Query 002960
Match_columns 862
No_of_seqs 502 out of 3697
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 14:14:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002960.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002960hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03008 Phospholipase D delta 100.0 4E-190 9E-195 1625.4 77.8 855 6-862 3-868 (868)
2 PLN02270 phospholipase D alpha 100.0 1E-175 2E-180 1508.7 71.8 788 13-862 4-808 (808)
3 PLN02352 phospholipase D epsil 100.0 3E-167 6E-172 1438.2 68.8 708 80-862 36-758 (758)
4 KOG1329 Phospholipase D1 [Lipi 100.0 3E-149 7E-154 1278.2 57.9 776 6-862 65-853 (887)
5 PLN02866 phospholipase D 100.0 2.4E-97 5E-102 869.8 50.7 544 203-837 321-1056(1068)
6 PRK12452 cardiolipin synthetas 100.0 8.7E-46 1.9E-50 428.3 31.8 336 203-753 131-466 (509)
7 PRK01642 cls cardiolipin synth 100.0 9.2E-45 2E-49 419.5 34.5 333 203-753 107-440 (483)
8 PRK11263 cardiolipin synthase 100.0 2.9E-43 6.3E-48 396.1 32.8 341 207-777 3-343 (411)
9 COG1502 Cls Phosphatidylserine 100.0 3.9E-33 8.5E-38 321.7 31.8 337 209-753 57-395 (438)
10 PHA02820 phospholipase-D-like 100.0 7.1E-33 1.5E-37 313.2 31.3 326 241-750 25-360 (424)
11 PRK09428 pssA phosphatidylseri 100.0 2.1E-31 4.5E-36 302.0 31.3 358 209-751 22-394 (451)
12 PHA03003 palmytilated EEV memb 100.0 2.8E-31 6.1E-36 296.9 30.6 316 241-751 30-347 (369)
13 cd04015 C2_plant_PLD C2 domain 99.9 7.5E-25 1.6E-29 216.4 16.7 157 12-180 2-158 (158)
14 PF12357 PLD_C: Phospholipase 99.9 1.6E-24 3.5E-29 178.2 5.8 73 781-853 2-74 (74)
15 cd04016 C2_Tollip C2 domain pr 99.8 2E-20 4.3E-25 175.8 15.1 118 16-179 1-121 (121)
16 cd04013 C2_SynGAP_like C2 doma 99.8 9.2E-20 2E-24 175.9 16.6 125 15-186 9-145 (146)
17 cd08379 C2D_MCTP_PRT_plant C2 99.8 5.9E-19 1.3E-23 167.0 14.8 114 19-175 2-125 (126)
18 cd04042 C2A_MCTP_PRT C2 domain 99.8 3.5E-18 7.7E-23 161.5 15.9 120 18-181 1-121 (121)
19 cd08682 C2_Rab11-FIP_classI C2 99.8 1.8E-18 4E-23 164.7 13.6 117 19-178 1-126 (126)
20 PRK05443 polyphosphate kinase; 99.8 2.7E-17 5.9E-22 194.7 24.8 273 239-753 345-634 (691)
21 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.2E-17 2.7E-22 157.7 14.4 118 19-179 2-121 (121)
22 cd08400 C2_Ras_p21A1 C2 domain 99.8 2.3E-17 5E-22 157.1 16.1 120 16-181 3-124 (126)
23 TIGR03705 poly_P_kin polyphosp 99.7 7.6E-17 1.6E-21 189.7 23.0 268 240-752 337-624 (672)
24 cd04019 C2C_MCTP_PRT_plant C2 99.7 2.7E-17 5.8E-22 161.0 14.4 121 19-182 2-134 (150)
25 cd04022 C2A_MCTP_PRT_plant C2 99.7 3.8E-17 8.3E-22 155.8 13.3 120 18-181 1-127 (127)
26 cd08681 C2_fungal_Inn1p-like C 99.7 2.9E-17 6.3E-22 154.5 11.8 116 17-179 1-118 (118)
27 cd08678 C2_C21orf25-like C2 do 99.7 1.4E-16 3E-21 151.8 15.1 104 80-183 18-123 (126)
28 cd08378 C2B_MCTP_PRT_plant C2 99.7 8.5E-17 1.8E-21 152.0 12.9 97 80-179 17-119 (121)
29 cd08377 C2C_MCTP_PRT C2 domain 99.7 1.7E-16 3.7E-21 149.3 14.8 117 17-179 1-118 (119)
30 cd04014 C2_PKC_epsilon C2 doma 99.7 3.6E-16 7.8E-21 150.1 15.5 126 15-181 2-130 (132)
31 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 2.9E-16 6.3E-21 148.4 14.2 117 19-178 2-120 (121)
32 cd04044 C2A_Tricalbin-like C2 99.7 2.4E-16 5.2E-21 149.4 13.2 121 17-181 2-124 (124)
33 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 4.5E-16 9.9E-21 149.5 13.3 120 18-180 1-133 (133)
34 cd08376 C2B_MCTP_PRT C2 domain 99.7 1.1E-15 2.5E-20 143.1 15.3 112 19-180 2-115 (116)
35 cd08391 C2A_C2C_Synaptotagmin_ 99.7 7.5E-16 1.6E-20 145.3 13.7 120 17-179 1-121 (121)
36 cd04036 C2_cPLA2 C2 domain pre 99.7 6.8E-16 1.5E-20 145.4 13.3 113 19-179 2-117 (119)
37 cd04024 C2A_Synaptotagmin-like 99.7 8E-16 1.7E-20 146.7 13.9 120 17-179 1-128 (128)
38 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 9.5E-16 2.1E-20 145.3 13.6 118 18-178 1-123 (123)
39 KOG1030 Predicted Ca2+-depende 99.6 4.1E-16 8.8E-21 149.8 9.8 97 14-153 3-100 (168)
40 cd08677 C2A_Synaptotagmin-13 C 99.6 5.4E-16 1.2E-20 143.7 10.3 105 10-159 7-118 (118)
41 cd08373 C2A_Ferlin C2 domain f 99.6 2.4E-15 5.2E-20 143.4 14.9 103 80-185 15-121 (127)
42 cd08685 C2_RGS-like C2 domain 99.6 7.1E-16 1.5E-20 145.1 10.6 105 12-159 7-119 (119)
43 cd08395 C2C_Munc13 C2 domain t 99.6 1.3E-15 2.9E-20 142.9 12.1 99 18-159 1-110 (120)
44 cd08381 C2B_PI3K_class_II C2 d 99.6 9.3E-16 2E-20 145.1 11.0 102 15-159 11-121 (122)
45 cd04046 C2_Calpain C2 domain p 99.6 5.4E-15 1.2E-19 140.8 16.3 122 16-182 2-124 (126)
46 cd08375 C2_Intersectin C2 doma 99.6 4.4E-15 9.5E-20 143.1 14.7 114 17-179 15-135 (136)
47 cd08688 C2_KIAA0528-like C2 do 99.6 1.2E-15 2.5E-20 141.8 10.4 100 19-161 1-109 (110)
48 KOG3603 Predicted phospholipas 99.6 1.4E-13 3E-18 149.0 26.4 338 242-750 72-418 (456)
49 cd04028 C2B_RIM1alpha C2 domai 99.6 4.2E-15 9.1E-20 144.1 13.1 107 14-162 26-139 (146)
50 cd08385 C2A_Synaptotagmin-1-5- 99.6 3.6E-15 7.7E-20 141.6 12.3 103 15-159 14-122 (124)
51 cd08387 C2A_Synaptotagmin-8 C2 99.6 3E-15 6.5E-20 142.1 11.4 104 15-160 14-123 (124)
52 cd04050 C2B_Synaptotagmin-like 99.6 4.5E-15 9.8E-20 136.6 12.2 97 19-160 2-101 (105)
53 cd08393 C2A_SLP-1_2 C2 domain 99.6 4E-15 8.6E-20 141.5 10.8 103 15-159 13-124 (125)
54 cd04043 C2_Munc13_fungal C2 do 99.6 1.6E-14 3.4E-19 137.5 14.8 114 18-181 2-122 (126)
55 cd08394 C2A_Munc13 C2 domain f 99.6 8.3E-15 1.8E-19 137.2 12.5 97 17-160 2-100 (127)
56 cd04045 C2C_Tricalbin-like C2 99.6 7E-15 1.5E-19 138.7 12.1 104 17-163 1-105 (120)
57 cd04017 C2D_Ferlin C2 domain f 99.6 1.6E-14 3.6E-19 139.2 14.8 118 18-182 2-134 (135)
58 cd08382 C2_Smurf-like C2 domai 99.6 1E-14 2.3E-19 138.2 13.1 116 19-177 2-122 (123)
59 cd04051 C2_SRC2_like C2 domain 99.6 4.9E-15 1.1E-19 140.8 10.8 113 18-175 1-125 (125)
60 cd04029 C2A_SLP-4_5 C2 domain 99.6 7.7E-15 1.7E-19 139.4 11.1 104 14-159 12-124 (125)
61 cd04018 C2C_Ferlin C2 domain t 99.6 5.8E-15 1.2E-19 144.1 10.4 113 18-160 1-116 (151)
62 cd08392 C2A_SLP-3 C2 domain fi 99.6 7.2E-15 1.6E-19 140.1 10.6 109 9-159 7-127 (128)
63 cd08690 C2_Freud-1 C2 domain f 99.6 2.7E-14 5.8E-19 139.5 14.6 98 80-180 25-137 (155)
64 cd04027 C2B_Munc13 C2 domain s 99.6 2E-14 4.3E-19 137.1 13.4 114 18-177 2-127 (127)
65 cd04041 C2A_fungal C2 domain f 99.6 7.5E-15 1.6E-19 136.6 10.3 98 17-159 1-106 (111)
66 cd08383 C2A_RasGAP C2 domain ( 99.6 3.4E-14 7.4E-19 133.2 14.4 96 80-179 18-117 (117)
67 cd04010 C2B_RasA3 C2 domain se 99.6 2E-14 4.3E-19 140.1 12.2 83 80-162 19-123 (148)
68 cd08680 C2_Kibra C2 domain fou 99.6 1.3E-14 2.9E-19 137.2 10.5 104 14-159 11-124 (124)
69 cd04030 C2C_KIAA1228 C2 domain 99.6 1.8E-14 4E-19 137.2 11.5 102 16-159 15-126 (127)
70 cd04031 C2A_RIM1alpha C2 domai 99.6 2.5E-14 5.5E-19 135.8 11.7 101 16-159 15-124 (125)
71 cd04040 C2D_Tricalbin-like C2 99.6 4.2E-14 9.2E-19 132.2 12.8 111 19-174 1-113 (115)
72 cd04039 C2_PSD C2 domain prese 99.5 2.6E-14 5.6E-19 132.1 10.7 97 17-152 1-100 (108)
73 cd08386 C2A_Synaptotagmin-7 C2 99.5 4E-14 8.7E-19 134.5 12.3 103 16-160 15-124 (125)
74 cd04052 C2B_Tricalbin-like C2 99.5 4.2E-14 9.1E-19 131.5 11.7 97 80-182 13-111 (111)
75 cd08388 C2A_Synaptotagmin-4-11 99.5 5.7E-14 1.2E-18 134.1 12.8 103 15-159 14-126 (128)
76 cd04049 C2_putative_Elicitor-r 99.5 4.8E-14 1E-18 133.8 11.8 101 17-160 1-107 (124)
77 cd08521 C2A_SLP C2 domain firs 99.5 3.4E-14 7.3E-19 134.5 10.2 103 15-159 12-123 (123)
78 cd08407 C2B_Synaptotagmin-13 C 99.5 8.8E-15 1.9E-19 140.8 6.2 117 8-166 6-130 (138)
79 cd00138 PLDc Phospholipase D. 99.5 1.8E-13 3.8E-18 137.9 14.7 145 241-459 20-169 (176)
80 cd08384 C2B_Rabphilin_Doc2 C2 99.5 2.2E-14 4.7E-19 137.9 7.7 108 15-166 11-126 (133)
81 cd04011 C2B_Ferlin C2 domain s 99.5 1.1E-13 2.3E-18 128.8 12.0 82 80-162 21-111 (111)
82 cd08676 C2A_Munc13-like C2 dom 99.5 6.9E-14 1.5E-18 136.8 10.7 98 16-159 27-153 (153)
83 cd08406 C2B_Synaptotagmin-12 C 99.5 1.7E-14 3.6E-19 138.8 6.1 113 10-166 8-128 (136)
84 cd08390 C2A_Synaptotagmin-15-1 99.5 1.2E-13 2.6E-18 130.8 11.9 103 15-159 12-121 (123)
85 cd08402 C2B_Synaptotagmin-1 C2 99.5 2E-14 4.3E-19 138.8 5.9 116 7-166 5-128 (136)
86 cd04038 C2_ArfGAP C2 domain pr 99.5 2.1E-13 4.5E-18 132.6 13.0 91 17-151 2-93 (145)
87 cd08692 C2B_Tac2-N C2 domain s 99.5 4.4E-14 9.6E-19 134.2 8.1 115 9-166 6-128 (135)
88 cd08675 C2B_RasGAP C2 domain s 99.5 1.3E-13 2.7E-18 133.2 11.2 100 19-161 1-120 (137)
89 cd08404 C2B_Synaptotagmin-4 C2 99.5 3.7E-14 8.1E-19 136.9 7.4 108 15-166 13-128 (136)
90 cd08389 C2A_Synaptotagmin-14_1 99.5 1.4E-13 3E-18 130.6 11.1 102 15-159 14-122 (124)
91 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 1.1E-13 2.3E-18 137.5 10.7 103 15-159 25-136 (162)
92 cd00275 C2_PLC_like C2 domain 99.5 4.6E-13 9.9E-18 127.6 14.0 116 18-179 3-127 (128)
93 cd08403 C2B_Synaptotagmin-3-5- 99.5 3.7E-14 8E-19 136.5 6.0 112 11-166 8-127 (134)
94 cd08405 C2B_Synaptotagmin-7 C2 99.5 5.1E-14 1.1E-18 135.9 6.4 108 15-166 13-128 (136)
95 cd04026 C2_PKC_alpha_gamma C2 99.5 2.9E-13 6.2E-18 129.8 11.5 107 13-162 9-122 (131)
96 cd04021 C2_E3_ubiquitin_ligase 99.5 6.5E-13 1.4E-17 126.3 13.7 97 80-177 22-124 (125)
97 cd04032 C2_Perforin C2 domain 99.5 2.7E-13 5.9E-18 128.6 10.6 88 17-148 28-118 (127)
98 KOG1028 Ca2+-dependent phospho 99.5 3.3E-13 7.1E-18 153.2 12.5 129 14-184 164-298 (421)
99 cd00276 C2B_Synaptotagmin C2 d 99.4 1E-13 2.2E-18 133.2 6.9 107 16-166 13-127 (134)
100 cd08409 C2B_Synaptotagmin-15 C 99.4 1.3E-13 2.8E-18 133.2 6.4 109 15-166 13-129 (137)
101 cd08686 C2_ABR C2 domain in th 99.4 1.7E-12 3.7E-17 120.1 13.5 65 80-145 15-91 (118)
102 KOG0696 Serine/threonine prote 99.4 6.2E-14 1.3E-18 150.1 4.0 105 15-162 178-289 (683)
103 PHA02820 phospholipase-D-like 99.4 1.9E-12 4.1E-17 147.3 16.2 147 520-749 4-150 (424)
104 cd04009 C2B_Munc13-like C2 dom 99.4 6.2E-13 1.3E-17 127.9 10.3 91 17-149 16-118 (133)
105 cd08410 C2B_Synaptotagmin-17 C 99.4 1.9E-13 4.1E-18 131.8 6.0 110 14-166 11-128 (135)
106 cd08691 C2_NEDL1-like C2 domai 99.4 3.2E-12 6.9E-17 123.0 14.1 115 18-177 2-136 (137)
107 cd08408 C2B_Synaptotagmin-14_1 99.4 1.6E-12 3.4E-17 125.7 12.0 110 14-166 12-130 (138)
108 PRK13912 nuclease NucT; Provis 99.4 7.4E-12 1.6E-16 126.3 16.2 141 241-459 32-174 (177)
109 cd04037 C2E_Ferlin C2 domain f 99.4 2.1E-12 4.5E-17 122.6 11.3 116 19-181 2-120 (124)
110 cd04048 C2A_Copine C2 domain f 99.4 1.6E-12 3.5E-17 122.6 10.5 80 80-159 21-112 (120)
111 cd04035 C2A_Rabphilin_Doc2 C2 99.4 4E-12 8.7E-17 120.4 11.3 102 15-158 13-122 (123)
112 PLN03200 cellulose synthase-in 99.3 2.1E-12 4.6E-17 165.0 11.2 120 14-181 1977-2101(2102)
113 KOG2059 Ras GTPase-activating 99.3 1.7E-12 3.7E-17 146.9 8.9 130 17-190 5-135 (800)
114 cd00138 PLDc Phospholipase D. 99.3 1.9E-11 4.1E-16 123.1 13.7 131 559-751 19-152 (176)
115 PHA03003 palmytilated EEV memb 99.3 1E-11 2.2E-16 139.5 12.8 142 243-459 217-363 (369)
116 PRK13912 nuclease NucT; Provis 99.3 2.4E-11 5.2E-16 122.6 14.2 127 560-753 32-160 (177)
117 PRK12452 cardiolipin synthetas 99.3 1.1E-11 2.3E-16 144.6 11.1 139 241-460 343-481 (509)
118 PF13091 PLDc_2: PLD-like doma 99.2 4.3E-11 9.4E-16 113.5 10.0 113 566-751 1-113 (126)
119 cd04047 C2B_Copine C2 domain s 99.2 6.5E-11 1.4E-15 109.8 10.4 70 80-150 21-101 (110)
120 PF00168 C2: C2 domain; Inter 99.1 1.1E-10 2.5E-15 101.9 7.9 81 19-141 1-85 (85)
121 KOG1011 Neurotransmitter relea 99.1 6.9E-11 1.5E-15 131.5 7.6 118 15-178 293-422 (1283)
122 PF13091 PLDc_2: PLD-like doma 99.1 7.2E-10 1.6E-14 105.1 12.1 124 247-456 1-126 (126)
123 PLN02223 phosphoinositide phos 99.1 9.3E-10 2E-14 125.3 14.3 96 80-179 435-536 (537)
124 cd00030 C2 C2 domain. The C2 d 99.1 7.1E-10 1.5E-14 98.9 10.2 80 80-159 20-102 (102)
125 COG5038 Ca2+-dependent lipid-b 99.0 6.7E-10 1.5E-14 132.8 11.4 127 17-187 436-564 (1227)
126 smart00239 C2 Protein kinase C 99.0 1.1E-09 2.4E-14 98.1 10.2 73 80-152 21-97 (101)
127 PLN02952 phosphoinositide phos 99.0 2.9E-09 6.2E-14 123.9 13.9 96 80-179 497-598 (599)
128 PRK01642 cls cardiolipin synth 99.0 2.4E-09 5.3E-14 124.7 12.0 138 241-460 317-455 (483)
129 KOG1028 Ca2+-dependent phospho 99.0 4.9E-10 1.1E-14 127.4 6.0 116 7-166 288-411 (421)
130 PLN02230 phosphoinositide phos 98.9 5.8E-09 1.3E-13 121.2 13.1 96 80-179 496-597 (598)
131 PLN02222 phosphoinositide phos 98.9 1.4E-08 2.9E-13 118.0 14.1 96 80-179 479-580 (581)
132 KOG1031 Predicted Ca2+-depende 98.9 5.3E-09 1.1E-13 115.5 9.7 132 15-191 1-150 (1169)
133 PF00614 PLDc: Phospholipase D 98.9 6.5E-10 1.4E-14 75.4 1.4 27 363-397 2-28 (28)
134 PRK11263 cardiolipin synthase 98.9 1.1E-08 2.5E-13 116.1 11.9 135 241-457 205-340 (411)
135 KOG0169 Phosphoinositide-speci 98.9 9.4E-09 2E-13 119.2 11.1 98 80-181 641-745 (746)
136 PLN02228 Phosphoinositide phos 98.8 2.2E-08 4.9E-13 115.9 13.8 99 80-182 458-563 (567)
137 COG5038 Ca2+-dependent lipid-b 98.8 1E-08 2.2E-13 123.0 9.2 122 16-181 1039-1162(1227)
138 cd08689 C2_fungal_Pkc1p C2 dom 98.8 1.6E-08 3.5E-13 90.6 8.0 66 80-149 23-88 (109)
139 cd08374 C2F_Ferlin C2 domain s 98.8 3.5E-08 7.6E-13 94.0 9.9 72 80-151 25-125 (133)
140 PRK05443 polyphosphate kinase; 98.7 7E-08 1.5E-12 115.3 11.6 119 564-753 351-481 (691)
141 KOG3603 Predicted phospholipas 98.6 5.4E-07 1.2E-11 98.5 15.4 159 520-750 48-207 (456)
142 KOG1264 Phospholipase C [Lipid 98.6 1.9E-07 4.1E-12 107.3 10.8 102 80-185 1085-1194(1267)
143 PRK09428 pssA phosphatidylseri 98.6 3.6E-07 7.8E-12 104.8 13.3 137 560-751 34-178 (451)
144 smart00155 PLDc Phospholipase 98.6 3.5E-08 7.6E-13 67.7 2.9 26 709-734 3-28 (28)
145 KOG1328 Synaptic vesicle prote 98.3 1.2E-07 2.6E-12 107.9 0.9 149 19-185 116-306 (1103)
146 KOG1328 Synaptic vesicle prote 98.3 2.2E-07 4.7E-12 105.8 1.4 93 14-148 944-1048(1103)
147 PF00614 PLDc: Phospholipase D 98.3 3E-07 6.6E-12 62.5 1.5 26 709-734 3-28 (28)
148 COG1502 Cls Phosphatidylserine 98.2 5.8E-06 1.3E-10 95.7 10.8 135 245-459 273-409 (438)
149 cd08683 C2_C2cd3 C2 domain fou 98.0 1.3E-05 2.9E-10 74.2 6.2 82 78-159 31-143 (143)
150 PF07894 DUF1669: Protein of u 97.7 0.00029 6.3E-09 74.9 12.4 189 176-456 90-278 (284)
151 KOG2059 Ras GTPase-activating 97.6 8.8E-05 1.9E-09 85.5 6.7 105 80-184 151-280 (800)
152 PF13918 PLDc_3: PLD-like doma 97.6 0.00051 1.1E-08 68.2 11.2 60 561-634 82-147 (177)
153 TIGR03705 poly_P_kin polyphosp 97.6 0.00039 8.5E-09 83.2 12.5 119 564-753 342-472 (672)
154 KOG0905 Phosphoinositide 3-kin 97.6 4.9E-05 1.1E-09 91.3 4.4 105 13-159 1520-1633(1639)
155 smart00155 PLDc Phospholipase 97.4 0.00011 2.3E-09 50.4 2.6 24 364-395 3-26 (28)
