BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002959
(862 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1
pdb|2EK9|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 With
Bestatin
Length = 421
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 182 ILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAH 241
I++ SH D+V GA D +S VAV LELARVMS+ + + + F+ EE GL G+
Sbjct: 223 IIIGSHHDSVEKAPGANDDASGVAVTLELARVMSKLKTDTE--LRFITFGAEENGLIGSK 280
Query: 242 SF 243
+
Sbjct: 281 KY 282
>pdb|3B3T|A Chain A, Crystal Structure Of The D118n Mutant Of The
Aminopeptidase From Vibrio Proteolyticus
Length = 291
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 175 SEAGENAILVSSHIDTV--------SAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVI 226
SEA + I++ H+D+ S GA D +S +A + E+ RV+S+ + K ++
Sbjct: 85 SEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDNASGIAAVTEVIRVLSENNFQPKRSIA 144
Query: 227 FLFNTGEEEGLNGAHSFVTQH 247
F+ EE GL G+ Q+
Sbjct: 145 FMAYAAEEVGLRGSQDLANQY 165
>pdb|1RTQ|A Chain A, The 0.95 Angstrom Resolution Crystal Structure Of The
Aminopeptidase From Aeromonas Proteolytica
pdb|1TXR|A Chain A, X-Ray Crystal Structure Of Bestatin Bound To Aap
pdb|1XRY|A Chain A, Crystal Structure Of Aeromonas Proteolytica Aminopeptidase
In Complex With Bestatin
pdb|2DEA|A Chain A, Crystal Structure Of The Aminopeptidase Of Aeromonas
Proteolytica At Ph 4.7
pdb|2NYQ|A Chain A, Structure Of Vibrio Proteolyticus Aminopeptidase With A
Bound Trp Fragment Of Dlwcf
pdb|3FH4|A Chain A, Crystal Structure Of Recombinant Vibrio Proteolyticus
Aminopeptidase
pdb|3VH9|A Chain A, Crystal Structure Of Aeromonas Proteolytica Aminopeptidase
Complexed With 8-Quinolinol
Length = 299
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 175 SEAGENAILVSSHIDTV--------SAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVI 226
SEA + I++ H+D+ S GA D +S +A + E+ RV+S+ + K ++
Sbjct: 85 SEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEVIRVLSENNFQPKRSIA 144
Query: 227 FLFNTGEEEGLNGAHSFVTQH 247
F+ EE GL G+ Q+
Sbjct: 145 FMAYAAEEVGLRGSQDLANQY 165
>pdb|3B3V|A Chain A, Crystal Structure Of The S228a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus
pdb|3B3W|A Chain A, Crystal Structure Of The S228a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus In Complex With
Leucine
pdb|3B7I|A Chain A, Crystal Structure Of The S228a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus In Complex With
Leucine Phosphonic Acid
Length = 291
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 175 SEAGENAILVSSHIDTV--------SAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVI 226
SEA + I++ H+D+ S GA D +S +A + E+ RV+S+ + K ++
Sbjct: 85 SEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEVIRVLSENNFQPKRSIA 144
Query: 227 FLFNTGEEEGLNGAHSFVTQH 247
F+ EE GL G+ Q+
Sbjct: 145 FMAYAAEEVGLRGSQDLANQY 165
>pdb|1CP6|A Chain A, 1-Butaneboronic Acid Binding To Aeromonas Proteolytica
Aminopeptidase
pdb|1FT7|A Chain A, Aap Complexed With L-Leucinephosphonic Acid
pdb|1LOK|A Chain A, The 1.20 Angstrom Resolution Crystal Structure Of The
Aminopeptidase From Aeromonas Proteolytica Complexed
With Tris: A Tale Of Buffer Inhibition
pdb|2PRQ|A Chain A, X-Ray Crystallographic Characterization Of The Co(Ii)-
Substituted Tris-Bound Form Of The Aminopeptidase From
Aeromonas Proteolytica
