6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAH 85 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAH 85 (900)
T ss_pred cceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceE
Confidence 459999864 48999998 999999999999999999999999975 122221
Q ss_pred -----------------cCcccccCCCCCCCcc-ccccccccCCCCccchhhhcccCCCccccCCCCceeecc--Ccccc
Q 002950 559 -----------------SRSVDLKGGLEAPGAE-VGGCVICRLSPSENFDIRLCRSHDFSAATFDDRTVIYCD--QCEKE 618 (863)
Q Consensus 559 -----------------~dpIr~~r~~k~~~~e-~~~C~vC~~~~~e~~~l~l~r~~d~~~~~~~~~~Ll~Cd--qC~ra 618 (863)
+.||-+..+ +.+. .-.|+||...|.+ .....+..|.|. .|.++
T Consensus 86 VVCALYIPEVrFgNV~TMEPIiLq~V---P~dRfnKtCYIC~E~Grp--------------nkA~~GACMtCNKs~Ckqa 148 (900)
T KOG0956|consen 86 VVCALYIPEVRFGNVHTMEPIILQDV---PHDRFNKTCYICNEEGRP--------------NKAAKGACMTCNKSGCKQA 148 (900)
T ss_pred EEEEeeccceeecccccccceeeccC---chhhhcceeeeecccCCc--------------cccccccceecccccchhh
Confidence 222211110 0010 1257777332211 112356788897 79999
Q ss_pred cCccccccCCCCCCcC-CCCCCceecCCchhhHHhhhhhhc
Q 002950 619 FHVGCLRKNGLCDLKE-IPKDKWFCCDDCNRIHAALQDFVS 658 (863)
Q Consensus 619 yHv~CL~p~g~~~L~e-vP~g~WfCc~~C~~i~~~Lq~ll~ 658 (863)
||+.|.+..|+...++ .-.++...|.+|+..+.+|.+--.
T Consensus 149 FHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsKlkk~~~ 189 (900)
T KOG0956|consen 149 FHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSKLKKSPA 189 (900)
T ss_pred hhhhHhhhhccceeccccccccceechhHHHHHHHhhcCCC
Confidence 9999998887655444 223444334999999999987654
No 7
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.98 E-value=2.9e-09 Score=98.10 Aligned_cols=74 Identities=23% Similarity=0.349 Sum_probs=65.2
Q ss_pred cEEEEEEeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCc
Q 002950 749 MYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGF 828 (863)
Q Consensus 749 fy~~vl~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF 828 (863)
...+|++.++++||.+.++ .-++|..++|+|+|||+|+|++||..+++.|+. |++.|.+.+...|.+||+ ++||
T Consensus 44 ~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~-~~GF 117 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYR-KLGF 117 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHH-HTT-
T ss_pred CEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHH-hCCC
Confidence 5677789999999999986 334599999999999999999999999999988 999999999999999999 9998
No 8
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.91 E-value=7.5e-10 Score=131.44 Aligned_cols=143 Identities=28% Similarity=0.582 Sum_probs=98.4
Q ss_pred CCCCcccccccCCC--CCCCCCCCCccccc-CCCCCccCcccccCCCCCCCccccccccccCCCCccchhhhcccCCCcc
Q 002950 525 GCPLAFHAACLDPL--LIPESGWRCPNCRQ-GHSSSMSRSVDLKGGLEAPGAEVGGCVICRLSPSENFDIRLCRSHDFSA 601 (863)
Q Consensus 525 ~C~~sfH~~Cl~p~--~vp~g~W~C~~C~~-~~~~e~~dpIr~~r~~k~~~~e~~~C~vC~~~~~e~~~l~l~r~~d~~~ 601 (863)
.|+|.||..|+.|. ..|+++|.|+.|.. ..+.++.+.- ....+...|.+|
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~~~~~~~-------~~~~~~e~c~ic-------------------- 53 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQVEAKDDD-------WDDAEQEACRIC-------------------- 53 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhcccccccccCC-------cchhhhhhhhhh--------------------
Confidence 48999999999985 55689999999864 2222211100 112333467777
Q ss_pred ccCCCCceeeccCcccccCccccccCCCCCCcCCCCCCceecCCch--hhHHhhhhhhcCCCccCCCC---ccccccccc
Q 002950 602 ATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCN--RIHAALQDFVSNRAQTIPAS---SLSTINRKH 676 (863)
Q Consensus 602 ~~~~~~~Ll~CdqC~rayHv~CL~p~g~~~L~evP~g~WfCc~~C~--~i~~~Lq~ll~~g~~~l~~~---ll~~i~kk~ 676 (863)
.+.+.++.||.|+.+||..|+.+ ++...|.++|.| ..|. ....+.+.++.|+..+.+.. ..+.+.. .
T Consensus 54 --~~~g~~l~c~tC~~s~h~~cl~~----pl~~~p~~~~~c-~Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~~~~~~-~ 125 (696)
T KOG0383|consen 54 --ADGGELLWCDTCPASFHASCLGP----PLTPQPNGEFIC-PRCFCPKNAGKIEKILGWRWKPTPKPREGNQGVISP-R 125 (696)
T ss_pred --cCCCcEEEeccccHHHHHHccCC----CCCcCCccceee-eeeccCCCcccccccceeEecCCCCccccCcCccCC-c
Confidence 46789999999999999999987 888999999999 4663 33346778887666544422 2222211 1
Q ss_pred cccCccccCCcchhhhhhccccccchhh
Q 002950 677 IEKGILFDGTMNDVQWQMLKKAQCFEEK 704 (863)
Q Consensus 677 e~kg~~~~~~~y~vkW~lLs~k~~swe~ 704 (863)
...++. .++|+++|++++|++|.|..
T Consensus 126 ~~~~~~--~re~~vk~qg~s~~~c~~~~ 151 (696)
T KOG0383|consen 126 RSNGIV--EREFFVKWQGLSYWHCSWKS 151 (696)
T ss_pred ccccch--hhhcccccccCCccchhHHH
Confidence 122333 58899999999999999984
No 9
>PTZ00330 acetyltransferase; Provisional
Probab=98.89 E-value=9e-09 Score=98.81 Aligned_cols=83 Identities=23% Similarity=0.317 Sum_probs=72.4
Q ss_pred EEEEEEeCCeEEEEEEEEEe------cCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHH
Q 002950 750 YSVILTVKSVVVSAGLLRIF------GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWT 823 (863)
Q Consensus 750 y~~vl~~~~~vV~aA~lri~------g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~ 823 (863)
+.++...+|++||.+.+... +...++|..+.|.++|||+|+|++||..+++.++..|+.+++|.+...|..||+
T Consensus 53 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~ 132 (147)
T PTZ00330 53 RVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYK 132 (147)
T ss_pred EEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHH
Confidence 34455578999999998653 223678999999999999999999999999999999999999999999999999
Q ss_pred hccCcEEcCH
Q 002950 824 KKFGFRKMSR 833 (863)
Q Consensus 824 ~kfGF~~i~~ 833 (863)
++||+....
T Consensus 133 -k~GF~~~~~ 141 (147)
T PTZ00330 133 -KLGFRACER 141 (147)
T ss_pred -HCCCEEece
Confidence 999998763
No 10
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=98.88 E-value=6.2e-09 Score=99.57 Aligned_cols=80 Identities=14% Similarity=0.100 Sum_probs=69.8
Q ss_pred EEEEeCCeEEEEEEEEEec-----CeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHHHH
Q 002950 752 VILTVKSVVVSAGLLRIFG-----REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESIWT 823 (863)
Q Consensus 752 ~vl~~~~~vV~aA~lri~g-----~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~---~~A~~~w~ 823 (863)
+|+..++++||++.++... ...++|..++|.|+|||||+|+.||..+++.++..|+..+.|.+. ..|+.||+
T Consensus 50 ~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~ 129 (144)
T PRK10146 50 HLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYL 129 (144)
T ss_pred EEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHH
Confidence 4567889999999987632 225789999999999999999999999999999999999999876 48999999
Q ss_pred hccCcEEcC
Q 002950 824 KKFGFRKMS 832 (863)
Q Consensus 824 ~kfGF~~i~ 832 (863)
++||...+
T Consensus 130 -~~Gf~~~~ 137 (144)
T PRK10146 130 -REGYEQSH 137 (144)
T ss_pred -HcCCchhh
Confidence 99998764
No 11
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.83 E-value=1.8e-08 Score=97.65 Aligned_cols=82 Identities=13% Similarity=0.241 Sum_probs=70.2
Q ss_pred EEEEEEe--CCeEEEEEEEEEec------CeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHH
Q 002950 750 YSVILTV--KSVVVSAGLLRIFG------REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESI 821 (863)
Q Consensus 750 y~~vl~~--~~~vV~aA~lri~g------~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~ 821 (863)
|.++... ++++||.+.+++.. ..++.|..++|.++|||||||+.||..+++.|+.+|+++|.|.+.+...+|
T Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~ 133 (150)
T PLN02706 54 LICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAF 133 (150)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHH
Confidence 4444454 68999999886432 356778889999999999999999999999999999999999999888999
Q ss_pred HHhccCcEEcC
Q 002950 822 WTKKFGFRKMS 832 (863)
Q Consensus 822 w~~kfGF~~i~ 832 (863)
|+ |+||+..+
T Consensus 134 y~-k~GF~~~g 143 (150)
T PLN02706 134 YE-KCGYVRKE 143 (150)
T ss_pred HH-HCcCEEeh
Confidence 99 99999865
No 12
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.82 E-value=1.1e-08 Score=112.30 Aligned_cols=73 Identities=21% Similarity=0.335 Sum_probs=67.7
Q ss_pred EEeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEcC
Q 002950 754 LTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMS 832 (863)
Q Consensus 754 l~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i~ 832 (863)
...++++||++++.. .+|..|||+++|||||+|++||..+++.+++.|+++++|.+..++.+||+ |+||+.++
T Consensus 11 ~~~~~~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYe-k~GF~~~~ 83 (297)
T cd02169 11 FDDAGELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFR-GLGFKELA 83 (297)
T ss_pred EEECCEEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHH-HCCCEEec
Confidence 356799999998843 36899999999999999999999999999999999999999999999999 99999998
No 13
>PRK07757 acetyltransferase; Provisional
Probab=98.82 E-value=1.5e-08 Score=98.55 Aligned_cols=82 Identities=22% Similarity=0.353 Sum_probs=73.2
Q ss_pred EEEeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEcC
Q 002950 753 ILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMS 832 (863)
Q Consensus 753 vl~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i~ 832 (863)
++..++++||.+.+.+.+.+.++|-.|+|.|+|||+|+|+.||..+++.+...|+.++.+.+. +..||+ |+||+.++
T Consensus 45 i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~--~~~~Y~-k~GF~~~~ 121 (152)
T PRK07757 45 VAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALTY--QPEFFE-KLGFREVD 121 (152)
T ss_pred EEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEeC--cHHHHH-HCCCEEcc
Confidence 446789999999999989899999999999999999999999999999999999999876543 578999 99999998
Q ss_pred HHHHH
Q 002950 833 RERLL 837 (863)
Q Consensus 833 ~~~~~ 837 (863)
..++.
T Consensus 122 ~~~~~ 126 (152)
T PRK07757 122 KEALP 126 (152)
T ss_pred cccCC
Confidence 85554
No 14
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.80 E-value=1.9e-08 Score=101.25 Aligned_cols=79 Identities=18% Similarity=0.304 Sum_probs=71.5
Q ss_pred EEEE-eCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEE
Q 002950 752 VILT-VKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRK 830 (863)
Q Consensus 752 ~vl~-~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~ 830 (863)
++++ .++++||.+.+.+...+.++|..++|+++|||+|+|++||+++++.+++.|+.+|.+... +..||+ |+||+.
T Consensus 48 ~va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~--~~~fY~-k~GF~~ 124 (169)
T PRK07922 48 WVAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF--EVEFFA-RHGFVE 124 (169)
T ss_pred EEEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec--cHHHHH-HCCCEE
Confidence 4556 889999999998888889999999999999999999999999999999999999987654 478999 999999
Q ss_pred cCH
Q 002950 831 MSR 833 (863)
Q Consensus 831 i~~ 833 (863)
++.
T Consensus 125 ~~~ 127 (169)
T PRK07922 125 IDG 127 (169)
T ss_pred Ccc
Confidence 875
No 15
>PRK03624 putative acetyltransferase; Provisional
Probab=98.77 E-value=1.7e-08 Score=94.90 Aligned_cols=83 Identities=16% Similarity=0.203 Sum_probs=70.2
Q ss_pred EEEEEEeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHHHHhcc
Q 002950 750 YSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESIWTKKF 826 (863)
Q Consensus 750 y~~vl~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~---~~A~~~w~~kf 826 (863)
+.+++..++++||.+.+... ...+.+..|+|+++|||||||+.|+..++..++.+|++++.+.+. ..++.+|+ |+
T Consensus 46 ~~~v~~~~~~~vG~~~~~~~-~~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~-k~ 123 (140)
T PRK03624 46 LFLVAEVGGEVVGTVMGGYD-GHRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYE-AL 123 (140)
T ss_pred eEEEEEcCCcEEEEEEeecc-CCCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHH-Hc
Confidence 44566788999999987653 344678889999999999999999999999999999999887765 46899998 99
Q ss_pred CcEEcCHH
Q 002950 827 GFRKMSRE 834 (863)
Q Consensus 827 GF~~i~~~ 834 (863)
||+..+..
T Consensus 124 GF~~~~~~ 131 (140)
T PRK03624 124 GYEEQDRI 131 (140)
T ss_pred CCccccEE
Confidence 99987643
No 16
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.76 E-value=2.2e-09 Score=113.50 Aligned_cols=93 Identities=23% Similarity=0.650 Sum_probs=74.9
Q ss_pred ccccccccccCC---------CceeecCCCCCcccccccCCC-----CCCCCCCCCcccccCCCCCccCcccccCCCCCC
Q 002950 506 GSDDMCHVCGDG---------ENLLLCNGCPLAFHAACLDPL-----LIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAP 571 (863)
Q Consensus 506 ~~dd~C~vCgdg---------G~Ll~Cd~C~~sfH~~Cl~p~-----~vp~g~W~C~~C~~~~~~e~~dpIr~~r~~k~~ 571 (863)
.....|.+|-++ ..+++|..|..++|+.|+..+ .+....|.|..|+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~-------------------- 315 (381)
T KOG1512|consen 256 QRRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCE-------------------- 315 (381)
T ss_pred cchhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccH--------------------
Confidence 345678888643 479999999999999999863 4456799999997
Q ss_pred CccccccccccCCCCccchhhhcccCCCccccCCCCceeeccCcccccCccccccCCCCCCcCCCCCCceecCCchh
Q 002950 572 GAEVGGCVICRLSPSENFDIRLCRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 648 (863)
Q Consensus 572 ~~e~~~C~vC~~~~~e~~~l~l~r~~d~~~~~~~~~~Ll~CdqC~rayHv~CL~p~g~~~L~evP~g~WfCc~~C~~ 648 (863)
.|.+| .++ .-+..+++||.|+|+||..|+ .|..+|.|.|.|-..|..
T Consensus 316 -----lC~IC-------------~~P------~~E~E~~FCD~CDRG~HT~CV------GL~~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 316 -----LCRIC-------------LGP------VIESEHLFCDVCDRGPHTLCV------GLQDLPRGEWICDMRCRE 362 (381)
T ss_pred -----hhhcc-------------CCc------ccchheeccccccCCCCcccc------ccccccCccchhhhHHHH
Confidence 79999 332 235679999999999999998 478899999999545743
No 17
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=98.76 E-value=5.8e-08 Score=91.25 Aligned_cols=112 Identities=21% Similarity=0.239 Sum_probs=81.0
Q ss_pred hhhHHHHHHHhhccccccccCCCccccccccccCCCceecccEEEEEEeCCeEEEEEEEEEe-----cC--eeEEEeeee
Q 002950 708 LLSSATAIFRECFDPIIAECGRDLIPVMVYGRNISGQEFGGMYSVILTVKSVVVSAGLLRIF-----GR--EVAELPLVA 780 (863)
Q Consensus 708 lLs~Al~I~~EcF~Pi~~~Sg~DlIp~Mvyg~~~~~~~~~Gfy~~vl~~~~~vV~aA~lri~-----g~--~~AEip~VA 780 (863)
-+.+...++.++|.+-.... ..+-|.++.- ..-++++...++++||.+.+-.. |. .++-|--||
T Consensus 9 d~~~i~~l~~~~F~~~~~~~-----~~~~~~~~~~----~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~ 79 (127)
T PF13527_consen 9 DFEQIIELFNEAFGDSESPP-----EIWEYFRNLY----GPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVA 79 (127)
T ss_dssp GHHHHHHHHHHHTTT-CHHH-----HHHHHHHHHH----HTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCCCCch-----hhhhhhhccc----CcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEE
Confidence 45667778888883322111 1222322211 12367777889999998887554 43 589999999
Q ss_pred eeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEc
Q 002950 781 TCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKM 831 (863)
Q Consensus 781 T~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i 831 (863)
|.|+|||||+|++||.++++.++..|+..++|-+ ...+||. +|||+.+
T Consensus 80 v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y~-~~G~~~~ 127 (127)
T PF13527_consen 80 VDPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFYR-RFGFEYA 127 (127)
T ss_dssp E-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHHH-HTTEEEE
T ss_pred ECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhhh-cCCCEEC
Confidence 9999999999999999999999999999999887 4478999 9999864
No 18
>PLN02825 amino-acid N-acetyltransferase
Probab=98.76 E-value=2.4e-08 Score=116.59 Aligned_cols=88 Identities=25% Similarity=0.376 Sum_probs=78.1
Q ss_pred EEEEeCCeEEEEEEEEEec-CeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEE
Q 002950 752 VILTVKSVVVSAGLLRIFG-REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRK 830 (863)
Q Consensus 752 ~vl~~~~~vV~aA~lri~g-~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~ 830 (863)
+|++.|+++||++.+..+. .+.+||-.|||+++|||+|+|++||+.+|+.++++|+++|+|.+ ..|..||. ++||..
T Consensus 410 ~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt-t~a~~fY~-k~GF~~ 487 (515)
T PLN02825 410 VVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT-TRTADWFV-RRGFSE 487 (515)
T ss_pred EEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe-CcHHHHHH-HCCCEE
Confidence 3468899999999987765 46899999999999999999999999999999999999999987 57889999 999999
Q ss_pred cCHHHHHhhhc
Q 002950 831 MSRERLLKYQR 841 (863)
Q Consensus 831 i~~~~~~~~~~ 841 (863)
.+.++|..-++
T Consensus 488 ~~~~~lp~~~~ 498 (515)
T PLN02825 488 CSIESLPEARR 498 (515)
T ss_pred eChhhCCHHHH
Confidence 99987766544
No 19
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=98.75 E-value=9.6e-09 Score=102.13 Aligned_cols=108 Identities=22% Similarity=0.533 Sum_probs=71.9
Q ss_pred cccccc------CCCceeecCCCCCcccccccCCCC--------CC--CCCCCCcccccCCCCCccCcccccCCCCCCCc
Q 002950 510 MCHVCG------DGENLLLCNGCPLAFHAACLDPLL--------IP--ESGWRCPNCRQGHSSSMSRSVDLKGGLEAPGA 573 (863)
Q Consensus 510 ~C~vCg------dgG~Ll~Cd~C~~sfH~~Cl~p~~--------vp--~g~W~C~~C~~~~~~e~~dpIr~~r~~k~~~~ 573 (863)
.|.+|+ ..|.|++|.+|..+||..|||+.. |. ....+|.+|.. ..+.....++
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig-----------~~~kKD~~aP 69 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIG-----------IAHKKDPRAP 69 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcC-----------hhhcccCCCC
Confidence 377884 347999999999999999999852 22 23568999964 1222333466
Q ss_pred cccccccccCCCCc------------cchhhhccc-C------CCccccCCCCceeeccCcccccCccccccCC
Q 002950 574 EVGGCVICRLSPSE------------NFDIRLCRS-H------DFSAATFDDRTVIYCDQCEKEFHVGCLRKNG 628 (863)
Q Consensus 574 e~~~C~vC~~~~~e------------~~~l~l~r~-~------d~~~~~~~~~~Ll~CdqC~rayHv~CL~p~g 628 (863)
.++.|..|...|+. +..+|...+ . +.......++.|+.|..|.|+||+.+|++.+
T Consensus 70 ~~~~C~~C~~~G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 70 HHGMCQQCKKPGPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred CCCcccccCCCCCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCCc
Confidence 77889999665542 111211111 1 1112234678899999999999999998753
No 20
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.70 E-value=2.6e-08 Score=110.80 Aligned_cols=82 Identities=16% Similarity=0.247 Sum_probs=73.9
Q ss_pred ccEEEEEEeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccC
Q 002950 748 GMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFG 827 (863)
Q Consensus 748 Gfy~~vl~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfG 827 (863)
--|+++++.++++||+|++ .|. .|..|||+++|||+|+|+.||.++++.+++.|+.+++|.+.+.+..||+ ++|
T Consensus 30 ~d~~vv~~~~~~lVg~g~l--~g~---~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~-klG 103 (332)
T TIGR00124 30 LEIFIAVYEDEEIIGCGGI--AGN---VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFE-YCG 103 (332)
T ss_pred CCEEEEEEECCEEEEEEEE--ecC---EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHH-HcC
Confidence 3577778899999999997 332 4889999999999999999999999999999999999999999999999 999
Q ss_pred cEEcCHHH
Q 002950 828 FRKMSRER 835 (863)
Q Consensus 828 F~~i~~~~ 835 (863)
|..+...+
T Consensus 104 F~~i~~~~ 111 (332)
T TIGR00124 104 FKTLAEAK 111 (332)
T ss_pred CEEeeeec
Confidence 99998643
No 21
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.69 E-value=5.5e-08 Score=111.66 Aligned_cols=84 Identities=19% Similarity=0.329 Sum_probs=74.2
Q ss_pred EEEeCCeEEEEEEEEEec-CeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEc
Q 002950 753 ILTVKSVVVSAGLLRIFG-REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKM 831 (863)
Q Consensus 753 vl~~~~~vV~aA~lri~g-~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i 831 (863)
|++.++++||++.+..+. ...++|-.++|+++|||||+|++||+.+++.|++.|+++|++.+. .+..||+ ++||+.+
T Consensus 326 V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~-~a~~fY~-k~GF~~~ 403 (429)
T TIGR01890 326 IIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTT-RTGHWFR-ERGFQTA 403 (429)
T ss_pred EEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeec-chHHHHH-HCCCEEC
Confidence 457899999999998874 468999999999999999999999999999999999999887654 5789999 9999999
Q ss_pred CHHHHHh
Q 002950 832 SRERLLK 838 (863)
Q Consensus 832 ~~~~~~~ 838 (863)
+..++..
T Consensus 404 g~~~l~~ 410 (429)
T TIGR01890 404 SVDELPE 410 (429)
T ss_pred ChhhCCH
Confidence 9865443
No 22
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.67 E-value=4.6e-08 Score=95.55 Aligned_cols=84 Identities=20% Similarity=0.160 Sum_probs=73.5
Q ss_pred EEEe-CCeEEEEEEEEEecCeeEE--EeeeeeeccccccChhHHHHHHHHHHHhhCC-ccEEEecchhhHHHHHHhccCc
Q 002950 753 ILTV-KSVVVSAGLLRIFGREVAE--LPLVATCREYQGKGCFQALFSCIERLLCSLN-VENLVLPAAEKAESIWTKKFGF 828 (863)
Q Consensus 753 vl~~-~~~vV~aA~lri~g~~~AE--ip~VAT~~~~RgqG~gr~L~~~iE~~l~~lg-V~~LvL~A~~~A~~~w~~kfGF 828 (863)
.+.. ||++|++|||-.-+....+ |.||+|.+++||+|+|+.||....+.+.+.. =+-+.|.||..+++||- +|||
T Consensus 53 ~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa-~~GF 131 (155)
T COG2153 53 LGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYA-SFGF 131 (155)
T ss_pred EEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHH-HhCc
Confidence 3444 9999999999888876666 9999999999999999999998888777766 55699999999999999 9999
Q ss_pred EEcCHHHHH
Q 002950 829 RKMSRERLL 837 (863)
Q Consensus 829 ~~i~~~~~~ 837 (863)
.+.+++-+.
T Consensus 132 v~~~e~yle 140 (155)
T COG2153 132 VRVGEEYLE 140 (155)
T ss_pred EEcCchhhc
Confidence 999997654
No 23
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.65 E-value=1e-07 Score=97.23 Aligned_cols=84 Identities=15% Similarity=0.106 Sum_probs=72.1
Q ss_pred cEEEEEEeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHHHHhc
Q 002950 749 MYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESIWTKK 825 (863)
Q Consensus 749 fy~~vl~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~---~~A~~~w~~k 825 (863)
.+.++...++++||.+.+...+...++|-.++|.++|||||+|+.|+..+++.+++.|++++++.+. ..|..||+ |
T Consensus 102 ~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~ye-k 180 (194)
T PRK10975 102 QCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYI-R 180 (194)
T ss_pred cEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHH-H
Confidence 3333444678999999998877777999999999999999999999999999999999999988754 57899999 9
Q ss_pred cCcEEcCH
Q 002950 826 FGFRKMSR 833 (863)
Q Consensus 826 fGF~~i~~ 833 (863)
+||+..+.
T Consensus 181 ~Gf~~~~~ 188 (194)
T PRK10975 181 SGANIEST 188 (194)
T ss_pred CCCeEeEE
Confidence 99998653
No 24
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.64 E-value=1.1e-07 Score=96.90 Aligned_cols=80 Identities=15% Similarity=0.083 Sum_probs=70.9
Q ss_pred EEEeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHHHHhccCcE
Q 002950 753 ILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESIWTKKFGFR 829 (863)
Q Consensus 753 vl~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~---~~A~~~w~~kfGF~ 829 (863)
+...++++||.+.++......++|-.++|.++|||||+|+.|+.++++.++.+|+.+|.+... ..|+.||+ |+||+
T Consensus 103 ~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~-klGF~ 181 (191)
T TIGR02382 103 LRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYI-RSGAN 181 (191)
T ss_pred EEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHH-HcCCc
Confidence 345689999999998777677899999999999999999999999999999999999998854 56899999 99998
Q ss_pred EcCH
Q 002950 830 KMSR 833 (863)
Q Consensus 830 ~i~~ 833 (863)
..+.
T Consensus 182 ~~~~ 185 (191)
T TIGR02382 182 IEST 185 (191)
T ss_pred cccc
Confidence 7654
No 25
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.64 E-value=1.5e-07 Score=87.67 Aligned_cols=81 Identities=22% Similarity=0.311 Sum_probs=69.3
Q ss_pred EEEEeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEec---chhhHHHHHHhccCc
Q 002950 752 VILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLP---AAEKAESIWTKKFGF 828 (863)
Q Consensus 752 ~vl~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~---A~~~A~~~w~~kfGF 828 (863)
++...++++||.+.++... ....+-.++|.++|||||+|+.|+.++++.+.+.|+.++++. ....+..||+ ++||
T Consensus 34 ~~~~~~~~~vg~~~~~~~~-~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~-~~Gf 111 (131)
T TIGR01575 34 LLARIGGKVVGYAGVQIVL-DEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYK-KLGF 111 (131)
T ss_pred EEEecCCeEEEEEEEEecC-CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHH-HcCC
Confidence 3445689999999987644 456788899999999999999999999999999999999984 4466889999 9999
Q ss_pred EEcCHH
Q 002950 829 RKMSRE 834 (863)
Q Consensus 829 ~~i~~~ 834 (863)
+.++..