156 KOG3964 Phosphatidylglycerolph 97.4 0.023 5E-07 62.2 20.6 130 239-398 36-170 (469)
157 KOG1326 Membrane-associated pr 97.3 0.00032 6.9E-09 83.8 5.6 87 18-146 614-703 (1105)
158 PF13918 PLDc_3: PLD-like doma 97.2 0.0015 3.2E-08 65.0 9.1 69 227-305 71-140 (177)
159 KOG1013 Synaptic vesicle prote 97.2 0.00027 6E-09 75.2 4.0 100 16-159 232-339 (362)
160 KOG3837 Uncharacterized conser 97.1 0.00035 7.5E-09 76.1 4.0 98 80-180 388-503 (523)
161 KOG1011 Neurotransmitter relea 97.1 0.0013 2.9E-08 74.7 8.0 80 80-159 1145-1235(1283)
162 PLN02866 phospholipase D 97.1 0.002 4.4E-08 78.9 10.0 62 560-628 343-404 (1068)
163 PF13090 PP_kinase_C: Polyphos 96.9 0.14 3E-06 56.1 21.0 138 241-454 17-160 (352)
164 KOG2060 Rab3 effector RIM1 and 96.8 0.0011 2.3E-08 71.9 4.3 86 80-165 291-383 (405)
165 KOG1013 Synaptic vesicle prote 96.8 0.0003 6.4E-09 74.9 -0.2 127 17-185 93-234 (362)
166 KOG1326 Membrane-associated pr 96.8 0.00038 8.1E-09 83.2 0.5 132 80-218 227-369 (1105)
167 PLN02964 phosphatidylserine de 96.4 0.0043 9.3E-08 73.8 6.3 85 80-164 68-156 (644)
168 KOG1327 Copine [Signal transdu 96.4 0.0033 7.2E-08 72.0 4.9 124 80-207 157-295 (529)
169 KOG1265 Phospholipase C [Lipid 96.1 0.019 4.1E-07 68.2 9.1 101 14-166 700-810 (1189)
170 PF07894 DUF1669: Protein of u 96.1 0.048 1E-06 58.3 11.1 130 560-747 133-262 (284)
171 COG0855 Ppk Polyphosphate kina 96.0 0.97 2.1E-05 53.1 21.7 101 238-376 348-448 (696)
172 PF11495 Regulator_TrmB: Archa 95.9 0.029 6.3E-07 59.3 8.8 50 241-307 9-58 (233)
173 PF10358 NT-C2: N-terminal C2 95.8 0.19 4E-06 48.7 13.5 104 80-187 24-142 (143)
174 cd08684 C2A_Tac2-N C2 domain f 95.8 0.0079 1.7E-07 52.2 3.0 76 82-159 23-103 (103)
175 COG3886 Predicted HKD family n 94.9 0.35 7.6E-06 48.4 11.6 140 241-457 38-178 (198)
176 KOG1329 Phospholipase D1 [Lipi 94.7 0.12 2.5E-06 62.6 9.1 27 365-399 701-727 (887)
177 cd08398 C2_PI3K_class_I_alpha 94.3 1.1 2.3E-05 44.4 13.6 66 80-146 26-105 (158)
178 PF12416 DUF3668: Cep120 prote 94.0 0.8 1.7E-05 50.9 13.3 104 80-184 18-136 (340)
179 PLN02352 phospholipase D epsil 93.7 0.085 1.8E-06 63.7 5.5 65 241-305 452-519 (758)
180 PLN03008 Phospholipase D delta 92.2 0.15 3.2E-06 62.0 4.6 26 365-398 716-741 (868)
181 KOG1452 Predicted Rho GTPase-a 91.9 0.36 7.8E-06 51.4 6.4 128 6-181 40-168 (442)
182 cd08693 C2_PI3K_class_I_beta_d 91.7 1 2.3E-05 45.2 9.4 67 80-146 27-119 (173)
183 PF13090 PP_kinase_C: Polyphos 90.6 0.72 1.6E-05 50.7 7.4 94 606-753 51-151 (352)
184 cd08397 C2_PI3K_class_III C2 d 90.6 0.9 1.9E-05 45.0 7.6 68 80-147 30-107 (159)
185 PF15627 CEP76-C2: CEP76 C2 do 90.5 2.2 4.8E-05 41.9 10.0 103 80-183 34-153 (156)
186 cd08687 C2_PKN-like C2 domain 89.5 2.1 4.6E-05 37.8 8.0 84 80-179 9-92 (98)
187 PLN02270 phospholipase D alpha 89.0 1.4 2.9E-05 53.9 8.7 64 560-627 208-271 (808)
188 PF15625 CC2D2AN-C2: CC2D2A N- 89.0 1.6 3.5E-05 43.6 8.1 68 80-147 37-106 (168)
189 cd08380 C2_PI3K_like C2 domain 88.9 2.3 4.9E-05 41.9 9.0 68 80-147 28-107 (156)
190 cd04012 C2A_PI3K_class_II C2 d 88.1 3.9 8.5E-05 41.0 10.2 67 80-146 29-118 (171)
191 PF09565 RE_NgoFVII: NgoFVII r 87.1 5.3 0.00011 43.6 11.1 41 708-750 78-123 (296)
192 PF00792 PI3K_C2: Phosphoinosi 84.4 4.6 0.0001 39.0 8.3 67 81-147 3-85 (142)
193 COG0855 Ppk Polyphosphate kina 83.7 2.2 4.8E-05 50.3 6.5 93 606-753 385-485 (696)
194 PF14429 DOCK-C2: C2 domain in 80.8 6 0.00013 40.1 7.9 55 92-146 59-120 (184)
195 PF11618 DUF3250: Protein of u 80.0 13 0.00029 34.2 9.0 93 83-179 2-104 (107)
196 KOG0694 Serine/threonine prote 77.9 1.4 3.1E-05 52.2 2.4 96 80-184 28-125 (694)
197 cd08399 C2_PI3K_class_I_gamma 76.4 21 0.00045 36.1 10.0 49 81-129 31-87 (178)
198 smart00142 PI3K_C2 Phosphoinos 75.3 18 0.00038 32.8 8.4 50 80-129 32-90 (100)
199 cd08695 C2_Dock-B C2 domains f 75.0 6.5 0.00014 40.0 6.0 52 93-144 54-111 (189)
200 KOG4269 Rac GTPase-activating 74.3 2.5 5.4E-05 51.2 3.2 119 14-187 756-889 (1112)
201 COG3886 Predicted HKD family n 72.3 34 0.00074 34.6 10.0 52 560-629 38-89 (198)
202 cd08694 C2_Dock-A C2 domains f 70.9 9.9 0.00021 38.8 6.1 54 92-145 53-114 (196)
203 KOG1327 Copine [Signal transdu 70.8 5.4 0.00012 46.5 4.8 85 91-178 40-130 (529)
204 PF06087 Tyr-DNA_phospho: Tyro 65.1 4.5 9.7E-05 47.1 2.7 41 706-747 344-401 (443)
205 KOG3964 Phosphatidylglycerolph 63.2 9.4 0.0002 42.6 4.5 54 561-630 39-92 (469)
206 cd08696 C2_Dock-C C2 domains f 60.5 30 0.00066 34.9 7.3 39 92-130 54-95 (179)
207 cd05137 RasGAP_CLA2_BUD2 CLA2/ 60.2 10 0.00022 43.3 4.4 48 136-185 1-49 (395)
208 cd08679 C2_DOCK180_related C2 60.1 23 0.0005 35.7 6.5 52 95-146 55-115 (178)
209 PF11495 Regulator_TrmB: Archa 58.9 29 0.00063 36.5 7.3 51 559-629 8-58 (233)
210 PF06219 DUF1005: Protein of u 54.6 1E+02 0.0022 35.0 10.6 106 80-189 36-173 (460)
211 cd08697 C2_Dock-D C2 domains f 53.4 53 0.0011 33.4 7.7 39 92-130 56-97 (185)
212 PTZ00447 apical membrane antig 46.7 1.2E+02 0.0027 33.4 9.4 93 80-177 74-170 (508)
213 COG2044 Predicted peroxiredoxi 42.3 88 0.0019 29.4 6.6 63 240-304 16-81 (120)
214 PF07162 B9-C2: Ciliary basal 39.3 3.2E+02 0.007 27.1 10.9 65 93-158 40-117 (168)
215 KOG3543 Ca2+-dependent activat 35.7 2.1E+02 0.0045 34.0 9.6 93 82-179 362-458 (1218)
216 PF06087 Tyr-DNA_phospho: Tyro 26.8 42 0.00091 39.1 2.4 36 709-747 100-139 (443)
217 PF13289 SIR2_2: SIR2-like dom 24.6 2.3E+02 0.005 26.6 6.8 64 243-341 75-142 (143)
218 COG1378 Predicted transcriptio 23.7 1.2E+02 0.0025 32.5 4.9 50 241-307 119-168 (247)
No 1
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=4.1e-190 Score=1625.40 Aligned_cols=855 Identities=73% Similarity=1.231 Sum_probs=779.4
Q ss_pred CCCCceeEeeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEE
Q 002960 6 DSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVT 85 (862)
Q Consensus 6 ~~~~~~~~~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~ 85 (862)
+..+.++++|||+|+|+|++|++||+||++++.+++|+..+..|.+...+.......++....++.+.+.+..++||||+
T Consensus 3 ~~~~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~ 82 (868)
T PLN03008 3 EKVSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVT 82 (868)
T ss_pred cccccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEE
Confidence 56688999999999999999999999999999899998866655544332222223333333345556677788999999
Q ss_pred EEECCeEEEeeeeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCCCeeeEEEEEeceeeccCceeEEEEEccCCCCC
Q 002960 86 VVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (862)
Q Consensus 86 v~l~~~~~~rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~ 165 (862)
|.+++++++||+|++++.||+|||+|+|+|+++...|+|+|||+|.+++++||++.||++++..|+.++.|++|++..++
T Consensus 83 I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~k 162 (868)
T PLN03008 83 VVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGK 162 (868)
T ss_pred EEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCC
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEeeeecCCCCCccccCCCCCCCCCCccccccccccCCceeEeeeccccCCCCCceecCCCCCCCcchHHH
Q 002960 166 PPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWE 245 (862)
Q Consensus 166 ~~~~~g~l~l~l~~~~~~~~~~~~~gi~~g~~~~gvp~s~~p~~~gn~v~l~~d~~~~~~~~p~~~l~~g~~y~~~~~f~ 245 (862)
+++++++|+|+|+|+|+..++.|.+||++++++.|||.+|||++.||+|+||||||++|||+|.|.|+||+.|+|.+||+
T Consensus 163 p~k~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwe 242 (868)
T PLN03008 163 PPKAETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWE 242 (868)
T ss_pred CCCCCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHH
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCcccccccccCCcccC
Q 002960 246 DICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMAT 325 (862)
Q Consensus 246 ~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~~~~~~~~~ 325 (862)
+|++||++||++|||++||++++++|+|++.. +.+++.+|++||++||+|||+|+|||||+.+|+..+++++.|+|.|
T Consensus 243 di~~AI~~Ak~~IyI~gWsl~~ei~L~R~~~~--~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~t 320 (868)
T PLN03008 243 DICYAISEAHHMIYIVGWSIFHKIKLVRETKV--PRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGT 320 (868)
T ss_pred HHHHHHHhhhheEEEeceeecceeEEecCCCC--CCCCCccHHHHHHHHHHCCCEEEEEEeccccccccccccccccccc
Confidence 99999999999999999999999999999863 2223589999999999999999999999999987788899999999
Q ss_pred CcHHHHhhhcCCCceEEecCCCCCCcccccccc-----------ccccccccccceEEeccCCCCCCcceEEEEcccccc
Q 002960 326 HDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQ-----------IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLC 394 (862)
Q Consensus 326 ~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~-----------~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~ 394 (862)
|+++++++|+|++|.|.++|++++.+.+++++. ..+++|+||||+||||+++++++|+.+|||||+|||
T Consensus 321 hdeet~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc 400 (868)
T PLN03008 321 HDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLC 400 (868)
T ss_pred ccHHHHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceecc
Confidence 999999999999999999999988888888773 456889999999999998788889999999999999
Q ss_pred CcccCCCCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEeCHHHHHHHHHHHHHHHhhccchhhhhhcccccc
Q 002960 395 DGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSH 474 (862)
Q Consensus 395 ~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~ 474 (862)
+|||||+.|++++++++.|++||+||++.++.+.|++||||+|++|+||+|++|.++|.+||+++++.+++..+.++...
T Consensus 401 ~gRwDT~~H~l~~~l~t~~~~D~~np~~~~~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~ 480 (868)
T PLN03008 401 DGRYDTPEHRILHDLDTVFKDDFHNPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTH 480 (868)
T ss_pred CCccCCcCCCccccccccccccccCccccCCCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCccccccccccccc
Confidence 99999999999999999999999999988888899999999999999999999999999999999987544445566667
Q ss_pred CccchhhhccccccccCccccccCCCCcccCCCCcccccccCCCCCCeeeEEEeeccCCCCCCCCCCchhhhcccccccc
Q 002960 475 WRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAK 554 (862)
Q Consensus 475 ~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~ 554 (862)
|.++.|+++.++++++.|+....+......+.+.+.++....+++++|.+|+|||++.|++++||+.++++..++|+|+|
T Consensus 481 ~~~d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk 560 (868)
T PLN03008 481 WQDDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAK 560 (868)
T ss_pred cccchhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhcccccc
Confidence 88999999999999887754322222212222222222222367789999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCC
Q 002960 555 DVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGD 634 (862)
Q Consensus 555 ~~~~e~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Peg~ 634 (862)
+..+|+||++||+++|++||||||||||||++++++|+.+.+.++.|+|+++|+++|+++++++++|+|+||+|+||||+
T Consensus 561 ~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~peG~ 640 (868)
T PLN03008 561 RLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGD 640 (868)
T ss_pred ccchhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEeeCCCcCCCCcccccCCCCcccccccccceeeEEEeE
Q 002960 635 PKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAK 714 (862)
Q Consensus 635 ~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~iyvHSK 714 (862)
+.++++|+||+||++||+++|.+|.++|++.|.+.+|.+||+||||||+|...+..++.+++.+..+|++++++||||||
T Consensus 641 ~~sg~vq~Il~wq~~TM~~~~~~I~~~L~~~~~d~~p~dyl~fy~L~~~e~~~~~~~~~~~~~~~~a~~~rr~~IYvHsK 720 (868)
T PLN03008 641 PKSGPVQEILYWQSQTMQMMYDVIAKELKAVQSDAHPLDYLNFYCLGKREQLPDDMPATNGSVVSDSYNFQRFMIYVHAK 720 (868)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccCEEEEecccccccccCCCCCCCCchhhhhhhccceeEEEeee
Confidence 99999999999999999999999999999988767899999999999999875444555677777889999999999999
Q ss_pred EEEEeeeEEEecCcCccccccCCCCCcceEEEeeCCccccccccCCCCchHHHHHHHHHHHhcCCCcccccCCCchHHHH
Q 002960 715 GMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQIYGYRKSLWSEHLGMLDNCFEEPESLDCIR 794 (862)
Q Consensus 715 lmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~~~~~~~~~~~~~~~lR~~Lw~eHlG~~~~~~~~p~~~~~~~ 794 (862)
+|||||++++|||||||+|||.++||+|+++.+++|.++|+++.+.++|+|++||++||+||||+.++.|.+|+|++|++
T Consensus 721 ~~ivDd~~~~iGSaN~n~RS~~~~Rd~E~~~~~~~~~~~~~~~~~~~rg~I~g~R~sLwaEHLG~~~~~~~~p~s~ecv~ 800 (868)
T PLN03008 721 GMIVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQPNHTWAHKGRHPRGQVYGYRMSLWAEHLGKTGDEFVEPSDLECLK 800 (868)
T ss_pred EEEECCCEEEEeccccCHhhccCCCCceEeEEeccccccccccCcchhhHHHHHHHHHHHHHhCCCHHHccCCCCHHHHH
Confidence 99999999999999999999999999999999999999987667788999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhcccccCCCccceeeCCcccCCCCCccCCCCCCCCCCCCCceecccCCCCCCCCCC
Q 002960 795 KVNQIAGENWGRFTAMEFTPLQGHLLRYPLQVDADGTVSPLPGYEQFPDAGGKIIGVHSMSLPDMLTT 862 (862)
Q Consensus 795 ~~~~~a~~n~~~~~~~~~~~~~g~L~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (862)
++|++|++||++|+++++..|+|||+.||+.|+.+|++++|||+++||||+|+|||+++.+||++|||
T Consensus 801 ~vn~~a~~~w~~y~~~~~~~~~ghl~~yp~~v~~~g~v~~l~g~~~fpd~~~~v~g~~~~~lp~~ltt 868 (868)
T PLN03008 801 KVNTISEENWKRFIDPKFSELQGHLIKYPLQVDVDGKVSPLPDYETFPDVGGKIIGAHSMALPDTLTT 868 (868)
T ss_pred HHHHHHHHHHHHhhccccccCCcccccCceEecCCCcEeeCCCCCcCCCCCCceeccccccCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997
No 2
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=1.1e-175 Score=1508.69 Aligned_cols=788 Identities=49% Similarity=0.864 Sum_probs=712.3
Q ss_pred EeeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeE
Q 002960 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT 92 (862)
Q Consensus 13 ~~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~ 92 (862)
+||||+|+|+|++|++|++++. +..+++++..+... + +. ...++||||+|.+++++
T Consensus 4 ~llhg~l~~~i~ea~~l~~~~~-~~~~~~~~~~~~~~---~-------------------~~-~~~~~~~y~tv~~~~a~ 59 (808)
T PLN02270 4 ILLHGTLHATIYEVDKLHSGGG-PGFLGKLVANVEET---V-------------------GV-GKGESQLYATIDLEKAR 59 (808)
T ss_pred eeeecceEEEEEEcccCCCcch-hhHHHHHHhccchh---c-------------------cC-CCCCCCceEEEEeCCcE
Confidence 4899999999999999998655 44455544432210 0 00 01248999999999999
Q ss_pred EEeeeeccC-CCCCceeeEEEEeecCCCceEEEEEEecCCCCCeeeEEEEEeceeeccCceeEEEEEccCCCCCCCCCCc
Q 002960 93 VARTRVLKN-SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGA 171 (862)
Q Consensus 93 ~~rT~vi~~-t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g 171 (862)
++||+|+.| ..||+|+|+|+++|+|..++|+|+|||.|.+++++||+++||+++|.+|+.+++||+|++.+|+|++++.
