BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002960
(862 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 81 DPYVTVVVPQA--TVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFGAQII 137
DPYV + + + RTR N PVWNE F L N LEI + D + + +
Sbjct: 28 DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETL 87
Query: 138 GTAAIPAHTIATGE 151
GTA ++ GE
Sbjct: 88 GTATFTVSSMKVGE 101
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 81 DPYVTVVVPQA--TVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFGAQII 137
DPYV + + + RTR N PVWNE F L N LEI + D + + +
Sbjct: 43 DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETL 102
Query: 138 GTAAIPAHTIATGE 151
GTA ++ GE
Sbjct: 103 GTATFTVSSMKVGE 116
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 81 DPYVTVVVPQA--TVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFGAQII 137
DPYV + + + RTR N PVWNE F L N LEI + D + + +
Sbjct: 43 DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETL 102
Query: 138 GTAAIPAHTIATGE 151
GTA ++ GE
Sbjct: 103 GTATFTVSSMKVGE 116
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 81 DPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDD 130
DPYVTV V + T RT+ + + PVW E+F+ + ++++V D+D
Sbjct: 39 DPYVTVQVGK-TKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDED 87
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 81 DPYVTVVV--PQATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFGAQ 135
DPYV V + + T+V + + PV+NE F + + L + V D D F
Sbjct: 64 DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKH 123
Query: 136 -IIGTAAIPAHTIATGELISRWYD 158
IIG +P +T+ G + W D
Sbjct: 124 DIIGEFKVPMNTVDFGHVTEEWRD 147
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 81 DPYVTVVV--PQATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFGAQ 135
DPYV V + + T+V + + PV+NE F + + L + V D D F
Sbjct: 56 DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKH 115
Query: 136 -IIGTAAIPAHTIATGELISRWYD 158
IIG +P +T+ G + W D
Sbjct: 116 DIIGEFKVPMNTVDFGHVTEEWRD 139
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 81 DPYVTV-VVPQATVA---RTRVLKNSQEPVWNE----HFNIPLAHPLSNLEIQVKDDDVF 132
DPYV + ++P A+ + RT+ L+N++ PVWNE H L I V D+D F
Sbjct: 51 DPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKF 110
Query: 133 G 133
G
Sbjct: 111 G 111
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 81 DPYVTVVV--PQATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFGAQ 135
DPYV V + + T+V + + PV+NE F + + L + V D D F
Sbjct: 56 DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKH 115
Query: 136 -IIGTAAIPAHTIATGELISRWYD 158
IIG +P +T+ G + W D
Sbjct: 116 DIIGEFKVPMNTVDFGHVTEEWRD 139
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 81 DPYVTV-VVPQATVA---RTRVLKNSQEPVWNE----HFNIPLAHPLSNLEIQVKDDDVF 132
DPYV + ++P A+ + RT+ L+N++ PVWNE H L I V D+D F
Sbjct: 49 DPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKF 108
Query: 133 G-AQIIG 138
G + IG
Sbjct: 109 GHNEFIG 115
>pdb|3HSI|A Chain A, Crystal Structure Of Phosphatidylserine Synthase
Haemophilus Influenzae Rd Kw20
pdb|3HSI|B Chain B, Crystal Structure Of Phosphatidylserine Synthase
Haemophilus Influenzae Rd Kw20
pdb|3HSI|C Chain C, Crystal Structure Of Phosphatidylserine Synthase
Haemophilus Influenzae Rd Kw20
Length = 458
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 712 HAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQIYGYRKS 771
H KG+ VDD Y+++ N+N R A D E + Y P +++ QI + K
Sbjct: 364 HLKGVWVDDRYILLTGNNLNPR--AWRLDAENGLLIYDPQQQLLAQVEKEQNQIRQHTKV 421
Query: 772 LWSEHLGMLDNCFEEPESLDCIRK 795
L +H L+ + PE + + K
Sbjct: 422 L--KHYTELEELNQYPEPVQKLLK 443
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 6/108 (5%)
Query: 81 DPYVTVVV--PQATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFGAQ 135
DPYV V + + T+V + + PV+NE F + + L + V D D F
Sbjct: 41 DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKH 100
Query: 136 -IIGTAAIPAHTIATGELISRWYDXXXXXXXXXXXXXXXQLELKFTPC 182
IIG +P +T+ G + W D L++ P
Sbjct: 101 DIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPT 148
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 81 DPYVTV-VVP-QATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFGAQ 135
DPYV V ++P + T+V + + PV+NE F + + L + V D D F
Sbjct: 39 DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKH 98
Query: 136 -IIGTAAIPAHTIATGELISRWYD 158
IIG +P +T+ G + W D
Sbjct: 99 DIIGEFKVPMNTVDFGHVTEEWRD 122
>pdb|2FK9|A Chain A, Human Protein Kinase C, Eta
Length = 157
Score = 33.5 bits (75), Expect = 0.55, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 81 DPYVTVVVPQATVARTRVLKNSQEPVWNEHF 111
DPY+TV V Q V +T + + +P +NE F
Sbjct: 61 DPYLTVSVDQVRVGQTSTKQKTNKPTYNEEF 91
>pdb|2EYL|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T82s
Length = 149
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