T Consensus 112 ~~~~~~ 117 (131)
T TIGR01575 112 NEIAIR 117 (131)
T ss_pred Cccccc
Confidence 988763
No 26
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.61 E-value=1.1e-08 Score=114.73 Aligned_cols=124 Identities=26% Similarity=0.565 Sum_probs=74.4
Q ss_pred ccccccccccCC-----CceeecCCCCCcccccccCCCCCCCCCCCCcccccCCCCCc-------cCcccccCCCCCCCc
Q 002950 506 GSDDMCHVCGDG-----ENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQGHSSSM-------SRSVDLKGGLEAPGA 573 (863)
Q Consensus 506 ~~dd~C~vCgdg-----G~Ll~Cd~C~~sfH~~Cl~p~~vp~g~W~C~~C~~~~~~e~-------~dpIr~~r~~k~~~~ 573 (863)
+-|+.|.+|... ..+++||+|.-+.|+.|+|++-+|+|.|+|..|..+...-+ .+.+ .+...+
T Consensus 191 ~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGa-----FkqT~d 265 (669)
T COG5141 191 EFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGA-----FKQTSD 265 (669)
T ss_pred hhhhhhHhccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCCc-----eeeccC
Confidence 456789998643 47999999999999999999999999999999975222100 0000 000111
Q ss_pred cccccccccCCCCcc-----chhh-----------hcccCCCccccCCCCceeecc--CcccccCccccccCCCCCCcCC
Q 002950 574 EVGGCVICRLSPSEN-----FDIR-----------LCRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRKNGLCDLKEI 635 (863)
Q Consensus 574 e~~~C~vC~~~~~e~-----~~l~-----------l~r~~d~~~~~~~~~~Ll~Cd--qC~rayHv~CL~p~g~~~L~ev 635 (863)
..+.-.+|..+.++- .+++ .|+ -..+.....+|+.++|. .|-++||+.|.+..|.-++...
T Consensus 266 grW~H~iCA~~~pelsF~~l~~~dpI~~i~sVs~srwk-l~C~iCk~~~GtcIqCs~~nC~~aYHVtCArrag~f~~~~~ 344 (669)
T COG5141 266 GRWGHVICAMFNPELSFGHLLSKDPIDNIASVSSSRWK-LGCLICKEFGGTCIQCSYFNCTRAYHVTCARRAGYFDLNIY 344 (669)
T ss_pred CchHhHhHHHhcchhccccccccchhhhhcccchhhHh-heeeEEcccCcceeeecccchhhhhhhhhhhhcchhhhhhh
Confidence 111222222222210 0000 000 01111123578999997 7999999999998887776543
No 27
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.61 E-value=1.3e-07 Score=108.89 Aligned_cols=85 Identities=18% Similarity=0.335 Sum_probs=73.9
Q ss_pred EEEEeCCeEEEEEEEEEec-CeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEE
Q 002950 752 VILTVKSVVVSAGLLRIFG-REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRK 830 (863)
Q Consensus 752 ~vl~~~~~vV~aA~lri~g-~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~ 830 (863)
++++.++++||++.+..+. ...++|-.|+|.++|||||+|++||+.+++.+++.|+.++.+.+ ..|..||+ ++||+.
T Consensus 337 ~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY~-k~GF~~ 414 (441)
T PRK05279 337 TVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWFL-ERGFVP 414 (441)
T ss_pred EEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHHH-HCcCEE
Confidence 3557899999999887654 36899999999999999999999999999999999999998766 56899999 999999
Q ss_pred cCHHHHHh
Q 002950 831 MSRERLLK 838 (863)
Q Consensus 831 i~~~~~~~ 838 (863)
++.+++..
T Consensus 415 ~g~~~~~~ 422 (441)
T PRK05279 415 VDVDDLPE 422 (441)
T ss_pred CChhhCcH
Confidence 99855443
No 28
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.60 E-value=1.1e-07 Score=113.75 Aligned_cols=83 Identities=17% Similarity=0.219 Sum_probs=74.9
Q ss_pred EEEEeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEc
Q 002950 752 VILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKM 831 (863)
Q Consensus 752 ~vl~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i 831 (863)
+|++.++++||.+.+...+.+.++|..++|+|+|||||+|++||+.+++.+++.|++.|+|.+. +..||+ |+||+..
T Consensus 506 ~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~~--a~~FYe-k~GF~~~ 582 (614)
T PRK12308 506 AVAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLTR--VPEFFM-KQGFSPT 582 (614)
T ss_pred EEEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEeeC--cHHHHH-HCCCEEC
Confidence 4567899999999998887788999999999999999999999999999999999999988763 679999 9999999
Q ss_pred CHHHHH
Q 002950 832 SRERLL 837 (863)
Q Consensus 832 ~~~~~~ 837 (863)
+..++.
T Consensus 583 ~~~~~~ 588 (614)
T PRK12308 583 SKSLLP 588 (614)
T ss_pred CcccCC
Confidence 987644
No 29
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.59 E-value=3.1e-07 Score=88.80 Aligned_cols=85 Identities=22% Similarity=0.271 Sum_probs=72.0
Q ss_pred ccEEEEEEeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecc---hhhHHHHHHh
Q 002950 748 GMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPA---AEKAESIWTK 824 (863)
Q Consensus 748 Gfy~~vl~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A---~~~A~~~w~~ 824 (863)
+++.+++..++++||.+.++..... +++-.++|.++|||||+|+.|+..+++.++..|+..+++.+ -..|..+|+
T Consensus 39 ~~~~~~~~~~~~~vG~~~~~~~~~~-~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~- 116 (146)
T PRK09491 39 RYLNLKLTVNGQMAAFAITQVVLDE-ATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYE- 116 (146)
T ss_pred CceEEEEEECCeEEEEEEEEeecCc-eEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHH-
Confidence 5555566788999999998775543 56788999999999999999999999999999999988854 357899999
Q ss_pred ccCcEEcCHH
Q 002950 825 KFGFRKMSRE 834 (863)
Q Consensus 825 kfGF~~i~~~ 834 (863)
|+||+..+..
T Consensus 117 k~Gf~~~~~~ 126 (146)
T PRK09491 117 SLGFNEVTIR 126 (146)
T ss_pred HcCCEEeeee
Confidence 9999987753
No 30
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=98.55 E-value=2.3e-07 Score=99.92 Aligned_cols=86 Identities=15% Similarity=0.169 Sum_probs=72.7
Q ss_pred ccEEEEEEeCCeEEEEEEEEEe-cCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchh---hHHHHHH
Q 002950 748 GMYSVILTVKSVVVSAGLLRIF-GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAE---KAESIWT 823 (863)
Q Consensus 748 Gfy~~vl~~~~~vV~aA~lri~-g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~---~A~~~w~ 823 (863)
+.+.+++..++++||.+.+.+. +...+||-.++|.|+|||||+|+.||..+++.++..|++++++.+.. .|..+|.
T Consensus 157 ~~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~ 236 (266)
T TIGR03827 157 NVVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFA 236 (266)
T ss_pred CcEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHH
Confidence 3444566789999999998553 34679999999999999999999999999999999999999988764 4567898
Q ss_pred hccCcEEcCHH
Q 002950 824 KKFGFRKMSRE 834 (863)
Q Consensus 824 ~kfGF~~i~~~ 834 (863)
|+||+..+.-
T Consensus 237 -k~GF~~~G~l 246 (266)
T TIGR03827 237 -RLGYAYGGTL 246 (266)
T ss_pred -HcCCccccEE
Confidence 9999987763
No 31
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=98.53 E-value=5.6e-08 Score=110.51 Aligned_cols=135 Identities=18% Similarity=0.330 Sum_probs=94.7
Q ss_pred CccccccccccC-----CCceeecCCCCCcccccccCCCCCCCCCCCCcccccC--CCCCc---cCc-c--------ccc
Q 002950 505 GGSDDMCHVCGD-----GENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQG--HSSSM---SRS-V--------DLK 565 (863)
Q Consensus 505 ~~~dd~C~vCgd-----gG~Ll~Cd~C~~sfH~~Cl~p~~vp~g~W~C~~C~~~--~~~e~---~dp-I--------r~~ 565 (863)
......|.+|.. +.++..|+.|.++||+.|..+.....+.|.+..|... .+.+. +++ + .-.
T Consensus 80 ~~~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~~~l 159 (464)
T KOG4323|consen 80 PSSELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGALKKGRLARPSLPYPEASL 159 (464)
T ss_pred CccccCCcccccccccCchhhhhhhhhccCcccccCccCcCcCCccccccccccccccccccccccccccccccCccccc
Confidence 344556777763 3478899999999999999998777888999988762 22221 111 1 112
Q ss_pred CCCCCCCccccccccccCCCCccchhhhcccCCCccccCCCCceeeccCcccccCccccccCCCCCCcCCCCCCceecCC
Q 002950 566 GGLEAPGAEVGGCVICRLSPSENFDIRLCRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDD 645 (863)
Q Consensus 566 r~~k~~~~e~~~C~vC~~~~~e~~~l~l~r~~d~~~~~~~~~~Ll~CdqC~rayHv~CL~p~g~~~L~evP~g~WfCc~~ 645 (863)
.|......+. .|.+|+..++. ..+.|++|+.|..|||..|+++.-.+.|...|..+||| ..
T Consensus 160 ~wD~~~~~n~-qc~vC~~g~~~-----------------~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C-~~ 220 (464)
T KOG4323|consen 160 DWDSGHKVNL-QCSVCYCGGPG-----------------AGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFC-DV 220 (464)
T ss_pred ccCccccccc-eeeeeecCCcC-----------------ccceeeeecccccHHHHHhccCCCCHhhccCccceEee-hh
Confidence 2223333333 38899443222 34489999999999999999987777788889999999 78
Q ss_pred chhhHHhhhhhhc
Q 002950 646 CNRIHAALQDFVS 658 (863)
Q Consensus 646 C~~i~~~Lq~ll~ 658 (863)
|..-.+.+.++-.
T Consensus 221 C~~~~~~~~r~t~ 233 (464)
T KOG4323|consen 221 CNRGPKKVPRLTL 233 (464)
T ss_pred hccchhhcccccc
Confidence 9887777666544
No 32
>PRK13688 hypothetical protein; Provisional
Probab=98.52 E-value=3.2e-07 Score=91.82 Aligned_cols=76 Identities=20% Similarity=0.277 Sum_probs=60.6
Q ss_pred EEEeCCeEEEEEEEEEec----------CeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHH
Q 002950 753 ILTVKSVVVSAGLLRIFG----------REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIW 822 (863)
Q Consensus 753 vl~~~~~vV~aA~lri~g----------~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w 822 (863)
+++.++++||++.+...+ .+.++|-.|||.++|||||+|++||+.+++ .++. +.+.+...|..||
T Consensus 49 ~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~----~~~~-~~~~~~~~a~~FY 123 (156)
T PRK13688 49 GIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKS----FQLP-IKTIARNKSKDFW 123 (156)
T ss_pred EEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHH----hCCe-EEEEeccchHHHH
Confidence 356789999988875432 467899999999999999999999986554 3444 4455677899999
Q ss_pred HhccCcEEcCHH
Q 002950 823 TKKFGFRKMSRE 834 (863)
Q Consensus 823 ~~kfGF~~i~~~ 834 (863)
+ |+||+.++..
T Consensus 124 ~-k~GF~~~~~~ 134 (156)
T PRK13688 124 L-KLGFTPVEYK 134 (156)
T ss_pred H-hCCCEEeEEe
Confidence 9 9999998765
No 33
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=98.51 E-value=5.6e-07 Score=87.50 Aligned_cols=85 Identities=16% Similarity=0.295 Sum_probs=70.2
Q ss_pred cEEEEEEeCCeEEEEEEEEEec----CeeEEEeeeeeeccccccChhHHHHHHHHHHHhh-CCccEEEecch---hhHHH
Q 002950 749 MYSVILTVKSVVVSAGLLRIFG----REVAELPLVATCREYQGKGCFQALFSCIERLLCS-LNVENLVLPAA---EKAES 820 (863)
Q Consensus 749 fy~~vl~~~~~vV~aA~lri~g----~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~-lgV~~LvL~A~---~~A~~ 820 (863)
.+.+++..++++||.+.+.... ...+++. ++|.++|||||+|+.||+.+++.+.. +|+.++.+... ..|+.
T Consensus 51 ~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~ 129 (162)
T PRK10140 51 IKQLVACIDGDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIK 129 (162)
T ss_pred cEEEEEEECCEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHH
Confidence 4556777899999999987542 3456664 89999999999999999999999988 79898877664 68899
Q ss_pred HHHhccCcEEcCHHH
Q 002950 821 IWTKKFGFRKMSRER 835 (863)
Q Consensus 821 ~w~~kfGF~~i~~~~ 835 (863)
||+ |+||+..+...
T Consensus 130 ~y~-k~GF~~~g~~~ 143 (162)
T PRK10140 130 VYK-KYGFEIEGTGK 143 (162)
T ss_pred HHH-HCCCEEEeecc
Confidence 999 99999988743
No 34
>PRK09831 putative acyltransferase; Provisional
Probab=98.49 E-value=3.3e-07 Score=89.21 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=62.3
Q ss_pred EEEEeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEc
Q 002950 752 VILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKM 831 (863)
Q Consensus 752 ~vl~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i 831 (863)
+|+..+|++||.+.+.. +.+..++|.++|||||+|++||..+++.+.. |.+.+...|..||+ |+||+.+
T Consensus 56 ~v~~~~~~iiG~~~~~~-----~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~-k~Gf~~~ 124 (147)
T PRK09831 56 RVAVINAQPVGFITCIE-----HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFE-RYGFQTV 124 (147)
T ss_pred EEEEECCEEEEEEEehh-----ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHH-HCCCEEe
Confidence 35578899999988742 4678899999999999999999999999876 45566778999999 9999999
Q ss_pred CHHH
Q 002950 832 SRER 835 (863)
Q Consensus 832 ~~~~ 835 (863)
+...
T Consensus 125 g~~~ 128 (147)
T PRK09831 125 KQQR 128 (147)
T ss_pred eccc
Confidence 9865
No 35
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.45 E-value=1.5e-07 Score=109.27 Aligned_cols=45 Identities=40% Similarity=1.181 Sum_probs=41.3
Q ss_pred ccccccccCCCce---eecCCCCCcccccccCCC----CCCCCCCCCccccc
Q 002950 508 DDMCHVCGDGENL---LLCNGCPLAFHAACLDPL----LIPESGWRCPNCRQ 552 (863)
Q Consensus 508 dd~C~vCgdgG~L---l~Cd~C~~sfH~~Cl~p~----~vp~g~W~C~~C~~ 552 (863)
.++|..|+..|.. ++||+|+++||+.||.|| .+|.|.|+|+.|..
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~ 304 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKI 304 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCee
Confidence 6799999988866 999999999999999987 78899999999976
No 36
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.44 E-value=1e-07 Score=117.43 Aligned_cols=54 Identities=35% Similarity=0.851 Sum_probs=46.3
Q ss_pred cCCccccccccccCC-----CceeecCCCCCcccccccCCCCCCCCCCCCcccccCCCC
Q 002950 503 TTGGSDDMCHVCGDG-----ENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQGHSS 556 (863)
Q Consensus 503 ~~~~~dd~C~vCgdg-----G~Ll~Cd~C~~sfH~~Cl~p~~vp~g~W~C~~C~~~~~~ 556 (863)
...+.|..|.+|.++ ..+++||+|..++|+.|+|.+-+|+|.|+|..|....++
T Consensus 214 ~~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~ 272 (1051)
T KOG0955|consen 214 ALLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQR 272 (1051)
T ss_pred cccCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCc
Confidence 344678899999865 379999999999999999999999999999999874443
No 37
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=98.43 E-value=1.1e-06 Score=87.46 Aligned_cols=75 Identities=21% Similarity=0.239 Sum_probs=65.1
Q ss_pred EEEEEEEEEec---CeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHHHHhccCcEEcCH
Q 002950 760 VVSAGLLRIFG---REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESIWTKKFGFRKMSR 833 (863)
Q Consensus 760 vV~aA~lri~g---~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~---~~A~~~w~~kfGF~~i~~ 833 (863)
.|||+...... ..-++|-.+||+++|||||+|++|+..+.+.+++.|...++|.+. ..|..+|+ +|||.+...
T Consensus 68 ~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~-sLGF~r~~r 146 (165)
T KOG3139|consen 68 TVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYE-SLGFKRDKR 146 (165)
T ss_pred eEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHH-hcCceEecc
Confidence 47776665533 346899999999999999999999999999999999999999987 58999999 999999876
Q ss_pred HH
Q 002950 834 ER 835 (863)
Q Consensus 834 ~~ 835 (863)
..
T Consensus 147 ~~ 148 (165)
T KOG3139|consen 147 LF 148 (165)
T ss_pred ee
Confidence 53
No 38
>PHA00673 acetyltransferase domain containing protein
Probab=98.41 E-value=1.4e-06 Score=87.18 Aligned_cols=85 Identities=14% Similarity=0.111 Sum_probs=73.9
Q ss_pred ccEEEEEEeCCeEEEEEEEEEec------CeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchh--hHH
Q 002950 748 GMYSVILTVKSVVVSAGLLRIFG------REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAE--KAE 819 (863)
Q Consensus 748 Gfy~~vl~~~~~vV~aA~lri~g------~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~--~A~ 819 (863)
+-..+|.+.+|++||++.+.+.- ...+.|--|.|++++||||+|++||..+|+.+++.|...|.+.|.+ -.+
T Consensus 54 ~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv 133 (154)
T PHA00673 54 VAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLV 133 (154)
T ss_pred CcEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccch
Confidence 34455667799999999987733 4678999999999999999999999999999999999999999996 578
Q ss_pred HHHHhccCcEEcCH
Q 002950 820 SIWTKKFGFRKMSR 833 (863)
Q Consensus 820 ~~w~~kfGF~~i~~ 833 (863)
.||. +.|++....
T Consensus 134 ~fy~-~~g~~~~~~ 146 (154)
T PHA00673 134 QLLP-AAGYRETNR 146 (154)
T ss_pred HHHH-hCCchhhch
Confidence 9999 999987654
No 39
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=98.37 E-value=1.4e-06 Score=86.43 Aligned_cols=83 Identities=14% Similarity=0.101 Sum_probs=67.6
Q ss_pred EEEEEE-eCCeEEEEEEEEE--ecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHHHH
Q 002950 750 YSVILT-VKSVVVSAGLLRI--FGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESIWT 823 (863)
Q Consensus 750 y~~vl~-~~~~vV~aA~lri--~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~---~~A~~~w~ 823 (863)
+.+|.. .++++||.+.+.. ...+.+.+-.+||+++|||||+|++|+..+++.++..++.+|.+... ..|..+|+
T Consensus 40 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~ 119 (157)
T TIGR02406 40 TSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFK 119 (157)
T ss_pred cEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHH
Confidence 445556 4689999876533 33467889999999999999999999999999999999998887654 68889999
Q ss_pred hccCcEEcCH
Q 002950 824 KKFGFRKMSR 833 (863)
Q Consensus 824 ~kfGF~~i~~ 833 (863)
|+||+....
T Consensus 120 -k~G~~~~~~ 128 (157)
T TIGR02406 120 -ALARRRGVH 128 (157)
T ss_pred -HhCcccCCC
Confidence 999987444
No 40
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.35 E-value=1.3e-06 Score=84.60 Aligned_cols=84 Identities=23% Similarity=0.311 Sum_probs=75.0
Q ss_pred cEEEEEEe--CCeEEEEEEEEE-----ecC-eeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHH
Q 002950 749 MYSVILTV--KSVVVSAGLLRI-----FGR-EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAES 820 (863)
Q Consensus 749 fy~~vl~~--~~~vV~aA~lri-----~g~-~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~ 820 (863)
+|.+|+++ .++|||+|+|.| ++- .-.+|.=|+|+++||||++|+.|+..+-.+++++|+=.+.|.-.++..+
T Consensus 53 Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~ 132 (150)
T KOG3396|consen 53 YYIVVIEDKESEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVK 132 (150)
T ss_pred EEEEEEEeCCcCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhh
Confidence 67777774 499999999987 332 3568899999999999999999999999999999999999999999999
Q ss_pred HHHhccCcEEcCH
Q 002950 821 IWTKKFGFRKMSR 833 (863)
Q Consensus 821 ~w~~kfGF~~i~~ 833 (863)
||+ ||||+..+.
T Consensus 133 FYe-KcG~s~~~~ 144 (150)
T KOG3396|consen 133 FYE-KCGYSNAGN 144 (150)
T ss_pred HHH-HcCccccch
Confidence 999 999998773
No 41
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.33 E-value=2.8e-06 Score=91.60 Aligned_cols=81 Identities=9% Similarity=0.005 Sum_probs=65.5
Q ss_pred EEEEEEeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecch-hhHHHHHHhccCc
Q 002950 750 YSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA-EKAESIWTKKFGF 828 (863)
Q Consensus 750 y~~vl~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~-~~A~~~w~~kfGF 828 (863)
+.+|...++++||.+.+.......+++-.++|+|+|||||+|++||..+++.+. +--.|.+... ..|+.||+ ++||
T Consensus 47 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~--~~~~~~~~~~n~~a~~fy~-~~Gf 123 (292)
T TIGR03448 47 RHLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG--GRLRVWAHGDLPAARALAS-RLGL 123 (292)
T ss_pred eEEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc--CceEEEEcCCCHHHHHHHH-HCCC
Confidence 455667889999999988875555788899999999999999999999999875 2234444433 67999999 9999
Q ss_pred EEcCH
Q 002950 829 RKMSR 833 (863)
Q Consensus 829 ~~i~~ 833 (863)
+.+..
T Consensus 124 ~~~~~ 128 (292)
T TIGR03448 124 VPTRE 128 (292)
T ss_pred EEccE
Confidence 98865
No 42
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=98.33 E-value=2.1e-06 Score=77.53 Aligned_cols=79 Identities=20% Similarity=0.239 Sum_probs=61.4
Q ss_pred EEEeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEe--cchhhHHHHHHhccCcEE
Q 002950 753 ILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL--PAAEKAESIWTKKFGFRK 830 (863)
Q Consensus 753 vl~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL--~A~~~A~~~w~~kfGF~~ 830 (863)
+...+++.++.+...+..+. ++|-.|.|.|+|||+|+|+.|+.++.+.+.+.|..-+.. ..-..|+.+|+ |+||+.
T Consensus 2 ~G~f~~~~~~l~~~~~~~~~-g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~-klGf~~ 79 (86)
T PF08445_consen 2 VGVFDGELVALVAWIIRSDD-GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYE-KLGFRE 79 (86)
T ss_dssp EEEECTCCEEEEEEEEESCT-CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHH-HCT-EE
T ss_pred EEEEECCccceeeEeeeCCC-cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHH-HcCCEE
Confidence 34455677777777776666 999999999999999999999999999999888875332 23357899999 999998
Q ss_pred cCH
Q 002950 831 MSR 833 (863)
Q Consensus 831 i~~ 833 (863)
+.+
T Consensus 80 ~~~ 82 (86)
T PF08445_consen 80 IEE 82 (86)
T ss_dssp EEE
T ss_pred EEE
Confidence 753
No 43
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=98.32 E-value=3.8e-06 Score=81.51 Aligned_cols=83 Identities=22% Similarity=0.321 Sum_probs=68.6
Q ss_pred cEEEEEEe-CCeEEEEEEEEEecC--eeEEEeeeeeeccccccChhHHHHHHHHHHH-hhCCccEEEecch---hhHHHH
Q 002950 749 MYSVILTV-KSVVVSAGLLRIFGR--EVAELPLVATCREYQGKGCFQALFSCIERLL-CSLNVENLVLPAA---EKAESI 821 (863)
Q Consensus 749 fy~~vl~~-~~~vV~aA~lri~g~--~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l-~~lgV~~LvL~A~---~~A~~~ 821 (863)
.+.+++.. +|++||.+.++.... ..+++- +-+.++||++|+|+.|+..|++.| ..+|+++|.+... ..|+.|
T Consensus 50 ~~~~~v~~~~g~iiG~~~~~~~~~~~~~~~~~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~ 128 (155)
T PF13420_consen 50 QRLFLVAEEDGKIIGYVSLRDIDPYNHTAELS-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINF 128 (155)
T ss_dssp TEEEEEEECTTEEEEEEEEEESSSGTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHH
T ss_pred CcEEEEEEcCCcEEEEEEEEeeeccCCEEEEe-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHH
Confidence 44444455 999999999997664 578887 555599999999999999999999 9999999886544 689999
Q ss_pred HHhccCcEEcCH
Q 002950 822 WTKKFGFRKMSR 833 (863)
Q Consensus 822 w~~kfGF~~i~~ 833 (863)
|+ ++||+..+.
T Consensus 129 ~~-~~GF~~~g~ 139 (155)
T PF13420_consen 129 YK-KLGFEEEGE 139 (155)
T ss_dssp HH-HTTEEEEEE
T ss_pred HH-hCCCEEEEE
Confidence 99 999999875
No 44
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.31 E-value=2e-06 Score=92.71 Aligned_cols=76 Identities=18% Similarity=0.173 Sum_probs=65.3
Q ss_pred CCeEEEEEEEEEec--CeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHHHHhccCcEEc
Q 002950 757 KSVVVSAGLLRIFG--REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESIWTKKFGFRKM 831 (863)
Q Consensus 757 ~~~vV~aA~lri~g--~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~---~~A~~~w~~kfGF~~i 831 (863)
++++||.+.+++.. .++++|-.++|+++|||||+|++||..+++.++..|+..+.+... ..|..||+ |+||+..
T Consensus 208 ~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~-k~GF~~~ 286 (292)
T TIGR03448 208 PGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYE-KLGFTVA 286 (292)
T ss_pred CCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHH-HcCCEEc
Confidence 68999987666644 347888889999999999999999999999999999999887765 47999999 9999986
Q ss_pred CH
Q 002950 832 SR 833 (863)
Q Consensus 832 ~~ 833 (863)
+.
T Consensus 287 ~~ 288 (292)
T TIGR03448 287 EV 288 (292)
T ss_pred cc
Confidence 54
No 45
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.31 E-value=2.1e-07 Score=108.26 Aligned_cols=92 Identities=32% Similarity=0.927 Sum_probs=73.5
Q ss_pred cccccccccCC-----CceeecCCCCCcccccccCCC---CCCCCCCCCcccccCCCCCccCcccccCCCCCCCcccccc
Q 002950 507 SDDMCHVCGDG-----ENLLLCNGCPLAFHAACLDPL---LIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAPGAEVGGC 578 (863)
Q Consensus 507 ~dd~C~vCgdg-----G~Ll~Cd~C~~sfH~~Cl~p~---~vp~g~W~C~~C~~~~~~e~~dpIr~~r~~k~~~~e~~~C 578 (863)
...+|.+|+.. |.|+.|..|...||.+|+... .+-.+.|.|+.|+ .|
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~cr-------------------------vC 71 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCR-------------------------VC 71 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCce-------------------------ee
Confidence 34578888743 579999999999999999852 2224559999997 68
Q ss_pred ccccCCCCccchhhhcccCCCccccCCCCceeeccCcccccCccccccCCCCCCcCCCCCCceecCCch
Q 002950 579 VICRLSPSENFDIRLCRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCN 647 (863)
Q Consensus 579 ~vC~~~~~e~~~l~l~r~~d~~~~~~~~~~Ll~CdqC~rayHv~CL~p~g~~~L~evP~g~WfCc~~C~ 647 (863)
..|+ ...+....++|+.|+-+||.+|..| +++.+|.+.|+| +-|.