T Consensus 60 v~rtr~~~~~~~~p~w~e~f~i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~ 139 (808)
T PLN02270 60 VGRTRKIENEPKNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGS 139 (808)
T ss_pred EEEEeecCCCCCCCccccceEEeeccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCC
Confidence 999999999 4699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeeecCCCCCccccCCCCCCCCCCccccccccccCCceeEeeeccccCCCCCceecCCCCCCCcchHHHHHHHHH
Q 002960 172 SIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAI 251 (862)
Q Consensus 172 ~l~l~l~~~~~~~~~~~~~gi~~g~~~~gvp~s~~p~~~gn~v~l~~d~~~~~~~~p~~~l~~g~~y~~~~~f~~l~~aI 251 (862)
+|+|+++|+|+..++.|.+|+++ ++|.|||.+|||++.||+|+||||||++++|+|.|+|.||+.|+|..||+++++||
T Consensus 140 ~~~~~~~f~~~~~~~~~~~gv~~-~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~AI 218 (808)
T PLN02270 140 KIHVKLQYFEVTKDRNWGRGIRS-AKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAI 218 (808)
T ss_pred EEEEEEEEEEcccCcchhcccCC-cCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHHH
Confidence 99999999999999999999976 89999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCcccccccccCCcccCCcHHHH
Q 002960 252 SEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETK 331 (862)
Q Consensus 252 ~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~ 331 (862)
.+||++|||+||+|+++++|+|++.++.+. ++.+|+++|++||++||+|+||+||+.++.. .++..|+|.||+++++
T Consensus 219 ~~Ar~~IyI~GW~~d~~i~LvRd~~~p~~~-~~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~--~~k~~g~m~thd~~t~ 295 (808)
T PLN02270 219 TNAKHLIYITGWSVYTEISLVRDSRRPKPG-GDVTIGELLKKKASEGVRVLLLVWDDRTSVD--LLKKDGLMATHDEETE 295 (808)
T ss_pred HhhhcEEEEEEeecCCCceEecCCCCCCCC-CcchHHHHHHHHhcCCCEEEEEEEcCcccch--hhccccccccCHHHHH
Confidence 999999999999999999999987655554 3679999999999999999999999987654 2566899999999999
Q ss_pred hhhcCCCceEEecCCCCCCccccccccccccccccccceEEeccCCCC---CCcceEEEEccccccCcccCCCCcccccC
Q 002960 332 KFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASG---NNRKITAFIGGIDLCDGRYDTPEHRLFRD 408 (862)
Q Consensus 332 ~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~---~~~~~vafvGG~dl~~~R~Dt~~H~l~~~ 408 (862)
++|++++|+|++++++|+.+.+++++...++.++||||+||||+++++ ++|+++|||||+|||+|||||++|++|++
T Consensus 296 ~~f~~~~V~~~L~~r~P~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~~ 375 (808)
T PLN02270 296 NFFRGTDVHCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFRT 375 (808)
T ss_pred HHhccCCceEEEcCCCcccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCcccccccc
Confidence 999999999999999998887787777788899999999999997543 58999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCCC---CCCCCCCCcceeeeEEeCHHHHHHHHHHHHHHHhhccchhhhhhccccccCccchhhhccc
Q 002960 409 LDTVFKDDFHNPTYPI---GTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGR 485 (862)
Q Consensus 409 ~~~~~~~d~~n~~~~~---~~~~~r~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 485 (862)
+++.|++||+||++.+ +.++||+||||+||+|+||+|.+++++|.+||+.+++.. .+..+.+
T Consensus 376 Ldt~h~~Df~~p~~~~~~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~---------------ll~~~~~ 440 (808)
T PLN02270 376 LDTAHHDDFHQPNFTGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKD---------------ILVQLRE 440 (808)
T ss_pred ccccccccccCcccccccccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCcc---------------chhhhcc
Confidence 9999999999998864 778999999999999999999999999999999987652 2222333
Q ss_pred cccccCccccccCCCCcccCCCCcccccccCCCCCCeeeEEEeeccCCCCCCCCCCchhhhcccccccccccchhHHHHH
Q 002960 486 ISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTA 565 (862)
Q Consensus 486 ~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~a 565 (862)
+.++..|+. |. + .+++.++|+||++||++.+++++||..+++++.+|++++++...++||+.+
T Consensus 441 ~~~~~~P~~----------~~----~---~p~d~~~w~VQvfRSid~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~a 503 (808)
T PLN02270 441 LEDVIIPPS----------PV----M---FPDDHEVWNVQLFRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQDA 503 (808)
T ss_pred cccccCCCC----------cc----c---CCCcCCccccceeecccchhhccCCCCcchhhhcceeccCCCchhhHHHHH
Confidence 333332321 00 0 124568899999999999999999999999999999999998889999999
Q ss_pred HHHHHHhccceEEEeecccccccCCCCcc----ccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCcchh
Q 002960 566 YIQAIRSAQHFIYIENQYFLGSSYAWPSY----KNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQ 641 (862)
Q Consensus 566 y~~~I~~A~~~IyIenqyF~~~~~~wp~~----~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Peg~~~~~~~~ 641 (862)
|++||++||||||||||||++++++|+.+ ++.++.|+|+++|+++|+++++++++|+||||+|+||||.+++.++|
T Consensus 504 Yi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIViP~~peG~~e~~~vq 583 (808)
T PLN02270 504 YIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVVPMWPEGIPESGSVQ 583 (808)
T ss_pred HHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcccchHH
Confidence 99999999999999999999999999755 67899999999999999999999999999999999999999999999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEeeCCCcCCCC-----cccccCCCCcccccccccceeeEEEeEEE
Q 002960 642 EILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAP-----KDVLANNGDKVSDSQKNQRFMIYVHAKGM 716 (862)
Q Consensus 642 ~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~l~~~e~~~-----~~~~~~~~~~~~~~~~~~~~~iyvHSKlm 716 (862)
+||+||++||+++|.+|.++|+++|+..+|.+||+||||+|||... |...+.+++.+..+|+.++++||||||+|
T Consensus 584 ~il~wq~~TM~~~~~~I~~~Lk~~g~~~dp~dyL~ff~L~nre~~~~g~~~P~~~~~~~~~~~~aq~~rr~~I~vH~K~~ 663 (808)
T PLN02270 584 AILDWQRRTMEMMYKDVIQALRAKGLEEDPRNYLTFFCLGNREVKKSGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKMM 663 (808)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccCCccceEEEEeccccccccCcccCCccCCcccchhhhhhhccceeEEEeeeEE
Confidence 9999999999999999999999999866899999999999998752 33344556677888999999999999999
Q ss_pred EEeeeEEEecCcCccccccCCCCCcceEEEeeCCccccccccCCCCchHHHHHHHHHHHhcCCCcccccCCCchHHHHHH
Q 002960 717 IVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQIYGYRKSLWSEHLGMLDNCFEEPESLDCIRKV 796 (862)
Q Consensus 717 IVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~~~~~~~~~~~~~~~lR~~Lw~eHlG~~~~~~~~p~~~~~~~~~ 796 (862)
||||++++|||||||+|||.|+|||||+|..++|.++.+ ...++++|++||++||+||||+.++.|.+|+|++|++++
T Consensus 664 ivDd~~~~iGSaN~n~rS~~G~rDSEIam~a~qp~~~~~--~~~~r~~i~~~R~~Lw~EHLG~~~~~f~~p~s~~cv~~v 741 (808)
T PLN02270 664 IVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLST--RQPARGQIHGFRMSLWYEHLGMLDETFLDPESEECIQKV 741 (808)
T ss_pred EEcCCEEEEeccccccccccCCccchhhhcccCcccccc--ccchHHHHHHHHHHHHHHHhCCChhHhhCCCcHHHHHHH
Confidence 999999999999999999999999999999999987743 346789999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhccccc-CCCccceeeCCcccCCCCCccCCCCCCCCCCCCCceecccCCCCCCCCCC
Q 002960 797 NQIAGENWGRFTAMEF-TPLQGHLLRYPLQVDADGTVSPLPGYEQFPDAGGKIIGVHSMSLPDMLTT 862 (862)
Q Consensus 797 ~~~a~~n~~~~~~~~~-~~~~g~L~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (862)
|++|++||++|+++++ .+|+|||+.||+.|+.||++++|||+++||||+|+|||+++.+||++|||
T Consensus 742 ~~~a~~~w~~y~~~~~~~~~~ghl~~yp~~v~~~g~v~~l~g~~~fpd~~~~v~g~~~~~~p~~ltt 808 (808)
T PLN02270 742 NQIADKYWDLYSSETLEHDLPGHLLRYPIGVASEGDITELPGTEFFPDTKARVLGAKSDYLPPILTT 808 (808)
T ss_pred HHHHHHHHHHhcccccCCCCCcccccCceEecCCCcEeeCCCCCcCCCCCCceeccccccCCccccC
Confidence 9999999999999999 58999999999999999999999999999999999999999999999997
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=2.6e-167 Score=1438.17 Aligned_cols=708 Identities=45% Similarity=0.805 Sum_probs=635.0
Q ss_pred CCcEEEEEECCeEEEeeeeccCCCCCceeeEEEEeecCCC-ceEEEEEEecCCCCCeeeEEEEEeceeeccCce-eEEEE
Q 002960 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGEL-ISRWY 157 (862)
Q Consensus 80 ~dpYv~v~l~~~~~~rT~vi~~t~~P~Wne~f~~~v~~~~-~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~g~~-~~~w~ 157 (862)
.||||+|.+++++++|| .++.||+|+|+|.++|+|.. ++|+|+||| ++++||++.||+++|.+|+. +++||
T Consensus 36 ~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~ 108 (758)
T PLN02352 36 KATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFF 108 (758)
T ss_pred CCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEE
Confidence 59999999999999999 67779999999999999999 799999999 58999999999999999976 99999
Q ss_pred EccCCCCCCCCCCceEEEEeeeecCCCCCccccCCCCCCCCCCccccccccccCCceeEeeeccccCCCCCceecCCCCC
Q 002960 158 DIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKL 237 (862)
Q Consensus 158 ~l~~~~~~~~~~~g~l~l~l~~~~~~~~~~~~~gi~~g~~~~gvp~s~~p~~~gn~v~l~~d~~~~~~~~p~~~l~~g~~ 237 (862)
+|++.+|+|++. .+|+++++|+|+.+++.|.+|+++ +++.|||.++||++.||+|+||||||++++|.|.|.| .
T Consensus 109 ~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~g~~~-~~~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~ 182 (758)
T PLN02352 109 PLIMENGKPNPE-LKLRFMLWFRPAELEPTWCKILEN-GSFQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----C 182 (758)
T ss_pred EcccCCCCCCCC-CEEEEEEEEEEhhhCcchhhcccC-CCcCCcCCcccccCCCCEEEEEecCCCccccCCccee----e
Confidence 999999999854 899999999999999999999987 7999999999999999999999999999999999998 6
Q ss_pred CCcchHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCccccccc
Q 002960 238 YKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGV 317 (862)
Q Consensus 238 y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~ 317 (862)
|.+.+||++|++||++||++|||++|+|+++++|+|++.++.+.+.+.+|+++|++||+|||+||||+||+.++.. .+
T Consensus 183 ~~~~~~f~al~eAI~~Ar~sI~I~gW~~d~~i~L~R~~~~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~--~~ 260 (758)
T PLN02352 183 GSPRKLWEDVYKAIEGAKHLIYIAGWSFNPKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLP--II 260 (758)
T ss_pred cCHHHHHHHHHHHHHhhccEEEEEEEEecCCceeccCcccccccccchHHHHHHHHHHHCCCEEEEEEEcCCCccc--cc
Confidence 7789999999999999999999999999999999998765444334589999999999999999999999988764 35
Q ss_pred ccCCcccCCcHHHHhhhcCCCceEEecCCCCCCccccccccccccccccccceEEeccCCCC--CCcceEEEEccccccC
Q 002960 318 KTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASG--NNRKITAFIGGIDLCD 395 (862)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~--~~~~~vafvGG~dl~~ 395 (862)
+..|+|.++++++.++++|++|+|.++|+... ..++.|+||||+||||+++++ .+|+++|||||+|||+
T Consensus 261 ~~~g~m~th~~~~~~~f~h~~V~~~l~pr~~~---------~~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~ 331 (758)
T PLN02352 261 KNKGVMGTHDEDAFAYFKHTKVVCKLCPRLHK---------KFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCD 331 (758)
T ss_pred ccccccccchHHHHhhccCCceEEeecccccc---------ccccccccccceEEEccCCCCCccccceEEEEcceeccC
Confidence 66788999999999999999999999988653 235779999999999997554 5788999999999999
Q ss_pred cccCCCCcccccCCCcc-cCCCCCCCCCC---CCCCCCCCCcceeeeEEeCHHHHHHHHHHHHHHHhhccchhhhhhccc
Q 002960 396 GRYDTPEHRLFRDLDTV-FKDDFHNPTYP---IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKR 471 (862)
Q Consensus 396 ~R~Dt~~H~l~~~~~~~-~~~d~~n~~~~---~~~~~~r~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~ 471 (862)
|||||++|++++++++. +++||+|+.+. .+.++||+||||+||+|+||||+||.+||+||||++++..
T Consensus 332 GRwDT~~H~l~d~l~t~~~~~Df~~~~~~g~~~~~g~PR~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~-------- 403 (758)
T PLN02352 332 GRYDTEEHSLFRTLNTESHCQDFYQTSIAGAKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPS-------- 403 (758)
T ss_pred CccCCccCCcccccccccccccccccccccccCCCCCCCCCcEeEEEEEECHHHHHHHHHHHHHHhhccCcc--------
Confidence 99999999999999875 56999999886 4678999999999999999999999999999999987642
Q ss_pred cccCccchhhhccccccccCccccccCCCCcccCCCCcccccccCCCCCCeeeEEEeeccCCCCCCCCCCchhhhccccc
Q 002960 472 VSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLI 551 (862)
Q Consensus 472 ~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~ 551 (862)
.+++..++.++..+ |. ....+.++|.||++||++.|++.+||+.
T Consensus 404 -------~l~p~~~~~~~~~~------------p~-------~~~~~~~~w~VQv~RSid~~sa~~~P~~---------- 447 (758)
T PLN02352 404 -------VLVPTSSIRNLVHQ------------PG-------SSESNNRNWKVQVYRSIDHVSASHMPRN---------- 447 (758)
T ss_pred -------ccCCcccccccccC------------CC-------CCcccCCcccceEEEecCccccccCCCC----------
Confidence 11111111111111 10 0012457899999999999998888752
Q ss_pred ccccccchhHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecCCC
Q 002960 552 CAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP 631 (862)
Q Consensus 552 ~~~~~~~e~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~P 631 (862)
..+|+||++||++||++||||||||||||++++++|+.+++.++.|+|+++|+++|+++++++++|+|+||+|+||
T Consensus 448 ----~~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IViP~~P 523 (758)
T PLN02352 448 ----LPVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILIPMWP 523 (758)
T ss_pred ----CchhhHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence 2458999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEeeCCCcCCCC-----cccccCCCCcccccccccc
Q 002960 632 EGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAP-----KDVLANNGDKVSDSQKNQR 706 (862)
Q Consensus 632 eg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~l~~~e~~~-----~~~~~~~~~~~~~~~~~~~ 706 (862)
+|.+++.++|+||+||++||+++|.+|.++|+++|...+|.+||+||||||||... +...|.+.+.+..+|+.++
T Consensus 524 eG~~e~~~vq~il~wq~~TM~~~y~~I~~~L~~~g~~~~P~dYl~F~cL~n~e~~~~g~~~~~~~p~~~~~~~~~~~~rr 603 (758)
T PLN02352 524 EGVPESEPVQDILHWTRETMAMMYKLIGEAIQESGEPGHPRDYLNFFCLANREEKRKGEFVPPYSPHQKTQYWNAQKNRR 603 (758)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCChhHheeeecccccccccCCccccccCCCCCchhhhcccccc
Confidence 99999999999999999999999999999999998766899999999999998652 1223344455566777788
Q ss_pred eeeEEEeEEEEEeeeEEEecCcCccccccCCCCCcceEEEeeCCccccccccCCCCchHHHHHHHHHHHhcCCCcccccC
Q 002960 707 FMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQIYGYRKSLWSEHLGMLDNCFEE 786 (862)
Q Consensus 707 ~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~~~~~~~~~~~~~~~lR~~Lw~eHlG~~~~~~~~ 786 (862)
++||||||+|||||++++|||||||+|||.|+|||||+|++++++++.+ ...++++++||++||+||||+.++.|.+
T Consensus 604 ~~IYVHSKlMIVDD~~viIGSANIN~RSM~G~rDSEia~~~~~~~~~~~---~~~~~~i~~~R~~L~~EHLG~~~~~f~~ 680 (758)
T PLN02352 604 FMVYVHSKLMIVDDTYILIGSANVNQRSMDGCRDTEIAIGCYQSKNGTN---TNNPRDIQAYRMSLWYEHTGLDEESFLE 680 (758)
T ss_pred eeEEEeeeEEEEcCcEEEEcccccccccccCcccchhhhcccccccCCC---cccchHHHHHHHHHHHHHhCCCHHHhcC
Confidence 8999999999999999999999999999999999999999999987632 2345899999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhhhhhhcccccCCCcc-ceeeCCcccCCCCCccCC-CCCCCCCCCCCceecccCCCCCCCCCC
Q 002960 787 PESLDCIRKVNQIAGENWGRFTAMEFTPLQG-HLLRYPLQVDADGTVSPL-PGYEQFPDAGGKIIGVHSMSLPDMLTT 862 (862)
Q Consensus 787 p~~~~~~~~~~~~a~~n~~~~~~~~~~~~~g-~L~~~p~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (862)
|+|+||++++|++|++||++|+++++.+|+| ||+.||+.|+.+|++++| ||+++||||+|+|||+++.+||++|||
T Consensus 681 p~s~ec~~~v~~~~~~~w~~y~~~~~~~~~g~hl~~yp~~v~~~g~v~~l~~g~~~fpd~~~~v~g~~~~~~p~~lt~ 758 (758)
T PLN02352 681 PESLECVRRLRTIGEQMWEIYSGEEVVDMEGVHLVNYPISVTKDGAVEDLADGDGNFPDTKTPVKGRRSKMLPPVFTT 758 (758)
T ss_pred CCCHHHHHHHHHHHHHHHHhhccchhccCCCcccccCCeEecCCcceeecCCCCcCCCCCCCceeccccccCCccccC
Confidence 9999999999999999999999999999999 999999999999999999 699999999999999999999999997
No 4
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=3.2e-149 Score=1278.18 Aligned_cols=776 Identities=45% Similarity=0.743 Sum_probs=680.5
Q ss_pred CCCCceeEeeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEE
Q 002960 6 DSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVT 85 (862)
Q Consensus 6 ~~~~~~~~~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~ 85 (862)
.+.++.+.|+||+|+++|..+..+++++.+..+.+..+.++..+......-......+|.+. ++...+++..+.++|++
T Consensus 65 ~~~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~e~Ylt 143 (887)
T KOG1329|consen 65 SSGSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRS-SLNSSMEKRKTLENYLT 143 (887)
T ss_pred CCcceeeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccC-Ccccchhhhhhccchhe
Confidence 34677888999999999999999998887766555444433321111000000011222221 01111233345799999
Q ss_pred EEECCeEEEeeeeccCC-CCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCC
Q 002960 86 VVVPQATVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (862)
Q Consensus 86 v~l~~~~~~rT~vi~~t-~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~ 163 (862)
+.+....+.+|+++.+. .+|.|+++|.+.++|....+.+++++.+..| ..++|.+++|+..+.+|..+.+|+++++.+
T Consensus 144 ~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d 223 (887)
T KOG1329|consen 144 VVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILDND 223 (887)
T ss_pred eeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeeccC
Confidence 99999999999999996 8999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeeeecCCCCCccccCCCCCCCCCCccccccccccCCceeEeeeccccCCCCCceecCCCC-CCCcch
Q 002960 164 GSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGK-LYKPGT 242 (862)
Q Consensus 164 ~~~~~~~g~l~l~l~~~~~~~~~~~~~gi~~g~~~~gvp~s~~p~~~gn~v~l~~d~~~~~~~~p~~~l~~g~-~y~~~~ 242 (862)
+++..++..+.++++|.+...+..|..++..++++.+++.++++.+.|+.+++|+|+|+.++|.|.+++++|+ .|.+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd~~~ 303 (887)
T KOG1329|consen 224 GKPHQKGSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVDGKK 303 (887)
T ss_pred CccccCCcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEchhh
Confidence 9998888899999999999999999999999999999999999999999999999999999999999999999 788899
Q ss_pred HHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCcccccccccCCc
Q 002960 243 CWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGV 322 (862)
Q Consensus 243 ~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~~~~~~ 322 (862)
||++|++||++||++|||+|||++|+++|+|++..+ .+.||+++|++||++||+|+|||||++++...
