Query 002959
Match_columns 862
No_of_seqs 414 out of 2143
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 14:13:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2194 Aminopeptidases of the 100.0 4E-126 8E-131 1107.9 56.7 755 34-854 4-834 (834)
2 PF04389 Peptidase_M28: Peptid 100.0 1E-28 2.2E-33 249.2 10.4 170 180-350 1-179 (179)
3 PRK10199 alkaline phosphatase 100.0 1.8E-26 3.9E-31 253.9 28.8 261 86-367 30-345 (346)
4 KOG2195 Transferrin receptor a 99.9 1.8E-22 4E-27 238.8 16.8 205 158-372 334-552 (702)
5 KOG3946 Glutaminyl cyclase [Po 99.7 1.9E-16 4.2E-21 165.7 19.7 249 82-362 46-334 (338)
6 COG2234 Iap Predicted aminopep 99.7 9.8E-17 2.1E-21 183.9 13.1 188 161-359 183-389 (435)
7 TIGR03176 AllC allantoate amid 99.5 2.8E-13 6E-18 154.7 15.0 127 87-247 3-141 (406)
8 PRK08262 hypothetical protein; 99.5 4.8E-13 1E-17 156.0 16.7 170 43-246 2-201 (486)
9 PRK09133 hypothetical protein; 99.5 1.4E-12 3.1E-17 151.4 18.5 151 82-261 32-203 (472)
10 PRK12890 allantoate amidohydro 99.4 2.5E-12 5.5E-17 146.8 16.5 129 84-246 6-145 (414)
11 PRK12891 allantoate amidohydro 99.4 4.1E-12 8.8E-17 145.3 16.1 128 83-244 6-145 (414)
12 TIGR01879 hydantase amidase, h 99.4 4.5E-12 9.9E-17 144.3 15.7 126 88-247 2-139 (401)
13 PRK09290 allantoate amidohydro 99.4 6.3E-12 1.4E-16 143.6 16.6 130 84-247 4-145 (413)
14 PRK06133 glutamate carboxypept 99.4 1.3E-11 2.9E-16 140.9 19.0 146 85-263 35-198 (410)
15 PRK13590 putative bifunctional 99.4 5.1E-12 1.1E-16 150.8 15.2 128 85-245 179-321 (591)
16 PRK08596 acetylornithine deace 99.4 1.3E-11 2.9E-16 141.4 17.8 145 87-263 13-179 (421)
17 PRK13799 unknown domain/N-carb 99.4 5.6E-12 1.2E-16 150.3 14.5 128 84-245 178-321 (591)
18 PRK07473 carboxypeptidase; Pro 99.3 2.9E-11 6.2E-16 136.8 18.8 150 83-263 7-174 (376)
19 PRK12892 allantoate amidohydro 99.3 1.7E-11 3.7E-16 139.7 16.4 130 83-247 6-146 (412)
20 PRK12893 allantoate amidohydro 99.3 1.6E-11 3.5E-16 140.0 16.0 131 83-247 6-148 (412)
21 TIGR01910 DapE-ArgE acetylorni 99.3 2.4E-11 5.2E-16 136.8 15.8 146 91-263 2-168 (375)
22 PRK08588 succinyl-diaminopimel 99.3 3.1E-11 6.7E-16 135.9 16.2 139 87-261 2-161 (377)
23 PRK07906 hypothetical protein; 99.3 2.6E-11 5.7E-16 139.0 14.8 130 90-248 2-155 (426)
24 PRK07338 hypothetical protein; 99.3 6.4E-11 1.4E-15 134.6 17.1 157 86-262 16-190 (402)
25 PRK07907 hypothetical protein; 99.3 7E-11 1.5E-15 136.5 17.2 145 85-263 16-185 (449)
26 PRK09104 hypothetical protein; 99.3 1E-10 2.2E-15 135.7 18.5 146 85-261 15-190 (464)
27 PRK06446 hypothetical protein; 99.3 6.4E-11 1.4E-15 136.4 16.0 138 87-258 2-161 (436)
28 PRK13983 diaminopimelate amino 99.3 1.2E-10 2.6E-15 131.7 17.9 150 87-260 5-180 (400)
29 TIGR01880 Ac-peptdase-euk N-ac 99.3 8.4E-11 1.8E-15 133.6 16.6 147 83-260 5-173 (400)
30 PRK13013 succinyl-diaminopimel 99.2 1.4E-10 3.1E-15 132.7 17.8 153 86-262 13-188 (427)
31 PRK08201 hypothetical protein; 99.2 1.1E-10 2.3E-15 135.2 16.4 148 85-262 12-183 (456)
32 COG1363 FrvX Cellulase M and r 99.2 1.1E-09 2.4E-14 121.9 22.9 226 87-365 2-348 (355)
33 PF05450 Nicastrin: Nicastrin; 99.2 2.4E-10 5.2E-15 121.1 16.2 167 180-346 1-200 (234)
34 PF09940 DUF2172: Domain of un 99.2 5.5E-10 1.2E-14 123.1 18.6 239 83-366 56-308 (386)
35 TIGR01893 aa-his-dipept aminoa 99.2 1.7E-10 3.7E-15 134.4 15.4 137 86-263 3-166 (477)
36 PRK05469 peptidase T; Provisio 99.2 2.5E-10 5.4E-15 130.2 16.4 127 87-245 2-185 (408)
37 PRK04443 acetyl-lysine deacety 99.2 2.2E-10 4.7E-15 128.0 15.3 134 85-263 4-149 (348)
38 KOG2275 Aminoacylase ACY1 and 99.2 2.2E-10 4.7E-15 127.2 14.8 145 89-263 27-193 (420)
39 PRK07079 hypothetical protein; 99.2 3E-10 6.5E-15 132.1 16.1 149 84-261 14-190 (469)
40 TIGR01883 PepT-like peptidase 99.2 3.2E-10 6.9E-15 126.9 15.2 128 88-246 1-146 (361)
41 PRK13381 peptidase T; Provisio 99.2 4.2E-10 9.2E-15 128.2 16.1 137 89-261 3-196 (404)
42 PRK06915 acetylornithine deace 99.2 5.5E-10 1.2E-14 127.9 17.1 156 86-260 16-192 (422)
43 PRK07318 dipeptidase PepV; Rev 99.2 3.7E-10 8.1E-15 131.2 15.6 127 86-248 13-167 (466)
44 PRK06837 acetylornithine deace 99.2 5.2E-10 1.1E-14 128.5 16.3 158 86-261 19-197 (427)
45 PRK07522 acetylornithine deace 99.1 4.5E-10 9.8E-15 126.7 15.4 141 87-261 4-165 (385)
46 PRK13007 succinyl-diaminopimel 99.1 7.1E-10 1.5E-14 123.6 16.2 134 86-262 6-156 (352)
47 TIGR01892 AcOrn-deacetyl acety 99.1 5.7E-10 1.2E-14 124.7 15.2 136 92-262 2-157 (364)
48 PRK07205 hypothetical protein; 99.1 7.5E-10 1.6E-14 127.9 16.1 127 85-247 9-164 (444)
49 PRK15026 aminoacyl-histidine d 99.1 1.6E-09 3.4E-14 126.7 18.3 138 84-262 7-171 (485)
50 PRK06156 hypothetical protein; 99.1 1.5E-09 3.3E-14 127.9 18.4 138 85-261 44-213 (520)
51 PRK00466 acetyl-lysine deacety 99.1 8.6E-10 1.9E-14 123.1 15.5 129 86-263 9-149 (346)
52 PRK08652 acetylornithine deace 99.1 8.8E-10 1.9E-14 122.3 14.8 130 87-261 2-143 (347)
53 TIGR01882 peptidase-T peptidas 99.1 1.2E-09 2.6E-14 124.9 16.1 128 87-245 3-187 (410)
54 COG4882 Predicted aminopeptida 99.1 1.2E-09 2.6E-14 118.4 14.6 171 162-366 178-360 (486)
55 PF01546 Peptidase_M20: Peptid 99.1 7.1E-10 1.5E-14 111.9 11.9 164 183-360 1-187 (189)
56 TIGR03106 trio_M42_hydro hydro 99.1 1E-08 2.2E-13 114.9 22.0 147 197-360 181-339 (343)
57 PRK08651 succinyl-diaminopimel 99.1 1.8E-09 3.8E-14 122.4 16.3 149 85-263 4-173 (394)
58 PRK05111 acetylornithine deace 99.1 2.2E-09 4.7E-14 121.2 16.9 140 86-260 4-168 (383)
59 PRK13009 succinyl-diaminopimel 99.1 1.4E-09 3.1E-14 122.2 14.5 137 88-260 3-162 (375)
60 COG0624 ArgE Acetylornithine d 99.1 2E-09 4.3E-14 122.8 15.8 145 87-261 13-180 (409)
61 TIGR01886 dipeptidase dipeptid 99.0 1.8E-09 4E-14 125.6 14.8 126 87-248 13-166 (466)
62 PRK08554 peptidase; Reviewed 99.0 2.9E-09 6.2E-14 123.1 16.1 141 88-263 2-166 (438)
63 PRK13004 peptidase; Reviewed 99.0 6E-09 1.3E-13 118.6 16.0 137 86-262 14-172 (399)
64 TIGR01246 dapE_proteo succinyl 99.0 5.1E-09 1.1E-13 117.7 14.8 136 90-261 2-160 (370)
65 TIGR03107 glu_aminopep glutamy 99.0 3.4E-08 7.4E-13 110.8 20.9 149 197-363 176-341 (350)
66 PRK09961 exoaminopeptidase; Pr 99.0 3.7E-08 8E-13 110.5 21.1 219 91-363 4-333 (344)
67 TIGR01902 dapE-lys-deAc N-acet 98.9 7.4E-09 1.6E-13 115.1 14.0 125 92-263 2-138 (336)
68 TIGR01900 dapE-gram_pos succin 98.9 1E-08 2.2E-13 116.0 15.2 135 93-263 2-171 (373)
69 TIGR01887 dipeptidaselike dipe 98.9 9.2E-09 2E-13 119.2 14.8 124 87-246 2-153 (447)
70 KOG2526 Predicted aminopeptida 98.9 1.7E-08 3.6E-13 111.8 15.0 193 161-358 192-412 (555)
71 PRK09864 putative peptidase; P 98.9 1E-07 2.2E-12 107.0 20.6 149 197-363 173-341 (356)
72 TIGR01891 amidohydrolases amid 98.9 2.7E-08 5.8E-13 111.8 15.7 132 91-262 3-151 (363)
73 TIGR03320 ygeY M20/DapE family 98.8 4.8E-08 1E-12 111.1 15.2 135 87-261 13-169 (395)
74 TIGR03526 selenium_YgeY putati 98.8 6.1E-08 1.3E-12 110.3 15.9 134 87-260 13-168 (395)
75 PRK08737 acetylornithine deace 98.8 4.1E-08 8.9E-13 110.8 14.0 131 86-262 5-156 (364)
76 COG4187 RocB Arginine degradat 98.7 1.3E-07 2.7E-12 105.5 12.3 158 83-264 4-209 (553)
77 COG4310 Uncharacterized protei 98.6 2.8E-07 6E-12 98.8 12.2 171 178-366 177-356 (435)
78 PLN02693 IAA-amino acid hydrol 98.6 8.2E-07 1.8E-11 102.8 16.1 120 89-246 49-182 (437)
79 PLN02280 IAA-amino acid hydrol 98.6 1.3E-06 2.7E-11 102.3 16.8 133 90-258 96-243 (478)
80 PF05343 Peptidase_M42: M42 gl 98.2 6E-06 1.3E-10 90.7 9.8 133 197-342 132-282 (292)
81 KOG2276 Metalloexopeptidases [ 98.1 2.5E-05 5.5E-10 87.0 13.4 142 85-247 14-180 (473)
82 KOG2657 Transmembrane glycopro 97.7 0.00027 5.9E-09 80.8 12.3 187 161-349 156-374 (596)
83 COG2195 PepD Di- and tripeptid 96.5 0.0057 1.2E-07 70.3 7.8 149 84-260 2-203 (414)
84 PF04114 Gaa1: Gaa1-like, GPI 96.4 0.17 3.7E-06 60.0 19.6 184 161-366 2-228 (504)
85 COG1473 AbgB Metal-dependent a 95.9 0.17 3.7E-06 58.1 15.3 125 102-261 24-164 (392)
86 PRK02256 putative aminopeptida 92.0 1.5 3.2E-05 51.6 12.5 155 182-347 245-449 (462)
87 PRK02813 putative aminopeptida 91.9 0.63 1.4E-05 54.2 9.2 144 195-347 230-415 (428)
88 PTZ00371 aspartyl aminopeptida 90.1 2.6 5.6E-05 49.7 12.1 151 195-349 247-444 (465)
89 KOG3566 Glycosylphosphatidylin 59.6 32 0.00069 41.4 8.2 94 161-265 119-229 (617)
90 PRK08126 hypothetical protein; 57.3 3E+02 0.0064 32.5 15.7 52 181-233 355-408 (432)
91 PF09586 YfhO: Bacterial membr 43.0 5.1E+02 0.011 32.8 16.0 11 737-747 581-591 (843)
92 PF07466 DUF1517: Protein of u 41.8 5.4E+02 0.012 28.7 17.9 47 204-250 240-286 (289)
93 PF09971 DUF2206: Predicted me 40.6 3.5E+02 0.0076 31.2 12.6 42 577-618 123-167 (367)
94 PRK07033 hypothetical protein; 38.4 7.3E+02 0.016 29.3 16.5 54 180-234 345-400 (427)
95 PRK08651 succinyl-diaminopimel 35.9 70 0.0015 36.3 6.2 56 306-366 338-393 (394)
96 PF05297 Herpes_LMP1: Herpesvi 32.2 15 0.00033 40.3 0.0 15 474-488 59-73 (381)
97 PF05421 DUF751: Protein of un 32.0 1.6E+02 0.0035 25.3 6.1 30 575-604 12-41 (61)
98 PF05297 Herpes_LMP1: Herpesvi 31.3 16 0.00035 40.1 0.0 11 436-446 89-99 (381)
99 PRK08596 acetylornithine deace 29.2 1E+02 0.0022 35.7 6.1 56 306-366 363-418 (421)
100 PF12911 OppC_N: N-terminal TM 28.7 67 0.0015 26.1 3.3 36 590-625 8-43 (56)
101 PF06781 UPF0233: Uncharacteri 28.5 84 0.0018 28.8 4.1 10 59-68 46-55 (87)
102 PF05656 DUF805: Protein of un 27.8 3.9E+02 0.0085 24.9 8.9 38 511-551 65-106 (120)
103 PRK07522 acetylornithine deace 27.8 1.3E+02 0.0029 33.8 6.7 74 276-364 311-384 (385)
104 PF11992 DUF3488: Domain of un 26.9 5.6E+02 0.012 28.8 11.3 18 521-538 155-172 (325)
105 PRK06133 glutamate carboxypept 24.0 1E+02 0.0022 35.5 4.9 58 305-366 352-409 (410)
106 PRK07338 hypothetical protein; 22.3 1.4E+02 0.0031 34.0 5.6 79 276-366 321-400 (402)
107 PRK10927 essential cell divisi 21.8 2.1E+02 0.0045 32.3 6.4 13 86-98 79-91 (319)
108 COG3090 DctM TRAP-type C4-dica 21.2 9E+02 0.019 24.8 12.6 57 537-597 102-158 (177)
No 1
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=100.00 E-value=3.6e-126 Score=1107.90 Aligned_cols=755 Identities=31% Similarity=0.505 Sum_probs=630.6
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcccc--cCCCCCCHHHHHHHHHHHHccCCCCCCCHHHH-
Q 002959 34 DSIHVSSAKRSGLVWTVVFATLICASYGVYYYQYEHMPPPLTAEQ--AGRRGFSELEAMKHVKALTQLGPHAVGSDALD- 110 (862)
Q Consensus 34 ~~~~~~~~~r~~~~~l~~~lll~~~~~~v~~~~~~~lP~~~~~~~--~~~~~fs~erA~~~L~~L~~igpr~~GS~~n~- 110 (862)
++..+..++|....++..+..++... +..+.+..+|.|++..+ ..+++|+++||++++++++++|||++||++|+
T Consensus 4 ~~~~~~~~~r~~~~~~~~~~f~~~~~--~~~~~~~~~~~pl~~~~e~~~~~~f~~~rA~~~l~~ls~~G~~~~gS~~ne~ 81 (834)
T KOG2194|consen 4 DKSFRRKRKRNGAPCLAHLIFLLSIA--IVLYLFDHLPEPLTQPQEQTLPSQFSEARALKDLLSLSAAGPHPVGSDNNEM 81 (834)
T ss_pred hhHhhhhhhhccchHHHHHHHHHHHH--HHHHHHhhccccCCCcchhcCchhhHHHHHHHHHHHHHhcCCcccCchhhHH
Confidence 33444455555555444444433332 33445566666665444 44689999999999999999999999999997
Q ss_pred HHHHHHHHHHHhcccccCCc-ceEEEEEEeccCCCccccccc-ccCccccccccceEEEEEcCCCCCCCCCCeEEEEeec
Q 002959 111 RALQYVLAASQKIKESKHWE-ADVEVDFFHAKSGANRVGTGV-FKGKTLIYSDLNHIVLRILPKYASEAGENAILVSSHI 188 (862)
Q Consensus 111 ~a~~yL~~~l~~lg~~~~~~-~~ve~d~~~~~~g~~~~~g~~-~~~~~~~Y~~~~NVi~~i~g~~~~~~~~~~Vll~AH~ 188 (862)
.+++|+++|+++++++++.+ +++|+|.+..+ |.+ .++++++|++++||++|+.+|. ..++.+||++||+
T Consensus 82 ~a~~~il~e~~~i~~~~~~~~~~~Evd~q~~s-------g~~~~~~~~~~Y~~i~NIvVki~~k~--~~~~~~lLlnaHf 152 (834)
T KOG2194|consen 82 HASSFILKEVNKIRKGSQSDLYDMEVDLQSAS-------GSFILEGMTLVYQNISNIVVKISPKN--GNDKNALLLNAHF 152 (834)
T ss_pred HHHHHHHHHHHHHHhhhhcchhhheeceeecc-------ceeeehhhhheeeeeeeEEEecCCCC--CCccceeeeeccc
Confidence 99999999999999876653 56777765532 222 2578999999999999999984 2444699999999
Q ss_pred CccCCCCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCCCCcchHHHHhcCCccCCccEEEEeecCcCCCCe
Q 002959 189 DTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGGRS 268 (862)
Q Consensus 189 Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD~~G~gG~~ 268 (862)
||||++|||+||++|||+|||++|++.+.....+|+|+|+||++||.+++|||+|++||||+++++++||||++|+||++
T Consensus 153 DSvpt~~gAtDDg~~va~mLe~lRv~s~~~~~l~~~vVFLfNgaEE~~L~gsH~FItQH~w~~~~ka~INLea~GsGGre 232 (834)
T KOG2194|consen 153 DSVPTGPGATDDGSGVASMLEALRVLSKSDKLLTHSVVFLFNGAEESGLLGSHAFITQHPWSKNIKAVINLEAAGSGGRE 232 (834)
T ss_pred cccCCCCCCCcchhHHHHHHHHHHHhhcCCCcccccEEEEecCcccchhhhcccceecChhhhhhheEEeccccCcccce
Confidence 99999999999999999999999999998777899999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCHHHHHHHHHHccCCCCcccccccccCCCCCCCCchHHHhhhcCCeEEEEeecCCCCCCCCcCCccCCCChhH
Q 002959 269 ALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGS 348 (862)
Q Consensus 269 ~lfq~g~~~~li~~~~~~a~~p~~~~l~~eif~~g~ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~Id~~s 348 (862)
++||+||++|+++.|.++++||+++++++|+||+|+|||+|||++|++++|+||+|+|+..|++.|||++|.++.+.+++
T Consensus 233 iLFQagp~~wl~k~Y~~~~phPf~stlgee~Fq~g~IpSdTDfrif~eyg~l~GLD~A~~~Ng~vYHTk~D~~~~i~~gs 312 (834)
T KOG2194|consen 233 ILFQAGPNHWLLKAYLQAAPHPFASTLGEELFQSGIIPSDTDFRIFREYGHLPGLDMAFVKNGYVYHTKYDGIQYIPPGS 312 (834)
T ss_pred eEEecCCchHHHHHHHhhCCCchhhhhHHHhhhcCcCccccchHHHHHhCCcccceeeeeeccceEEeecccccccCcch
Confidence 99999997799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCcccccCCCCCCeEEeeecCceEEEEehhHHHHHHHHHHHHHHHH----------
Q 002959 349 LQHLGENMLDFLLQTASSTSIPKGNAVEEEGKTVHETGVYFDILGKYMVLYHQHFANMLHNSVILQSLLI---------- 418 (862)
Q Consensus 349 Lq~~g~~~l~ll~~La~~~~l~~~~~~~~~~~~~~~~~VyFD~lG~~~v~y~~~~~~~l~~~v~~~~~~~---------- 418 (862)
+||+|+|++++++.++|+ ++.+ .++++++ +||||++|++|+.|+++++.+||+++.+...+.
T Consensus 313 ~q~tGen~L~~v~~lan~-el~~------~~~~~~g-~vyfdv~g~~~~~y~~~~~~iLNi~i~~~i~l~~~~~g~~~~~ 384 (834)
T KOG2194|consen 313 LQHTGENILALVRSLANS-ELDN------STERSKG-TVYFDVVGKYFLAYSESTGVILNITICISIWLMSLRSGSSQLG 384 (834)
T ss_pred hhhhhhHHHHHHHHHhch-hhcc------ccccCCC-ceehhhhhhhhheeehhhhhhhhhhhhhhhhhhhhcccchhhh
Confidence 999999999999999999 5442 3456677 999999999999999999999994433222111
Q ss_pred --------HHHHH-HhhhhhhHHHHHHHhhhceeeecccC-CcchhHHHHHHHhh-------------------hhhhHH
Q 002959 419 --------WTASL-VMGGYPAAVSLALTCLSAILMLYSKG-MQLSPVHQAALVKL-------------------EAERWL 469 (862)
Q Consensus 419 --------~~~~~-~~~~~~~~va~~~~~~~~~l~wys~~-~~~~~~~~~~~~~~-------------------~~~~~~ 469 (862)
.+.++ ...+++.+++++++..+..|+||+++ +.++.+.|+.+.++ ...+++
T Consensus 385 ~f~~~~~~~i~s~~~~~~l~~~~a~~l~~v~l~~sw~s~p~l~~~ly~~p~~~gl~~~~~~y~~~~~~~~~~~~~~~ql~ 464 (834)
T KOG2194|consen 385 KFILACLLQILSIVVAIGLPVLVALFLDWVGLPLSWFSNPWLLLGLYYLPSLFGLAILQALYAKRSKRHSLEYLQHDQLL 464 (834)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHhhcccccceeecchHHHHHHHHhHHHHHhhHHHHHHHhhccccccchhhHHHHH
Confidence 11122 22346778888888888899999999 55556666554322 223456
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002959 470 FKSGFLQWLILLALGNYYKIGSTYMALVWLVPPAFAYGFLEATLTPVRLTRPLKLATLLLGLAVPVLVSAGNIIRLANVL 549 (862)
Q Consensus 470 ~~~~~~~~~~l~~~~t~~~~~s~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~l~~~~~~~~ 549 (862)
+|+ +|++|++++|++++||+|++++|++||+++ ++++++.++|.++..|..++++||+.|+.+.+|.+++++.+|
T Consensus 465 ~h~---~l~~l~~~~t~y~I~S~y~~~~~~~~~v~~--~~~~~~~~l~~~~~~~~~~~~i~~~~p~~~~ay~~~~~~~~f 539 (834)
T KOG2194|consen 465 LHS---LLSILLIIMTYYGIRSAYLPLLLLLFYVIS--YLLNTLTILHLCGTLYLITLLICQVGPFLFAAYSTYSLVRTF 539 (834)
T ss_pred HHH---HHHHHHHHheecccchhHHHHHHHHHHHHH--HHHhhceeeccCCceeeeeeeeeehHhHHHHHHHHHHHHHee
Confidence 776 789999999999999999999999999999 557889999999999999999999999999999999999999
Q ss_pred HhhcccCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhcCCCCCCCccc-c
Q 002959 550 VATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASFILVGLSIIMVSSGIIPPFSEET-A 628 (862)
Q Consensus 550 ~p~~gR~~~~~~~~P~~~~d~~ia~~~a~~~~l~~~~l~p~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~fPy~~~~-~ 628 (862)
||||||+|.+. ||| ++||.++++++.+.++|++|++|+|||++.++.+++.++.+++++++|.++|||+.++ +
T Consensus 540 ipm~Gr~g~~~--nPd----~~i~~~~~~~~~l~~~f~i~l~~~fr~~~~i~~~l~~I~~~~~~i~~T~~~fPy~~~~~~ 613 (834)
T KOG2194|consen 540 IPMMGRFGNAS--NPD----LSISFLNAFGANLIVGFLIPLVHLFRRSKSIILGLFGITAVILIIASTSIGFPYRPKTTV 613 (834)
T ss_pred eccccccCCCC--Cch----HHHHHHHHHHHHhhHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHhcCCcCCccccccc
Confidence 99999999754 995 9999999999999999999999999999999999988888888889999999999875 6
Q ss_pred ceeEEEEEEeccCCCC---CccCCCccccccccC--------CCCChhH---HHhcccCcccCCCcccccccccccccce
Q 002959 629 RAVNIVHIVDASGKFG---GKQEPSSYIALYSAT--------PGKLTKE---VEQIKEGFVCGRDNVIDFVTSSMKYGCL 694 (862)
Q Consensus 629 ~r~~~~h~~r~~~~~~---~~~d~~~~~~~~~~~--------~~~l~~~---~~~C~~el~CG~p~~~~~~~~~~y~~~~ 694 (862)
+|+.++|++|++++.. ..+|+++++...|.. -.+++++ ..+|+.+++||+| +|. |
T Consensus 614 ~r~~~lH~~rtf~~~~~~~~~~ds~~~i~~~D~r~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p---------~y~--w 682 (834)
T KOG2194|consen 614 QRVPVLHVRRTFYDRDGTSSQNDSGYFINSQDRRGAEVLPFTKSNLTDLSSVQADCDDEMMCGMP---------VYN--W 682 (834)
T ss_pred eeEEEEecccceecccCceeecccceeeeecccccccCCcchhhcccccccccccccccccCCce---------eee--c
Confidence 7999999999965422 224555555544332 1122222 2569999999996 875 9
Q ss_pred eccCCCCccCCCC-------CCeeEeecccccccCCCCcceEEEEEEecCCCcEEEEEece---eecCcccccCCccccc
Q 002959 695 TDDNSEGGWSQSD-------IPTIHVNSDTVDTEGNENERITQVSIDMKGAKRLTLAINAK---EIEDFTFKVDSEELVP 764 (862)
Q Consensus 695 ~~~~~~~~Wlp~~-------~p~l~l~~~~~~~~~~~~~r~~r~~f~l~Gp~hmsl~I~p~---~l~~WSf~~~~~~~~p 764 (862)
.+.+.+++|+|++ +|++.+++|+. ++++ ..|++|++.|+|||++||+|. ++.+||| .+ .+
T Consensus 683 ~~~~~~~~~vp~~~~v~~~~~~~l~l~sk~~----~~~~-~~r~~~~i~~~d~~s~~i~p~~d~~~~~wsf--~~-~~-- 752 (834)
T KOG2194|consen 683 IKPREQSLWVPNPEPVIGPYPPNLKLLSKTS----LDNG-NLRYEFSITGTDHISLFISPLNDVKVLDWSF--TT-SP-- 752 (834)
T ss_pred cccCccceEecCCccccCCCCceEEEeeccc----cCCC-ceEEEEEEeccCceEEEEEecCCceEEEEec--cC-Cc--
Confidence 9999999999995 36899999955 4434 578999999999999999995 9999999 33 22
Q ss_pred CCCCCCCCccEEEEEEeC-CCCceEEEEEEEeccccccccCCCCCCCCCCCeEEEe------cCCCCCCHHHHHHHhcCC
Q 002959 765 RDAKSSIYGWHIIEFSGG-KNAASKFEIALYWAKNSTRAAGNSNGKEKQQPLVKLR------TDFDRLTPKTERVLSKLP 837 (862)
Q Consensus 765 ~~~~~~~~~~y~i~~s~G-~~~P~~F~lel~~~~~~~~~~~~~~~~~~~~pl~~l~------~~~~~~t~~~~~fl~~fP 837 (862)
..+ +.+ +|+||++|| ++.|++||+|+++. ++ .+++| +|++ +|.+++||++++|+++||
T Consensus 753 ~~~--~~~-~~~i~~~yg~~~~p~~F~lel~~~----------~~-~~~v~-~k~~~~~h~~~~~~~~t~~~~~~~~~lP 817 (834)
T KOG2194|consen 753 LTE--NKT-PYHIYFSYGLDSTPLNFWLELEKE----------EG-VTDVP-FKLGVSAHYIHDLELITPEYKEFLETLP 817 (834)
T ss_pred ccc--cCC-ceEEEEEeecCCCCceEEEEEeec----------cC-ccCCc-eEEeeeeeeccchhhcCHHHHHHHHhCC
Confidence 322 223 499999999 56999999999997 34 67888 8888 578899999999999999
Q ss_pred CCcccccccCCCccccc
Q 002959 838 PWCSLFEGSISSQPLSF 854 (862)
Q Consensus 838 ~wa~~~~~~~~~~~~~~ 854 (862)
|||+.+++|+|+.+..|
T Consensus 818 ~~~~~~~~~~~~~~~~~ 834 (834)
T KOG2194|consen 818 SWAATVDWSTSYESWIF 834 (834)
T ss_pred chhhccccccchhheeC
Confidence 99999999999987654
No 2
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=99.95 E-value=1e-28 Score=249.19 Aligned_cols=170 Identities=31% Similarity=0.488 Sum_probs=131.9
Q ss_pred CeEEEEeecCccC------CCCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCCCCcchHHHHhc-CCccCC
Q 002959 180 NAILVSSHIDTVS------AGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQ-HPWSTT 252 (862)
Q Consensus 180 ~~Vll~AH~Dsv~------~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~fv~~-h~~~~~ 252 (862)
++|+|+|||||++ .++||+||++|||+|||+||.|++.+.+++++|+|+|+++||.|+.||++|+++ +.+.++
T Consensus 1 e~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl~GS~~~~~~~~~~~~~ 80 (179)
T PF04389_consen 1 EYIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGLLGSRAFVEHDHEELDN 80 (179)
T ss_dssp EEEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTSHHHHHHHHHHHCHHHH
T ss_pred CEEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCccchHHHHHhhhccccc
Confidence 4799999999988 899999999999999999999999778889999999999999999999999963 355689
Q ss_pred ccEEEEeecCcCCCCeeEEEeCC-CHHHHHHHHHHccCCCCcccccccccCCCCCCCCchHHHhhhcCCeEEEEeecC-C
Q 002959 253 IRVAVDLEAMGIGGRSALFQAGP-NLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTD-K 330 (862)
Q Consensus 253 v~a~iNLD~~G~gG~~~lfq~g~-~~~li~~~~~~a~~p~~~~l~~eif~~g~ips~TD~~~F~~~~GIPgld~a~~~-~ 330 (862)
+.++||||++|.+++...++..+ .++.++.+.+....+.+..+..+.......+..+||.+|.. .|||++.+.... .
T Consensus 81 ~~~~inlD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sD~~~F~~-~gip~~~~~~~~~~ 159 (179)
T PF04389_consen 81 IAAVINLDMIGSGDPTVYSEGSPSLPSRLEAYLSSFKQPYGSSLGPDVPPEKPTFGGSDHYPFSK-AGIPAVTLSSTDGY 159 (179)
T ss_dssp EEEEEEECSSBSSSSEEEEEEGGGHHHHHHHHHHHHHHHHHCHTSSECEEEESSTTSSTCHHHHT-TT-EEEEEEESSSS
T ss_pred ceeEEeccccccCcccceeeeeccccchhhhhhhhhhhhhhcccccccccccCCCCCCCcHhhhc-CCEeEEEEEecCCC
Confidence 99999999999998888777655 23434433333323333333333332233556899999997 999999999888 7
Q ss_pred CCCCCCcCCccCCCChhHHH
Q 002959 331 SAVYHTKNDRLDLLKPGSLQ 350 (862)
Q Consensus 331 ~~~YHT~~Dt~d~Id~~sLq 350 (862)
.+.|||+.||++++|+++||
T Consensus 160 ~~~~Ht~~Dt~~~~~~~~l~ 179 (179)
T PF04389_consen 160 NPYYHTPEDTPDNLDPDTLQ 179 (179)
T ss_dssp GTTTTSTT-SGGGC-HHHH-
T ss_pred CCCCCCcccChhhcCCccCC
Confidence 78899999999999999987
No 3
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.95 E-value=1.8e-26 Score=253.86 Aligned_cols=261 Identities=20% Similarity=0.257 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHHc-cCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccce
Q 002959 86 ELEAMKHVKALTQ-LGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNH 164 (862)
Q Consensus 86 ~erA~~~L~~L~~-igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~N 164 (862)
.+-|.+++++|+. +++|.+||+++.++++||.++|+++|. +++.+.|...... ....+ .....-....|
T Consensus 30 ~~~a~~~~~~ia~~~~gR~~gS~~E~~aA~yL~~~f~~lG~------~v~~q~f~~~~~~-~~~~g---~~~~~~~~g~n 99 (346)
T PRK10199 30 GDFANTQARHIATFFPGRMTGSPAEMLSADYLRQQFQQMGY------QSDIRTFNSRYIY-TARDN---RKNWHNVTGST 99 (346)
T ss_pred cchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHCCC------ceEeeecccccee-ecccc---cccccCCccce
Confidence 4456778888875 889999999999999999999999984 3444333211000 00000 00000114689
Q ss_pred EEEEEcCCCCCCCCCCeEEEEeecCccC--------------CCCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEe
Q 002959 165 IVLRILPKYASEAGENAILVSSHIDTVS--------------AGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFN 230 (862)
Q Consensus 165 Vi~~i~g~~~~~~~~~~Vll~AH~Dsv~--------------~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~ 230 (862)
||++++|+ .++.|+++||+|||+ ..+||.||++|||+|||++|.|++. +++++|+|+++
T Consensus 100 VIa~~~G~-----~~~~Ill~AH~DTV~p~~~~~~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~--~~~~~I~fv~~ 172 (346)
T PRK10199 100 VIAAHEGK-----APQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAERLKNV--PTEYGIRFVAT 172 (346)
T ss_pred EEEEECCC-----CCCeEEEEEEcCcCCCCCCCccccCCCCcccCCccccHHHHHHHHHHHHHHhhC--CCCCcEEEEEE
Confidence 99999884 246899999999985 2479999999999999999999864 57889999999
Q ss_pred CCcCCCCcchHHHHhcCCc--cCCccEEEEeecCcCCCCeeEEEeCCC-HHHH-----HHHHHHccCCCCcccc-----c
Q 002959 231 TGEEEGLNGAHSFVTQHPW--STTIRVAVDLEAMGIGGRSALFQAGPN-LWAV-----ENFAAVAKYPSGQIIG-----Q 297 (862)
Q Consensus 231 ~aEE~gl~GS~~fv~~h~~--~~~v~a~iNLD~~G~gG~~~lfq~g~~-~~li-----~~~~~~a~~p~~~~l~-----~ 297 (862)
++||.|+.||+.|+++.+. .+++.++||+|+++.+. ..++..|.+ +..+ +...+.+ ...+..+. +
T Consensus 173 ~~EE~Gl~GS~~~~~~~~~~~~~~~~~~iNlD~~~~~d-~~~~~~g~~~~~~~~~~~~d~~~~~a-~~~g~~~~~~~~~~ 250 (346)
T PRK10199 173 SGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGD-KLYFNSGVNTPEAVRKLTRDRALAIA-RRHGIAATTNPGLN 250 (346)
T ss_pred CCcccCcHHHHHHHHhcCccchhcEEEEEEeccCCCCC-ceEEecCCCcHHHHhHHHHHHHHHHH-HHcCCccccCCCcc
Confidence 9999999999999976543 46899999999999764 445655542 2211 1122222 12332221 1
Q ss_pred ccccCCCCCCCCchHHHhhhcCCeEEEEeec-------------------CCCCCCC-CcCCccCCCCh-------hHHH
Q 002959 298 DLFASGVFETATDFQVYTEVAGLSGLDFAYT-------------------DKSAVYH-TKNDRLDLLKP-------GSLQ 350 (862)
Q Consensus 298 eif~~g~ips~TD~~~F~~~~GIPgld~a~~-------------------~~~~~YH-T~~Dt~d~Id~-------~sLq 350 (862)
..|..| ....|||.+|.+ .|||.+.+... ..+..+| |.+|+.++++. ..+.