T Consensus 72 e~c~-------------------~~gD~~kf~~Ck~cDvsyh~yc~~P----~~~~v~sg~~~c-kk~~ 116 (694)
T KOG4443|consen 72 EACG-------------------TTGDPKKFLLCKRCDVSYHCYCQKP----PNDKVPSGPWLC-KKCT 116 (694)
T ss_pred eecc-------------------ccCCcccccccccccccccccccCC----ccccccCccccc-HHHH
Confidence 8882 2346788999999999999999987 889999999999 4443
No 46
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=98.29 E-value=1.9e-06 Score=85.15 Aligned_cols=76 Identities=28% Similarity=0.372 Sum_probs=64.9
Q ss_pred eEEEEEEEEE-ecC----eeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCc-cEEEecch---hhHHHHHHhccCcE
Q 002950 759 VVVSAGLLRI-FGR----EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNV-ENLVLPAA---EKAESIWTKKFGFR 829 (863)
Q Consensus 759 ~vV~aA~lri-~g~----~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV-~~LvL~A~---~~A~~~w~~kfGF~ 829 (863)
+++|....++ .+. ..++|-.+||+|+|||+|+|++|+..+++.+...|. +.++|... ..|+.+|+ ++||+
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~-~~GF~ 150 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYR-KLGFE 150 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHH-HcCCE
Confidence 4777777753 332 278999999999999999999999999999999997 88888877 57999999 99999
Q ss_pred EcCHHH
Q 002950 830 KMSRER 835 (863)
Q Consensus 830 ~i~~~~ 835 (863)
.+....
T Consensus 151 ~~~~~~ 156 (177)
T COG0456 151 VVKIRK 156 (177)
T ss_pred EEeeeh
Confidence 987754
No 47
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.29 E-value=2.6e-07 Score=110.28 Aligned_cols=165 Identities=21% Similarity=0.324 Sum_probs=98.5
Q ss_pred CccccccccccCCCceeecCCCCCcccccccCCC--CCCCCCCCCcccccCCCCCccCcc--------------------
Q 002950 505 GGSDDMCHVCGDGENLLLCNGCPLAFHAACLDPL--LIPESGWRCPNCRQGHSSSMSRSV-------------------- 562 (863)
Q Consensus 505 ~~~dd~C~vCgdgG~Ll~Cd~C~~sfH~~Cl~p~--~vp~g~W~C~~C~~~~~~e~~dpI-------------------- 562 (863)
..+...|.+|+++|++++|+.|+.+||..|++++ ..|.+.|.|++|..........+|
T Consensus 44 ~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~~~~~ 123 (696)
T KOG0383|consen 44 DAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKNAGKIEKILGWRWKPTPKPREGNQGVIS 123 (696)
T ss_pred hhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCCcccccccceeEecCCCCccccCcCccC
Confidence 3456789999999999999999999999999986 566677999999553332211111
Q ss_pred --c----ccC--CCCCCCccccccccccCCCCc----c------chhhhcccCC-CccccCCCCceeeccCcccccCccc
Q 002950 563 --D----LKG--GLEAPGAEVGGCVICRLSPSE----N------FDIRLCRSHD-FSAATFDDRTVIYCDQCEKEFHVGC 623 (863)
Q Consensus 563 --r----~~r--~~k~~~~e~~~C~vC~~~~~e----~------~~l~l~r~~d-~~~~~~~~~~Ll~CdqC~rayHv~C 623 (863)
+ ..| .++......+.|..+.....+ . .+.+...... -+.+..+.+.+..|+.|++.||..|
T Consensus 124 ~~~~~~~~~re~~vk~qg~s~~~c~~~~e~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~a~~~~r~~~~~ 203 (696)
T KOG0383|consen 124 PRRSNGIVEREFFVKWQGLSYWHCSWKSELLLQNPLNTLPVELQRKHDTDQKPEAEIGVTRDKGKLVPYADLEERFLLYG 203 (696)
T ss_pred CcccccchhhhcccccccCCccchhHHHHHHhhhhcccchHhhhhhhhcccCccccccccccCccccccccchhhhhhee
Confidence 0 000 011111122335444111000 0 0001111111 1113446777888888999999999
Q ss_pred cccCCCCCCcCCCCCCceecCCchhhHHhhhhhhcCCCccCCCCccccccccccccCccccCCcchhhhhhccccccchh
Q 002950 624 LRKNGLCDLKEIPKDKWFCCDDCNRIHAALQDFVSNRAQTIPASSLSTINRKHIEKGILFDGTMNDVQWQMLKKAQCFEE 703 (863)
Q Consensus 624 L~p~g~~~L~evP~g~WfCc~~C~~i~~~Lq~ll~~g~~~l~~~ll~~i~kk~e~kg~~~~~~~y~vkW~lLs~k~~swe 703 (863)
+++ ....++...|-| ..| ++ ...|.|+|+.|+|..++|+
T Consensus 204 iKp----e~~~i~rii~~~-~s~--------------------------------~~----~~~~~Vk~k~l~~d~~~~e 242 (696)
T KOG0383|consen 204 IKP----EWMPIARIINRR-SSQ--------------------------------KG----ATDYLVKWKELSYDEQEWE 242 (696)
T ss_pred ccc----cccccchhhhhh-ccc--------------------------------cc----ceeeEeeeccCCccccCCC
Confidence 987 444555556665 222 11 3568899999999999988
Q ss_pred hhcchhh
Q 002950 704 KEKSLLS 710 (863)
Q Consensus 704 ~~~~lLs 710 (863)
.+.....
T Consensus 243 ~~~~~ip 249 (696)
T KOG0383|consen 243 VEDPDIP 249 (696)
T ss_pred cCCCCcc
Confidence 5544443
No 48
>PRK10514 putative acetyltransferase; Provisional
Probab=98.27 E-value=2.7e-06 Score=81.76 Aligned_cols=86 Identities=19% Similarity=0.174 Sum_probs=63.7
Q ss_pred EeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEcCHH
Q 002950 755 TVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMSRE 834 (863)
Q Consensus 755 ~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i~~~ 834 (863)
..++++||.+.+.. .++..++|.++|||||+|++||+.+++.+.. +...+...-..|..||+ |+||+..+..
T Consensus 56 ~~~~~~iG~~~~~~-----~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~--i~~~v~~~N~~a~~~ye-k~Gf~~~~~~ 127 (145)
T PRK10514 56 DERDQPVGFMLLSG-----GHMEALFVDPDVRGCGVGRMLVEHALSLHPE--LTTDVNEQNEQAVGFYK-KMGFKVTGRS 127 (145)
T ss_pred ecCCcEEEEEEEec-----CcEeEEEECHHhccCCHHHHHHHHHHHhccc--cEEEeecCCHHHHHHHH-HCCCEEeccc
Confidence 46799999887742 3466899999999999999999999997643 44444555578999999 9999998876
Q ss_pred HHHhhhccceeeee
Q 002950 835 RLLKYQRDFQLTIF 848 (863)
Q Consensus 835 ~~~~~~~~~~l~~f 848 (863)
.....-..++++.|
T Consensus 128 ~~~~~~~~~~~~~~ 141 (145)
T PRK10514 128 EVDDQGRPYPLLHL 141 (145)
T ss_pred ccCCCCCccceEEE
Confidence 54433222444443
No 49
>PHA01807 hypothetical protein
Probab=98.27 E-value=2.4e-06 Score=85.33 Aligned_cols=83 Identities=10% Similarity=0.106 Sum_probs=66.0
Q ss_pred cEEEEEEeCCeEEEEEEEEEecC----eeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHH
Q 002950 749 MYSVILTVKSVVVSAGLLRIFGR----EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESI 821 (863)
Q Consensus 749 fy~~vl~~~~~vV~aA~lri~g~----~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~---~~A~~~ 821 (863)
.+.++++.++++||.+.+..... .+.+|..|.|.++|||+|+|++||+.+++.++..|+..|.|... ..|..+
T Consensus 53 ~~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~ 132 (153)
T PHA01807 53 RTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIH 132 (153)
T ss_pred ceEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHH
Confidence 44466678999999999865432 34445568999999999999999999999999999999988776 477899
Q ss_pred HHhccCcEEcCHH
Q 002950 822 WTKKFGFRKMSRE 834 (863)
Q Consensus 822 w~~kfGF~~i~~~ 834 (863)
|+ .|.+.+.+
T Consensus 133 y~---~~~~~~~~ 142 (153)
T PHA01807 133 YR---RVKPYGQE 142 (153)
T ss_pred HH---hcCccCCc
Confidence 99 44555543
No 50
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.25 E-value=6.6e-07 Score=104.02 Aligned_cols=45 Identities=40% Similarity=0.974 Sum_probs=37.6
Q ss_pred ccccccccCCCceeecCCCCCcccccccCCCCCCC---CCCCCccccc
Q 002950 508 DDMCHVCGDGENLLLCNGCPLAFHAACLDPLLIPE---SGWRCPNCRQ 552 (863)
Q Consensus 508 dd~C~vCgdgG~Ll~Cd~C~~sfH~~Cl~p~~vp~---g~W~C~~C~~ 552 (863)
.+.|.+|..+|++++|+.|+.+||..|.+++.-|+ +.|.|..|..
T Consensus 47 ~ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~ 94 (613)
T KOG4299|consen 47 ATSCGICKSGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPK 94 (613)
T ss_pred hhhcchhhhcCCccccccCccccchhccCcccCcccccccccccCCCc
Confidence 57899999999999999999999999999864343 5677777754
No 51
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.24 E-value=3.9e-06 Score=99.45 Aligned_cols=85 Identities=15% Similarity=0.168 Sum_probs=68.8
Q ss_pred ccEEEEEEe--CCeEEEEEEEEEe------cCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecch---h
Q 002950 748 GMYSVILTV--KSVVVSAGLLRIF------GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---E 816 (863)
Q Consensus 748 Gfy~~vl~~--~~~vV~aA~lri~------g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~---~ 816 (863)
+.+.+|.+. +|++||.+.+..+ ....++|-.|+|+++|||||+|++||..+++.++..|+.++.|... .
T Consensus 122 ~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~ 201 (547)
T TIGR03103 122 AITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNE 201 (547)
T ss_pred CceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCH
Confidence 445555553 6999999875322 1234788899999999999999999999999999999999876543 6
Q ss_pred hHHHHHHhccCcEEcCH
Q 002950 817 KAESIWTKKFGFRKMSR 833 (863)
Q Consensus 817 ~A~~~w~~kfGF~~i~~ 833 (863)
.|+.||+ |+||+.++.
T Consensus 202 ~Ai~fY~-klGf~~~~~ 217 (547)
T TIGR03103 202 QAIALYE-KLGFRRIPV 217 (547)
T ss_pred HHHHHHH-HCCCEEeeE
Confidence 8999999 999998754
No 52
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=98.16 E-value=1.3e-05 Score=77.99 Aligned_cols=88 Identities=19% Similarity=0.228 Sum_probs=71.6
Q ss_pred cccEEEEEEeCCeEEEEEEEEE------ecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhC-CccEEEecchh---
Q 002950 747 GGMYSVILTVKSVVVSAGLLRI------FGREVAELPLVATCREYQGKGCFQALFSCIERLLCSL-NVENLVLPAAE--- 816 (863)
Q Consensus 747 ~Gfy~~vl~~~~~vV~aA~lri------~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~l-gV~~LvL~A~~--- 816 (863)
.+.+.+|++.||++||.+.+.- ..+..+.+-.+++.++|||||+|+.+|.++.+.+... ++++|++....
T Consensus 46 ~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~ 125 (152)
T PF13523_consen 46 PGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNT 125 (152)
T ss_dssp TTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-H
T ss_pred CCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCH
Confidence 5677888899999999887742 2455678899999999999999999999999988876 89999998874
Q ss_pred hHHHHHHhccCcEEcCHHH
Q 002950 817 KAESIWTKKFGFRKMSRER 835 (863)
Q Consensus 817 ~A~~~w~~kfGF~~i~~~~ 835 (863)
-|+.+|+ |+||+.++.-+
T Consensus 126 ~~~~~~~-k~GF~~~g~~~ 143 (152)
T PF13523_consen 126 RAIRLYE-KAGFRKVGEFE 143 (152)
T ss_dssp HHHHHHH-HTT-EEEEEEE
T ss_pred HHHHHHH-HcCCEEeeEEE
Confidence 8899999 99999987654
No 53
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=98.15 E-value=7e-07 Score=104.58 Aligned_cols=50 Identities=32% Similarity=0.871 Sum_probs=44.2
Q ss_pred CccccccccccC-----CCceeecCCCCCcccccccCCCCCCCCCCCCcccccCC
Q 002950 505 GGSDDMCHVCGD-----GENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQGH 554 (863)
Q Consensus 505 ~~~dd~C~vCgd-----gG~Ll~Cd~C~~sfH~~Cl~p~~vp~g~W~C~~C~~~~ 554 (863)
-+++..|.+|.. +.+|++||.|....|+.|+|+..+|+|.|.|..|..+.
T Consensus 268 ~dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~ 322 (893)
T KOG0954|consen 268 YDEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGI 322 (893)
T ss_pred ccccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccccC
Confidence 357788999974 35999999999999999999999999999999997643
No 54
>PRK01346 hypothetical protein; Provisional
Probab=98.14 E-value=7.3e-06 Score=93.21 Aligned_cols=81 Identities=19% Similarity=0.166 Sum_probs=69.4
Q ss_pred EEEEEeCCeEEEEEEEEEe------cC--eeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHH
Q 002950 751 SVILTVKSVVVSAGLLRIF------GR--EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIW 822 (863)
Q Consensus 751 ~~vl~~~~~vV~aA~lri~------g~--~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w 822 (863)
.++++.++++||.+.+..+ +. ..+.|-.|||.|+|||||+|++||..+++.+++.|+..++|.+.. ..||
T Consensus 49 ~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~Y 126 (411)
T PRK01346 49 TLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGIY 126 (411)
T ss_pred eEEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhhH
Confidence 4556789999999987643 32 478999999999999999999999999999999999998888765 4799
Q ss_pred HhccCcEEcCHH
Q 002950 823 TKKFGFRKMSRE 834 (863)
Q Consensus 823 ~~kfGF~~i~~~ 834 (863)
. +|||......
T Consensus 127 ~-r~Gf~~~~~~ 137 (411)
T PRK01346 127 G-RFGYGPATYS 137 (411)
T ss_pred h-hCCCeeccce
Confidence 9 9999988764
No 55
>PRK10562 putative acetyltransferase; Provisional
Probab=98.13 E-value=7.3e-06 Score=79.39 Aligned_cols=78 Identities=12% Similarity=0.085 Sum_probs=60.3
Q ss_pred EEEEEeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEE
Q 002950 751 SVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRK 830 (863)
Q Consensus 751 ~~vl~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~ 830 (863)
.+++..++++||.+.+... ..+-.++|.++|||+|||+.||..+++.+..+.+ .+...-..|..||+ |+||+.
T Consensus 50 ~~v~~~~~~~iG~~~~~~~----~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~--~v~~~N~~s~~~y~-k~Gf~~ 122 (145)
T PRK10562 50 TWVWEEDGKLLGFVSVLEG----RFVGALFVAPKAVRRGIGKALMQHVQQRYPHLSL--EVYQKNQRAVNFYH-AQGFRI 122 (145)
T ss_pred EEEEEECCEEEEEEEEeec----cEEEEEEECHHHcCCCHHHHHHHHHHhhCCeEEE--EEEcCChHHHHHHH-HCCCEE
Confidence 3455678999999887432 3677899999999999999999999997654322 23344568899999 999999
Q ss_pred cCHHH
Q 002950 831 MSRER 835 (863)
Q Consensus 831 i~~~~ 835 (863)
++...
T Consensus 123 ~~~~~ 127 (145)
T PRK10562 123 VDSAW 127 (145)
T ss_pred ccccc
Confidence 98743
No 56
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.10 E-value=1.4e-05 Score=63.45 Aligned_cols=61 Identities=25% Similarity=0.230 Sum_probs=55.1
Q ss_pred EEEEeCCeEEEEEEEEEec--CeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEe
Q 002950 752 VILTVKSVVVSAGLLRIFG--REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 812 (863)
Q Consensus 752 ~vl~~~~~vV~aA~lri~g--~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL 812 (863)
+++..++++||.+.+.... ...+++-.++|+++|||+|+|+.||..+.+.+...|++++.+
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 3456789999999998876 478999999999999999999999999999999999999886
No 57
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=98.08 E-value=1.7e-05 Score=79.93 Aligned_cols=83 Identities=24% Similarity=0.215 Sum_probs=68.4
Q ss_pred EEEEEEeCCeEEEEEEEEEec--CeeEEEeeeeeeccccccChhHHHHHHHHHHHh-hCCccEEEecch---hhHHHHHH
Q 002950 750 YSVILTVKSVVVSAGLLRIFG--REVAELPLVATCREYQGKGCFQALFSCIERLLC-SLNVENLVLPAA---EKAESIWT 823 (863)
Q Consensus 750 y~~vl~~~~~vV~aA~lri~g--~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~-~lgV~~LvL~A~---~~A~~~w~ 823 (863)
+.+++..+|++||.+.+.... ...+++- +++.++|||+|+|+.|+..+.+.+. .+|+++|++... ..|..+|+
T Consensus 58 ~~~~i~~~g~~iG~~~~~~~~~~~~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~ye 136 (186)
T PRK15130 58 RRFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYR 136 (186)
T ss_pred cEEEEEECCEEEEEEEEEeecCCCCeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHH
Confidence 345567899999999886654 2466774 8999999999999999999999876 689999988754 57899999
Q ss_pred hccCcEEcCHH
Q 002950 824 KKFGFRKMSRE 834 (863)
Q Consensus 824 ~kfGF~~i~~~ 834 (863)
|+||+..+.-
T Consensus 137 -k~GF~~~~~~ 146 (186)
T PRK15130 137 -KLGFEVEGEL 146 (186)
T ss_pred -HCCCEEEEEE
Confidence 9999998663
No 58
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.07 E-value=1.1e-05 Score=94.83 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=64.9
Q ss_pred CCeEEEEEEEEEecCee--------E---EEeeeee--------eccccccChhHHHHHHHHHHHhhCCccEEEecchhh
Q 002950 757 KSVVVSAGLLRIFGREV--------A---ELPLVAT--------CREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEK 817 (863)
Q Consensus 757 ~~~vV~aA~lri~g~~~--------A---Eip~VAT--------~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~ 817 (863)
++.+||-.++|....+. | ||-..++ .++|||+|||++||+++|+.|++.|++.|.|.+...
T Consensus 422 ~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~~~ 501 (522)
T TIGR01211 422 NDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISGIG 501 (522)
T ss_pred CCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeCch
Confidence 57899999999876532 2 4444433 589999999999999999999999999999999999
Q ss_pred HHHHHHhccCcEEcCH
Q 002950 818 AESIWTKKFGFRKMSR 833 (863)
Q Consensus 818 A~~~w~~kfGF~~i~~ 833 (863)
|..||. |+||...++
T Consensus 502 A~~FY~-klGf~~~g~ 516 (522)
T TIGR01211 502 VREYYR-KLGYELDGP 516 (522)
T ss_pred HHHHHH-HCCCEEEcc
Confidence 999999 999998765
No 59
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.04 E-value=1.6e-05 Score=88.09 Aligned_cols=82 Identities=12% Similarity=0.070 Sum_probs=69.0
Q ss_pred ccEEEEEEe---CCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecch-----hhHH
Q 002950 748 GMYSVILTV---KSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA-----EKAE 819 (863)
Q Consensus 748 Gfy~~vl~~---~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~-----~~A~ 819 (863)
..|++.+.. ++.+||.+.++.. .+.++|-.+++++.|||+|+|++||..+++.++..|+.+|+|... ..|+
T Consensus 230 ~~~~~~~~d~~gd~givG~~~~~~~-~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~ 308 (320)
T TIGR01686 230 EIVTVSMSDRFGDSGIIGIFVFEKK-EGNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFL 308 (320)
T ss_pred CEEEEEEEecCCCCceEEEEEEEec-CCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHH
Confidence 345554433 6789999998764 456899999999999999999999999999999999999988643 5799
Q ss_pred HHHHhccCcEEc
Q 002950 820 SIWTKKFGFRKM 831 (863)
Q Consensus 820 ~~w~~kfGF~~i 831 (863)
.||+ ++||...
T Consensus 309 ~fY~-~~GF~~~ 319 (320)
T TIGR01686 309 SFYE-QIGFEDE 319 (320)
T ss_pred HHHH-HcCCccC
Confidence 9999 9999854
No 60
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=98.03 E-value=1.3e-05 Score=85.68 Aligned_cols=84 Identities=23% Similarity=0.296 Sum_probs=70.6
Q ss_pred cEEEEEEeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCC-ccEEEecch-hhHHHHHHhcc
Q 002950 749 MYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLN-VENLVLPAA-EKAESIWTKKF 826 (863)
Q Consensus 749 fy~~vl~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lg-V~~LvL~A~-~~A~~~w~~kf 826 (863)
+.++.+..+|+||+.|...-.+...|+|-.|+|.|+|||+||+.+|+.++-..+-+-| ...|+..+. +.|..+|. |+
T Consensus 177 ~~~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~-ri 255 (268)
T COG3393 177 SRTYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQ-RI 255 (268)
T ss_pred eeEEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHH-Hh
Confidence 4555566777999999999999999999999999999999999999999876655555 445666544 78899999 99
Q ss_pred CcEEcCH
Q 002950 827 GFRKMSR 833 (863)
Q Consensus 827 GF~~i~~ 833 (863)
||+.+++
T Consensus 256 GF~~~g~ 262 (268)
T COG3393 256 GFREIGE 262 (268)
T ss_pred CCeecce
Confidence 9999874
No 61
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=98.02 E-value=3.4e-05 Score=74.79 Aligned_cols=81 Identities=19% Similarity=0.149 Sum_probs=67.2
Q ss_pred EEEEeCCeEEEEEEEEEec--CeeEEEeeeeeeccccccChhHHHHHHHHHHHh-hCCccEEEecc---hhhHHHHHHhc
Q 002950 752 VILTVKSVVVSAGLLRIFG--REVAELPLVATCREYQGKGCFQALFSCIERLLC-SLNVENLVLPA---AEKAESIWTKK 825 (863)
Q Consensus 752 ~vl~~~~~vV~aA~lri~g--~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~-~lgV~~LvL~A---~~~A~~~w~~k 825 (863)
+++..+|++||.+.+.... ...+++-.. +.+.+| +|||+.++.++++.+. .+|+.+|.+.. -..|+.+|+ |
T Consensus 54 ~~~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~-k 130 (156)
T TIGR03585 54 WIVCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYE-K 130 (156)
T ss_pred EEEEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHH-H
Confidence 3446789999999997766 456788655 889999 9999999999999987 58999998754 468999999 9
Q ss_pred cCcEEcCHHH
Q 002950 826 FGFRKMSRER 835 (863)
Q Consensus 826 fGF~~i~~~~ 835 (863)
+||+.++...
T Consensus 131 ~Gf~~~g~~~ 140 (156)
T TIGR03585 131 FGFEREGVFR 140 (156)
T ss_pred cCCeEeeeeh
Confidence 9999988643
No 62
>smart00258 SAND SAND domain.
Probab=97.96 E-value=3.9e-06 Score=73.64 Aligned_cols=63 Identities=25% Similarity=0.346 Sum_probs=56.3
Q ss_pred eEE-EeCCEEeeeeEEecCceecCCC-CccccccccccccCccccCCCCcceEccCCcchhHHHHH
Q 002950 432 LTY-IVKGQRLRFGCKQGNGIVCDCC-NKEISPSQFEAHAGMAARRQPYRHIYTSNGMTLHDIAIS 495 (863)
Q Consensus 432 v~Y-~~kGq~ll~G~~qG~gI~C~cC-~~~~Sps~FE~hAG~~~~R~Py~~I~~~~G~sL~dl~~~ 495 (863)
|++ .++|.++++.+++|...+|+.+ ++|+||++||.+||+...++|..+|. .+|.+|..++..
T Consensus 5 V~CG~~~g~L~~~kf~~G~~~kCI~~~~~~~TP~eFe~~~g~~~~K~WK~sIR-~~g~~Lr~L~~~ 69 (73)
T smart00258 5 VTCGTVKGILYKKKFKCGISVKCIQYEDKWFTPKEFEIEGGKGKSKDWKRSIR-CGGSSLRTLMEN 69 (73)
T ss_pred eeeCCeeeeeeHhhhhcCcccCCccCCCEEEChHHHHhhcCCcccCCcchhee-ECCccHHHHHHc
Confidence 666 5789999999999988999976 78999999999999999999999998 899999988753
No 63
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.96 E-value=2.1e-06 Score=90.95 Aligned_cols=78 Identities=32% Similarity=0.748 Sum_probs=57.3
Q ss_pred eecCCCCccccccccccccCccccCCCCcceEccCCcchhHHHHHhhccCcccCCccccccccccC---CCceeecCCCC
Q 002950 451 IVCDCCNKEISPSQFEAHAGMAARRQPYRHIYTSNGMTLHDIAISLAMGQRRTTGGSDDMCHVCGD---GENLLLCNGCP 527 (863)
Q Consensus 451 I~C~cC~~~~Sps~FE~hAG~~~~R~Py~~I~~~~G~sL~dl~~~l~~~~~~~~~~~dd~C~vCgd---gG~Ll~Cd~C~ 527 (863)
+-|+-|++.-+||...--+.|...-+-|+.-+ ..-..|.+||. ..+|++||.|+
T Consensus 247 vscsdcgrsghpsclqft~nm~~avk~yrwqc-----------------------ieck~csicgtsenddqllfcddcd 303 (336)
T KOG1244|consen 247 VSCSDCGRSGHPSCLQFTANMIAAVKTYRWQC-----------------------IECKYCSICGTSENDDQLLFCDDCD 303 (336)
T ss_pred cchhhcCCCCCcchhhhhHHHHHHHHhheeee-----------------------eecceeccccCcCCCceeEeecccC
Confidence 56888888888776655554443333333322 23457888984 35899999999
Q ss_pred CcccccccCCC--CCCCCCCCCcccc
Q 002950 528 LAFHAACLDPL--LIPESGWRCPNCR 551 (863)
Q Consensus 528 ~sfH~~Cl~p~--~vp~g~W~C~~C~ 551 (863)
|.||.+||.|+ ..|+|.|.|.-|.
T Consensus 304 rgyhmyclsppm~eppegswsc~KOG 329 (336)
T KOG1244|consen 304 RGYHMYCLSPPMVEPPEGSWSCHLCL 329 (336)
T ss_pred CceeeEecCCCcCCCCCCchhHHHHH
Confidence 99999999997 6789999999885
No 64
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=97.90 E-value=2.1e-05 Score=79.06 Aligned_cols=85 Identities=15% Similarity=0.200 Sum_probs=67.3
Q ss_pred EEEEEe--CCeEEEEEEEEEe-cC-eeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhcc
Q 002950 751 SVILTV--KSVVVSAGLLRIF-GR-EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKF 826 (863)
Q Consensus 751 ~~vl~~--~~~vV~aA~lri~-g~-~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kf 826 (863)
+++|.. +.+|||-++|--. .+ ..--|..|.|.+..||||+||.||+..|..++..|++.+.|.+..| ..||+ ++
T Consensus 57 sL~Ll~E~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ-~~FYe-~l 134 (225)
T KOG3397|consen 57 SLLLLNEENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQ-CRFYE-SL 134 (225)
T ss_pred eeeeecccccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccc-hhhhh-hh
Confidence 344443 4666776665333 33 5667889999999999999999999999999999999999988865 68999 99
Q ss_pred CcEEcCHHHHH
Q 002950 827 GFRKMSRERLL 837 (863)
Q Consensus 827 GF~~i~~~~~~ 837 (863)
||+.-+.-+..