T Consensus 304 ~~edi~dAI~~Ar~~IyItgWwl~pel~L~Rp~~~~----~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~-------- 371 (887)
T KOG1329|consen 304 YWEDVADAIENARREIYITGWWLSPELYLVRPPKGP----NDWRLDELLKRKAEEGVRVLILVWKDVTSALG-------- 371 (887)
T ss_pred HHHHHHHHHHhhhhEEEEeccccCceEEEEccCCCC----CceEHHHHHHHHHhCCcEEEEEEeccchhccc--------
Confidence 999999999999999999999999999999987532 25899999999999999999999999987542
Q ss_pred ccCCcHHHHhhhcCCCceEEecCCCCCCccccccccccccccccccceEEeccCCCCCCcceEEEEccccccCcccCCCC
Q 002960 323 MATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPE 402 (862)
Q Consensus 323 ~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt~~ 402 (862)
.+++++++..+++|++|+|.+||+++.++. .++|+||||+||||++ ++||||+|||+|||||++
T Consensus 372 i~S~~~k~~l~~lH~nV~vlr~P~~~~~~~--------~~~wtHHeK~VVVD~~--------v~fvGGlDLC~GRYDT~e 435 (887)
T KOG1329|consen 372 INSHYEKTRLFFLHPNVKVLRCPRHPGSGP--------TTLWTHHEKLVVVDQE--------VAFVGGLDLCDGRYDTPE 435 (887)
T ss_pred cCchhHHHHHhhcCCCeEEEECCCCcCCCC--------ceEEecceEEEEEcce--------eccccceeccccccCCcc
Confidence 346788999999999999999999876432 3579999999999998 999999999999999999
Q ss_pred cccccCCCcccCCCCCCCCCC-----CCCCCCCCCcceeeeEEeCHHHHHHHHHHHHHHHhhccchhhhhhccccccCcc
Q 002960 403 HRLFRDLDTVFKDDFHNPTYP-----IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRD 477 (862)
Q Consensus 403 H~l~~~~~~~~~~d~~n~~~~-----~~~~~~r~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~ 477 (862)
|+|++++++++++||+||++. ++.++||||||||||+|.||+|+||++||+||||++...+. + .+
T Consensus 436 H~L~d~~~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~---------~-~~ 505 (887)
T KOG1329|consen 436 HPLFDTLQTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKK---------P-YD 505 (887)
T ss_pred ccccccccccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccC---------C-CC
Confidence 999999999999999999987 78899999999999999999999999999999999876531 0 02
Q ss_pred chhhhccccccccCccccccCCCCcccCCCCcccccccCCCCCCeeeEEEeeccCCCCCCCCCCchhhhccccccccccc
Q 002960 478 DYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVV 557 (862)
Q Consensus 478 ~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 557 (862)
+.+..+...+++..|+ .| .+++++.|.+|++||++++++.+ ++.....|++|++...
T Consensus 506 ~~~p~L~p~~~~~~~~----------~~---------~~~~~e~~~~q~f~si~~gs~~~----~qvlrs~g~wS~g~~~ 562 (887)
T KOG1329|consen 506 DSLPLLLPISDITGPS----------EP---------NEEDPESWHVQVFRSIDGGSVAG----PQVLRSAGLWSGGINE 562 (887)
T ss_pred ccceeecChhhhcCCC----------Cc---------cccccccccccceeeccCCcccc----hHHhhhhcccccCCCc
Confidence 2222222222222221 11 24667899999999999887654 6677788999999999
Q ss_pred chhHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecCCC--CC--
Q 002960 558 IDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP--EG-- 633 (862)
Q Consensus 558 ~e~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~P--eg-- 633 (862)
+|+||++||+++|++||||||||||||++++..|.. ..|.++++|+++|++|+++++.|+||||+|+|| ||
T Consensus 563 ~e~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~~~~-----~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~ 637 (887)
T KOG1329|consen 563 IEDSIQNAYVKAIRNAEHFIYIENQFFIGSSFNWDS-----VLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDD 637 (887)
T ss_pred hHHHHHHHHHHHHHhccceEEEeeeeEEeeccCCCc-----ccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCC
Confidence 999999999999999999999999999999887753 478889999999999999999999999999999 89
Q ss_pred CCCCcchhhhhHhHHHHHHHHHHHHHHHHHHcCcC-CCCCCcEEEeeCCCcCCCCcccccCCCCcccccccccceeeEEE
Q 002960 634 DPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVD-AHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVH 712 (862)
Q Consensus 634 ~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~gv~-~~p~~yl~~y~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~iyvH 712 (862)
.+.++++|+||+||++||+|+|++|+++|++.|++ .+|.+|++|+|++++|+ .+++.++++||||
T Consensus 638 ~p~~~svqaIl~wQyrTms~g~~sI~~~Lka~g~d~~~yi~f~~lr~~g~~e~--------------~~~~~~~emIYVH 703 (887)
T KOG1329|consen 638 TPGSGSVQAILHWQYRTMSMGYKSIYKALKAVGLDPADYIDFLGLRCLGNREE--------------QAQRLRREMIYVH 703 (887)
T ss_pred CCCcchHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccceeeeeeeeecccc--------------ccccceEEEEEEe
Confidence 78889999999999999999999999999999996 57788888888888764 1356789999999
Q ss_pred eEEEEEeeeEEEecCcCccccccCCCCCcceEEEeeCCccccccccCCCCchHHHHHHHHHHHhcCCCcccccCCCchHH
Q 002960 713 AKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQIYGYRKSLWSEHLGMLDNCFEEPESLDC 792 (862)
Q Consensus 713 SKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~~~~~~~~~~~~~~~lR~~Lw~eHlG~~~~~~~~p~~~~~ 792 (862)
||+|||||+++||||||||+|||.|+|||||||+++||+++++.++..+.|++++|||+||+||||+.++.|++|++.+|
T Consensus 704 sK~mIvDD~~vIIGSANINqRSm~G~RDSEIA~~~~d~~~~~s~m~g~p~~f~~~lR~slw~EHLG~~~d~~~~Pe~~ec 783 (887)
T KOG1329|consen 704 SKLMIVDDEYVIIGSANINQRSMLGNRDSEIAMGIYDTNHVWSKMNGRPYGFIYGLRMSLWREHLGLLDDAFEEPESLEC 783 (887)
T ss_pred eeeEEecCCEEEEeecccchhhccCCccceeEEEEecccchhhccCCcchhHHHHHHHHHHHHHhCCCcccccCcchhhh
Confidence 99999999999999999999999999999999999999999988888889999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcccccCCCccceeeCCcccCCCCCccCCCCCCCCCCCCCceecccCCCCCCCCCC
Q 002960 793 IRKVNQIAGENWGRFTAMEFTPLQGHLLRYPLQVDADGTVSPLPGYEQFPDAGGKIIGVHSMSLPDMLTT 862 (862)
Q Consensus 793 ~~~~~~~a~~n~~~~~~~~~~~~~g~L~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (862)
.+.++...+++|..|++++....+|||+.||+++..+|++.++||.++|||++|++.|.+++.+|++||+
T Consensus 784 ~dpv~d~~~~~W~~~a~~n~~~y~~~f~~yP~~~~~~g~~~~~~~~~~~pd~~~~~~~~~~~~~~~~lt~ 853 (887)
T KOG1329|consen 784 EDPVRDLFEDLWQRYAARNTTIYEGHFRCYPIDVVRTGKVTELPGDETFPDTLGKIIGSKSDALPENLTT 853 (887)
T ss_pred hhhHHHHHHHHHHHHHhhhhhhhhceEEEcccccccCcceeecCCccccccccccccccccccCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986
No 5
>PLN02866 phospholipase D
Probab=100.00 E-value=2.4e-97 Score=869.84 Aligned_cols=544 Identities=31% Similarity=0.478 Sum_probs=412.2
Q ss_pred ccccccc----cCCceeEeeeccccCCCCCceecCCCCCCCcchHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCC
Q 002960 203 NAYFPLR----KGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRP 278 (862)
Q Consensus 203 ~s~~p~~----~gn~v~l~~d~~~~~~~~p~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~ 278 (862)
.+|+|++ .||.+++|+|| .++|++|++||++||++|+|++|||+|+++|+|++.
T Consensus 321 ~SFAP~r~~~~~gN~vk~LvDG--------------------~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~-- 378 (1068)
T PLN02866 321 GSFAPPRGLTEDGSQAQWFIDG--------------------HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPFH-- 378 (1068)
T ss_pred CCcCCCccccCCCCEEEEEeCH--------------------HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecCC--
Confidence 5678888 68999999997 788999999999999999999999999999998642
Q ss_pred CCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCcccccccccCCcccCCcHHHHhhh--cCCCceEEecCCCCCCcccccc
Q 002960 279 LPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFF--KHSSVNCVLAPRYASSKLSYFK 356 (862)
Q Consensus 279 ~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~~~l--~~~~v~v~~~~~~~~~~~~~~~ 356 (862)
++.+.+|+++|++||++||+||||+||+++.... +. ...+.+.| .++||+|..+|... .
T Consensus 379 --D~~g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~--~~--------S~~~k~~L~~lh~gI~V~r~P~~~----~--- 439 (1068)
T PLN02866 379 --DHESSRLDSLLEAKAKQGVQIYILLYKEVALALK--IN--------SVYSKRRLLGIHENVKVLRYPDHF----S--- 439 (1068)
T ss_pred --CchHHHHHHHHHHHHHCCCEEEEEEECccccccc--cC--------chhhHHHHHHhCCCeEEEecCccc----c---
Confidence 1235899999999999999999999999753211 11 11122222 37899987544321 0
Q ss_pred ccccccccccccceEEeccCCCCCCcceEEEEccccccCcccCCCCcccccCCCccc-CCCCCCCCCC------------
Q 002960 357 QQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVF-KDDFHNPTYP------------ 423 (862)
Q Consensus 357 ~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt~~H~l~~~~~~~~-~~d~~n~~~~------------ 423 (862)
....+||||||+||||++ +||+||+|||.|||||++|++.|....+| ++||.||+..
T Consensus 440 --~~~ln~RhHRKIVVIDg~--------IAFvGGiNLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~ 509 (1068)
T PLN02866 440 --SGVYLWSHHEKLVIVDYQ--------ICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDE 509 (1068)
T ss_pred --cCcccccCCCCeEEECCC--------EEEecCcccCCCccCCcccccccccccccCcccccccccccccccccccccc
Confidence 113578999999999998 99999999999999999999988654444 5799999753
Q ss_pred -CCCCCCCCCcceeeeEEeCHHHHHHHHHHHHHHHhhccchhhhhhccccccC------------cc-------------
Q 002960 424 -IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHW------------RD------------- 477 (862)
Q Consensus 424 -~~~~~~r~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~------------~~------------- 477 (862)
++...|||||||+||+|+||+|+||+++|++|||++++.+. +.+....| ..
T Consensus 510 ldR~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~---~~~~~~~ll~p~~~~~~p~~~~~~~~~~~~~~~~~ 586 (1068)
T PLN02866 510 LDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKA---PNEQAIPLLMPHHHMVIPHYLGGSEEEEIESKNQE 586 (1068)
T ss_pred cccccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccC---ccccccccccccccccccccccccccccccccccc
Confidence 45778899999999999999999999999999999886531 00000000 00
Q ss_pred ---------ch---hhhccccccccCcccccc-----------CCCCcc--------------cC---C----CCcc---
Q 002960 478 ---------DY---LIKIGRISWILSPELSLK-----------TNGTTI--------------VP---R----DDNV--- 510 (862)
Q Consensus 478 ---------~~---l~~~~~~~~~~~p~~~~~-----------~~~~~~--------------~p---~----~~~~--- 510 (862)
+. ......++.+++++.... ....+. .| - ++..
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~~P~llP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 666 (1068)
T PLN02866 587 DNQKGIARQDSFSSRSSLQDIPLLLPQEADATDGSGGGHKLNGMNSTNGSLSFSFRKSKIEPVLPDTPMKGFVDDLGFLD 666 (1068)
T ss_pred cccccccccccccccccccccccCCCCCcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 000112222222211000 000000 00 0 0000
Q ss_pred ----------------------------cc----cccCCCCCCeeeEEEeeccCCCCCCCCCCchhhhcccccccccccc
Q 002960 511 ----------------------------VR----VSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVI 558 (862)
Q Consensus 511 ----------------------------~~----~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 558 (862)
+. .......+++.+||+||++.|++.. ..+
T Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~QivRS~~~WS~G~------------------~~~ 728 (1068)
T PLN02866 667 LSVKMSSAERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQVIRSVSQWSAGT------------------SQV 728 (1068)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCeEEEEEEeecccccCCC------------------Cch
Confidence 00 0001123568999999998876522 125
Q ss_pred hhHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCC--CCC-
Q 002960 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPE--GDP- 635 (862)
Q Consensus 559 e~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Pe--g~~- 635 (862)
|+||++||+++|++|+||||||||||+++... +..+.|+|+.+|+++|++|+++++.|+|+||+|++|+ |..
T Consensus 729 E~SI~~AYi~~I~~A~hfIYIENQFFis~~~~-----~~~i~N~I~~AL~~RI~rA~~~~~~frviIViP~~P~F~G~v~ 803 (1068)
T PLN02866 729 EESIHAAYCSLIEKAEHFIYIENQFFISGLSG-----DDTIQNRVLEALYRRILRAHKEKKCFRVIIVIPLLPGFQGGVD 803 (1068)
T ss_pred HHHHHHHHHHHHHhcccEEEEecccccccccc-----cccccchHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcCCCCC
Confidence 89999999999999999999999999987532 3467999999999999999999999999999999996 433
Q ss_pred --CCcchhhhhHhHHHHHHHHHHHHHHHHHHc-CcCCCCCCcEEEeeCCCcCCCCcccccCCCCcccccccccceeeEEE
Q 002960 636 --KTNTVQEILFWQSQTMQMMYSVVAQELREM-QVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVH 712 (862)
Q Consensus 636 --~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~-gv~~~p~~yl~~y~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~iyvH 712 (862)
.+.+++++|+||++||++++.+|+++|+++ |. +|.+||+||+||+++... ++.+ ..+++||||
T Consensus 804 ~~~~~svr~Im~~Q~~tI~rG~~Si~~~L~~~~g~--~p~dYisf~~LRn~~~l~------~~~~------~vteqIYVH 869 (1068)
T PLN02866 804 DGGAASVRAIMHWQYRTICRGKNSILHNLYDLLGP--KTHDYISFYGLRAYGRLF------EGGP------LATSQIYVH 869 (1068)
T ss_pred CccchhHHHHHHHHHHHHHhhHHHHHHHHHHHhCC--CHHHeEeeeccccccccc------CCCc------ccceeeEEE
Confidence 345799999999999999999999999984 53 789999999999987641 1222 345689999
Q ss_pred eEEEEEeeeEEEecCcCccccccCCCCCcceEEEeeCCccccccccC---CCCchHHHHHHHHHHHhcCCCcc---cccC
Q 002960 713 AKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLK---HPHGQIYGYRKSLWSEHLGMLDN---CFEE 786 (862)
Q Consensus 713 SKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~~~~~~~---~~~~~~~~lR~~Lw~eHlG~~~~---~~~~ 786 (862)
||+|||||++++|||||||+|||.|+||||+++.++|++++...+.+ ..+++|++||++||+||||+..+ .+.|
T Consensus 870 sK~~IvDD~~~iiGSaNiN~RS~~G~rDsEia~~~~d~~~~~s~m~G~~~~ag~fa~~lR~~L~~EHLG~~~~~~~~~~D 949 (1068)
T PLN02866 870 SKIMIVDDRAALIGSANINDRSLLGSRDSEIGVVIEDKEFVDSSMNGKPWKAGKFAHSLRLSLWSEHLGLRAGEIDKIID 949 (1068)
T ss_pred eeEEEEcCcEEEEccccccccccccCcCcceeeeeecccccccccCCccccccchhHHHHHHHHHHHhCCCchhhhcccC
Confidence 99999999999999999999999999999999999999876433322 34568999999999999999753 5789
Q ss_pred CCchHHHHH-HHHHHHhhhhhhc---------------------c----------------------------------c
Q 002960 787 PESLDCIRK-VNQIAGENWGRFT---------------------A----------------------------------M 810 (862)
Q Consensus 787 p~~~~~~~~-~~~~a~~n~~~~~---------------------~----------------------------------~ 810 (862)
|.++++++. |+.+|..|..+|. + +
T Consensus 950 P~~d~~~k~~W~~~A~~Nt~Iy~~vF~c~P~d~Vr~~~~~~~~~~~~~~~~gh~~i~lg~~~~~~~~~~~~~~~~~~~~~ 1029 (1068)
T PLN02866 950 PVCDTTYKDLWMATAKTNTDIYQDVFSCIPNDLIHSRAALRQSMASRKEKLGHTTIDLGIAPEKLESYENGDIKSSDPME 1029 (1068)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccHHHHHHHhhhcccccCccccccccccccccccccccchhhhHHH
Confidence 999999974 8999999875431 0 2
Q ss_pred ccCCCccceeeCCcccCCCCCccCCCC
Q 002960 811 EFTPLQGHLLRYPLQVDADGTVSPLPG 837 (862)
Q Consensus 811 ~~~~~~g~L~~~p~~~~~~~~~~~~~g 837 (862)
+++.++||||.||+.|++++++.|.-+
T Consensus 1030 ~l~~I~G~lV~fPL~Fl~~E~L~p~~~ 1056 (1068)
T PLN02866 1030 RLKSVRGHLVSFPLDFMCQEDLRPVFN 1056 (1068)
T ss_pred HHhhceEEEEechhhhhhhccCCCCcC
Confidence 356899999999999999987766544
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=8.7e-46 Score=428.26 Aligned_cols=336 Identities=24% Similarity=0.312 Sum_probs=246.8
Q ss_pred ccccccccCCceeEeeeccccCCCCCceecCCCCCCCcchHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCC
Q 002960 203 NAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRG 282 (862)
Q Consensus 203 ~s~~p~~~gn~v~l~~d~~~~~~~~p~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g 282 (862)
.+.+|...||.+++|.|| +++|+++.++|++||++|+|+.|+|.++-
T Consensus 131 ~~~~p~~~~n~~~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~i~~yi~~~d~------------- 177 (509)
T PRK12452 131 FGGGPAADRTTTKLLTNG--------------------DQTFSEILQAIEQAKHHIHIQYYIYKSDE------------- 177 (509)
T ss_pred ccCCcccCCCEEEEeCCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEeCCc-------------
Confidence 356889999999999997 78999999999999999999999998751
Q ss_pred CcchHHHHHHHHHHcCCEEEEEEeCCCCcccccccccCCcccCCcHHHHhhhcCCCceEEecCCCCCCcccccccccccc
Q 002960 283 GDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGT 362 (862)
Q Consensus 283 ~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~ 362 (862)
.+..+.++|.+||+|||+||||+ |+.||.. ......+.|+++||+|..+.+... .++ ....
T Consensus 178 ~g~~i~~aL~~aa~rGV~VRiL~-D~~Gs~~------------~~~~~~~~L~~aGi~v~~f~P~~~---~~~---~~~~ 238 (509)
T PRK12452 178 IGTKVRDALIKKAKDGVIVRFLY-DGLGSNT------------LRRRFLQPMKEAGIEIVEFDPIFS---AWL---LETV 238 (509)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEE-ECCCCCC------------CCHHHHHHHHhCCeEEEEecCccc---ccc---cccc
Confidence 23799999999999999999996 9988742 123567778899999986532211 111 1246
Q ss_pred ccccccceEEeccCCCCCCcceEEEEccccccCcccCCCCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEeC
Q 002960 363 IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG 442 (862)
Q Consensus 363 ~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~G 442 (862)
++|||+|++|||++ +||+||+|+++ .|.... ....+|||+|++++|
T Consensus 239 n~RnHRKi~VIDg~--------ia~~GG~Ni~d-~y~~~~-------------------------~~~~~WrD~~~~i~G 284 (509)
T PRK12452 239 NYRNHRKIVIVDGE--------IGFTGGLNVGD-EYLGRS-------------------------KKFPVWRDSHLKVEG 284 (509)
T ss_pred cCCCCCeEEEEcCC--------EEEeCCcccch-hhcCCC-------------------------CCCCCceEEEEEEEC
Confidence 78999999999998 99999999999 443221 124689999999999
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhhhccccccCccchhhhccccccccCccccccCCCCcccCCCCcccccccCCCCCCe
Q 002960 443 PAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENW 522 (862)
Q Consensus 443 paa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 522 (862)
|+|.++...|.++|+.+++... ...|. .. ..+. ..|.. ....+..
T Consensus 285 p~V~~l~~~F~~dW~~~~~~~~-------~~~~~--------~~---~~~~---------~~~~~--------~~~~~~~ 329 (509)
T PRK12452 285 KALYKLQAIFLEDWLYASSGLN-------TYSWD--------PF---MNRQ---------YFPGK--------EISNAEG 329 (509)
T ss_pred HHHHHHHHHHHHHHHHhhCccc-------ccccc--------cc---cchh---------cCCCc--------cccCCCe
Confidence 9999999999999998754310 00000 00 0000 01110 0001344
Q ss_pred eeEEEeeccCCCCCCCCCCchhhhcccccccccccchhHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcCCc
Q 002960 523 HVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNL 602 (862)
Q Consensus 523 ~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n~ 602 (862)
.+|++.+- |.. .+.++.++|+++|.+||++|||++|||++.