S K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRSDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1ENC|A Chain A, Crystal Structures Of The Binary Ca2+ And Pdtp Complexes
And The Ternary Complex Of The Asp 21->glu Mutant Of
Staphylococcal Nuclease. Implications For Catalysis And
Ligand Binding
Length = 149
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 27/138 (19%)
Query: 649 QTMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DK 697
+T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 21 ETVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDK 78
Query: 698 VSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARK 757
+ K R + Y++A G +V++ V G A + Y+P++T +
Sbjct: 79 GQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQH 124
Query: 758 LKHPHGQIYGYRKSLWSE 775
L+ Q + ++WSE
Sbjct: 125 LRKSEAQAKKEKLNIWSE 142
>pdb|2F0M|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V23lI72V
Length = 149
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNGDKV------- 698
T+++MY R + VD HP+ + Y G A + N KV
Sbjct: 22 TLKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKVEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0E|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant V23l
Length = 149
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TLKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0L|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V23lI72L
Length = 149
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TLKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKLEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0D|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant I92v
Length = 149
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + YV+A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYVYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2EY5|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T41s
Length = 149
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD+ HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDSPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1KDB|A Chain A, Stabilization Of A Strained Protein Loop Conformation
Through Protein Engineering
Length = 149
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 27/138 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYEPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSEH 776
+ Q + ++WSE+
Sbjct: 126 RKSEAQAKKEKLNIWSEN 143
>pdb|1F2M|A Chain A, Simplification Of A Protein Loop In Staphylococcal
Nuclease
Length = 149
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + +Y P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------AYAPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1F2Y|A Chain A, Simplification Of A Protein Loop In Staphylococcal
Nuclease
Length = 149
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKV--------------AAVYAPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1NSN|S Chain S, The Crystal Structure Of Antibody N10-Staphylococcal
Nuclease Complex At 2.9 Angstroms Resolution
Length = 149
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 27/138 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSEH 776
+ Q + ++WSE+
Sbjct: 126 RKSEAQAKKEKLNIWSEN 143
>pdb|2EYH|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T62s
Length = 149
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFSKKMVENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1STA|A Chain A, Accommodation Of Insertion Mutations On The Surface And In
The Interior Of Staphylococcal Nuclease
Length = 151
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 24 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 81
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 82 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 127
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 128 RKSEAQAKKEKLNIWSE 144
>pdb|2F0V|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V23lV66LI72L
Length = 149
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TLKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMLENAKKLEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0J|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant I72v
Length = 149
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNGDKV------- 698
T+++MY R + VD HP+ + Y G A + N KV
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKVEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 81 DPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPL-AHPL---SNLEIQVKDDDVFGA-Q 135
DP V+V+ +V N PVWNE L PL S+L I VKD + G +
Sbjct: 28 DPIVSVIFKDEKKKTKKV-DNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNK 86
Query: 136 IIGTAAI 142
+IGTA +
Sbjct: 87 LIGTATV 93