T Consensus 135 GYe~c~Pi~~~ 145 (225)
T KOG3397|consen 135 GYEKCDPIVHS 145 (225)
T ss_pred cccccCceecc
Confidence 99987775433
No 65
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=97.85 E-value=6.8e-05 Score=76.20 Aligned_cols=84 Identities=11% Similarity=0.228 Sum_probs=67.5
Q ss_pred cEEEEEEeCCeEEEEEEEEEecC---eeEEEeeeeeeccccccChhHHHHHHHHHHHhh-CCccEEEecch---hhHHHH
Q 002950 749 MYSVILTVKSVVVSAGLLRIFGR---EVAELPLVATCREYQGKGCFQALFSCIERLLCS-LNVENLVLPAA---EKAESI 821 (863)
Q Consensus 749 fy~~vl~~~~~vV~aA~lri~g~---~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~-lgV~~LvL~A~---~~A~~~ 821 (863)
.|.++...++++||.+.+..... ..+||- +.+.++|||||||+.++.++.+.+.. +|+++|.+.+. .-|..+
T Consensus 77 ~~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l 155 (194)
T PRK10809 77 YFALLDPDEKEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDL 155 (194)
T ss_pred EEEEEECCCCeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHH
Confidence 34444445789999999876543 345655 56799999999999999999999876 89999998886 478899
Q ss_pred HHhccCcEEcCHH
Q 002950 822 WTKKFGFRKMSRE 834 (863)
Q Consensus 822 w~~kfGF~~i~~~ 834 (863)
++ |+||+..+..
T Consensus 156 ~e-k~Gf~~~g~~ 167 (194)
T PRK10809 156 LA-RLGFEKEGYA 167 (194)
T ss_pred HH-HCCCcEEeee
Confidence 99 9999987653
No 66
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.82 E-value=6.3e-06 Score=97.04 Aligned_cols=40 Identities=38% Similarity=1.070 Sum_probs=36.1
Q ss_pred CCceeeccCcccc-cCccccccCCCCCCcCCCCCCceecCCchhhH
Q 002950 606 DRTVIYCDQCEKE-FHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIH 650 (863)
Q Consensus 606 ~~~Ll~CdqC~ra-yHv~CL~p~g~~~L~evP~g~WfCc~~C~~i~ 650 (863)
+..||+||.|..+ ||++||+| +|.++|-+.|+| ..|..+.
T Consensus 227 EdVLLLCDsCN~~~YH~YCLDP----dl~eiP~~eWYC-~NC~dL~ 267 (1134)
T KOG0825|consen 227 EDVLLLCDSCNKVYYHVYCLDP----DLSESPVNEWYC-TNCSLLE 267 (1134)
T ss_pred HHhheeecccccceeeccccCc----ccccccccceec-Ccchhhh
Confidence 5679999999999 99999997 899999999999 8998553
No 67
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.81 E-value=6.2e-06 Score=100.31 Aligned_cols=127 Identities=20% Similarity=0.335 Sum_probs=86.6
Q ss_pred ccccccccccCCCceeecCCCCCcccccccCCC--CCCCCCCCCcccccCCCCCcc----------CcccccCCCCCCC-
Q 002950 506 GSDDMCHVCGDGENLLLCNGCPLAFHAACLDPL--LIPESGWRCPNCRQGHSSSMS----------RSVDLKGGLEAPG- 572 (863)
Q Consensus 506 ~~dd~C~vCgdgG~Ll~Cd~C~~sfH~~Cl~p~--~vp~g~W~C~~C~~~~~~e~~----------dpIr~~r~~k~~~- 572 (863)
.-+|.|.+|.+.|.++||..|++.||..|+.++ .+|+..|.|.-|...-...++ +.||...+..+..
T Consensus 342 ~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~~~~iR~~~iG~dr~g 421 (1414)
T KOG1473|consen 342 EYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKNVDSIRHTPIGRDRYG 421 (1414)
T ss_pred eecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhcccceeccCCCcCccc
Confidence 456899999999999999999999999999987 788999999999752222221 1122221111100
Q ss_pred c----cccccccccCCCCccchhhhcccCCCccccCCCCceeeccC-cccccCc-cccccCCCCCCcCCCCCCceecCCc
Q 002950 573 A----EVGGCVICRLSPSENFDIRLCRSHDFSAATFDDRTVIYCDQ-CEKEFHV-GCLRKNGLCDLKEIPKDKWFCCDDC 646 (863)
Q Consensus 573 ~----e~~~C~vC~~~~~e~~~l~l~r~~d~~~~~~~~~~Ll~Cdq-C~rayHv-~CL~p~g~~~L~evP~g~WfCc~~C 646 (863)
. ....|.+| .-+++++.|+. |++.||. .||...- --..++.+-|+| .+|
T Consensus 422 r~ywfi~rrl~Ie----------------------~~det~l~yysT~pqly~ll~cLd~~~--~e~~L~d~i~~~-~ee 476 (1414)
T KOG1473|consen 422 RKYWFISRRLRIE----------------------GMDETLLWYYSTCPQLYHLLRCLDRTY--VEMYLCDGIWER-REE 476 (1414)
T ss_pred cchhceeeeeEEe----------------------cCCCcEEEEecCcHHHHHHHHHhchHH--HHHhhccchhhh-HHH
Confidence 0 01135565 24678999997 9999998 9997321 223678899999 788
Q ss_pred hhhHHhhhhhh
Q 002950 647 NRIHAALQDFV 657 (863)
Q Consensus 647 ~~i~~~Lq~ll 657 (863)
-.-.++|.--+
T Consensus 477 ~~rqM~lT~~l 487 (1414)
T KOG1473|consen 477 IIRQMGLTEEL 487 (1414)
T ss_pred HHHhccchhhh
Confidence 76555444333
No 68
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=97.81 E-value=6.6e-05 Score=76.40 Aligned_cols=83 Identities=24% Similarity=0.263 Sum_probs=68.4
Q ss_pred EEEEEeCCeEEEEEEEEEe--c---CeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhc
Q 002950 751 SVILTVKSVVVSAGLLRIF--G---REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKK 825 (863)
Q Consensus 751 ~~vl~~~~~vV~aA~lri~--g---~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~k 825 (863)
.+|...+|++|+..++-.. + ..+.=|--+||+++|||||+|++||...++.|+.+|...+++--. ..+|. +
T Consensus 48 slVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGd---p~YY~-r 123 (171)
T COG3153 48 SLVAEDDGEVVGHILFSPVTVGGEELGWLGLAPLAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGD---PTYYS-R 123 (171)
T ss_pred eEEEeeCCEEEEEEEEeEEEecCcccceEEEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecC---ccccc-c
Confidence 3455778999998876442 2 145567789999999999999999999999999999999998877 56886 9
Q ss_pred cCcEEcCHHHHH
Q 002950 826 FGFRKMSRERLL 837 (863)
Q Consensus 826 fGF~~i~~~~~~ 837 (863)
|||+......+.
T Consensus 124 fGF~~~~~~~l~ 135 (171)
T COG3153 124 FGFEPAAGAKLY 135 (171)
T ss_pred cCcEEccccccc
Confidence 999999877644
No 69
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=97.78 E-value=0.00015 Score=72.68 Aligned_cols=81 Identities=10% Similarity=0.094 Sum_probs=66.1
Q ss_pred EEEEeCCeEEEEEEEEEecC--eeEEEeeeeeeccccccChhHHHHHHHHHHHh-hCCccEEEecch---hhHHHHHHhc
Q 002950 752 VILTVKSVVVSAGLLRIFGR--EVAELPLVATCREYQGKGCFQALFSCIERLLC-SLNVENLVLPAA---EKAESIWTKK 825 (863)
Q Consensus 752 ~vl~~~~~vV~aA~lri~g~--~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~-~lgV~~LvL~A~---~~A~~~w~~k 825 (863)
+++..++++||.+.++.... ..++|-. .+.++|||||||+.++.++.+.+. .+|+++|.+.+. ..+..+++ |
T Consensus 70 ~~i~~~~~~iG~~~l~~~~~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~e-k 147 (179)
T PRK10151 70 FMIFKEDELIGVLSFNRIEPLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVAL-R 147 (179)
T ss_pred EEEEECCEEEEEEEEEeeccCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHH-H
Confidence 33456899999999876543 5688865 689999999999999999999876 578999887755 46889999 9
Q ss_pred cCcEEcCHH
Q 002950 826 FGFRKMSRE 834 (863)
Q Consensus 826 fGF~~i~~~ 834 (863)
+||+..+..
T Consensus 148 ~Gf~~~g~~ 156 (179)
T PRK10151 148 NGFTLEGCL 156 (179)
T ss_pred CCCEEEeEe
Confidence 999987764
No 70
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=97.74 E-value=0.0002 Score=67.95 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=64.6
Q ss_pred ccEEEEEEe--CCeEEEEEEEEEe--cCeeEEEeeeeeeccccccChhHHHHHHHHHHH-hhCCccEEEecch---hhHH
Q 002950 748 GMYSVILTV--KSVVVSAGLLRIF--GREVAELPLVATCREYQGKGCFQALFSCIERLL-CSLNVENLVLPAA---EKAE 819 (863)
Q Consensus 748 Gfy~~vl~~--~~~vV~aA~lri~--g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l-~~lgV~~LvL~A~---~~A~ 819 (863)
|.+.+++.. ++++||...++.. ....+||. +.+.++|||+|+|+.++..+...+ ..+|+.+|..... ..+.
T Consensus 55 ~~~~~~i~~~~~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~ 133 (142)
T PF13302_consen 55 GYYYFAIEDKDDGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASR 133 (142)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHH
T ss_pred cceEEEEEeccCCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHH
Confidence 355555554 4579999999554 46889999 668999999999999999999999 7999999988776 4677
Q ss_pred HHHHhccCcE
Q 002950 820 SIWTKKFGFR 829 (863)
Q Consensus 820 ~~w~~kfGF~ 829 (863)
.+++ |+||+
T Consensus 134 ~~~~-k~GF~ 142 (142)
T PF13302_consen 134 RLLE-KLGFE 142 (142)
T ss_dssp HHHH-HTT-E
T ss_pred HHHH-HcCCC
Confidence 8888 99996
No 71
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.69 E-value=9.8e-06 Score=86.38 Aligned_cols=83 Identities=23% Similarity=0.574 Sum_probs=59.8
Q ss_pred EecCceecCCCCccccccccccccCccccCCCCcceEccCCcchhHHHHHhhccCcccCCccccccccccCC---Cceee
Q 002950 446 KQGNGIVCDCCNKEISPSQFEAHAGMAARRQPYRHIYTSNGMTLHDIAISLAMGQRRTTGGSDDMCHVCGDG---ENLLL 522 (863)
Q Consensus 446 ~qG~gI~C~cC~~~~Sps~FE~hAG~~~~R~Py~~I~~~~G~sL~dl~~~l~~~~~~~~~~~dd~C~vCgdg---G~Ll~ 522 (863)
+..+.|.|..|-...+|+..+......+--+.|.. . --.-..|.+|+.. .++++
T Consensus 275 r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W--------------------~---C~~C~lC~IC~~P~~E~E~~F 331 (381)
T KOG1512|consen 275 RRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFW--------------------K---CSSCELCRICLGPVIESEHLF 331 (381)
T ss_pred hhccceeecccccCCCCcchhcCHHHHhHHhhcch--------------------h---hcccHhhhccCCcccchheec
Confidence 44567999999988888876654332221111111 1 1233578999864 69999
Q ss_pred cCCCCCcccccccCCCCCCCCCCCCc-ccc
Q 002950 523 CNGCPLAFHAACLDPLLIPESGWRCP-NCR 551 (863)
Q Consensus 523 Cd~C~~sfH~~Cl~p~~vp~g~W~C~-~C~ 551 (863)
||.|+|+||..|+|+..+|.|.|.|. +|.
T Consensus 332 CD~CDRG~HT~CVGL~~lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 332 CDVCDRGPHTLCVGLQDLPRGEWICDMRCR 361 (381)
T ss_pred cccccCCCCccccccccccCccchhhhHHH
Confidence 99999999999999999999999998 453
No 72
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.66 E-value=1.8e-05 Score=64.22 Aligned_cols=42 Identities=40% Similarity=1.170 Sum_probs=35.6
Q ss_pred ccccccC---CCceeecCCCCCcccccccCCC----CCCCCCCCCcccc
Q 002950 510 MCHVCGD---GENLLLCNGCPLAFHAACLDPL----LIPESGWRCPNCR 551 (863)
Q Consensus 510 ~C~vCgd---gG~Ll~Cd~C~~sfH~~Cl~p~----~vp~g~W~C~~C~ 551 (863)
+|.+|+. .+.++.|+.|.+.||..|++++ ..+.+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4788875 6799999999999999999996 3345699999995
No 73
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=97.65 E-value=0.00028 Score=73.41 Aligned_cols=86 Identities=17% Similarity=0.164 Sum_probs=61.8
Q ss_pred cccEEEEEEeCC--eEEEEEEEEEec-------------------------------------CeeEEEeeeeeeccccc
Q 002950 747 GGMYSVILTVKS--VVVSAGLLRIFG-------------------------------------REVAELPLVATCREYQG 787 (863)
Q Consensus 747 ~Gfy~~vl~~~~--~vV~aA~lri~g-------------------------------------~~~AEip~VAT~~~~Rg 787 (863)
-+...+++..++ ++++|+.+-..| -.-+.|-||||.|++|+
T Consensus 25 P~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvRIAvhP~~q~ 104 (196)
T PF13718_consen 25 PNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVRIAVHPDLQR 104 (196)
T ss_dssp TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEEEEE-CCC-S
T ss_pred CcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEEEEEChhhhc
Confidence 345667778888 999998886644 13689999999999999
Q ss_pred cChhHHHHHHHHHHH-------------------------hhCCccEEEe--cchhhHHHHHHhccCcEEcCH
Q 002950 788 KGCFQALFSCIERLL-------------------------CSLNVENLVL--PAAEKAESIWTKKFGFRKMSR 833 (863)
Q Consensus 788 qG~gr~L~~~iE~~l-------------------------~~lgV~~LvL--~A~~~A~~~w~~kfGF~~i~~ 833 (863)
+|||++|++.+++.+ +.-+|..|=. .+.++...||. |.||.++-=
T Consensus 105 ~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~-k~gf~pv~l 176 (196)
T PF13718_consen 105 MGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQ-KNGFVPVYL 176 (196)
T ss_dssp SSHHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHH-CTT-EEEEE
T ss_pred CCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHH-HCCcEEEEE
Confidence 999999999999999 5778886543 45688999999 999998754
No 74
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.59 E-value=1.8e-05 Score=64.26 Aligned_cols=41 Identities=34% Similarity=0.929 Sum_probs=31.1
Q ss_pred CCCCceeeccCcccccCccccccCCCCCCcCCCCCCceecCCch
Q 002950 604 FDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCN 647 (863)
Q Consensus 604 ~~~~~Ll~CdqC~rayHv~CL~p~g~~~L~evP~g~WfCc~~C~ 647 (863)
.+++.+|+|+.|.++||..|+.+.. .....+.+.|+| ..|.
T Consensus 9 ~~~~~~i~C~~C~~~~H~~C~~~~~--~~~~~~~~~w~C-~~C~ 49 (51)
T PF00628_consen 9 DDDGDMIQCDSCNRWYHQECVGPPE--KAEEIPSGDWYC-PNCR 49 (51)
T ss_dssp CTTSSEEEBSTTSCEEETTTSTSSH--SHHSHHSSSBSS-HHHH
T ss_pred CCCCCeEEcCCCChhhCcccCCCCh--hhccCCCCcEEC-cCCc
Confidence 3578899999999999999998632 112444569999 6775
No 75
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=97.47 E-value=4.7e-06 Score=75.02 Aligned_cols=62 Identities=31% Similarity=0.396 Sum_probs=50.6
Q ss_pred eEE-EeCCEEeeeeE-EecCceecCCC-CccccccccccccCccccCCCCcceEccCCcchhHHHH
Q 002950 432 LTY-IVKGQRLRFGC-KQGNGIVCDCC-NKEISPSQFEAHAGMAARRQPYRHIYTSNGMTLHDIAI 494 (863)
Q Consensus 432 v~Y-~~kGq~ll~G~-~qG~gI~C~cC-~~~~Sps~FE~hAG~~~~R~Py~~I~~~~G~sL~dl~~ 494 (863)
|++ .++|.++++.+ .+|...+|+.+ ++|+||++||.++|+.+.++|+.+|. .+|.+|..++.
T Consensus 13 VtCG~~~G~L~~~k~~~~g~~~kCI~~~g~~~TP~eFE~~~G~~~sK~WK~SIr-~~g~~L~~li~ 77 (82)
T PF01342_consen 13 VTCGDVKGTLYKKKFVKQGICGKCIQCEGRWFTPSEFERHGGKGSSKDWKRSIR-CGGEPLGKLIE 77 (82)
T ss_dssp EEETTEEEEEEHHHH-TTGTTSS-EEETTEEE-HHHHHHHHTTCTCS-HHHHSE-ETTEEHHHHHH
T ss_pred eEeCCeEEEEEHHHhhcccccCceEeeCCcEECHHHHHhhcCcccCCCCCccEE-ECCEEHHHHHh
Confidence 777 57899998888 77777778754 88999999999999999999999998 59999988765
No 78
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.47 E-value=0.00078 Score=68.60 Aligned_cols=108 Identities=16% Similarity=0.145 Sum_probs=78.3
Q ss_pred eecccEEEEEEeC-CeEEEEEEEEEecC-----eeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecc---h
Q 002950 745 EFGGMYSVILTVK-SVVVSAGLLRIFGR-----EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPA---A 815 (863)
Q Consensus 745 ~~~Gfy~~vl~~~-~~vV~aA~lri~g~-----~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A---~ 815 (863)
.=.||+.+|+..+ |++++=|.+-.+.. .++|. .|.+++++||+|+|++|++++.+.+..+|+..++-.- -
T Consensus 48 ~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~-SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n 126 (169)
T COG1247 48 TRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVEL-SIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDN 126 (169)
T ss_pred ccCCceEEEEEcCCCeEEEEEEeeeccCccccceEEEE-EEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCC
Confidence 3367899988765 99999888877663 45554 5788999999999999999999999999998876322 2
Q ss_pred hhHHHHHHhccCcEEcCHHHHHhhhccceeeeecCcceecccc
Q 002950 816 EKAESIWTKKFGFRKMSRERLLKYQRDFQLTIFKGTSMLEKKV 858 (863)
Q Consensus 816 ~~A~~~w~~kfGF~~i~~~~~~~~~~~~~l~~f~gt~~l~K~l 858 (863)
.....+.+ ++||+..+....-.+. .-.+=.+.+||+.|
T Consensus 127 ~aSi~lh~-~~GF~~~G~~~~vg~k----~g~wld~~~~~~~l 164 (169)
T COG1247 127 LASIALHE-KLGFEEVGTFPEVGDK----FGRWLDLVLMQLLL 164 (169)
T ss_pred cHhHHHHH-HCCCEEeccccccccc----cceEEeeeeeehhh
Confidence 33446666 9999999985432221 12344455566655
No 79
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=97.46 E-value=0.00059 Score=67.85 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=71.4
Q ss_pred eecccEEEEEEe-CCeEEEEEEEEE-----ecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEE---Eecch
Q 002950 745 EFGGMYSVILTV-KSVVVSAGLLRI-----FGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENL---VLPAA 815 (863)
Q Consensus 745 ~~~Gfy~~vl~~-~~~vV~aA~lri-----~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~L---vL~A~ 815 (863)
.|.=.+.+.++. +.++||-|.+.. .+.+.--|.=+-|+++|||+|+|+.|++.+-+.|..+|..++ ++.--
T Consensus 50 ~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN 129 (163)
T KOG3216|consen 50 PFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWN 129 (163)
T ss_pred CccEEEEEEEecCCCceeEEeeeecccccccccceEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccc
Confidence 334445555554 789999988866 345667888899999999999999999999999999999885 55555
Q ss_pred hhHHHHHHhccCcEEcCH
Q 002950 816 EKAESIWTKKFGFRKMSR 833 (863)
Q Consensus 816 ~~A~~~w~~kfGF~~i~~ 833 (863)
.-|+.+|+ +.|++....
T Consensus 130 ~rAi~lY~-k~gaq~l~~ 146 (163)
T KOG3216|consen 130 HRAILLYE-KVGAQDLKE 146 (163)
T ss_pred hhHHHHHH-HhCccccce
Confidence 79999999 999988765
No 80
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.31 E-value=8.5e-05 Score=87.09 Aligned_cols=105 Identities=24% Similarity=0.547 Sum_probs=62.8
Q ss_pred ccccccc---CCCceeecCCCCCcccccccCCC--CCCCCCCCCcccccCCCCCccCcccccCCCCCCCccccccccccC
Q 002950 509 DMCHVCG---DGENLLLCNGCPLAFHAACLDPL--LIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAPGAEVGGCVICRL 583 (863)
Q Consensus 509 d~C~vCg---dgG~Ll~Cd~C~~sfH~~Cl~p~--~vp~g~W~C~~C~~~~~~e~~dpIr~~r~~k~~~~e~~~C~vC~~ 583 (863)
..|..|+ |...+++|+.|+-+||-+|..|+ .++.|.|+|+.|....+++..-|--..++.. ....|.-|..
T Consensus 69 rvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg~s~~~~~----~~~~~~~c~s 144 (694)
T KOG4443|consen 69 RVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPGLSLDLQE----GYLQCAPCAS 144 (694)
T ss_pred eeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHhhhhccccccccchhhhc----cCcccccccc
Confidence 4566676 45689999999999999999996 8999999999886544443211110111110 1112444411
Q ss_pred CCCccchhhhcccCCCccccCC--CCceeeccCcccccCcccccc
Q 002950 584 SPSENFDIRLCRSHDFSAATFD--DRTVIYCDQCEKEFHVGCLRK 626 (863)
Q Consensus 584 ~~~e~~~l~l~r~~d~~~~~~~--~~~Ll~CdqC~rayHv~CL~p 626 (863)
. ..| +-+.+...+ .-.+++|++|.+|-|..|-.-
T Consensus 145 ~-------~~c--Pvc~~~Y~~~e~~~~~~c~~c~rwsh~~c~~~ 180 (694)
T KOG4443|consen 145 L-------SYC--PVCLIVYQDSESLPMVCCSICQRWSHGGCDGI 180 (694)
T ss_pred c-------ccC--chHHHhhhhccchhhHHHHHhcccccCCCCcc
Confidence 0 000 000011122 234599999999999999653
No 81
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=96.92 E-value=0.00034 Score=76.35 Aligned_cols=37 Identities=41% Similarity=0.983 Sum_probs=31.8
Q ss_pred CCCceeeccC--cc-cccCccccccCCCCCCcCCCCCCceecCCchh
Q 002950 605 DDRTVIYCDQ--CE-KEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 648 (863)
Q Consensus 605 ~~~~Ll~Cdq--C~-rayHv~CL~p~g~~~L~evP~g~WfCc~~C~~ 648 (863)
..+.|+-||. |+ .|||..|. .|..-|.|+||| +.|..
T Consensus 228 syg~Mi~CDn~~C~~eWFH~~CV------GL~~~PkgkWyC-~~C~~ 267 (274)
T KOG1973|consen 228 SYGKMIGCDNPGCPIEWFHFTCV------GLKTKPKGKWYC-PRCKA 267 (274)
T ss_pred ccccccccCCCCCCcceEEEecc------ccccCCCCcccc-hhhhh
Confidence 5678999997 99 99999999 477889999999 47753
No 82
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.89 E-value=0.00042 Score=82.26 Aligned_cols=46 Identities=37% Similarity=0.915 Sum_probs=39.7
Q ss_pred cccccccccCC---CceeecCCCCCc-ccccccCCC--CCCCCCCCCccccc
Q 002950 507 SDDMCHVCGDG---ENLLLCNGCPLA-FHAACLDPL--LIPESGWRCPNCRQ 552 (863)
Q Consensus 507 ~dd~C~vCgdg---G~Ll~Cd~C~~s-fH~~Cl~p~--~vp~g~W~C~~C~~ 552 (863)
...-|.+|+.. ..||+||.|..+ ||.+||+|+ ++|-+.|||+.|.-
T Consensus 214 E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 214 EEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred ccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 34569999843 579999999999 999999996 69999999999965
No 83
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.81 E-value=0.00049 Score=73.06 Aligned_cols=37 Identities=41% Similarity=1.122 Sum_probs=32.3
Q ss_pred CCCceeecc--Cccc-ccCccccccCCCCCCcCCCCCCceecCCchh
Q 002950 605 DDRTVIYCD--QCEK-EFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 648 (863)
Q Consensus 605 ~~~~Ll~Cd--qC~r-ayHv~CL~p~g~~~L~evP~g~WfCc~~C~~ 648 (863)
.-|.|+-|| .|++ |||..|+ .|++.|+|.|+| ++|..
T Consensus 230 SyGqMVaCDn~nCkrEWFH~~CV------GLk~pPKG~WYC-~eCk~ 269 (271)
T COG5034 230 SYGQMVACDNANCKREWFHLECV------GLKEPPKGKWYC-PECKK 269 (271)
T ss_pred ccccceecCCCCCchhheecccc------ccCCCCCCcEeC-HHhHh
Confidence 357899999 7997 9999999 588999999999 89965
No 84
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=96.76 E-value=0.0011 Score=65.85 Aligned_cols=61 Identities=15% Similarity=0.234 Sum_probs=52.7
Q ss_pred eeEEEeeeeeeccccccChhHHHHHH-HHHHHhhCCccEEEecchhhHHHHHHhccCcEEcCH
Q 002950 772 EVAELPLVATCREYQGKGCFQALFSC-IERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMSR 833 (863)
Q Consensus 772 ~~AEip~VAT~~~~RgqG~gr~L~~~-iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i~~ 833 (863)
..+.|-.+|+.++||.||++..|+.. |..+-..-=+++++|=+-.-.+|||+ +|||+.+++
T Consensus 100 ~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYE-r~gFk~vgp 161 (190)
T KOG4144|consen 100 HNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYE-RFGFKAVGP 161 (190)
T ss_pred cceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhH-hcCceeecc
Confidence 34788899999999999999999887 55555555677899999999999999 999999998
No 85
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=96.70 E-value=0.0099 Score=57.84 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=56.5
Q ss_pred cEEEEEEeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecch------hhHHHHH
Q 002950 749 MYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA------EKAESIW 822 (863)
Q Consensus 749 fy~~vl~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~------~~A~~~w 822 (863)
+|++ ..|+.++|++.+.+.|. -|+|--+.||+.=||+|.|+.|++.+.+.+.+ |....+.+. ..+..-+
T Consensus 40 l~aA--rFNdRlLgAv~v~~~~~-~~~L~~l~VRevTRrRGVG~yLlee~~rq~p~--i~~w~l~~~~~~~~~~~~~~~F 114 (128)
T PF12568_consen 40 LFAA--RFNDRLLGAVKVTISGQ-QAELSDLCVREVTRRRGVGLYLLEEVLRQLPD--IKHWWLADEGVEPQDRAVMAAF 114 (128)
T ss_dssp EEEE--EETTEEEEEEEEEEETT-EEEEEEEEE-TT-SSSSHHHHHHHHHHHHS-S----EEEE--TT-S--THHHHHHH
T ss_pred EEEE--EechheeeeEEEEEcCc-ceEEeeEEEeeccccccHHHHHHHHHHHHCCC--CcEEEEecCCCcccchHHHHHH
Confidence 4444 89999999999999766 69999999999999999999999999999954 455444433 2334444
Q ss_pred HhccCcEEcCH
Q 002950 823 TKKFGFRKMSR 833 (863)
Q Consensus 823 ~~kfGF~~i~~ 833 (863)
...+||...++
T Consensus 115 m~a~GF~~~~~ 125 (128)
T PF12568_consen 115 MQACGFSAQSD 125 (128)
T ss_dssp HHHHT-EE-SS
T ss_pred HHHcCccccCC
Confidence 44999987654
No 86
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=96.69 E-value=0.0097 Score=58.30 Aligned_cols=89 Identities=20% Similarity=0.291 Sum_probs=71.3
Q ss_pred cccEEEEEEeCC--eEEEEEEEEEec----CeeEEEeeeeeeccccccChhHHHHHHHHHHHhh-CCccEEEecch---h
Q 002950 747 GGMYSVILTVKS--VVVSAGLLRIFG----REVAELPLVATCREYQGKGCFQALFSCIERLLCS-LNVENLVLPAA---E 816 (863)
Q Consensus 747 ~Gfy~~vl~~~~--~vV~aA~lri~g----~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~-lgV~~LvL~A~---~ 816 (863)
.+.|.++...++ ++||...+.... .+.+++-..- .+.|+||||+...+.++.+.+-. +|+.+|++-.. .