T Consensus 330 ~~q~~~sg--------p~~----------------~~~~i~~~~l~~I~~A~~~I~I~tpYf~pd--------------- 370 (509)
T PRK12452 330 AVQIVASG--------PSS----------------DDKSIRNTLLAVMGSAKKSIWIATPYFIPD--------------- 370 (509)
T ss_pred EEEEEeCC--------CCc----------------hhHHHHHHHHHHHHHhhhEEEEECCccCCC---------------
Confidence 68888763 211 146899999999999999999999999954
Q ss_pred cHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCcchhhhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEeeCCC
Q 002960 603 IPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGK 682 (862)
Q Consensus 603 i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~l~~ 682 (862)
..+..++..|++ +||+|+||+|..+ ++ .+.++..++ .++.|.++|+++ | .|
T Consensus 371 --~~l~~aL~~Aa~--rGV~Vrii~p~~~----D~----~~~~~a~~~-------~~~~L~~aGv~I----~--~y---- 421 (509)
T PRK12452 371 --QETLTLLRLSAI--SGIDVRILYPGKS----DS----IISDQASQS-------YFTPLLKAGASI----Y--SY---- 421 (509)
T ss_pred --HHHHHHHHHHHH--cCCEEEEEcCCCC----Ch----HHHHHHHHH-------HHHHHHHcCCEE----E--Ee----
Confidence 244555655544 5699999999532 22 233444443 478888999864 1 22
Q ss_pred cCCCCcccccCCCCcccccccccceeeEEEeEEEEEeeeEEEecCcCccccccCCCCCcceEEEeeCCccc
Q 002960 683 REEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (862)
Q Consensus 683 ~e~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 753 (862)
.+.++|+|+|||||++++|||+|||.||+.. +.|+++.+++++.+
T Consensus 422 ------------------------~~~~lHaK~~ivD~~~a~vGS~Nld~RS~~~--n~E~~~~i~~~~~~ 466 (509)
T PRK12452 422 ------------------------KDGFMHAKIVLVDDKIATIGTANMDVRSFEL--NYEIISVLYESETV 466 (509)
T ss_pred ------------------------cCCCeeeeEEEECCCEEEEeCcccCHhHhhh--hhhccEEEECHHHH
Confidence 1358999999999999999999999999985 59999999997544
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=9.2e-45 Score=419.47 Aligned_cols=333 Identities=24% Similarity=0.330 Sum_probs=245.2
Q ss_pred ccccccccCCceeEeeeccccCCCCCceecCCCCCCCcchHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCC
Q 002960 203 NAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRG 282 (862)
Q Consensus 203 ~s~~p~~~gn~v~l~~d~~~~~~~~p~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g 282 (862)
.+.+|...||.+++|.|| +++|++++++|++||++|+|+.|++.++-
T Consensus 107 ~~~~~~~~~n~v~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~l~~yi~~~d~------------- 153 (483)
T PRK01642 107 LQGIPGLKGNQLRLLTNG--------------------DETFQAIIRDIELARHYILMEFYIWRPDG------------- 153 (483)
T ss_pred ccCCCccCCCEEEEEcCH--------------------HHHHHHHHHHHHHhhcEEEEEEEEEccCC-------------
Confidence 456789999999999997 78899999999999999999999987651
Q ss_pred CcchHHHHHHHHHHcCCEEEEEEeCCCCcccccccccCCcccCCcHHHHhhhcCCCceEEec-CCCCCCccccccccccc
Q 002960 283 GDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLA-PRYASSKLSYFKQQIVG 361 (862)
Q Consensus 283 ~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~-~~~~~~~~~~~~~~~~~ 361 (862)
.+.++.++|.+||+|||+||||+ |+.|+... ..+...+.|+..||+|..+ |... ..++ ...
T Consensus 154 ~g~~i~~aL~~aa~rGV~VriL~-D~~Gs~~~-----------~~~~~~~~L~~~Gi~v~~~~p~~~---~~~~---~~~ 215 (483)
T PRK01642 154 LGDQVAEALIAAAKRGVRVRLLY-DSIGSFAF-----------FRSPYPEELRNAGVEVVEFLKVNL---GRVF---RRR 215 (483)
T ss_pred cHHHHHHHHHHHHHCCCEEEEEE-ECCCCCCC-----------CcHHHHHHHHHCCCEEEEecCCCc---cccc---ccc
Confidence 23799999999999999999996 99887531 1223566788899999865 3211 1111 124
Q ss_pred cccccccceEEeccCCCCCCcceEEEEccccccCcccCCCCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEe
Q 002960 362 TIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLD 441 (862)
Q Consensus 362 ~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~ 441 (862)
.++++|+|++|||++ +||+||+|+++..|-+.. ....+|||+|++++
T Consensus 216 ~n~RnHrKi~VIDg~--------ia~~Gg~Ni~d~~y~~~~-------------------------~~~~~w~D~~~~i~ 262 (483)
T PRK01642 216 LDLRNHRKIVVIDGY--------IAYTGSMNVVDPEYFKQD-------------------------PGVGQWRDTHVRIE 262 (483)
T ss_pred cccccCceEEEEcCC--------EEEeCCcccCCHHHhCCC-------------------------CCCCCcEEEEEEEE
Confidence 578999999999998 999999999993332211 12368999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccchhhhhhccccccCccchhhhccccccccCccccccCCCCcccCCCCcccccccCCCCCC
Q 002960 442 GPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPEN 521 (862)
Q Consensus 442 Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 521 (862)
||+|.++...|.++|+.+++... .. . .|.. ..++ ....+.
T Consensus 263 Gp~v~~l~~~F~~dW~~~~~~~~---------------~~---~-----~~~~--------~~~~---------~~~~~~ 302 (483)
T PRK01642 263 GPVVTALQLIFAEDWEWETGERI---------------LP---P-----PPDV--------LIMP---------FEEASG 302 (483)
T ss_pred cHHHHHHHHHHHHHHHHHhCccc---------------CC---C-----Cccc--------ccCC---------ccCCCC
Confidence 99999999999999998764310 00 0 0000 0000 011123
Q ss_pred eeeEEEeeccCCCCCCCCCCchhhhcccccccccccchhHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcCC
Q 002960 522 WHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADN 601 (862)
Q Consensus 522 ~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n 601 (862)
..+|++.+. |.. .+.+++++|+++|.+||++|||++|||++.
T Consensus 303 ~~~qi~~sg--------P~~----------------~~~~~~~~~~~~I~~A~~~I~I~tpYfip~-------------- 344 (483)
T PRK01642 303 HTVQVIASG--------PGD----------------PEETIHQFLLTAIYSARERLWITTPYFVPD-------------- 344 (483)
T ss_pred ceEEEEeCC--------CCC----------------hhhHHHHHHHHHHHHhccEEEEEcCCcCCC--------------
Confidence 468888652 221 146799999999999999999999999954
Q ss_pred ccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCcchhhhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEeeCC
Q 002960 602 LIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLG 681 (862)
Q Consensus 602 ~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~l~ 681 (862)
..+..++..|++ +||+|+||+|..+ +. .+.++..++ .++.|.++|+++ |.+
T Consensus 345 ---~~i~~aL~~Aa~--rGV~Vril~p~~~----d~----~~~~~~~~~-------~~~~L~~~Gv~I--------~~y- 395 (483)
T PRK01642 345 ---EDLLAALKTAAL--RGVDVRIIIPSKN----DS----LLVFWASRA-------FFTELLEAGVKI--------YRY- 395 (483)
T ss_pred ---HHHHHHHHHHHH--cCCEEEEEeCCCC----Cc----HHHHHHHHH-------HHHHHHHcCCEE--------EEe-
Confidence 245566666655 5599999999643 22 233444444 367788889864 211
Q ss_pred CcCCCCcccccCCCCcccccccccceeeEEEeEEEEEeeeEEEecCcCccccccCCCCCcceEEEeeCCccc
Q 002960 682 KREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (862)
Q Consensus 682 ~~e~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 753 (862)
...++|+|+|||||++++|||+|||.||+.. |.|+++.++|++.+
T Consensus 396 -------------------------~~~~~HaK~~ivD~~~~~vGS~N~d~rS~~~--N~E~~~~i~d~~~~ 440 (483)
T PRK01642 396 -------------------------EGGLLHTKSVLVDDELALVGTVNLDMRSFWL--NFEITLVIDDTGFA 440 (483)
T ss_pred -------------------------CCCceEeEEEEECCCEEEeeCCcCCHhHHhh--hhcceEEEECHHHH
Confidence 1348999999999999999999999999984 59999999998544
No 8
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=2.9e-43 Score=396.14 Aligned_cols=341 Identities=19% Similarity=0.260 Sum_probs=243.1
Q ss_pred ccccCCceeEeeeccccCCCCCceecCCCCCCCcchHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcch
Q 002960 207 PLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLT 286 (862)
Q Consensus 207 p~~~gn~v~l~~d~~~~~~~~p~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~ 286 (862)
+.+.||+++++.|| +++|++++++|++||++|+|+.|+|.++- .+..
T Consensus 3 ~~~~gN~v~ll~~G--------------------~e~~~~l~~~I~~Ak~~I~i~~yi~~~d~-------------~g~~ 49 (411)
T PRK11263 3 SWREGNRIQLLENG--------------------EQYYPRVFEAIAAAQEEILLETFILFEDK-------------VGKQ 49 (411)
T ss_pred cccCCCeEEEEeCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEecCc-------------hHHH
Confidence 67889999999997 78899999999999999999999987651 1378
Q ss_pred HHHHHHHHHHcCCEEEEEEeCCCCcccccccccCCcccCCcHHHHhhhcCCCceEEecCCCCCCcccccccccccccccc
Q 002960 287 LGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTH 366 (862)
Q Consensus 287 l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~sh 366 (862)
|.++|.+||+|||+||||+ |..++.. .++...+.|.+.||++..+.+.+. ++. .....+.++
T Consensus 50 l~~aL~~aa~rGV~Vril~-D~~gs~~------------~~~~~~~~L~~aGv~v~~~~p~~~----~~~-~~~~~~~R~ 111 (411)
T PRK11263 50 LHAALLAAAQRGVKVEVLV-DGYGSPD------------LSDEFVNELTAAGVRFRYFDPRPR----LLG-MRTNLFRRM 111 (411)
T ss_pred HHHHHHHHHHCCCEEEEEE-ECCCCCC------------CCHHHHHHHHHCCeEEEEeCCccc----ccc-cccccccCC
Confidence 9999999999999999997 8887643 124567778899999986532211 110 011223589
Q ss_pred ccceEEeccCCCCCCcceEEEEccccccCcccCCCCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEeCHHHH
Q 002960 367 HQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAY 446 (862)
Q Consensus 367 HqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gpaa~ 446 (862)
|+|++|||++ +||+||+|+++.++.. + ...+|+|++++|+||+|.
T Consensus 112 HrKiiVIDg~--------~a~vGg~N~~~~~~~~----------------~-----------g~~~w~D~~v~i~Gp~V~ 156 (411)
T PRK11263 112 HRKIVVIDGR--------IAFVGGINYSADHLSD----------------Y-----------GPEAKQDYAVEVEGPVVA 156 (411)
T ss_pred cceEEEEcCC--------EEEEcCeEchHhhccc----------------c-----------CCCCceEEEEEEECHHHH
Confidence 9999999998 9999999999844321 1 124799999999999999
Q ss_pred HHHHHHHHHHHhhccchhhhhhccccccCccchhhhccccccccCccccccCCCCcccCCCCcccccccCCCCCCeeeEE
Q 002960 447 DVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQI 526 (862)
Q Consensus 447 dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv 526 (862)
++...|.+.|....... ..|... +. .+. ....+...+|+
T Consensus 157 ~l~~~f~~~w~~~~~~~---------~~~~~~-------------~~----------~~~---------~~~~g~~~~~~ 195 (411)
T PRK11263 157 DIHQFELEALPGQSAAR---------RWWRRH-------------HR----------AEE---------NRQPGEAQALL 195 (411)
T ss_pred HHHHHHHHHHhhcccch---------hhhccc-------------cc----------Ccc---------cCCCCCeEEEE
Confidence 99999999997432110 000000 00 000 01123345666
Q ss_pred EeeccCCCCCCCCCCchhhhcccccccccccchhHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcCCccHHH
Q 002960 527 FRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPME 606 (862)
Q Consensus 527 ~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~ 606 (862)
+.+- |. .....|+.+|+.+|.+||+.|||+|+||++. ..
T Consensus 196 v~~~--------p~----------------~~~~~i~~~~~~~i~~A~~~I~I~tpYf~p~-----------------~~ 234 (411)
T PRK11263 196 VWRD--------NE----------------EHRDDIERHYLKALRQARREVIIANAYFFPG-----------------YR 234 (411)
T ss_pred EECC--------Cc----------------chHHHHHHHHHHHHHHhceEEEEEecCcCCC-----------------HH
Confidence 6431 11 1136799999999999999999999999863 24
Q ss_pred HHHHHHHHHHcCCCeEEEEEecCCCCCCCCCcchhhhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEeeCCCcCCC
Q 002960 607 LALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEA 686 (862)
Q Consensus 607 l~~~i~~~~~~~~~v~V~Ivlp~~Peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~l~~~e~~ 686 (862)
+..+|..|.+ +||+|+||+|.. ++. .++.+..+. +++.|.++|+++ |.+
T Consensus 235 l~~aL~~Aa~--RGV~V~ii~~~~----~d~----~~~~~a~~~-------~~~~Ll~~Gv~I--------~~y------ 283 (411)
T PRK11263 235 LLRALRNAAR--RGVRVRLILQGE----PDM----PIVRVGARL-------LYNYLLKGGVQI--------YEY------ 283 (411)
T ss_pred HHHHHHHHHH--CCCEEEEEeCCC----CCc----HHHHHHHHH-------HHHHHHHCCCEE--------EEe------
Confidence 5556666655 559999999953 332 233343333 477888999864 311
Q ss_pred CcccccCCCCcccccccccceeeEEEeEEEEEeeeEEEecCcCccccccCCCCCcceEEEeeCCccccccccCCCCchHH
Q 002960 687 PKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQIY 766 (862)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~~~~~~~~~~~~~~ 766 (862)
. ..++|+|+|||||++++|||+|||.|||..| .|+++.++|++++ +++.
T Consensus 284 ------------------~--~~~lHaK~~viD~~~~~vGS~Nld~rS~~lN--~E~~~~i~d~~~a---------~~l~ 332 (411)
T PRK11263 284 ------------------C--RRPLHGKVALMDDHWATVGSSNLDPLSLSLN--LEANLIIRDRAFN---------QTLR 332 (411)
T ss_pred ------------------c--CCCceeEEEEECCCEEEEeCCcCCHHHhhhh--hhcCEEEeCHHHH---------HHHH
Confidence 0 2479999999999999999999999999854 9999999998654 1344
Q ss_pred HHHHHHHHHhc
Q 002960 767 GYRKSLWSEHL 777 (862)
Q Consensus 767 ~lR~~Lw~eHl 777 (862)
....+++++|.
T Consensus 333 ~~~~~~~~~~s 343 (411)
T PRK11263 333 DNLNGLIAADC 343 (411)
T ss_pred HHHHHHHHhhC
Confidence 44555666554
No 9
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=100.00 E-value=3.9e-33 Score=321.68 Aligned_cols=337 Identities=25% Similarity=0.327 Sum_probs=232.6
Q ss_pred ccCCceeEeeeccccCCCCCceecCCCCCCCcchHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHH
Q 002960 209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG 288 (862)
Q Consensus 209 ~~gn~v~l~~d~~~~~~~~p~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~ 288 (862)
..++.++++.++ .+.|.++.++|++|+++|+++.|.+.++. .+..+.
T Consensus 57 ~~~~~~~~l~~~--------------------~~~~~~~~~~i~~a~~~I~~~~~i~~~d~-------------~~~~i~ 103 (438)
T COG1502 57 ISGNGVDLLKDG--------------------ADAFAALIELIEAAKKSIYLQYYIWQDDE-------------LGREIL 103 (438)
T ss_pred CCCCceEEecCH--------------------HHHHHHHHHHHHHHhhEEEEEEEEEeCCh-------------hHHHHH
Confidence 678889998886 78899999999999999999999887651 237999
Q ss_pred HHHHHHHHcCCEEEEEEeCCCCcccccccccCCcccCCcHHHHhhhcCCCc-eEEecCCCCCCccccccccccccccccc
Q 002960 289 ELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSV-NCVLAPRYASSKLSYFKQQIVGTIFTHH 367 (862)
Q Consensus 289 ~lL~~kA~rGV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~v-~v~~~~~~~~~~~~~~~~~~~~~~~shH 367 (862)
++|.++|++||+||+|+ |+.++... ........++++++ .+....+.... .. .....+.++|
T Consensus 104 ~~l~~~a~~gv~vr~l~-D~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~~--~~---~~~~~~~r~H 166 (438)
T COG1502 104 DALIEAAKRGVEVRLLL-DDIGSTRG-----------LLKSLLALLKRAGIEEVRLFNPASPR--PL---RFRRLNRRLH 166 (438)
T ss_pred HHHHHHHHcCCEEEEEE-ecCCCccc-----------ccHHHHHHHhcCCceEEEecCCcccc--cc---hhhhhhcccc
Confidence 99999999999999998 88765221 12346677888999 65543222110 00 1123567899
Q ss_pred cceEEeccCCCCCCcceEEEEccccccCcccCCCCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEeCHHHHH
Q 002960 368 QKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYD 447 (862)
Q Consensus 368 qK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gpaa~d 447 (862)
+|++|||++ ++|+||.|+.+.++.... ...+|+|.+++++||+|.+
T Consensus 167 ~K~~viD~~--------i~~vGg~N~~d~y~~~~~--------------------------~~~~~~D~~~~~~g~~v~~ 212 (438)
T COG1502 167 RKIVVIDGK--------VAFVGGANIGDEYFHKDK--------------------------GLGYWRDLHVRITGPAVAD 212 (438)
T ss_pred ceEEEEcCC--------EEEecCcccchhhhccCc--------------------------CcccceeeeEEEECHHHHH
Confidence 999999998 999999999996653210 1258999999999999999
Q ss_pred HHHHHHHHHHhhccchhhhhhccccccCccchhhhccccccccCccccccCCCCcccCCCCcccccccCCCCCCeeeEEE
Q 002960 448 VLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIF 527 (862)
Q Consensus 448 l~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~ 527 (862)
+..+|.++|+....... .+ ... ..+. .+.. .. ........+|++
T Consensus 213 l~~~f~~~w~~~~~~~~--------------~~---~~~---~~~~----------~~~~--~~----~~~~~~~~~~~~ 256 (438)
T COG1502 213 LARLFIQDWNLESGSSK--------------PL---LAL---VRPP----------LQSL--SL----LPVGRGSTVQVL 256 (438)
T ss_pred HHHHHHHHhhhccCcCc--------------cc---ccc---cccc----------cccc--cc----cccccCcceEEE
Confidence 99999999998643210 00 000 0000 0000 00 000112225676
Q ss_pred eeccCCCCCCCCCCchhhhcccccccccccchhHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcCCccHHHH
Q 002960 528 RSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMEL 607 (862)
Q Consensus 528 rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l 607 (862)
.+.+.. ..+. ...++...|+.+|.+|+++|+|++|||++. .++
T Consensus 257 ~~~P~~---~~~~-----------------~~~~~~~~~~~~i~~A~~~i~i~~pYf~~~-----------------~~~ 299 (438)
T COG1502 257 SSGPDK---GLGS-----------------ELIELNRLLLKAINSARESILIATPYFVPD-----------------REL 299 (438)
T ss_pred ecCCcc---ccch-----------------hhhhHHHHHHHHHHhhceEEEEEcCCcCCC-----------------HHH
Confidence 653211 0000 011255899999999999999999999964 245
Q ss_pred HHHHHHHHHcCCCeEEEEEecCCCCCCCCCcchhhhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEeeCCCcCCCC
Q 002960 608 ALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAP 687 (862)
Q Consensus 608 ~~~i~~~~~~~~~v~V~Ivlp~~Peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~l~~~e~~~ 687 (862)
..++..+.+ +||+|+|++|.. +.++ ..+.++..+. .+..|.+.|+++ |.+
T Consensus 300 ~~al~~a~~--~Gv~V~ii~~~~--~~~d----~~~~~~~~~~-------~~~~l~~~gv~i--------~~~------- 349 (438)
T COG1502 300 LAALKAAAR--RGVDVRIIIPSL--GAND----SAIVHAAYRA-------YLKELLEAGVKV--------YEY------- 349 (438)
T ss_pred HHHHHHHHh--cCCEEEEEeCCC--CCCC----hHHHHHHHHH-------HHHHHHHhCCEE--------EEe-------
Confidence 566666654 559999999953 1222 2233333333 477788888753 322
Q ss_pred cccccCCCCccccccccccee-eEEEeEEEEEeeeEEEecCcCccccccCCCCCcceEEEeeCCccc
Q 002960 688 KDVLANNGDKVSDSQKNQRFM-IYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (862)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~-iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 753 (862)
.. .++|+|+|||||++++|||+|||.||+..| +|+++.|+|++++
T Consensus 350 -------------------~~g~~lH~K~~iiD~~~~~vGS~N~~~rS~~lN--~E~~~~i~d~~~~ 395 (438)
T COG1502 350 -------------------PGGAFLHSKVMIIDDRTVLVGSANLDPRSLRLN--FEVGLVIEDPELA 395 (438)
T ss_pred -------------------cCCCcceeeEEEEcCCEEEEeCCcCCHhHHHHh--hhheeEEeCHHHH
Confidence 12 499999999999999999999999999955 9999999998433
No 10
>PHA02820 phospholipase-D-like protein; Provisional
Probab=100.00 E-value=7.1e-33 Score=313.22 Aligned_cols=326 Identities=15% Similarity=0.189 Sum_probs=210.5
Q ss_pred chHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCcccccccccC
Q 002960 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (862)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~~~~ 320 (862)
...|+.+.++|.+||++|+|+.+.|.++- .. ... .+.+|.++|.+||+|||+||||+ |..+.