T Consensus 251 ~~~p~g-~~~rSDH~~F~~-~GIP~l~~~a~n~~~g~~d~~~q~~~~~~~~~g~~~h~~~~d~~~~l~~~~pgri~~~~~ 328 (346)
T PRK10199 251 KNYPKG-TGCCNDAEVFDK-AGIPVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCR 328 (346)
T ss_pred ccccCC-CcCCcccHHHHh-cCCCeEEeeccccccCCcccceecccCccCCCCccccCcCcchHHHHHHhcchHHHHHHH
Confidence 223234 235799999999 99999987422 1255688 89999999885 2455
Q ss_pred HHHHHHHHHHHHHhcCC
Q 002959 351 HLGENMLDFLLQTASST 367 (862)
Q Consensus 351 ~~g~~~l~ll~~La~~~ 367 (862)
...+.++.++.+||++.
T Consensus 329 ~~~~~~~~~~~~~~~~~ 345 (346)
T PRK10199 329 DVVRIMLPLVKELAKAS 345 (346)
T ss_pred hHHHHHHHHHHHHhccC
Confidence 67789999999999863
No 4
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=99.88 E-value=1.8e-22 Score=238.82 Aligned_cols=205 Identities=19% Similarity=0.272 Sum_probs=162.1
Q ss_pred cccccceEEEEEcCCCCCCCCCCeEEEEeecCccCCCCCCCCChhHHHHHHHHHHHHHh---ccCCCCccEEEEEeCCcC
Q 002959 158 IYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQ---WAHEFKNAVIFLFNTGEE 234 (862)
Q Consensus 158 ~Y~~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~---~~~~p~~~I~Flf~~aEE 234 (862)
.-..++||+++|+|. .+++++|+|+||.|||. .||.|+++|+|.|+|++|.+.. .|++|+|+|+|++|+|||
T Consensus 334 ~~~ki~NIig~I~Gs---~epD~~ViigahrDSw~--~Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWdAeE 408 (702)
T KOG2195|consen 334 EETKIQNIIGKIEGS---EEPDRYVIIGAHRDSWT--FGAIDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWDAEE 408 (702)
T ss_pred eeeeeeeEEEEEecC---cCCCeEEEEeccccccc--cCCcCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEccchh
Confidence 345899999999996 58999999999999996 7899999999999999999865 689999999999999999
Q ss_pred CCCcchHHHHhcCCc--cCCccEEEEeecCcCCCCeeEEEeCCCHHHHHHHHHH---ccCCCCcccccccccCCCCCCCC
Q 002959 235 EGLNGAHSFVTQHPW--STTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAV---AKYPSGQIIGQDLFASGVFETAT 309 (862)
Q Consensus 235 ~gl~GS~~fv~~h~~--~~~v~a~iNLD~~G~gG~~~lfq~g~~~~li~~~~~~---a~~p~~~~l~~eif~~g~ips~T 309 (862)
.|+.||..|+++|.. ..+..++||+|+++.++.. |+...+|.+.+...++ .+.|........+ ....++|
T Consensus 409 fGliGStE~~E~~~~~L~~~av~yin~d~~~~~~~~--l~~~~~PlL~~li~~~~k~~~~p~~~~~~~~v---~~~g~~S 483 (702)
T KOG2195|consen 409 FGLLGSTEWAEEYLKNLKSRAVVYINVDNAVLGDYT--LHVKTTPLLTDLIEEAAKSVLSPDKGDQSNRV---LSLGGGS 483 (702)
T ss_pred ccccccHHHHHHHHHHhhheeEEEEeccccccCCce--eEEecCccHHHHHHHHHhccCCCCccccceeE---eccCCCC
Confidence 999999999998854 4789999999999998644 3333455555554444 3445433211112 1237899
Q ss_pred chHHHhhhcCCeEEEEeecCCCCCCCCcCCccCCC----Chh--HHHHHHHHHHHHHHHHhcCCCCCCC
Q 002959 310 DFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLL----KPG--SLQHLGENMLDFLLQTASSTSIPKG 372 (862)
Q Consensus 310 D~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~I----d~~--sLq~~g~~~l~ll~~La~~~~l~~~ 372 (862)
||..|..+.|||+++++|....+.|||.+||++.+ |+. .+..++.+....+..+++++.+|.+
T Consensus 484 d~~~F~~~~GIpsv~~~f~~~yP~yhs~~dt~~~~~k~~D~~~~~~~~~a~~~~~~~l~l~~d~llPfd 552 (702)
T KOG2195|consen 484 DYASFLQFAGIPSVDFAFNRTYPFYHSTYDTYEWLDKLLDPKFKQHLAAAGVLGLELLILADDPLLPFD 552 (702)
T ss_pred cchhhccccCcceeeeeecCCcceeecccCcHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCccccCc
Confidence 99999999999999999999999999999996544 443 4444666677777778887777754
No 5
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.9e-16 Score=165.73 Aligned_cols=249 Identities=18% Similarity=0.249 Sum_probs=181.6
Q ss_pred CCCCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccc
Q 002959 82 RGFSELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSD 161 (862)
Q Consensus 82 ~~fs~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~ 161 (862)
+.-+..|.++.|.-+- -||.+||+++.++++||.+.++.++ ..+|.|.|.... ...+.+
T Consensus 46 ~~s~~~~~~~~L~p~l--v~Rvpgs~g~~~vr~~i~~~l~~l~------w~ve~~~f~~~t-------------p~g~~~ 104 (338)
T KOG3946|consen 46 PDSDWNRLWENLLPIL--VPRVPGSPGSRQVRRFIIQHLRNLG------WAVETDAFTDNT-------------PLGTRN 104 (338)
T ss_pred CCCCHHHHHHhhhhhh--ccccCCCCccHHHHHHHHHHHHhcC------ceeeeccccccC-------------cceeee
Confidence 3456777777776664 3899999999999999999999996 468888766431 112447
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEEeecCccCC----CCCCCCChhHHHHHHHHHHHHHhcc----CCCCccEEEEEeCCc
Q 002959 162 LNHIVLRILPKYASEAGENAILVSSHIDTVSA----GEGAGDCSSCVAVMLELARVMSQWA----HEFKNAVIFLFNTGE 233 (862)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~----spGA~Dd~sgva~~LE~ar~L~~~~----~~p~~~I~Flf~~aE 233 (862)
..|||+++.+. ..+++++.|||||.-. -.||.|.+..||+||++++.|.+.- ..++-++.++|++||
T Consensus 105 f~nii~tl~~~-----A~r~lVlachydsk~~p~~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGE 179 (338)
T KOG3946|consen 105 FNNLIATLDPN-----ASRYLVLACHYDSKIFPGGMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGE 179 (338)
T ss_pred eeeEEEecCCC-----cchheeeecccccccCCCcceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccH
Confidence 89999999763 4578999999999632 1689999999999999999998732 245678999999999
Q ss_pred CC--------CCcchHHHHhcC------C-----ccCCccEEEEeecCcCCCCee--EEEeCCCHHHHHHH------HHH
Q 002959 234 EE--------GLNGAHSFVTQH------P-----WSTTIRVAVDLEAMGIGGRSA--LFQAGPNLWAVENF------AAV 286 (862)
Q Consensus 234 E~--------gl~GS~~fv~~h------~-----~~~~v~a~iNLD~~G~gG~~~--lfq~g~~~~li~~~------~~~ 286 (862)
|. .+.||++.+++. + ..+++...+-+|-.|+.+++. .|.. ++.|..+.- .++
T Consensus 180 EAf~eW~p~DSlYGsRhLA~~~~sw~~~~~r~~~~ld~idl~vLldllga~~p~f~~~~~~-t~~wF~Rl~~iE~~l~~~ 258 (338)
T KOG3946|consen 180 EAFEEWGPEDSLYGSRHLAAKWESWPHSGIRGDLLLDGIDLLVLLDLLGAPNPTFYNFFPN-TDRWFHRLQSIEGELALL 258 (338)
T ss_pred HHHhhcCCccccchHHHHHHHHhccCCCCCccccccccchHhhhHHHhcCCChhHhhcCcc-hHHHHHHHHHHHHHHHHH
Confidence 93 678999998761 1 125677888889889877653 2222 344543211 010
Q ss_pred ---ccCCCCcccccccccCCCCC--CCCchHHHhhhcCCeEEEEeecCCCCCCCCcCCccCCCChhHHHHHHHHHHHHHH
Q 002959 287 ---AKYPSGQIIGQDLFASGVFE--TATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLL 361 (862)
Q Consensus 287 ---a~~p~~~~l~~eif~~g~ip--s~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~Id~~sLq~~g~~~l~ll~ 361 (862)
..++. -...|+.|... -+.||.+|.+ +|+|.+.+.-.....++||+.|+..++|..+..+.+..+-.++.
T Consensus 259 g~l~s~r~----~~~~Fq~~~~~~~veDDHiPFlr-rgVPVLHlI~~pFPsvWHt~dD~e~nldy~tt~~~~lilr~Fv~ 333 (338)
T KOG3946|consen 259 GLLASHRL----PPRYFQPGGLSSVVEDDHIPFLR-RGVPVLHLIPVPFPSVWHTPDDNERNLDYATTDNLALIIRVFVA 333 (338)
T ss_pred HHHHhccC----CchhccccCccccccCCcchhhh-cCCceEEecCCCCcccccCccchhhcCCchhHHHHHHHHHHHHH
Confidence 11221 11124433221 2689999999 99999999888888999999999999999999888776666554
Q ss_pred H
Q 002959 362 Q 362 (862)
Q Consensus 362 ~ 362 (862)
+
T Consensus 334 e 334 (338)
T KOG3946|consen 334 E 334 (338)
T ss_pred H
Confidence 3
No 6
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=99.69 E-value=9.8e-17 Score=183.89 Aligned_cols=188 Identities=26% Similarity=0.337 Sum_probs=132.7
Q ss_pred ccceEEEEEcCCCC-------CCCCCCeEEEEeecCccCCCCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCc
Q 002959 161 DLNHIVLRILPKYA-------SEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGE 233 (862)
Q Consensus 161 ~~~NVi~~i~g~~~-------~~~~~~~Vll~AH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aE 233 (862)
...|+++++++... ....++.+++++|+|+++.++||.||++|+|++||++|.|++. +|+++|.|+++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~GA~DNasGva~llEiAr~l~~~--~p~~~v~f~~~~aE 260 (435)
T COG2234 183 TSKNVAATISGSSQIIEAIIGTAHSDSLGLLGAHIDSVPTGPGADDNASGVAALLELARVLKGN--PPKRTVRFVAFGAE 260 (435)
T ss_pred EEEEEeeeeecccccceEEEeccCCCceeeecccccCCcCCCCcccccHHHHHHHHHHHHHhcC--CCCceEEEEEecch
Confidence 45566666655300 1246688999999999999999999999999999999999985 49999999999999
Q ss_pred CCCCcchHHHHhcCC--ccCCccEEEEeecCcCCCCeeEEE---eCCC--HHHHHHHHHHccCCCCcccccccccCCCCC
Q 002959 234 EEGLNGAHSFVTQHP--WSTTIRVAVDLEAMGIGGRSALFQ---AGPN--LWAVENFAAVAKYPSGQIIGQDLFASGVFE 306 (862)
Q Consensus 234 E~gl~GS~~fv~~h~--~~~~v~a~iNLD~~G~gG~~~lfq---~g~~--~~li~~~~~~a~~p~~~~l~~eif~~g~ip 306 (862)
|.|+.||++|+.++. ..+++.++||+||.|..++...++ .+.. +.......+...++... .+. ....
T Consensus 261 E~Gl~GS~~~~~~~~~~~~~~~~~viN~Dm~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~ 334 (435)
T COG2234 261 ESGLLGSEAYVKRLSKDLDKKIALVINLDMLGSPNPTPTLILYGNGLERVPPGLRAVAALIGRPVDP-----STV-QDFD 334 (435)
T ss_pred hhcccccHHHHhcCCcchhhhhheEEecccccCCCCCcceEEeccCCccccchHHHHHHHHHhhccc-----ccc-CCCC
Confidence 999999999996655 256788899999999976322222 2111 11111111111122211 111 1234
Q ss_pred CCCchHHHhhhcCCeEEEEeecCCC-----CCCCCcCCccCCCChhHHHHHHHHHHHH
Q 002959 307 TATDFQVYTEVAGLSGLDFAYTDKS-----AVYHTKNDRLDLLKPGSLQHLGENMLDF 359 (862)
Q Consensus 307 s~TD~~~F~~~~GIPgld~a~~~~~-----~~YHT~~Dt~d~Id~~sLq~~g~~~l~l 359 (862)
..+||.+|.. +|+|++.+...... .++||..|+ ++ +...++..+..+.+.
T Consensus 335 ~~sd~~~f~~-~gi~~~~~~~~~~~~~~~~~~~~t~~d~-~~-d~~~~~~~~~~~~~~ 389 (435)
T COG2234 335 PRSDHYPFTE-AGIPSLFLFSGAPGGVEAVAWGHTAADT-DK-DLSTLDQHGDAVAAT 389 (435)
T ss_pred CCCcchhhhh-cCCcceeeeecCCccccccccccccccc-cc-chhhhcccchhhhhh
Confidence 5799999998 99999887755433 589999999 88 777777766444443
No 7
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.48 E-value=2.8e-13 Score=154.69 Aligned_cols=127 Identities=20% Similarity=0.141 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHccCC-------CCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccc
Q 002959 87 LEAMKHVKALTQLGP-------HAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIY 159 (862)
Q Consensus 87 erA~~~L~~L~~igp-------r~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y 159 (862)
.|.+++|.+|.+||. |...|+++.++++|+.++++++| +++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~G------l~v~~D----------------------- 53 (406)
T TIGR03176 3 KHFRQAIEELSSFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESG------LETRFD----------------------- 53 (406)
T ss_pred HHHHHHHHHHhccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcC------CEEEEc-----------------------
Confidence 588999999999852 66779999999999999999998 355554
Q ss_pred cccceEEEEEcCCCCCCCCCCeEEEEeecCccCCCCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCCC---
Q 002959 160 SDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEG--- 236 (862)
Q Consensus 160 ~~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~g--- 236 (862)
...|++++++|. .++.++|++++|+||||. .|..|+..||++.||++|.|++.+.+|+++|.++++.+||.+
T Consensus 54 -~~gN~~~~~~g~---~~~~~~i~~gsHlDtv~~-gG~~dg~~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~ 128 (406)
T TIGR03176 54 -DVGNLYGRLVGT---EFPEETILTGSHIDTVVN-GGNLDGQFGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFP 128 (406)
T ss_pred -CCCcEEEEecCC---CCCCCeEEEeccccCCCC-CCccCchhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccCC
Confidence 468999999995 345689999999999995 689999999999999999999998999999999999999986
Q ss_pred --CcchHHHHhcC
Q 002959 237 --LNGAHSFVTQH 247 (862)
Q Consensus 237 --l~GS~~fv~~h 247 (862)
+.||+.+..+.
T Consensus 129 ~~~~Gs~~~~g~~ 141 (406)
T TIGR03176 129 YVFWGSKNIFGLA 141 (406)
T ss_pred cccccHHHHhCCC
Confidence 99999998533
No 8
>PRK08262 hypothetical protein; Provisional
Probab=99.48 E-value=4.8e-13 Score=155.96 Aligned_cols=170 Identities=16% Similarity=0.197 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcccccCCCCCCHHHHHHHHHHHHccCCCCCCCHHH-------HHHHHH
Q 002959 43 RSGLVWTVVFATLICASYGVYYYQYEHMPPPLTAEQAGRRGFSELEAMKHVKALTQLGPHAVGSDAL-------DRALQY 115 (862)
Q Consensus 43 r~~~~~l~~~lll~~~~~~v~~~~~~~lP~~~~~~~~~~~~fs~erA~~~L~~L~~igpr~~GS~~n-------~~a~~y 115 (862)
|++++.+..++++++++++++++.|++..-.++ ...+..++.+++.+.|++|++|.. +.+.+++ .+..+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~L~~lv~i~S-~s~~~~~~~~~~~~~~~~~~ 78 (486)
T PRK08262 2 RRILLGLLALLLLLAAVLAVRTFRFKSRQIDVP--AVAPVAVDEDAAAERLSEAIRFRT-ISNRDRAEDDAAAFDALHAH 78 (486)
T ss_pred cchHHHHHHHHHHHHHhhhheeEEcccCCCCcc--ccCCCcCCHHHHHHHHHHhcccce-eccCCCCcccHHHHHHHHHH
Confidence 455666666667777788999888876555443 233567889999999999999743 3332211 357888
Q ss_pred HHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEEEEcCCCCCCCCCCeEEEEeecCccCC--
Q 002959 116 VLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSA-- 193 (862)
Q Consensus 116 L~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~-- 193 (862)
|.+++++++. +++.. .. +..|+++.++|+ .+..+.|++.+|+|+||.
T Consensus 79 L~~~~~~~g~------~~~~~--~~--------------------~~~~vv~~~~g~---~~~~~~ill~gH~DvVp~~~ 127 (486)
T PRK08262 79 LEESYPAVHA------ALERE--VV--------------------GGHSLLYTWKGS---DPSLKPIVLMAHQDVVPVAP 127 (486)
T ss_pred HHHhChhhhc------eeEEE--EE--------------------CCccEEEEEECC---CCCCCeEEEECcccccCCCC
Confidence 8888877762 22321 10 236888888774 123378999999999974
Q ss_pred ---------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCCCCcchHHHHhc
Q 002959 194 ---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (862)
Q Consensus 194 ---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~fv~~ 246 (862)
++|+.|+++|++++|.+++.|.+.+.+++++|.|+|..+||.|..|++.+++.
T Consensus 128 ~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~~~l~~~I~llf~~dEE~g~~G~~~l~~~ 201 (486)
T PRK08262 128 GTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLAQGFQPRRTIYLAFGHDEEVGGLGARAIAEL 201 (486)
T ss_pred CCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHHcCCCCCCeEEEEEecccccCCcCHHHHHHH
Confidence 37999999999999999999998877788999999999999998999988853
No 9
>PRK09133 hypothetical protein; Provisional
Probab=99.46 E-value=1.4e-12 Score=151.39 Aligned_cols=151 Identities=21% Similarity=0.256 Sum_probs=117.0
Q ss_pred CCCCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccc
Q 002959 82 RGFSELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSD 161 (862)
Q Consensus 82 ~~fs~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~ 161 (862)
.+++.+++.+.|++|++|.. ..+..++.++.+||.++|+++|.+. ..++++ .. ..+
T Consensus 32 ~~~~~~~~~~~l~~Lv~i~S-~s~~~~e~~~~~~l~~~l~~~G~~~---~~~~~~--~~------------------~~~ 87 (472)
T PRK09133 32 PTADQQAARDLYKELIEINT-TASTGSTTPAAEAMAARLKAAGFAD---ADIEVT--GP------------------YPR 87 (472)
T ss_pred cchhHHHHHHHHHHHhccCC-CCCCcchHHHHHHHHHHHHHcCCCc---eEEEec--cC------------------CCC
Confidence 56889999999999999833 3323345689999999999998321 012221 10 114
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEEeecCccCC--------------------CCCCCCChhHHHHHHHHHHHHHhccCCC
Q 002959 162 LNHIVLRILPKYASEAGENAILVSSHIDTVSA--------------------GEGAGDCSSCVAVMLELARVMSQWAHEF 221 (862)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p 221 (862)
..||+++++|+ .+.+.|++++|+|+||. ++|+.|+++|++++|++++.|.+.+..+
T Consensus 88 ~~nli~~~~g~----~~~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~~ 163 (472)
T PRK09133 88 KGNLVARLRGT----DPKKPILLLAHMDVVEAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREGFKP 163 (472)
T ss_pred ceeEEEEecCC----CCCCcEEEEeecccCCCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcCCCC
Confidence 67999999774 23367999999999984 4899999999999999999999887788
Q ss_pred CccEEEEEeCCcC-CCCcchHHHHhcCCccCCccEEEEeec
Q 002959 222 KNAVIFLFNTGEE-EGLNGAHSFVTQHPWSTTIRVAVDLEA 261 (862)
Q Consensus 222 ~~~I~Flf~~aEE-~gl~GS~~fv~~h~~~~~v~a~iNLD~ 261 (862)
+++|.|+|..+|| .|..|++.++++++...+..++|+ |.
T Consensus 164 ~~~i~~~~~~dEE~~g~~G~~~l~~~~~~~~~~~~~i~-e~ 203 (472)
T PRK09133 164 KRDIILALTGDEEGTPMNGVAWLAENHRDLIDAEFALN-EG 203 (472)
T ss_pred CCCEEEEEECccccCccchHHHHHHHHhhccCeEEEEE-CC
Confidence 9999999999999 788999999977664334567788 64
No 10
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=99.42 E-value=2.5e-12 Score=146.85 Aligned_cols=129 Identities=18% Similarity=0.189 Sum_probs=107.5
Q ss_pred CCHHHHHHHHHHHHccC------CCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccc
Q 002959 84 FSELEAMKHVKALTQLG------PHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTL 157 (862)
Q Consensus 84 fs~erA~~~L~~L~~ig------pr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~ 157 (862)
.+.+++++++.+|.+|+ .|+..|.++.++++||.++|+++| ++++.+
T Consensus 6 ~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G------~~~~~~--------------------- 58 (414)
T PRK12890 6 INGERLLARLEELAAIGRDGPGWTRLALSDEERAARALLAAWMRAAG------LEVRRD--------------------- 58 (414)
T ss_pred cCHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCC------CEEEEc---------------------
Confidence 35689999999999875 356778888899999999999998 334431
Q ss_pred cccccceEEEEEcCCCCCCCCCCeEEEEeecCccCCCCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCC--
Q 002959 158 IYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEE-- 235 (862)
Q Consensus 158 ~Y~~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~-- 235 (862)
...|++++++|+ ..+.+.|++++|+|+||. .|+.|+++|+|++|++++.|.+.+.+++++|.|+++.+||.
T Consensus 59 ---~~~nlia~~~g~---~~~~~~l~~~~H~DtVp~-~g~~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~ 131 (414)
T PRK12890 59 ---AAGNLFGRLPGR---DPDLPPLMTGSHLDTVPN-GGRYDGILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVR 131 (414)
T ss_pred ---CCCcEEEEeCCC---CCCCCEEEEeCcccCCCC-CCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEecccccc
Confidence 245999999874 134578999999999995 57899999999999999999988878899999999999997
Q ss_pred ---CCcchHHHHhc
Q 002959 236 ---GLNGAHSFVTQ 246 (862)
Q Consensus 236 ---gl~GS~~fv~~ 246 (862)
++.||+.+...
T Consensus 132 ~~~~~~G~~~~~~~ 145 (414)
T PRK12890 132 FGPSMIGSRALAGT 145 (414)
T ss_pred cCCccccHHHHHcc
Confidence 66899888743
No 11
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=99.39 E-value=4.1e-12 Score=145.32 Aligned_cols=128 Identities=20% Similarity=0.249 Sum_probs=107.9
Q ss_pred CCCHHHHHHHHHHHHccC--C-----CCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCc
Q 002959 83 GFSELEAMKHVKALTQLG--P-----HAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGK 155 (862)
Q Consensus 83 ~fs~erA~~~L~~L~~ig--p-----r~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~ 155 (862)
.++.+|.+++++.|.+|| | |...|.++.++++||.++|++.| ++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G------~~v~~~------------------- 60 (414)
T PRK12891 6 RVDGERLWASLERMAQIGATPKGGVCRLALTDGDREARDLFVAWARDAG------CTVRVD------------------- 60 (414)
T ss_pred ccCHHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCC------CEEEEC-------------------
Confidence 346679999999999985 2 67788898999999999999998 344442
Q ss_pred cccccccceEEEEEcCCCCCCCCCCeEEEEeecCccCCCCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCC
Q 002959 156 TLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEE 235 (862)
Q Consensus 156 ~~~Y~~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~ 235 (862)
...|++++++|. ....+.|++++|+||||. .|..|++.||+++|++++.|++.+.+++++|.|+++.+||.
T Consensus 61 -----~~gNl~a~~~g~---~~~~~~l~~~~H~DtVp~-gg~~D~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~ 131 (414)
T PRK12891 61 -----AMGNLFARRAGR---DPDAAPVMTGSHADSQPT-GGRYDGIYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEG 131 (414)
T ss_pred -----CCCCEEEEecCC---CCCCCeEEEEecccCCCC-CccccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccc
Confidence 245999999874 234578999999999995 47789999999999999999998889999999999999998
Q ss_pred C-----CcchHHHH
Q 002959 236 G-----LNGAHSFV 244 (862)
Q Consensus 236 g-----l~GS~~fv 244 (862)
| +.||+.+.
T Consensus 132 ~~f~~~~~Gs~~~~ 145 (414)
T PRK12891 132 SRFAPSMVGSGVFF 145 (414)
T ss_pred CcCCcccccHHHHh
Confidence 5 57998775
No 12
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.38 E-value=4.5e-12 Score=144.29 Aligned_cols=126 Identities=20% Similarity=0.163 Sum_probs=105.9
Q ss_pred HHHHHHHHHHccCC-------CCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcccccc
Q 002959 88 EAMKHVKALTQLGP-------HAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYS 160 (862)
Q Consensus 88 rA~~~L~~L~~igp-------r~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~ 160 (862)
|.+++|.++.+++. |...|+++.++++||.++|+++| +++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~~~~~G------~~~~~~------------------------ 51 (401)
T TIGR01879 2 RLWETLMWLGEVGADPAGGMTRLALSPEDREAQDLFKKRMRAAG------LEVRFD------------------------ 51 (401)
T ss_pred hHHHHHHHHhcccCCCCCceEeCCCCHHHHHHHHHHHHHHHHCC------CEEEEe------------------------
Confidence 67889999998853 44558888899999999999998 344432
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEEeecCccCCCCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCC-----
Q 002959 161 DLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEE----- 235 (862)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~----- 235 (862)
...||+++++|. ..+.+.|++++|+||||. .|..|+..|++++|++++.|++.+.+++++|.|+++.+||.
T Consensus 52 ~~~nl~a~~~g~---~~~~~~l~~~~H~DtV~~-gg~~dg~~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~ 127 (401)
T TIGR01879 52 EVGNLIGRKEGT---EPPLEVVLSGSHIDTVVN-GGNFDGQLGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFPY 127 (401)
T ss_pred cCCcEEEEecCC---CCCCCEEEEecccccCCC-CCccCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCccc
Confidence 246999999874 233578999999999995 47899999999999999999999889999999999999997
Q ss_pred CCcchHHHHhcC
Q 002959 236 GLNGAHSFVTQH 247 (862)
Q Consensus 236 gl~GS~~fv~~h 247 (862)
|+.||+.++.+.
T Consensus 128 ~~~Gs~~~~~~~ 139 (401)
T TIGR01879 128 GMWGSRNMVGLA 139 (401)
T ss_pred ccccHHHHhccc
Confidence 789999998544
No 13
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=99.38 E-value=6.3e-12 Score=143.60 Aligned_cols=130 Identities=20% Similarity=0.208 Sum_probs=108.0
Q ss_pred CCHHHHHHHHHHHHccCC-------CCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcc
Q 002959 84 FSELEAMKHVKALTQLGP-------HAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKT 156 (862)
Q Consensus 84 fs~erA~~~L~~L~~igp-------r~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~ 156 (862)
.+.+++++++++|+++++ |+..|.++.++.+||.++|+++| ++++.+
T Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g------~~~~~~-------------------- 57 (413)
T PRK09290 4 IDAERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAG------LTVRVD-------------------- 57 (413)
T ss_pred cCHHHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcC------CEEEEc--------------------
Confidence 567999999999999954 55778888899999999999997 334431
Q ss_pred ccccccceEEEEEcCCCCCCCCCCeEEEEeecCccCCCCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCC-
Q 002959 157 LIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEE- 235 (862)
Q Consensus 157 ~~Y~~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~- 235 (862)
...|++++++|. ..+.+.|++++|+|+||. .|..|++.|+|+|+++++.|.+.+.+++++|+|+++.+||.
T Consensus 58 ----~~~nl~a~~~g~---~~~~~~l~l~gH~DtVp~-~g~~d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g 129 (413)
T PRK09290 58 ----AVGNLFGRLEGR---DPDAPAVLTGSHLDTVPN-GGRFDGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGS 129 (413)
T ss_pred ----CCCcEEEEecCC---CCCCCEEEEecCccCCCC-CCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccc
Confidence 246999999763 123468999999999995 47789999999999999999998888899999999999998
Q ss_pred ----CCcchHHHHhcC
Q 002959 236 ----GLNGAHSFVTQH 247 (862)
Q Consensus 236 ----gl~GS~~fv~~h 247 (862)
|+.|++.+++++
T Consensus 130 ~~g~~~~G~~~~~~~~ 145 (413)
T PRK09290 130 RFGPAMLGSRVFTGAL 145 (413)
T ss_pred cccCccccHHHHHccc
Confidence 568999888554
No 14
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=99.38 E-value=1.3e-11 Score=140.89 Aligned_cols=146 Identities=22% Similarity=0.294 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHHHccCCCCCCCH-HHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccc
Q 002959 85 SELEAMKHVKALTQLGPHAVGSD-ALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLN 163 (862)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS~-~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~ 163 (862)
..+++.+.|++|++| |...+.+ ++.++.+||.++|+++| ++++.+... .....
T Consensus 35 ~~~~~~~~l~~lv~i-~S~s~~~~~~~~~~~~l~~~L~~~G------~~v~~~~~~-------------------~~~~~ 88 (410)
T PRK06133 35 EQPAYLDTLKELVSI-ESGSGDAEGLKQVAALLAERLKALG------AKVERAPTP-------------------PSAGD 88 (410)
T ss_pred hHHHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHHHHHHhCC------CeEEEEccC-------------------CCCCC
Confidence 446788999999998 3333433 34689999999999998 334432110 00246
Q ss_pred eEEEEEcCCCCCCCCCCeEEEEeecCccCC-----------------CCCCCCChhHHHHHHHHHHHHHhccCCCCccEE
Q 002959 164 HIVLRILPKYASEAGENAILVSSHIDTVSA-----------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVI 226 (862)
Q Consensus 164 NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~-----------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~ 226 (862)
|++++++|. +.+.|++.+|+|+||. ++|+.|+++|++++|++++.|.+.+.+++.+|.
T Consensus 89 ~lia~~~g~-----~~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~ 163 (410)
T PRK06133 89 MVVATFKGT-----GKRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLT 163 (410)
T ss_pred eEEEEECCC-----CCceEEEEeecCccCCCCccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEE
Confidence 999999763 2367999999999984 479999999999999999999987777788999
Q ss_pred EEEeCCcCCCCcchHHHHhcCCccCCccEEEEeecCc
Q 002959 227 FLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMG 263 (862)
Q Consensus 227 Flf~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD~~G 263 (862)
|+|..+||.|..|++.++++.. .+...++++|...
T Consensus 164 ~~~~~dEE~g~~G~~~~~~~~~--~~~d~~i~~ep~~ 198 (410)
T PRK06133 164 VLFNPDEETGSPGSRELIAELA--AQHDVVFSCEPGR 198 (410)
T ss_pred EEEECCcccCCccHHHHHHHHh--ccCCEEEEeCCCC
Confidence 9999999999999999997643 2457788887443
No 15
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.36 E-value=5.1e-12 Score=150.76 Aligned_cols=128 Identities=16% Similarity=0.130 Sum_probs=108.0
Q ss_pred CHHHHHHHHHHHHccCC----------CCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccC
Q 002959 85 SELEAMKHVKALTQLGP----------HAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKG 154 (862)
Q Consensus 85 s~erA~~~L~~L~~igp----------r~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~ 154 (862)
-.+|.++++.+|++|+. |...|++..++++||.++++++|.+ ++++|
T Consensus 179 ~~~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~Gl~-----~v~~D------------------ 235 (591)
T PRK13590 179 LGNDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCGFD-----EVHID------------------ 235 (591)
T ss_pred HHHHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcCCC-----eeeEC------------------
Confidence 46899999999999753 3344889999999999999999820 34443
Q ss_pred ccccccccceEEEEEcCCCCCCCCCCeEEEEeecCccCCCCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcC
Q 002959 155 KTLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEE 234 (862)
Q Consensus 155 ~~~~Y~~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE 234 (862)
...||+++++|+ .+..+.|++++|+|||+. .|..|+..||+++||++|.|.+.+.+++++|.|++|.+||
T Consensus 236 ------~~GNl~~~~~g~---~~~~~~v~~gsHlDTV~~-gG~~DG~~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~EE 305 (591)
T PRK13590 236 ------AVGNVVGRYKGS---TPQAKRLLTGSHYDTVRN-GGKYDGRLGIFVPMACVRELHRQGRRLPFGLEVVGFAEEE 305 (591)
T ss_pred ------CCCCEEEEecCC---CCCCCeEEEecccccCCC-CCCcccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCc
Confidence 468999999985 234578999999999985 5889999999999999999999988889999999999999
Q ss_pred C-----CCcchHHHHh
Q 002959 235 E-----GLNGAHSFVT 245 (862)
Q Consensus 235 ~-----gl~GS~~fv~ 245 (862)
. ++.||+.+..
T Consensus 306 g~rF~~~~~GS~~~~G 321 (591)
T PRK13590 306 GQRYKATFLGSGALIG 321 (591)
T ss_pred cccCCccccchHHHhC
Confidence 7 5899998764
No 16
>PRK08596 acetylornithine deacetylase; Validated
Probab=99.36 E-value=1.3e-11 Score=141.38 Aligned_cols=145 Identities=18% Similarity=0.212 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHccCCCCCCC-HHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceE
Q 002959 87 LEAMKHVKALTQLGPHAVGS-DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (862)
Q Consensus 87 erA~~~L~~L~~igpr~~GS-~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (862)
+++.+.|++|.+|. -+.+. .++.++.+||.++|+++| ++++.+. . +....||
T Consensus 13 ~~~~~~l~~Lv~i~-S~s~~~~~e~~~a~~l~~~l~~~G------~~~~~~~--~------------------~~~~~nv 65 (421)
T PRK08596 13 DELLELLKTLVRFE-TPAPPARNTNEAQEFIAEFLRKLG------FSVDKWD--V------------------YPNDPNV 65 (421)
T ss_pred HHHHHHHHHHhcCC-CCCCCchhHHHHHHHHHHHHHHCC------CeEEEEE--c------------------cCCCceE
Confidence 67889999999973 22222 244678999999999998 3344321 1 0135799
Q ss_pred EEEEcCCCCCCCCCCeEEEEeecCccCC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCcc
Q 002959 166 VLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNA 224 (862)
Q Consensus 166 i~~i~g~~~~~~~~~~Vll~AH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (862)
+++++|+. ....+.|+|.+|+|+||. ++|+.|+++|++++|.+++.|.+.+..++.+
T Consensus 66 ia~~~g~~--~~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~ 143 (421)
T PRK08596 66 VGVKKGTE--SDAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPGD 143 (421)
T ss_pred EEEecCCC--CCCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcCCCCCCc
Confidence 99998741 122357999999999874 3899999999999999999999988788899
Q ss_pred EEEEEeCCcCCCCcchHHHHhcCCccCCccEEEEeecCc
Q 002959 225 VIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMG 263 (862)
Q Consensus 225 I~Flf~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD~~G 263 (862)
|+|+|..+||.|..|++.++++.. ....+|+.|..+
T Consensus 144 v~~~~~~dEE~g~~G~~~~~~~~~---~~d~~i~~ep~~ 179 (421)
T PRK08596 144 LIFQSVIGEEVGEAGTLQCCERGY---DADFAVVVDTSD 179 (421)
T ss_pred EEEEEEeccccCCcCHHHHHhcCC---CCCEEEECCCCC
Confidence 999999999999999999996543 346788888543
No 17
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.35 E-value=5.6e-12 Score=150.35 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=112.7
Q ss_pred CCHHHHHHHHHHHHccC----------CCCCCCHHHHHHHHHHHHHHHhcccccCCcce-EEEEEEeccCCCcccccccc
Q 002959 84 FSELEAMKHVKALTQLG----------PHAVGSDALDRALQYVLAASQKIKESKHWEAD-VEVDFFHAKSGANRVGTGVF 152 (862)
Q Consensus 84 fs~erA~~~L~~L~~ig----------pr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~-ve~d~~~~~~g~~~~~g~~~ 152 (862)
-..+|.+++|.+|++|| .|...|+++.++++|+.++++++| ++ +++|
T Consensus 178 ~~~~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~G------l~~v~~D---------------- 235 (591)
T PRK13799 178 AIGADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAG------FDEVEID---------------- 235 (591)
T ss_pred hHHHHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcC------CCeEeEC----------------
Confidence 36789999999999986 156678999999999999999998 34 5554
Q ss_pred cCccccccccceEEEEEcCCCCCCCCCCeEEEEeecCccCCCCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCC
Q 002959 153 KGKTLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTG 232 (862)
Q Consensus 153 ~~~~~~Y~~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~a 232 (862)
...||+++++|+ +++.+.|++++|+|||+ ..|..|...||+++||++|.|.+.+.+++++|.++.|.+
T Consensus 236 --------~~gNv~~~~~g~---~~~~p~v~~gSHlDTV~-~gG~~DG~~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~ 303 (591)
T PRK13799 236 --------AVGNVVGRYKAA---DDDAKTLITGSHYDTVR-NGGKYDGREGIFLAIACVKELHEQGERLPFHFEVIAFAE 303 (591)
T ss_pred --------CCCCEEEEcCCC---CCCCCeEEEeccccccC-CCCccccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecC
Confidence 578999999885 24568999999999998 488999999999999999999999999999999999999
Q ss_pred cCC-----CCcchHHHHh
Q 002959 233 EEE-----GLNGAHSFVT 245 (862)
Q Consensus 233 EE~-----gl~GS~~fv~ 245 (862)
||. ++.||+.+..