>pdb|2SNS|A Chain A, Staphylococcal Nuclease. Proposed Mechanism Of Action
Based On Structure Of Enzyme-Thymidine
3(Prime),5(Prime)-Biphosphate-Calcium Ion Complex At
1.5-Angstroms Resolution
Length = 149
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 27/138 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNGDKV------- 698
T+++MY R + VD HP+ + Y G A + N K+
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFNKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSEH 776
+ Q + ++WSE+
Sbjct: 126 RKSEAQAKKEKLNIWSEN 143
>pdb|2F0I|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant I72l
Length = 149
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKLEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1EY7|A Chain A, Structure Of S. Nuclease Stabilizing Mutant S128a
Length = 149
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKAEAQAKKEKLNIWSE 142
>pdb|2F0S|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V66lI92V
Length = 149
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMLENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + YV+A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYVYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2EYF|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T44v
Length = 149
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPEVKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2EY6|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T41v
Length = 149
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDVPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1EY0|A Chain A, Structure Of Wild-Type S. Nuclease At 1.6 A Resolution
pdb|1EYD|A Chain A, Structure Of Wild-Type S. Nuclease At 1.7 A Resolution
pdb|1SNC|A Chain A, The Crystal Structure Of The Ternary Complex Of
Staphylococcal Nuclease, Ca2+, And The Inhibitor PdTp,
Refined At 1.65 Angstroms
pdb|1STG|A Chain A, Two Distinctly Different Metal Binding Modes Are Seen In
X- Ray Crystal Structures Of Staphylococcal Nuclease-
Cobalt(Ii)-Nucleotide Complexes
pdb|1STH|A Chain A, Two Distinctly Different Metal Binding Modes Are Seen In
X- Ray Crystal Structures Of Staphylococcal Nuclease-
Cobalt(Ii)-Nucleotide Complexes
pdb|1STN|A Chain A, The Crystal Structure Of Staphylococcal Nuclease Refined
At 1.7 Angstroms Resolution
Length = 149
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0U|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V23iL25II72V
Length = 149
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNGDKV------- 698
T+++MY R + VD HP+ + Y G A + N KV
Sbjct: 22 TIKIMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKVEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 81 DPYVTV-VVPQA---TVARTRVLKNSQEPVWNEH--FNIPLAHPLSNLEIQVKD------ 128
DPYV + ++P T +TR +K + PVWNE FN+ L ++V D
Sbjct: 42 DPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLKPGDVERRLSVEVWDWDRTSR 101
Query: 129 DDVFGAQIIGTAAI 142
+D GA G + +
Sbjct: 102 NDFMGAMSFGVSEL 115
>pdb|1KDC|A Chain A, Stabilization Of A Strained Protein Loop Conformation
Through Protein Engineering
Length = 149
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 27/138 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYNPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSEH 776
+ Q + ++WSE+
Sbjct: 126 RKSEAQAKKEKLNIWSEN 143
>pdb|1EY4|A Chain A, Structure Of S. Nuclease Stabilizing Mutant S59a
Length = 149
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEAAAFTKKMVENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1EY6|A Chain A, Structure Of S. Nuclease Stabilizing Mutant T41i
Length = 149
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVD----AHPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDIPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2SNM|A Chain A, In A Staphylococcal Nuclease Mutant The Side-Chain Of A
Lysine Replacing Valine 66 Is Fully Buried In The
Hydrophobic Core
Length = 149
Score = 30.0 bits (66), Expect = 5.9, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMKENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0O|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V66iI72V
Length = 149
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNGDKV------- 698
T+++MY R + VD HP+ + Y G A + N KV
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMIENAKKVEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0N|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
L25iI72L
Length = 149
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKIMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKLEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0F|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant L25i
Length = 149