T Consensus 25 ~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d-----~~-~~~--~G~~i~~aL~~aA~rGV~VRIL~-d~~~~--------- 86 (424)
T PHA02820 25 LSTFNFWREILSNTTKTLDISSFYWSLSD-----EV-GTN--FGTMILNEIIQLPKRGVRVRIAV-NKSNK--------- 86 (424)
T ss_pred CCHHHHHHHHHHhhCcEEEEEeEEEecCc-----cc-cch--hHHHHHHHHHHHHHCCCEEEEEE-CCCCC---------
Confidence 45799999999999999999999887420 00 001 13789999999999999999997 75321
Q ss_pred CcccCCcHHHHhhhcCCCceEEecCCCCCCccccccccccccccccccceEEeccCCCCCCcceEEEEccccccCcccCC
Q 002960 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (862)
Q Consensus 321 ~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt 400 (862)
.....+.|+..||++..+.... ....++|+|++|||++ ++|+||.|+.+ |+.+
T Consensus 87 ------~~~~~~~L~~aGv~v~~~~~~~------------~~~~~~HrK~~VIDg~--------~~~iGS~Nid~-rsl~ 139 (424)
T PHA02820 87 ------PLKDVELLQMAGVEVRYIDITN------------ILGGVLHTKFWISDNT--------HIYLGSANMDW-RSLT 139 (424)
T ss_pred ------chhhHHHHHhCCCEEEEEecCC------------CCcccceeeEEEECCC--------EEEEeCCcCCh-hhhh
Confidence 1123456788999997653211 0124699999999998 99999999977 6532
Q ss_pred CCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEE--eCHHHHHHHHHHHHHHHhhccchhhhhhccccccCccc
Q 002960 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL--DGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD 478 (862)
Q Consensus 401 ~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v--~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~ 478 (862)
..+|+++++ +||+|.++.+.|.+.|+.+++.. ...|...
T Consensus 140 -------------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~--------~~~~~~~ 180 (424)
T PHA02820 140 -------------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNL--------PYNWKNF 180 (424)
T ss_pred -------------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccCC--------CCccccc
Confidence 224777777 79999999999999998765321 0011100
Q ss_pred hhhhccccccccCccccccCCCCcccCCCCcccccccCCCCCCeeeEEEeeccCCCCCCCCCCchhhhcccccccccccc
Q 002960 479 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVI 558 (862)
Q Consensus 479 ~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 558 (862)
+ |. ..+... +... ...+....+++.+ + |... . +. .
T Consensus 181 -------~-----~~---------~~~~~~--p~~~--~~~~~~~~~~~ss---s-----P~~~---~------~~---~ 215 (424)
T PHA02820 181 -------Y-----PL---------YYNTDH--PLSL--NVSGVPHSVFIAS---A-----PQQL---C------TM---E 215 (424)
T ss_pred -------c-----cc---------ccccCC--Cccc--ccCCccceEEEeC---C-----Chhh---c------CC---C
Confidence 0 00 000000 0000 0011111233332 1 1100 0 00 0
Q ss_pred hhHHHHHHHHHHHhccceEEEeecccccccC-------CCCccccCCcCCccHHHHHHHHHH-HHHcCCCeEEEEEecCC
Q 002960 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSY-------AWPSYKNAGADNLIPMELALKIAS-KIRANERFAVYVIIPMW 630 (862)
Q Consensus 559 e~sI~~ay~~~I~~A~~~IyIenqyF~~~~~-------~wp~~~~~~~~n~i~~~l~~~i~~-~~~~~~~v~V~Ivlp~~ 630 (862)
.....++|+.+|.+||++|||+++||++... .|| .+..+|.+ |+ .+||+|+||+|.|
T Consensus 216 r~~~~~~~l~~I~~Ak~~I~I~tpyfvP~~~~~~~~~~yw~-------------~i~~AL~~AA~--~RGV~VriLvp~~ 280 (424)
T PHA02820 216 RTNDLTALLSCIRNASKFVYVSVMNFIPIIYSKAGKILFWP-------------YIEDELRRAAI--DRKVSVKLLISCW 280 (424)
T ss_pred CCchHHHHHHHHHHHhhEEEEEEccccceeeccCCcccchH-------------HHHHHHHHHHH--hCCCEEEEEEecc
Confidence 1345799999999999999999999998722 343 34445543 32 3669999999987
Q ss_pred CCCCCCCcchhhhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEeeCCCcCCCCcccccCCCCcccccccccceeeE
Q 002960 631 PEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIY 710 (862)
Q Consensus 631 Peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~iy 710 (862)
+.. ..+ .++... .++.|.+.|+++ ++++|....+.. ......+
T Consensus 281 ~d~----~~~----~~a~~~-------~l~~L~~~gv~I----~Vk~y~~p~~~~------------------~~~~~~f 323 (424)
T PHA02820 281 QRS----SFI----MRNFLR-------SIAMLKSKNINI----EVKLFIVPDADP------------------PIPYSRV 323 (424)
T ss_pred CCC----Ccc----HHHHHH-------HHHHHhccCceE----EEEEEEcCcccc------------------cCCccee
Confidence 532 211 122221 256677788876 677775421110 0011459
Q ss_pred EEeEEEEEeeeEEEecCcCccccccCCCCCcceEEEeeCC
Q 002960 711 VHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQP 750 (862)
Q Consensus 711 vHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~ 750 (862)
+|+|+||||+ ++.|||||||.||+..| .|+++.++++
T Consensus 324 ~HaK~~vvD~-~a~IGTsN~D~rsf~~n--~ev~~~i~~~ 360 (424)
T PHA02820 324 NHAKYMVTDK-TAYIGTSNWTGNYFTDT--CGVSINITPD 360 (424)
T ss_pred eeeeEEEEcc-cEEEECCcCCHHHHhcc--CcEEEEEecC
Confidence 9999999997 69999999999999966 9999999876
No 11
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=100.00 E-value=2.1e-31 Score=302.01 Aligned_cols=358 Identities=16% Similarity=0.142 Sum_probs=214.6
Q ss_pred ccCCceeEeeeccccCCCCCceecCCCCCCCcchHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHH
Q 002960 209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG 288 (862)
Q Consensus 209 ~~gn~v~l~~d~~~~~~~~p~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~ 288 (862)
..++.++++.++ .++|++|+++|++|+++|+|+.|+|..| . .+..|.
T Consensus 22 ~~~~~v~~l~~~--------------------~~f~~~Ll~~I~~Ak~~I~l~~y~~~~D-----------~--~g~~il 68 (451)
T PRK09428 22 QSPDDVETLYSP--------------------ADFRETLLEKIASAKKRIYIVALYLEDD-----------E--AGREIL 68 (451)
T ss_pred cCcccEEEEcCH--------------------HHHHHHHHHHHHhcCCeEEEEEEEecCC-----------c--hHHHHH
Confidence 367889999886 7889999999999999999999999775 1 247999
Q ss_pred HHHHHHHH--cCCEEEEEEeCCCCccc-ccccccCCcccCCcHHHHhhhcC--CCceEEecCCCCCCccccccccccccc
Q 002960 289 ELLKYKSE--EGVRVLLLVWDDKTSHD-KLGVKTPGVMATHDEETKKFFKH--SSVNCVLAPRYASSKLSYFKQQIVGTI 363 (862)
Q Consensus 289 ~lL~~kA~--rGV~VriLvwd~~~s~~-~~~~~~~~~~~~~~~~~~~~l~~--~~v~v~~~~~~~~~~~~~~~~~~~~~~ 363 (862)
++|.+|++ +||+|+||+ |...+.. ..+... ...+....+.|+. +|+++.++.. |.. ....+
T Consensus 69 ~AL~~a~~~~~gv~VrvLv-D~~Ra~Rg~iG~~~----~~~~~~~~~~l~~~~~gv~v~~f~~-p~~--------~~e~~ 134 (451)
T PRK09428 69 DALYQAKQQNPELDIKVLV-DWHRAQRGLIGAAA----SNTNADWYCEMAQEYPGVDIPVYGV-PVN--------TREAL 134 (451)
T ss_pred HHHHHHHhcCCCcEEEEEE-EcccccccccccCC----CCcCHHHHHHHHHhCCCceEEEcCC-ccc--------cchhh
Confidence 99998754 899999998 8631110 000000 0012344455553 3689877531 111 01235
Q ss_pred cccccceEEeccCCCCCCcceEEEEccccccCcccCCCCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEeCH
Q 002960 364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP 443 (862)
Q Consensus 364 ~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gp 443 (862)
.++|+|++|||++ |+|+| .||.+.+... + . ....|..++|+||
T Consensus 135 gr~HrKi~IiD~~--------v~ysG-aNi~d~Yl~~--~-------------------------~-~~r~Dry~~i~g~ 177 (451)
T PRK09428 135 GVLHLKGFIIDDT--------VLYSG-ASLNNVYLHQ--H-------------------------D-KYRYDRYHLIRNA 177 (451)
T ss_pred hhceeeEEEECCC--------EEEec-ccccHHHhcC--C-------------------------c-ccCcceEEEEeCc
Confidence 6799999999998 99987 7999944421 0 0 1123778889999
Q ss_pred HHHHHHHHHHHHHHhhccchhhhhhccccccCccc--hhh-hccccccccCccccccCCCCcccCCCCcccccccCCCCC
Q 002960 444 AAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD--YLI-KIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPE 520 (862)
Q Consensus 444 aa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~--~l~-~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 520 (862)
++.++...|.+.|..++..- . .+.. .|... ... ....+...+... ...+. .. .+
T Consensus 178 ~la~~~~~fi~~~~~~~~~v--~-~l~~--~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~---------~~-~~ 234 (451)
T PRK09428 178 ELADSMVNFIQQNLLNSPAV--N-RLDQ--PNRPKTKEIKNDIRQFRQRLRDA--------AYQFQ---------GQ-AN 234 (451)
T ss_pred hHHHHHHHHHHHHhhccCcc--c-cccc--cccccchhhHHHHHHHHHHHhhh--------ccCcc---------cc-cC
Confidence 99999999999997654310 0 0000 00000 000 000000000000 00000 00 01
Q ss_pred CeeeEEEeeccCCCCCCCCCCchhhhcccccccccccchhHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcC
Q 002960 521 NWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGAD 600 (862)
Q Consensus 521 ~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~ 600 (862)
...+++......+ . ...+...+..+|.+|++.|+|.|+||+++
T Consensus 235 ~~~~~v~p~~g~g----------------------~--~~~l~~~~~~li~~A~~~i~I~TPYF~p~------------- 277 (451)
T PRK09428 235 NDELSVTPLVGLG----------------------K--KNLLNKTIFHLMASAEQKLTICTPYFNLP------------- 277 (451)
T ss_pred CCCeEEeeeeccC----------------------C--chHHHHHHHHHHhccCcEEEEEeCCcCCC-------------
Confidence 1122333221111 0 24678899999999999999999999964
Q ss_pred CccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCcchhhhhHhHHHHHHHHHHHH-------HHHHHHcCcCCCCCC
Q 002960 601 NLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVV-------AQELREMQVDAHPQD 673 (862)
Q Consensus 601 n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Peg~~~~~~~~~~~~~~~~t~~~~~~~i-------~~~L~~~gv~~~p~~ 673 (862)
..+...+..++++ |++|.||+|..-..+.-.+..+.+..+....+ .|... .+.|.+.|- +
T Consensus 278 ----~~l~~~L~~a~~r--Gv~V~Ii~~~~~andfy~~~d~~~~~~~~~py--~ye~~lr~f~~~~~~li~~G~-l---- 344 (451)
T PRK09428 278 ----AILVRNIIRLLRR--GKKVEIIVGDKTANDFYIPPDEPFKIIGALPY--LYEINLRRFAKRLQYYIDNGQ-L---- 344 (451)
T ss_pred ----HHHHHHHHHHHhc--CCcEEEEcCCcccccCcCCCccHHHHhhhhHH--HHHHhhhhhHHHhhhhhhcCc-c----
Confidence 2455666666554 49999999964221110112222333333222 11111 223444440 0
Q ss_pred cEEEeeCCCcCCCCcccccCCCCcccccccccceeeEEEeEEEEEeeeEEEecCcCccccccCCCCCcceEEEeeCCc
Q 002960 674 YLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPH 751 (862)
Q Consensus 674 yl~~y~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~ 751 (862)
-+++|.. ....+|+|.|+|||++++|||+|+|.||+. .|.|+++.|+||.
T Consensus 345 ~v~i~~~--------------------------~~~~~HaK~i~vD~~~~~iGS~Nld~RS~~--ln~E~~l~i~d~~ 394 (451)
T PRK09428 345 NVRLWKD--------------------------GDNSYHLKGIWVDDRWMLLTGNNLNPRAWR--LDLENALLIHDPK 394 (451)
T ss_pred eEEEEec--------------------------CCCcceEEEEEEeCCEEEEcCCCCChhHhh--hcccceEEEECCh
Confidence 1223311 134799999999999999999999999998 6799999999984
No 12
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=100.00 E-value=2.8e-31 Score=296.92 Aligned_cols=316 Identities=17% Similarity=0.205 Sum_probs=199.9
Q ss_pred chHHHHHHHHHHhcccceEEEEEE--eeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCcccccccc
Q 002960 241 GTCWEDICHAISEAHHLIYIVGWS--VFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVK 318 (862)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~--~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~~ 318 (862)
-..|++++++|++||++|+|..|+ +.++ . .+.++.++|.+||+|||+||||+ |..++
T Consensus 30 ~~~~~~l~~~I~~Ak~~I~i~~yi~~~~~d-----------~--~g~~i~~aL~~aa~rGV~Vril~-D~~~~------- 88 (369)
T PHA03003 30 MSTYECFDEIISQAKKYIYIASFCCNLRST-----------P--EGRLILDKLKEAAESGVKVTILV-DEQSG------- 88 (369)
T ss_pred CCHHHHHHHHHHhhhhEEEEEEEEecccCC-----------c--hHHHHHHHHHHhccCCCeEEEEe-cCCCC-------
Confidence 467999999999999999999998 4443 1 24799999999999999999997 87532
Q ss_pred cCCcccCCcHHHHhhhcCCCceEEecCCCCCCccccccccccccccccccceEEeccCCCCCCcceEEEEccccccCccc
Q 002960 319 TPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRY 398 (862)
Q Consensus 319 ~~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~ 398 (862)
....+.|+..||++....... + +..+.+|.|++|||++ +||+||+||++ +|
T Consensus 89 ---------~~~~~~L~~~Gv~v~~~~~~~---~--------~~~~~~~~k~~IiDg~--------~~y~Gg~Ni~~-~~ 139 (369)
T PHA03003 89 ---------DKDEEELQSSNINYIKVDIGK---L--------NNVGVLLGSFWVSDDR--------RCYIGNASLTG-GS 139 (369)
T ss_pred ---------CccHHHHHHcCCEEEEEeccc---c--------CCCCceeeeEEEEcCc--------EEEEecCccCC-cc
Confidence 124567888899987542110 0 0012358899999998 99999999999 55
Q ss_pred CCCCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEeCHHHHHHHHHHHHHHHhhccchhhhhhccccccCccc
Q 002960 399 DTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD 478 (862)
Q Consensus 399 Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~ 478 (862)
-+..| ....|+|. ||+|.++++.|.+.|..+++.... .
T Consensus 140 ~~~~~-------------------------~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~~~----~-------- 177 (369)
T PHA03003 140 ISTIK-------------------------TLGVYSTY-----PPLATDLRRRFDTFKAFNKNKSVF----N-------- 177 (369)
T ss_pred cCccc-------------------------cceeEecC-----cHHHHHHHHHHHHHHHhcCCCCcc----c--------
Confidence 33222 12578883 999999999999999876443100 0
Q ss_pred hhhhccccccccCccccccCCCCcccCCCCcccccccCCCCCCeeeEEEeeccCCCCCCCCCCchhhhcccccccccccc
Q 002960 479 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVI 558 (862)
Q Consensus 479 ~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 558 (862)
.. ...+ ..|.. .... ...+. ..+++.+ + |.... +. .
T Consensus 178 ---~~-~~~~--------------~~~~~--~~~~--~~~~~--~~~~~~s---~-----P~~~~---------~~---~ 213 (369)
T PHA03003 178 ---RL-CCAC--------------CLPVS--TKYH--INNPI--GGVFFSD---S-----PEHLL---------GY---S 213 (369)
T ss_pred ---cc-cccc--------------CCccc--cccc--ccCCC--cceEEec---C-----ChHHc---------CC---C
Confidence 00 0000 00000 0000 00000 1112222 1 11100 00 0
Q ss_pred hhHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCc
Q 002960 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (862)
Q Consensus 559 e~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Peg~~~~~ 638 (862)
...++++|+++|.+||++|+|+++||++.... +. .-.....+..+|.+++ +.+||+|+|++|.+...++
T Consensus 214 ~~~~~~~ll~~I~~Ak~~I~I~t~yf~P~~~~--d~-----~~~~~~~i~~AL~~AA-a~RGV~VRILv~~~~~~~~--- 282 (369)
T PHA03003 214 RTLDADVVLHKIKSAKKSIDLELLSLVPVIRE--DD-----KTTYWPDIYNALIRAA-INRGVKVRLLVGSWKKNDV--- 282 (369)
T ss_pred CCcCHHHHHHHHHHHhhEEEEEEeccccEEee--CC-----CCccHHHHHHHHHHHH-HcCCCEEEEEEecCCcCCc---
Confidence 13478999999999999999999999854211 00 0001235666665552 1356999999996421110
Q ss_pred chhhhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEeeCCCcCCCCcccccCCCCcccccccccceeeEEEeEEEEE
Q 002960 639 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 718 (862)
Q Consensus 639 ~~~~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIV 718 (862)
. .+ ...+.|.+.|+.. .-.+++|.. ..|+|+|||
T Consensus 283 ~--------~~-------~~~~~L~~~G~~~--~i~vri~~~-----------------------------~~H~K~~VV 316 (369)
T PHA03003 283 Y--------SM-------ASVKSLQALCVGN--DLSVKVFRI-----------------------------PNNTKLLIV 316 (369)
T ss_pred h--------hh-------hHHHHHHHcCCCC--CceEeeecC-----------------------------CCCceEEEE
Confidence 0 11 1356788888531 112333311 169999999
Q ss_pred eeeEEEecCcCccccccCCCCCcceEEEeeCCc
Q 002960 719 DDEYVIMGSANINQRSMAGSKDTEIAMGSYQPH 751 (862)
Q Consensus 719 DD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~ 751 (862)
||++++|||+||+.||+..+ .|+.+.+.++.
T Consensus 317 D~~~a~iGS~N~d~~s~~~~--~e~~~~~~~~~ 347 (369)
T PHA03003 317 DDEFAHITSANFDGTHYLHH--AFVSFNTIDKE 347 (369)
T ss_pred cCCEEEEeccccCchhhccC--CCeEEecCChh
Confidence 99999999999999999855 89888776654
No 13
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.92 E-value=7.5e-25 Score=216.36 Aligned_cols=157 Identities=50% Similarity=0.817 Sum_probs=131.7
Q ss_pred eEeeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe
Q 002960 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (862)
Q Consensus 12 ~~~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~ 91 (862)
.++|||+|+|+|++|++|++||+.+..+++|++++..+..... .++. .+......++||||+|.+++.
T Consensus 2 ~~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~----------~~~~--~~~~~~~g~sDPYv~V~l~~~ 69 (158)
T cd04015 2 AVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTL----------KRPS--SHRHVGKITSDPYATVDLAGA 69 (158)
T ss_pred ceEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhccccc----------cccc--ccccCCCCCcCeEEEEEECCe
Confidence 4689999999999999999999988888999887643311100 0000 000112234899999999988
Q ss_pred EEEeeeeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCCCeeeEEEEEeceeeccCceeEEEEEccCCCCCCCCCCc
Q 002960 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGA 171 (862)
Q Consensus 92 ~~~rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g 171 (862)
+++||++++++.||+|||+|.|+++++...|.|+|||++.+++++||++.+|+.++..|...+.|++|.+..+++.+..+
T Consensus 70 ~~~rT~v~~~~~nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~ 149 (158)
T cd04015 70 RVARTRVIENSENPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGA 149 (158)
T ss_pred EeeEEEEeCCCCCCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCC
Confidence 88999999999999999999999999888999999999999999999999999999989899999999988899888899
Q ss_pred eEEEEeeee
Q 002960 172 SIQLELKFT 180 (862)
Q Consensus 172 ~l~l~l~~~ 180 (862)
+|+|+++|+
T Consensus 150 ~l~v~~~f~ 158 (158)
T cd04015 150 KIRVSLQFT 158 (158)
T ss_pred EEEEEEEEC
Confidence 999999995
No 14
>PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group. Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif.