T Consensus 64 ~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~ 142 (187)
T COG1670 64 GGAFAIELKATGDGELIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENE 142 (187)
T ss_pred CceEEEEEEeCCCCeEEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCH
Confidence 456666666544 999999998665 5678887766 99999999999999999998666 99999988776 4
Q ss_pred hHHHHHHhccCcEEcCHHHHH
Q 002950 817 KAESIWTKKFGFRKMSRERLL 837 (863)
Q Consensus 817 ~A~~~w~~kfGF~~i~~~~~~ 837 (863)
-+...++ |+||+..+.....
T Consensus 143 ~S~rv~e-k~Gf~~eg~~~~~ 162 (187)
T COG1670 143 ASIRVYE-KLGFRLEGELRQH 162 (187)
T ss_pred HHHHHHH-HcCChhhhhhhhc
Confidence 6678888 9999998875443
No 87
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=96.66 E-value=0.0097 Score=64.81 Aligned_cols=77 Identities=17% Similarity=0.040 Sum_probs=56.1
Q ss_pred EeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEcCH
Q 002950 755 TVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMSR 833 (863)
Q Consensus 755 ~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i~~ 833 (863)
..+++||+.|.-.....+.+||- |+|.++|||||+++++-.++...+.+-|+--.+=-+-.....+=+ ||||+...+
T Consensus 171 ~~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~N~~S~~lA~-kLGf~~~~~ 247 (265)
T PF12746_consen 171 LHDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFILECLENGLYPSWDCHNLASIALAE-KLGFHFDFE 247 (265)
T ss_dssp EETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EESSHHHHHHHH-HCT--EEEE
T ss_pred EECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCCCHHHHHHHH-HcCCcccce
Confidence 56899999877777777778886 799999999999999999999999999988776443333334444 999987543
No 88
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.66 E-value=0.0063 Score=66.26 Aligned_cols=78 Identities=18% Similarity=0.312 Sum_probs=69.5
Q ss_pred EEEEEE-eCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCc
Q 002950 750 YSVILT-VKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGF 828 (863)
Q Consensus 750 y~~vl~-~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF 828 (863)
|+++.+ .|+++|+|+.+ .|. -|+-|||++.+||-|+.-.|+..+-.++-++|..+|++-+-++...++. .+||
T Consensus 37 ~~v~~~~~~~~iiacGsi--aGn---vikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk-~~GF 110 (352)
T COG3053 37 YFVAIYRDNEEIIACGSI--AGN---VIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFK-QCGF 110 (352)
T ss_pred EEEEEEcCCCcEEEeccc--ccc---eeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHH-hCCc
Confidence 444555 55999999996 454 3789999999999999999999999999999999999999999999999 9999
Q ss_pred EEcCH
Q 002950 829 RKMSR 833 (863)
Q Consensus 829 ~~i~~ 833 (863)
..+..
T Consensus 111 ~~i~~ 115 (352)
T COG3053 111 SEIAS 115 (352)
T ss_pred eEeec
Confidence 99876
No 89
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=96.63 E-value=0.00079 Score=73.52 Aligned_cols=43 Identities=28% Similarity=0.787 Sum_probs=38.1
Q ss_pred cccccccCCCceeecCC--CC-CcccccccCCCCCCCCCCCCccccc
Q 002950 509 DMCHVCGDGENLLLCNG--CP-LAFHAACLDPLLIPESGWRCPNCRQ 552 (863)
Q Consensus 509 d~C~vCgdgG~Ll~Cd~--C~-~sfH~~Cl~p~~vp~g~W~C~~C~~ 552 (863)
.+|. |...|+|+-||. |+ .=||..|+|+...|.|.|||+.|..
T Consensus 222 C~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 222 CICN-QVSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKA 267 (274)
T ss_pred EEec-ccccccccccCCCCCCcceEEEeccccccCCCCcccchhhhh
Confidence 3455 568899999999 99 8899999999999999999999974
No 90
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=96.63 E-value=0.0069 Score=56.65 Aligned_cols=70 Identities=17% Similarity=0.172 Sum_probs=60.6
Q ss_pred cccEEEEEEeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHH
Q 002950 747 GGMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAES 820 (863)
Q Consensus 747 ~Gfy~~vl~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~ 820 (863)
+++|++ ..+|+.++.++..-.|.+..-|.--.|..++||||++++|+......+++-|.+ ++|..+-|..
T Consensus 15 ~~~y~~--~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~k--iiP~Csf~~a 84 (99)
T COG2388 15 NGRYVL--TDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLK--IIPLCSFAVA 84 (99)
T ss_pred ceEEEE--ecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCe--EcccchHHHH
Confidence 577876 888999999999999999999999999999999999999999999999999996 4455553333
No 91
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=96.61 E-value=0.0086 Score=53.39 Aligned_cols=66 Identities=12% Similarity=0.071 Sum_probs=53.6
Q ss_pred EEEeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHH
Q 002950 753 ILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESI 821 (863)
Q Consensus 753 vl~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~ 821 (863)
.+..+|+.+|...++. +.++..|--.-|.+++||||+|+.||+++-+.+++.|.+-+ |..+=|..+
T Consensus 3 ~~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~--p~C~y~~~~ 68 (78)
T PF14542_consen 3 ELKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKVV--PTCSYVAKY 68 (78)
T ss_dssp EEESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEE--ETSHHHHHH
T ss_pred EEEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEEE--EECHHHHHH
Confidence 4567789999999987 77888999999999999999999999999999999998855 444434433
No 92
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=96.53 E-value=0.0029 Score=53.48 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=40.4
Q ss_pred eeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCc
Q 002950 779 VATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGF 828 (863)
Q Consensus 779 VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF 828 (863)
++|+++|||+|+|+.|+..+++.++..|+. ....+..+|. ++||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~-~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYE-KNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHH-hcCC
Confidence 999999999999999999999999998887 5567788888 8988
No 93
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=96.47 E-value=0.0073 Score=62.18 Aligned_cols=84 Identities=24% Similarity=0.313 Sum_probs=64.0
Q ss_pred cEEEEEEeCCeEEEEEEEEE---ecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEe---cchhhHHHHH
Q 002950 749 MYSVILTVKSVVVSAGLLRI---FGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL---PAAEKAESIW 822 (863)
Q Consensus 749 fy~~vl~~~~~vV~aA~lri---~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL---~A~~~A~~~w 822 (863)
-|.+.....+++||-+.+|. +|..++=.=-|=+.++|||+|+|+.||+.+|.++...+.+.++| ..-.-|.+||
T Consensus 93 ~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy 172 (202)
T KOG2488|consen 93 RYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFY 172 (202)
T ss_pred eEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHH
Confidence 35444344458999999988 34445544455566799999999999999999999988886654 3446889999
Q ss_pred HhccCcEEcCH
Q 002950 823 TKKFGFRKMSR 833 (863)
Q Consensus 823 ~~kfGF~~i~~ 833 (863)
. ++||.+...
T Consensus 173 ~-~~gf~~~~~ 182 (202)
T KOG2488|consen 173 H-RLGFVVDEE 182 (202)
T ss_pred H-HcCcccCCC
Confidence 9 999988765
No 94
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=96.38 E-value=0.0064 Score=55.74 Aligned_cols=74 Identities=23% Similarity=0.255 Sum_probs=58.2
Q ss_pred EEeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccE-E-EecchhhHHHHHHhccCcEEc
Q 002950 754 LTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVEN-L-VLPAAEKAESIWTKKFGFRKM 831 (863)
Q Consensus 754 l~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~-L-vL~A~~~A~~~w~~kfGF~~i 831 (863)
|--+|.+||=.. -+..+||+.-.|.|+|||||+.+.++....+.|..+|+.- . +..+-...+.+-. ++||..+
T Consensus 4 lgpeG~PVSW~l----mdqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~-~lg~~~~ 78 (89)
T PF08444_consen 4 LGPEGNPVSWSL----MDQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSK-SLGFIFM 78 (89)
T ss_pred cCCCCCEeEEEE----ecccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHH-HCCCeec
Confidence 345688887654 4668999999999999999999999999999999999984 2 2233345556666 8898877
Q ss_pred C
Q 002950 832 S 832 (863)
Q Consensus 832 ~ 832 (863)
+
T Consensus 79 p 79 (89)
T PF08444_consen 79 P 79 (89)
T ss_pred C
Confidence 5
No 95
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.37 E-value=0.00076 Score=51.70 Aligned_cols=34 Identities=32% Similarity=0.977 Sum_probs=20.7
Q ss_pred CceeecCCCCCcccccccCCCCCCCC-CCCCcccc
Q 002950 518 ENLLLCNGCPLAFHAACLDPLLIPES-GWRCPNCR 551 (863)
Q Consensus 518 G~Ll~Cd~C~~sfH~~Cl~p~~vp~g-~W~C~~C~ 551 (863)
.+|+.|+.|.-++|+.|+|...++.+ .|+|..|+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 46899999999999999999888876 89999883
No 96
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.29 E-value=0.0043 Score=75.51 Aligned_cols=58 Identities=17% Similarity=0.162 Sum_probs=49.2
Q ss_pred EEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEE--EecchhhHHHHHHhccCcEEcCH
Q 002950 774 AELPLVATCREYQGKGCFQALFSCIERLLCSLNVENL--VLPAAEKAESIWTKKFGFRKMSR 833 (863)
Q Consensus 774 AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~L--vL~A~~~A~~~w~~kfGF~~i~~ 833 (863)
|.|-||||+|++|++|||++|++.|.++++ .|+..| --.+.++..+||. |.||.++-=
T Consensus 532 ~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~-rnGF~pVhl 591 (758)
T COG1444 532 WRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWL-RNGFVPVHL 591 (758)
T ss_pred eeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHH-HcCeEEEEe
Confidence 678899999999999999999999999996 444443 3456789999999 999998854
No 97
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=96.17 E-value=0.0048 Score=63.84 Aligned_cols=61 Identities=20% Similarity=0.281 Sum_probs=54.7
Q ss_pred eEEEeeeeeeccccccChhHHHHHHHHHHHhhCC-ccEEEecch---hhHHHHHHhccCcEEcCHH
Q 002950 773 VAELPLVATCREYQGKGCFQALFSCIERLLCSLN-VENLVLPAA---EKAESIWTKKFGFRKMSRE 834 (863)
Q Consensus 773 ~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lg-V~~LvL~A~---~~A~~~w~~kfGF~~i~~~ 834 (863)
+.-|-.++|.+.||.+|+|..|++.+.+.+...+ ++++.|.++ ..|..||+ ++||+.+...
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~-~~gF~~~~~~ 153 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYE-KRGFEIVERL 153 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHH-hcCceEeecc
Confidence 5678999999999999999999999999999999 777777776 68899999 9999998774
No 98
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=96.09 E-value=0.0027 Score=63.09 Aligned_cols=27 Identities=44% Similarity=1.029 Sum_probs=24.0
Q ss_pred ccCccccccCCCCCCcCCCCCCceecCCchhh
Q 002950 618 EFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRI 649 (863)
Q Consensus 618 ayHv~CL~p~g~~~L~evP~g~WfCc~~C~~i 649 (863)
+||+.||+| +|.++|+|+|+| +.|..-
T Consensus 1 g~H~~CL~P----pl~~~P~g~W~C-p~C~~~ 27 (148)
T cd04718 1 GFHLCCLRP----PLKEVPEGDWIC-PFCEVE 27 (148)
T ss_pred CcccccCCC----CCCCCCCCCcCC-CCCcCC
Confidence 599999998 999999999999 788643
No 99
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=95.98 E-value=0.0047 Score=70.67 Aligned_cols=51 Identities=33% Similarity=0.769 Sum_probs=39.7
Q ss_pred Ccccccccccc-----CCCceeecCCCCCcccccccCCC---CCCC-------CCCCCcccccCCC
Q 002950 505 GGSDDMCHVCG-----DGENLLLCNGCPLAFHAACLDPL---LIPE-------SGWRCPNCRQGHS 555 (863)
Q Consensus 505 ~~~dd~C~vCg-----dgG~Ll~Cd~C~~sfH~~Cl~p~---~vp~-------g~W~C~~C~~~~~ 555 (863)
...-.+|.||- +.|+++-||.|+-..|..|+|.. .+|. ..|||.-|..++.
T Consensus 116 pkk~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs 181 (707)
T KOG0957|consen 116 PKKAVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVS 181 (707)
T ss_pred cccceEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCC
Confidence 34445899994 56899999999999999999963 3332 5899999987543
No 100
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=95.97 E-value=0.0094 Score=66.47 Aligned_cols=85 Identities=22% Similarity=0.279 Sum_probs=68.2
Q ss_pred CCceecccEEEEEEeCCeEEEEEEEEEe------cC---eeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEe
Q 002950 742 SGQEFGGMYSVILTVKSVVVSAGLLRIF------GR---EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 812 (863)
Q Consensus 742 ~~~~~~Gfy~~vl~~~~~vV~aA~lri~------g~---~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL 812 (863)
+.+++.++|++ +.|.++++ +|++. |. ..|-|-.||+.|+|||+|+-|+|+....+..++.|+.-.+|
T Consensus 34 kil~~~n~~vi--~~nqkl~s--~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L 109 (389)
T COG4552 34 KILAEPNSYVI--YMNQKLAS--RLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSAL 109 (389)
T ss_pred hhccCCcceEE--eehhhhhh--cccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEe
Confidence 34566777765 77778755 34443 43 35677889999999999999999999999999999999888
Q ss_pred cchhhHHHHHHhccCcEEcCH
Q 002950 813 PAAEKAESIWTKKFGFRKMSR 833 (863)
Q Consensus 813 ~A~~~A~~~w~~kfGF~~i~~ 833 (863)
.+. ..+||. ||||...+.
T Consensus 110 ~P~--s~~iYr-KfGye~asn 127 (389)
T COG4552 110 HPF--SGGIYR-KFGYEYASN 127 (389)
T ss_pred ccC--chhhHh-hccccccce
Confidence 665 468999 999998776
No 101
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=95.78 E-value=0.0044 Score=70.92 Aligned_cols=37 Identities=38% Similarity=1.076 Sum_probs=32.4
Q ss_pred CCCceeeccCcccccCccccccCCCCCCcCCCCC----CceecCCc
Q 002950 605 DDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKD----KWFCCDDC 646 (863)
Q Consensus 605 ~~~~Ll~CdqC~rayHv~CL~p~g~~~L~evP~g----~WfCc~~C 646 (863)
+.-.+++||.|...||.+||.| ||..+|+. -|.| ..|
T Consensus 555 dQHll~~CDtC~lhYHlGCL~P----PLTR~Pkk~kn~gWqC-sEC 595 (707)
T KOG0957|consen 555 DQHLLTQCDTCHLHYHLGCLSP----PLTRLPKKNKNFGWQC-SEC 595 (707)
T ss_pred hhHHHhhcchhhceeeccccCC----ccccCcccccCcceee-ccc
Confidence 4456889999999999999997 89999965 4999 899
No 102
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=95.74 E-value=0.0044 Score=66.05 Aligned_cols=44 Identities=27% Similarity=0.858 Sum_probs=36.9
Q ss_pred ccccccccc--CCCceeecCC--CCCc-ccccccCCCCCCCCCCCCcccc
Q 002950 507 SDDMCHVCG--DGENLLLCNG--CPLA-FHAACLDPLLIPESGWRCPNCR 551 (863)
Q Consensus 507 ~dd~C~vCg--dgG~Ll~Cd~--C~~s-fH~~Cl~p~~vp~g~W~C~~C~ 551 (863)
+.-+|+ |. .-|+|+-||+ |.+- ||..|+|+...|+|.|||+.|+
T Consensus 220 e~lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk 268 (271)
T COG5034 220 EELYCF-CQQVSYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECK 268 (271)
T ss_pred ceeEEE-ecccccccceecCCCCCchhheeccccccCCCCCCcEeCHHhH
Confidence 344554 65 4589999998 8875 6999999999999999999996
No 103
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=95.62 E-value=0.033 Score=55.99 Aligned_cols=82 Identities=16% Similarity=0.198 Sum_probs=64.6
Q ss_pred EEEE-eCCeEEEEEEEEEec-----CeeEEEeeeeeeccccccChhHHHHHHHHH-HHhhCCccEEEecch---hhHHHH
Q 002950 752 VILT-VKSVVVSAGLLRIFG-----REVAELPLVATCREYQGKGCFQALFSCIER-LLCSLNVENLVLPAA---EKAESI 821 (863)
Q Consensus 752 ~vl~-~~~~vV~aA~lri~g-----~~~AEip~VAT~~~~RgqG~gr~L~~~iE~-~l~~lgV~~LvL~A~---~~A~~~ 821 (863)
+|.+ .+|+|||-.....+. +.-.+|-.+||...||+.|++++||..-.+ ++...+.+.+-|... ..|...
T Consensus 44 yVA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~L 123 (193)
T KOG3235|consen 44 YVAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHL 123 (193)
T ss_pred EEEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHh
Confidence 3445 578999988776665 225689999999999999999999976444 455567777777765 589999
Q ss_pred HHhccCcEEcCH
Q 002950 822 WTKKFGFRKMSR 833 (863)
Q Consensus 822 w~~kfGF~~i~~ 833 (863)
|++.+||.+.+-
T Consensus 124 Y~~tl~F~v~ev 135 (193)
T KOG3235|consen 124 YKNTLGFVVCEV 135 (193)
T ss_pred hhhccceEEeec
Confidence 999999998875
No 104
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=95.45 E-value=0.12 Score=55.59 Aligned_cols=123 Identities=15% Similarity=0.193 Sum_probs=87.0
Q ss_pred chhhHHHHHHHhhccccccccCCCccccccccccCCCceecccEEEEEEe-CCeEEEEEEEEEe----------------
Q 002950 707 SLLSSATAIFRECFDPIIAECGRDLIPVMVYGRNISGQEFGGMYSVILTV-KSVVVSAGLLRIF---------------- 769 (863)
Q Consensus 707 ~lLs~Al~I~~EcF~Pi~~~Sg~DlIp~Mvyg~~~~~~~~~Gfy~~vl~~-~~~vV~aA~lri~---------------- 769 (863)
..+..|..+=++.| +..-|-++..+---+.++...|-.--|.++... +|++||+++|...
T Consensus 17 ~~~~~~~~lR~~VF---v~e~gw~~~~~~~~~~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~ 93 (241)
T TIGR03694 17 ELLEEAFRLRYQVY---CEELGFEPPSDYPDGLETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCS 93 (241)
T ss_pred HHHHHHHHHHHHHH---HHhcCCCCCCCCCCCCcCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccHHHHhc
Confidence 45667777777777 222333322211124455656655566655543 5899999999752
Q ss_pred --------------cCeeEEEeeeeeecccccc--------C--------------------hhHHHHHHHHHHHhhCCc
Q 002950 770 --------------GREVAELPLVATCREYQGK--------G--------------------CFQALFSCIERLLCSLNV 807 (863)
Q Consensus 770 --------------g~~~AEip~VAT~~~~Rgq--------G--------------------~gr~L~~~iE~~l~~lgV 807 (863)
...++|+-++||.++||++ | +...|+.++-+.+...|+
T Consensus 94 ~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi 173 (241)
T TIGR03694 94 HSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANGI 173 (241)
T ss_pred cccchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCCC
Confidence 1369999999999999974 2 457799999999999999
Q ss_pred cEEEecchhhHHHHHHhccCc--EEcCH
Q 002950 808 ENLVLPAAEKAESIWTKKFGF--RKMSR 833 (863)
Q Consensus 808 ~~LvL~A~~~A~~~w~~kfGF--~~i~~ 833 (863)
++++.-+.+....++. ++|+ +.+++
T Consensus 174 ~~~~~v~~~~l~r~l~-r~G~~~~~lG~ 200 (241)
T TIGR03694 174 THWYAIMEPRLARLLS-RFGIQFRQVGP 200 (241)
T ss_pred cEEEEEeCHHHHHHHH-HhCCceEEcCC
Confidence 9999998888888887 9996 45554
No 105
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=95.17 E-value=0.05 Score=54.70 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=48.2
Q ss_pred eEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccE---EEecchhhHHHHHHhccCcEEc
Q 002950 773 VAELPLVATCREYQGKGCFQALFSCIERLLCSLNVEN---LVLPAAEKAESIWTKKFGFRKM 831 (863)
Q Consensus 773 ~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~---LvL~A~~~A~~~w~~kfGF~~i 831 (863)
-+++--|+|.|+||++|+++.||+.||+.....+.-. ++.-.-.-|+.+|+ +|||.+.
T Consensus 69 h~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYk-kLGY~~Y 129 (173)
T KOG3234|consen 69 HGHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYK-KLGYSVY 129 (173)
T ss_pred eeEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHH-hcCceEE
Confidence 4678889999999999999999999999988775443 44444578999999 9999864
No 106
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.16 E-value=0.011 Score=58.99 Aligned_cols=24 Identities=46% Similarity=1.158 Sum_probs=21.9
Q ss_pred cccccccCCC--CCCCCCCCCccccc
Q 002950 529 AFHAACLDPL--LIPESGWRCPNCRQ 552 (863)
Q Consensus 529 sfH~~Cl~p~--~vp~g~W~C~~C~~ 552 (863)
+||..||.|+ .+|+|+|+|+.|..
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~ 26 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEV 26 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcC
Confidence 5999999987 89999999999975
No 107
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=95.09 E-value=0.005 Score=79.80 Aligned_cols=43 Identities=35% Similarity=0.940 Sum_probs=38.4
Q ss_pred CCCCceeeccCcccccCccccccCCCCCCcCCCCCCceecCCchhhHH
Q 002950 604 FDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIHA 651 (863)
Q Consensus 604 ~~~~~Ll~CdqC~rayHv~CL~p~g~~~L~evP~g~WfCc~~C~~i~~ 651 (863)
.+...|+.|+.|..+||..|+++ .+..+|.++|+| +.|..-+.
T Consensus 1118 ~~~~~m~lc~~c~~~~h~~C~rp----~~~~~~~~dW~C-~~c~~e~~ 1160 (1404)
T KOG1245|consen 1118 KQDEKMLLCDECLSGFHLFCLRP----ALSSVPPGDWMC-PSCRKEHR 1160 (1404)
T ss_pred ccchhhhhhHhhhhhHHHHhhhh----hhccCCcCCccC-Cccchhhh
Confidence 45678999999999999999998 799999999999 79987665
No 108
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=94.54 E-value=0.027 Score=64.79 Aligned_cols=51 Identities=16% Similarity=0.250 Sum_probs=47.2
Q ss_pred eccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEcCH
Q 002950 782 CREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMSR 833 (863)
Q Consensus 782 ~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i~~ 833 (863)
...+|.||||+.||+..|++|++-|.++|.+-+..-+...|. ||||...++
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~-k~GY~~~gp 509 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYR-KLGYELDGP 509 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHH-HhCccccCC
Confidence 578999999999999999999999999999888889999999 999998765
No 109
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=94.53 E-value=0.025 Score=71.20 Aligned_cols=53 Identities=26% Similarity=0.770 Sum_probs=40.5
Q ss_pred cccccccccCCCCccchhhhcccCCCccccCCCCceeeccCcccccCccccccCCCCCCcCCCCCCceecCCchhhH
Q 002950 574 EVGGCVICRLSPSENFDIRLCRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIH 650 (863)
Q Consensus 574 e~~~C~vC~~~~~e~~~l~l~r~~d~~~~~~~~~~Ll~CdqC~rayHv~CL~p~g~~~L~evP~g~WfCc~~C~~i~ 650 (863)
+...|.+| .+++ +..-+.++.||.|..++|..|.. .+-+|+|.|+| ..|..-.
T Consensus 218 ~D~~C~iC-------------~~~~----~~n~n~ivfCD~Cnl~VHq~Cyg------i~~ipeg~WlC-r~Cl~s~ 270 (1051)
T KOG0955|consen 218 EDAVCCIC-------------LDGE----CQNSNVIVFCDGCNLAVHQECYG------IPFIPEGQWLC-RRCLQSP 270 (1051)
T ss_pred CCccceee-------------cccc----cCCCceEEEcCCCcchhhhhccC------CCCCCCCcEee-hhhccCc
Confidence 34579999 4443 23457899999999999999995 34589999999 8886443
No 110
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=94.05 E-value=0.018 Score=66.54 Aligned_cols=43 Identities=37% Similarity=0.853 Sum_probs=36.3
Q ss_pred ccccccCC-----CceeecCCCCCcccccccCCC------CCCCCCCCCccccc
Q 002950 510 MCHVCGDG-----ENLLLCNGCPLAFHAACLDPL------LIPESGWRCPNCRQ 552 (863)
Q Consensus 510 ~C~vCgdg-----G~Ll~Cd~C~~sfH~~Cl~p~------~vp~g~W~C~~C~~ 552 (863)
.|.+|..| ..||.|++|..-||+.|+.|. ..+...|+|..|..
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~ 223 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNR 223 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhcc
Confidence 39999744 389999999999999999984 34678999999976
No 111
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=93.76 E-value=0.5 Score=44.50 Aligned_cols=66 Identities=11% Similarity=-0.136 Sum_probs=57.5
Q ss_pred cEEEEEEeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecch
Q 002950 749 MYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA 815 (863)
Q Consensus 749 fy~~vl~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~ 815 (863)
...++++.+|++||++..-. ..+.+..-..+++++|++.+.|..|+..+-+.+.+.|++.+-+...
T Consensus 71 ~~l~~~~~~g~~va~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~g 136 (142)
T PF13480_consen 71 LRLFVLYDGGEPVAFALGFR-HGGTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGGG 136 (142)
T ss_pred EEEEEEEECCEEEEEEEEEE-ECCEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 55666788999999997655 5557889999999999999999999999999999999999887765
No 112
>smart00258 SAND SAND domain.
Probab=93.63 E-value=0.072 Score=47.22 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=41.5
Q ss_pred CCeEeecCCCCCCceeeehhHHHHhcc-ccCCCCCCcccccCCCcHHHHHHH
Q 002950 246 GGGYLCGCPLCNFSKVVSAHEFEQHAG-AKTRHPNNHIYLENGKPIYSIIQE 296 (863)
Q Consensus 246 ~~gi~C~C~~C~~~~v~s~~~FE~HAG-s~~~~p~~~I~lenG~sL~~v~~~ 296 (863)
..|+.+-|..++. +-+||.+||.||| .++|.=-..|.. ||.+|+.+|+.
T Consensus 20 ~~G~~~kCI~~~~-~~~TP~eFe~~~g~~~~K~WK~sIR~-~g~~Lr~L~~~ 69 (73)
T smart00258 20 KCGISVKCIQYED-KWFTPKEFEIEGGKGKSKDWKRSIRC-GGSSLRTLMEN 69 (73)
T ss_pred hcCcccCCccCCC-EEEChHHHHhhcCCcccCCcchheeE-CCccHHHHHHc
Confidence 4599999999988 8999999999999 467777777754 68999998865
No 113
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=93.56 E-value=0.033 Score=66.16 Aligned_cols=38 Identities=29% Similarity=1.050 Sum_probs=32.9
Q ss_pred CCCCceeecc--CcccccCccccccCCCCCCcCCCCCCceecCCchh
Q 002950 604 FDDRTVIYCD--QCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 648 (863)
Q Consensus 604 ~~~~~Ll~Cd--qC~rayHv~CL~p~g~~~L~evP~g~WfCc~~C~~ 648 (863)
..++.|+.|| .|.-+.|..|.. +-.+|.|.||| ..|..