T Consensus 304 EEg~rF~~~~~GS~~~~G 321 (591)
T PRK13799 304 EEGQRFKATFLGSGALIG 321 (591)
T ss_pred CCccCCCccccchHHHhC
Confidence 997 7899999973
No 18
>PRK07473 carboxypeptidase; Provisional
Probab=99.34 E-value=2.9e-11 Score=136.79 Aligned_cols=150 Identities=17% Similarity=0.183 Sum_probs=114.0
Q ss_pred CCCHHHHHHHHHHHHccCCCCCCCHHH-HHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccc
Q 002959 83 GFSELEAMKHVKALTQLGPHAVGSDAL-DRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSD 161 (862)
Q Consensus 83 ~fs~erA~~~L~~L~~igpr~~GS~~n-~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~ 161 (862)
.++.+++.+.|++|++|. -+.+.+++ .+..+|+.++|+++|. +++.. .... + .
T Consensus 7 ~~~~~~~~~~l~~Lv~i~-S~s~~~~~~~~~~~~l~~~l~~~G~------~~~~~--~~~~------~-----------~ 60 (376)
T PRK07473 7 PFDSEAMLAGLRPWVECE-SPTWDAAAVNRMLDLAARDMAIMGA------TIERI--PGRQ------G-----------F 60 (376)
T ss_pred CcCHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHcCC------eEEEe--cCCC------C-----------C
Confidence 366889999999999984 34454443 5778899999999983 34432 1100 0 1
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEEeecCccCC-----------------CCCCCCChhHHHHHHHHHHHHHhccCCCCcc
Q 002959 162 LNHIVLRILPKYASEAGENAILVSSHIDTVSA-----------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNA 224 (862)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~-----------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (862)
..|+++++++. ....+.|++++|+|+|+. ++|+.|+++|+++||.+++.|.+.+..++.+
T Consensus 61 ~~~~~~~~~~~---~~~~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~ 137 (376)
T PRK07473 61 GDCVRARFPHP---RQGEPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLP 137 (376)
T ss_pred CCeEEEEeCCC---CCCCCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCC
Confidence 35899988753 124578999999999952 4899999999999999999999877666778
Q ss_pred EEEEEeCCcCCCCcchHHHHhcCCccCCccEEEEeecCc
Q 002959 225 VIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMG 263 (862)
Q Consensus 225 I~Flf~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD~~G 263 (862)
|.|+|..+||.|..|++.+++++.. ...++|..|..+
T Consensus 138 v~~~~~~dEE~g~~g~~~~~~~~~~--~~d~~iv~ep~~ 174 (376)
T PRK07473 138 ITVLFTPDEEVGTPSTRDLIEAEAA--RNKYVLVPEPGR 174 (376)
T ss_pred EEEEEeCCcccCCccHHHHHHHhhc--cCCEEEEeCCCC
Confidence 9999999999999999999965433 347788888654
No 19
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=99.33 E-value=1.7e-11 Score=139.74 Aligned_cols=130 Identities=21% Similarity=0.249 Sum_probs=107.2
Q ss_pred CCCHHHHHHHHHHHHccCC------CCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcc
Q 002959 83 GFSELEAMKHVKALTQLGP------HAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKT 156 (862)
Q Consensus 83 ~fs~erA~~~L~~L~~igp------r~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~ 156 (862)
+++.+|+++.+++|++++. |+..++++.++++||.++|+++| ++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G------~~~~~~-------------------- 59 (412)
T PRK12892 6 RIDGQRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAG------LAVRID-------------------- 59 (412)
T ss_pred cccHHHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcC------CEEEEc--------------------
Confidence 3467899999999999864 35557777899999999999998 334432
Q ss_pred ccccccceEEEEEcCCCCCCCCCCeEEEEeecCccCCCCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCC-
Q 002959 157 LIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEE- 235 (862)
Q Consensus 157 ~~Y~~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~- 235 (862)
...|++++++|+ .+.+.|++++|+|+||. .|-.|+..|+|++|++++.|.+.+.+++++|.|+++.+||.
T Consensus 60 ----~~~nl~a~~~g~----~~~~~l~l~gH~DtVp~-~g~~dg~~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~ 130 (412)
T PRK12892 60 ----GIGNVFGRLPGP----GPGPALLVGSHLDSQNL-GGRYDGALGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGS 130 (412)
T ss_pred ----CCCcEEEEecCC----CCCCeEEEEccccCCCC-CCcccchHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCcccc
Confidence 245999999874 22378999999999995 46789999999999999999998888999999999999998
Q ss_pred ----CCcchHHHHhcC
Q 002959 236 ----GLNGAHSFVTQH 247 (862)
Q Consensus 236 ----gl~GS~~fv~~h 247 (862)
|+.||+.++.++
T Consensus 131 ~~~~~~~Gs~~~~~~~ 146 (412)
T PRK12892 131 RFTPGFLGSRAYAGRL 146 (412)
T ss_pred cccCccccHHHHHcCC
Confidence 468999998543
No 20
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=99.33 E-value=1.6e-11 Score=140.01 Aligned_cols=131 Identities=19% Similarity=0.215 Sum_probs=107.2
Q ss_pred CCCHHHHHHHHHHHHccCC-------CCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCc
Q 002959 83 GFSELEAMKHVKALTQLGP-------HAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGK 155 (862)
Q Consensus 83 ~fs~erA~~~L~~L~~igp-------r~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~ 155 (862)
+.+.++++++|++|++|.. |..+|.++.++.+||.++|+++| ++++++
T Consensus 6 ~~~~~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G------~~~~~~------------------- 60 (412)
T PRK12893 6 RINGERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAG------LTVSVD------------------- 60 (412)
T ss_pred ccCHHHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcC------CEEEEc-------------------
Confidence 3467899999999999863 33457777899999999999998 334331
Q ss_pred cccccccceEEEEEcCCCCCCCCCCeEEEEeecCccCCCCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCC
Q 002959 156 TLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEE 235 (862)
Q Consensus 156 ~~~Y~~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~ 235 (862)
...|++++++|. ..+.+.|++++|+|+||. .|..|++.|++++|++++.|.+.+.+++++|+|+|+.+||.
T Consensus 61 -----~~~n~~a~~~g~---~~~~~~l~l~~H~DtVp~-~g~~dgk~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~ 131 (412)
T PRK12893 61 -----AIGNLFGRRAGT---DPDAPPVLIGSHLDTQPT-GGRFDGALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEG 131 (412)
T ss_pred -----CCCcEEEEeCCC---CCCCCEEEEEecccCCCC-CCcccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEEccccc
Confidence 235999999874 123578999999999994 57789999999999999999998878899999999999998
Q ss_pred C-----CcchHHHHhcC
Q 002959 236 G-----LNGAHSFVTQH 247 (862)
Q Consensus 236 g-----l~GS~~fv~~h 247 (862)
| +.|+..+..++
T Consensus 132 g~~~~~~~G~~~~~~~~ 148 (412)
T PRK12893 132 ARFAPAMLGSGVFTGAL 148 (412)
T ss_pred cccccccccHHHHhCcC
Confidence 6 78999888543
No 21
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=99.31 E-value=2.4e-11 Score=136.83 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=107.5
Q ss_pred HHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEEEEc
Q 002959 91 KHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRIL 170 (862)
Q Consensus 91 ~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~ 170 (862)
+.|++|.++......+.++.++++||.++|+++|. +++... ...+ . .....|+++.+.
T Consensus 2 ~~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~------~~~~~~--~~~~-----------~---~~~~~~~~~~~~ 59 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGGNEETIANYIKDLLREFGF------STDVIE--ITDD-----------R---LKVLGKVVVKEP 59 (375)
T ss_pred hhHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCC------ceEEEe--cCch-----------h---cccccceEEecc
Confidence 46788888743222345667899999999999983 333321 1000 0 002346777777
Q ss_pred CCCCCCCCCCeEEEEeecCccCCC---------------------CCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEE
Q 002959 171 PKYASEAGENAILVSSHIDTVSAG---------------------EGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLF 229 (862)
Q Consensus 171 g~~~~~~~~~~Vll~AH~Dsv~~s---------------------pGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf 229 (862)
|. .+.+.|++.+|+|+||.. +|+.|+++|+|++|++++.|.+.+.+++++|.|+|
T Consensus 60 g~----~~~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~ 135 (375)
T TIGR01910 60 GN----GNEKSLIFNGHYDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQS 135 (375)
T ss_pred CC----CCCCEEEEecccccccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEE
Confidence 63 235789999999999863 69999999999999999999987777889999999
Q ss_pred eCCcCCCCcchHHHHhcCCccCCccEEEEeecCc
Q 002959 230 NTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMG 263 (862)
Q Consensus 230 ~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD~~G 263 (862)
..+||.|..|++.++++ ...++...+|..|..|
T Consensus 136 ~~~EE~g~~G~~~~~~~-~~~~~~d~~i~~~~~~ 168 (375)
T TIGR01910 136 VVDEESGEAGTLYLLQR-GYFKDADGVLIPEPSG 168 (375)
T ss_pred EcCcccCchhHHHHHHc-CCCCCCCEEEECCCCC
Confidence 99999999999999954 3333466777777543
No 22
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.30 E-value=3.1e-11 Score=135.92 Aligned_cols=139 Identities=17% Similarity=0.227 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEE
Q 002959 87 LEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIV 166 (862)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NVi 166 (862)
+++.+.|++|.++ |-+.+ .+.++++||.++|+++|. +++.+. .. ....|++
T Consensus 2 ~~~~~~l~~Lv~i-~s~s~--~e~~~~~~l~~~l~~~G~------~~~~~~--~~------------------~~~~~l~ 52 (377)
T PRK08588 2 EEKIQILADIVKI-NSVND--NEIEVANYLQDLFAKHGI------ESKIVK--VN------------------DGRANLV 52 (377)
T ss_pred hHHHHHHHHHhcC-CCCCC--cHHHHHHHHHHHHHHCCC------ceEEEe--cC------------------CCCceEE
Confidence 6788999999997 33333 346899999999999983 343321 10 0357999
Q ss_pred EEEcCCCCCCCCCCeEEEEeecCccCC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCccE
Q 002959 167 LRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAV 225 (862)
Q Consensus 167 ~~i~g~~~~~~~~~~Vll~AH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I 225 (862)
+++ |. . .+.|++.+|+|+||. ++|+.|++.|++++|++++.|.+.+..++.+|
T Consensus 53 a~~-g~----~-~~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i 126 (377)
T PRK08588 53 AEI-GS----G-SPVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNGTI 126 (377)
T ss_pred EEe-CC----C-CceEEEEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCCCCCcE
Confidence 988 42 1 268999999999985 37899999999999999999998877888999
Q ss_pred EEEEeCCcCCCCcchHHHHhcCCccCCccEEEEeec
Q 002959 226 IFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEA 261 (862)
Q Consensus 226 ~Flf~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD~ 261 (862)
.|+|..+||.|..|++.++++ ...++..+++..|.
T Consensus 127 ~l~~~~dEE~g~~G~~~~~~~-~~~~~~d~~i~~ep 161 (377)
T PRK08588 127 RLLATAGEEVGELGAKQLTEK-GYADDLDALIIGEP 161 (377)
T ss_pred EEEEEcccccCchhHHHHHhc-CccCCCCEEEEecC
Confidence 999999999999999999954 34445666666664
No 23
>PRK07906 hypothetical protein; Provisional
Probab=99.29 E-value=2.6e-11 Score=138.97 Aligned_cols=130 Identities=25% Similarity=0.370 Sum_probs=101.3
Q ss_pred HHHHHHHHccCCCCCC---CHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEE
Q 002959 90 MKHVKALTQLGPHAVG---SDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIV 166 (862)
Q Consensus 90 ~~~L~~L~~igpr~~G---S~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NVi 166 (862)
.+.|++|++|.....+ .+++.++++||.++++++|. +++.+. .. .+..|++
T Consensus 2 ~~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G~------~~~~~~--~~------------------~~~~nv~ 55 (426)
T PRK07906 2 VDLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGL------EPTYLE--SA------------------PGRANVV 55 (426)
T ss_pred hHHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCCC------CeEEee--cC------------------CCceEEE
Confidence 4678899987432211 24567899999999999983 344321 10 1457999
Q ss_pred EEEcCCCCCCCCCCeEEEEeecCccCC--------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCccEE
Q 002959 167 LRILPKYASEAGENAILVSSHIDTVSA--------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVI 226 (862)
Q Consensus 167 ~~i~g~~~~~~~~~~Vll~AH~Dsv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~ 226 (862)
++++|+ .+..+.|++++|+|+||. ++|+.||++|++++|++++.|++.+..++++|.
T Consensus 56 ~~~~g~---~~~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~ 132 (426)
T PRK07906 56 ARLPGA---DPSRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPRDLV 132 (426)
T ss_pred EEEeCC---CCCCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEE
Confidence 999774 234468999999999985 389999999999999999999998888899999
Q ss_pred EEEeCCcCCCC-cchHHHHhcCC
Q 002959 227 FLFNTGEEEGL-NGAHSFVTQHP 248 (862)
Q Consensus 227 Flf~~aEE~gl-~GS~~fv~~h~ 248 (862)
|+|+.+||.|. .|++.++++++
T Consensus 133 ~~~~~dEE~g~~~g~~~l~~~~~ 155 (426)
T PRK07906 133 FAFVADEEAGGTYGAHWLVDNHP 155 (426)
T ss_pred EEEecCcccchhhhHHHHHHHHH
Confidence 99999999965 69999986553
No 24
>PRK07338 hypothetical protein; Provisional
Probab=99.28 E-value=6.4e-11 Score=134.59 Aligned_cols=157 Identities=19% Similarity=0.227 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHccCCCCCCC-HHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccce
Q 002959 86 ELEAMKHVKALTQLGPHAVGS-DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNH 164 (862)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS-~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~N 164 (862)
.++..+.|++|+++. -..+. ++..++.+||.++|+++|. ++++.. .. +. ... ...+....+....|
T Consensus 16 ~~~~~~~l~~lv~i~-S~s~~~~~~~~~~~~l~~~l~~~G~------~~~~~~--~~-~~-~~~--~~~~~~~~~~~~~n 82 (402)
T PRK07338 16 QAPMLEQLIAWAAIN-SGSRNLDGLARMAELLADAFAALPG------EIELIP--LP-PV-EVI--DADGRTLEQAHGPA 82 (402)
T ss_pred HHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHhCCC------cEEEec--CC-cc-ccc--cccccccccCcCCe
Confidence 467788999999873 22223 2346789999999999983 333321 00 00 000 00001001124579
Q ss_pred EEEEEcCCCCCCCCCCeEEEEeecCccCC-----------------CCCCCCChhHHHHHHHHHHHHHhccCCCCccEEE
Q 002959 165 IVLRILPKYASEAGENAILVSSHIDTVSA-----------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIF 227 (862)
Q Consensus 165 Vi~~i~g~~~~~~~~~~Vll~AH~Dsv~~-----------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~F 227 (862)
++++++|. .++.|+|++|+|+||. ++|+.|+|+|++++|++++.|.+.+.+++.+|.|
T Consensus 83 l~a~~~~~-----~~~~lll~gH~DvVp~~~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~i~~ 157 (402)
T PRK07338 83 LHVSVRPE-----APRQVLLTGHMDTVFPADHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLGYDV 157 (402)
T ss_pred EEEEECCC-----CCccEEEEeecCccCCCCCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCCEEE
Confidence 99999653 2246999999999974 3799999999999999999998877677789999
Q ss_pred EEeCCcCCCCcchHHHHhcCCccCCccEEEEeecC
Q 002959 228 LFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAM 262 (862)
Q Consensus 228 lf~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD~~ 262 (862)
+|..+||.|..|++.+++++.. +..+.+.+|..
T Consensus 158 ~~~~dEE~g~~g~~~~~~~~~~--~~~~~i~~ep~ 190 (402)
T PRK07338 158 LINPDEEIGSPASAPLLAELAR--GKHAALTYEPA 190 (402)
T ss_pred EEECCcccCChhhHHHHHHHhc--cCcEEEEecCC
Confidence 9999999999999999976542 34667777754
No 25
>PRK07907 hypothetical protein; Provisional
Probab=99.27 E-value=7e-11 Score=136.55 Aligned_cols=145 Identities=18% Similarity=0.224 Sum_probs=109.1
Q ss_pred CHHHHHHHHHHHHccCCCCCCC----HHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcccccc
Q 002959 85 SELEAMKHVKALTQLGPHAVGS----DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYS 160 (862)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS----~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~ 160 (862)
..+++.+.|++|.+|.. +.+. .+..++.+||.++|+++|. .+++.. .. .
T Consensus 16 ~~~~~~~ll~~LV~ipS-~s~~~~~~~~~~~~~~~l~~~l~~~g~-----~~~~~~--~~-------------------~ 68 (449)
T PRK07907 16 LLPRVRADLEELVRIPS-VAADPFRREEVARSAEWVADLLREAGF-----DDVRVV--SA-------------------D 68 (449)
T ss_pred HHHHHHHHHHHHhcCCC-CCCCccchhhHHHHHHHHHHHHHHcCC-----ceEEEE--ec-------------------C
Confidence 35678899999999743 2221 2235889999999999972 023321 10 1
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEEeecCccCC---------------------CCCCCCChhHHHHHHHHHHHHHhccC
Q 002959 161 DLNHIVLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAH 219 (862)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~ 219 (862)
...|++++++|+ .+.+.|++++|+|+||. ++|+.|+++|+|++|.+++.| . .
T Consensus 69 ~~~nl~a~~~~~----~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l-~--~ 141 (449)
T PRK07907 69 GAPAVIGTRPAP----PGAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL-G--G 141 (449)
T ss_pred CCCEEEEEecCC----CCCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh-c--c
Confidence 457999999763 34578999999999985 379999999999999999999 3 4
Q ss_pred CCCccEEEEEeCCcCCCCcchHHHHhcCCccCCccEEEEeecCc
Q 002959 220 EFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMG 263 (862)
Q Consensus 220 ~p~~~I~Flf~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD~~G 263 (862)
+++++|.|++.++||.|..|++.+++++....+..++|..|..+
T Consensus 142 ~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~~~ 185 (449)
T PRK07907 142 DLPVGVTVFVEGEEEMGSPSLERLLAEHPDLLAADVIVIADSGN 185 (449)
T ss_pred CCCCcEEEEEEcCcccCCccHHHHHHhchHhhcCCEEEEecCCc
Confidence 56789999999999999999999997654433456777777543
No 26
>PRK09104 hypothetical protein; Validated
Probab=99.27 E-value=1e-10 Score=135.70 Aligned_cols=146 Identities=16% Similarity=0.174 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHHHccCCCCCCCH----HHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcccccc
Q 002959 85 SELEAMKHVKALTQLGPHAVGSD----ALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYS 160 (862)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS~----~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~ 160 (862)
..+++.+.|++|++|..- .+.+ +..++.+||.++|+++| +++++. ...
T Consensus 15 ~~~~~~~~L~~lv~i~Sv-s~~~~~~~~~~~~~~~l~~~l~~~G------~~v~~~--~~~------------------- 66 (464)
T PRK09104 15 NLDASLERLFALLRIPSI-STDPAYAADCRKAADWLVADLASLG------FEASVR--DTP------------------- 66 (464)
T ss_pred hHHHHHHHHHHHhcCCCC-CCCccchHHHHHHHHHHHHHHHHCC------CeEEEE--ecC-------------------
Confidence 457888999999997432 2222 23578999999999998 334431 110
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEEeecCccCC--------------------------CCCCCCChhHHHHHHHHHHHH
Q 002959 161 DLNHIVLRILPKYASEAGENAILVSSHIDTVSA--------------------------GEGAGDCSSCVAVMLELARVM 214 (862)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~--------------------------spGA~Dd~sgva~~LE~ar~L 214 (862)
...||++++.|+ +...+.|++++|+|+||. ++|+.|||.|++++|++++.|
T Consensus 67 ~~~~l~a~~~g~---~~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l 143 (464)
T PRK09104 67 GHPMVVAHHEGP---TGDAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAW 143 (464)
T ss_pred CCCEEEEEecCC---CCCCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHH
Confidence 246999999763 234578999999999863 368999999999999999999
Q ss_pred HhccCCCCccEEEEEeCCcCCCCcchHHHHhcCCccCCccEEEEeec
Q 002959 215 SQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEA 261 (862)
Q Consensus 215 ~~~~~~p~~~I~Flf~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD~ 261 (862)
.+.+..++.+|.|+|.++||.|..|...++.+.....+..++|+.|.
T Consensus 144 ~~~~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~ 190 (464)
T PRK09104 144 KAVTGSLPVRVTILFEGEEESGSPSLVPFLEANAEELKADVALVCDT 190 (464)
T ss_pred HHhcCCCCCcEEEEEECccccCCccHHHHHHhhHHhcCCCEEEEeCC
Confidence 98766677899999999999999999999865433235678888883
No 27
>PRK06446 hypothetical protein; Provisional
Probab=99.26 E-value=6.4e-11 Score=136.39 Aligned_cols=138 Identities=13% Similarity=0.194 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHccCCCCCCCH-HHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceE
Q 002959 87 LEAMKHVKALTQLGPHAVGSD-ALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (862)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~-~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (862)
+++.+.|++|++|..- .+.. +..++.+||.+.|+++| ++++.+ .. .+..|+
T Consensus 2 ~~~~~~l~eLV~i~S~-s~~~~~~~~~a~~l~~~l~~~G------~~ve~~--~~-------------------~~~~~l 53 (436)
T PRK06446 2 DEELYTLIEFLKKPSI-SATGEGIEETANYLKDTMEKLG------IKANIE--RT-------------------KGHPVV 53 (436)
T ss_pred hhHHHHHHHHhCCCCC-CCCcHhHHHHHHHHHHHHHHCC------CeEEEE--ec-------------------CCCCEE
Confidence 4678899999998432 2322 23689999999999998 334432 11 035789
Q ss_pred EEEEcCCCCCCCCCCeEEEEeecCccCC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCcc
Q 002959 166 VLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNA 224 (862)
Q Consensus 166 i~~i~g~~~~~~~~~~Vll~AH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (862)
++++++ .+.+.|++++|+|+||. ++|+.|+|+|++++|.+++.+.+.+ .++.+
T Consensus 54 ia~~~~-----~~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~-~~~~~ 127 (436)
T PRK06446 54 YGEINV-----GAKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKH-KLNVN 127 (436)
T ss_pred EEEecC-----CCCCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcC-CCCCC
Confidence 999853 12468999999999874 3899999999999999999987654 56789
Q ss_pred EEEEEeCCcCCCCcchHHHHhcCCccCCccEEEE
Q 002959 225 VIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVD 258 (862)
Q Consensus 225 I~Flf~~aEE~gl~GS~~fv~~h~~~~~v~a~iN 258 (862)
|.|+|..+||.|..|++.++++++...+..++|.
T Consensus 128 i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~vi~ 161 (436)
T PRK06446 128 VKFLYEGEEEIGSPNLEDFIEKNKNKLKADSVIM 161 (436)
T ss_pred EEEEEEcccccCCHhHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999977653222345553
No 28
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=99.26 E-value=1.2e-10 Score=131.74 Aligned_cols=150 Identities=17% Similarity=0.188 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHccCCCCCCC---HHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccc
Q 002959 87 LEAMKHVKALTQLGPHAVGS---DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLN 163 (862)
Q Consensus 87 erA~~~L~~L~~igpr~~GS---~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~ 163 (862)
+++.+.|++|+++..- .+. .++.++++||.++|+++|.+ .++....... . .......
T Consensus 5 ~~~~~~l~~lv~i~s~-s~~~~~~~e~~~~~~l~~~l~~~G~~-----~~~~~~~~~~-----~---------~~~~~~~ 64 (400)
T PRK13983 5 DEMIELLSELIAIPAV-NPDFGGEGEKEKAEYLESLLKEYGFD-----EVERYDAPDP-----R---------VIEGVRP 64 (400)
T ss_pred HHHHHHHHHHhCcCCC-CCCCCCccHHHHHHHHHHHHHHcCCc-----eEEEEecCCc-----c---------cccCCCc
Confidence 5788999999997432 221 23568899999999999831 0322110000 0 0000258
Q ss_pred eEEEEEcCCCCCCCCCCeEEEEeecCccCC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCCC
Q 002959 164 HIVLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFK 222 (862)
Q Consensus 164 NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~ 222 (862)
|++++++|. .+.+.|++.+|+|+||. ++|+.|++.|++++|++++.|.+.+.+++
T Consensus 65 nl~~~~~g~----~~~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~~ 140 (400)
T PRK13983 65 NIVAKIPGG----DGKRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRPK 140 (400)
T ss_pred cEEEEecCC----CCCCeEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCCCC
Confidence 999999873 23458999999999985 37899999999999999999998877889
Q ss_pred ccEEEEEeCCcCCCCc-chHHHHhcCCc-cCCccEEEEee
Q 002959 223 NAVIFLFNTGEEEGLN-GAHSFVTQHPW-STTIRVAVDLE 260 (862)
Q Consensus 223 ~~I~Flf~~aEE~gl~-GS~~fv~~h~~-~~~v~a~iNLD 260 (862)
++|.|+|..+||.|.. |++.++++++. .....+++..|
T Consensus 141 ~~v~~~~~~dEE~g~~~g~~~~~~~~~~~~~~~d~~i~~~ 180 (400)
T PRK13983 141 YNLGLAFVSDEETGSKYGIQYLLKKHPELFKKDDLILVPD 180 (400)
T ss_pred CcEEEEEEeccccCCcccHHHHHhhcccccCCCCEEEEec
Confidence 9999999999999884 89999866432 23345555544
No 29
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=99.26 E-value=8.4e-11 Score=133.65 Aligned_cols=147 Identities=17% Similarity=0.233 Sum_probs=110.8
Q ss_pred CCCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcccccccc
Q 002959 83 GFSELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDL 162 (862)
Q Consensus 83 ~fs~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~ 162 (862)
..-.+++.+.|++|++|... .++.+..++.+||.++|+++|. +++. ... +...
T Consensus 5 ~~~~~~~~~~l~~lv~ipS~-~~~~~~~~~~~~l~~~l~~~G~------~~~~--~~~------------------~~g~ 57 (400)
T TIGR01880 5 KWEEDIAVTRFREYLRINTV-QPNPDYAACVDFLIKQADELGL------ARKT--IEF------------------VPGK 57 (400)
T ss_pred ccchHHHHHHHHHHhccCcc-CCCccHHHHHHHHHHHHHhCCC------ceeE--EEe------------------cCCc
Confidence 46678899999999998433 2333346899999999999983 2322 110 0035
Q ss_pred ceEEEEEcCCCCCCCCCCeEEEEeecCccCC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCC
Q 002959 163 NHIVLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEF 221 (862)
Q Consensus 163 ~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p 221 (862)
.|++++++|+ ....+.|++.+|+|+||. ++|+.|+++|++++|++++.|.+.+.++
T Consensus 58 ~~l~~~~~g~---~~~~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~~ 134 (400)
T TIGR01880 58 PVVVLTWPGS---NPELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFKF 134 (400)
T ss_pred eeEEEEEecC---CCCCCeEEEEcccccCCCCcccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCCC
Confidence 6899999774 122368999999999984 3799999999999999999999987788
Q ss_pred CccEEEEEeCCcCCCC-cchHHHHhcCCccCCccEEEEee
Q 002959 222 KNAVIFLFNTGEEEGL-NGAHSFVTQHPWSTTIRVAVDLE 260 (862)
Q Consensus 222 ~~~I~Flf~~aEE~gl-~GS~~fv~~h~~~~~v~a~iNLD 260 (862)
+++|.|+|..+||.|. .|++.++++ ...+.+++.+.+|
T Consensus 135 ~~~v~l~~~~dEE~g~~~G~~~~~~~-~~~~~~~~~~~~d 173 (400)
T TIGR01880 135 KRTIHISFVPDEEIGGHDGMEKFAKT-DEFKALNLGFALD 173 (400)
T ss_pred CceEEEEEeCCcccCcHhHHHHHHHh-hhccCCceEEEEc
Confidence 8999999999999976 699999854 3223445556565
No 30
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.25 E-value=1.4e-10 Score=132.71 Aligned_cols=153 Identities=16% Similarity=0.121 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHccCCCCCCC-HHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccce
Q 002959 86 ELEAMKHVKALTQLGPHAVGS-DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNH 164 (862)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS-~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~N 164 (862)
.+++.+.|++|.++.. .... .++.++.+||.++|+++|. +++.+...... +. ..+....|
T Consensus 13 ~~~~~~~l~~Lv~i~S-~~~~g~~e~~~~~~l~~~l~~~G~------~~~~~~~~~~~-----------~~-~~~~~~~n 73 (427)
T PRK13013 13 RDDLVALTQDLIRIPT-LNPPGRAYREICEFLAARLAPRGF------EVELIRAEGAP-----------GD-SETYPRWN 73 (427)
T ss_pred HHHHHHHHHHHhcCCC-cCCCCccHHHHHHHHHHHHHHCCC------ceEEEecCCCC-----------cc-cccCCcce
Confidence 3677889999999732 2211 2335899999999999983 34332110000 00 01224679
Q ss_pred EEEEEcCCCCCCCCCCeEEEEeecCccCC-------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCccE
Q 002959 165 IVLRILPKYASEAGENAILVSSHIDTVSA-------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAV 225 (862)
Q Consensus 165 Vi~~i~g~~~~~~~~~~Vll~AH~Dsv~~-------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I 225 (862)
++++++|+ .+.+.|++.+|+|+||. ++|+.|+++|++++|.+++.|++.+.+++.+|
T Consensus 74 lia~~~g~----~~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~v 149 (427)
T PRK13013 74 LVARRQGA----RDGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGSI 149 (427)
T ss_pred EEEEecCC----CCCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhCCCCCccE
Confidence 99999774 23468999999999984 37999999999999999999998877788899
Q ss_pred EEEEeCCcCCCCc-chHHHHhcCCccC--CccEEEEeecC
Q 002959 226 IFLFNTGEEEGLN-GAHSFVTQHPWST--TIRVAVDLEAM 262 (862)
Q Consensus 226 ~Flf~~aEE~gl~-GS~~fv~~h~~~~--~v~a~iNLD~~ 262 (862)
+|+|..+||.|.. |.+.++ +....+ +..++|..|..
T Consensus 150 ~~~~~~dEE~g~~~g~~~l~-~~~~~~~~~~d~~i~~ep~ 188 (427)
T PRK13013 150 EISGTADEESGGFGGVAYLA-EQGRFSPDRVQHVIIPEPL 188 (427)
T ss_pred EEEEEeccccCChhHHHHHH-hcCCccccCCCEEEEecCC
Confidence 9999999999876 445555 333322 45677776643
No 31
>PRK08201 hypothetical protein; Provisional
Probab=99.24 E-value=1.1e-10 Score=135.23 Aligned_cols=148 Identities=18% Similarity=0.195 Sum_probs=109.7
Q ss_pred CHHHHHHHHHHHHccCCCCCCC---HHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccc
Q 002959 85 SELEAMKHVKALTQLGPHAVGS---DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSD 161 (862)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS---~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~ 161 (862)
..+++.+.|++|++|..-..++ .++.++.+||.++|+++|.+ .++++. . .+
T Consensus 12 ~~~~~~~~l~~LV~i~Svs~~~~~~~~~~~~a~~l~~~l~~~G~~-----~~~~~~--~-------------------~~ 65 (456)
T PRK08201 12 RREAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLE-----HVEIME--T-------------------AG 65 (456)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHcCCC-----eEEEEe--c-------------------CC
Confidence 3477889999999984432111 23457899999999999831 133321 0 03
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEEeecCccCC---------------------CCCCCCChhHHHHHHHHHHHHHhccCC
Q 002959 162 LNHIVLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHE 220 (862)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~ 220 (862)
..||++++.|. .+.+.|++++|+|+||. ++|+.|+|.|+|++|++++.|.+.+..
T Consensus 66 ~~~l~a~~~~~----~~~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~~ 141 (456)
T PRK08201 66 HPIVYADWLHA----PGKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVEGT 141 (456)
T ss_pred CCEEEEEecCC----CCCCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhcCC
Confidence 46899988653 33568999999999874 389999999999999999999876556
Q ss_pred CCccEEEEEeCCcCCCCcchHHHHhcCCccCCccEEEEeecC
Q 002959 221 FKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAM 262 (862)
Q Consensus 221 p~~~I~Flf~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD~~ 262 (862)
++++|.|++..+||.|..|+..+++++...-+..++|+.|..
T Consensus 142 ~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~ii~e~~ 183 (456)
T PRK08201 142 LPVNVKFCIEGEEEIGSPNLDSFVEEEKDKLAADVVLISDTT 183 (456)
T ss_pred CCCCEEEEEEcccccCCccHHHHHHhhHHhccCCEEEEeCCC
Confidence 778999999999999999999999765432234567777744
No 32
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=99.23 E-value=1.1e-09 Score=121.86 Aligned_cols=226 Identities=19% Similarity=0.265 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEE
Q 002959 87 LEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIV 166 (862)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NVi 166 (862)
+..++.|++|+.+ +-+.|.+ +++++|++++|++++. +++.| +..||+
T Consensus 2 ~~~~~~LkeL~~~-~gpsG~E--~eVr~~~~~el~~~~~------ev~~D------------------------~lGnli 48 (355)
T COG1363 2 EELLELLKELLEA-PGPSGYE--EEVRDVLKEELEPLGD------EVEVD------------------------RLGNLI 48 (355)
T ss_pred hHHHHHHHHHHcC-CCCCCcH--HHHHHHHHHHHHHhCC------ceEEc------------------------CCCcEE
Confidence 3567889999985 4455544 4589999999999973 34443 578999
Q ss_pred EEEcCCCCCCCCCCeEEEEeecCccCC----------------C------------------------------------
Q 002959 167 LRILPKYASEAGENAILVSSHIDTVSA----------------G------------------------------------ 194 (862)
Q Consensus 167 ~~i~g~~~~~~~~~~Vll~AH~Dsv~~----------------s------------------------------------ 194 (862)
++++|+ ...+.|++.||+|.+.. +
T Consensus 49 a~~~g~----~g~~~imi~AHmDEiG~mV~~I~~~G~Lr~~~IGG~~~~~~~gq~v~i~t~~g~~i~GvIg~~p~H~~~~ 124 (355)
T COG1363 49 AKKGGK----NGPPKVMIAAHMDEIGFMVKEIEDDGFLRFVPIGGWDPQVLEGQRVTIHTDKGKKIRGVIGSKPPHLLKE 124 (355)
T ss_pred EEecCC----CCCccEEEEeecceeeeeEEEECCCceEEEEEcCCcChhhccCcEEEEEeCCCcEEeeeEcccCccccCc
Confidence 999883 23455999999999863 0
Q ss_pred -------------------------------CC--------------------CCCChhHHHHHHHHHHHHHhccCCCCc
Q 002959 195 -------------------------------EG--------------------AGDCSSCVAVMLELARVMSQWAHEFKN 223 (862)
Q Consensus 195 -------------------------------pG--------------------A~Dd~sgva~~LE~ar~L~~~~~~p~~ 223 (862)
+| |-||..||+++||++|.| + +..++.