pdb|1AMP|A Chain A, Crystal Structure Of Aeromonas Proteolytica
Aminopeptidase: A Prototypical Member Of The
Co-Catalytic Zinc Enzyme Family
pdb|2IQ6|A Chain A, Crystal Structure Of The Aminopeptidase From Vibrio
Proteolyticus In Complexation With Leucyl-Leucyl-Leucine
Length = 291
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 175 SEAGENAILVSSHIDTV--------SAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVI 226
SEA + I++ H+D+ S GA D +S +A + E+ RV+S+ + K ++
Sbjct: 85 SEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEVIRVLSENNFQPKRSIA 144
Query: 227 FLFNTGEEEGLNGAHSFVTQH 247
F+ EE GL G+ Q+
Sbjct: 145 FMAYAAEEVGLRGSQDLANQY 165
>pdb|1IGB|A Chain A, Aeromonas Proteolytica Aminopeptidase Complexed With The
Inhibitor Para-Iodo-D-Phenylalanine Hydroxamate
Length = 291
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 175 SEAGENAILVSSHIDTV--------SAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVI 226
SEA + I++ H+D+ S GA D +S +A + E+ RV+S+ + K ++
Sbjct: 85 SEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEVIRVLSENNFQPKRSIA 144
Query: 227 FLFNTGEEEGLNGAHSFVTQH 247
F+ EE GL G+ Q+
Sbjct: 145 FMAYAAEEVGLRGSQDLANQY 165
>pdb|3B35|A Chain A, Crystal Structure Of The M180a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus
pdb|3B3C|A Chain A, Crystal Structure Of The M180a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus In Complex With
Leucine Phosphonic Acid
pdb|3B3S|A Chain A, Crystal Structure Of The M180a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus In Complex With
Leucine
Length = 291
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 175 SEAGENAILVSSHIDTV--------SAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVI 226
SEA + I++ H+D+ S GA D +S +A + E+ RV+S+ + K ++
Sbjct: 85 SEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEVIRVLSENNFQPKRSIA 144
Query: 227 FLFNTGEEEGLNGAHSFVTQH 247
F+ EE GL G+ Q+
Sbjct: 145 FMAYAAEEVGLRGSQDLANQY 165
>pdb|2ANP|A Chain A, Functional Glutamate 151 To Histidine Mutant Of The
Aminopeptidase From Aeromonas Proteolytica
Length = 291
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 175 SEAGENAILVSSHIDTV--------SAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVI 226
SEA + I++ H+D+ S GA D +S +A + E+ RV+S+ + K ++
Sbjct: 85 SEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEVIRVLSENNFQPKRSIA 144
Query: 227 FLFNTGEEEGLNGAHSFVTQH 247
F+ E GL G+ Q+
Sbjct: 145 FMAYAAHEVGLRGSQDLANQY 165
>pdb|1XJO|A Chain A, Structure Of Aminopeptidase
Length = 284
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 182 ILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAH 241
++ +H+D+VS+G G D S A +LE A +S+ ++ + F + EE GL G+
Sbjct: 80 LMAGAHLDSVSSGAGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGLIGSK 139
Query: 242 SFVTQHPWSTTIRVAVDLEAMGIG 265
+V P + ++A L IG
Sbjct: 140 FYVNNLPSADRSKLAGYLNFDXIG 163
>pdb|1CP7|A Chain A, Aminopeptidase From Streptomyces Griseus
pdb|1QQ9|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With
Methionine
pdb|1F2O|A Chain A, Crystal Structure Of The Streptomyces Griseus
Aminopeptidase Complexed With L-Leucine
pdb|1F2P|A Chain A, Crystal Structure Of The Streptomyces Griseus
Aminopeptidase Complexed With L-Phenylalanine
pdb|1TF8|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With L-
Tryptophan
pdb|1TF9|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With