T Consensus 17 WaeNPLVYCDG~nCsVAVHQaCYG------IvqVPtGpWfC-rKCes 56 (900)
T KOG0956|consen 17 WAENPLVYCDGHNCSVAVHQACYG------IVQVPTGPWFC-RKCES 56 (900)
T ss_pred CccCceeeecCCCceeeeehhcce------eEecCCCchhh-hhhhh
Confidence 4688999999 799999999984 56799999999 88864
No 114
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=93.50 E-value=0.45 Score=49.23 Aligned_cols=92 Identities=18% Similarity=0.149 Sum_probs=68.9
Q ss_pred cccCCCcee-cccEEEEEEeCCeEEEEEEEEEe---------------------cCeeEEEeeeeeecccccc------C
Q 002950 738 GRNISGQEF-GGMYSVILTVKSVVVSAGLLRIF---------------------GREVAELPLVATCREYQGK------G 789 (863)
Q Consensus 738 g~~~~~~~~-~Gfy~~vl~~~~~vV~aA~lri~---------------------g~~~AEip~VAT~~~~Rgq------G 789 (863)
|.++..+|- .-.|.+++. +|+++|+++|... +.+++|+=++++.++.++. -
T Consensus 34 g~E~DqyD~~~~~ylv~~~-~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~ 112 (182)
T PF00765_consen 34 GMEIDQYDDPDAVYLVALD-DGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSP 112 (182)
T ss_dssp SEE--TTGCTT-EEEEEEE-TTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-T
T ss_pred CcEeeecCCCCCeEEEEEE-CCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccH
Confidence 555555543 346777654 5999999999872 2579999999999885432 3
Q ss_pred hhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEc
Q 002950 790 CFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKM 831 (863)
Q Consensus 790 ~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i 831 (863)
+...|+.++-+.+.+.|++.++.-+....+.++. ++||...
T Consensus 113 ~~~~L~~~~~e~a~~~gi~~~v~V~~~~~~r~l~-r~G~~~~ 153 (182)
T PF00765_consen 113 VTMELLLGMVEFALSNGIRHIVGVVDPAMERILR-RAGWPVR 153 (182)
T ss_dssp HHHHHHHHHHHHHHCTT-SEEEEEEEHHHHHHHH-HCT-EEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEChHHHHHHH-HcCCceE
Confidence 6789999999999999999999888888889998 9999764
No 115
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=92.73 E-value=0.56 Score=48.61 Aligned_cols=82 Identities=26% Similarity=0.309 Sum_probs=59.4
Q ss_pred EEEEEEeCCeEEEEEEEEEec-------CeeEEEeeeeeeccccccChhHHHHHHHH-HHHhhCCccEEEecchhhHHHH
Q 002950 750 YSVILTVKSVVVSAGLLRIFG-------REVAELPLVATCREYQGKGCFQALFSCIE-RLLCSLNVENLVLPAAEKAESI 821 (863)
Q Consensus 750 y~~vl~~~~~vV~aA~lri~g-------~~~AEip~VAT~~~~RgqG~gr~L~~~iE-~~l~~lgV~~LvL~A~~~A~~~ 821 (863)
|.+++....++|+++.+-.+. ..+--+.+.-+.|+|||+|+++ |+..+. +.+..- =...++-+...+..+
T Consensus 48 ~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~k-l~~~~~~~~~~~~-~~N~~~~~~~~~~~~ 125 (181)
T PF06852_consen 48 VLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMK-LQDDICMDELDSV-DDNSVAQGNVKMSNF 125 (181)
T ss_pred EEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHH-HHHHHHHHHhccC-CCceeeecCHHHHHH
Confidence 444444456788877663322 3488888999999999999996 555554 455553 345666788899999
Q ss_pred HHhccCcEEcCH
Q 002950 822 WTKKFGFRKMSR 833 (863)
Q Consensus 822 w~~kfGF~~i~~ 833 (863)
|..-|||..++.
T Consensus 126 w~k~~G~~~~~h 137 (181)
T PF06852_consen 126 WHKMFGFDDYGH 137 (181)
T ss_pred HHHHhCCCCCcc
Confidence 999999988887
No 116
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=92.25 E-value=0.035 Score=72.36 Aligned_cols=47 Identities=40% Similarity=1.094 Sum_probs=40.7
Q ss_pred ccccccccccCC---CceeecCCCCCcccccccCCC--CCCCCCCCCccccc
Q 002950 506 GSDDMCHVCGDG---ENLLLCNGCPLAFHAACLDPL--LIPESGWRCPNCRQ 552 (863)
Q Consensus 506 ~~dd~C~vCgdg---G~Ll~Cd~C~~sfH~~Cl~p~--~vp~g~W~C~~C~~ 552 (863)
.....|.+|... ..++.|+.|...||..|+.|. .+|.++|+|+.|+.
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~ 1157 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRK 1157 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccch
Confidence 445779999743 479999999999999999984 88999999999986
No 117
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=91.99 E-value=0.81 Score=48.25 Aligned_cols=120 Identities=15% Similarity=0.165 Sum_probs=82.0
Q ss_pred hhhHHHHHHHhhccccccccCCCccccccccccCCCceec-ccEEEEEEeCCeEEEEEEEEEe-----------------
Q 002950 708 LLSSATAIFRECFDPIIAECGRDLIPVMVYGRNISGQEFG-GMYSVILTVKSVVVSAGLLRIF----------------- 769 (863)
Q Consensus 708 lLs~Al~I~~EcF~Pi~~~Sg~DlIp~Mvyg~~~~~~~~~-Gfy~~vl~~~~~vV~aA~lri~----------------- 769 (863)
++.++..+=++.|- .+-|=++. ..-|.++..+|-. -.|.+....+|++||+++|-..
T Consensus 17 ~l~~~~rLR~~VF~---~elgW~~~--~~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~ 91 (207)
T PRK13834 17 LLKQMHRLRARVFG---GRLGWDVS--ITDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAG 91 (207)
T ss_pred HHHHHHHHHHHHhc---cccCCCCC--CCCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCC
Confidence 45556665567772 22222321 1124455555533 3566666678899999998431
Q ss_pred ----cCeeEEEeeeeeecccc---ccC----hhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcE--EcCH
Q 002950 770 ----GREVAELPLVATCREYQ---GKG----CFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFR--KMSR 833 (863)
Q Consensus 770 ----g~~~AEip~VAT~~~~R---gqG----~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~--~i~~ 833 (863)
.++++|+-++|++++++ +.+ +...|+.++-+.+...|+++++.-..+-...++. ++||. ++++
T Consensus 92 ~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~-r~G~~~~~lG~ 167 (207)
T PRK13834 92 RLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDLRFERILA-RAGWPMQRLGE 167 (207)
T ss_pred CCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH-HcCCCeEECCC
Confidence 25799999999998853 222 5678999999999999999999877777778886 99964 4444
No 118
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=91.35 E-value=0.097 Score=62.92 Aligned_cols=38 Identities=26% Similarity=0.887 Sum_probs=32.7
Q ss_pred CCCCceeeccCcccccCccccccCCCCCCcCCCCCCceecCCchh
Q 002950 604 FDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 648 (863)
Q Consensus 604 ~~~~~Ll~CdqC~rayHv~CL~p~g~~~L~evP~g~WfCc~~C~~ 648 (863)
.+.+.|++||.|.--.|..|.. +.++|.+.|.| ..|.-
T Consensus 283 e~~neMVfCd~Cn~cVHqaCyG------Ile~p~gpWlC-r~Cal 320 (893)
T KOG0954|consen 283 EEANEMVFCDKCNICVHQACYG------ILEVPEGPWLC-RTCAL 320 (893)
T ss_pred cccceeEEeccchhHHHHhhhc------eeecCCCCeee-hhccc
Confidence 4678999999999999999984 67899999999 77753
No 119
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=91.08 E-value=0.052 Score=41.72 Aligned_cols=33 Identities=33% Similarity=1.151 Sum_probs=17.6
Q ss_pred CceeeccCcccccCccccccCCCCCCcCCCCC-CceecCCc
Q 002950 607 RTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKD-KWFCCDDC 646 (863)
Q Consensus 607 ~~Ll~CdqC~rayHv~CL~p~g~~~L~evP~g-~WfCc~~C 646 (863)
+.|+.|+.|.-..|..|.. +...|.+ .|+| .-|
T Consensus 2 n~ll~C~~C~v~VH~~CYG------v~~~~~~~~W~C-~~C 35 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG------VSEVPDGDDWLC-DRC 35 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-------SS--SS------HHH
T ss_pred CceEEeCCCCCcCChhhCC------cccCCCCCcEEC-CcC
Confidence 4689999999999999985 3344544 7999 555
No 120
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=90.72 E-value=0.1 Score=60.11 Aligned_cols=35 Identities=29% Similarity=0.988 Sum_probs=29.1
Q ss_pred CCCceeeccCcccccCccccccCCCCCCcCCCCCCceecCCc
Q 002950 605 DDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDC 646 (863)
Q Consensus 605 ~~~~Ll~CdqC~rayHv~CL~p~g~~~L~evP~g~WfCc~~C 646 (863)
.-++++.||.|+-+.|..|.. +.-+|+|.|+| ..|
T Consensus 206 N~naiVfCdgC~i~VHq~CYG------I~f~peG~WlC-rkC 240 (669)
T COG5141 206 NSNAIVFCDGCEICVHQSCYG------IQFLPEGFWLC-RKC 240 (669)
T ss_pred CcceEEEecCcchhhhhhccc------ceecCcchhhh-hhh
Confidence 357899999999999999984 34578999999 555
No 121
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=90.55 E-value=0.47 Score=48.58 Aligned_cols=66 Identities=11% Similarity=0.066 Sum_probs=52.5
Q ss_pred cEEEEEEeCCeEEEEEEEEEecCe-----eEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchh
Q 002950 749 MYSVILTVKSVVVSAGLLRIFGRE-----VAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAE 816 (863)
Q Consensus 749 fy~~vl~~~~~vV~aA~lri~g~~-----~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~ 816 (863)
.|-+|-. ++++||...+|-.=.+ ..+| --+|+|+.||+||++.++.-....++.||++.+.+-+..
T Consensus 70 ~y~~v~~-d~~ivG~i~lRh~Ln~~ll~~gGHI-GY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~ 140 (174)
T COG3981 70 TYWAVDE-DGQIVGFINLRHQLNDFLLEEGGHI-GYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDK 140 (174)
T ss_pred eEEEEec-CCcEEEEEEeeeecchHHHhcCCcc-cceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4555544 8999999999974332 1111 246899999999999999999999999999999887774
No 122
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=89.89 E-value=0.14 Score=46.40 Aligned_cols=55 Identities=24% Similarity=0.485 Sum_probs=37.8
Q ss_pred EEEEEe-----CCeEeecCCCCCCceeeehhHHHHhccccCC-CCCCcccccCCCcHHHHHHH
Q 002950 240 LDGIVN-----GGGYLCGCPLCNFSKVVSAHEFEQHAGAKTR-HPNNHIYLENGKPIYSIIQE 296 (863)
Q Consensus 240 l~G~i~-----~~gi~C~C~~C~~~~v~s~~~FE~HAGs~~~-~p~~~I~lenG~sL~~v~~~ 296 (863)
++|++- ..|+...|-.+. .+-+||.+||.|||..+. +=-..|.. +|.+|...|++
T Consensus 18 ~~G~L~~~k~~~~g~~~kCI~~~-g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~li~~ 78 (82)
T PF01342_consen 18 VKGTLYKKKFVKQGICGKCIQCE-GRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGKLIEK 78 (82)
T ss_dssp EEEEEEHHHH-TTGTTSS-EEET-TEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHHHHHT
T ss_pred eEEEEEHHHhhcccccCceEeeC-CcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHHHHhh
Confidence 466665 345555566666 588999999999997543 24456777 89999988764
No 123
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=88.48 E-value=0.43 Score=46.87 Aligned_cols=61 Identities=13% Similarity=0.223 Sum_probs=47.2
Q ss_pred eeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecch-----hhHHHHHHhccCcEEcCHHHHHh
Q 002950 777 PLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA-----EKAESIWTKKFGFRKMSRERLLK 838 (863)
Q Consensus 777 p~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~-----~~A~~~w~~kfGF~~i~~~~~~~ 838 (863)
-+|.|-...||.|.+|+|..-+-..+...|..+|++..- +-+..|.- .|||+.+++.++..
T Consensus 88 DRvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHa-alGF~eVG~a~ihg 153 (167)
T COG3818 88 DRVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHA-ALGFHEVGQATIHG 153 (167)
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhh-hcCceEccceEEec
Confidence 344455567999999999999999999999999887533 34445555 99999999865444
No 124
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=86.93 E-value=1.3 Score=41.69 Aligned_cols=48 Identities=23% Similarity=0.240 Sum_probs=41.6
Q ss_pred EeCCeEEEEEEEEEec--CeeEEEeeeeeeccccccChhHHHHHHHHHHH
Q 002950 755 TVKSVVVSAGLLRIFG--REVAELPLVATCREYQGKGCFQALFSCIERLL 802 (863)
Q Consensus 755 ~~~~~vV~aA~lri~g--~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l 802 (863)
+.++...++|.+..-+ .+++-|-.+||.+..||+|+++.|+.+|-+..
T Consensus 14 y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~ 63 (99)
T cd04264 14 YLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF 63 (99)
T ss_pred EEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 5567788888887655 58999999999999999999999999998764
No 125
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=85.71 E-value=1.2 Score=45.76 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=46.8
Q ss_pred eEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccC
Q 002950 773 VAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFG 827 (863)
Q Consensus 773 ~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfG 827 (863)
+||+-+.||+++.+|.|+++.| .++--.|++|||..-+.--.......++ +|+
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~-R~~ 137 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVE-RLC 137 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHH-HHh
Confidence 8999999999999999999976 6899999999999988777777777777 776
No 126
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=82.51 E-value=2.4 Score=42.64 Aligned_cols=59 Identities=15% Similarity=0.216 Sum_probs=43.0
Q ss_pred eEEEeeeeeeccccccChhHHHHHHHHHHHhh-CCccEEEecc--h-hhHHHHHHhccCcEEcC
Q 002950 773 VAELPLVATCREYQGKGCFQALFSCIERLLCS-LNVENLVLPA--A-EKAESIWTKKFGFRKMS 832 (863)
Q Consensus 773 ~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~-lgV~~LvL~A--~-~~A~~~w~~kfGF~~i~ 832 (863)
++|+..+---|..||+|||+..+.++...+.+ +++.....-. + ...+.++. ||+|.-+-
T Consensus 107 ~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFk-k~~f~q~~ 169 (185)
T KOG4135|consen 107 TGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFK-KFLFTQVF 169 (185)
T ss_pred eeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHH-Hhhheeee
Confidence 56777777889999999999999999988755 4555444433 2 34456677 99997654
No 127
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=80.03 E-value=9 Score=40.61 Aligned_cols=84 Identities=18% Similarity=0.165 Sum_probs=68.4
Q ss_pred ecccEEEEEEeCCeEEEEEEEEE---------------------ecCeeEEEeeeeeec--cccccC----hhHHHHHHH
Q 002950 746 FGGMYSVILTVKSVVVSAGLLRI---------------------FGREVAELPLVATCR--EYQGKG----CFQALFSCI 798 (863)
Q Consensus 746 ~~Gfy~~vl~~~~~vV~aA~lri---------------------~g~~~AEip~VAT~~--~~RgqG----~gr~L~~~i 798 (863)
..-.|.+.+..+|+|+|++++-. ..++++|.-++|+.+ .-|++| ....||..+
T Consensus 50 ~~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ 129 (209)
T COG3916 50 LDTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGM 129 (209)
T ss_pred CCceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHH
Confidence 34578888789999999999865 225899999999998 666666 477899999
Q ss_pred HHHHhhCCccEEEecchhhHHHHHHhccCcEE
Q 002950 799 ERLLCSLNVENLVLPAAEKAESIWTKKFGFRK 830 (863)
Q Consensus 799 E~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~ 830 (863)
-+.+...|+.+|+.=+..-.+.+.. +.||..
T Consensus 130 ie~a~~~G~~~IvtVt~~~meril~-r~Gw~~ 160 (209)
T COG3916 130 IEYALARGITGIVTVTDTGMERILR-RAGWPL 160 (209)
T ss_pred HHHHHHcCCceEEEEEchHHHHHHH-HcCCCe
Confidence 9999999999999888877777777 777753
No 128
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=79.21 E-value=11 Score=36.89 Aligned_cols=84 Identities=17% Similarity=0.172 Sum_probs=58.5
Q ss_pred EEEEEeCCeEEEEEEEEE--e-----cCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHH
Q 002950 751 SVILTVKSVVVSAGLLRI--F-----GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWT 823 (863)
Q Consensus 751 ~~vl~~~~~vV~aA~lri--~-----g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~ 823 (863)
.++...+|.+||-+.+-- + +-.++|+=.| ..|||+|+||+..++|-.....+ .+-.+++--.-|..||.
T Consensus 39 ~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi---~k~~~~GvGR~aaK~If~~~~g~-w~Va~i~EN~PA~~fwK 114 (143)
T COG5628 39 AWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIV---RKHRRRGVGRAAAKAIFGSAWGV-WQVATVRENTPARAFWK 114 (143)
T ss_pred eeEEEECCceeeeeeeecccCCCCcccccchheEee---ehhhccchhHHHHHHHHHHhhce-EEEEEeccCChhHHHHH
Confidence 345567899999887632 1 2235555444 48999999999999999887654 45677888889999999
Q ss_pred hccCcEE-cCHHHHHhh
Q 002950 824 KKFGFRK-MSRERLLKY 839 (863)
Q Consensus 824 ~kfGF~~-i~~~~~~~~ 839 (863)
++-+.- +..++.+..
T Consensus 115 -~~~~t~~i~~E~r~d~ 130 (143)
T COG5628 115 -RVAETYPVVEEDRQDA 130 (143)
T ss_pred -hhhcccccchhhhhcc
Confidence 776653 333444443
No 129
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=78.98 E-value=3.7 Score=38.62 Aligned_cols=49 Identities=20% Similarity=0.135 Sum_probs=38.8
Q ss_pred EeCCeEEEEEEEEEec-CeeEEEeeeeeeccccccChhHHHHHHHHHHHh
Q 002950 755 TVKSVVVSAGLLRIFG-REVAELPLVATCREYQGKGCFQALFSCIERLLC 803 (863)
Q Consensus 755 ~~~~~vV~aA~lri~g-~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~ 803 (863)
+.++..=++|.+..-. .+++-|-.+||.+..||+|+++.|+.+|-+...
T Consensus 15 y~~e~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~~ 64 (99)
T cd04265 15 YLSEGYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDFP 64 (99)
T ss_pred EEeCCCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhCC
Confidence 4445555666665544 479999999999999999999999999987753
No 130
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=78.23 E-value=2.4 Score=47.63 Aligned_cols=51 Identities=14% Similarity=0.201 Sum_probs=43.0
Q ss_pred ccccccChhHHHHHHHHHHHhh-CCccEEEecchhhHHHHHHhccCcEEcCHH
Q 002950 783 REYQGKGCFQALFSCIERLLCS-LNVENLVLPAAEKAESIWTKKFGFRKMSRE 834 (863)
Q Consensus 783 ~~~RgqG~gr~L~~~iE~~l~~-lgV~~LvL~A~~~A~~~w~~kfGF~~i~~~ 834 (863)
..||.||||.+||++.|+.|++ .|-..+-+-+.......|. ||||+.-++-
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~-klGY~LdGPY 548 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYR-KLGYELDGPY 548 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHH-hhCeeecChh
Confidence 4699999999999999999985 5667777777778888888 9999987653
No 131
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=77.69 E-value=0.71 Score=37.86 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=25.6
Q ss_pred CcchhhhhhccccccchhhhcchhhHHHHHHHhh
Q 002950 686 TMNDVQWQMLKKAQCFEEKEKSLLSSATAIFREC 719 (863)
Q Consensus 686 ~~y~vkW~lLs~k~~swe~~~~lLs~Al~I~~Ec 719 (863)
.+|+|+|+++++.+++|++...+...+-.++.+.
T Consensus 19 ~~ylVkW~g~~~~~~tWe~~~~l~~~~~~li~~f 52 (55)
T PF00385_consen 19 YEYLVKWKGYPYSENTWEPEENLKNCFPELIEEF 52 (55)
T ss_dssp EEEEEEETTSSGGGEEEEEGGGCSSHCHHHHHHH
T ss_pred EEEEEEECCCCCCCCeEeeHHHHhHhhHHHHHHH
Confidence 3799999999999999996665555545555543
No 132
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=74.37 E-value=9.3 Score=42.57 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=62.3
Q ss_pred EEEEE-eCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhh--HHHHHHhccC
Q 002950 751 SVILT-VKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEK--AESIWTKKFG 827 (863)
Q Consensus 751 ~~vl~-~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~--A~~~w~~kfG 827 (863)
.++++ .+|++|+++.+..++.. +.....++.+++|..+-+-.|+-.+.+.+.+.|++++-+..... -.--|..+||
T Consensus 197 l~~a~~~~g~~va~~l~~~~~~~-~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G 275 (330)
T TIGR03019 197 VLTVRLGDGVVASAVLSFYFRDE-VLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWG 275 (330)
T ss_pred EEEEEeCCCCEEEEEEEEEeCCE-EEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCC
Confidence 34446 68999998887665554 45558889999999999999999999999999999999976532 1223555889
Q ss_pred cEEcC
Q 002950 828 FRKMS 832 (863)
Q Consensus 828 F~~i~ 832 (863)
|+.+.
T Consensus 276 ~~~~~ 280 (330)
T TIGR03019 276 FEPQP 280 (330)
T ss_pred Ceecc
Confidence 88754
No 133
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=73.59 E-value=3 Score=46.32 Aligned_cols=102 Identities=21% Similarity=0.414 Sum_probs=58.6
Q ss_pred cccccc-CCCceeecCCCCCcccccccCCCCCCCCCCCCcccccCCCCCccCcccccCCCCCCCccc------c-ccccc
Q 002950 510 MCHVCG-DGENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAPGAEV------G-GCVIC 581 (863)
Q Consensus 510 ~C~vCg-dgG~Ll~Cd~C~~sfH~~Cl~p~~vp~g~W~C~~C~~~~~~e~~dpIr~~r~~k~~~~e~------~-~C~vC 581 (863)
.|-.|. +++....|-.|.-.+|..-.......++.+.|.-|...+++-.-.+.+-. +.....++ + .| .|
T Consensus 57 sClTC~P~~~~agvC~~C~~~CH~~H~lveL~tKR~FrCDCg~sk~g~~sc~l~~~~--~~~n~~N~YNhNfqG~~C-~C 133 (345)
T KOG2752|consen 57 SCLTCTPAPEMAGVCYACSLSCHDGHELVELYTKRNFRCDCGNSKFGRCSCNLLEDK--DAENSENLYNHNFQGLFC-KC 133 (345)
T ss_pred EeecccCChhhceeEEEeeeeecCCceeeeccccCCccccccccccccccccccccc--ccccchhhhhhhhcceeE-Ee
Confidence 377776 45588889999888887766665566788888866554443221111000 00011110 1 13 33
Q ss_pred cCCCCccchhhhcccCCCccccCCCCceeeccCcccccC-ccccccC
Q 002950 582 RLSPSENFDIRLCRSHDFSAATFDDRTVIYCDQCEKEFH-VGCLRKN 627 (863)
Q Consensus 582 ~~~~~e~~~l~l~r~~d~~~~~~~~~~Ll~CdqC~rayH-v~CL~p~ 627 (863)
.-......-..++.|++|--|+-||| -+|++..
T Consensus 134 -------------d~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 134 -------------DTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred -------------cCCCCCccccccceeeeEEeccchhcccccCccc
Confidence 11111112235789999999999999 8898653
No 134
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=72.85 E-value=2 Score=54.29 Aligned_cols=39 Identities=26% Similarity=0.730 Sum_probs=34.9
Q ss_pred CCCCceeeccCcccccCccccccCCCCCCcCCCCCCceecCCch
Q 002950 604 FDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCN 647 (863)
Q Consensus 604 ~~~~~Ll~CdqC~rayHv~CL~p~g~~~L~evP~g~WfCc~~C~ 647 (863)
-+.+.+++|..|++.||..|..+ ++.+.|+..|-| ..|.
T Consensus 351 ~d~~~~lc~Et~prvvhlEcv~h----P~~~~~s~~~e~-evc~ 389 (1414)
T KOG1473|consen 351 HDLGDLLCCETCPRVVHLECVFH----PRFAVPSAFWEC-EVCN 389 (1414)
T ss_pred CcccceeecccCCceEEeeecCC----ccccCCCccchh-hhhh
Confidence 35778999999999999999987 889999999999 7775
No 135
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=72.80 E-value=1.9 Score=36.34 Aligned_cols=30 Identities=33% Similarity=1.020 Sum_probs=26.1
Q ss_pred cccccccc----CCCceeecCCCCCcccccccCC
Q 002950 508 DDMCHVCG----DGENLLLCNGCPLAFHAACLDP 537 (863)
Q Consensus 508 dd~C~vCg----dgG~Ll~Cd~C~~sfH~~Cl~p 537 (863)
...|.+|+ ++++++.|..|...||..|...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 35799998 4789999999999999999954
No 136
>PRK00756 acyltransferase NodA; Provisional
Probab=68.53 E-value=8 Score=39.66 Aligned_cols=53 Identities=21% Similarity=0.190 Sum_probs=41.0
Q ss_pred eeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhcc
Q 002950 772 EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKF 826 (863)
Q Consensus 772 ~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kf 826 (863)
=+||+-+.||+++..|+|++..+ .++--.|++|||..-+---. .|..-...+|
T Consensus 84 LVaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~FGtVR-~al~~Hv~R~ 136 (196)
T PRK00756 84 LVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAFGTVR-HALRNHVERL 136 (196)
T ss_pred eEEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeecccch-HHHHHHHHHH
Confidence 38999999999999999999977 68999999999998764333 3333333344
No 137
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=66.84 E-value=5.7 Score=46.31 Aligned_cols=64 Identities=22% Similarity=0.497 Sum_probs=38.4
Q ss_pred ccccccCCCCccchhhhcccCCCccccCCCCceeeccCcccccCccccccCCCC----CCcC---CCCCCceecCCchhh
Q 002950 577 GCVICRLSPSENFDIRLCRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLC----DLKE---IPKDKWFCCDDCNRI 649 (863)
Q Consensus 577 ~C~vC~~~~~e~~~l~l~r~~d~~~~~~~~~~Ll~CdqC~rayHv~CL~p~g~~----~L~e---vP~g~WfCc~~C~~i 649 (863)
.|.+| .+.|+.. ++-.-+.||-|+.|.|..|.-..++. .... ..+..++| .-|...
T Consensus 130 ~C~iC-------------~kfD~~~---n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C-~~C~~~ 192 (446)
T PF07227_consen 130 MCCIC-------------SKFDDNK---NTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHC-RACGKT 192 (446)
T ss_pred Ccccc-------------CCcccCC---CCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEc-cCCCCh
Confidence 69999 5554432 45567899999999999996443321 1111 12334555 889754
Q ss_pred ---HHhhhhhh
Q 002950 650 ---HAALQDFV 657 (863)
Q Consensus 650 ---~~~Lq~ll 657 (863)
.+-+++.+
T Consensus 193 seLlG~vk~vf 203 (446)
T PF07227_consen 193 SELLGFVKKVF 203 (446)
T ss_pred hhHHHHHHHHH
Confidence 34444444
No 138
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=66.75 E-value=4.4 Score=35.91 Aligned_cols=28 Identities=11% Similarity=0.112 Sum_probs=24.4
Q ss_pred EEeeeeeeccccccChhHHHHHHHHHHH
Q 002950 775 ELPLVATCREYQGKGCFQALFSCIERLL 802 (863)
Q Consensus 775 Eip~VAT~~~~RgqG~gr~L~~~iE~~l 802 (863)
-|.+|=|.+.+|++|++++||+++-+..