T Consensus 125 ~~~~~~~~~~~el~iDiga~skeea~~lGI~vGd~v~~~~~~~~l~~~~i~skalDdR~gva~lle~lk~l-~-~~~~~~ 202 (355)
T COG1363 125 EAERKKPPEWDELFIDIGASSKEEAEELGIRVGDFVVFDPRFRELANGRVVSKALDDRAGVAALLELLKEL-K-GIELPA 202 (355)
T ss_pred cccccCCCchhhEEEECCcCCHHHHHhcCCCCCCEEEEcCceEEecCCcEEeeeccchHhHHHHHHHHHHh-c-cCCCCc
Confidence 12 889999999999999999 4 578899
Q ss_pred cEEEEEeCCcCCCCcchHHHHhcCCccCCccEEEEeecCcCCCC--------------eeEEE-e-CC-CHHHHHHHHHH
Q 002959 224 AVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGGR--------------SALFQ-A-GP-NLWAVENFAAV 286 (862)
Q Consensus 224 ~I~Flf~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD~~G~gG~--------------~~lfq-~-g~-~~~li~~~~~~ 286 (862)
+++|+|+.-||.|+.||+....+ -+-..+|.+|..+.+.. .+.+. . +. ++.+.+...+.
T Consensus 203 ~vy~v~tvqEEVGlrGA~~~a~~----i~pd~aiavd~~~~~d~~~~~~~~~~lg~Gp~i~~~D~~~~~~~~l~~~L~~~ 278 (355)
T COG1363 203 DVYFVASVQEEVGLRGAKTSAFR----IKPDIAIAVDVTPAGDTPGVPKGDVKLGKGPVIRVKDASGIYHPKLRKFLLEL 278 (355)
T ss_pred eEEEEEecchhhccchhhccccc----cCCCEEEEEecccccCCCCCcccccccCCCCEEEEEcCCCCCCHHHHHHHHHH
Confidence 99999999999999999987632 23456777777766433 22233 2 23 67777766655
Q ss_pred ccCCCCcccccccccCCCCCCCCchHHHhhh-cCCeEEEEeecCCCCCCCCcCCccCCCChhHHHHHHHHHHHHHHHHhc
Q 002959 287 AKYPSGQIIGQDLFASGVFETATDFQVYTEV-AGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTAS 365 (862)
Q Consensus 287 a~~p~~~~l~~eif~~g~ips~TD~~~F~~~-~GIPgld~a~~~~~~~YHT~~Dt~d~Id~~sLq~~g~~~l~ll~~La~ 365 (862)
|+. .+-.+-.+++.. .+||-..+... .|+|...++.... +-|+++ +.++.+.+.++.+.+.+++..+..
T Consensus 279 A~~-~~Ip~Q~~v~~~----ggTDA~a~~~~g~gvpta~Igip~r--y~Hs~~---e~~~~~D~~~~~~Ll~~~i~~~~~ 348 (355)
T COG1363 279 AEK-NNIPYQVDVSPG----GGTDAGAAHLTGGGVPTALIGIPTR--YIHSPV---EVAHLDDLEATVKLLVAYLESLDR 348 (355)
T ss_pred HHH-cCCCeEEEecCC----CCccHHHHHHcCCCCceEEEecccc--cccCcc---eeecHHHHHHHHHHHHHHHHhcch
Confidence 432 111111233321 57898887652 5799987765422 257754 566777787777777777666543
No 33
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=99.22 E-value=2.4e-10 Score=121.12 Aligned_cols=167 Identities=21% Similarity=0.309 Sum_probs=115.1
Q ss_pred CeEEEEeecCccC----CCCCCCCChhHHHHHHHHHHHHHhc---cCCCCccEEEEEeCCcCCCCcchHHHHhcC-----
Q 002959 180 NAILVSSHIDTVS----AGEGAGDCSSCVAVMLELARVMSQW---AHEFKNAVIFLFNTGEEEGLNGAHSFVTQH----- 247 (862)
Q Consensus 180 ~~Vll~AH~Dsv~----~spGA~Dd~sgva~~LE~ar~L~~~---~~~p~~~I~Flf~~aEE~gl~GS~~fv~~h----- 247 (862)
|.|++.|++|+.. .+|||.++.+|++++|++++.|.+. ....+++|+|+|++||..|..||+.|+.+.
T Consensus 1 ~iIlv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiGS~R~vyDm~~~~f 80 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIGSSRFVYDMQNGNF 80 (234)
T ss_pred CEEEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccchHHHHHHHHcCcC
Confidence 4799999999964 4799999999999999999999874 235789999999999999999999998642
Q ss_pred C--------c-cCCccEEEEeecCcCCCCeeEEE-e-CC--C---HHHHHHHHHHccCCCCc--ccccccccCCCCCCCC
Q 002959 248 P--------W-STTIRVAVDLEAMGIGGRSALFQ-A-GP--N---LWAVENFAAVAKYPSGQ--IIGQDLFASGVFETAT 309 (862)
Q Consensus 248 ~--------~-~~~v~a~iNLD~~G~gG~~~lfq-~-g~--~---~~li~~~~~~a~~p~~~--~l~~eif~~g~ips~T 309 (862)
+ . .+++..+|.++.+|..+...++. + +. + ....+.+.+..+.+... ...+..-....+|..+
T Consensus 81 ~~~~~~~~~i~~~~I~~~IElgqvg~~~~~~l~~Hvd~~~~~~~~~~~~~~l~~~~~s~~~~~~~~~~~~~~~~~LPPsS 160 (234)
T PF05450_consen 81 PSDSLQFQPISLDNIDSVIELGQVGLSNSSGLYAHVDSPSNSSVANQVDEALDAAAKSLASSNIVIKKASSSNPPLPPSS 160 (234)
T ss_pred cccccccccccHHHCCEEEEeeccCCCCCCCEEEEecCCccchhhHHHHHHHHHHHHhccccccceeccccCCCCCCcch
Confidence 2 1 15899999999999866522332 1 21 1 12333333332222211 1111111122466666
Q ss_pred chHHHhhhcCCeEEEEeecCC---CCCCCCcCCccCCCCh
Q 002959 310 DFQVYTEVAGLSGLDFAYTDK---SAVYHTKNDRLDLLKP 346 (862)
Q Consensus 310 D~~~F~~~~GIPgld~a~~~~---~~~YHT~~Dt~d~Id~ 346 (862)
=++..++..++||+-++-.+. ..+||+.+|+.++|+.
T Consensus 161 ~~sFLr~~~~i~~vVLtd~~~~f~N~~y~S~~D~~~ni~~ 200 (234)
T PF05450_consen 161 LQSFLRKDPNIPGVVLTDHDSQFTNKYYNSILDDAENINF 200 (234)
T ss_pred HHHHHccCCCCCEEEecCCCcccccCCccCcccChhhhcC
Confidence 444444434899999886544 3469999999998876
No 34
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=99.20 E-value=5.5e-10 Score=123.14 Aligned_cols=239 Identities=21% Similarity=0.223 Sum_probs=132.0
Q ss_pred CCCHHHHHHHHHHHHc----cCCCCCCCHHH-H--HHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCc
Q 002959 83 GFSELEAMKHVKALTQ----LGPHAVGSDAL-D--RALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGK 155 (862)
Q Consensus 83 ~fs~erA~~~L~~L~~----igpr~~GS~~n-~--~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~ 155 (862)
..+-++..+||..+-+ |..|+..-..+ - .+. ++++++.. .+++|.+|..... |
T Consensus 56 ~lsl~eL~~Hl~tlp~~PdaIPY~TsYY~~~WGFCl~~----~~~~~L~d---g~Y~V~IdS~l~~-G------------ 115 (386)
T PF09940_consen 56 TLSLEELKKHLHTLPDQPDAIPYRTSYYKRRWGFCLSH----NQLDALPD---GEYEVVIDSTLED-G------------ 115 (386)
T ss_dssp EEEHHHHGGGEE--TTSTT--B--B-SSS----EE--H----HHHHT--S---SEEEEEEEEEEES--------------
T ss_pred EEeHHHHHhhhccCCCCCCccceeeecccCCcccccCH----HHHhhCCC---CceEEEEeeeecC-C------------
Confidence 4677788888877765 22233221111 1 111 33444432 3467777753321 1
Q ss_pred cccccccceEEEEEcCCCCCCCCCCeEEEEeecCccCCCCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCC
Q 002959 156 TLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEE 235 (862)
Q Consensus 156 ~~~Y~~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~ 235 (862)
...|. -..++|+ +++.|++++|.+|-. -|+||.||++++.+++|.|++. +.+.+..|+|-.
T Consensus 116 ~L~yg-----E~~ipG~-----s~~EillsthiCHPs---mANdnLSG~~v~~~La~~L~~~--~~rytYRflf~P---- 176 (386)
T PF09940_consen 116 SLTYG-----EFVIPGE-----SDEEILLSTHICHPS---MANDNLSGPAVLTFLAKWLKQL--PNRYTYRFLFVP---- 176 (386)
T ss_dssp EEEEE-----EEEE--S-----SS-EEEEEEE----S----TTTTHHHHHHHHHHHHHHTTS----SSEEEEEEE-----
T ss_pred ceeEE-----EEEecCC-----CCCeEEEEEeccCcc---cccccccHHHHHHHHHHHHhcC--CcCceEEEEEcc----
Confidence 12222 2345773 567899999999965 6999999999999999999984 456999999998
Q ss_pred CCcchHHHHhcCCcc--CCccEEEEeecCcCCCCeeEEEeCCCHHHHHHHH-HHccCCCCcccccccccCCCCCCCCchH
Q 002959 236 GLNGAHSFVTQHPWS--TTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFA-AVAKYPSGQIIGQDLFASGVFETATDFQ 312 (862)
Q Consensus 236 gl~GS~~fv~~h~~~--~~v~a~iNLD~~G~gG~~~lfq~g~~~~li~~~~-~~a~~p~~~~l~~eif~~g~ips~TD~~ 312 (862)
+..||-.|+.+|... +++++.++|.++|..|.-...++.-...+++... .+.++-... ...+ ...|.++|.+
T Consensus 177 eTIGsI~yLskn~~~l~~~v~~G~vLtcvGD~~~~syk~Sr~g~~~iDr~~~~vl~~~~~~---~~~~--~F~~~GsDER 251 (386)
T PF09940_consen 177 ETIGSITYLSKNLDELKKNVKAGLVLTCVGDDGAYSYKRSRRGNTLIDRAAAHVLKHSGPN---FKIY--DFLPRGSDER 251 (386)
T ss_dssp TTHHHHHHHHH-GGGGGG-EEEEEE--S--SSS-EEEE--TTSSSHHHHHHHHHHHHSSS----EEEE-----S-SSTHH
T ss_pred ccHHHHHHHHHCHHHHhhheeeeEEEEEecCCCCcceecCCCCCcHHHHHHHHHHHhcCCC---ceEe--cccccCCCcc
Confidence 589999999988653 4599999999999987654444322334444332 222221111 1111 1356789999
Q ss_pred HHhhhcC--CeEEEEee--cCCCCCCCCcCCccCCCChhHHHHHHHHHHHHHHHHhcC
Q 002959 313 VYTEVAG--LSGLDFAY--TDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASS 366 (862)
Q Consensus 313 ~F~~~~G--IPgld~a~--~~~~~~YHT~~Dt~d~Id~~sLq~~g~~~l~ll~~La~~ 366 (862)
+|.. -| +|-..+.= .+..+-|||..|+++.|+++.|+..-+.+..++..|-+.
T Consensus 252 QfcS-PG~dLPv~~~~Rs~yg~ypEYHTS~Dnl~fi~p~~L~~s~~~~~~~i~~lE~n 308 (386)
T PF09940_consen 252 QFCS-PGFDLPVGSLMRSKYGEYPEYHTSLDNLDFISPEGLEGSFEVLLEAIEILENN 308 (386)
T ss_dssp HHTS-TTT---EEEEESS-TT--TTTTBTTSSGGG--HHHHHHHHHHHHHHHHHHHH-
T ss_pred eeec-CCcCCceeeeecccccCCcccccCCCccccCCHHHHHHHHHHHHHHHHHHhcC
Confidence 9987 33 55444432 234568999999999999999999888888888777665
No 35
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.20 E-value=1.7e-10 Score=134.43 Aligned_cols=137 Identities=17% Similarity=0.310 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceE
Q 002959 86 ELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (862)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (862)
.+|+++.|++|+++ +++ |..++++++||.++++++| ++++.+ ...|+
T Consensus 3 ~~~~~~~l~~l~~i-~s~--s~~e~~~~~~l~~~l~~~G------~~~~~~------------------------~~~n~ 49 (477)
T TIGR01893 3 PSRVFKYFEEISKI-PRP--SKNEKEVSNFIVNWAKKLG------LEVKQD------------------------EVGNV 49 (477)
T ss_pred HHHHHHHHHHHHcC-CCC--CccHHHHHHHHHHHHHHcC------CeEEEe------------------------CCCeE
Confidence 47899999999998 455 5556789999999999998 344442 34699
Q ss_pred EEEEcCCCCCCCCCCeEEEEeecCccCC------------------------CCCCC---CChhHHHHHHHHHHHHHhcc
Q 002959 166 VLRILPKYASEAGENAILVSSHIDTVSA------------------------GEGAG---DCSSCVAVMLELARVMSQWA 218 (862)
Q Consensus 166 i~~i~g~~~~~~~~~~Vll~AH~Dsv~~------------------------spGA~---Dd~sgva~~LE~ar~L~~~~ 218 (862)
+++++|.. +..+.+.|++++|+|+||. ++|+. |++.|++++|++++. .
T Consensus 50 ~~~~~~~~-g~~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~---~- 124 (477)
T TIGR01893 50 LIRKPATP-GYENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED---N- 124 (477)
T ss_pred EEEEcCCC-CCCCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc---C-
Confidence 99998742 1134578999999999984 25664 999999999999875 2
Q ss_pred CCCCccEEEEEeCCcCCCCcchHHHHhcCCccCCccEEEEeecCc
Q 002959 219 HEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMG 263 (862)
Q Consensus 219 ~~p~~~I~Flf~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD~~G 263 (862)
..++++|.++|+.+||.|+.||+.+..+. .....++|.|..+
T Consensus 125 ~~~~~~i~~~~~~dEE~g~~Gs~~l~~~~---~~~~~~~~~d~~~ 166 (477)
T TIGR01893 125 NLKHPPLELLFTVDEETGMDGALGLDENW---LSGKILINIDSEE 166 (477)
T ss_pred CCCCCCEEEEEEeccccCchhhhhcChhh---cCCcEEEEecCCC
Confidence 23567999999999999999999997422 2346788888543
No 36
>PRK05469 peptidase T; Provisional
Probab=99.20 E-value=2.5e-10 Score=130.25 Aligned_cols=127 Identities=14% Similarity=0.203 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHccCCCCCC------C-HHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccc
Q 002959 87 LEAMKHVKALTQLGPHAVG------S-DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIY 159 (862)
Q Consensus 87 erA~~~L~~L~~igpr~~G------S-~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y 159 (862)
+.+.+.|++|++|...... | .+.+++++||.++|+++|.+ .++++
T Consensus 2 ~~~~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~-----~~~~~----------------------- 53 (408)
T PRK05469 2 DKLLERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQ-----DVTLD----------------------- 53 (408)
T ss_pred chHHHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCC-----eEEEC-----------------------
Confidence 4567899999987443211 1 34578999999999999831 12322
Q ss_pred cccceEEEEEcCCCCCCCCCCeEEEEeecCccCC----------------------------------------------
Q 002959 160 SDLNHIVLRILPKYASEAGENAILVSSHIDTVSA---------------------------------------------- 193 (862)
Q Consensus 160 ~~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~---------------------------------------------- 193 (862)
...||+++++|+. .++.+.|++.+|+|+||.
T Consensus 54 -~~~~v~~~~~g~~--~~~~~~i~l~~H~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 130 (408)
T PRK05469 54 -ENGYVMATLPANV--DKDVPTIGFIAHMDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLIT 130 (408)
T ss_pred -CCeEEEEEecCCC--CCCCCeEEEEEeccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEE
Confidence 3458999997741 234588999999999964
Q ss_pred CCCC----CCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCCCCcchHHHHh
Q 002959 194 GEGA----GDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVT 245 (862)
Q Consensus 194 spGA----~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~fv~ 245 (862)
++|+ .|+++|+|+||.+++.|++.+..++.+|+|+|..+||.| .|++.++.
T Consensus 131 ~rG~~~lg~D~Kgglaa~l~a~~~l~~~~~~~~g~v~~~f~~dEE~g-~Ga~~~~~ 185 (408)
T PRK05469 131 TDGTTLLGADDKAGIAEIMTALEYLIAHPEIKHGDIRVAFTPDEEIG-RGADKFDV 185 (408)
T ss_pred cCCCEeecccchHHHHHHHHHHHHHHhCCCCCCCCEEEEEecccccC-CCHHHhhh
Confidence 2365 999999999999999998876567789999999999998 89998863
No 37
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=99.19 E-value=2.2e-10 Score=128.02 Aligned_cols=134 Identities=22% Similarity=0.249 Sum_probs=103.6
Q ss_pred CHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccce
Q 002959 85 SELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNH 164 (862)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~N 164 (862)
-++++.+.|++|.++.. + |..+.++.+|+.+.|+++|. +++.+ ...|
T Consensus 4 ~~~~~~~~l~~Lv~i~s-~--s~~e~~~~~~l~~~l~~~G~------~~~~~------------------------~~~n 50 (348)
T PRK04443 4 SALEARELLKGLVEIPS-P--SGEEAAAAEFLVEFMESHGR------EAWVD------------------------EAGN 50 (348)
T ss_pred chHHHHHHHHHHHcCCC-C--CCChHHHHHHHHHHHHHcCC------EEEEc------------------------CCCc
Confidence 45788999999999733 3 33456899999999999983 34331 2458
Q ss_pred EEEEEcCCCCCCCCCCeEEEEeecCccCC------------CCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCC
Q 002959 165 IVLRILPKYASEAGENAILVSSHIDTVSA------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTG 232 (862)
Q Consensus 165 Vi~~i~g~~~~~~~~~~Vll~AH~Dsv~~------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~a 232 (862)
+++++.+ ..+.|++++|+|+||. ++|+.|+++|++++|++++.| + .+++++|.|++..+
T Consensus 51 ~i~~~~~------~~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~Kg~~aa~l~A~~~l-~--~~~~~~i~~~~~~d 121 (348)
T PRK04443 51 ARGPAGD------GPPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDAKGPLAAFAAAAARL-E--ALVRARVSFVGAVE 121 (348)
T ss_pred EEEEcCC------CCCEEEEEeeccccCCCCCcEeeCCeEEeecccccccHHHHHHHHHHHh-c--ccCCCCEEEEEEcc
Confidence 8888732 1368999999999974 589999999999999999999 3 46788999999999
Q ss_pred cCCCCcchHHHHhcCCccCCccEEEEeecCc
Q 002959 233 EEEGLNGAHSFVTQHPWSTTIRVAVDLEAMG 263 (862)
Q Consensus 233 EE~gl~GS~~fv~~h~~~~~v~a~iNLD~~G 263 (862)
||.|..|...++.+.. ...++|+.|..+
T Consensus 122 EE~g~~~~~~~l~~~~---~~d~~iv~Ept~ 149 (348)
T PRK04443 122 EEAPSSGGARLVADRE---RPDAVIIGEPSG 149 (348)
T ss_pred cccCChhHHHHHHhcc---CCCEEEEeCCCC
Confidence 9999887777765432 456778777433
No 38
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.19 E-value=2.2e-10 Score=127.23 Aligned_cols=145 Identities=17% Similarity=0.199 Sum_probs=107.0
Q ss_pred HHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEEE
Q 002959 89 AMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLR 168 (862)
Q Consensus 89 A~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~ 168 (862)
....++++.+|.+-...++.....++|+..+.+.++... ..++.. + ...+++.+
T Consensus 27 ~v~~f~eylRi~Tv~p~~dy~~a~~~Fl~~~a~~l~l~~---~~i~~~----------------------p-~~~~~l~T 80 (420)
T KOG2275|consen 27 SVTRFREYLRIPTVQPNPDYTIACADFLKKYAKSLGLTV---QKIESE----------------------P-GKYVLLYT 80 (420)
T ss_pred HHHHHHHHhhccccccCCCccHHHHHHHHHHHHhcCCce---eEEEec----------------------C-ceeEEEEE
Confidence 344555555553321122222267999999999887421 111110 1 36788999
Q ss_pred EcCCCCCCCCCCeEEEEeecCccCC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCccEEE
Q 002959 169 ILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIF 227 (862)
Q Consensus 169 i~g~~~~~~~~~~Vll~AH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~F 227 (862)
++|+ ++..+.|||++|.|+||+ ++||.|+++-++++||++|.|..+|.+|+|+|.+
T Consensus 81 ~~GS---~P~L~silL~SH~DVVP~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp~Rti~l 157 (420)
T KOG2275|consen 81 WLGS---DPELPSILLNSHTDVVPVFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKPKRTIHL 157 (420)
T ss_pred eeCC---CCCccceeeeccccccCCCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCcCceEEE
Confidence 9996 567899999999999986 4899999999999999999999999999999999
Q ss_pred EEeCCcCCC-CcchHHHHhcCCccCCccEEEEeecCc
Q 002959 228 LFNTGEEEG-LNGAHSFVTQHPWSTTIRVAVDLEAMG 263 (862)
Q Consensus 228 lf~~aEE~g-l~GS~~fv~~h~~~~~v~a~iNLD~~G 263 (862)
.|..+||.| ..|++.|+. +...++....+.||=.|
T Consensus 158 sfvpDEEi~G~~Gm~~fa~-~~~~~~l~~~filDEG~ 193 (420)
T KOG2275|consen 158 SFVPDEEIGGHIGMKEFAK-TEEFKKLNLGFILDEGG 193 (420)
T ss_pred EecCchhccCcchHHHHhh-hhhhcccceeEEecCCC
Confidence 999999987 689999994 55445555666666444
No 39
>PRK07079 hypothetical protein; Provisional
Probab=99.18 E-value=3e-10 Score=132.09 Aligned_cols=149 Identities=14% Similarity=0.147 Sum_probs=106.0
Q ss_pred CCHHHHHHHHHHHHccCCCCCCCH-HHHHHHHHHH----HHHHhcccccCCcceEEEEEEeccCCCcccccccccCcccc
Q 002959 84 FSELEAMKHVKALTQLGPHAVGSD-ALDRALQYVL----AASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLI 158 (862)
Q Consensus 84 fs~erA~~~L~~L~~igpr~~GS~-~n~~a~~yL~----~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~ 158 (862)
++++++.+.|++|++|.. ..+.+ ++...++|+. +.|+++| ++++. .... .
T Consensus 14 ~~~~~~~~~L~~LV~ipS-vs~~~~~~~~~~~~l~~~~~~~l~~~G------~~~~~--~~~~----------------~ 68 (469)
T PRK07079 14 FDSGAFFADLARRVAYRT-ESQNPDRAPALRAYLTDEIAPALAALG------FTCRI--VDNP----------------V 68 (469)
T ss_pred hccHHHHHHHHHHhccCC-CCCCcccHHHHHHHHHHHHHHHHHHCC------CeEEE--EecC----------------C
Confidence 455688999999999843 33322 2335566654 4677666 23333 1110 0
Q ss_pred ccccceEEEEEcCCCCCCCCCCeEEEEeecCccCC----------------------CCCCCCChhHHHHHHHHHHHHHh
Q 002959 159 YSDLNHIVLRILPKYASEAGENAILVSSHIDTVSA----------------------GEGAGDCSSCVAVMLELARVMSQ 216 (862)
Q Consensus 159 Y~~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~----------------------spGA~Dd~sgva~~LE~ar~L~~ 216 (862)
..+..||++++.|. .+.+.|+|++|+|+||. ++|+.|+|+|++++|.+++.|.+
T Consensus 69 ~~~~~~vva~~~~~----~~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~ 144 (469)
T PRK07079 69 AGGGPFLIAERIED----DALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLA 144 (469)
T ss_pred CCCCCEEEEEeCCC----CCCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHH
Confidence 01457999998552 33478999999999973 38999999999999999999876
Q ss_pred c-cCCCCccEEEEEeCCcCCCCcchHHHHhcCCccCCccEEEEeec
Q 002959 217 W-AHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEA 261 (862)
Q Consensus 217 ~-~~~p~~~I~Flf~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD~ 261 (862)
. +.+++++|+|++..+||.|..|++.++++++...+..++|+.|.
T Consensus 145 ~~~~~~~~~i~~~~~~dEE~g~~G~~~l~~~~~~~~~~d~~iv~e~ 190 (469)
T PRK07079 145 ARGGRLGFNVKLLIEMGEEIGSPGLAEVCRQHREALAADVLIASDG 190 (469)
T ss_pred hcCCCCCCCEEEEEECccccCCccHHHHHHHhHHhcCCCEEEEeCC
Confidence 4 46788999999999999999999999987753223456666653
No 40
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=99.17 E-value=3.2e-10 Score=126.89 Aligned_cols=128 Identities=27% Similarity=0.302 Sum_probs=98.7
Q ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEE
Q 002959 88 EAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVL 167 (862)
Q Consensus 88 rA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~ 167 (862)
|.++.|++|.++.. .|..+.++.+||.++|+++|. +++.+. .. + .+.+..|+++
T Consensus 1 ~~~~~~~~l~~i~s---~s~~e~~~~~~l~~~l~~~g~------~~~~~~--~~-~--------------~~~~~~~~~~ 54 (361)
T TIGR01883 1 RLKKYFLELIQIDS---ESGKEKAILTYLKKQITKLGI------PVSLDE--VP-A--------------EVSNDNNLIA 54 (361)
T ss_pred ChHHHHHHHeecCC---CCCcHHHHHHHHHHHHHHcCC------EEEEec--cc-c--------------ccCCCceEEE
Confidence 46788999998732 234456899999999999982 333321 00 0 0114689999
Q ss_pred EEcCCCCCCCCCCeEEEEeecCccCC--------------CCCC----CCChhHHHHHHHHHHHHHhccCCCCccEEEEE
Q 002959 168 RILPKYASEAGENAILVSSHIDTVSA--------------GEGA----GDCSSCVAVMLELARVMSQWAHEFKNAVIFLF 229 (862)
Q Consensus 168 ~i~g~~~~~~~~~~Vll~AH~Dsv~~--------------spGA----~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf 229 (862)
+++|+ .+.+.|++.+|+|+||. ++|+ .|+++|++++|++++.|.+.+ .++++|.|+|
T Consensus 55 ~~~g~----~~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~-~~~~~v~~~~ 129 (361)
T TIGR01883 55 RLPGT----VKFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE-TPHGTIEFIF 129 (361)
T ss_pred EEeCC----CCCCcEEEEeeccccCCCCCCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC-CCCCCEEEEE
Confidence 99874 23468999999999984 3677 899999999999999998865 5678999999
Q ss_pred eCCcCCCCcchHHHHhc
Q 002959 230 NTGEEEGLNGAHSFVTQ 246 (862)
Q Consensus 230 ~~aEE~gl~GS~~fv~~ 246 (862)
+.+||.|..|++.+..+
T Consensus 130 ~~~EE~g~~G~~~~~~~ 146 (361)
T TIGR01883 130 TVKEELGLIGMRLFDES 146 (361)
T ss_pred EcccccCchhHhHhChh
Confidence 99999999999998753
No 41
>PRK13381 peptidase T; Provisional
Probab=99.16 E-value=4.2e-10 Score=128.21 Aligned_cols=137 Identities=16% Similarity=0.288 Sum_probs=101.9
Q ss_pred HHHHHHHHHccCCCCC-------CCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccc
Q 002959 89 AMKHVKALTQLGPHAV-------GSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSD 161 (862)
Q Consensus 89 A~~~L~~L~~igpr~~-------GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~ 161 (862)
+.+.|.++.+|..... .+++++++++||.++|+++|.+ .+++| .
T Consensus 3 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~-----~~~~~------------------------~ 53 (404)
T PRK13381 3 LTDRFFRYLKVNSQSDAASGTLPSTPGQHELAKLLADELRELGLE-----DIVID------------------------E 53 (404)
T ss_pred HHHHhHhhEEEeccCCCCCCCCcCChhHHHHHHHHHHHHHHcCCC-----cEEEc------------------------C
Confidence 5678888888743221 2345678999999999999831 12221 3
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEEeecCccCCC----------------------------------------------C
Q 002959 162 LNHIVLRILPKYASEAGENAILVSSHIDTVSAG----------------------------------------------E 195 (862)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~s----------------------------------------------p 195 (862)
..||+++++|+. +..+.|++++|+|+||.. +
T Consensus 54 ~~nvi~~~~g~~---~~~~~lll~~H~D~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gr 130 (404)
T PRK13381 54 HAIVTAKLPGNT---PGAPRIGFIAHLDTVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSD 130 (404)
T ss_pred CeEEEEEEecCC---CCCCeEEEEEEecCCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCC
Confidence 469999998741 233789999999999743 4
Q ss_pred CC----CCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCCCCcchHHHHhcCCccCCccEEEEeec
Q 002959 196 GA----GDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEA 261 (862)
Q Consensus 196 GA----~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD~ 261 (862)
|+ .|+++|+|++|.+++.|.+.+ .++.+|.|+|..+||.|..|++.++.+. . .....+.+|.
T Consensus 131 G~~~~g~DmKgg~aa~l~a~~~l~~~~-~~~g~i~~~~~~dEE~g~~G~~~~~~~~-~--~~d~~~~~~~ 196 (404)
T PRK13381 131 GTSVLGADNKAAIAVVMTLLENLTENE-VEHGDIVVAFVPDEEIGLRGAKALDLAR-F--PVDFAYTIDC 196 (404)
T ss_pred CccccccccHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccccccHHHHHHhc-C--CCCEEEEecC
Confidence 77 999999999999999998764 4577999999999999999999997442 2 2344555553
No 42
>PRK06915 acetylornithine deacetylase; Validated
Probab=99.16 E-value=5.5e-10 Score=127.89 Aligned_cols=156 Identities=23% Similarity=0.250 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceE
Q 002959 86 ELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (862)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (862)
.+++.+.+++|.++ |-+ |.++.++.+||.++|+++|. ++++. ... +......-.+......+....||
T Consensus 16 ~~~~~~~l~~lv~i-ps~--s~~e~~~~~~l~~~l~~~G~------~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~nl 83 (422)
T PRK06915 16 EEEAVKLLKRLIQE-KSV--SGDESGAQAIVIEKLRELGL------DLDIW--EPS-FKKLKDHPYFVSPRTSFSDSPNI 83 (422)
T ss_pred HHHHHHHHHHHHhC-CCC--CcchHHHHHHHHHHHHhcCC------eeEEe--ecc-hhhhhcccccCCcccccCCCceE
Confidence 36788999999996 333 44456889999999999983 33321 110 00000000000000112246899
Q ss_pred EEEEcCCCCCCCCCCeEEEEeecCccCC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCcc
Q 002959 166 VLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNA 224 (862)
Q Consensus 166 i~~i~g~~~~~~~~~~Vll~AH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (862)
+++++|. .+.+.|++.+|+|+||. ++|+.|+++|++++|.+++.|++.+.+++.+
T Consensus 84 ia~~~g~----~~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~ 159 (422)
T PRK06915 84 VATLKGS----GGGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGIELKGD 159 (422)
T ss_pred EEEEcCC----CCCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCc
Confidence 9999874 23478999999999985 3899999999999999999999887778889
Q ss_pred EEEEEeCCcCCCCcchHHHHhcCCccCCccEEEEee
Q 002959 225 VIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLE 260 (862)
Q Consensus 225 I~Flf~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD 260 (862)
|.|+|..+||.|..|+...+.+. + +..+++.-|
T Consensus 160 v~~~~~~dEE~g~~G~~~~~~~~-~--~~d~~i~~e 192 (422)
T PRK06915 160 VIFQSVIEEESGGAGTLAAILRG-Y--KADGAIIPE 192 (422)
T ss_pred EEEEEecccccCCcchHHHHhcC-c--CCCEEEECC
Confidence 99999999999988998877432 2 345555554
No 43
>PRK07318 dipeptidase PepV; Reviewed
Probab=99.16 E-value=3.7e-10 Score=131.23 Aligned_cols=127 Identities=15% Similarity=0.215 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHccCCCCCC---------CHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcc
Q 002959 86 ELEAMKHVKALTQLGPHAVG---------SDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKT 156 (862)
Q Consensus 86 ~erA~~~L~~L~~igpr~~G---------S~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~ 156 (862)
.+++.+.|++|++|..-..+ -.++.++.+|+.+.++++|. +++.
T Consensus 13 ~~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G~------~~~~--------------------- 65 (466)
T PRK07318 13 KDDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDGF------KTKN--------------------- 65 (466)
T ss_pred HHHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCCC------EEEE---------------------
Confidence 46778899999998543222 12356899999999999872 2321
Q ss_pred ccccccceEEEEEcCCCCCCCCCCeEEEEeecCccCC-------------------CCCCCCChhHHHHHHHHHHHHHhc
Q 002959 157 LIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSA-------------------GEGAGDCSSCVAVMLELARVMSQW 217 (862)
Q Consensus 157 ~~Y~~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~-------------------spGA~Dd~sgva~~LE~ar~L~~~ 217 (862)
..|++++++.. ...+.|++.+|+|+||. ++|+.|++.|+++++.+++.|++.
T Consensus 66 -----~~n~~~~~~~~----~~~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~ 136 (466)
T PRK07318 66 -----VDNYAGHIEYG----EGEEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKEL 136 (466)
T ss_pred -----ecCccceEEEC----CCCCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHHc
Confidence 12555555431 22357999999999985 389999999999999999999998
Q ss_pred cCCCCccEEEEEeCCcCCCCcchHHHHhcCC
Q 002959 218 AHEFKNAVIFLFNTGEEEGLNGAHSFVTQHP 248 (862)
Q Consensus 218 ~~~p~~~I~Flf~~aEE~gl~GS~~fv~~h~ 248 (862)
+.+++++|.|+|..+||.|..|++.++++++
T Consensus 137 g~~~~~~i~l~~~~DEE~g~~G~~~l~~~~~ 167 (466)
T PRK07318 137 GLPLSKKVRFIVGTDEESGWKCMDYYFEHEE 167 (466)
T ss_pred CCCCCccEEEEEEcccccCchhHHHHHHhCC
Confidence 8888889999999999999999999997664
No 44
>PRK06837 acetylornithine deacetylase; Provisional
Probab=99.15 E-value=5.2e-10 Score=128.50 Aligned_cols=158 Identities=18% Similarity=0.138 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceE
Q 002959 86 ELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (862)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (862)
.+++.+.|++|.+|.. + |.++.++++||.++|+++|. +++....... ......+ .......+.+..||
T Consensus 19 ~~~~~~~l~~li~ipS-~--s~~e~~~~~~l~~~l~~~G~------~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~nl 86 (427)
T PRK06837 19 FDAQVAFTQDLVRFPS-T--RGAEAPCQDFLARAFRERGY------EVDRWSIDPD-DLKSHPG--AGPVEIDYSGAPNV 86 (427)
T ss_pred hHHHHHHHHHHhccCC-C--CCcHHHHHHHHHHHHHHCCC------ceEEecCCHH-Hhhhccc--ccccccccCCCceE
Confidence 4577888999998732 2 34456899999999999983 2322100000 0000000 00001122357899
Q ss_pred EEEEcCCCCCCCCCCeEEEEeecCccCC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCcc
Q 002959 166 VLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNA 224 (862)
Q Consensus 166 i~~i~g~~~~~~~~~~Vll~AH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (862)
+++++|+ .++.+.|++.+|+|+||. ++|+.|+++|++++|.+++.|++.+..++++
T Consensus 87 ~a~~~g~---~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~~~~~~ 163 (427)
T PRK06837 87 VGTYRPA---GKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGLAPAAR 163 (427)
T ss_pred EEEecCC---CCCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCc
Confidence 9999874 233578999999999986 3599999999999999999999888788999
Q ss_pred EEEEEeCCcCCCCcchHHHHhcCCccCCccEEEEeec
Q 002959 225 VIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEA 261 (862)
Q Consensus 225 I~Flf~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD~ 261 (862)
|.|+|+.+||.+..|+...+.+. . ...++|..|.