Score = 30.0 bits (66), Expect = 6.3, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKIMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0H|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant V66l
Length = 149
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMLENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0G|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant V66i
Length = 149
Score = 29.6 bits (65), Expect = 6.8, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMIENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1JOK|A Chain A, Averaged Structure For Staphylococcal Nuclease-H124l In
Ternary Complex With Ca2+ And
Thymidine-3',5'-Bisphosphate
pdb|1JOO|A Chain A, Averaged Structure For Unligated Staphylococcal Nuclease-
H124l
pdb|1JOQ|A Chain A, Ensemble Structures For Staphylococcal Nuclease-H124l In
Ternary Complex With Ca2+ And
Thymidine-3',5'-Bisphosphate
pdb|1JOR|A Chain A, Ensemble Structures For Unligated Staphylococcal Nuclease-
H124l
pdb|1SNO|A Chain A, Protein Stability In Staphylococcal Nuclease
Length = 149
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQLL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2EYJ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T62v
Length = 149
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFVKKMVENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1EY5|A Chain A, Structure Of S. Nuclease Stabilizing Mutant T33v
pdb|1EZ8|A Chain A, Structure Of S. Nuclease Stabilizing Mutant T33v
Length = 149
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMVFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0W|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V23iL25IV66LI72L
Length = 149
Score = 29.6 bits (65), Expect = 7.7, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TIKIMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMLENAKKLEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1A2T|A Chain A, Staphylococcal Nuclease, B-Mercaptoethanol Disulfide To
V23c Variant
pdb|1A2U|A Chain A, Staphylococcal Nuclease, V23c Variant, Complex With 1-N-
Butane Thiol And 3',5'-Thymidine Diphosphate
pdb|1A3T|A Chain A, Staphylococcal Nuclease, V23c Variant, Complex With 2-
Fluoroethane Thiol And 3',5'-Thymidine Diphosphate
pdb|1A3U|A Chain A, Staphylococcal Nuclease, Cyclohexane Thiol Disulfide To
V23c Variant
pdb|1A3V|A Chain A, Staphylococcal Nuclease, Cyclopentane Thiol Disulfide To
V23c Variant
pdb|1AEX|A Chain A, Staphylococcal Nuclease, Methane Thiol Disulfide To V23c
Variant
pdb|2NUC|A Chain A, Staphlococcal Nuclease, Ethane Thiol Disulfide To V23c
Variant
pdb|3NUC|A Chain A, Staphlococcal Nuclease, 1-N-Propane Thiol Disulfide To
V23c Variant
pdb|5NUC|A Chain A, Staphylococcal Nuclease, 1-N-Pentane Thiol Disulfide To
V23c Variant
Length = 149
Score = 29.6 bits (65), Expect = 7.7, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T ++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TXKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1NUC|A Chain A, Staphylococcal Nuclease, V23c Variant
Length = 149
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T ++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TCKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|4H7B|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
I72vV99L
Length = 149
Score = 29.3 bits (64), Expect = 9.5, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNGDKV------- 698
T+++MY R + VD HP+ + Y G A + N KV
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKVEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G ++++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMLNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0T|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V66lV99I
Length = 149
Score = 29.3 bits (64), Expect = 9.6, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 650 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 698
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMLENAKKIEVEFDKG 79
Query: 699 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 758
+ K R + Y++A G ++++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMINEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 759 KHPHGQIYGYRKSLWSE 775
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,219,179
Number of Sequences: 62578
Number of extensions: 1173378
Number of successful extensions: 2436
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 2431
Number of HSP's gapped (non-prelim): 109
length of query: 862
length of database: 14,973,337
effective HSP length: 107
effective length of query: 755
effective length of database: 8,277,491
effective search space: 6249505705
effective search space used: 6249505705
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)