T Consensus 7 GI~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 7 GISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EeEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 4678889999999999999999987653
No 139
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=64.71 E-value=28 Score=34.27 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=52.4
Q ss_pred ccEEEEEEeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEe
Q 002950 748 GMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 812 (863)
Q Consensus 748 Gfy~~vl~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL 812 (863)
|-+-+-.+.+|++||+|.+-+..+.+.-|=.+- +|++...++|...+-.-.++++++|.+.+-|
T Consensus 38 ~t~~~~~~~~~kLiav~v~D~l~~glSaVY~fy-DPd~~~~SlG~~~iL~eI~~a~~~~l~y~YL 101 (128)
T PF04377_consen 38 GTYHLEYRLDGKLIAVAVVDILPDGLSAVYTFY-DPDYSKRSLGTYSILREIELARELGLPYYYL 101 (128)
T ss_pred CCEEEEEEeCCeEEEEEEeecccchhhheeeee-CCCccccCcHHHHHHHHHHHHHHcCCCEEee
Confidence 444455568999999999998877765554444 7999999999999999999999999999884
No 140
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=63.32 E-value=3.9 Score=38.35 Aligned_cols=24 Identities=42% Similarity=0.905 Sum_probs=20.7
Q ss_pred CCceeeccC--cccccCccccccCCC
Q 002950 606 DRTVIYCDQ--CEKEFHVGCLRKNGL 629 (863)
Q Consensus 606 ~~~Ll~Cdq--C~rayHv~CL~p~g~ 629 (863)
.|..+.|.. |.++||+.|....|.
T Consensus 65 ~G~~i~C~~~~C~~~fH~~CA~~~g~ 90 (110)
T PF13832_consen 65 GGACIKCSHPGCSTAFHPTCARKAGL 90 (110)
T ss_pred CceeEEcCCCCCCcCCCHHHHHHCCC
Confidence 577999998 999999999987654
No 141
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=63.30 E-value=6.5 Score=46.47 Aligned_cols=48 Identities=27% Similarity=0.540 Sum_probs=40.2
Q ss_pred CCccccccccccCCCceeecCCCCCcccccccCCCCCCCCCCCCccccc
Q 002950 504 TGGSDDMCHVCGDGENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQ 552 (863)
Q Consensus 504 ~~~~dd~C~vCgdgG~Ll~Cd~C~~sfH~~Cl~p~~vp~g~W~C~~C~~ 552 (863)
...+.+.|.+|.++|.+++|+.|..++|..|... ..++..|.|..|..
T Consensus 85 ~~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~-~~~~c~~~~~d~~~ 132 (463)
T KOG1081|consen 85 PKIEPSECFVCFKGGSLVTCKSRIQAPHRKCKPA-QLEKCSKRCTDCRA 132 (463)
T ss_pred cCCCcchhccccCCCccceeccccccccccCcCc-cCcccccCCcceee
Confidence 4567789999999999999999999999999865 45677788887764
No 142
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=62.36 E-value=29 Score=36.45 Aligned_cols=86 Identities=15% Similarity=0.034 Sum_probs=48.0
Q ss_pred chhhHHHHHHHhhccccccccCCCccccccccccCCCceecccEEEEEEeCCe--EEEEEEEEEecCeeEEEeeeeeecc
Q 002950 707 SLLSSATAIFRECFDPIIAECGRDLIPVMVYGRNISGQEFGGMYSVILTVKSV--VVSAGLLRIFGREVAELPLVATCRE 784 (863)
Q Consensus 707 ~lLs~Al~I~~EcF~Pi~~~Sg~DlIp~Mvyg~~~~~~~~~Gfy~~vl~~~~~--vV~aA~lri~g~~~AEip~VAT~~~ 784 (863)
.+..+-|.++-..|. ..+| +| -+.+---||++...+++. +||-=+---...+---|--|-|.|.
T Consensus 26 ~~yCqnLcLlaKLFL--d~Kt--------ly----ydv~~F~FYVl~e~d~~g~h~vGyFSKEk~s~~~~NLsCIl~lP~ 91 (188)
T PF01853_consen 26 KLYCQNLCLLAKLFL--DHKT--------LY----YDVDPFLFYVLTEKDDDGFHIVGYFSKEKESWDNNNLSCILTLPP 91 (188)
T ss_dssp HHHHHHHHHHHHTT---SSGC--------CT----T-STTEEEEEEEEEETTEEEEEEEEEEESS-TT-EEESEEEE-GG
T ss_pred chHHHHHHHHHHHHh--hCeE--------EE----eecCceEEEEEEEecCccceeEEEEEEEecccCCeeEeehhhcch
Confidence 467888888888881 0222 11 111222366665454433 2221111111122235667889999
Q ss_pred ccccChhHHHHHHHHHHHhhCC
Q 002950 785 YQGKGCFQALFSCIERLLCSLN 806 (863)
Q Consensus 785 ~RgqG~gr~L~~~iE~~l~~lg 806 (863)
||++|||+.|++.-=.+++.-|
T Consensus 92 yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 92 YQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp GTTSSHHHHHHHHHHHHHHHTT
T ss_pred hhhcchhhhhhhhHHHHhhccC
Confidence 9999999999998766666544
No 143
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=62.25 E-value=33 Score=35.15 Aligned_cols=65 Identities=14% Similarity=0.204 Sum_probs=48.7
Q ss_pred cccEEEEEEe--CCeEEE-----EEEEEEecC--eeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEE
Q 002950 747 GGMYSVILTV--KSVVVS-----AGLLRIFGR--EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLV 811 (863)
Q Consensus 747 ~Gfy~~vl~~--~~~vV~-----aA~lri~g~--~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~Lv 811 (863)
.-.|.+.+.. ++++|| .+.+||.+. .++||=++.+++.+|.+++.=.|+.+|-+.+...||-.-+
T Consensus 75 ~~~whiGVR~~~~~kLvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~qAv 148 (162)
T PF01233_consen 75 KKEWHIGVRVKSSKKLVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQAV 148 (162)
T ss_dssp -GGGEEEEEETTTTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EEE
T ss_pred ccceEEEEEECCCCEEEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCceeee
Confidence 3344444443 577766 467888876 6999999999999999999999999999999998886544
No 144
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=60.91 E-value=17 Score=33.60 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=21.4
Q ss_pred CeeEEEeeeeeeccccccChhHHHH
Q 002950 771 REVAELPLVATCREYQGKGCFQALF 795 (863)
Q Consensus 771 ~~~AEip~VAT~~~~RgqG~gr~L~ 795 (863)
..++||-++||.++||+...-..|.
T Consensus 76 ~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 76 RRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred CcEEEeehheECHhHCCChHHHHHh
Confidence 3689999999999999998777664
No 145
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=60.13 E-value=5.6 Score=44.08 Aligned_cols=32 Identities=44% Similarity=0.771 Sum_probs=29.4
Q ss_pred ceecCCCCccccccccccccCccccCCCCcce
Q 002950 450 GIVCDCCNKEISPSQFEAHAGMAARRQPYRHI 481 (863)
Q Consensus 450 gI~C~cC~~~~Sps~FE~hAG~~~~R~Py~~I 481 (863)
.|.|.|=+.-+||.+|-.|||...--+|..||
T Consensus 252 ~i~c~chg~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 252 RIVCVCHGSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred EEEEEecCCCCCHHHHHHhcCCCCcCCchhcc
Confidence 58999999999999999999998888898887
No 146
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=59.56 E-value=11 Score=41.89 Aligned_cols=31 Identities=35% Similarity=0.677 Sum_probs=25.8
Q ss_pred eEeecCCCCCCceeeehhHHHHhcccc-CCCCCCcc
Q 002950 248 GYLCGCPLCNFSKVVSAHEFEQHAGAK-TRHPNNHI 282 (863)
Q Consensus 248 gi~C~C~~C~~~~v~s~~~FE~HAGs~-~~~p~~~I 282 (863)
-|.|-|. -..|||.+|=.|||.. .-||-.||
T Consensus 252 ~i~c~ch----g~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 252 RIVCVCH----GSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred EEEEEec----CCCCCHHHHHHhcCCCCcCCchhcc
Confidence 4889997 5689999999999964 56888887
No 147
>PRK14852 hypothetical protein; Provisional
Probab=59.27 E-value=26 Score=45.03 Aligned_cols=85 Identities=16% Similarity=0.124 Sum_probs=66.3
Q ss_pred EEEEEEeCCeEEEEEEEEE----------------------ecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCc
Q 002950 750 YSVILTVKSVVVSAGLLRI----------------------FGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNV 807 (863)
Q Consensus 750 y~~vl~~~~~vV~aA~lri----------------------~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV 807 (863)
++++.-..+++|++.++.+ -|..++|+-++|+++..|.+=+--.|+..+-..+...++
T Consensus 76 ~~~i~k~~~~~l~T~t~~~ds~~~Gl~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~ 155 (989)
T PRK14852 76 SVFIFKSYHDVLCTLTHIPDSGLFGLPMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEV 155 (989)
T ss_pred eEEEeccCCcEEEEEEEecCCcccCcCHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCC
Confidence 3455545567777777655 235799999999988777766555677777666777899
Q ss_pred cEEEecchhhHHHHHHhccCcEEcCHH
Q 002950 808 ENLVLPAAEKAESIWTKKFGFRKMSRE 834 (863)
Q Consensus 808 ~~LvL~A~~~A~~~w~~kfGF~~i~~~ 834 (863)
..+++---+.=..||+.-|||+.+++.
T Consensus 156 dd~~i~VnPkH~~FY~r~l~f~~ig~~ 182 (989)
T PRK14852 156 DDILVTVNPKHVKFYTDIFLFKPFGEV 182 (989)
T ss_pred CeEEEEECcchHHHHHHHhCCcccccc
Confidence 999999999999999999999999863
No 148
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=56.47 E-value=4.9 Score=36.90 Aligned_cols=33 Identities=33% Similarity=0.656 Sum_probs=21.7
Q ss_pred ceeecCCCCCcccccccCCC-CCCCCCCCCccccc
Q 002950 519 NLLLCNGCPLAFHAACLDPL-LIPESGWRCPNCRQ 552 (863)
Q Consensus 519 ~Ll~Cd~C~~sfH~~Cl~p~-~vp~g~W~C~~C~~ 552 (863)
.++.+. |...||..|+.-- +.....=.||.|+.
T Consensus 46 plv~g~-C~H~FH~hCI~kWl~~~~~~~~CPmCR~ 79 (85)
T PF12861_consen 46 PLVWGK-CSHNFHMHCILKWLSTQSSKGQCPMCRQ 79 (85)
T ss_pred ceeecc-CccHHHHHHHHHHHccccCCCCCCCcCC
Confidence 444444 9999999998742 11223458998875
No 149
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=53.21 E-value=23 Score=36.90 Aligned_cols=71 Identities=21% Similarity=0.377 Sum_probs=58.0
Q ss_pred eCCeEEEEEEEEEec----------------------------CeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCc
Q 002950 756 VKSVVVSAGLLRIFG----------------------------REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNV 807 (863)
Q Consensus 756 ~~~~vV~aA~lri~g----------------------------~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV 807 (863)
.+|++++|+-+|.-. ..++||-=+|.. +.|.++.|+..|-..|...|+
T Consensus 42 ~~g~l~aa~G~r~A~~~~LFlEqYLd~piE~~l~~~~g~~v~R~~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g~ 117 (179)
T PF12261_consen 42 SDGELVAAAGLRFASQEPLFLEQYLDQPIEQLLSRRFGRPVSRSQIVEVGNLASF----SPGAARLLFAALAQLLAQQGF 117 (179)
T ss_pred CCCCEEEEEeecccCCCCcchhhhcCCcHHHHHHhhcCCCcchhheeEeechhhc----CcccHHHHHHHHHHHHHHCCC
Confidence 457788888877733 246777766644 589999999999999999999
Q ss_pred cEEEecchhhHHHHHHhccCcEEc
Q 002950 808 ENLVLPAAEKAESIWTKKFGFRKM 831 (863)
Q Consensus 808 ~~LvL~A~~~A~~~w~~kfGF~~i 831 (863)
+.++.-|......... ++|....
T Consensus 118 ~w~vfTaT~~lr~~~~-rlgl~~~ 140 (179)
T PF12261_consen 118 EWVVFTATRQLRNLFR-RLGLPPT 140 (179)
T ss_pred CEEEEeCCHHHHHHHH-HcCCCce
Confidence 9999999999999998 9987654
No 150
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=50.53 E-value=33 Score=38.24 Aligned_cols=32 Identities=28% Similarity=0.187 Sum_probs=26.3
Q ss_pred EEeeeeeeccccccChhHHHHHHHHHHHhhCC
Q 002950 775 ELPLVATCREYQGKGCFQALFSCIERLLCSLN 806 (863)
Q Consensus 775 Eip~VAT~~~~RgqG~gr~L~~~iE~~l~~lg 806 (863)
-|--|-|.|.||++|||+.|++.-=.+.+.-|
T Consensus 157 NLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 157 NLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred cEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 36678899999999999999987766665554
No 151
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=49.48 E-value=81 Score=34.36 Aligned_cols=58 Identities=7% Similarity=-0.005 Sum_probs=48.3
Q ss_pred EEeCCeEEEEEEEEEecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEe
Q 002950 754 LTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 812 (863)
Q Consensus 754 l~~~~~vV~aA~lri~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL 812 (863)
.+.+|++||+|.+-+..+.+--|=.+- +|+|-..++|...+..-.++++++|.+.+-|
T Consensus 149 y~~~g~LiaVav~D~l~d~lSAVY~Fy-DPd~~~~SLG~~~iL~qI~~ak~~gl~y~YL 206 (240)
T PRK01305 149 FRGDGKLVAVAVTDVLDDGLSAVYTFY-DPDEEHRSLGTFAILWQIELAKRLGLPYVYL 206 (240)
T ss_pred EEeCCeEEEEEEEeccCCceeeEEEee-CCCccccCCHHHHHHHHHHHHHHcCCCeEee
Confidence 347899999999999888876654433 7999888999998888889999999998874
No 152
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=48.48 E-value=11 Score=38.65 Aligned_cols=45 Identities=22% Similarity=0.644 Sum_probs=29.8
Q ss_pred CCCceeeccCcccccCccccccCCC-C-CCcCCCCCCc--eecCCchhhH
Q 002950 605 DDRTVIYCDQCEKEFHVGCLRKNGL-C-DLKEIPKDKW--FCCDDCNRIH 650 (863)
Q Consensus 605 ~~~~Ll~CdqC~rayHv~CL~p~g~-~-~L~evP~g~W--fCc~~C~~i~ 650 (863)
..|.|+.|..|..+||..||.+... + ....+-.+.+ .| ..|..+.
T Consensus 13 ~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQC-r~Cig~~ 61 (175)
T PF15446_consen 13 NKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQC-RRCIGIA 61 (175)
T ss_pred cCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEec-hhhcChh
Confidence 4679999999999999999976532 1 1223334443 44 6665554
No 153
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=46.78 E-value=9.4 Score=35.76 Aligned_cols=31 Identities=32% Similarity=0.831 Sum_probs=26.9
Q ss_pred cccccccccC-CCceeecCC--CCCcccccccCC
Q 002950 507 SDDMCHVCGD-GENLLLCNG--CPLAFHAACLDP 537 (863)
Q Consensus 507 ~dd~C~vCgd-gG~Ll~Cd~--C~~sfH~~Cl~p 537 (863)
....|.+|+. .|..+-|.. |...||..|+..
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCCCCCcCCCHHHHHH
Confidence 4568999996 688999998 999999999864
No 154
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=45.76 E-value=8.4 Score=31.07 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=19.1
Q ss_pred Ccchhhhhhccccccchhhhcch
Q 002950 686 TMNDVQWQMLKKAQCFEEKEKSL 708 (863)
Q Consensus 686 ~~y~vkW~lLs~k~~swe~~~~l 708 (863)
.+|+|+|+++++.+++|++...+
T Consensus 20 ~~y~VkW~g~~~~~~tWe~~~~l 42 (55)
T cd00024 20 YEYLVKWKGYSYSEDTWEPEENL 42 (55)
T ss_pred EEEEEEECCCCCccCccccHHHh
Confidence 57999999999999999954433
No 155
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=44.34 E-value=19 Score=41.58 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=21.3
Q ss_pred EeeeeeeccccccChhHHHHHHHHH
Q 002950 776 LPLVATCREYQGKGCFQALFSCIER 800 (863)
Q Consensus 776 ip~VAT~~~~RgqG~gr~L~~~iE~ 800 (863)
|--|-|.|.||++|||+.|++.==.
T Consensus 263 laCILtLPpyQRkGYGklLIdFSYe 287 (396)
T KOG2747|consen 263 LACILTLPPYQRKGYGKLLIDFSYE 287 (396)
T ss_pred eeeeeecChhhhcccchhhhhhhhh
Confidence 7788999999999999999875433
No 156
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=42.87 E-value=21 Score=43.90 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=26.1
Q ss_pred EEEeeeeeeccccccChhHHHHHHHHHHHh
Q 002950 774 AELPLVATCREYQGKGCFQALFSCIERLLC 803 (863)
Q Consensus 774 AEip~VAT~~~~RgqG~gr~L~~~iE~~l~ 803 (863)
|.|-+|||+|+|++-|||.+-++-+.+...
T Consensus 615 aRIVRIAvhP~y~~MGYGsrAvqLL~~y~e 644 (1011)
T KOG2036|consen 615 ARIVRIAVHPEYQKMGYGSRAVQLLTDYFE 644 (1011)
T ss_pred ceEEEEEeccchhccCccHHHHHHHHHHHh
Confidence 567899999999999999998888887654
No 157
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=42.19 E-value=15 Score=30.99 Aligned_cols=26 Identities=31% Similarity=0.883 Sum_probs=21.7
Q ss_pred CCCceeeccCcccccCccccccCCCC
Q 002950 605 DDRTVIYCDQCEKEFHVGCLRKNGLC 630 (863)
Q Consensus 605 ~~~~Ll~CdqC~rayHv~CL~p~g~~ 630 (863)
+++.++.|..|..-||-.|....|..
T Consensus 17 ~~dDiVvCp~CgapyHR~C~~~~g~C 42 (54)
T PF14446_consen 17 DGDDIVVCPECGAPYHRDCWEKAGGC 42 (54)
T ss_pred CCCCEEECCCCCCcccHHHHhhCCce
Confidence 46789999999999999998765543
No 158
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=41.34 E-value=18 Score=43.07 Aligned_cols=47 Identities=23% Similarity=0.373 Sum_probs=39.5
Q ss_pred ccccccccccCCCceeecCCCCCcccccccCCC-CCC--CCCCCCccccc
Q 002950 506 GSDDMCHVCGDGENLLLCNGCPLAFHAACLDPL-LIP--ESGWRCPNCRQ 552 (863)
Q Consensus 506 ~~dd~C~vCgdgG~Ll~Cd~C~~sfH~~Cl~p~-~vp--~g~W~C~~C~~ 552 (863)
..+.+|+.|.-.|..+.|+.|-|+||..|+.+. +.+ ...|.|+.|..
T Consensus 58 N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s 107 (588)
T KOG3612|consen 58 NIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYS 107 (588)
T ss_pred CCCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCcccc
Confidence 345789999999999999999999999999985 333 46799998876
No 159
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=40.88 E-value=13 Score=33.41 Aligned_cols=31 Identities=23% Similarity=0.640 Sum_probs=27.1
Q ss_pred cccccccccCC-CceeecCC--CCCcccccccCC
Q 002950 507 SDDMCHVCGDG-ENLLLCNG--CPLAFHAACLDP 537 (863)
Q Consensus 507 ~dd~C~vCgdg-G~Ll~Cd~--C~~sfH~~Cl~p 537 (863)
....|.+|+.. |-.+-|.. |.+.||..|..-
T Consensus 35 ~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 35 RKLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred hCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 34589999988 99999987 999999999875
No 160
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.14 E-value=21 Score=40.66 Aligned_cols=43 Identities=33% Similarity=0.762 Sum_probs=31.2
Q ss_pred cccccccC---CCceeecCCCCCcccccccCCCCCCCCCCCCccccc
Q 002950 509 DMCHVCGD---GENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQ 552 (863)
Q Consensus 509 d~C~vCgd---gG~Ll~Cd~C~~sfH~~Cl~p~~vp~g~W~C~~C~~ 552 (863)
+.|.+|-+ .|+.+.=--|...||..|+++.-... .=+||-|+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKR 275 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCC
Confidence 59999974 35555446799999999999854332 346888875
No 161
>PTZ00064 histone acetyltransferase; Provisional
Probab=38.41 E-value=45 Score=39.74 Aligned_cols=32 Identities=25% Similarity=0.169 Sum_probs=26.2
Q ss_pred EEeeeeeeccccccChhHHHHHHHHHHHhhCC
Q 002950 775 ELPLVATCREYQGKGCFQALFSCIERLLCSLN 806 (863)
Q Consensus 775 Eip~VAT~~~~RgqG~gr~L~~~iE~~l~~lg 806 (863)
-|--|-|.|.||++|||+.|++.==.+.+.-|
T Consensus 386 NLACILtLPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 386 NLACILTLPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred ceEEEEecchhhhcchhhhhhhhhhhhhhhcC
Confidence 46678899999999999999987766665544
No 162
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=37.87 E-value=12 Score=30.03 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=23.1
Q ss_pred CcchhhhhhccccccchhhhcchhhHHHHHHHh
Q 002950 686 TMNDVQWQMLKKAQCFEEKEKSLLSSATAIFRE 718 (863)
Q Consensus 686 ~~y~vkW~lLs~k~~swe~~~~lLs~Al~I~~E 718 (863)
..|+|+|+++++.+++|++...+. .+...+.+
T Consensus 18 ~~ylVkW~g~~~~~~tW~~~~~l~-~~~~~v~~ 49 (55)
T smart00298 18 LEYLVKWKGYSYSEDTWEPEENLL-NCSKKLDN 49 (55)
T ss_pred EEEEEEECCCCCccCceeeHHHHH-HHHHHHHH
Confidence 579999999999999999544333 25555444
No 163
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=36.72 E-value=4.7 Score=31.61 Aligned_cols=40 Identities=35% Similarity=0.855 Sum_probs=24.1
Q ss_pred cccccccC----CCceeecCCCCCcccccccCCCCCCCCCCCCcccc
Q 002950 509 DMCHVCGD----GENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCR 551 (863)
Q Consensus 509 d~C~vCgd----gG~Ll~Cd~C~~sfH~~Cl~p~~vp~g~W~C~~C~ 551 (863)
|.|.+|.+ +...+... |...||..|+..... ....||.|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~--~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLK--RNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHH--HSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHH--hCCcCCccC
Confidence 56888864 23444444 999999999875211 123777773
No 164
>PLN03239 histone acetyltransferase; Provisional
Probab=35.42 E-value=68 Score=36.72 Aligned_cols=32 Identities=22% Similarity=0.082 Sum_probs=25.8
Q ss_pred EEeeeeeeccccccChhHHHHHHHHHHHhhCC
Q 002950 775 ELPLVATCREYQGKGCFQALFSCIERLLCSLN 806 (863)
Q Consensus 775 Eip~VAT~~~~RgqG~gr~L~~~iE~~l~~lg 806 (863)
-|--|-|.|.||++|||+.|++.-=.+.+.-|
T Consensus 215 NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 215 NLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred ceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 36678899999999999999987666655544
No 165
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=35.28 E-value=16 Score=42.82 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=45.8
Q ss_pred ecCeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEec-------chhh-HHHHHHhccCcEEcC
Q 002950 769 FGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLP-------AAEK-AESIWTKKFGFRKMS 832 (863)
Q Consensus 769 ~g~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~-------A~~~-A~~~w~~kfGF~~i~ 832 (863)
.....|.|-+|.|+|+||+-|+|++-|.+.-++..+--++.+.-- ||.- .-+|++ +-||.-+=
T Consensus 237 ~ntaaariarvvvhpdyr~dglg~~sv~~a~ewI~eRriPEmr~rkHlvetiaqmarynpffe-~~gfkylw 307 (593)
T COG2401 237 CNTAAARIARVVVHPDYRADGLGQLSVIAALEWIIERRIPEMRPRKHLVETIAQMARYNPFFE-KVGFKYLW 307 (593)
T ss_pred hhhhhhheeEEEeccccccCccchhHHHHHHHHHHHhhChhhhhhhhHHHHHHHHHhcCchhh-hhceeeee
Confidence 344567889999999999999999999998888887777654422 2221 125566 88997653
No 166
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=35.08 E-value=39 Score=39.86 Aligned_cols=32 Identities=25% Similarity=0.165 Sum_probs=24.7
Q ss_pred EEeeeeeeccccccChhHHHHHHHHHHHhhCC
Q 002950 775 ELPLVATCREYQGKGCFQALFSCIERLLCSLN 806 (863)
Q Consensus 775 Eip~VAT~~~~RgqG~gr~L~~~iE~~l~~lg 806 (863)
-|--|-|.|.||++|||+.|++.-=.+.+.-|
T Consensus 308 NLaCIltlP~yQrkGyG~~LI~~SYeLSr~eg 339 (450)
T PLN00104 308 NLACILTLPPYQRKGYGKFLIAFSYELSKREG 339 (450)
T ss_pred ceEEEEecchhhhcchhheehhheehhhhccC
Confidence 46778899999999999999986555444433
No 167
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=35.03 E-value=15 Score=44.39 Aligned_cols=39 Identities=33% Similarity=0.815 Sum_probs=29.2
Q ss_pred cCCCCceeeccCcccccCccccccCCCCCCcCCCCCCceecCCchhhHHhh
Q 002950 603 TFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIHAAL 653 (863)
Q Consensus 603 ~~~~~~Ll~CdqC~rayHv~CL~p~g~~~L~evP~g~WfCc~~C~~i~~~L 653 (863)
.|..++...|+.|...||..|++... .||+-|.++...-
T Consensus 525 PF~~~~~~rC~~C~avfH~~C~~r~s------------~~CPrC~R~q~r~ 563 (580)
T KOG1829|consen 525 PFETRNTRRCSTCLAVFHKKCLRRKS------------PCCPRCERRQKRA 563 (580)
T ss_pred ccccccceeHHHHHHHHHHHHHhccC------------CCCCchHHHHHHh
Confidence 34567788999999999999997521 1348998877553
No 168
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=34.15 E-value=21 Score=32.12 Aligned_cols=24 Identities=42% Similarity=0.876 Sum_probs=19.6
Q ss_pred CCceeecc--CcccccCccccccCCC
Q 002950 606 DRTVIYCD--QCEKEFHVGCLRKNGL 629 (863)
Q Consensus 606 ~~~Ll~Cd--qC~rayHv~CL~p~g~ 629 (863)
.|..+.|. .|.+.||+.|....+.
T Consensus 46 ~Ga~i~C~~~~C~~~fH~~CA~~~~~ 71 (90)
T PF13771_consen 46 GGACIGCSHPGCSRSFHVPCARKAGC 71 (90)
T ss_pred CCeEEEEeCCCCCcEEChHHHccCCe
Confidence 36789998 5999999999876553
No 169
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=33.62 E-value=61 Score=37.10 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=48.2
Q ss_pred cEEEEEEe--CCeEEEEEEEEE---------------------------------ec---CeeEEEeeeeeeccccccCh
Q 002950 749 MYSVILTV--KSVVVSAGLLRI---------------------------------FG---REVAELPLVATCREYQGKGC 790 (863)
Q Consensus 749 fy~~vl~~--~~~vV~aA~lri---------------------------------~g---~~~AEip~VAT~~~~RgqG~ 790 (863)
.|.+||++ .|+||||+.|.. .. ++-.||--+-++++||+-|.
T Consensus 59 ~YlfVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~ 138 (342)
T PF04958_consen 59 GYLFVLEDTETGEVVGTSAIEAAVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGN 138 (342)
T ss_dssp EEEEEEEETTT--EEEEEEEESSTTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHH
T ss_pred ceEEEEEecCCCcEEEEEeEEeccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCch
Confidence 59999995 599999998754 00 35678999999999999999
Q ss_pred hHHHHHHHHHHHhh---CCccEEEecch-----hhHHHHHHhccCcEEc
Q 002950 791 FQALFSCIERLLCS---LNVENLVLPAA-----EKAESIWTKKFGFRKM 831 (863)
Q Consensus 791 gr~L~~~iE~~l~~---lgV~~LvL~A~-----~~A~~~w~~kfGF~~i 831 (863)
|+.|-.+=--..+. .=-++++..=. .---|||. .+|-+-.