T Consensus 164 i~~~~~~dEE~~g~g~~~~~~~~-~--~~d~~iv~ep 197 (427)
T PRK06837 164 VHFQSVIEEESTGNGALSTLQRG-Y--RADACLIPEP 197 (427)
T ss_pred EEEEEEeccccCCHhHHHHHhcC-c--CCCEEEEcCC
Confidence 99999999998888987776432 1 2344554443
No 45
>PRK07522 acetylornithine deacetylase; Provisional
Probab=99.15 E-value=4.5e-10 Score=126.66 Aligned_cols=141 Identities=17% Similarity=0.214 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEE
Q 002959 87 LEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIV 166 (862)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NVi 166 (862)
..+.+.|++|++|. .+.+. ++.++.+||.++|+++|. +++.. ... .....||+
T Consensus 4 ~~~~~~l~~lv~i~-S~s~~-~~~~~~~~l~~~l~~~G~------~~~~~--~~~-----------------~~~~~nv~ 56 (385)
T PRK07522 4 MSSLDILERLVAFD-TVSRD-SNLALIEWVRDYLAAHGV------ESELI--PDP-----------------EGDKANLF 56 (385)
T ss_pred hhHHHHHHHHhCCC-CcCCC-ccHHHHHHHHHHHHHcCC------eEEEE--ecC-----------------CCCcccEE
Confidence 45788999999973 33332 224889999999999983 33331 110 01357999
Q ss_pred EEEcCCCCCCCCCCeEEEEeecCccCC--------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCccEE
Q 002959 167 LRILPKYASEAGENAILVSSHIDTVSA--------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVI 226 (862)
Q Consensus 167 ~~i~g~~~~~~~~~~Vll~AH~Dsv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~ 226 (862)
+++.++ ..+.|++.+|+|+||. ++|+.|+++++|++|++++.|.+. +++++|.
T Consensus 57 a~~~~~-----~~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~i~ 129 (385)
T PRK07522 57 ATIGPA-----DRGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAA--PLRRPLH 129 (385)
T ss_pred EEeCCC-----CCCeEEEEeecccccCCCCCCCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhC--CCCCCEE
Confidence 998542 2467999999999974 489999999999999999999875 4678999
Q ss_pred EEEeCCcCCCCcchHHHHhcCCc-cCCccEEEEeec
Q 002959 227 FLFNTGEEEGLNGAHSFVTQHPW-STTIRVAVDLEA 261 (862)
Q Consensus 227 Flf~~aEE~gl~GS~~fv~~h~~-~~~v~a~iNLD~ 261 (862)
|+|..+||.|..|++.++++... ..+..++|..|.
T Consensus 130 ~~~~~dEE~g~~G~~~l~~~~~~~~~~~d~~i~~ep 165 (385)
T PRK07522 130 LAFSYDEEVGCLGVPSMIARLPERGVKPAGCIVGEP 165 (385)
T ss_pred EEEEeccccCCccHHHHHHHhhhcCCCCCEEEEccC
Confidence 99999999998999999865332 123455665554
No 46
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.14 E-value=7.1e-10 Score=123.57 Aligned_cols=134 Identities=28% Similarity=0.311 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhc-ccccCCcceEEEEEEeccCCCcccccccccCccccccccce
Q 002959 86 ELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKI-KESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNH 164 (862)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~l-g~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~N 164 (862)
.+++.+.+++|.++ |.+ |..+.++.+||.++|+++ + ++++. ...|
T Consensus 6 ~~~~~~~l~~li~i-ps~--s~~e~~~~~~l~~~l~~~~~------~~~~~-------------------------~~~~ 51 (352)
T PRK13007 6 AADLAELTAALVDI-PSV--SGDEKALADAVEAALRALPH------LEVIR-------------------------HGNS 51 (352)
T ss_pred HHHHHHHHHHHhcC-CCC--CchHHHHHHHHHHHHHhCcC------ceEEe-------------------------cCCe
Confidence 36788999999996 444 344568899999999986 4 22221 1358
Q ss_pred EEEEEcCCCCCCCCCCeEEEEeecCccCC--------------CCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEe
Q 002959 165 IVLRILPKYASEAGENAILVSSHIDTVSA--------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFN 230 (862)
Q Consensus 165 Vi~~i~g~~~~~~~~~~Vll~AH~Dsv~~--------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~ 230 (862)
+++++.+. . .+.|++.+|+|+||. ++|+.|+++|+|++|.+++.|. +++++|.|+|.
T Consensus 52 ~~~~~~~~----~-~~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~----~~~~~i~~~~~ 122 (352)
T PRK13007 52 VVARTDLG----R-PSRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKSGLAVMLHLAATLA----EPAHDLTLVFY 122 (352)
T ss_pred EEEEccCC----C-CCeEEEEccccccCCCCCCCcceeCCEEEccCcccccHHHHHHHHHHHHhh----ccCCCeEEEEE
Confidence 99998432 1 236999999999985 4899999999999999999993 36789999999
Q ss_pred CCcCCCC--cchHHHHhcCCccCCccEEEEeecC
Q 002959 231 TGEEEGL--NGAHSFVTQHPWSTTIRVAVDLEAM 262 (862)
Q Consensus 231 ~aEE~gl--~GS~~fv~~h~~~~~v~a~iNLD~~ 262 (862)
++||.|. .|+..++.+++...+..++|+.|..
T Consensus 123 ~~EE~~~~~~G~~~~~~~~~~~~~~d~~i~~ep~ 156 (352)
T PRK13007 123 DCEEVEAEANGLGRLAREHPEWLAGDFAILLEPT 156 (352)
T ss_pred ecccccCCcccHHHHHHhcccccCCCEEEEecCC
Confidence 9999865 5888888666544567888888853
No 47
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=99.13 E-value=5.7e-10 Score=124.69 Aligned_cols=136 Identities=21% Similarity=0.246 Sum_probs=99.9
Q ss_pred HHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEEEEcC
Q 002959 92 HVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILP 171 (862)
Q Consensus 92 ~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~g 171 (862)
.|++|++|.. +.+. ++.++++||.++|+++| ++++.+. ...+ ....||++++.|
T Consensus 2 ~l~~lv~i~S-~s~~-~~~~~~~~l~~~l~~~G------~~~~~~~--~~~~----------------~~~~nl~~~~~~ 55 (364)
T TIGR01892 2 ILTKLVAFDS-TSFR-PNVDLIDWAQAYLEALG------FSVEVQP--FPDG----------------AEKSNLVAVIGP 55 (364)
T ss_pred hHHHhhCcCC-cCCc-cHHHHHHHHHHHHHHcC------CeEEEEe--CCCC----------------CccccEEEEecC
Confidence 5788888732 2232 23578999999999998 3344431 1100 036899999854
Q ss_pred CCCCCCCCCeEEEEeecCccCC--------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeC
Q 002959 172 KYASEAGENAILVSSHIDTVSA--------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNT 231 (862)
Q Consensus 172 ~~~~~~~~~~Vll~AH~Dsv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~ 231 (862)
+ +.+.|++.+|+|+||. ++|+.|+++|++++|.+++.|.+. +.+++|.|+|..
T Consensus 56 ~-----~~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~ 128 (364)
T TIGR01892 56 S-----GAGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAE--QLKKPLHLALTA 128 (364)
T ss_pred C-----CCCeEEEEcccccccCCCCcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhc--CcCCCEEEEEEe
Confidence 2 2357999999999974 389999999999999999999874 457899999999
Q ss_pred CcCCCCcchHHHHhcCCccCCccEEEEeecC
Q 002959 232 GEEEGLNGAHSFVTQHPWSTTIRVAVDLEAM 262 (862)
Q Consensus 232 aEE~gl~GS~~fv~~h~~~~~v~a~iNLD~~ 262 (862)
+||.|..|++.++++... +...++.-|..
T Consensus 129 ~EE~g~~G~~~~~~~~~~--~~d~~i~~ep~ 157 (364)
T TIGR01892 129 DEEVGCTGAPKMIEAGAG--RPRHAIIGEPT 157 (364)
T ss_pred ccccCCcCHHHHHHhcCC--CCCEEEECCCC
Confidence 999999999999966542 23345554543
No 48
>PRK07205 hypothetical protein; Provisional
Probab=99.12 E-value=7.5e-10 Score=127.85 Aligned_cols=127 Identities=18% Similarity=0.226 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHccCCCCCCC--------HHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcc
Q 002959 85 SELEAMKHVKALTQLGPHAVGS--------DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKT 156 (862)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS--------~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~ 156 (862)
+.+++.+.|++|++|..- .+. ++-.++.+|+.++++++|. +++++ .
T Consensus 9 ~~~~~~~~l~~lv~i~S~-s~~~~~~~~~~~~~~~~~~~~~~~l~~~g~------~~~~~----~--------------- 62 (444)
T PRK07205 9 VQDACVAAIKTLVSYPSV-LNEGENGTPFGQAIQDVLEATLDLCQGLGF------KTYLD----P--------------- 62 (444)
T ss_pred hHHHHHHHHHHHcccccc-cCCCcCCCCCchhHHHHHHHHHHHHHhCCC------EEEEc----C---------------
Confidence 567888999999997432 221 1225788899999999872 33332 0
Q ss_pred ccccccceEEEEEcCCCCCCCCCCeEEEEeecCccCC---------------------CCCCCCChhHHHHHHHHHHHHH
Q 002959 157 LIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMS 215 (862)
Q Consensus 157 ~~Y~~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~ 215 (862)
...|+++++ |. ..+.|+|.+|+|+||. ++|+.|+|.|+|++|++++.|.
T Consensus 63 ----~~~~~~~~~-g~-----~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~ 132 (444)
T PRK07205 63 ----KGYYGYAEI-GQ-----GEELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALL 132 (444)
T ss_pred ----CCeEEEEEe-cC-----CCcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHH
Confidence 112455554 32 2367999999999985 3899999999999999999999
Q ss_pred hccCCCCccEEEEEeCCcCCCCcchHHHHhcC
Q 002959 216 QWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQH 247 (862)
Q Consensus 216 ~~~~~p~~~I~Flf~~aEE~gl~GS~~fv~~h 247 (862)
+.+.+++++|.|+|.++||.|..|++.|+...
T Consensus 133 ~~~~~~~~~i~l~~~~dEE~g~~g~~~~~~~~ 164 (444)
T PRK07205 133 DAGVQFNKRIRFIFGTDEETLWRCMNRYNEVE 164 (444)
T ss_pred HcCCCCCCcEEEEEECCcccCcccHHHHHhCC
Confidence 98888899999999999999999999998644
No 49
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=99.12 E-value=1.6e-09 Score=126.65 Aligned_cols=138 Identities=16% Similarity=0.266 Sum_probs=105.9
Q ss_pred CCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccc
Q 002959 84 FSELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLN 163 (862)
Q Consensus 84 fs~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~ 163 (862)
...++.++.|++|++| |++.+ .++++.+||.++++++| ++++.| ...
T Consensus 7 ~~~~~~~~~l~~Lv~i-ps~S~--~e~~~~~~l~~~~~~~G------~~~~~d------------------------~~g 53 (485)
T PRK15026 7 LSPQPLWDIFAKICSI-PHPSY--HEEQLAEYIVGWAKEKG------FHVERD------------------------QVG 53 (485)
T ss_pred cCHHHHHHHHHHHhCC-CCCCC--CHHHHHHHHHHHHHhCC------CEEEEE------------------------ecC
Confidence 4578899999999997 56554 44589999999999998 344443 246
Q ss_pred eEEEEEcCCCCCCCCCCeEEEEeecCccCC------------------------CCCC---CCChhHHHHHHHHHHHHHh
Q 002959 164 HIVLRILPKYASEAGENAILVSSHIDTVSA------------------------GEGA---GDCSSCVAVMLELARVMSQ 216 (862)
Q Consensus 164 NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~------------------------spGA---~Dd~sgva~~LE~ar~L~~ 216 (862)
|+++++++.. +....+.|++.+|+|+|+. ++|+ .|+++|+|++|.++ .+
T Consensus 54 nvi~~~~~~~-g~~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l---~~ 129 (485)
T PRK15026 54 NILIRKPATA-GMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVL---AD 129 (485)
T ss_pred eEEEEEcCCC-CCCCCCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHH---Hh
Confidence 8998886531 1134578999999999974 2777 49999999998876 33
Q ss_pred ccCCCCccEEEEEeCCcCCCCcchHHHHhcCCccCCccEEEEeecC
Q 002959 217 WAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAM 262 (862)
Q Consensus 217 ~~~~p~~~I~Flf~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD~~ 262 (862)
.+. ++.+|.++|+.+||.|+.||+.+.. ...+.+++||+|..
T Consensus 130 ~~~-~~~~i~~l~t~dEE~G~~ga~~l~~---~~~~~~~~i~~e~~ 171 (485)
T PRK15026 130 ENV-VHGPLEVLLTMTEEAGMDGAFGLQS---NWLQADILINTDSE 171 (485)
T ss_pred CCC-CCCCEEEEEEcccccCcHhHHHhhh---ccCCcCEEEEeCCC
Confidence 333 3678999999999999999999863 22467999999976
No 50
>PRK06156 hypothetical protein; Provisional
Probab=99.12 E-value=1.5e-09 Score=127.88 Aligned_cols=138 Identities=14% Similarity=0.188 Sum_probs=102.9
Q ss_pred CHHHHHHHHHHHHccCCCC-CC----C-HHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcccc
Q 002959 85 SELEAMKHVKALTQLGPHA-VG----S-DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLI 158 (862)
Q Consensus 85 s~erA~~~L~~L~~igpr~-~G----S-~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~ 158 (862)
..+++.+.|++|++|..-. .+ . ++.....+||.+.+++.|. +++.
T Consensus 44 ~~~~~~~~l~~lv~i~S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G~------~~~~----------------------- 94 (520)
T PRK06156 44 YGAAAIESLRELVAFPTVRVEGVPQHENPEFIGFKKLLKSLARDFGL------DYRN----------------------- 94 (520)
T ss_pred hHHHHHHHHHHhcCcCcccCCCCCccCCccHHHHHHHHHHHHHHCCC------eEEe-----------------------
Confidence 4567889999999874311 11 1 1223567999999999873 2211
Q ss_pred ccccceEE-EEEcCCCCCCCCCCeEEEEeecCccCC-------------------------CCCCCCChhHHHHHHHHHH
Q 002959 159 YSDLNHIV-LRILPKYASEAGENAILVSSHIDTVSA-------------------------GEGAGDCSSCVAVMLELAR 212 (862)
Q Consensus 159 Y~~~~NVi-~~i~g~~~~~~~~~~Vll~AH~Dsv~~-------------------------spGA~Dd~sgva~~LE~ar 212 (862)
...||+ ++++|+ ..+.|++.+|+|+||. ++|+.|++.|+++++.+++
T Consensus 95 --~~~~v~~~~~~g~-----~~~~l~l~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~ 167 (520)
T PRK06156 95 --VDNRVLEIGLGGS-----GSDKVGILTHADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMK 167 (520)
T ss_pred --cCCeEEEEEecCC-----CCCeEEEEEecCccCCCCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHH
Confidence 112344 676653 2368999999999973 3799999999999999999
Q ss_pred HHHhccCCCCccEEEEEeCCcCCCCcchHHHHhcCCccCCccEEEEeec
Q 002959 213 VMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEA 261 (862)
Q Consensus 213 ~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD~ 261 (862)
.|.+.+.+++++|.|+|+.+||.|..|++.++.++. ....++|+|+
T Consensus 168 ~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~---~~~~~~~~D~ 213 (520)
T PRK06156 168 AIKDSGLPLARRIELLVYTTEETDGDPLKYYLERYT---PPDYNITLDA 213 (520)
T ss_pred HHHHcCCCCCceEEEEEecccccCchhHHHHHHhcC---CCCeEEeeCC
Confidence 999888788899999999999999999999996543 3466777775
No 51
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=99.11 E-value=8.6e-10 Score=123.09 Aligned_cols=129 Identities=21% Similarity=0.211 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceE
Q 002959 86 ELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (862)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (862)
.+++.+.|++|.+|.. .|.+++++.+||.++|+++|. +++.+ ...|+
T Consensus 9 ~~~~~~~l~~lv~i~s---~s~~e~~~~~~l~~~l~~~g~------~~~~~------------------------~~~~~ 55 (346)
T PRK00466 9 KQKAKELLLDLLSIYT---PSGNETNATKFFEKISNELNL------KLEIL------------------------PDSNS 55 (346)
T ss_pred HHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHHcCC------eEEEe------------------------cCCCc
Confidence 3688999999999843 234456889999999999982 33332 12243
Q ss_pred EEEEcCCCCCCCCCCeEEEEeecCccCC------------CCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCc
Q 002959 166 VLRILPKYASEAGENAILVSSHIDTVSA------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGE 233 (862)
Q Consensus 166 i~~i~g~~~~~~~~~~Vll~AH~Dsv~~------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aE 233 (862)
++ .|. +.|++++|+|+||. ++|+.|++.|+|++|++++.|.+.+ .+|.|+|..+|
T Consensus 56 ~~--~g~-------~~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~----~~i~~~~~~dE 122 (346)
T PRK00466 56 FI--LGE-------GDILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEKG----IKVMVSGLADE 122 (346)
T ss_pred Ee--cCC-------CeEEEEeccccCCCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcC----CCEEEEEEcCc
Confidence 32 231 35999999999985 3999999999999999999998754 35899999999
Q ss_pred CCCCcchHHHHhcCCccCCccEEEEeecCc
Q 002959 234 EEGLNGAHSFVTQHPWSTTIRVAVDLEAMG 263 (862)
Q Consensus 234 E~gl~GS~~fv~~h~~~~~v~a~iNLD~~G 263 (862)
|.|..|++.+++++. +..++|..|..+
T Consensus 123 E~g~~G~~~l~~~~~---~~d~~i~~ep~~ 149 (346)
T PRK00466 123 ESTSIGAKELVSKGF---NFKHIIVGEPSN 149 (346)
T ss_pred ccCCccHHHHHhcCC---CCCEEEEcCCCC
Confidence 999999999996542 355677777554
No 52
>PRK08652 acetylornithine deacetylase; Provisional
Probab=99.10 E-value=8.8e-10 Score=122.33 Aligned_cols=130 Identities=25% Similarity=0.300 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEE
Q 002959 87 LEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIV 166 (862)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NVi 166 (862)
|++.+.+++|.++ |-+. .++.++.+||.++|+++| ++++.+. . + +..|++
T Consensus 2 ~~~~~~~~~lv~i-ps~s--~~e~~~~~~l~~~l~~~G------~~v~~~~--~--------~-----------~~~~~~ 51 (347)
T PRK08652 2 ERAKELLKQLVKI-PSPS--GQEDEIALHIMEFLESLG------YDVHIES--D--------G-----------EVINIV 51 (347)
T ss_pred hhHHHHHHHHhcC-CCCC--CchHHHHHHHHHHHHHcC------CEEEEEe--c--------C-----------ceeEEE
Confidence 6788999999997 3333 345689999999999998 3344321 0 0 245666
Q ss_pred EEEcCCCCCCCCCCeEEEEeecCccCC------------CCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcC
Q 002959 167 LRILPKYASEAGENAILVSSHIDTVSA------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEE 234 (862)
Q Consensus 167 ~~i~g~~~~~~~~~~Vll~AH~Dsv~~------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE 234 (862)
+ +. .+.|++.+|+|+||. ++|+.|+++|+|+||++++.|.+. .++.+|.|+|..+||
T Consensus 52 ~---~~------~~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~dEE 120 (347)
T PRK08652 52 V---NS------KAELFVEVHYDTVPVRAEFFVDGVYVYGTGACDAKGGVAAILLALEELGKE--FEDLNVGIAFVSDEE 120 (347)
T ss_pred c---CC------CCEEEEEccccccCCCCCCEEECCEEEeccchhhhHHHHHHHHHHHHHhhc--ccCCCEEEEEecCcc
Confidence 5 21 257999999999985 489999999999999999999864 346799999999999
Q ss_pred CCCcchHHHHhcCCccCCccEEEEeec
Q 002959 235 EGLNGAHSFVTQHPWSTTIRVAVDLEA 261 (862)
Q Consensus 235 ~gl~GS~~fv~~h~~~~~v~a~iNLD~ 261 (862)
.|..|++.+++++. ...+|..|.
T Consensus 121 ~g~~G~~~~~~~~~----~d~~i~~ep 143 (347)
T PRK08652 121 EGGRGSALFAERYR----PKMAIVLEP 143 (347)
T ss_pred cCChhHHHHHHhcC----CCEEEEecC
Confidence 99899999996642 156777775
No 53
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=99.10 E-value=1.2e-09 Score=124.93 Aligned_cols=128 Identities=16% Similarity=0.180 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHccCCCCC-------CCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccc
Q 002959 87 LEAMKHVKALTQLGPHAV-------GSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIY 159 (862)
Q Consensus 87 erA~~~L~~L~~igpr~~-------GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y 159 (862)
+|+.+.+-++++|..... .+..+++.+++|.++|+++|.+ ++++|.
T Consensus 3 ~~~~~~f~~~~~i~s~s~~~~~~~ps~~~~~~~a~~l~~~l~~lG~~-----~v~~d~---------------------- 55 (410)
T TIGR01882 3 EELLPRFLTYVKVNTRSDENSDTCPSTPGQLTFGNMLVDDLKSLGLQ-----DAHYDE---------------------- 55 (410)
T ss_pred hHHHHHHHhhEEEecccCCCCCCCCCCHhHHHHHHHHHHHHHHcCCc-----eEEEcC----------------------
Confidence 688889999998743321 1224457999999999999931 255530
Q ss_pred cccceEEEEEcCCCCCCCCCCeEEEEeecCccCC----------------------------------------------
Q 002959 160 SDLNHIVLRILPKYASEAGENAILVSSHIDTVSA---------------------------------------------- 193 (862)
Q Consensus 160 ~~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~---------------------------------------------- 193 (862)
+..||+++++|.. ..+.+.|++.||+|||+.
T Consensus 56 -~~gnv~~~~~~~~--~~~~~~i~~~aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~ 132 (410)
T TIGR01882 56 -KNGYVIATIPSNT--DKDVPTIGFLAHVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLIT 132 (410)
T ss_pred -CceEEEEEecCCC--CCCCCEEEEEEecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEE
Confidence 3789999998742 112388999999999973
Q ss_pred CCC----CCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCCCCcchHHHHh
Q 002959 194 GEG----AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVT 245 (862)
Q Consensus 194 spG----A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~fv~ 245 (862)
+.| +.||++|+|+||++++.|++.+..++.+|.|+|..+||.| .|++.+..
T Consensus 133 ~~g~~l~G~D~KgglAa~l~A~~~L~e~~~~~~g~I~~~ft~dEE~g-~Ga~~l~~ 187 (410)
T TIGR01882 133 TDGTTLLGADDKAGIAEIMTAADYLINHPEIKHGTIRVAFTPDEEIG-RGAHKFDV 187 (410)
T ss_pred cCCCEeecccCHHHHHHHHHHHHHHHhCCCCCCCCEEEEEECcccCC-cCcchhhh
Confidence 111 3799999999999999998853345779999999999987 59988863
No 54
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=99.09 E-value=1.2e-09 Score=118.41 Aligned_cols=171 Identities=18% Similarity=0.176 Sum_probs=123.9
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEEeecCccCCCCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCCCC----
Q 002959 162 LNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGL---- 237 (862)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl---- 237 (862)
..|+|+.=. ..++.++++||.|||. -|+.||-.|++...|+++.|...+ ..+-++.+++||.|+
T Consensus 178 ~y~~Ia~~~------~en~vv~i~AH~DHW~--~G~tDN~lg~~~AV~~~~~lr~~~----~~~~lv~FtAEE~g~p~~~ 245 (486)
T COG4882 178 DYNVIAVDG------GENGVVLIGAHLDHWY--TGFTDNILGVAQAVETAGRLRGRG----LAAGLVVFTAEEHGMPGMA 245 (486)
T ss_pred EEEEEEecC------CCCCceEEeechhhhh--hcccchhhhHHHHHHHHHHHhhcC----cceeEEEEeccccCCCCCc
Confidence 456665322 3456899999999998 599999999999999999998743 456678889999876
Q ss_pred -----cchHHHHhcCCccCCccEEEEeecCcCCCCeeEEEeCCCHHHHHHHHHHccCCCCcccccccccCCCCCCCCchH
Q 002959 238 -----NGAHSFVTQHPWSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQ 312 (862)
Q Consensus 238 -----~GS~~fv~~h~~~~~v~a~iNLD~~G~gG~~~lfq~g~~~~li~~~~~~a~~p~~~~l~~eif~~g~ips~TD~~ 312 (862)
.||+.|.++.+..+++.+.+|+|.+|.+-.- . ..-|.|++.-+++-+.. +-.++.+ .|-.
T Consensus 246 sfyWa~GSr~~lk~~k~~~~v~~~VN~Dv~g~~~lv---~-~~~P~L~e~~~~~g~~~---vespe~y--------~Ds~ 310 (486)
T COG4882 246 SFYWAAGSRGLLKESKAAEEVEAYVNFDVAGYRCLV---A-SGAPQLVEHALEAGAVE---VESPEPY--------CDSI 310 (486)
T ss_pred ceeecccchHHHhhcCCchhhhheeccccccccchh---h-hcChHHHHHHHHhCCce---ecCCCcc--------cchh
Confidence 3899999888888999999999999976432 1 23477777666542211 1124444 4667
Q ss_pred HHhhhcCCeEEEEeecC---CCCCCCCcCCccCCCChhHHHHHHHHHHHHHHHHhcC
Q 002959 313 VYTEVAGLSGLDFAYTD---KSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASS 366 (862)
Q Consensus 313 ~F~~~~GIPgld~a~~~---~~~~YHT~~Dt~d~Id~~sLq~~g~~~l~ll~~La~~ 366 (862)
.|.. .|||.+.+...+ .+..|||+.||+...| ..-+++.++.++++.
T Consensus 311 ~y~~-aGiPS~Ti~SL~~~~~~e~yh~p~Dtpa~~~------n~~t~~d~a~r~v~~ 360 (486)
T COG4882 311 MYAW-AGIPSLTIHSLWCPGVQEAYHTPRDTPASWD------NAWTAVDAAVRTVTR 360 (486)
T ss_pred hhhh-cCCCeeEeeeccCCCccceecCCCCCchhHH------HHHHHHHHHHHHHhc
Confidence 7877 999999987665 3567999999995432 223455566666644
No 55
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=99.08 E-value=7.1e-10 Score=111.87 Aligned_cols=164 Identities=23% Similarity=0.306 Sum_probs=115.2
Q ss_pred EEEeecCccCC-------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCCCCc-chHH
Q 002959 183 LVSSHIDTVSA-------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLN-GAHS 242 (862)
Q Consensus 183 ll~AH~Dsv~~-------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~-GS~~ 242 (862)
|+.+|+|+||. ++|+.|++.|+++++.+++.|++.+.+++++|+|+|..+||.|.. |++.
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~~~ 80 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGAKH 80 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHHHH
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchhhh
Confidence 68999999992 589999999999999999999988889999999999999999998 9999
Q ss_pred HHhcC-CccCCccEEEEeecCcCCCCeeEEEeCCCHHHHHHHHHHccCCCCcccccccccCCCCCCCCchHHHhh--hcC
Q 002959 243 FVTQH-PWSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTE--VAG 319 (862)
Q Consensus 243 fv~~h-~~~~~v~a~iNLD~~G~gG~~~lfq~g~~~~li~~~~~~a~~p~~~~l~~eif~~g~ips~TD~~~F~~--~~G 319 (862)
++++. ....+....+..|..+.+.-. ...++.+++...++.+...+... +. ...+..||...|.+ ..+
T Consensus 81 l~~~~~~~~~~~~~~~~~e~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~g~tD~~~~~~~~~~~ 151 (189)
T PF01546_consen 81 LLEEGAFFGLHPDYVIIGEPTGKGGVG----SDNDPPLVQALQAAAQEVGGEPP--EP---VASGGGTDAGFLAEVKGLG 151 (189)
T ss_dssp HHHHCEEEEEEESEEEECECETTSEEE----HCTCHHHHHHHHHHHHHTTSSEE--EE---EEESSSSTHHHHHCHHHTT
T ss_pred hhhhccccccccccccccccccccccc----ccccHHHHHHHHHHHHHHhhccc--cc---cceeccccchhhhhhhccc
Confidence 99763 112346666666655443211 22456677766665443333111 11 13467899999995 478
Q ss_pred CeEEEEeecCCCCCCCCcCCccCCCChhHHHHHHHHHHHHH
Q 002959 320 LSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFL 360 (862)
Q Consensus 320 IPgld~a~~~~~~~YHT~~Dt~d~Id~~sLq~~g~~~l~ll 360 (862)
+|.+.+.... ...|++.. +++.+.+....+.+..++
T Consensus 152 ~~~i~~G~~~--~~~H~~~E---~i~~~~l~~~~~~~~~~l 187 (189)
T PF01546_consen 152 IPAIGFGPGG--SNAHTPDE---YIDIEDLVKGAKIYAALL 187 (189)
T ss_dssp EEEEEEESCE--ESTTSTT----EEEHHHHHHHHHHHHHHH
T ss_pred cceeeeCCCC--CCCCCCCc---EecHHHHHHHHHHHHHHH
Confidence 8888765444 56898654 455677776666666554
No 56
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=99.08 E-value=1e-08 Score=114.87 Aligned_cols=147 Identities=16% Similarity=0.186 Sum_probs=90.0
Q ss_pred CCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCCCCcchHHHHhcCCccCCccEEEEeecCcC--------CCCe
Q 002959 197 AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGI--------GGRS 268 (862)
Q Consensus 197 A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD~~G~--------gG~~ 268 (862)
+.||++||+++++++|.|.+.+.+++.+|+|+|+..||.| .|+..-+ ..+...+|.+|.... .|+.
T Consensus 181 ~~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG-~gaa~~i-----~pd~a~~i~vd~~~~~p~~~~lg~Gp~ 254 (343)
T TIGR03106 181 HLDDKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVG-SGASHAL-----PPDVAELVSVDNGTVAPGQNSSEHGVT 254 (343)
T ss_pred ecccHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccC-ccchhcc-----cHhhhccEEEEecccCCCCCcCCCCce
Confidence 4899999999999999999876678899999999999999 5632111 123333466663321 2333
Q ss_pred eEEE-eC-C-CHHHHHHHHHHccCCCCcccccccccCCCCCCCCchHHHhh-hcCCeEEEEeecCCCCCCCCcCCccCCC
Q 002959 269 ALFQ-AG-P-NLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTE-VAGLSGLDFAYTDKSAVYHTKNDRLDLL 344 (862)
Q Consensus 269 ~lfq-~g-~-~~~li~~~~~~a~~p~~~~l~~eif~~g~ips~TD~~~F~~-~~GIPgld~a~~~~~~~YHT~~Dt~d~I 344 (862)
+... .+ + |+.+.+...+.|+. .+-..-.+++.. .+||-..+.. ..|+|...++.--. +-|| .+.+
T Consensus 255 i~~~d~~~~~~~~l~~~l~~~A~~-~~Ip~Q~~~~~~----~gtDa~~~~~~~~Gi~t~~i~iP~R--y~Hs----~e~~ 323 (343)
T TIGR03106 255 IAMADSSGPFDYHLTRKLIRLCQD-HGIPHRRDVFRY----YRSDAASAVEAGHDIRTALVTFGLD--ASHG----YERT 323 (343)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHH-cCCCcEEEecCC----CCChHHHHHHcCCCCCEEEeecccc--chhh----hhhc
Confidence 3223 22 2 77777776665532 221111233321 3566666543 26899887764322 2477 5667
Q ss_pred ChhHHHHHHHHHHHHH
Q 002959 345 KPGSLQHLGENMLDFL 360 (862)
Q Consensus 345 d~~sLq~~g~~~l~ll 360 (862)
+.+.+.++.+.+.+++
T Consensus 324 ~~~D~~~~~~Ll~~~~ 339 (343)
T TIGR03106 324 HIDALEALANLLVAYA 339 (343)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 7777776666555443
No 57
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.08 E-value=1.8e-09 Score=122.37 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=105.7
Q ss_pred CHHHHHHHHHHHHccCCCCCCC-HHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccc
Q 002959 85 SELEAMKHVKALTQLGPHAVGS-DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLN 163 (862)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS-~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~ 163 (862)
..+++.+.|++|++|..- ..+ .++.++++||.++|+++|. +++.+. ...+. . .. ......
T Consensus 4 ~~~~~~~~l~~lv~i~S~-s~~~~~~~~~a~~l~~~l~~~G~------~~~~~~--~~~~~--~------~~--~~~~~~ 64 (394)
T PRK08651 4 MMFDIVEFLKDLIKIPTV-NPPGENYEEIAEFLRDTLEELGF------STEIIE--VPNEY--V------KK--HDGPRP 64 (394)
T ss_pred hHHHHHHHHHHHhcCCcc-CCCCcCHHHHHHHHHHHHHHcCC------eEEEEe--cCccc--c------cc--ccCCcc
Confidence 347888999999998432 212 3346899999999999983 344332 11000 0 00 001256
Q ss_pred eEEEEEcCCCCCCCCCCeEEEEeecCccCC--------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCc
Q 002959 164 HIVLRILPKYASEAGENAILVSSHIDTVSA--------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKN 223 (862)
Q Consensus 164 NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~ 223 (862)
|++++. +. . ++.|++.+|+|+||. ++|+.|++.|++++|++++.|.+.+ ++
T Consensus 65 ~~~~~~-~~----~-~~~ill~~HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~ 135 (394)
T PRK08651 65 NLIARR-GS----G-NPHLHFNGHYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPAG---DG 135 (394)
T ss_pred eEEEEe-CC----C-CceEEEEeeeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhcC---CC
Confidence 788764 31 2 278999999999975 2788999999999999999998754 78
Q ss_pred cEEEEEeCCcCCCCcchHHHHhcCCccCCccEEEEeecCc
Q 002959 224 AVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMG 263 (862)
Q Consensus 224 ~I~Flf~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD~~G 263 (862)
+|+|+|..+||.|..|++.++++... +...++..|..|
T Consensus 136 ~v~~~~~~~EE~g~~G~~~~~~~~~~--~~d~~i~~~~~~ 173 (394)
T PRK08651 136 NIELAIVPDEETGGTGTGYLVEEGKV--TPDYVIVGEPSG 173 (394)
T ss_pred CEEEEEecCccccchhHHHHHhccCC--CCCEEEEecCCC
Confidence 99999999999998999999965432 245666666544
No 58
>PRK05111 acetylornithine deacetylase; Provisional
Probab=99.08 E-value=2.2e-09 Score=121.16 Aligned_cols=140 Identities=20% Similarity=0.255 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHccCCCCCCCH-----HHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcccccc
Q 002959 86 ELEAMKHVKALTQLGPHAVGSD-----ALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYS 160 (862)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~-----~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~ 160 (862)
.++..+.+++|.++.. ..+.+ ++.++.+||.+.|+++| ++++.+. .. + ..