Probab=99.90 E-value=1.6e-24 Score=178.18 Aligned_cols=73 Identities=60% Similarity=1.183 Sum_probs=71.3
Q ss_pred cccccCCCchHHHHHHHHHHHhhhhhhcccccCCCccceeeCCcccCCCCCccCCCCCCCCCCCCCceecccC
Q 002960 781 DNCFEEPESLDCIRKVNQIAGENWGRFTAMEFTPLQGHLLRYPLQVDADGTVSPLPGYEQFPDAGGKIIGVHS 853 (862)
Q Consensus 781 ~~~~~~p~~~~~~~~~~~~a~~n~~~~~~~~~~~~~g~L~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 853 (862)
++.|.+|+|++|++++|++|++||++|+++++.+|+|||+.||+.|+.||++++|||++.||||+|+|||++|
T Consensus 2 e~~F~~PesleCVr~Vn~iae~nW~~y~~ee~~dl~GHLl~YPv~V~~dG~V~~LpG~e~FPDt~~~VlG~~S 74 (74)
T PF12357_consen 2 EECFLEPESLECVRRVNEIAEENWKQYASEEVTDLPGHLLKYPVQVDRDGKVTPLPGCEFFPDTGGKVLGSKS 74 (74)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHhhccccccCCCccccCCeEEcCCCCEeeCCCCCcCCCCCCcccCCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999986
No 15
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.84 E-value=2e-20 Score=175.81 Aligned_cols=118 Identities=23% Similarity=0.481 Sum_probs=104.5
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEe
Q 002960 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (862)
Q Consensus 16 ~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~r 95 (862)
.|+|.|+|++|+++++.+ .+. +||||+|.+++++. |
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~------------------------------------------sDPYv~i~lg~~~~-k 36 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTR------------------------------------------MDPYCRIRVGHAVY-E 36 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCC------------------------------------------CCceEEEEECCEEE-E
Confidence 489999999999988766 454 99999999999875 9
Q ss_pred eeeccC-CCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEece-eeccCceeEEEEEccCCCCCCCCCCce
Q 002960 96 TRVLKN-SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAH-TIATGELISRWYDIIAPSGSPPKPGAS 172 (862)
Q Consensus 96 T~vi~~-t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~-~l~~g~~~~~w~~l~~~~~~~~~~~g~ 172 (862)
|+|+.+ +.||+|||+|.|.+++....|.|+|||+|.++ |++||.+.+++. .+..|+.++.||+|....+++ ..|+
T Consensus 37 T~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~--~~g~ 114 (121)
T cd04016 37 TPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGED--KEGM 114 (121)
T ss_pred eEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCCC--CceE
Confidence 999877 79999999999999987778999999999998 899999999996 577888899999997666553 5799
Q ss_pred EEEEeee
Q 002960 173 IQLELKF 179 (862)
Q Consensus 173 l~l~l~~ 179 (862)
|+|+|+|
T Consensus 115 i~l~l~y 121 (121)
T cd04016 115 INLVFSY 121 (121)
T ss_pred EEEEEeC
Confidence 9999987
No 16
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.83 E-value=9.2e-20 Score=175.95 Aligned_cols=125 Identities=25% Similarity=0.489 Sum_probs=111.9
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEE
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~ 94 (862)
+-..|.|.|++|++||.+ .+|||+|.+++++++
T Consensus 9 ~~~sL~v~V~EAk~Lp~~-----------------------------------------------~~~Y~~i~Ld~~~va 41 (146)
T cd04013 9 TENSLKLWIIEAKGLPPK-----------------------------------------------KRYYCELCLDKTLYA 41 (146)
T ss_pred EEEEEEEEEEEccCCCCc-----------------------------------------------CCceEEEEECCEEEE
Confidence 458899999999999852 479999999999999
Q ss_pred eeeeccCCCCCceeeEEEEeecCCCceEEEEEEe-cCCC----CCeeeEEEEEeceeeccCceeEEEEEccCCCCCC---
Q 002960 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKD-DDVF----GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSP--- 166 (862)
Q Consensus 95 rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d-~d~~----~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~--- 166 (862)
||+++.++.||.|+|+|.|++.++...++|+|+. .+.. ++++||++.||++.+..|..+++||||++..+++
T Consensus 42 RT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~ 121 (146)
T cd04013 42 RTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSG 121 (146)
T ss_pred EEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccc
Confidence 9999999999999999999999999999999964 3343 4799999999999999999999999999988886
Q ss_pred ----CCCCceEEEEeeeecCCCCC
Q 002960 167 ----PKPGASIQLELKFTPCDKNP 186 (862)
Q Consensus 167 ----~~~~g~l~l~l~~~~~~~~~ 186 (862)
.+..++|+|+++|.++...|
T Consensus 122 ~~~~~~~~~~lrik~rf~~~~~lP 145 (146)
T cd04013 122 GKEGKGESPSIRIKARYQSTRVLP 145 (146)
T ss_pred cccccCCCCEEEEEEEEEEeeeCC
Confidence 67789999999999987655
No 17
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.80 E-value=5.9e-19 Score=166.96 Aligned_cols=114 Identities=25% Similarity=0.383 Sum_probs=102.7
Q ss_pred EEEEEEEeeC---CCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEe
Q 002960 19 LDLKIIRARR---LPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (862)
Q Consensus 19 L~v~I~~A~~---L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~r 95 (862)
|+|+|++|+| |+.+|..+. +||||+|.+++++. |
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~------------------------------------------sDPYv~i~~g~~~~-r 38 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGS------------------------------------------TDAYCVAKYGPKWV-R 38 (126)
T ss_pred eEEEEEEeECCccccccccCCC------------------------------------------CCeeEEEEECCEEe-E
Confidence 8999999999 777776654 99999999988764 9
Q ss_pred eeeccCCCCCceeeEEEEeecCCCceEEEEEEecCCC-------CCeeeEEEEEeceeeccCceeEEEEEccCCCCCCCC
Q 002960 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF-------GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (862)
Q Consensus 96 T~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~-------~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~ 168 (862)
|++++++.||+|||+|.|++.++...|.|+|||.+.+ ++++||++.+++..+..+...+.||+|...++++.+
T Consensus 39 Tk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~ 118 (126)
T cd08379 39 TRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVK 118 (126)
T ss_pred cCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCcc
Confidence 9999999999999999999998888999999999887 699999999999999999999999999877766677
Q ss_pred CCceEEE
Q 002960 169 PGASIQL 175 (862)
Q Consensus 169 ~~g~l~l 175 (862)
..|+|++
T Consensus 119 ~~g~l~~ 125 (126)
T cd08379 119 KMGELEC 125 (126)
T ss_pred CCcEEEe
Confidence 8899875
No 18
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.78 E-value=3.5e-18 Score=161.49 Aligned_cols=120 Identities=26% Similarity=0.391 Sum_probs=107.8
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEeee
Q 002960 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (862)
Q Consensus 18 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT~ 97 (862)
.|.|+|++|++|+.+|..+. +||||++.+.+..+.||+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~~~~~~~~kT~ 38 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGT------------------------------------------SDPYVKFKYGGKTVYKSK 38 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCC------------------------------------------CCCeEEEEECCEEEEEee
Confidence 38999999999998886654 899999999887778999
Q ss_pred eccCCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCCCCCCCCceEEEE
Q 002960 98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLE 176 (862)
Q Consensus 98 vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~l~l~ 176 (862)
+++++.||+|||+|.|.+......+.|+|||.+.++ +++||.+.+++.++..+...+.|++|.+..+. +..|+|+|.
T Consensus 39 ~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~--~~~G~l~l~ 116 (121)
T cd04042 39 TIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSD--EDLGYISLV 116 (121)
T ss_pred eccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCCc--cCceEEEEE
Confidence 999999999999999999887788999999999986 89999999999999988889999999766542 468999999
Q ss_pred eeeec
Q 002960 177 LKFTP 181 (862)
Q Consensus 177 l~~~~ 181 (862)
+.|.|
T Consensus 117 ~~~~~ 121 (121)
T cd04042 117 VTLTP 121 (121)
T ss_pred EEECC
Confidence 99986
No 19
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.78 E-value=1.8e-18 Score=164.67 Aligned_cols=117 Identities=21% Similarity=0.493 Sum_probs=101.5
Q ss_pred EEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEeeee
Q 002960 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (862)
Q Consensus 19 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT~v 98 (862)
+.|+|++|+||+.++..+. +||||+|.+++.+ .||++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~------------------------------------------~dpYv~v~l~~~~-~kT~v 37 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGT------------------------------------------NDAYVIIQLGKEK-YSTSV 37 (126)
T ss_pred CEEEEEECcCCcCCCCCcC------------------------------------------CCceEEEEECCee-eeeee
Confidence 4799999999998876654 8999999998766 59999
Q ss_pred ccCCCCCceeeEEEEeecC------CCceEEEEEEecCCCC-CeeeEEEEEeceeec--cCceeEEEEEccCCCCCCCCC
Q 002960 99 LKNSQEPVWNEHFNIPLAH------PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA--TGELISRWYDIIAPSGSPPKP 169 (862)
Q Consensus 99 i~~t~~P~Wne~f~~~v~~------~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~--~g~~~~~w~~l~~~~~~~~~~ 169 (862)
++++.||+|||+|.|.+.. ....|.|+|||.+.++ +++||++.|++.++. .+.....||+|....+++.+.
T Consensus 38 ~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~ 117 (126)
T cd08682 38 KEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKE 117 (126)
T ss_pred ecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccc
Confidence 9999999999999999876 3567999999999987 899999999999987 577788999997665555557
Q ss_pred CceEEEEee
Q 002960 170 GASIQLELK 178 (862)
Q Consensus 170 ~g~l~l~l~ 178 (862)
.|+|+|+++
T Consensus 118 ~Gei~l~~~ 126 (126)
T cd08682 118 RGEIEVDIQ 126 (126)
T ss_pred cceEEEEeC
Confidence 899999885
No 20
>PRK05443 polyphosphate kinase; Provisional
Probab=99.77 E-value=2.7e-17 Score=194.66 Aligned_cols=273 Identities=16% Similarity=0.187 Sum_probs=186.0
Q ss_pred CcchHHHHHHHHHHhccc-----ceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCccc
Q 002960 239 KPGTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHD 313 (862)
Q Consensus 239 ~~~~~f~~l~~aI~~Ak~-----~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~ 313 (862)
.|-+.|+.+.+.|++|.+ +|.++-|.+..+ .++.++|..||++||+|+||+ +....
T Consensus 345 ~PY~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~----------------s~iv~aL~~Aa~~Gk~V~vlv-e~kar-- 405 (691)
T PRK05443 345 HPYESFDPVVEFLRQAAADPDVLAIKQTLYRTSKD----------------SPIVDALIEAAENGKQVTVLV-ELKAR-- 405 (691)
T ss_pred CCccCchHHHHHHHHhccCCCeeEEEEEEEEecCC----------------HHHHHHHHHHHHcCCEEEEEE-ccCcc--
Confidence 344568899999999998 899999987543 589999999999999999999 54321
Q ss_pred ccccccCCcccCCcHHHHhhhcCCCceEEecCCCCCCccccccccccccccccccceEEeccCCCCCCcceEEEEccccc
Q 002960 314 KLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDL 393 (862)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl 393 (862)
+....+..+.+.|+.+||+|.+. ++ .+..|.|+++||++..+ .-+..+++|+.|+
T Consensus 406 --------fde~~n~~~~~~L~~aGv~V~y~--~~--------------~~k~HaK~~lid~~e~~-~~~~~~~iGTgN~ 460 (691)
T PRK05443 406 --------FDEEANIRWARRLEEAGVHVVYG--VV--------------GLKTHAKLALVVRREGG-GLRRYVHLGTGNY 460 (691)
T ss_pred --------ccHHHHHHHHHHHHHcCCEEEEc--cC--------------CccceeEEEEEEeecCC-ceeEEEEEcCCCC
Confidence 11112335667788999999752 11 12489999999986322 3344899999998
Q ss_pred cCcccCCCCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEeC-HHHHHHHHHHHHHHHhhccchhhhhhcccc
Q 002960 394 CDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG-PAAYDVLINFEQRWRKATKLTELTFKFKRV 472 (862)
Q Consensus 394 ~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~G-paa~dl~~~F~~rW~~~~~~~~~~~~~~~~ 472 (862)
.. ++ ...|.|+.+.... ..+.|+...|...|......
T Consensus 461 n~-~s-------------------------------~~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~---------- 498 (691)
T PRK05443 461 NP-KT-------------------------------ARLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPV---------- 498 (691)
T ss_pred Cc-ch-------------------------------hhhccceeEEEeChHHHHHHHHHHHHHhCcCccc----------
Confidence 88 32 1367899999655 58999999999887532110
Q ss_pred ccCccchhhhccccccccCccccccCCCCcccCCCCcccccccCCCCCCeeeEEEeeccCCCCCCCCCCchhhhcccccc
Q 002960 473 SHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLIC 552 (862)
Q Consensus 473 ~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~ 552 (862)
.+. .++-+ |..
T Consensus 499 ------------------------------------------------~~~-~l~~s---------P~~----------- 509 (691)
T PRK05443 499 ------------------------------------------------KLR-KLLVS---------PFT----------- 509 (691)
T ss_pred ------------------------------------------------ccc-EEeec---------Ccc-----------
Confidence 000 01100 111
Q ss_pred cccccchhHHHHHHHHHHHhccc----eEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEe-
Q 002960 553 AKDVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVII- 627 (862)
Q Consensus 553 ~~~~~~e~sI~~ay~~~I~~A~~----~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivl- 627 (862)
....+.+.+.+.|.+||+ +|+|.+.||.. ..+..+|..|.++| |+|.+++
T Consensus 510 -----~~~~l~~~i~~ei~~Ak~G~~a~I~ik~n~l~d------------------~~ii~aL~~As~~G--V~V~liVR 564 (691)
T PRK05443 510 -----LRERLLELIDREIANARAGKPARIIAKMNSLVD------------------PQIIDALYEASQAG--VKIDLIVR 564 (691)
T ss_pred -----HHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCC------------------HHHHHHHHHHHHCC--CeEEEEEe
Confidence 246788999999999999 99999999652 35666777776555 8888888
Q ss_pred ------cCCCCCCCCCcchhhhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEeeCCCcCCCCcccccCCCCccccc
Q 002960 628 ------PMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDS 701 (862)
Q Consensus 628 ------p~~Peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~l~~~e~~~~~~~~~~~~~~~~~ 701 (862)
|..| |.++...+ + ++...+.++ +++ |.+
T Consensus 565 GiC~l~pgip-g~sd~i~v--------~-------s~v~r~Leh-~rI--------y~f--------------------- 598 (691)
T PRK05443 565 GICCLRPGVP-GLSENIRV--------R-------SIVGRFLEH-SRI--------YYF--------------------- 598 (691)
T ss_pred cccccCCCCC-CCCCCEEE--------H-------HHHHHHHhc-CEE--------EEE---------------------
Confidence 2212 22332222 1 134455442 322 211
Q ss_pred ccccceeeEEEeEEEEEeeeEEEecCcCccccccCCCCCcceEEEeeCCccc
Q 002960 702 QKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (862)
Q Consensus 702 ~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 753 (862)
-.. ||.+++||||||+.|||. ++.|+++.++|+...
T Consensus 599 ---------~~g-----d~~~~~iGSAn~d~Rsl~--~r~Ev~~~i~d~~~~ 634 (691)
T PRK05443 599 ---------GNG-----GDEEVYISSADWMPRNLD--RRVEVLFPILDPRLK 634 (691)
T ss_pred ---------eCC-----CCcEEEEECCCCCccccc--ceEEEeEEEeCHHHH
Confidence 000 899999999999999998 559999999998543
No 21
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.75 E-value=1.2e-17 Score=157.67 Aligned_cols=118 Identities=25% Similarity=0.398 Sum_probs=101.2
Q ss_pred EEEEEEEeeCCCCCCC-CchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEeee
Q 002960 19 LDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (862)
Q Consensus 19 L~v~I~~A~~L~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT~ 97 (862)
|.|+|++|+||+.++. .+. +||||.|.+.+..++||+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~------------------------------------------sDpYv~v~l~~~~~~kT~ 39 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKM------------------------------------------RDCYCTVNLDQEEVFRTK 39 (121)
T ss_pred eEEEEEEccCCCCCCCCCCC------------------------------------------cCcEEEEEECCccEEEee
Confidence 6899999999998642 222 899999999887778999
Q ss_pred eccCCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCCCCCCCCceEEEE
Q 002960 98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLE 176 (862)
Q Consensus 98 vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~l~l~ 176 (862)
++++|.||+|||+|.|.+.+....+.|+|||.+.++ +++||.+.++++++..+...+.||+|... +...+..|+|+++
T Consensus 40 v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~-~~~~~~~G~i~l~ 118 (121)
T cd08401 40 TVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPV-DADSEVQGKVHLE 118 (121)
T ss_pred EEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEcc-CCCCcccEEEEEE
Confidence 999999999999999999877778999999999987 89999999999999888888999999532 2222458999999
Q ss_pred eee
Q 002960 177 LKF 179 (862)
Q Consensus 177 l~~ 179 (862)
++|
T Consensus 119 ~~~ 121 (121)
T cd08401 119 LRL 121 (121)
T ss_pred EEC
Confidence 875
No 22
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.75 E-value=2.3e-17 Score=157.05 Aligned_cols=120 Identities=21% Similarity=0.419 Sum_probs=102.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEe
Q 002960 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (862)
Q Consensus 16 ~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~r 95 (862)
+..|.|+|++|++|+.++ . +||||+|.+++..+.|
T Consensus 3 ~~~L~V~Vi~A~~L~~~~---~------------------------------------------~DPYv~v~l~~~~~~k 37 (126)
T cd08400 3 VRSLQLNVLEAHKLPVKH---V------------------------------------------PHPYCVISLNEVKVAR 37 (126)
T ss_pred eeEEEEEEEEeeCCCCCC---C------------------------------------------CCeeEEEEECCEeEEE
Confidence 357999999999998532 2 8999999998877789
Q ss_pred eeeccCCCCCceeeEEEEeecCCC-ceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCCCCCCCCceE
Q 002960 96 TRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASI 173 (862)
Q Consensus 96 T~vi~~t~~P~Wne~f~~~v~~~~-~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~l 173 (862)
|++. ++.||+|||+|.|.+..+. ..+.|.|+|.+.++ +++||++.+|+..+..+...+.||+|....+++.+..|+|
T Consensus 38 T~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i 116 (126)
T cd08400 38 TKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSL 116 (126)
T ss_pred eecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEE
Confidence 9985 5899999999999976553 56899999998887 8999999999999998888999999976544344568999
Q ss_pred EEEeeeec
Q 002960 174 QLELKFTP 181 (862)
Q Consensus 174 ~l~l~~~~ 181 (862)
+|+++|.+
T Consensus 117 ~l~l~~~~ 124 (126)
T cd08400 117 RIRARYSH 124 (126)
T ss_pred EEEEEEEc
Confidence 99999987
No 23
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.75 E-value=7.6e-17 Score=189.74 Aligned_cols=268 Identities=17% Similarity=0.193 Sum_probs=181.1
Q ss_pred cchHHHHHHHHHHhccc-----ceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCcccc
Q 002960 240 PGTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDK 314 (862)
Q Consensus 240 ~~~~f~~l~~aI~~Ak~-----~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~ 314 (862)
|-+.|+.+.+.|++|.+ +|.|+-|.+..+ .++.++|.+||++|++|+++| +-.....
T Consensus 337 PY~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~----------------s~ii~aL~~Aa~~Gk~V~v~v-eLkArfd- 398 (672)
T TIGR03705 337 PYESFDPVVEFLRQAAEDPDVLAIKQTLYRTSKD----------------SPIIDALIEAAENGKEVTVVV-ELKARFD- 398 (672)
T ss_pred CccCHHHHHHHHHHHhcCCCceEEEEEEEEecCC----------------cHHHHHHHHHHHcCCEEEEEE-Eehhhcc-
Confidence 44568899999999998 899999987643 589999999999999999999 5211000
Q ss_pred cccccCCcccCCcHHHHhhhcCCCceEEecCCCCCCccccccccccccccccccceEEeccCCCCCCcceEEEEcccccc
Q 002960 315 LGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLC 394 (862)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~ 394 (862)
...+-++.+.|+.+|++|.+.- ..+..|.|+++||.+..+ .-+..+++|.-|..
T Consensus 399 ---------e~~ni~wa~~le~aG~~viyg~----------------~~~k~H~K~~li~r~~~~-~~~~y~~igTgN~n 452 (672)
T TIGR03705 399 ---------EEANIRWARRLEEAGVHVVYGV----------------VGLKTHAKLALVVRREGG-ELRRYVHLGTGNYH 452 (672)
T ss_pred ---------chhhHHHHHHHHHcCCEEEEcC----------------CCeeeeeEEEEEEEeeCC-ceEEEEEecCCCCC
Confidence 0113356678899999998521 124689999999976222 12236677766655
Q ss_pred CcccCCCCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeE-EeCHHHHHHHHHHHHHHHhhccchhhhhhccccc
Q 002960 395 DGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCR-LDGPAAYDVLINFEQRWRKATKLTELTFKFKRVS 473 (862)
Q Consensus 395 ~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~-v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~ 473 (862)
.. + -..|+|+++. ..+..+.|+...|..-|.......