T Consensus 139 G~lLSr~RfLFiA~~~~rF~~~viAElrG~~De~G~SPFWd-alG~~FF 186 (342)
T PF04958_consen 139 GRLLSRSRFLFIAQHRERFADRVIAELRGVSDEDGRSPFWD-ALGRHFF 186 (342)
T ss_dssp HHHHHHHHHHHHHH-GGGS-SEEEEE--B---TT---HHHH-HTGGGTS
T ss_pred HHHHHHHHHHHHHhChhhcchheeeeccCCcCCCCCCchHH-Hhhcccc
Confidence 98885542221111 11123332211 24469999 8874433
No 170
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=32.69 E-value=31 Score=36.29 Aligned_cols=38 Identities=26% Similarity=0.868 Sum_probs=29.7
Q ss_pred cccccccccCCC--------ceeecCCCCCcccccccCCCCCCCCCCCCcccc
Q 002950 507 SDDMCHVCGDGE--------NLLLCNGCPLAFHAACLDPLLIPESGWRCPNCR 551 (863)
Q Consensus 507 ~dd~C~vCgdgG--------~Ll~Cd~C~~sfH~~Cl~p~~vp~g~W~C~~C~ 551 (863)
..-.|.+|.+.+ ....|..|...||..|... -.||.|.
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-------~~CpkC~ 196 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-------KSCPKCA 196 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-------CCCCCcH
Confidence 346788887543 5689999999999999974 2399885
No 171
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=31.29 E-value=95 Score=35.49 Aligned_cols=50 Identities=16% Similarity=0.109 Sum_probs=39.1
Q ss_pred cccEEEEEEe--CCeEEEEEEEEEe---------------------------------c---CeeEEEeeeeeecccccc
Q 002950 747 GGMYSVILTV--KSVVVSAGLLRIF---------------------------------G---REVAELPLVATCREYQGK 788 (863)
Q Consensus 747 ~Gfy~~vl~~--~~~vV~aA~lri~---------------------------------g---~~~AEip~VAT~~~~Rgq 788 (863)
..-|.+||++ .|+|||++.|... . ++..||--+-++++||+-
T Consensus 53 ~~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~ 132 (336)
T TIGR03244 53 EQGYLFVLEDTETGTVAGVSAIEAAVGLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKG 132 (336)
T ss_pred CccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCC
Confidence 3578899985 5899999887650 0 356788889999999999
Q ss_pred ChhHHHHH
Q 002950 789 GCFQALFS 796 (863)
Q Consensus 789 G~gr~L~~ 796 (863)
|.|+.|-.
T Consensus 133 ~~G~LLSr 140 (336)
T TIGR03244 133 GNGRLLSK 140 (336)
T ss_pred cchhhHHH
Confidence 99887744
No 172
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=30.75 E-value=27 Score=30.70 Aligned_cols=20 Identities=35% Similarity=0.830 Sum_probs=8.4
Q ss_pred Cceeecc--CcccccCcccccc
Q 002950 607 RTVIYCD--QCEKEFHVGCLRK 626 (863)
Q Consensus 607 ~~Ll~Cd--qC~rayHv~CL~p 626 (863)
...+.|+ +|.+.||..||..
T Consensus 18 ~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 18 IPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp ---B--S-TT----B-SGGGHH
T ss_pred cCceEcCCcccCCHHHHHHHHH
Confidence 3568898 9999999999853
No 173
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=30.35 E-value=78 Score=36.32 Aligned_cols=78 Identities=17% Similarity=0.311 Sum_probs=59.0
Q ss_pred cEEEEEEeC--CeEEE-----EEEEEEecC--eeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccE------EEec
Q 002950 749 MYSVILTVK--SVVVS-----AGLLRIFGR--EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVEN------LVLP 813 (863)
Q Consensus 749 fy~~vl~~~--~~vV~-----aA~lri~g~--~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~------LvL~ 813 (863)
-|.+.+... .++|| .+++||.|. .++||-++.|++..|++++.=.|+.+|-+...--||-+ ++||
T Consensus 134 ~WHiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~yTaGvvLp 213 (421)
T KOG2779|consen 134 EWHIGVRVKSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAAYTAGVVLP 213 (421)
T ss_pred ceEEEEEEecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHhhhcceeec
Confidence 455554443 35555 468899887 68999999999999999999999999988776666643 6777
Q ss_pred chhhHHHHHHhcc
Q 002950 814 AAEKAESIWTKKF 826 (863)
Q Consensus 814 A~~~A~~~w~~kf 826 (863)
+-...-..|-+.|
T Consensus 214 ~PVstcRY~HRsL 226 (421)
T KOG2779|consen 214 KPVSTCRYWHRSL 226 (421)
T ss_pred cccchhhhhhccC
Confidence 7766677776544
No 174
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=30.10 E-value=35 Score=43.70 Aligned_cols=47 Identities=38% Similarity=1.053 Sum_probs=37.8
Q ss_pred ccccccccccCCC--ceeecCCCCCcccccccCCC--CCCCCCCCCccccc
Q 002950 506 GSDDMCHVCGDGE--NLLLCNGCPLAFHAACLDPL--LIPESGWRCPNCRQ 552 (863)
Q Consensus 506 ~~dd~C~vCgdgG--~Ll~Cd~C~~sfH~~Cl~p~--~vp~g~W~C~~C~~ 552 (863)
.....|..|..+. .++.|++|...+|..|..++ .++++.|.|+.|..
T Consensus 153 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (904)
T KOG1246|consen 153 IDYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIP 203 (904)
T ss_pred ccchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCcccc
Confidence 3446688887554 33499999999999999974 78899999999975
No 175
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=30.03 E-value=28 Score=39.74 Aligned_cols=47 Identities=23% Similarity=0.568 Sum_probs=35.5
Q ss_pred ceeeccCcccccCccccccCCCCCCcCCCCCCceecCCchhhHHhhhhh
Q 002950 608 TVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIHAALQDF 656 (863)
Q Consensus 608 ~Ll~CdqC~rayHv~CL~p~g~~~L~evP~g~WfCc~~C~~i~~~Lq~l 656 (863)
-++.|+.|..|||..|- +.+++..+..+...|+| ..|......++..
T Consensus 74 ~~~~cd~C~~~~~~ec~-~v~~~~~e~p~~~~~~c-~~c~~~~~~~~~~ 120 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECW-EVGTAEKEAPKEDPKVC-DECKEAQDGMSES 120 (345)
T ss_pred hhhcccccccccccccc-ccCchhhcCCccccccc-cccchhhhhhhhh
Confidence 67899999999999993 22334455556788999 9999888666544
No 176
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=30.01 E-value=98 Score=35.36 Aligned_cols=50 Identities=16% Similarity=0.109 Sum_probs=39.5
Q ss_pred cccEEEEEEe--CCeEEEEEEEEEe---------------------------------c---CeeEEEeeeeeecccccc
Q 002950 747 GGMYSVILTV--KSVVVSAGLLRIF---------------------------------G---REVAELPLVATCREYQGK 788 (863)
Q Consensus 747 ~Gfy~~vl~~--~~~vV~aA~lri~---------------------------------g---~~~AEip~VAT~~~~Rgq 788 (863)
.-.|.+||++ .|+|||++.|... . ++..||--+-++++||+-
T Consensus 53 ~~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~ 132 (335)
T TIGR03243 53 EEGYLFVLEDTETGTVAGVSAIEAAVGLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKG 132 (335)
T ss_pred CccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCC
Confidence 4579999984 5899999987650 0 356788899999999999
Q ss_pred ChhHHHHH
Q 002950 789 GCFQALFS 796 (863)
Q Consensus 789 G~gr~L~~ 796 (863)
|.|+.|-.
T Consensus 133 ~~G~LLSr 140 (335)
T TIGR03243 133 GNGRLLSR 140 (335)
T ss_pred CchhhHHH
Confidence 99887744
No 177
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=29.87 E-value=97 Score=35.41 Aligned_cols=50 Identities=8% Similarity=-0.049 Sum_probs=39.3
Q ss_pred cccEEEEEEe--CCeEEEEEEEEEe---------------------------------c---CeeEEEeeeeeecccccc
Q 002950 747 GGMYSVILTV--KSVVVSAGLLRIF---------------------------------G---REVAELPLVATCREYQGK 788 (863)
Q Consensus 747 ~Gfy~~vl~~--~~~vV~aA~lri~---------------------------------g---~~~AEip~VAT~~~~Rgq 788 (863)
.--|.+||++ .|+|||++.|... . ++..||--+-++++||+-
T Consensus 54 ~~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~ 133 (336)
T TIGR03245 54 EERYLFVLEDTETGKLLGTSSIVASAGYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKT 133 (336)
T ss_pred CccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCC
Confidence 4578999984 6899999987650 0 356788899999999999
Q ss_pred ChhHHHHH
Q 002950 789 GCFQALFS 796 (863)
Q Consensus 789 G~gr~L~~ 796 (863)
|.|+.|-.
T Consensus 134 ~~G~lLSr 141 (336)
T TIGR03245 134 EAAELLSR 141 (336)
T ss_pred CchhHHHH
Confidence 99887744
No 178
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=29.84 E-value=40 Score=39.34 Aligned_cols=77 Identities=23% Similarity=0.537 Sum_probs=0.0
Q ss_pred CCCcccccccCCCCCCCCCCCCccccc--CCCCCccCcc---cccCCCCCCCccccccccccCCCCccchhhhcccCCCc
Q 002950 526 CPLAFHAACLDPLLIPESGWRCPNCRQ--GHSSSMSRSV---DLKGGLEAPGAEVGGCVICRLSPSENFDIRLCRSHDFS 600 (863)
Q Consensus 526 C~~sfH~~Cl~p~~vp~g~W~C~~C~~--~~~~e~~dpI---r~~r~~k~~~~e~~~C~vC~~~~~e~~~l~l~r~~d~~ 600 (863)
|+++||..|..- ..|.+|.. .+.-...+.| +.+...=++ .|.+| .+.=+-
T Consensus 352 ~GkayHp~CF~C-------v~C~r~ldgipFtvd~~n~v~Cv~dfh~kfAP-----rCs~C-------------~~PI~P 406 (468)
T KOG1701|consen 352 LGKAYHPGCFTC-------VVCARCLDGIPFTVDSQNNVYCVPDFHKKFAP-----RCSVC-------------GNPILP 406 (468)
T ss_pred cccccCCCceEE-------EEeccccCCccccccCCCceeeehhhhhhcCc-----chhhc-------------cCCccC
Q ss_pred cccCCCCceeeccCcccccCccccccCCCCCCcCCCCCCceecCCc
Q 002950 601 AATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDC 646 (863)
Q Consensus 601 ~~~~~~~~Ll~CdqC~rayHv~CL~p~g~~~L~evP~g~WfCc~~C 646 (863)
..+.++..-+.|- +|-||+.|.+ | .+|
T Consensus 407 ~~G~~etvRvvam--dr~fHv~CY~----------------C-EDC 433 (468)
T KOG1701|consen 407 RDGKDETVRVVAM--DRDFHVNCYK----------------C-EDC 433 (468)
T ss_pred CCCCcceEEEEEc--ccccccccee----------------h-hhc
No 179
>PRK10456 arginine succinyltransferase; Provisional
Probab=28.88 E-value=99 Score=35.45 Aligned_cols=50 Identities=14% Similarity=0.091 Sum_probs=38.9
Q ss_pred cccEEEEEEe--CCeEEEEEEEEEe---------------------------------c---CeeEEEeeeeeecccccc
Q 002950 747 GGMYSVILTV--KSVVVSAGLLRIF---------------------------------G---REVAELPLVATCREYQGK 788 (863)
Q Consensus 747 ~Gfy~~vl~~--~~~vV~aA~lri~---------------------------------g---~~~AEip~VAT~~~~Rgq 788 (863)
...|.+||++ .|+|||++.|... . ++..||--+-++++||+-
T Consensus 55 ~~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~ 134 (344)
T PRK10456 55 EQGYVFVLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKE 134 (344)
T ss_pred CccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCC
Confidence 4578899984 5899999887650 0 356788888999999999
Q ss_pred ChhHHHHH
Q 002950 789 GCFQALFS 796 (863)
Q Consensus 789 G~gr~L~~ 796 (863)
|.|+.|-.
T Consensus 135 ~~G~LLSr 142 (344)
T PRK10456 135 GNGYLLSK 142 (344)
T ss_pred CchhHHHH
Confidence 99887744
No 180
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=28.50 E-value=77 Score=34.31 Aligned_cols=44 Identities=9% Similarity=0.212 Sum_probs=40.2
Q ss_pred ChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEcCH
Q 002950 789 GCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMSR 833 (863)
Q Consensus 789 G~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i~~ 833 (863)
|-...|+..|+++|++.|+.+|+.-+..++.+.|. +.||...+.
T Consensus 21 ~~~~~~~~~~~~~a~~~~~~ki~~~~~~~~~~~~~-~~g~~~e~~ 64 (266)
T TIGR03827 21 NDVEALIPDLDALAKKEGYTKIIAKVPGSDKPLFE-ERGYLEEAK 64 (266)
T ss_pred ccHHHHHHHHHHHHHHcCCcEEEEEccHHHHHHHH-HCCCeEEEe
Confidence 33789999999999999999999999999999999 999998843
No 181
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.47 E-value=22 Score=39.05 Aligned_cols=49 Identities=31% Similarity=0.595 Sum_probs=29.6
Q ss_pred cCCccccccccccCC--------C--ceeecCCCCCcccccccCCCCCCCCCCCCcccc
Q 002950 503 TTGGSDDMCHVCGDG--------E--NLLLCNGCPLAFHAACLDPLLIPESGWRCPNCR 551 (863)
Q Consensus 503 ~~~~~dd~C~vCgdg--------G--~Ll~Cd~C~~sfH~~Cl~p~~vp~g~W~C~~C~ 551 (863)
..+-+|..|.+|++. | +-+.=-.|...||..|+.---+--..-.||.|+
T Consensus 219 tkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCK 277 (328)
T KOG1734|consen 219 TKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCK 277 (328)
T ss_pred CCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHH
Confidence 345678999999842 1 122333599999999997632222223455553
No 182
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=27.71 E-value=27 Score=39.71 Aligned_cols=75 Identities=17% Similarity=0.156 Sum_probs=41.7
Q ss_pred chhhHHHHHHHhhccccccccCCCccccccccccCCCceecccEEEEEEeCCe----EEEEEEEEEecCeeEEEeeeeee
Q 002950 707 SLLSSATAIFRECFDPIIAECGRDLIPVMVYGRNISGQEFGGMYSVILTVKSV----VVSAGLLRIFGREVAELPLVATC 782 (863)
Q Consensus 707 ~lLs~Al~I~~EcF~Pi~~~Sg~DlIp~Mvyg~~~~~~~~~Gfy~~vl~~~~~----vV~aA~lri~g~~~AEip~VAT~ 782 (863)
+++.+-+-.+-.+| |-.-|+| +|..+|--+||+..|. +||-=+=--...+---+--|-|.
T Consensus 208 ~~~CrnLCLlsKlF----------Ld~KtLY------yDVDpflFYvl~~~~~~~~h~vGyFSKEK~S~~~yNLaCILtL 271 (395)
T COG5027 208 RLYCRNLCLLSKLF----------LDHKTLY------YDVDPFLFYVLTERGDTGCHLVGYFSKEKESEQDYNLACILTL 271 (395)
T ss_pred hhHHHHHHHHHHHH----------hcCceeE------EeccceEEEEEEEcCCcceeeeeeechhhcccccCceEEEEec
Confidence 45677777777888 2222332 3445533333343322 33321111111222346678899
Q ss_pred ccccccChhHHHHHH
Q 002950 783 REYQGKGCFQALFSC 797 (863)
Q Consensus 783 ~~~RgqG~gr~L~~~ 797 (863)
|.||++|||+.|++.
T Consensus 272 P~yQRrGYG~lLIdF 286 (395)
T COG5027 272 PPYQRRGYGKLLIDF 286 (395)
T ss_pred ChhHhcccceEeeee
Confidence 999999999999864
No 183
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=26.87 E-value=3.3e+02 Score=29.90 Aligned_cols=69 Identities=20% Similarity=0.180 Sum_probs=44.7
Q ss_pred cccEEEEEEe-CCeEEEEEEEEEec-CeeEEEeeeeeeccccccChhHHHHHHHHHHHhhCCccEEEecchh
Q 002950 747 GGMYSVILTV-KSVVVSAGLLRIFG-REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAE 816 (863)
Q Consensus 747 ~Gfy~~vl~~-~~~vV~aA~lri~g-~~~AEip~VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~ 816 (863)
.++..+|++. +|+++|.+.+-..+ .+.+-+-+.=.+++ -=+|+-..|+..+-+.|++-|++.|-|..++
T Consensus 178 ~~~~~~~~~~~dgki~af~~~~~~~~~~~~~~~~~k~~~~-a~~G~~e~l~~~~~~~~~~~g~~~lnLg~ap 248 (299)
T PF09924_consen 178 LGLRGFVARVADGKIVAFAIGSPLGGRDGWSIDFEKADPD-APKGIYEFLNVEFAEHLKAEGVEYLNLGFAP 248 (299)
T ss_dssp HT-EEEEEEE-TTEEEEEEEEEEEE-TTEEEEEEEEE-TT--STTHHHHHHHHHHHHS--TT--EEE-----
T ss_pred cCceEEEEEECCCcEEEEEEEEEccCCccEEEEEEecCCC-CCCcHHHHHHHHHHHhhhhCCceEEEccccc
Confidence 3566666788 99999999888777 56555555444555 3468899999999999999999999977664
No 184
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=25.43 E-value=44 Score=36.91 Aligned_cols=27 Identities=30% Similarity=0.687 Sum_probs=13.4
Q ss_pred CccccccccccCC------------C-ceeecCCCCCccc
Q 002950 505 GGSDDMCHVCGDG------------E-NLLLCNGCPLAFH 531 (863)
Q Consensus 505 ~~~dd~C~vCgdg------------G-~Ll~Cd~C~~sfH 531 (863)
......|.+||.. | ..+.|..|...+|
T Consensus 169 ~w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~ 208 (290)
T PF04216_consen 169 GWQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWR 208 (290)
T ss_dssp -TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE
T ss_pred CccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeee
Confidence 4455799999831 2 6777887776555
No 185
>PF13066 DUF3929: Protein of unknown function (DUF3929)
Probab=24.60 E-value=69 Score=27.10 Aligned_cols=30 Identities=33% Similarity=0.336 Sum_probs=24.4
Q ss_pred cccCCCcHHHHHHHHhcCchhHHHHHHHHh
Q 002950 283 YLENGKPIYSIIQELKTAPLGILEEVVKKV 312 (863)
Q Consensus 283 ~lenG~sL~~v~~~~k~~~l~~l~~~i~~~ 312 (863)
+||||+++.||-.-|-.+--.+|+.+--.+
T Consensus 4 ~leng~~ikdikefcyrd~~k~lervahrv 33 (65)
T PF13066_consen 4 HLENGETIKDIKEFCYRDQGKMLERVAHRV 33 (65)
T ss_pred EccCCcChHHHHHHHhhhhhHHHHHHHHHh
Confidence 799999999998888888888887655433
No 186
>PF10187 Nefa_Nip30_N: N-terminal domain of NEFA-interacting nuclear protein NIP30; InterPro: IPR019331 This is a the N-terminal 100 amino acids of a family of proteins conserved from plants to humans. The full-length protein has putatively been called NEFA-interacting nuclear protein NIP30, however no reference could be found to confirm this.
Probab=24.16 E-value=61 Score=30.78 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=22.7
Q ss_pred cCCCcHHHHHHHHhcCchhHHHHHHH
Q 002950 285 ENGKPIYSIIQELKTAPLGILEEVVK 310 (863)
Q Consensus 285 enG~sL~~v~~~~k~~~l~~l~~~i~ 310 (863)
.+|||||++|++=|.+....++++++
T Consensus 35 ~d~rsLye~LqenK~~Kq~efeE~~K 60 (102)
T PF10187_consen 35 YDGRSLYERLQENKAAKQEEFEEKHK 60 (102)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 37999999999999888888888776
No 187
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=23.92 E-value=56 Score=34.43 Aligned_cols=23 Identities=35% Similarity=0.881 Sum_probs=20.3
Q ss_pred cCCCCceeeccCcccccCccccc
Q 002950 603 TFDDRTVIYCDQCEKEFHVGCLR 625 (863)
Q Consensus 603 ~~~~~~Ll~CdqC~rayHv~CL~ 625 (863)
.|+......|..|...||..|..
T Consensus 166 PF~~~~~~~C~~C~~v~H~~C~~ 188 (202)
T PF13901_consen 166 PFQIDTTVRCPKCKSVFHKSCFR 188 (202)
T ss_pred CCCCCCeeeCCcCccccchhhcC
Confidence 45667899999999999999996
No 188
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=23.51 E-value=40 Score=29.61 Aligned_cols=29 Identities=28% Similarity=0.663 Sum_probs=12.1
Q ss_pred cccccccC----CC--ceeecC--CCCCcccccccCC
Q 002950 509 DMCHVCGD----GE--NLLLCN--GCPLAFHAACLDP 537 (863)
Q Consensus 509 d~C~vCgd----gG--~Ll~Cd--~C~~sfH~~Cl~p 537 (863)
..|.||-. .+ ..+.|+ .|...||..||.-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHH
Confidence 46888852 23 458898 7999999999964
No 189
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=23.42 E-value=68 Score=31.43 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=35.7
Q ss_pred eeeeccccccChhHHHHHHHHHHHhhCCcc--EEEecch-hhHHHHHHhccCcEEcCHHHHHhhhccceeeeecC
Q 002950 779 VATCREYQGKGCFQALFSCIERLLCSLNVE--NLVLPAA-EKAESIWTKKFGFRKMSRERLLKYQRDFQLTIFKG 850 (863)
Q Consensus 779 VAT~~~~RgqG~gr~L~~~iE~~l~~lgV~--~LvL~A~-~~A~~~w~~kfGF~~i~~~~~~~~~~~~~l~~f~g 850 (863)
+.|....|++|+|++|++.+.+. -+++ .+..+-- +-...|-.+.+|-+..- ...-++++|+|
T Consensus 52 FyVhes~QR~G~Gk~LF~~ML~~---e~~~p~~~a~DrPS~Kll~Fl~Khy~L~~~i-------pQ~NNFVVf~~ 116 (120)
T PF05301_consen 52 FYVHESRQRRGYGKRLFDHMLQE---ENVSPHQLAIDRPSPKLLSFLKKHYGLQRYI-------PQSNNFVVFEG 116 (120)
T ss_pred EEEEeceeccCchHHHHHHHHHH---cCCCcccceecCCcHHHHHHHHHhcCCCcCC-------CCCccEEEehH
Confidence 35789999999999999887654 2332 2221111 34456666556544332 12245667765
No 190
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=22.57 E-value=25 Score=30.99 Aligned_cols=26 Identities=31% Similarity=0.741 Sum_probs=16.8
Q ss_pred CCCCCcccccccCCCCCCCCCCCCcccc
Q 002950 524 NGCPLAFHAACLDPLLIPESGWRCPNCR 551 (863)
Q Consensus 524 d~C~~sfH~~Cl~p~~vp~g~W~C~~C~ 551 (863)
..|+..||..|+..- -.....||.|+
T Consensus 48 ~~C~H~FH~~Ci~~W--l~~~~~CP~CR 73 (73)
T PF12678_consen 48 GPCGHIFHFHCISQW--LKQNNTCPLCR 73 (73)
T ss_dssp ETTSEEEEHHHHHHH--HTTSSB-TTSS
T ss_pred cccCCCEEHHHHHHH--HhcCCcCCCCC
Confidence 459999999999641 12233788774
No 191
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=21.36 E-value=67 Score=41.27 Aligned_cols=37 Identities=32% Similarity=0.957 Sum_probs=32.0
Q ss_pred CceeeccCcccccCccccccCCCCCCcCCCCCCceecCCchhh
Q 002950 607 RTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRI 649 (863)
Q Consensus 607 ~~Ll~CdqC~rayHv~CL~p~g~~~L~evP~g~WfCc~~C~~i 649 (863)
..+ .|+.|.+.||..|..+ ++..++++.|.| ..|...
T Consensus 168 ~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~ 204 (904)
T KOG1246|consen 168 KLL-LCDSCDDSYHTYCLRP----PLTRVPDGDWRC-PKCIPT 204 (904)
T ss_pred cce-ecccccCcccccccCC----CCCcCCcCcccC-Cccccc
Confidence 345 9999999999999987 889999999997 677665
No 192
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.75 E-value=45 Score=38.15 Aligned_cols=35 Identities=29% Similarity=0.655 Sum_probs=22.5
Q ss_pred CCceeeccCcccccCccccccCCCCCCcCCCCCCceecCCchh
Q 002950 606 DRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 648 (863)
Q Consensus 606 ~~~Ll~CdqC~rayHv~CL~p~g~~~L~evP~g~WfCc~~C~~ 648 (863)
.|..+.=--|...||..|.++ =|. ...=|| +.|+.
T Consensus 241 ~GdklRiLPC~H~FH~~CIDp----WL~---~~r~~C-PvCK~ 275 (348)
T KOG4628|consen 241 KGDKLRILPCSHKFHVNCIDP----WLT---QTRTFC-PVCKR 275 (348)
T ss_pred cCCeeeEecCCCchhhccchh----hHh---hcCccC-CCCCC
Confidence 344444478999999999986 111 112368 78875
No 193
>PF07943 PBP5_C: Penicillin-binding protein 5, C-terminal domain; InterPro: IPR012907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry contains proteins that are annotated as penicillin-binding protein 5 and 6. These belong to MEROPS peptidase family S11 (D-Ala-D-Ala carboxypeptidase A family, clan SE). Penicillin-binding protein 5 expressed by Escherichia coli functions as a D-alanyl-D-alanine carboxypeptidase. It is composed of two domains that are oriented at approximately right angles to each other. The N-terminal domain (IPR001967 from INTERPRO) is the catalytic domain. The C-terminal domain, this entry, is organised into a sandwich of two anti-parallel beta-sheets, and has a relatively hydrophobic surface as compared to the N-terminal domain. Its precise function is unknown; it may mediate interactions with other cell wall-synthesising enzymes, thus allowing the protein to be recruited to areas of active cell wall synthesis. It may also function as a linker domain that positions the active site in the catalytic domain closer to the peptidoglycan layer, to allow it to interact with cell wall peptides []. ; GO: 0009002 serine-type D-Ala-D-Ala carboxypeptidase activity, 0006508 proteolysis; PDB: 3A3J_A 3MFD_B 1XP4_D 3MZD_A 1NZU_A 1NJ4_A 1Z6F_A 3MZF_A 1NZO_A 3MZE_A ....
Probab=20.43 E-value=1.2e+02 Score=27.04 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=23.4
Q ss_pred CCeEEEEEEEEEecCeeEEEeeeeeec
Q 002950 757 KSVVVSAGLLRIFGREVAELPLVATCR 783 (863)
Q Consensus 757 ~~~vV~aA~lri~g~~~AEip~VAT~~ 783 (863)
-|+.||.+.+..-|..++++|++|...
T Consensus 62 kG~~vG~~~v~~~~~~i~~vpL~a~~~ 88 (91)
T PF07943_consen 62 KGQVVGTLTVYLDGKLIGEVPLVASED 88 (91)
T ss_dssp TTSEEEEEEEEETTEEEEEEEEEESS-
T ss_pred CCCEEEEEEEEECCEEEEEEEEEECCc
Confidence 399999999988888999999999753
Done!