T Consensus 4 ~~~~i~~l~~lv~i~s-~s~~e~~~~~~~~~~~~~l~~~l~~~g------~~~~~~~--~~-~---------------~~ 58 (383)
T PRK05111 4 LPSFIEMYRALIATPS-ISATDPALDQSNRAVIDLLAGWFEDLG------FNVEIQP--VP-G---------------TR 58 (383)
T ss_pred chHHHHHHHHHhCcCC-cCCCCcccccchHHHHHHHHHHHHHCC------CeEEEEe--cC-C---------------CC
Confidence 3578899999999743 33322 23579999999999998 3344321 10 0 01
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEEeecCccCC--------------------CCCCCCChhHHHHHHHHHHHHHhccCC
Q 002959 161 DLNHIVLRILPKYASEAGENAILVSSHIDTVSA--------------------GEGAGDCSSCVAVMLELARVMSQWAHE 220 (862)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~ 220 (862)
+..|+++++ |. . .+.|++.+|+|+||. ++|+.|++++++++|++++.|.+. .
T Consensus 59 ~~~nvia~~-g~----~-~~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~ 130 (383)
T PRK05111 59 GKFNLLASL-GS----G-EGGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLT--K 130 (383)
T ss_pred CCceEEEEe-CC----C-CCeEEEEeeeceecCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhc--C
Confidence 357999998 43 1 236999999999974 489999999999999999999874 3
Q ss_pred CCccEEEEEeCCcCCCCcchHHHHhcCCccCCccEEEEee
Q 002959 221 FKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLE 260 (862)
Q Consensus 221 p~~~I~Flf~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD 260 (862)
++++|+|+|..+||.|..|++.++++... ....+|.-|
T Consensus 131 ~~~~i~~~~~~~EE~g~~G~~~~~~~~~~--~~d~~i~~e 168 (383)
T PRK05111 131 LKKPLYILATADEETSMAGARAFAEATAI--RPDCAIIGE 168 (383)
T ss_pred CCCCeEEEEEeccccCcccHHHHHhcCCC--CCCEEEEcC
Confidence 56889999999999999999999965432 224455444
No 59
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.06 E-value=1.4e-09 Score=122.15 Aligned_cols=137 Identities=16% Similarity=0.171 Sum_probs=101.2
Q ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEE
Q 002959 88 EAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVL 167 (862)
Q Consensus 88 rA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~ 167 (862)
++.+.|++|.++. .-|..+.++.+||.+.|+++| ++++.. .. ....|+++
T Consensus 3 ~~~~~l~~Lv~ip---s~s~~e~~~~~~l~~~l~~~G------~~~~~~--~~-------------------~~~~n~~~ 52 (375)
T PRK13009 3 DVLELAQDLIRRP---SVTPDDAGCQDLLAERLEALG------FTCERM--DF-------------------GDVKNLWA 52 (375)
T ss_pred hHHHHHHHHhCCC---CCCCchhhHHHHHHHHHHHcC------CeEEEe--cc-------------------CCCcEEEE
Confidence 4677889999862 223445678999999999997 233321 10 13579999
Q ss_pred EEcCCCCCCCCCCeEEEEeecCccCC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCccEE
Q 002959 168 RILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVI 226 (862)
Q Consensus 168 ~i~g~~~~~~~~~~Vll~AH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~ 226 (862)
++ |. +.+.|++.+|+|+||. ++|+.|+++|++++|++++.|.+.+.+++++|+
T Consensus 53 ~~-g~-----~~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~ 126 (375)
T PRK13009 53 RR-GT-----EGPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSIA 126 (375)
T ss_pred Ee-cC-----CCCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceEE
Confidence 87 42 3468999999999985 369999999999999999999987777889999
Q ss_pred EEEeCCcCCCC-cchHHHHhcCCc-cCCccEEEEee
Q 002959 227 FLFNTGEEEGL-NGAHSFVTQHPW-STTIRVAVDLE 260 (862)
Q Consensus 227 Flf~~aEE~gl-~GS~~fv~~h~~-~~~v~a~iNLD 260 (862)
|+|..+||.+. .|++.+++.... .....++|..|
T Consensus 127 ~~~~~~EE~~~~~G~~~~~~~~~~~~~~~d~~i~~e 162 (375)
T PRK13009 127 FLITSDEEGPAINGTVKVLEWLKARGEKIDYCIVGE 162 (375)
T ss_pred EEEEeecccccccCHHHHHHHHHHcCcCCCEEEEcC
Confidence 99999999854 699988743211 12345555555
No 60
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=99.06 E-value=2e-09 Score=122.82 Aligned_cols=145 Identities=20% Similarity=0.244 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEE
Q 002959 87 LEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIV 166 (862)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NVi 166 (862)
+++.+.|++|.++.... ..++.++++|+.+.|++++. .++.+..... . ...|++
T Consensus 13 ~~~~~~l~~lv~~~s~s--~~~~~~~~~~l~~~l~~~g~------~~~~~~~~~~----------------~--~~~n~~ 66 (409)
T COG0624 13 DDILELLKELVRIPSVS--AGEEAEAAELLAEWLEELGF------EVEEDEVGPG----------------P--GRPNLV 66 (409)
T ss_pred HHHHHHHHHHhcCCCCC--cccchHHHHHHHHHHHHcCC------ceEEeecCCC----------------C--CceEEE
Confidence 45567888898864332 35667999999999999883 3444321100 0 356999
Q ss_pred EEEcCCCCCCCCCCeEEEEeecCccCC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCccE
Q 002959 167 LRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAV 225 (862)
Q Consensus 167 ~~i~g~~~~~~~~~~Vll~AH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I 225 (862)
+++.+. .+++.|++++|+|+||. ++|+.|++.++++++.+++.+.+.+..++.+|
T Consensus 67 ~~~~~~----~~~~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~~v 142 (409)
T COG0624 67 ARLGGG----DGGPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAAGGELPGDV 142 (409)
T ss_pred EEecCC----CCCCeEEEeccccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCeEE
Confidence 999874 23389999999999986 38999999999999999999999878889999
Q ss_pred EEEEeCCcCCCCcchHHHHhcCCc--cCCccEEEEeec
Q 002959 226 IFLFNTGEEEGLNGAHSFVTQHPW--STTIRVAVDLEA 261 (862)
Q Consensus 226 ~Flf~~aEE~gl~GS~~fv~~h~~--~~~v~a~iNLD~ 261 (862)
.+++..+||.|..|+..++.++.. ..+..+.|..|.
T Consensus 143 ~~~~~~dEE~g~~~~~~~~~~~~~~~~~~~d~~i~~E~ 180 (409)
T COG0624 143 RLLFTADEESGGAGGKAYLEEGEEALGIRPDYEIVGEP 180 (409)
T ss_pred EEEEEeccccCCcchHHHHHhcchhhccCCCEEEeCCC
Confidence 999999999999999999976643 356678888886
No 61
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=99.05 E-value=1.8e-09 Score=125.59 Aligned_cols=126 Identities=14% Similarity=0.166 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHccCCCCC---------CCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccc
Q 002959 87 LEAMKHVKALTQLGPHAV---------GSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTL 157 (862)
Q Consensus 87 erA~~~L~~L~~igpr~~---------GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~ 157 (862)
+++.+.|++|++|..-.. ...+..++.+|+.+.++++|. +++.
T Consensus 13 ~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~------~~~~---------------------- 64 (466)
T TIGR01886 13 DALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDGF------TTKN---------------------- 64 (466)
T ss_pred HHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCC------eEEE----------------------
Confidence 567788999998743211 023446789999999999983 3332
Q ss_pred cccccceEEEEEcCCCCCCCCCCeEEEEeecCccCC-------------------CCCCCCChhHHHHHHHHHHHHHhcc
Q 002959 158 IYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSA-------------------GEGAGDCSSCVAVMLELARVMSQWA 218 (862)
Q Consensus 158 ~Y~~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~-------------------spGA~Dd~sgva~~LE~ar~L~~~~ 218 (862)
..|+++++.+. .+++.|++.+|+|+||. ++|+.||+.|++++|.+++.|++.+
T Consensus 65 ----~~~~~~~~~~~----~~~~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~ 136 (466)
T TIGR01886 65 ----FDNYAGHVEYG----AGDERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKELG 136 (466)
T ss_pred ----ecCCceeEEec----CCCCEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHhC
Confidence 11222222221 23468999999999975 4899999999999999999999988
Q ss_pred CCCCccEEEEEeCCcCCCCcchHHHHhcCC
Q 002959 219 HEFKNAVIFLFNTGEEEGLNGAHSFVTQHP 248 (862)
Q Consensus 219 ~~p~~~I~Flf~~aEE~gl~GS~~fv~~h~ 248 (862)
.+++++|+|++..+||.|..|++.+++++.
T Consensus 137 ~~~~~~i~~~~~~dEE~g~~g~~~~~~~~~ 166 (466)
T TIGR01886 137 LPPSKKIRFVVGTNEETGWVDMDYYFKHEE 166 (466)
T ss_pred CCCCCCEEEEEECccccCcccHHHHHhcCc
Confidence 888999999999999999999999997654
No 62
>PRK08554 peptidase; Reviewed
Probab=99.04 E-value=2.9e-09 Score=123.06 Aligned_cols=141 Identities=17% Similarity=0.234 Sum_probs=103.2
Q ss_pred HHHHHHHHHHccCCCCCCC---HHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccce
Q 002959 88 EAMKHVKALTQLGPHAVGS---DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNH 164 (862)
Q Consensus 88 rA~~~L~~L~~igpr~~GS---~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~N 164 (862)
++.+.|++|+++.....++ .+..++.+|+.+.++++|. +++.. .. .+..|
T Consensus 2 ~~~~~l~~LV~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G~------~~~~~--~~-------------------~~~~~ 54 (438)
T PRK08554 2 DVLELLSSLVSFETVNDPSKGIKPSKECPKFIKDTLESWGI------ESELI--EK-------------------DGYYA 54 (438)
T ss_pred hHHHHHHHHhCCCCCCCcccCcchHHHHHHHHHHHHHHCCC------eEEEE--ec-------------------CCceE
Confidence 3577889999874422111 2346899999999999983 33321 10 02468
Q ss_pred EEEEEcCCCCCCCCCCeEEEEeecCccCC--------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCcc
Q 002959 165 IVLRILPKYASEAGENAILVSSHIDTVSA--------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNA 224 (862)
Q Consensus 165 Vi~~i~g~~~~~~~~~~Vll~AH~Dsv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (862)
+++.+ |. .++.|++.+|+|+||. ++|+.|+++|++++|.+++.|.+. .++++
T Consensus 55 l~~~~-~~-----~~~~l~l~gH~DtVp~~~~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~--~~~~~ 126 (438)
T PRK08554 55 VYGEI-GE-----GKPKLLFMAHFDVVPVNPEEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE--PLNGK 126 (438)
T ss_pred EEEEe-CC-----CCCEEEEEeccccCCCCccccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc--CCCCC
Confidence 88876 32 2357999999999985 389999999999999999999874 36788
Q ss_pred EEEEEeCCcCCCCcchHHHHhcCC-ccCCccEEEEeecCc
Q 002959 225 VIFLFNTGEEEGLNGAHSFVTQHP-WSTTIRVAVDLEAMG 263 (862)
Q Consensus 225 I~Flf~~aEE~gl~GS~~fv~~h~-~~~~v~a~iNLD~~G 263 (862)
|.|+|+.+||.|..++..++++.. ......++|+.|..+
T Consensus 127 i~l~~~~dEE~g~~~~~~~~~~~~~~~~~~~~~iv~Ept~ 166 (438)
T PRK08554 127 VIFAFTGDEEIGGAMAMHIAEKLREEGKLPKYMINADGIG 166 (438)
T ss_pred EEEEEEcccccCccccHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 999999999998877777665432 234568899999754
No 63
>PRK13004 peptidase; Reviewed
Probab=98.99 E-value=6e-09 Score=118.62 Aligned_cols=137 Identities=18% Similarity=0.226 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceE
Q 002959 86 ELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (862)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (862)
.+++.+.+++|.++ |-+ |.++.++.+||.++|+++|.+ .++++ ...|+
T Consensus 14 ~~~~~~~l~~lv~i-ps~--s~~e~~~a~~l~~~l~~~G~~-----~~~~~------------------------~~~n~ 61 (399)
T PRK13004 14 KADMTRFLRDLIRI-PSE--SGDEKRVVKRIKEEMEKVGFD-----KVEID------------------------PMGNV 61 (399)
T ss_pred HHHHHHHHHHHhcC-CCC--CCchHHHHHHHHHHHHHcCCc-----EEEEc------------------------CCCeE
Confidence 35788999999986 333 334567899999999999831 01111 23588
Q ss_pred EEEEcCCCCCCCCCCeEEEEeecCccCC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCcc
Q 002959 166 VLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNA 224 (862)
Q Consensus 166 i~~i~g~~~~~~~~~~Vll~AH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (862)
++++.|. + +.|++.+|+|+||. ++|+.||++|++++|.+++.|.+.+..++.+
T Consensus 62 ~a~~~~~-----~-~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~ 135 (399)
T PRK13004 62 LGYIGHG-----K-KLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEYT 135 (399)
T ss_pred EEEECCC-----C-cEEEEEeccCccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCCe
Confidence 9988542 2 67999999999985 2689999999999999999999987778899
Q ss_pred EEEEEeCCcCC-CCcchHHHHhcCCccCCccEEEEeecC
Q 002959 225 VIFLFNTGEEE-GLNGAHSFVTQHPWSTTIRVAVDLEAM 262 (862)
Q Consensus 225 I~Flf~~aEE~-gl~GS~~fv~~h~~~~~v~a~iNLD~~ 262 (862)
|+|+|..+||. +..|++.++++... +...++..|..
T Consensus 136 i~~~~~~~EE~~~g~~~~~~~~~~~~--~~d~~i~~e~~ 172 (399)
T PRK13004 136 LYVTGTVQEEDCDGLCWRYIIEEDKI--KPDFVVITEPT 172 (399)
T ss_pred EEEEEEcccccCcchhHHHHHHhcCC--CCCEEEEccCC
Confidence 99999999996 45788888754221 24555555543
No 64
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=98.98 E-value=5.1e-09 Score=117.69 Aligned_cols=136 Identities=18% Similarity=0.194 Sum_probs=99.2
Q ss_pred HHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEEEE
Q 002959 90 MKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRI 169 (862)
Q Consensus 90 ~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i 169 (862)
.+.|++|.++. ..|..+.++++||.++|+++|. +++... . .+..|++++.
T Consensus 2 ~~~l~~lv~ip---s~s~~e~~~~~~i~~~l~~~G~------~~~~~~--~-------------------~~~~~~~~~~ 51 (370)
T TIGR01246 2 TELAKELISRP---SVTPNDAGCQDIIAERLEKLGF------EIEWMH--F-------------------GDTKNLWATR 51 (370)
T ss_pred hHHHHHHhcCC---CCCcchHHHHHHHHHHHHHCCC------EEEEEe--c-------------------CCCceEEEEe
Confidence 35688888862 2334456789999999999983 333321 0 0346888875
Q ss_pred cCCCCCCCCCCeEEEEeecCccCC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEE
Q 002959 170 LPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFL 228 (862)
Q Consensus 170 ~g~~~~~~~~~~Vll~AH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Fl 228 (862)
|. ..+.|++.+|+|+||. ++|+.|++.|+++++++++.+.+.+.+++++|+|+
T Consensus 52 -g~-----~~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~ 125 (370)
T TIGR01246 52 -GT-----GEPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLL 125 (370)
T ss_pred -cC-----CCcEEEEEccccccCCCCccccccCCCCcEEECCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 31 3468999999999985 37899999999999999999988777778899999
Q ss_pred EeCCcCCCC-cchHHHHhcCCc-cCCccEEEEeec
Q 002959 229 FNTGEEEGL-NGAHSFVTQHPW-STTIRVAVDLEA 261 (862)
Q Consensus 229 f~~aEE~gl-~GS~~fv~~h~~-~~~v~a~iNLD~ 261 (862)
|..+||.+. .|++.+++.... .....+++..|.
T Consensus 126 ~~~dEE~~~~~G~~~~~~~~~~~~~~~d~~i~~ep 160 (370)
T TIGR01246 126 ITSDEEGTAIDGTKKVVETLMARDELIDYCIVGEP 160 (370)
T ss_pred EEeccccCCCcCHHHHHHHHHhcCCCCCEEEEcCC
Confidence 999999865 699988743211 123455665553
No 65
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=98.98 E-value=3.4e-08 Score=110.77 Aligned_cols=149 Identities=20% Similarity=0.197 Sum_probs=99.3
Q ss_pred CCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCCCCcchHHHHhcCCccCCccEEEEeecCcCC-----------
Q 002959 197 AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIG----------- 265 (862)
Q Consensus 197 A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD~~G~g----------- 265 (862)
|-||..||++++|++|.+++. +++.+++++|+.-||.|+.||+.-+.+. +-..+|.+|..-++
T Consensus 176 alDdR~g~a~l~e~l~~l~~~--~~~~~l~~~~tvqEEvG~rGA~~aa~~i----~pD~aI~vDv~~~~d~~~~~~~~lg 249 (350)
T TIGR03107 176 AWDNRYGVLMILELLESLKDQ--ELPNTLIAGANVQEEVGLRGAHVSTTKF----NPDIFFAVDCSPAGDIYGDQGGKLG 249 (350)
T ss_pred ccccHHHHHHHHHHHHHhhhc--CCCceEEEEEEChhhcCchhhhhHHhhC----CCCEEEEEecCCcCCCCCCCccccC
Confidence 889999999999999999863 5788999999999999999999765332 22367777755332
Q ss_pred -CCeeEEE-eCC--CHHHHHHHHHHccCCCCcccccccccCCCCCCCCchH--HHhhhcCCeEEEEeecCCCCCCCCcCC
Q 002959 266 -GRSALFQ-AGP--NLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQ--VYTEVAGLSGLDFAYTDKSAVYHTKND 339 (862)
Q Consensus 266 -G~~~lfq-~g~--~~~li~~~~~~a~~p~~~~l~~eif~~g~ips~TD~~--~F~~~~GIPgld~a~~~~~~~YHT~~D 339 (862)
|+.+.+. .++ |+.+.+...+.|+. .+-. .+. ... ..+||-. .+.. .|+|.+.++.-- .+-||+.-
T Consensus 250 ~Gp~i~~~D~~~i~~~~l~~~l~~~A~~-~~I~-~Q~-~~~---~gGtDa~~~~~~~-~Gvpt~~i~ip~--Ry~Hs~~e 320 (350)
T TIGR03107 250 EGTLLRFFDPGHIMLPRMKDFLLTTAEE-AGIK-YQY-YVA---KGGTDAGAAHLKN-SGVPSTTIGVCA--RYIHSHQT 320 (350)
T ss_pred CCceEEEecCCCCCCHHHHHHHHHHHHH-cCCC-cEE-ecC---CCCchHHHHHHhC-CCCcEEEEccCc--ccccChhh
Confidence 3443232 233 78888777666532 1111 111 111 1356666 5555 899999886432 23588654
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHH
Q 002959 340 RLDLLKPGSLQHLGENMLDFLLQT 363 (862)
Q Consensus 340 t~d~Id~~sLq~~g~~~l~ll~~L 363 (862)
.++.+.+.++.+.+.+++..+
T Consensus 321 ---~i~~~D~~~~~~Ll~~~i~~l 341 (350)
T TIGR03107 321 ---LYSIDDFLAAQAFLQAIVKKL 341 (350)
T ss_pred ---eeeHHHHHHHHHHHHHHHHhc
Confidence 556777878777777777665
No 66
>PRK09961 exoaminopeptidase; Provisional
Probab=98.98 E-value=3.7e-08 Score=110.47 Aligned_cols=219 Identities=16% Similarity=0.202 Sum_probs=145.4
Q ss_pred HHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEEEEc
Q 002959 91 KHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRIL 170 (862)
Q Consensus 91 ~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~ 170 (862)
+.|++|+++ +-+.| .++++++++.+++++++. ++++| +..|+++++.
T Consensus 4 ~~L~~L~~~-~s~sG--~E~~v~~~i~~~l~~~~~------~v~~D------------------------~~Gnvi~~~~ 50 (344)
T PRK09961 4 SLLKALSEA-DAIAS--SEQEVRQILLEEADRLQK------EVRFD------------------------GLGSVLIRLN 50 (344)
T ss_pred HHHHHHHhC-CCCCC--ChHHHHHHHHHHHHhhCC------EEEEC------------------------CCCCEEEEEc
Confidence 568999985 44445 345899999999999872 34432 4678888876
Q ss_pred CCCCCCCCCCeEEEEeecCccCC----------------C----------------------------------------
Q 002959 171 PKYASEAGENAILVSSHIDTVSA----------------G---------------------------------------- 194 (862)
Q Consensus 171 g~~~~~~~~~~Vll~AH~Dsv~~----------------s---------------------------------------- 194 (862)
|+ +.+.|++.||+|+++. +
T Consensus 51 g~-----~~~~v~l~aHmDevg~~V~~I~~~G~l~~~~vGG~~~~~~~~~~v~i~~~~g~~i~Gvi~~~~~~~~~~~l~i 125 (344)
T PRK09961 51 ES-----TGPKVMICAHMDEVGFMVRSISREGAIDVLPVGNVRMAARQLQPVRITTREECKIPGLLNGDRQGNDVSAMRV 125 (344)
T ss_pred CC-----CCCEEEEEeccceeceEEEEECCCceEEEEeCCCccccccCCCEEEEEeCCCCEeeEEEChhhcCCCHHHEEE
Confidence 53 2236889999998862 0
Q ss_pred ------------------------------------CCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCCCCc
Q 002959 195 ------------------------------------EGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLN 238 (862)
Q Consensus 195 ------------------------------------pGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~ 238 (862)
.-|-||.+||++++|++|.+++. ++..+++|+|+..||.|+.
T Consensus 126 DiG~~s~ee~~~~GI~~Gd~v~~~~~~~~~~~~~i~gkalDnR~g~~~lle~l~~l~~~--~~~~~v~~~~tvqEEvG~r 203 (344)
T PRK09961 126 DIGARSYDEVMQAGIRPGDRVTFDTTFQVLPHQRVMGKAFDDRLGCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGLR 203 (344)
T ss_pred EcCCCCHHHHHhcCCCCCCEEEEcceeEEecCCEEEEeechhhHhHHHHHHHHHHhhhc--CCCceEEEEEEcccccchH
Confidence 23889999999999999999763 5789999999999999999
Q ss_pred chHHHHhcCCccCCccEEEEeecCcC---------------CCCeeEEE-eCC--CHHHHHHHHHHccCCCCcccccccc
Q 002959 239 GAHSFVTQHPWSTTIRVAVDLEAMGI---------------GGRSALFQ-AGP--NLWAVENFAAVAKYPSGQIIGQDLF 300 (862)
Q Consensus 239 GS~~fv~~h~~~~~v~a~iNLD~~G~---------------gG~~~lfq-~g~--~~~li~~~~~~a~~p~~~~l~~eif 300 (862)
||+...... +-..+|.+|..-. +|+.+-+. .++ |+.+.+...+.++.-. ...-.+.+
T Consensus 204 Ga~~aa~~i----~pd~~I~vDv~~~~d~~~~~~~~~~~lg~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~-Ip~Q~~~~ 278 (344)
T PRK09961 204 GGQTATRAV----SPDVAIVLDTACWAKNFDYGAANHRQIGNGPMLVLSDKSLIAPPKLTAWIETVAAEIG-IPLQADMF 278 (344)
T ss_pred HHHHHHhcc----CCCEEEEEeccCCCCCCCCCCCcccccCCCceEEEccCCcCCCHHHHHHHHHHHHHcC-CCcEEEec
Confidence 999887432 2345777775532 22322122 122 6777777766654311 11111122
Q ss_pred cCCCCCCCCchHHHhhh-cCCeEEEEeecCCCCCCCCcCCccCCCChhHHHHHHHHHHHHHHHH
Q 002959 301 ASGVFETATDFQVYTEV-AGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQT 363 (862)
Q Consensus 301 ~~g~ips~TD~~~F~~~-~GIPgld~a~~~~~~~YHT~~Dt~d~Id~~sLq~~g~~~l~ll~~L 363 (862)
...+||-..|... .|+|.+.+... .. +-||+. |.++.+.+.++.+.+.+++..+
T Consensus 279 ----~ggGTDa~~~~~~~~Giptv~ig~p-~r-y~Hs~~---E~v~~~D~~~~~~Ll~~~i~~l 333 (344)
T PRK09961 279 ----SNGGTDGGAVHLTGTGVPTVVMGPA-TR-HGHCAA---SIADCRDILQMIQLLSALIQRL 333 (344)
T ss_pred ----CCCcchHHHHHHhCCCCCEEEechh-hh-cccChh---heEEHHHHHHHHHHHHHHHHHc
Confidence 1246888877542 68999988654 22 348865 4566777777777666666544
No 67
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=98.94 E-value=7.4e-09 Score=115.08 Aligned_cols=125 Identities=22% Similarity=0.274 Sum_probs=94.7
Q ss_pred HHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEEEEcC
Q 002959 92 HVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILP 171 (862)
Q Consensus 92 ~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~g 171 (862)
.|++|.++ |-+.| .++++.+||.++|+++|. +++.+ ...|+++.. +
T Consensus 2 ~l~~lv~i-~s~s~--~e~~~~~~l~~~l~~~g~------~~~~~------------------------~~~~~~~~~-~ 47 (336)
T TIGR01902 2 LLKDLLEI-YSPSG--KEANAAKFLEEISKDLGL------KLIID------------------------DAGNFILGK-G 47 (336)
T ss_pred hHHHHhcC-CCCCc--chHHHHHHHHHHHHHcCC------EEEEC------------------------CCCcEEEEe-C
Confidence 47888886 33433 346899999999999983 33211 234777754 2
Q ss_pred CCCCCCCCCeEEEEeecCccCC------------CCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCCCCcc
Q 002959 172 KYASEAGENAILVSSHIDTVSA------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNG 239 (862)
Q Consensus 172 ~~~~~~~~~~Vll~AH~Dsv~~------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~G 239 (862)
.+.+.|++++|+|+||. ++|+.|+++|+|++|++++.|.+. ..+|+|++..+||.|..|
T Consensus 48 -----~~~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~----~~~i~~~~~~dEE~g~~G 118 (336)
T TIGR01902 48 -----DGHKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNEK----GIKVIVSGLVDEESSSKG 118 (336)
T ss_pred -----CCCceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHHHHHHHHHHHhC----CCcEEEEEEeCcccCCcc
Confidence 12468999999999973 589999999999999999999764 358999999999999999
Q ss_pred hHHHHhcCCccCCccEEEEeecCc
Q 002959 240 AHSFVTQHPWSTTIRVAVDLEAMG 263 (862)
Q Consensus 240 S~~fv~~h~~~~~v~a~iNLD~~G 263 (862)
++.+++++.. .++|..|..+
T Consensus 119 ~~~~~~~~~~----~~~ii~ept~ 138 (336)
T TIGR01902 119 AREVIDKNYP----FYVIVGEPSG 138 (336)
T ss_pred HHHHHhhcCC----CEEEEecCCC
Confidence 9999966432 2667777654
No 68
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=98.94 E-value=1e-08 Score=116.01 Aligned_cols=135 Identities=24% Similarity=0.229 Sum_probs=98.0
Q ss_pred HHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEEEEcCC
Q 002959 93 VKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILPK 172 (862)
Q Consensus 93 L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~g~ 172 (862)
|++|.+|. -+ |..+.++.+||.++|++++.. .++++. ...||++++.+.
T Consensus 2 l~~Lv~ip-S~--s~~e~~~~~~i~~~l~~~g~~-----~~~~~~-----------------------~~~nvva~~~~~ 50 (373)
T TIGR01900 2 LQQIMDIF-SP--SDHEGPIADEIEAALNNLELE-----GLEVFR-----------------------FGDNVLARTDFG 50 (373)
T ss_pred hHHHhCCC-CC--CchHHHHHHHHHHHHhhcccc-----CceEEE-----------------------ECCEEEEecCCC
Confidence 67888863 22 334567899999999988621 122221 123899987431
Q ss_pred CCCCCCCCeEEEEeecCccCC-------------------------------CCCCCCChhHHHHHHHHHHHHHh--ccC
Q 002959 173 YASEAGENAILVSSHIDTVSA-------------------------------GEGAGDCSSCVAVMLELARVMSQ--WAH 219 (862)
Q Consensus 173 ~~~~~~~~~Vll~AH~Dsv~~-------------------------------spGA~Dd~sgva~~LE~ar~L~~--~~~ 219 (862)
+.+.|++++|+|+||. ++|+.|+++|+|+||.+++.|.+ .+.
T Consensus 51 -----~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~ 125 (373)
T TIGR01900 51 -----KASRVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLDGRAPET 125 (373)
T ss_pred -----CCCeEEEeCccccccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHhhhcccc
Confidence 2457999999999952 37999999999999999999954 344
Q ss_pred CCCccEEEEEeCCcCCCC--cchHHHHhcCCccCCccEEEEeecCc
Q 002959 220 EFKNAVIFLFNTGEEEGL--NGAHSFVTQHPWSTTIRVAVDLEAMG 263 (862)
Q Consensus 220 ~p~~~I~Flf~~aEE~gl--~GS~~fv~~h~~~~~v~a~iNLD~~G 263 (862)
.++.+|.|+|..+||.|. .|+..++++++...+..++|..|..+
T Consensus 126 ~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~~~~~~~d~~iv~Ept~ 171 (373)
T TIGR01900 126 ELKHDLTLIAYDCEEVAAEKNGLGHIRDAHPDWLAADFAIIGEPTG 171 (373)
T ss_pred CCCCCEEEEEEecccccCCCCCHHHHHHhCcccccCCEEEEECCCC
Confidence 678899999999999863 69999997655333567777776443
No 69
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=98.93 E-value=9.2e-09 Score=119.17 Aligned_cols=124 Identities=19% Similarity=0.270 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHccCCCC----CC-----CHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccc
Q 002959 87 LEAMKHVKALTQLGPHA----VG-----SDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTL 157 (862)
Q Consensus 87 erA~~~L~~L~~igpr~----~G-----S~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~ 157 (862)
+.+.+.|++|.+|..-. .+ .++..++.+|+.++++++|. +++.
T Consensus 2 ~~~i~ll~~Lv~ipS~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~~---------------------- 53 (447)
T TIGR01887 2 DEILEDLKELIRIDSVEDLEEAKEGAPFGEGPKKALDKFLELAKRDGF------TTEN---------------------- 53 (447)
T ss_pred hHHHHHHHHhcCcCcCCCCCCCCCCCCcchhHHHHHHHHHHHHHHcCc------eEEE----------------------
Confidence 35678899999874321 11 12346789999999999872 2321
Q ss_pred cccccceEEEEEcCCCCCCCCCCeEEEEeecCccCC-------------------CCCCCCChhHHHHHHHHHHHHHhcc
Q 002959 158 IYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSA-------------------GEGAGDCSSCVAVMLELARVMSQWA 218 (862)
Q Consensus 158 ~Y~~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~-------------------spGA~Dd~sgva~~LE~ar~L~~~~ 218 (862)
..|++++.+.. ...+.|++++|+|+||. ++|+.|++.|+++++++++.|.+.+
T Consensus 54 ----~~~~~~~~~~~----~~~~~l~l~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~~ 125 (447)
T TIGR01887 54 ----VDNYAGYAEYG----QGEEYLGILGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKELG 125 (447)
T ss_pred ----ecCceEEEEeC----CCCCeEEEEeecCCCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcC
Confidence 11222222211 12357999999999974 4899999999999999999999888
Q ss_pred CCCCccEEEEEeCCcCCCCcchHHHHhc
Q 002959 219 HEFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (862)
Q Consensus 219 ~~p~~~I~Flf~~aEE~gl~GS~~fv~~ 246 (862)
.+++++|.|+|+.+||.|..|++.++.+
T Consensus 126 ~~~~~~i~~~~~~dEE~g~~g~~~~l~~ 153 (447)
T TIGR01887 126 LKLKKKIRFIFGTDEETGWACIDYYFEH 153 (447)
T ss_pred CCCCCcEEEEEECCcccCcHhHHHHHHh
Confidence 7889999999999999999999999854
No 70
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=98.92 E-value=1.7e-08 Score=111.76 Aligned_cols=193 Identities=17% Similarity=0.233 Sum_probs=130.9
Q ss_pred ccceEEEEEc-CCC--CCCCCCCeEEEEeecCccCC----CCCCCCChhHHHHHHHHHHHHHhc----cCCCCccEEEEE
Q 002959 161 DLNHIVLRIL-PKY--ASEAGENAILVSSHIDTVSA----GEGAGDCSSCVAVMLELARVMSQW----AHEFKNAVIFLF 229 (862)
Q Consensus 161 ~~~NVi~~i~-g~~--~~~~~~~~Vll~AH~Dsv~~----spGA~Dd~sgva~~LE~ar~L~~~----~~~p~~~I~Flf 229 (862)
.+.||.+++. |-. .+....+.|++.||||+.+. ++||+-||+|++++||++|.+++. ....++++.|+.
T Consensus 192 ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~l 271 (555)
T KOG2526|consen 192 KILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFIL 271 (555)
T ss_pred ccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEEE
Confidence 6899999998 321 11245689999999999764 589999999999999999999983 245688999999
Q ss_pred eCCcCCCCcchHHHHhcCC--ccCCccEEEEeecCcCCCCeeEEE-eCC--CHHHHHHHH----HHccCCCCcccccccc
Q 002959 230 NTGEEEGLNGAHSFVTQHP--WSTTIRVAVDLEAMGIGGRSALFQ-AGP--NLWAVENFA----AVAKYPSGQIIGQDLF 300 (862)
Q Consensus 230 ~~aEE~gl~GS~~fv~~h~--~~~~v~a~iNLD~~G~gG~~~lfq-~g~--~~~li~~~~----~~a~~p~~~~l~~eif 300 (862)
.+|--...+|++.|++-.. .++++..+|+||++|.+..+.... +.| +...+..+- ..+++-.-.+ ....