P-Iodo-L- Phenylalanine
pdb|1TKF|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With D-
Tryptophan
pdb|1TKH|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With D-
Phenylalanine
pdb|1TKJ|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With D-
Methionine
pdb|1XBU|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With
P-Iodo-D- Phenylalanine
Length = 284
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 182 ILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAH 241
++ +H+D+VS+G G D S A +LE A +S+ ++ + F + EE GL G+
Sbjct: 80 LMAGAHLDSVSSGAGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGLIGSK 139
Query: 242 SFVTQHPWSTTIRVA 256
+V P + ++A
Sbjct: 140 FYVNNLPSADRSKLA 154
>pdb|3IIB|A Chain A, Crystal Structure Of Peptidase M28 Precursor (Yp_926796.1)
From Shewanella Amazonensis Sb2b At 1.70 A Resolution
Length = 444
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 25/186 (13%)
Query: 175 SEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEE 234
S + +L+ +H+D+ G GA D + VA++ A+ + + + + + EE
Sbjct: 245 STKADEIVLIGAHLDSWDEGTGAIDDGAGVAIVTAAAKHILDLPQKPERTIRVVLYAAEE 304
Query: 235 EGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGGRSALFQAGPNL---WAVENFA------- 284
GL G ++ +H +LE I S F AGP W V + A
Sbjct: 305 LGLLGGKTYAKEH--------EAELEKHYIAAESD-FGAGPIYQIDWRVADTAHSPVINA 355
Query: 285 -AVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDL 343
VA+ P G G + ASG + + + VA L Y D +HT ND LD
Sbjct: 356 XKVAE-PLGVAAGNNK-ASGGPDVSXLPALGVPVASLRQDGSDYFD---YHHTPNDTLDK 410
Query: 344 LKPGSL 349
+ P +L
Sbjct: 411 INPEAL 416
>pdb|1CG2|A Chain A, Carboxypeptidase G2
pdb|1CG2|B Chain B, Carboxypeptidase G2
pdb|1CG2|C Chain C, Carboxypeptidase G2
pdb|1CG2|D Chain D, Carboxypeptidase G2
Length = 393
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 18/96 (18%)
Query: 169 ILPKYASEAGENAILVSSHIDTV-----------------SAGEGAGDCSSCVAVMLELA 211
I+ K G+N +L+ SH+DTV + G G D AV+L
Sbjct: 73 IVGKIKGRGGKN-LLLMSHMDTVYLKGILAKAPFRVEGDKAYGPGIADDKGGNAVILHTL 131
Query: 212 RVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQH 247
+++ ++ + LFNT EE+G G+ + +
Sbjct: 132 KLLKEYGVRDYGTITVLFNTDEEKGSFGSRDLIQEE 167
>pdb|3RIM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
Length = 700
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 7/132 (5%)
Query: 657 SATPG----KLTKEVEQIKEGFVCGRDNVIDFVTSSMKYGCLTDDNSEGGWSQSDIPTIH 712
S TPG + T VE G + + +S L D ++E G S D
Sbjct: 114 SKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYV 173
Query: 713 VNSDTVDTEGNENERITQVSIDMKGAKRLTLAINAKEIEDFTFKVDSEELVPRDAKSSIY 772
+ SD EG +E + ++ G + N IED T E+ A+ Y
Sbjct: 174 IASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQISIEDDTNIALCEDTA---ARYRAY 230
Query: 773 GWHIIEFSGGKN 784
GWH+ E GG+N
Sbjct: 231 GWHVQEVEGGEN 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,736,998
Number of Sequences: 62578
Number of extensions: 1016802
Number of successful extensions: 2204
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2189
Number of HSP's gapped (non-prelim): 19
length of query: 862
length of database: 14,973,337
effective HSP length: 107
effective length of query: 755
effective length of database: 8,277,491
effective search space: 6249505705
effective search space used: 6249505705
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)