T Consensus 272 t~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdtig~~~s~l~mHvsKpP~dnt~i~qffr~l~svAek~~~~v--~~kh 349 (555)
T KOG2526|consen 272 TAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDTIGRKTSGLFMHVSKPPSDNTVIAQFFRRLNSVAEKKNIEV--VTKH 349 (555)
T ss_pred ccCccccccchhhhhhcchHHHHhcccEEEEhhhhccccCceEEEccCCCCcchHHHHHHHHhhhhchhcceEE--EEEe
Confidence 9999999999999996332 257999999999999985544333 333 233444332 2233222111 1111
Q ss_pred cCCCCCC-----CCchHHHhhhcCCeEEEEeecCCC--CCCCCcC-CccCCCChhHHHHHHHHHHH
Q 002959 301 ASGVFET-----ATDFQVYTEVAGLSGLDFAYTDKS--AVYHTKN-DRLDLLKPGSLQHLGENMLD 358 (862)
Q Consensus 301 ~~g~ips-----~TD~~~F~~~~GIPgld~a~~~~~--~~YHT~~-Dt~d~Id~~sLq~~g~~~l~ 358 (862)
+ .|.- .=.|..|.- ..+|+..+...... +.-.+.. |+...+|.++|-+....+.+
T Consensus 350 k--kInla~s~lAWEHErFsi-kR~pAfTLS~l~Sprdp~rnsi~~d~rsrldedtLi~ntRlIaE 412 (555)
T KOG2526|consen 350 K--KINLASSRLAWEHERFSI-KRMPAFTLSTLPSPRDPARNSILLDLRSRLDEDTLIDNTRLIAE 412 (555)
T ss_pred e--eEeeccchhhhhhhhhhh-hcccceeeccCCCCcchhhccccccchhhhhhhhhhhhhhHHHH
Confidence 1 1211 224666765 78999999866432 3344555 88889998888754444443
No 71
>PRK09864 putative peptidase; Provisional
Probab=98.89 E-value=1e-07 Score=106.95 Aligned_cols=149 Identities=20% Similarity=0.170 Sum_probs=97.0
Q ss_pred CCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCCCCcchHHHHhcCCccCCccEEEEeecCcC------------
Q 002959 197 AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGI------------ 264 (862)
Q Consensus 197 A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD~~G~------------ 264 (862)
|-||..||++++|++|.+.+ ++.+++|+|+.-||.|+.||+.-+.+.+ -..+|.+|..-+
T Consensus 173 alDnR~g~~~lle~l~~l~~----~~~~vy~v~TvQEEvGlrGA~~aa~~i~----PDiaIavDvt~~~d~p~~~~~~~~ 244 (356)
T PRK09864 173 ALDNRIGCAMMAELLQTVNN----PEITLYGVGSVEEEVGLRGAQTSAEHIK----PDVVIVLDTAVAGDVPGIDNIKYP 244 (356)
T ss_pred eCccHHHHHHHHHHHHHhhc----CCCeEEEEEEcchhcchHHHHHHHhcCC----CCEEEEEecccCCCCCCCcccccc
Confidence 88999999999999999964 7799999999999999999998774332 234677774421
Q ss_pred ----CCCee-EEEeCC--CHHHHHHHHHHccCCCCcccccccccCCCCCCCCchHHHhhh-cCCeEEEEeecCCCCCCCC
Q 002959 265 ----GGRSA-LFQAGP--NLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEV-AGLSGLDFAYTDKSAVYHT 336 (862)
Q Consensus 265 ----gG~~~-lfq~g~--~~~li~~~~~~a~~p~~~~l~~eif~~g~ips~TD~~~F~~~-~GIPgld~a~~~~~~~YHT 336 (862)
+|+.+ .+..|+ |+.+.+...+.|+. .+-..-.+.... ++||-..+... .|+|.+.++.-- . +-||
T Consensus 245 ~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~-~~Ip~Q~~~~~~----ggTDa~~i~~~~~Gvpt~~isiP~-R-Y~Hs 317 (356)
T PRK09864 245 LKLGQGPGLMLFDKRYFPNQKLVAALKSCAAH-NDLPLQFSTMKT----GATDGGRYNVMGGGRPVVALCLPT-R-YLHA 317 (356)
T ss_pred cccCCCCeEEEccCCccCCHHHHHHHHHHHHH-cCCCceEEEcCC----CCchHHHHHHhCCCCcEEEEeecc-C-cCCC
Confidence 23333 222344 78888877665532 111111122221 36777766542 789998776432 2 2588
Q ss_pred cCCccCCCChhHHHHHHHHHHHHHHHH
Q 002959 337 KNDRLDLLKPGSLQHLGENMLDFLLQT 363 (862)
Q Consensus 337 ~~Dt~d~Id~~sLq~~g~~~l~ll~~L 363 (862)
+.-. ++.+.+.++.+.+.+++..+
T Consensus 318 ~~e~---~~~~D~e~~~~Ll~~~~~~l 341 (356)
T PRK09864 318 NSGM---ISKADYDALLTLIRDFLTTL 341 (356)
T ss_pred cceE---eEHHHHHHHHHHHHHHHHhc
Confidence 7654 55666667777676666554
No 72
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=98.88 E-value=2.7e-08 Score=111.84 Aligned_cols=132 Identities=15% Similarity=0.196 Sum_probs=98.7
Q ss_pred HHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEEEEc
Q 002959 91 KHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRIL 170 (862)
Q Consensus 91 ~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~ 170 (862)
+.+++|.++ |.+.| .+.++.+||.++|+++|. +++.+ . . ...|+++++.
T Consensus 3 ~~~~~L~~i-ps~s~--~E~~~a~~l~~~l~~~g~------~~~~~--~-~-------------------~~~~vva~~~ 51 (363)
T TIGR01891 3 DIRRHLHEH-PELSF--EEFKTSSLIAEALESLGI------EVRRG--V-G-------------------GATGVVATIG 51 (363)
T ss_pred HHHHHHhcC-CCCCC--chHHHHHHHHHHHHHcCC------ceEec--C-C-------------------CCcEEEEEEe
Confidence 567889986 56554 446899999999999983 33321 0 0 3478999987
Q ss_pred CCCCCCCCCCeEEEEeecCccCCC-----------------CCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCc
Q 002959 171 PKYASEAGENAILVSSHIDTVSAG-----------------EGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGE 233 (862)
Q Consensus 171 g~~~~~~~~~~Vll~AH~Dsv~~s-----------------pGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aE 233 (862)
++ .+.+.|++++|+|+||.+ +|+ ..++|+++.+++.|.+.+.+++++|.|+|..+|
T Consensus 52 ~~----~~~~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l~g~G~---~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dE 124 (363)
T TIGR01891 52 GG----KPGPVVALRADMDALPIQEQTDLPYKSTNPGVMHACGH---DLHTAILLGTAKLLKKLADLLEGTVRLIFQPAE 124 (363)
T ss_pred CC----CCCCEEEEEeccCCCCcccccCCCcccCCCCceecCcC---HHHHHHHHHHHHHHHhchhhCCceEEEEEeecC
Confidence 63 234789999999999842 333 367899999999998866667889999999999
Q ss_pred CCCCcchHHHHhcCCccCCccEEEEeecC
Q 002959 234 EEGLNGAHSFVTQHPWSTTIRVAVDLEAM 262 (862)
Q Consensus 234 E~gl~GS~~fv~~h~~~~~v~a~iNLD~~ 262 (862)
|.+ .|++.+++++ +.+++.++|+.|..
T Consensus 125 E~~-~G~~~~~~~~-~~~~~d~~i~~e~~ 151 (363)
T TIGR01891 125 EGG-GGATKMIEDG-VLDDVDAILGLHPD 151 (363)
T ss_pred cCc-chHHHHHHCC-CCCCcCEEEEECCC
Confidence 986 7999998553 34566788887754
No 73
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=98.82 E-value=4.8e-08 Score=111.09 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEE
Q 002959 87 LEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIV 166 (862)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NVi 166 (862)
+++.+.+++|.++ |-+.+ .+.++.+||.++|+++|.+ .++.+ ...|++
T Consensus 13 ~~~~~~~~~lv~i-~s~s~--~e~~~~~~l~~~l~~~G~~-----~~~~~------------------------~~~n~~ 60 (395)
T TIGR03320 13 GDMIRFLRDLVAI-PSESG--DEKRVAERIKEEMEKLGFD-----KVEID------------------------PMGNVL 60 (395)
T ss_pred HHHHHHHHHHHcC-CCCCC--chHHHHHHHHHHHHHhCCc-----EEEEC------------------------CCCCEE
Confidence 6788899999986 33333 3468899999999999831 01111 235788
Q ss_pred EEEcCCCCCCCCCCeEEEEeecCccCC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCccE
Q 002959 167 LRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAV 225 (862)
Q Consensus 167 ~~i~g~~~~~~~~~~Vll~AH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I 225 (862)
+++ |. +.+.|++.+|+|+||. ++|+.|++.|+|++|.+++.|.+.+..++.+|
T Consensus 61 ~~~-g~-----~~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~~i 134 (395)
T TIGR03320 61 GYI-GH-----GPKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTL 134 (395)
T ss_pred EEe-CC-----CCcEEEEEecccccCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcCCCCCceE
Confidence 887 42 2367999999999984 38999999999999999999998776778899
Q ss_pred EEEEeCCcCCCC-cchHHHHhcCCccCCccEEEEeec
Q 002959 226 IFLFNTGEEEGL-NGAHSFVTQHPWSTTIRVAVDLEA 261 (862)
Q Consensus 226 ~Flf~~aEE~gl-~GS~~fv~~h~~~~~v~a~iNLD~ 261 (862)
+|++..+||.+. .|++.++.+... ...++|..|.
T Consensus 135 ~~~~~~dEE~~~g~~~~~~~~~~~~--~~d~~iv~ep 169 (395)
T TIGR03320 135 LVTGTVQEEDCDGLCWQYIIEEDGI--KPEFVVITEP 169 (395)
T ss_pred EEEecccccccCchHHHHHHHhcCC--CCCEEEEcCC
Confidence 999999999742 344556643221 2445555553
No 74
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=98.82 E-value=6.1e-08 Score=110.31 Aligned_cols=134 Identities=19% Similarity=0.252 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEE
Q 002959 87 LEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIV 166 (862)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NVi 166 (862)
+++.+.+++|.++ |-+.| .+.++.+||.++|+++|.+ .++.+ ...|++
T Consensus 13 ~~~~~~l~~Lv~i-ps~s~--~e~~~~~~l~~~l~~~g~~-----~~~~~------------------------~~~~v~ 60 (395)
T TIGR03526 13 GDMIRFLRDLVAI-PSESG--DEGRVALRIKQEMEKLGFD-----KVEID------------------------PMGNVL 60 (395)
T ss_pred HHHHHHHHHHhcC-CCCCC--chHHHHHHHHHHHHHcCCc-----eEEEc------------------------CCCcEE
Confidence 5778889999986 33333 3457889999999998731 01111 235788
Q ss_pred EEEcCCCCCCCCCCeEEEEeecCccCC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCccE
Q 002959 167 LRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAV 225 (862)
Q Consensus 167 ~~i~g~~~~~~~~~~Vll~AH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I 225 (862)
+++ |. ..+.|++.+|+|+||. ++|+.|++.|++++|.+++.|.+.+..++.++
T Consensus 61 ~~~-g~-----~~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~v 134 (395)
T TIGR03526 61 GYI-GH-----GPKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTL 134 (395)
T ss_pred EEe-CC-----CCCEEEEEeeccccCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcCCCCCceE
Confidence 887 42 2257999999999984 38999999999999999999998776677899
Q ss_pred EEEEeCCcCC-CCcchHHHHhcCCccCCccEEEEee
Q 002959 226 IFLFNTGEEE-GLNGAHSFVTQHPWSTTIRVAVDLE 260 (862)
Q Consensus 226 ~Flf~~aEE~-gl~GS~~fv~~h~~~~~v~a~iNLD 260 (862)
.|++..+||. +..|++.++++... +..++|..|
T Consensus 135 ~~~~~~dEE~~~g~~~~~~~~~~~~--~~d~~i~~e 168 (395)
T TIGR03526 135 LVTGTVQEEDCDGLCWQYIIEEDKI--KPEFVVITE 168 (395)
T ss_pred EEEEecccccCCcHhHHHHHhccCC--CCCEEEecC
Confidence 9999999994 44577777744322 234455545
No 75
>PRK08737 acetylornithine deacetylase; Provisional
Probab=98.81 E-value=4.1e-08 Score=110.83 Aligned_cols=131 Identities=20% Similarity=0.206 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHccCCCC-CCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccce
Q 002959 86 ELEAMKHVKALTQLGPHA-VGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNH 164 (862)
Q Consensus 86 ~erA~~~L~~L~~igpr~-~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~N 164 (862)
.+++.+.|++|++|.... .++.++.++.+|+.++|+ | ++++++. .. ....|
T Consensus 5 ~~~~~~~l~~Lv~i~s~~~~~~~~e~~~~~~l~~~l~--g------~~~~~~~--~~------------------~~~~n 56 (364)
T PRK08737 5 LESTLDHLQALVSFDTRNPPRAITTGGIFDYLRAQLP--G------FQVEVID--HG------------------AGAVS 56 (364)
T ss_pred HHHHHHHHHHHhCCCCcCCCCCCCcHHHHHHHHHHhC--C------CEEEEec--CC------------------CCceE
Confidence 457889999999985432 222234688999999996 3 2344431 00 03568
Q ss_pred EEEEEcCCCCCCCCCCeEEEEeecCccCC-------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCccE
Q 002959 165 IVLRILPKYASEAGENAILVSSHIDTVSA-------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAV 225 (862)
Q Consensus 165 Vi~~i~g~~~~~~~~~~Vll~AH~Dsv~~-------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I 225 (862)
++++ .|+ +.|++++|+|+||. ++|+.|+++|+|+||.+++. ++.+|
T Consensus 57 li~~-~g~-------~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~-------~~~~v 121 (364)
T PRK08737 57 LYAV-RGT-------PKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA-------GDGDA 121 (364)
T ss_pred EEEE-cCC-------CeEEEEeeeCCCCCCCCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc-------cCCCE
Confidence 8875 331 46999999999984 37999999999999999874 35689
Q ss_pred EEEEeCCcCCCC-cchHHHHhcCCccCCccEEEEeecC
Q 002959 226 IFLFNTGEEEGL-NGAHSFVTQHPWSTTIRVAVDLEAM 262 (862)
Q Consensus 226 ~Flf~~aEE~gl-~GS~~fv~~h~~~~~v~a~iNLD~~ 262 (862)
.|+|+.+||.|. .|++.++++.. +..++|..|..
T Consensus 122 ~~~~~~dEE~g~~~g~~~~~~~~~---~~~~~iv~Ept 156 (364)
T PRK08737 122 AFLFSSDEEANDPRCVAAFLARGI---PYEAVLVAEPT 156 (364)
T ss_pred EEEEEcccccCchhhHHHHHHhCC---CCCEEEEcCCC
Confidence 999999999987 69999986542 34556655543
No 76
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=98.68 E-value=1.3e-07 Score=105.52 Aligned_cols=158 Identities=18% Similarity=0.219 Sum_probs=122.9
Q ss_pred CCCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhccc-ccCCcceEEEEEEeccCCCcccccccccCccccccc
Q 002959 83 GFSELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKE-SKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSD 161 (862)
Q Consensus 83 ~fs~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~-~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~ 161 (862)
..+.||+++...+|++. |...|++++..-.++|+..|.++-. +.+++ |.+.+. +. ...| .
T Consensus 4 ~is~e~v~~lt~~LV~~-~SvtgT~GE~a~ad~l~~vL~~~pYFqehpe-----d~~~~p-----i~-------nDpy-g 64 (553)
T COG4187 4 RISSERVRALTLSLVSW-PSVTGTPGEGAFADRLLGVLGELPYFQEHPE-----DLWLQP-----IH-------NDPY-G 64 (553)
T ss_pred hhhHHHHHHHHHHHeec-cccCCCcccccHHHHHHHHHhcCchhhhChH-----hhcccC-----CC-------CCcc-c
Confidence 35689999999999994 7889999998889999999998752 22322 111111 10 1123 5
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEEeecCccCC------------------------------------------CCCCCC
Q 002959 162 LNHIVLRILPKYASEAGENAILVSSHIDTVSA------------------------------------------GEGAGD 199 (862)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~------------------------------------------spGA~D 199 (862)
..||.+-++|+ .+++.|++.+|+|+|.+ ++|+.|
T Consensus 65 R~nv~AlVrg~----~~k~tvvl~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~D 140 (553)
T COG4187 65 RRNVFALVRGG----TSKRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALD 140 (553)
T ss_pred cceeEEEEecC----CCCceEEEeeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchh
Confidence 78999999984 57789999999999975 389999
Q ss_pred ChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCCCCcchHHHHhcCCc-----cCCccEEEEeecCcC
Q 002959 200 CSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPW-----STTIRVAVDLEAMGI 264 (862)
Q Consensus 200 d~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~fv~~h~~-----~~~v~a~iNLD~~G~ 264 (862)
+++|.|+-|.+++.+++. ...+.+|.|+.+.+||....|.+.-+...+. .-...++||+|..+.
T Consensus 141 MKsGlav~la~L~~fa~~-~~~~GNlLf~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~ 209 (553)
T COG4187 141 MKSGLAVHLACLEEFAAR-TDRQGNLLFMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTSD 209 (553)
T ss_pred hhhhhHHHHHHHHHHhhC-CCCCCcEEEEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEeccccccC
Confidence 999999999999999986 5677899999999999988888776644332 236789999998876
No 77
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=98.62 E-value=2.8e-07 Score=98.79 Aligned_cols=171 Identities=18% Similarity=0.246 Sum_probs=129.9
Q ss_pred CCCeEEEEeecCccCCCCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCCCCcchHHHHhcCCc-cCCccEE
Q 002959 178 GENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPW-STTIRVA 256 (862)
Q Consensus 178 ~~~~Vll~AH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~fv~~h~~-~~~v~a~ 256 (862)
.++.||+++|..|.. -|+||-+|+|.+.-+++.|+.. +.+.+-.|+|.. +..||-.|+.+|.. .++++.-
T Consensus 177 ~~~eiLlst~lCHPS---maNdn~SG~all~~lak~l~~~--ktrysYRfvf~P----~TiGsi~wLsrnee~lkhvk~G 247 (435)
T COG4310 177 SKDEILLSTYLCHPS---MANDNLSGLALLTFLAKALKSL--KTRYSYRFVFAP----ETIGSIVWLSRNEECLKHVKHG 247 (435)
T ss_pred ccceeeeeecccChh---hccCccchHHHHHHHHHHHHhc--cceeeEEEEecc----cccchhhhHhcchhHHhhhhcc
Confidence 556799999999865 7999999999999999999974 578899999987 47899999988876 4799999
Q ss_pred EEeecCcCCCCeeEEEeCCCHHHHHHHHHH-ccCCCCcccccccccCCCCCCCCchHHHhhhcCCeEEEEe-------ec
Q 002959 257 VDLEAMGIGGRSALFQAGPNLWAVENFAAV-AKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFA-------YT 328 (862)
Q Consensus 257 iNLD~~G~gG~~~lfq~g~~~~li~~~~~~-a~~p~~~~l~~eif~~g~ips~TD~~~F~~~~GIPgld~a-------~~ 328 (862)
+.+-+.|.||....-++.-...+++..+.. .+|-. +.. .++ ..+|-++|-+.|.. ||+++- -+
T Consensus 248 lVlsClGD~g~~nykrtrrgna~iDki~~~tl~~~~-s~~--~~~--dF~p~G~DERQf~s----Pg~NLpvg~~~Rs~y 318 (435)
T COG4310 248 LVLSCLGDGGGPNYKRTRRGNALIDKIALHTLKHCG-SNF--KAA--DFLPYGSDERQFCS----PGFNLPVGGLQRSRY 318 (435)
T ss_pred eEEEEecCCCCccceeccccchHHHHHHHHHHhcCC-cCc--eee--ecccCCCchhhccC----CCcCCchhhhhHhhc
Confidence 999999998876666654434455544432 22322 111 122 25788999999986 555543 23
Q ss_pred CCCCCCCCcCCccCCCChhHHHHHHHHHHHHHHHHhcC
Q 002959 329 DKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASS 366 (862)
Q Consensus 329 ~~~~~YHT~~Dt~d~Id~~sLq~~g~~~l~ll~~La~~ 366 (862)
+..+-|||..|+.+.|+++.|...-+.++.++..+-+.
T Consensus 319 G~f~~YHtSaDnL~fi~~e~L~~s~~~~memI~~lE~N 356 (435)
T COG4310 319 GDFDGYHTSADNLDFISPEGLAGSFQMMMEMILNLEIN 356 (435)
T ss_pred CCCccccCccccccccCHHHHHHHHHHHHHHHHHHHhc
Confidence 44567999999999999998888778888887777654
No 78
>PLN02693 IAA-amino acid hydrolase
Probab=98.58 E-value=8.2e-07 Score=102.78 Aligned_cols=120 Identities=16% Similarity=0.246 Sum_probs=89.3
Q ss_pred HHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEEE
Q 002959 89 AMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLR 168 (862)
Q Consensus 89 A~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~ 168 (862)
+.+..++|-+ +|--|-++.++.+||.++|+++|. +++.. ....|++++
T Consensus 49 ~~~~r~~lh~---~PE~s~~E~~ta~~i~~~L~~~G~------~~~~~-----------------------~~~~~via~ 96 (437)
T PLN02693 49 MVRIRRKIHE---NPELGYEEFETSKLIRSELDLIGI------KYRYP-----------------------VAITGIIGY 96 (437)
T ss_pred HHHHHHHHHh---CCCCCCchHHHHHHHHHHHHHCCC------eeEec-----------------------CCCcEEEEE
Confidence 3444445555 344455557899999999999982 33220 035799998
Q ss_pred EcCCCCCCCCCCeEEEEeecCccCCC-----------CC---CCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcC
Q 002959 169 ILPKYASEAGENAILVSSHIDTVSAG-----------EG---AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEE 234 (862)
Q Consensus 169 i~g~~~~~~~~~~Vll~AH~Dsv~~s-----------pG---A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE 234 (862)
+.+ .+.+.|++.+|+|+||.. +| +.|.++++|+++.+++.|++.+.+++.+|.|+|..+||
T Consensus 97 ~g~-----~~g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdEE 171 (437)
T PLN02693 97 IGT-----GEPPFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHRHHLQGTVVLIFQPAEE 171 (437)
T ss_pred ECC-----CCCCEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCcccCCceEEEEEEEccc
Confidence 832 124789999999999852 12 67888899999999999998765667899999999999
Q ss_pred CCCcchHHHHhc
Q 002959 235 EGLNGAHSFVTQ 246 (862)
Q Consensus 235 ~gl~GS~~fv~~ 246 (862)
+..|++.++++
T Consensus 172 -~~~Ga~~~i~~ 182 (437)
T PLN02693 172 -GLSGAKKMREE 182 (437)
T ss_pred -chhhHHHHHHC
Confidence 55799999864
No 79
>PLN02280 IAA-amino acid hydrolase
Probab=98.56 E-value=1.3e-06 Score=102.29 Aligned_cols=133 Identities=19% Similarity=0.239 Sum_probs=91.5
Q ss_pred HHHHHHHHcc-CCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEEE
Q 002959 90 MKHVKALTQL-GPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLR 168 (862)
Q Consensus 90 ~~~L~~L~~i-gpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~ 168 (862)
.+.|++|.+. -.+|--+.++.++.+||.++|+++|. +++.. . ...|++++
T Consensus 96 ~~~l~~l~r~lh~~PEls~~E~~t~~~i~~~L~~~G~------~~~~~----~-------------------~~~~vva~ 146 (478)
T PLN02280 96 VAWLKSVRRKIHENPELAFEEYKTSELVRSELDRMGI------MYRYP----L-------------------AKTGIRAW 146 (478)
T ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCC------eEEec----C-------------------CCCEEEEE
Confidence 3445555442 11332344557899999999999983 33321 0 35699999
Q ss_pred EcCCCCCCCCCCeEEEEeecCccCCCC-----------C---CCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcC
Q 002959 169 ILPKYASEAGENAILVSSHIDTVSAGE-----------G---AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEE 234 (862)
Q Consensus 169 i~g~~~~~~~~~~Vll~AH~Dsv~~sp-----------G---A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE 234 (862)
+ |+ .+++.|++.+|+|+||... | +.|...++|++|.+++.|.+.+.+++.+|+|+|..+||
T Consensus 147 ~-g~----~~~~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd~~~A~~l~a~~~L~~~~~~~~g~V~~if~pdEE 221 (478)
T PLN02280 147 I-GT----GGPPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHDAHVAMLLGAAKILKSREHLLKGTVVLLFQPAEE 221 (478)
T ss_pred E-CC----CCCCEEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhccccCCceEEEEeccccc
Confidence 8 53 1237899999999998521 1 22345599999999999988766778899999999999
Q ss_pred CCCcchHHHHhcCCccCCccEEEE
Q 002959 235 EGLNGAHSFVTQHPWSTTIRVAVD 258 (862)
Q Consensus 235 ~gl~GS~~fv~~h~~~~~v~a~iN 258 (862)
.| .|++.++++ ...+++.+++-
T Consensus 222 ~g-~Ga~~li~~-g~~~~~d~~~~ 243 (478)
T PLN02280 222 AG-NGAKRMIGD-GALDDVEAIFA 243 (478)
T ss_pred cc-chHHHHHHC-CCCcCCCEEEE
Confidence 97 499999854 33333444443
No 80
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=98.18 E-value=6e-06 Score=90.75 Aligned_cols=133 Identities=23% Similarity=0.296 Sum_probs=85.8
Q ss_pred CCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCCCCcchHHHHhcCCccCCccEEEEeecC------cCC-----
Q 002959 197 AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAM------GIG----- 265 (862)
Q Consensus 197 A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD~~------G~g----- 265 (862)
+-||.+||++++|++|.+++. ..+.+++|+|+..||.|+.||+..+.+. +...+|.+|.. |..
T Consensus 132 alDdR~g~~~lle~l~~l~~~--~~~~~v~~v~tvqEEvG~rGA~~aa~~i----~PD~ai~vD~~~a~d~~~~~~~~~~ 205 (292)
T PF05343_consen 132 ALDDRAGCAVLLELLRELKEK--ELDVDVYFVFTVQEEVGLRGAKTAAFRI----KPDIAIAVDVTPAGDTPGSDEKEQG 205 (292)
T ss_dssp THHHHHHHHHHHHHHHHHTTS--S-SSEEEEEEESSCTTTSHHHHHHHHHH-----CSEEEEEEEEEESSSTTSTTTTSC
T ss_pred eCCchhHHHHHHHHHHHHhhc--CCCceEEEEEEeeeeecCcceeeccccc----CCCEEEEEeeeccCCCCCCchhhcc
Confidence 779999999999999999874 4569999999999999999999887542 23445555543 221
Q ss_pred ---CCeeEEE-eCC--CHHHHHHHHHHccCCCCcccccccccCCCCCCCCchHHHhh-hcCCeEEEEeecCCCCCCCCcC
Q 002959 266 ---GRSALFQ-AGP--NLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTE-VAGLSGLDFAYTDKSAVYHTKN 338 (862)
Q Consensus 266 ---G~~~lfq-~g~--~~~li~~~~~~a~~p~~~~l~~eif~~g~ips~TD~~~F~~-~~GIPgld~a~~~~~~~YHT~~ 338 (862)
|+.+... .+. ++.+.+...+.|+. .+-..-.+.+. ...||-..+.. ..|+|...++.--. +.||+.
T Consensus 206 lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~-~~Ip~Q~~~~~----~ggTDa~~~~~~~~Gi~t~~i~iP~r--y~Hs~~ 278 (292)
T PF05343_consen 206 LGKGPVIRVGDSSMIPNPKLVDKLREIAEE-NGIPYQREVFS----GGGTDAGAIQLSGGGIPTAVISIPCR--YMHSPV 278 (292)
T ss_dssp TTS-EEEEEEETTEESHHHHHHHHHHHHHH-TT--EEEEEES----SSSSTHHHHHTSTTSSEEEEEEEEEB--STTSTT
T ss_pred CCCCcEEEEccCCCCCCHHHHHHHHHHHHH-cCCCeEEEecC----CcccHHHHHHHcCCCCCEEEEecccc--cCCCcc
Confidence 3333222 222 67777776665532 11111122332 35788888865 25899988875422 379877
Q ss_pred CccC
Q 002959 339 DRLD 342 (862)
Q Consensus 339 Dt~d 342 (862)
-+.+
T Consensus 279 e~~~ 282 (292)
T PF05343_consen 279 EVID 282 (292)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6654
No 81
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=98.14 E-value=2.5e-05 Score=86.96 Aligned_cols=142 Identities=20% Similarity=0.351 Sum_probs=100.8
Q ss_pred CHHHHHHHHHHHHccCCCCCCCH----HHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcccccc
Q 002959 85 SELEAMKHVKALTQLGPHAVGSD----ALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYS 160 (862)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS~----~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~ 160 (862)
.-++..+.|++.++|.. ...-+ .-.+..+|+.++++++|.. ++. .+. |.....+ +. +.
T Consensus 14 ~~de~~~~L~e~v~iqs-vs~dp~~r~~v~rm~~~~~~~l~~lG~~------~~l--~dl--g~q~~~~----g~---~v 75 (473)
T KOG2276|consen 14 NKDEFINTLREAVAIQS-VSADPTKRLEVRRMADWLRDYLTKLGAP------LEL--VDL--GYQSLPD----GQ---IV 75 (473)
T ss_pred cHHHHHHHHHHHhcccc-cccCccccHHHHHHHHHHHHHHHHhCCc------eee--eec--ccCCCCC----Cc---cc
Confidence 45777889999998854 22222 2358899999999999932 222 111 1000000 00 11
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEEeecCccCC---------------------CCCCCCChhHHHHHHHHHHHHHhccC
Q 002959 161 DLNHIVLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAH 219 (862)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~ 219 (862)
...-++--..|+ +++++.|++-.|+|.+|. ++|+.||+.-|+.-+++++++.+.|.
T Consensus 76 ~lPpvvl~~~Gs---dp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~ 152 (473)
T KOG2276|consen 76 PLPPVVLGVLGS---DPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLGI 152 (473)
T ss_pred ccChhhhhcccC---CCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhCc
Confidence 112222222243 577899999999999986 49999999999999999999999999
Q ss_pred CCCccEEEEEeCCcCCCCcchHHHHhcC
Q 002959 220 EFKNAVIFLFNTGEEEGLNGAHSFVTQH 247 (862)
Q Consensus 220 ~p~~~I~Flf~~aEE~gl~GS~~fv~~h 247 (862)
.++.+|+|+|-+-||.|..|-...++..
T Consensus 153 ~lpvnv~f~~EgmEEsgS~~L~~l~~~~ 180 (473)
T KOG2276|consen 153 DLPVNVVFVFEGMEESGSEGLDELIEKE 180 (473)
T ss_pred cccceEEEEEEechhccCccHHHHHHHH
Confidence 9999999999999999999888877543
No 82
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00027 Score=80.77 Aligned_cols=187 Identities=14% Similarity=0.177 Sum_probs=126.6
Q ss_pred ccceEEEEEcCCCCC---CCCCCeEEEEeecCccC----CCCCCCCChhHHHHHHHHHHHHHhcc--CCCCccEEEEEeC
Q 002959 161 DLNHIVLRILPKYAS---EAGENAILVSSHIDTVS----AGEGAGDCSSCVAVMLELARVMSQWA--HEFKNAVIFLFNT 231 (862)
Q Consensus 161 ~~~NVi~~i~g~~~~---~~~~~~Vll~AH~Dsv~----~spGA~Dd~sgva~~LE~ar~L~~~~--~~p~~~I~Flf~~ 231 (862)
..+||..-+++...+ ..-.++++..+-+|+-. .++||..--.+....|.++|+|++.. ...+|++.|+|+.
T Consensus 156 ~~ynvws~l~pi~ts~tnk~~~~vvv~tarmdsrsfF~n~s~Ga~S~~~slv~~laaa~al~r~pai~nl~rnV~f~~f~ 235 (596)
T KOG2657|consen 156 HSYNVWSFLTPIPTSPTNKTISKVVVVTARMDSRSFFPNISVGAVSVLTSLVSVLAAARALKRQPAINNLNRNVFFAFFN 235 (596)
T ss_pred CCccceeccCccccccccCcCcceeeeeeecccccccccccCCccccchhHHHHHHHHHHhccCcccccccceeEEEEee
Confidence 567777776653221 12257899999999954 47899889999999999999998743 3578999999999
Q ss_pred CcCCCCcchHHHHhcC-----Ccc-CC---ccEEEEeecCcCC--CCeeEEEeCC-C----H---HHHHHHHHHcc-CCC
Q 002959 232 GEEEGLNGAHSFVTQH-----PWS-TT---IRVAVDLEAMGIG--GRSALFQAGP-N----L---WAVENFAAVAK-YPS 291 (862)
Q Consensus 232 aEE~gl~GS~~fv~~h-----~~~-~~---v~a~iNLD~~G~g--G~~~lfq~g~-~----~---~li~~~~~~a~-~p~ 291 (862)
+|-.+.+||.+++-+. |.+ ++ +..++.+-.+|-+ ++..++..+. . . ..++.+++... |++
T Consensus 236 get~~ylgS~r~~yeme~gk~pva~~s~~~iD~~LEiGqvg~~~s~kl~~~~d~~~~~sv~nqtld~L~~~ekSlrs~~f 315 (596)
T KOG2657|consen 236 GETLDYLGSGRAAYEMENGKFPVAIRSDNEIDYILEIGQVGVAKSRKLYVHVDGERYQSVKNQTLDVLDRIEKSLRSHAF 315 (596)
T ss_pred cceeeeccchhhhhHhhcCCCCeeeccCccchheeeecccccccCceEEEEeccchhhhHHHHHHHHHHHHHhcccccCe
Confidence 9999999999887543 222 33 8888888888853 3333454322 1 1 12333433211 222
Q ss_pred CcccccccccCCCCCCCCchHHHhhhcCCeEEEEeecC---CCCCCCCcCCccCCCChhHH
Q 002959 292 GQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTD---KSAVYHTKNDRLDLLKPGSL 349 (862)
Q Consensus 292 ~~~l~~eif~~g~ips~TD~~~F~~~~GIPgld~a~~~---~~~~YHT~~Dt~d~Id~~sL 349 (862)
. .+.++- ++..+|..+=++..|+..++.++-++-.+ ...+||+.+|+.|+|+..+-
T Consensus 316 ~-ll~~s~-~s~~lPPsSlqsFlR~dpn~saVvLad~~~~f~NKyYhSilDdaeNin~sy~ 374 (596)
T KOG2657|consen 316 D-LLKPSG-SSDRLPPSSLQSFLRADPNVSAVVLADYGKEFENKYYHSILDDAENINDSYE 374 (596)
T ss_pred e-eecCCC-CCCCCChHHHHHHHhhCCCcceEEeccCCchhhhhhhhhhhcchhhccchhh
Confidence 2 111221 22346777777766756889999998765 33569999999999997654
No 83
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=96.53 E-value=0.0057 Score=70.31 Aligned_cols=149 Identities=17% Similarity=0.125 Sum_probs=93.2
Q ss_pred CCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccc
Q 002959 84 FSELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLN 163 (862)
Q Consensus 84 fs~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~ 163 (862)
...++.++++.++++| ||. |..+++...|+.++.+..+..... |.. . .+ +. ...+.+ .
T Consensus 2 ~~~~~l~~~F~~~~kI-~~~--S~~e~~~~p~~~~~~k~~~~~v~d----E~~--~--i~--------~~--~~a~~~-~ 59 (414)
T COG2195 2 LKMERLLDRFLELVKI-PTQ--SKHEKAVAPSTVGQAKLLGLLVED----ELG--N--IG--------LK--KPATAG-E 59 (414)
T ss_pred cchHHHHHHHHHHeeC-CCC--CCCccccccccHHHHHHcCchhhh----hhc--c--cc--------cc--ccccCC-C
Confidence 3568999999999998 444 556677888888888888743210 110 0 00 00 000011 2
Q ss_pred e-EEEEEcCCCCCCCCCCeEEEEeecCccCC-----------------------------------------------CC
Q 002959 164 H-IVLRILPKYASEAGENAILVSSHIDTVSA-----------------------------------------------GE 195 (862)
Q Consensus 164 N-Vi~~i~g~~~~~~~~~~Vll~AH~Dsv~~-----------------------------------------------sp 195 (862)
| +.+++++.. +.-+.+-+.+|+|+++. .-
T Consensus 60 ~~~~~~L~a~~---d~V~~i~~~sh~Dt~~d~~~~~v~~~~l~~~~Gad~i~~~~~~a~L~~~~~P~~~~~t~~~ei~~d 136 (414)
T COG2195 60 NYVPAVLQAHL---DMVPEIGFISHHDTVPDPIGPNVNPQILKATLGADNIGLAIGLAVLSPEHFPLEVLLTGDEEITTD 136 (414)
T ss_pred CeeeEEeeccc---cccccccccccccccccccccccCCceeeeccCcchhhhhhHHhhcCcccCCceeeeecceEEecc
Confidence 2 333344421 12234555566666520 12
Q ss_pred CC----CCChhHHHHHHHHHHHHHhcc-CCCCccEEEEEeCCcCCCCcchHHHHhcCCccCCccEEEEee
Q 002959 196 GA----GDCSSCVAVMLELARVMSQWA-HEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLE 260 (862)
Q Consensus 196 GA----~Dd~sgva~~LE~ar~L~~~~-~~p~~~I~Flf~~aEE~gl~GS~~fv~~h~~~~~v~a~iNLD 260 (862)
|+ .||++|.+.++++++.+.+.. .-+..+|.+.|+++||.|+.|++.|.-. .-.+....++|
T Consensus 137 Ga~LLgaD~kAGia~i~~al~~~~~~~~~i~h~~i~~g~s~~Ee~g~rg~~~~~~a---~f~a~~ay~iD 203 (414)
T COG2195 137 GATLLGADDKAGIAEIMTALSVLREKHPEIPHGGIRGGFSPDEEIGGRGAANKDVA---RFLADFAYTLD 203 (414)
T ss_pred CccccCCcchhHHHHHHHHHHHHhhcCccccccCeEEEecchHHhhhhhhhhccHH---hhhcceeEecC
Confidence 33 488899999999999999643 3466789999999999999999988632 23456667777
No 84
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=96.45 E-value=0.17 Score=60.01 Aligned_cols=184 Identities=16% Similarity=0.188 Sum_probs=115.0
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEEeecCccCCCCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCCCCcch
Q 002959 161 DLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGA 240 (862)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS 240 (862)
+++|+.+.++... .++.+.+++.+-+++.. | .-|..|++.+|.++|.+++... .-++|+|++.++| ..|.
T Consensus 2 ~G~nvy~i~rapR--~d~tEaivl~~~~~~~~---~-~~n~~~v~l~lal~~~~~~~~~-wsKDii~l~~~~~---~~g~ 71 (504)
T PF04114_consen 2 SGTNVYGILRAPR--GDGTEAIVLVVPWRDSD---G-EYNAGGVALALALARYFRRQSY-WSKDIIFLFTDDE---LAGM 71 (504)
T ss_pred CceEEEEEEecCC--CCCceeEEEEEecCCCC---c-ccchhhHHHHHHHHHHhhhchh-hhccEEEEecCCc---chHH
Confidence 5789999887642 35678999999988653 3 4459999999999999998643 4799999999865 4688
Q ss_pred HHHHhcCCc--------------cCCccEEEEeecCcCCCCee-EEEeC-----CCHHHHHHHHHHccCC---CCcccc-
Q 002959 241 HSFVTQHPW--------------STTIRVAVDLEAMGIGGRSA-LFQAG-----PNLWAVENFAAVAKYP---SGQIIG- 296 (862)
Q Consensus 241 ~~fv~~h~~--------------~~~v~a~iNLD~~G~gG~~~-lfq~g-----~~~~li~~~~~~a~~p---~~~~l~- 296 (862)
++|++++-. +..+++.+|+|-.+.....+ +.-.| ||-.+++...+.+.+. .+....
T Consensus 72 ~awl~~Yh~~~~~~~~~~~l~~~~G~i~aAl~le~~~~~~~~v~i~~eG~NGqLPNLDL~N~~~~i~~~~gi~~~~~~~~ 151 (504)
T PF04114_consen 72 QAWLEAYHDSNTKGLSSSPLPLRAGSIQAALVLEYPSDSFSSVEIKYEGLNGQLPNLDLVNTVVRIAEKEGIPMGVSLHL 151 (504)
T ss_pred HHHHHHHhCCCCccccccCCCCCCcceeEEEEEEecCCCccEEEEEEecCCCCCCCchHHHHHHHHHHhcCCCccccccc
Confidence 899875411 23689999999888655443 22234 3445666554433221 100000
Q ss_pred --c-----c------------cccCCCCCCCCchHHHhhhcCCeEEEEeecCCCCCCCCcCCccCCCChhHHHHHHHHHH
Q 002959 297 --Q-----D------------LFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENML 357 (862)
Q Consensus 297 --~-----e------------if~~g~ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~Id~~sLq~~g~~~l 357 (862)
. + +.+.+.-.....|..|.+ .+|.++.+.-.... .+. .- ...+.|+.+-
T Consensus 152 ~~~~~~~~~~~~~~l~~l~~~~~~~a~g~p~g~H~~f~~-y~I~aiTl~~~~~~------~~~--~~---~~~~~gr~~E 219 (504)
T PF04114_consen 152 QPSDWHSNSDYESRLKTLLRGMLNQALGGPTGPHGAFLR-YRIDAITLRGVKST------GPG--PH---DFTAFGRILE 219 (504)
T ss_pred cccccccccchHHHHHHHHHHHHHhccCCCCCCchhhhh-cCccEEEEecccCC------CCC--Cc---CHHHHHHHHH
Confidence 0 0 001111113467888998 78999988322111 111 11 2345677777
Q ss_pred HHHHHHhcC
Q 002959 358 DFLLQTASS 366 (862)
Q Consensus 358 ~ll~~La~~ 366 (862)
.++|.+-|-
T Consensus 220 ~~~RslNNL 228 (504)
T PF04114_consen 220 GIFRSLNNL 228 (504)
T ss_pred HHHHHHHHH
Confidence 777777765
No 85
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=95.86 E-value=0.17 Score=58.13 Aligned_cols=125 Identities=18% Similarity=0.270 Sum_probs=89.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEEEEcCCCCCCCCCCe
Q 002959 102 HAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILPKYASEAGENA 181 (862)
Q Consensus 102 r~~GS~~n~~a~~yL~~~l~~lg~~~~~~~~ve~d~~~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~g~~~~~~~~~~ 181 (862)
+|--+-++.++.+||.+.|+++|- ++ ++. ++ ..+-|++.++|. .+.+.
T Consensus 24 ~PEL~f~E~~Ta~~i~~~L~~~g~------~~-~~~-----------~~----------~~TGvva~~~~g----~~g~t 71 (392)
T COG1473 24 HPELGFEEYRTAAYIAEKLEELGF------EV-VEV-----------GG----------GKTGVVATLKGG----KPGPT 71 (392)
T ss_pred CCccchhHHHHHHHHHHHHHHcCC------ee-Eec-----------cC----------CceEEEEEEcCC----CCCCE
Confidence 454556667999999999999982 21 110 00 246689999874 34459
Q ss_pred EEEEeecCccCC-----------CCC----CCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCCCCcchHHHHhc
Q 002959 182 ILVSSHIDTVSA-----------GEG----AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (862)
Q Consensus 182 Vll~AH~Dsv~~-----------spG----A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~fv~~ 246 (862)
|.|-|-||-.|. .+| -+=| .-.+++|-+++.|++....++.+|+|+|-.+||.+. |+..++++
T Consensus 72 IalRAD~DALPi~E~t~~~~~S~~~G~mHACGHD-~Hta~lLgaA~~L~~~~~~~~Gtv~~ifQPAEE~~~-Ga~~mi~~ 149 (392)
T COG1473 72 IALRADMDALPIQEETGLPFASKNPGVMHACGHD-GHTAILLGAALALAEHKDNLPGTVRLIFQPAEEGGG-GAKAMIED 149 (392)
T ss_pred EEEEeecccCccccccCCCcccCCCCCcccCCch-HHHHHHHHHHHHHHhhhhhCCcEEEEEecccccccc-cHHHHHhc
Confidence 999999999985 244 1112 237889999999998766889999999999999887 99999954
Q ss_pred CCccCC-ccEEEEeec
Q 002959 247 HPWSTT-IRVAVDLEA 261 (862)
Q Consensus 247 h~~~~~-v~a~iNLD~ 261 (862)
-..++ +.+++-+--
T Consensus 150 -G~~~~~vD~v~g~H~ 164 (392)
T COG1473 150 -GVFDDFVDAVFGLHP 164 (392)
T ss_pred -CCccccccEEEEecC
Confidence 33344 677666643
No 86
>PRK02256 putative aminopeptidase 1; Provisional
Probab=92.04 E-value=1.5 Score=51.65 Aligned_cols=155 Identities=14% Similarity=0.026 Sum_probs=87.6
Q ss_pred EEEEeecCccCCCCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCCCCcchHHHHh-------------cCC
Q 002959 182 ILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVT-------------QHP 248 (862)
Q Consensus 182 Vll~AH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~fv~-------------~h~ 248 (862)
-+++.+-|=+ +.++-||..||.+++|+++.+. .++..+++++++-||.|+.|++.-.. -.|
T Consensus 245 ~~~G~~~efI--~s~rLDNr~~~~~~leal~~~~----~~~~~~~~~~~dqEEVGs~ga~gA~s~~l~~~l~Ri~~~~~p 318 (462)
T PRK02256 245 RDVGLDRSLI--GAYGQDDRVCAYTSLEALLELE----NPEKTAVVLLVDKEEIGSEGNTGAQSRFFENFVAELLAKTEG 318 (462)
T ss_pred ceecccccee--eccccccHHHHHHHHHHHHhcc----cCCCeEEEEEEcccccCCcchhhhcchhHHHHHHHHHHhcCC
Confidence 3344444433 3688999999999999998653 35679999999999999977765441 011
Q ss_pred c--------cCCccEEEEeecCcCC------------------CCeeEEEe------CC---CHHHHHHHHHHccCCCCc
Q 002959 249 W--------STTIRVAVDLEAMGIG------------------GRSALFQA------GP---NLWAVENFAAVAKYPSGQ 293 (862)
Q Consensus 249 ~--------~~~v~a~iNLD~~G~g------------------G~~~lfq~------g~---~~~li~~~~~~a~~p~~~ 293 (862)
. +..-..+|.+|++=+. |..+-..+ ++ ++.+...+.+.++. .+
T Consensus 319 d~~~~~~~~~~~~S~~IS~Dvaha~hPn~~~~~~~~~~~~Lg~GpvIk~~d~~~~~y~t~~~~~~~~~~i~~iA~~-~~- 396 (462)
T PRK02256 319 NYSDLKLRRALANSKALSADVSAAFDPNYPSVHEKQNAAYLGYGVVFTKYTGSRGKYGANDANAEFVAEVRNLFNK-NN- 396 (462)
T ss_pred CcchHHHHHHHhccEEEEEeCCCCCCCCCCcccCcccCccCCCCcEEEEEcCCCCcccccCCCHHHHHHHHHHHHH-cC-
Confidence 0 0011377888865321 22221121 12 55565555444321 11
Q ss_pred ccccc-cc-cCCCCCCCCchHHHhhhcCCeEEEEeecCCCCCCCCcCCccCCCChh
Q 002959 294 IIGQD-LF-ASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPG 347 (862)
Q Consensus 294 ~l~~e-if-~~g~ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~Id~~ 347 (862)
+-.|. .. +...-.++||-.+.. ..|+|.+|+..-- -.-||+..+...-|..
T Consensus 397 Ip~Q~~~~~r~d~~~GgTig~~~s-~~Gi~tvdiGiP~--l~MHS~rE~~~~~D~~ 449 (462)
T PRK02256 397 VVWQTAELGKVDQGGGGTIAKFLA-NYGMEVIDCGVAL--LSMHSPFEIASKADIY 449 (462)
T ss_pred CCEEEEEeecCCCCCcChHHHHHc-CCCCcEEEechhh--hccccHHHHhhHHHHH
Confidence 11122 11 111113588844444 5899999986432 2259988777655544
No 87
>PRK02813 putative aminopeptidase 2; Provisional
Probab=91.89 E-value=0.63 Score=54.24 Aligned_cols=144 Identities=13% Similarity=0.093 Sum_probs=84.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCCCCc---chHH-----------HHhcCC-----ccCCccE
Q 002959 195 EGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLN---GAHS-----------FVTQHP-----WSTTIRV 255 (862)
Q Consensus 195 pGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~---GS~~-----------fv~~h~-----~~~~v~a 255 (862)
.++-||-+||.+++|+++.+.. +.++++++++-||.|+. ||+. -..... ..-.-..
T Consensus 230 s~~lDnr~~~~~~l~al~~~~~-----~~~~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~~~~~~~~~i~~s~ 304 (428)
T PRK02813 230 SGRLDNLSSCHAGLEALLAAAS-----DATNVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGGDREDFLRALARSF 304 (428)
T ss_pred EecchhHHHHHHHHHHHHhcCC-----CCeEEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcCchHHHHHhhCCCe
Confidence 4788999999999999987532 67999999999999998 8774 110000 1123356
Q ss_pred EEEeecCcCC------------------CCeeEEE-e-C--CCHHHHHHHHHHccCCCCcccccccccCCCCCCCCchHH
Q 002959 256 AVDLEAMGIG------------------GRSALFQ-A-G--PNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQV 313 (862)
Q Consensus 256 ~iNLD~~G~g------------------G~~~lfq-~-g--~~~~li~~~~~~a~~p~~~~l~~eif~~g~ips~TD~~~ 313 (862)
+|.+|++-+. |..+-+. . + +++.....+++.++. .+ +-.|.....+-.|++||-.+
T Consensus 305 ~IS~DvahA~hPn~~~~~~~~~~~~lg~GpvIk~~~~~~y~t~~~~~a~~~~ia~~-~~-Ip~Q~~v~~~d~~gGstig~ 382 (428)
T PRK02813 305 LISADMAHAVHPNYPEKHDPTHRPLLNKGPVIKINANQRYATDAESAAVFKLLCEK-AG-VPYQEFVNRSDMPCGSTIGP 382 (428)
T ss_pred EEEEeccCCCCCCCCCccCcccCccCCcCCeEEECCCCCcccCHHHHHHHHHHHHH-cC-CCEEEEEecCCCCCccHHHH
Confidence 6777755332 2221111 0 1 244444444443321 11 11122112223567899888
Q ss_pred Hhh-hcCCeEEEEeecCCCCCCCCcCCccCCCChh
Q 002959 314 YTE-VAGLSGLDFAYTDKSAVYHTKNDRLDLLKPG 347 (862)
Q Consensus 314 F~~-~~GIPgld~a~~~~~~~YHT~~Dt~d~Id~~ 347 (862)
+.. ..|+|.+|+..--- .-||+..+...-|..
T Consensus 383 i~~s~~Gi~tvdiGiP~l--~MHS~~E~~~~~D~~ 415 (428)
T PRK02813 383 ITAARLGIRTVDVGAPML--AMHSARELAGVKDHA 415 (428)
T ss_pred HHHhCCCCcEEEeChhhc--ccccHHHHccHHHHH
Confidence 875 47999999864322 259988877655544
No 88
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=90.12 E-value=2.6 Score=49.74 Aligned_cols=151 Identities=12% Similarity=0.049 Sum_probs=88.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcc-CCCCccEEEEEeCCcCCCCcchHHHHhcC-Cc-------cCCcc-----------
Q 002959 195 EGAGDCSSCVAVMLELARVMSQWA-HEFKNAVIFLFNTGEEEGLNGAHSFVTQH-PW-------STTIR----------- 254 (862)
Q Consensus 195 pGA~Dd~sgva~~LE~ar~L~~~~-~~p~~~I~Flf~~aEE~gl~GS~~fv~~h-~~-------~~~v~----------- 254 (862)
.++-||..||.+++|+++.+.... ..+....++++++-||.|..|++.-.... +. +.+..
T Consensus 247 s~rlDnr~~~~~~l~al~~~~~~~~~~~~~~~v~~~~d~EEVGs~ga~GA~s~~l~d~l~ri~~~~~~~~~~~~~~~~~~ 326 (465)
T PTZ00371 247 SPRLDNLGSSFCAFKALTEAVESLGENSSNIRMVCLFDHEEVGSSSSQGAGSSLLPDTIERILSSLSASNNSSDDSFAKL 326 (465)
T ss_pred EecchhHHHHHHHHHHHHhccccccCCCCceEEEEEECCcCCCCCcchhccccccHHHHHHHHHhhccccccchhHHHHH
Confidence 467899999999999998765310 11334455556999999998877644221 11 01111
Q ss_pred ----EEEEeecCcC------------------CCCeeEEE----eCCCHHHHHHHHHHccCCCCcccccccccCCCCCCC
Q 002959 255 ----VAVDLEAMGI------------------GGRSALFQ----AGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETA 308 (862)
Q Consensus 255 ----a~iNLD~~G~------------------gG~~~lfq----~g~~~~li~~~~~~a~~p~~~~l~~eif~~g~ips~ 308 (862)
.+|..|++-+ +|..+-+. ..+++.....+.+.++. .+ +-.|.....+-.|++
T Consensus 327 ~~~S~~IS~DvahA~hPn~~~~~d~~~~~~lg~GpvIk~~a~~~y~td~~~~a~i~~la~~-~~-Ip~Q~~~~~~d~~~G 404 (465)
T PTZ00371 327 MARSFLLSVDMAHAVHPNYPEKHQANHRPKFHEGIVIKYNANQRYATNGVTASLLKAIAKK-AN-IPIQEFVVKNDSPCG 404 (465)
T ss_pred HhccEEEEEecccccCCCCccccCCcCceeCCCCcEEEEeCCCCcccCHHHHHHHHHHHHH-cC-CCEEEEEecCCCCCc
Confidence 7788887533 12222122 11356666655554432 11 111221222235678
Q ss_pred CchHHHhh-hcCCeEEEEeecCCCCCCCCcCCccCCCChhHH
Q 002959 309 TDFQVYTE-VAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSL 349 (862)
Q Consensus 309 TD~~~F~~-~~GIPgld~a~~~~~~~YHT~~Dt~d~Id~~sL 349 (862)
||-.++.. ..|+|.+|+.--- -.-||+..+...-|...+
T Consensus 405 sTig~i~~s~~Gi~tvDiGiP~--l~MHS~rE~~~~~D~~~~ 444 (465)
T PTZ00371 405 STIGPILSSNLGIRTVDIGIPQ--LAMHSIREMCGVVDIYYL 444 (465)
T ss_pred chHHHHHHhCCCCcEEEechhh--cccccHHHHccHHHHHHH
Confidence 88888875 5899999986432 225999888776665544
No 89
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=59.56 E-value=32 Score=41.36 Aligned_cols=94 Identities=21% Similarity=0.304 Sum_probs=68.8
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEEeecCccCCCCCCCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcCCCCcch
Q 002959 161 DLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGA 240 (862)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~Vll~AH~Dsv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS 240 (862)
.+.||.+.+++.. .+..+.+++..-|+.-. |. |-.|++.++..++.+++.. --.++|+|++++++ ..|-
T Consensus 119 ~G~NvyGilRAPR--gdgtEsivl~vP~~~~~---~~--~~~~v~l~lsla~~f~r~~-yWsKDII~v~~d~~---~~g~ 187 (617)
T KOG3566|consen 119 SGENVYGILRAPR--GDGTESIVLVVPYGRSS---GS--NSASVALLLSLADYFSRWV-YWSKDIIFVFTDGP---ALGL 187 (617)
T ss_pred CCceEEEEEecCC--CCCcceEEEEEecccCC---Cc--chhHHHHHHHHHHHhcCCe-eecccEEEEEeCCc---cccH
Confidence 4899999997642 35667899988888653 33 4789999999999998753 35789999999984 5677
Q ss_pred HHHHhcCCc-----------------cCCccEEEEeecCcCC
Q 002959 241 HSFVTQHPW-----------------STTIRVAVDLEAMGIG 265 (862)
Q Consensus 241 ~~fv~~h~~-----------------~~~v~a~iNLD~~G~g 265 (862)
.+|++++.. +....+.+++|.-..+
T Consensus 188 ~AwLeaYhd~~s~~~~~~ep~~i~~ragal~aal~l~~se~~ 229 (617)
T KOG3566|consen 188 DAWLEAYHDILSLTGISVEPDEIQARAGALAAALVLEVSEKF 229 (617)
T ss_pred HHHHHHhhccccccccccccccccccccceeeEEEEEecccc
Confidence 788765321 1234678888877544
No 90
>PRK08126 hypothetical protein; Provisional
Probab=57.32 E-value=3e+02 Score=32.51 Aligned_cols=52 Identities=8% Similarity=0.032 Sum_probs=32.9
Q ss_pred eEEEEeecCccCCCCCC--CCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCc
Q 002959 181 AILVSSHIDTVSAGEGA--GDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGE 233 (862)
Q Consensus 181 ~Vll~AH~Dsv~~spGA--~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aE 233 (862)
.|.|.+|.|..|...|. ....-+.+=.-.+.+.|.+.|..+ ..|...-.++.
T Consensus 355 ~I~V~GHTD~~p~~s~~~~~N~~LS~~RA~aV~~~L~~~Gv~~-~ri~~~G~G~~ 408 (432)
T PRK08126 355 KVTVTGHTDNQPIRSAQFASNLVLSEKRAAQVAQMLQSAGVPA-SRLEAVGKGDA 408 (432)
T ss_pred eEEEEEecCCCCccCCccchHHHHHHHHHHHHHHHHHHcCCCH-HHeEEEEecCc
Confidence 69999999999864443 334455555666777777766543 34555544443
No 91
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=43.03 E-value=5.1e+02 Score=32.77 Aligned_cols=11 Identities=9% Similarity=0.051 Sum_probs=6.7
Q ss_pred CCCcEEEEEec
Q 002959 737 GAKRLTLAINA 747 (862)
Q Consensus 737 Gp~hmsl~I~p 747 (862)
..++..+|=|+
T Consensus 581 ~~~~~~iYeN~ 591 (843)
T PF09586_consen 581 ENGNYSIYENP 591 (843)
T ss_pred ccCCEEEEECC
Confidence 44556666666
No 92
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=41.85 E-value=5.4e+02 Score=28.73 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhccCCCCccEEEEEeCCcCCCCcchHHHHhcCCcc
Q 002959 204 VAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWS 250 (862)
Q Consensus 204 va~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~fv~~h~~~ 250 (862)
...+=|+++.|......--..+.+++...+|.-.+-...++..+|..
T Consensus 240 ~~~l~~aL~~l~~~~~~~l~a~evlWtP~~~gd~Ls~~ell~~yP~L 286 (289)
T PF07466_consen 240 AEDLREALRKLGSISSDRLLAVEVLWTPQAEGDTLSEDELLADYPDL 286 (289)
T ss_pred HHHHHHHHHHHhCCChhheeeEEEEECCCCCCCccCHHHHHHhCccc
Confidence 45566777777653222335789999999999999888888887764
No 93
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=40.59 E-value=3.5e+02 Score=31.20 Aligned_cols=42 Identities=10% Similarity=-0.104 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCcch---HHHHHHHHHHHHHHHHhcC
Q 002959 577 AVVSCLTLVYLLSYVHLSGAKGP---IAFASFILVGLSIIMVSSG 618 (862)
Q Consensus 577 a~~~~l~~~~l~p~i~~~~~~~~---~~~~l~~~~~~~~~~~~~~ 618 (862)
+...++..|++..++.+.+++.. --+.+++++++.+++...-
T Consensus 123 ~~~~~i~IG~l~~~~~~~~~k~~~~~~Yl~fs~~~~iiLia~i~l 167 (367)
T PF09971_consen 123 FIQFFIIIGFLALILKRIYKKIKFNIEYLAFSLVSLIILIASIVL 167 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 33555667888888877655533 3344445544444444433
No 94
>PRK07033 hypothetical protein; Provisional
Probab=38.45 E-value=7.3e+02 Score=29.26 Aligned_cols=54 Identities=11% Similarity=0.051 Sum_probs=34.7
Q ss_pred CeEEEEeecCccCCCCC--CCCChhHHHHHHHHHHHHHhccCCCCccEEEEEeCCcC
Q 002959 180 NAILVSSHIDTVSAGEG--AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEE 234 (862)
Q Consensus 180 ~~Vll~AH~Dsv~~spG--A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE 234 (862)
..|.|.+|-|+.+...+ ......+.+=.-.+++.|.+.|..++ .|...-.++.+
T Consensus 345 ~~I~V~GHTD~~~~~~~~~~~N~~LS~~RA~aV~~~L~~~Gi~~~-ri~~~G~G~~~ 400 (427)
T PRK07033 345 GNVLVTGYSDNVPIRTARFPSNWELSQARAQAVRALLAARLGQPE-RVTAEGRGDSD 400 (427)
T ss_pred CeEEEEEEeCCCCccccccchHHHHHHHHHHHHHHHHHHcCCCcc-eEEEEEECCCC
Confidence 46999999999875332 23445556666777888887766544 35555444433
No 95
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=35.88 E-value=70 Score=36.33 Aligned_cols=56 Identities=11% Similarity=0.199 Sum_probs=43.5
Q ss_pred CCCCchHHHhhhcCCeEEEEeecCCCCCCCCcCCccCCCChhHHHHHHHHHHHHHHHHhcC
Q 002959 306 ETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASS 366 (862)
Q Consensus 306 ps~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~Id~~sLq~~g~~~l~ll~~La~~ 366 (862)
.+.||...|.+ .|+|.+.+... +...-|++. |+++.+.+....+.+..++.+|++.
T Consensus 338 ~g~tD~~~~~~-~gip~v~~Gpg-~~~~~H~~~---E~i~~~~l~~~~~i~~~~i~~l~~~ 393 (394)
T PRK08651 338 LGGTDARFFGA-KGIPTVVYGPG-ELELAHAPD---EYVEVKDVEKAAKVYEEVLKRLAKG 393 (394)
T ss_pred cCcccHHHHhh-CCCcEEEECCC-ChHhcCCCC---ceeEHHHHHHHHHHHHHHHHHhhcC
Confidence 46899999987 89999765332 223567755 6888999999999999999998864
No 96
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=32.19 E-value=15 Score=40.26 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhc
Q 002959 474 FLQWLILLALGNYYK 488 (862)
Q Consensus 474 ~~~~~~l~~~~t~~~ 488 (862)
+++.+++.+++..+.
T Consensus 59 AvvliiIIiIImlF~ 73 (381)
T PF05297_consen 59 AVVLIIIIIIIMLFK 73 (381)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 97
>PF05421 DUF751: Protein of unknown function (DUF751); InterPro: IPR008470 This family, Ycf33, contains several plant, cyanobacterial and algal chlorplast encoded proteins of unknown function. The family is exclusively found in phototrophic organisms and may therefore play a role in photosynthesis.
Probab=31.95 E-value=1.6e+02 Score=25.26 Aligned_cols=30 Identities=17% Similarity=0.012 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHH
Q 002959 575 VIAVVSCLTLVYLLSYVHLSGAKGPIAFAS 604 (862)
Q Consensus 575 ~~a~~~~l~~~~l~p~i~~~~~~~~~~~~l 604 (862)
+++.+..+....+-|+..++|+|..-+...
T Consensus 12 ~is~~lG~~~~~~~pl~~llk~p~tai~~i 41 (61)
T PF05421_consen 12 FISVMLGLFLIIFEPLKPLLKNPVTAIALI 41 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 344445566788999999999887655544
No 98
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=31.26 E-value=16 Score=40.08 Aligned_cols=11 Identities=9% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHhhhceeeec
Q 002959 436 LTCLSAILMLY 446 (862)
Q Consensus 436 ~~~~~~~l~wy 446 (862)
+.++..++.|-
T Consensus 89 mi~lLv~~L~t 99 (381)
T PF05297_consen 89 MIVLLVSMLWT 99 (381)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 33344444553
No 99
>PRK08596 acetylornithine deacetylase; Validated
Probab=29.24 E-value=1e+02 Score=35.69 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=44.8
Q ss_pred CCCCchHHHhhhcCCeEEEEeecCCCCCCCCcCCccCCCChhHHHHHHHHHHHHHHHHhcC
Q 002959 306 ETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASS 366 (862)
Q Consensus 306 ps~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~Id~~sLq~~g~~~l~ll~~La~~ 366 (862)
++.||...|.+ .|+|++.+.... ....|++. |+++.+.+.+..+.+..++..+...
T Consensus 363 ~g~tD~~~~~~-~gip~v~~Gpg~-~~~~H~~~---E~v~i~~~~~~~~~~~~~l~~~~~~ 418 (421)
T PRK08596 363 TTVTDGGWFAE-FGIPAVIYGPGT-LEEAHSVN---EKVEIEQLIEYTKVITAFIYEWCHT 418 (421)
T ss_pred eeecchhhhhh-cCCCEEEECCCc-ccccCCCC---ceEEHHHHHHHHHHHHHHHHHHhCC
Confidence 46789999988 899998776533 34578855 7889999999999999999888754
No 100
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=28.65 E-value=67 Score=26.14 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=23.7
Q ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 002959 590 YVHLSGAKGPIAFASFILVGLSIIMVSSGIIPPFSE 625 (862)
Q Consensus 590 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~fPy~~ 625 (862)
...+++|.|.-+.++.++.++.++++..+...||.+
T Consensus 8 ~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~~~ 43 (56)
T PF12911_consen 8 AWRRFRRNKLAVIGLIILLILVLLAIFAPFISPYDP 43 (56)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 345677777777777666665565566666678853
No 101
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=28.55 E-value=84 Score=28.84 Aligned_cols=10 Identities=30% Similarity=0.361 Sum_probs=5.1
Q ss_pred HHhhhhhccc
Q 002959 59 SYGVYYYQYE 68 (862)
Q Consensus 59 ~~~v~~~~~~ 68 (862)
+|+++.+...
T Consensus 46 ~WiVvyYi~~ 55 (87)
T PF06781_consen 46 LWIVVYYISG 55 (87)
T ss_pred HHHhhhhccc
Confidence 5555555443
No 102
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=27.84 E-value=3.9e+02 Score=24.94 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=17.7
Q ss_pred HhhccCCCCCchHHHHHH----HHhHHHHHHHHHHHHHHHHHHHh
Q 002959 511 ATLTPVRLTRPLKLATLL----LGLAVPVLVSAGNIIRLANVLVA 551 (862)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~----~~~~~P~~~~~~l~~~~~~~~~p 551 (862)
....|+||.+...++... ...++|++-. +..+..++.|
T Consensus 65 l~vRRlhD~G~sg~~~~~~~~~~~~~ip~i~~---i~~l~l~~~p 106 (120)
T PF05656_consen 65 LTVRRLHDIGRSGWWILLPFVLLALLIPIIGI---IVLLYLLFLP 106 (120)
T ss_pred HHhhhhhcCCCCCchHHHHHHHHHHHHHHHHH---HHHHHHHhcC
Confidence 344567877654333322 2256663332 3334444555
No 103
>PRK07522 acetylornithine deacetylase; Provisional
Probab=27.77 E-value=1.3e+02 Score=33.84 Aligned_cols=74 Identities=12% Similarity=0.079 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHccCCCCcccccccccCCCCCCCCchHHHhhhcCCeEEEEeecCCCCCCCCcCCccCCCChhHHHHHHHH
Q 002959 276 NLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGEN 355 (862)
Q Consensus 276 ~~~li~~~~~~a~~p~~~~l~~eif~~g~ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~Id~~sLq~~g~~ 355 (862)
+..+++.++++...+.. . ..+..||-..|.. .|+|.+.+.... ....||+. |+++.+.+....+.
T Consensus 311 ~~~~v~~~~~~~~~~~~-----~-----~~~~~td~~~~~~-~gip~v~~Gpg~-~~~~H~~~---E~i~i~~l~~~~~~ 375 (385)
T PRK07522 311 DAAAARLVRALTGDNDL-----R-----KVAYGTEAGLFQR-AGIPTVVCGPGS-IEQAHKPD---EFVELAQLAACEAF 375 (385)
T ss_pred CcHHHHHHHHHhCCCCc-----c-----eEeeecchHHhcc-CCCCEEEECCCC-hhhCCCCC---ccccHHHHHHHHHH
Confidence 34577777665433211 0 1234689999986 899998665332 23679865 68889999999899
Q ss_pred HHHHHHHHh
Q 002959 356 MLDFLLQTA 364 (862)
Q Consensus 356 ~l~ll~~La 364 (862)
+..++..+|
T Consensus 376 ~~~~~~~~~ 384 (385)
T PRK07522 376 LRRLLASLA 384 (385)
T ss_pred HHHHHHHHh
Confidence 998888776
No 104
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=26.95 E-value=5.6e+02 Score=28.80 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=11.3
Q ss_pred chHHHHHHHHhHHHHHHH
Q 002959 521 PLKLATLLLGLAVPVLVS 538 (862)
Q Consensus 521 ~~~~~~~~~~~~~P~~~~ 538 (862)
..+....++.+.+|+...
T Consensus 155 ~~~~~~~l~l~alpl~~v 172 (325)
T PF11992_consen 155 LLRRALKLLLQALPLALV 172 (325)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344566667777776654
No 105
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=24.05 E-value=1e+02 Score=35.53 Aligned_cols=58 Identities=9% Similarity=0.042 Sum_probs=44.6
Q ss_pred CCCCCchHHHhhhcCCeEEEEeecCCCCCCCCcCCccCCCChhHHHHHHHHHHHHHHHHhcC
Q 002959 305 FETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASS 366 (862)
Q Consensus 305 ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~Id~~sLq~~g~~~l~ll~~La~~ 366 (862)
.++.||...|+. .|+|.+.+.+...+..-|++. |+++.+.+....+.+..++.++++.
T Consensus 352 ~~g~tDa~~~~~-~gip~v~~g~G~~~~~aH~~n---E~i~i~~~~~~~~~~~~~~~~~~~~ 409 (410)
T PRK06133 352 TGGGTDAAFAAG-SGKAAVLEGFGLVGFGAHSND---EYIELNSIVPRLYLLTRMIMELSRD 409 (410)
T ss_pred CCCCchHHHHHh-cCCCceEecccCCCCCCCCCC---cEEEcccHHHHHHHHHHHHHHhhcC
Confidence 356899999987 799988755444344578876 6888888888888999998888753
No 106
>PRK07338 hypothetical protein; Provisional
Probab=22.27 E-value=1.4e+02 Score=33.99 Aligned_cols=79 Identities=18% Similarity=0.129 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHccCCCCcccccccccCCCCCCCCchHHHhhhcCCeEEE-EeecCCCCCCCCcCCccCCCChhHHHHHHH
Q 002959 276 NLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLD-FAYTDKSAVYHTKNDRLDLLKPGSLQHLGE 354 (862)
Q Consensus 276 ~~~li~~~~~~a~~p~~~~l~~eif~~g~ips~TD~~~F~~~~GIPgld-~a~~~~~~~YHT~~Dt~d~Id~~sLq~~g~ 354 (862)
++.+++.++++.+. .+...... ..++.||-..|.. .|+|.++ +... +...|++. |+++.+.+....+
T Consensus 321 ~~~l~~~~~~~~~~-~g~~~~~~-----~~~g~tDa~~~~~-~giP~v~~~Gpg--~~~~H~~~---E~v~i~~l~~~~~ 388 (402)
T PRK07338 321 QQRLFEAVQACGAA-LGLTIDWK-----DSGGVCDGNNLAA-AGLPVVDTLGVR--GGNIHSED---EFVILDSLVERAQ 388 (402)
T ss_pred hHHHHHHHHHHHHH-cCCCcccc-----cCCccchHHHHhh-cCCCeEeccCCC--CCCCCCcc---ceEehhhHHHHHH
Confidence 34577776664322 22211111 1356899999987 8999996 3332 33468865 6888999999999
Q ss_pred HHHHHHHHHhcC
Q 002959 355 NMLDFLLQTASS 366 (862)
Q Consensus 355 ~~l~ll~~La~~ 366 (862)
.+..++..++..
T Consensus 389 ~~~~~l~~~~~~ 400 (402)
T PRK07338 389 LSALILMRLAQG 400 (402)
T ss_pred HHHHHHHHHhcC
Confidence 999998888754
No 107
>PRK10927 essential cell division protein FtsN; Provisional
Probab=21.76 E-value=2.1e+02 Score=32.26 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHc
Q 002959 86 ELEAMKHVKALTQ 98 (862)
Q Consensus 86 ~erA~~~L~~L~~ 98 (862)
.|+=|.++++|-+
T Consensus 79 PEErWrYIKELEn 91 (319)
T PRK10927 79 PEERWRYIKELES 91 (319)
T ss_pred cchhhHHHHHHhc
Confidence 3566999999976
No 108
>COG3090 DctM TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]
Probab=21.16 E-value=9e+02 Score=24.75 Aligned_cols=57 Identities=12% Similarity=-0.023 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 002959 537 VSAGNIIRLANVLVATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAK 597 (862)
Q Consensus 537 ~~~~l~~~~~~~~~p~~gR~~~~~~~~P~~~~d~~ia~~~a~~~~l~~~~l~p~i~~~~~~ 597 (862)
+..++++.-...+.... +.+....+.|.| .+=+.+...++++++-++..++...++.
T Consensus 102 f~~~l~~~~~~~~~~~~-~~~~~al~ip~~---~~y~alpi~~~l~~l~~l~~l~~~~~~~ 158 (177)
T COG3090 102 FFLLLIWGGWKLAAINW-SQGSPALGIPMG---WVYLALPIGGVLMALRFLERLIRLLRGK 158 (177)
T ss_pred HHHHHHHHHHHHHHHHH-hccCcccCccHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333333333333332 334434567763 4444444455556666777777766544
Done!