T Consensus 453 ~~-------------------------------t-a~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~---------- 490 (672)
T TIGR03705 453 PK-------------------------------T-ARLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPK---------- 490 (672)
T ss_pred Cc-------------------------------c-cccccceeEEEeChHHHHHHHHHHHHhhCCCcchh----------
Confidence 41 1 1468999999 788899999999998875321100
Q ss_pred cCccchhhhccccccccCccccccCCCCcccCCCCcccccccCCCCCCeeeEEEeeccCCCCCCCCCCchhhhccccccc
Q 002960 474 HWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICA 553 (862)
Q Consensus 474 ~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~ 553 (862)
+ .. ++ + + |..
T Consensus 491 -~--~~----------------------------------------------l~-~---~-----P~~------------ 500 (672)
T TIGR03705 491 -F--KH----------------------------------------------LL-V---S-----PFT------------ 500 (672)
T ss_pred -h--HH----------------------------------------------HH-h---C-----cch------------
Confidence 0 00 00 0 0 111
Q ss_pred ccccchhHHHHHHHHHHHhccc----eEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEe--
Q 002960 554 KDVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVII-- 627 (862)
Q Consensus 554 ~~~~~e~sI~~ay~~~I~~A~~----~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivl-- 627 (862)
.+..+.+.+.+.|.+||+ +|+|.+.||.. ..+..+|..|.++| |+|.+++
T Consensus 501 ----~~~~~~~~i~~ei~~Ak~g~~~~I~ik~n~l~D------------------~~ii~aL~~As~aG--V~V~LivRG 556 (672)
T TIGR03705 501 ----LRKRLLELIDREIENARAGKPARIIAKMNSLVD------------------PDLIDALYEASQAG--VKIDLIVRG 556 (672)
T ss_pred ----HHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCC------------------HHHHHHHHHHHHCC--CeEEEEEec
Confidence 146688889999999999 99999999652 35666777776555 8888888
Q ss_pred -----cCCCCCCCCCcchhhhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEeeCCCcCCCCcccccCCCCcccccc
Q 002960 628 -----PMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQ 702 (862)
Q Consensus 628 -----p~~Peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~l~~~e~~~~~~~~~~~~~~~~~~ 702 (862)
|..| |.++...+. ++...+.+
T Consensus 557 iCcL~pgip-g~sd~i~v~---------------siv~r~Le-------------------------------------- 582 (672)
T TIGR03705 557 ICCLRPGVP-GLSENIRVR---------------SIVGRFLE-------------------------------------- 582 (672)
T ss_pred ccccCCCCC-CCCCCEEEE---------------EEhhHhhC--------------------------------------
Confidence 2111 222221110 11222322
Q ss_pred cccceeeEEEeEEEEE---eeeEEEecCcCccccccCCCCCcceEEEeeCCcc
Q 002960 703 KNQRFMIYVHAKGMIV---DDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHH 752 (862)
Q Consensus 703 ~~~~~~iyvHSKlmIV---DD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~ 752 (862)
|+|+++. ||.+++||||||+.|||. +..|+++.++|+..
T Consensus 583 ---------h~rIy~f~~~~d~~~~igSAn~m~Rnl~--~r~E~~~~i~d~~~ 624 (672)
T TIGR03705 583 ---------HSRIYYFGNGGEEKVYISSADWMTRNLD--RRVEVLFPIEDPTL 624 (672)
T ss_pred ---------cCEEEEEeCCCCcEEEEECCCCCCCccc--ceEEEEEEEcCHHH
Confidence 4444444 688999999999999998 66999999999843
No 24
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.74 E-value=2.7e-17 Score=160.99 Aligned_cols=121 Identities=26% Similarity=0.419 Sum_probs=104.0
Q ss_pred EEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEeeee
Q 002960 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (862)
Q Consensus 19 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT~v 98 (862)
|.|+|++|++|+.++..+. +||||+|.++++. .||++
T Consensus 2 L~V~Vi~A~~L~~~d~~g~------------------------------------------sDPYV~v~l~~~~-~kTk~ 38 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRV------------------------------------------PEVFVKAQLGNQV-LRTRP 38 (150)
T ss_pred EEEEEEEeECCCCCCCCCC------------------------------------------CCeEEEEEECCEE-eeeEe
Confidence 8999999999999887765 9999999999855 59999
Q ss_pred ccC-CCCCceeeEEEEeecCCC-ceEEEEEEecCCCC-CeeeEEEEEeceeeccC----ceeEEEEEccCCCC-----CC
Q 002960 99 LKN-SQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG----ELISRWYDIIAPSG-----SP 166 (862)
Q Consensus 99 i~~-t~~P~Wne~f~~~v~~~~-~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g----~~~~~w~~l~~~~~-----~~ 166 (862)
+.+ +.||+|||+|.|.+.++. ..+.|+|+|.+..+ +++||++.||+.++..+ ..+++||+|.+..+ ++
T Consensus 39 ~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~ 118 (150)
T cd04019 39 SQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKK 118 (150)
T ss_pred ccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCccccccc
Confidence 977 699999999999998754 57899999998876 89999999999998643 45789999987765 45
Q ss_pred CCCCceEEEEeeeecC
Q 002960 167 PKPGASIQLELKFTPC 182 (862)
Q Consensus 167 ~~~~g~l~l~l~~~~~ 182 (862)
.+..|+|+|+++|.+.
T Consensus 119 ~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 119 RKFASRIHLRLCLDGG 134 (150)
T ss_pred CcccccEEEEEEecCc
Confidence 5678999999999853
No 25
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.73 E-value=3.8e-17 Score=155.81 Aligned_cols=120 Identities=23% Similarity=0.344 Sum_probs=101.5
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEeee
Q 002960 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (862)
Q Consensus 18 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT~ 97 (862)
.|.|+|++|++|+..+..+. +||||+|.+.+++ .||+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~rT~ 37 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGS------------------------------------------SSAYVELDFDGQK-KRTR 37 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCC------------------------------------------cCcEEEEEECCEE-ecce
Confidence 48999999999998776554 8999999998876 5999
Q ss_pred eccCCCCCceeeEEEEeecCCC----ceEEEEEEecCCC--CCeeeEEEEEeceeec-cCceeEEEEEccCCCCCCCCCC
Q 002960 98 VLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVF--GAQIIGTAAIPAHTIA-TGELISRWYDIIAPSGSPPKPG 170 (862)
Q Consensus 98 vi~~t~~P~Wne~f~~~v~~~~----~~l~~~v~d~d~~--~~~~iG~~~i~l~~l~-~g~~~~~w~~l~~~~~~~~~~~ 170 (862)
+++++.||+|||+|.|.+.++. ..|.|+|||.+.+ ++++||++.+++.++. .+.....||+|... +...+..
T Consensus 38 v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~-~~~~~~~ 116 (127)
T cd04022 38 TKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKR-GLFSRVR 116 (127)
T ss_pred eEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeC-CCCCCcc
Confidence 9999999999999999998653 4689999999887 4899999999999987 57778899999543 3323468
Q ss_pred ceEEEEeeeec
Q 002960 171 ASIQLELKFTP 181 (862)
Q Consensus 171 g~l~l~l~~~~ 181 (862)
|+|+|+++|+.
T Consensus 117 G~l~l~~~~~~ 127 (127)
T cd04022 117 GEIGLKVYITD 127 (127)
T ss_pred EEEEEEEEEcC
Confidence 99999999874
No 26
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.72 E-value=2.9e-17 Score=154.45 Aligned_cols=116 Identities=26% Similarity=0.507 Sum_probs=100.4
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEee
Q 002960 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (862)
Q Consensus 17 g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT 96 (862)
|+|.|+|++|++|++++..+. +||||+|.+++.. .||
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~-~kT 37 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDK------------------------------------------QDPYCVLRIGGVT-KKT 37 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCC------------------------------------------CCceEEEEECCCc-ccc
Confidence 789999999999998886664 8999999998744 699
Q ss_pred eeccC-CCCCceeeEEEEeecCC-CceEEEEEEecCCCCCeeeEEEEEeceeeccCceeEEEEEccCCCCCCCCCCceEE
Q 002960 97 RVLKN-SQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (862)
Q Consensus 97 ~vi~~-t~~P~Wne~f~~~v~~~-~~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~l~ 174 (862)
+++.+ +.||+|||+|.|.+..+ ...+.|+|||.+..++++||++.+++.++..+...+.|++|.. .+ +..|+|+
T Consensus 38 ~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~-~~---~~~G~i~ 113 (118)
T cd08681 38 KTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTL-KG---RYAGEVY 113 (118)
T ss_pred ccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEecc-CC---cEeeEEE
Confidence 98865 79999999999999875 4678999999998889999999999999887777889999953 33 3589999
Q ss_pred EEeee
Q 002960 175 LELKF 179 (862)
Q Consensus 175 l~l~~ 179 (862)
|+++|
T Consensus 114 l~l~f 118 (118)
T cd08681 114 LELTF 118 (118)
T ss_pred EEEEC
Confidence 99987
No 27
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.71 E-value=1.4e-16 Score=151.78 Aligned_cols=104 Identities=20% Similarity=0.344 Sum_probs=90.2
Q ss_pred CCcEEEEEECC-eEEEeeeeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEE
Q 002960 80 SDPYVTVVVPQ-ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWY 157 (862)
Q Consensus 80 ~dpYv~v~l~~-~~~~rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~ 157 (862)
+||||++.++. ....||++++++.||+|||.|.|.+......+.|+|||.+..+ +++||++.+++.++..++....||
T Consensus 18 ~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~ 97 (126)
T cd08678 18 SNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIF 97 (126)
T ss_pred cCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEE
Confidence 89999999974 3446999999999999999999999776778999999999987 899999999999999888888999
Q ss_pred EccCCCCCCCCCCceEEEEeeeecCC
Q 002960 158 DIIAPSGSPPKPGASIQLELKFTPCD 183 (862)
Q Consensus 158 ~l~~~~~~~~~~~g~l~l~l~~~~~~ 183 (862)
+|....++..+..|+|+++++|.+..
T Consensus 98 ~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 98 PLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred EecCCCCCCCCcceEEEEEEEEeccc
Confidence 99654333335699999999998864
No 28
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.71 E-value=8.5e-17 Score=151.96 Aligned_cols=97 Identities=25% Similarity=0.455 Sum_probs=83.8
Q ss_pred CCcEEEEEECCeEEEeeeeccCCCCCceeeEEEEeecCC-CceEEEEEEecCCCCCeeeEEEEEeceeeccC-----cee
Q 002960 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG-----ELI 153 (862)
Q Consensus 80 ~dpYv~v~l~~~~~~rT~vi~~t~~P~Wne~f~~~v~~~-~~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~g-----~~~ 153 (862)
+||||++.+.+. ..||++++++.||+|||+|.|.+.+. ...+.|+|||.+..++++||++.+++.++... ...
T Consensus 17 ~Dpyv~v~l~~~-~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~ 95 (121)
T cd08378 17 NDPVVEVKLGNY-KGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLA 95 (121)
T ss_pred CCCEEEEEECCc-cccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCC
Confidence 899999999875 46999999999999999999998874 56789999999988899999999999998643 235
Q ss_pred EEEEEccCCCCCCCCCCceEEEEeee
Q 002960 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (862)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~l~l~l~~ 179 (862)
..||+|....+ .+..|+|+|+++|
T Consensus 96 ~~W~~L~~~~~--~~~~G~i~l~~~~ 119 (121)
T cd08378 96 PQWYRLEDKKG--GRVGGELMLAVWF 119 (121)
T ss_pred cceEEccCCCC--CccceEEEEEEEe
Confidence 79999966544 3568999999998
No 29
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.71 E-value=1.7e-16 Score=149.34 Aligned_cols=117 Identities=31% Similarity=0.544 Sum_probs=101.9
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEee
Q 002960 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (862)
Q Consensus 17 g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT 96 (862)
|.|+|+|++|++|+.++..+. +||||+|.+.+.. .||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~~T 37 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGK------------------------------------------SDPFCVLELVNAR-LQT 37 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCC------------------------------------------CCcEEEEEECCEe-eec
Confidence 789999999999998876654 8999999998765 599
Q ss_pred eeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCCCCCCCCceEEE
Q 002960 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (862)
Q Consensus 97 ~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~l~l 175 (862)
++++++.||.|||+|.|++.+....+.|+|||.+..+ +++||++.+++.++..+. ..|++|..+.++. +..|+|.+
T Consensus 38 ~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~G~i~l 114 (119)
T cd08377 38 HTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRT-RAKGSILL 114 (119)
T ss_pred ceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECcccCCCC-ceeeEEEE
Confidence 9999999999999999999877788999999999876 899999999999987664 5899997654433 46999999
Q ss_pred Eeee
Q 002960 176 ELKF 179 (862)
Q Consensus 176 ~l~~ 179 (862)
+++|
T Consensus 115 ~~~~ 118 (119)
T cd08377 115 EMDV 118 (119)
T ss_pred EEEe
Confidence 9987
No 30
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.69 E-value=3.6e-16 Score=150.12 Aligned_cols=126 Identities=24% Similarity=0.454 Sum_probs=102.5
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEE
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~ 94 (862)
|-|.|+|+|++|++|+..+..+. + + -++++. .++||||++.+++.++.
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~----~--------~--------~~~~~~------------g~~dpyv~v~~~~~~~~ 49 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTR----H--------A--------VPKKGS------------QLLDPYVSIDVDDTHIG 49 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhh----h--------c--------ccccCc------------cCcCcEEEEEECCEEEe
Confidence 56999999999999998775321 0 0 000000 12899999999988888
Q ss_pred eeeeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeecc--CceeEEEEEccCCCCCCCCCCc
Q 002960 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT--GELISRWYDIIAPSGSPPKPGA 171 (862)
Q Consensus 95 rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~--g~~~~~w~~l~~~~~~~~~~~g 171 (862)
+|++++++.||.|||+|.|++. ....+.|+|+|.+.++ +++||++.+++.++.. +...+.|++|. +.|
T Consensus 50 kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G 120 (132)
T cd04014 50 KTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQG 120 (132)
T ss_pred EEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCc
Confidence 9999999999999999999997 4568999999998877 7999999999999886 56789999992 469
Q ss_pred eEEEEeeeec
Q 002960 172 SIQLELKFTP 181 (862)
Q Consensus 172 ~l~l~l~~~~ 181 (862)
+|+++++|..
T Consensus 121 ~l~l~~~~~~ 130 (132)
T cd04014 121 KLHVKIELKG 130 (132)
T ss_pred EEEEEEEEec
Confidence 9999999875
No 31
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.69 E-value=2.9e-16 Score=148.43 Aligned_cols=117 Identities=25% Similarity=0.511 Sum_probs=100.1
Q ss_pred EEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEeeee
Q 002960 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (862)
Q Consensus 19 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT~v 98 (862)
|.|+|++|++|+.++..+. +||||+|.+++..++||++
T Consensus 2 l~v~vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~kT~v 39 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGS------------------------------------------SDPYCIVKVDNEVIIRTAT 39 (121)
T ss_pred EEEEEEEeeCCcCCCCCCC------------------------------------------CCceEEEEECCEeeeeeee
Confidence 7999999999999887665 8999999998877889999
Q ss_pred ccCCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeeccC-ceeEEEEEccCCCCCCCCCCceEEEE
Q 002960 99 LKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG-ELISRWYDIIAPSGSPPKPGASIQLE 176 (862)
Q Consensus 99 i~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g-~~~~~w~~l~~~~~~~~~~~g~l~l~ 176 (862)
++++.||+|||+|.|++.+....+.|+|||.+.++ +++||++.++++++..+ ...+.|++|....+. .+..|+|+++
T Consensus 40 ~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~-~~~~G~i~l~ 118 (121)
T cd04054 40 VWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPD-EEVQGEIHLE 118 (121)
T ss_pred EcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCC-CccccEEEEE
Confidence 99999999999999999887778999999999987 89999999999888754 347899999543221 1357999988
Q ss_pred ee
Q 002960 177 LK 178 (862)
Q Consensus 177 l~ 178 (862)
++
T Consensus 119 ~~ 120 (121)
T cd04054 119 LS 120 (121)
T ss_pred EE
Confidence 75
No 32
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=2.4e-16 Score=149.38 Aligned_cols=121 Identities=30% Similarity=0.452 Sum_probs=101.0
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-eEEEe
Q 002960 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-ATVAR 95 (862)
Q Consensus 17 g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~-~~~~r 95 (862)
|.|+|+|++|++|+..+..+. .+||||++.+.+ ....|
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~-----------------------------------------~~dpyv~v~~~~~~~~~k 40 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGG-----------------------------------------TVDPYVTFSISNRRELAR 40 (124)
T ss_pred eEEEEEEEcccCCCcccccCC-----------------------------------------CCCCeEEEEECCCCcceE
Confidence 789999999999996553321 189999999988 56789
Q ss_pred eeeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCCCCCCCCceEE
Q 002960 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (862)
Q Consensus 96 T~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~l~ 174 (862)
|++++++.||.|||+|.|.+......+.|+|||.+..+ +++||.+.+++.++..+...+.|...+...++ ..|+|+
T Consensus 41 T~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k---~~G~i~ 117 (124)
T cd04044 41 TKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGK---PVGELN 117 (124)
T ss_pred eeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCCc---cceEEE
Confidence 99999999999999999999866788999999999886 89999999999999877666544433355554 479999
Q ss_pred EEeeeec
Q 002960 175 LELKFTP 181 (862)
Q Consensus 175 l~l~~~~ 181 (862)
++++|.|
T Consensus 118 ~~l~~~p 124 (124)
T cd04044 118 YDLRFFP 124 (124)
T ss_pred EEEEeCC
Confidence 9999987
No 33
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=4.5e-16 Score=149.55 Aligned_cols=120 Identities=21% Similarity=0.390 Sum_probs=100.5
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe------
Q 002960 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA------ 91 (862)
Q Consensus 18 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~------ 91 (862)
.|+|+|++|++|+.++..+. +||||+|.+.+.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~------------------------------------------~Dpyv~v~~~~~~~~~~~ 38 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGA------------------------------------------SDPYVKISLYDPDGNGEI 38 (133)
T ss_pred CEEEEEEEeECCCcccCCCC------------------------------------------cCcEEEEEEECCCCCCcc
Confidence 48999999999998886654 899999999654
Q ss_pred EEEeeeeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeeccCce------eEEEEEccCCCC
Q 002960 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL------ISRWYDIIAPSG 164 (862)
Q Consensus 92 ~~~rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~------~~~w~~l~~~~~ 164 (862)
...+|++++++.||+|||+|.|.+......+.|+|||.+.++ +++||++.+++.++..+.. ...||+|....+
T Consensus 39 ~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~ 118 (133)
T cd04033 39 DSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSS 118 (133)
T ss_pred cceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCC
Confidence 246999999999999999999999876778999999999987 8999999999999886543 468999964322
Q ss_pred CCCCCCceEEEEeeee
Q 002960 165 SPPKPGASIQLELKFT 180 (862)
Q Consensus 165 ~~~~~~g~l~l~l~~~ 180 (862)
..+..|+|+|+++|.
T Consensus 119 -~~~~~G~l~~~~~~~ 133 (133)
T cd04033 119 -KSRVKGHLRLYMAYL 133 (133)
T ss_pred -CCcceeEEEEEEeeC
Confidence 235699999999984
No 34
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.67 E-value=1.1e-15 Score=143.12 Aligned_cols=112 Identities=26% Similarity=0.387 Sum_probs=98.9
Q ss_pred EEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEeeee
Q 002960 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (862)
Q Consensus 19 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT~v 98 (862)
|+|+|++|++|+.++..+. +||||++.+.+.. .||++
T Consensus 2 ~~V~v~~a~~L~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~kT~v 38 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGL------------------------------------------SDPYVKFRLGNEK-YKSKV 38 (116)
T ss_pred EEEEEEEEECCCCCCCCCC------------------------------------------CCcEEEEEECCEe-Eeccc
Confidence 7899999999998876554 8999999998755 69999
Q ss_pred ccCCCCCceeeEEEEeecCC-CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCCCCCCCCceEEEE
Q 002960 99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLE 176 (862)
Q Consensus 99 i~~t~~P~Wne~f~~~v~~~-~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~l~l~ 176 (862)
++++.||.|||+|.|.+... ...+.|+|||.+.++ +++||++.+++.++..+...+.|++|. + ..|+|++.
T Consensus 39 ~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~-~------~~G~~~~~ 111 (116)
T cd08376 39 CSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELE-D------GEGSLLLL 111 (116)
T ss_pred ccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEcc-C------CCcEEEEE
Confidence 99999999999999998876 577899999999987 899999999999999888899999993 2 25999999
Q ss_pred eeee
Q 002960 177 LKFT 180 (862)
Q Consensus 177 l~~~ 180 (862)
+.|+
T Consensus 112 ~~~~ 115 (116)
T cd08376 112 LTLT 115 (116)
T ss_pred EEec
Confidence 8875
No 35
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.67 E-value=7.5e-16 Score=145.32 Aligned_cols=120 Identities=26% Similarity=0.450 Sum_probs=98.7
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEee
Q 002960 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (862)
Q Consensus 17 g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT 96 (862)
|.|+|+|++|++|+.++..... .. ...+||||+|.+++ ...||
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~---~~---------------------------------~g~~dPyv~v~~~~-~~~kT 43 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGG---LV---------------------------------KGKSDPYVIVRVGA-QTFKS 43 (121)
T ss_pred CeEEEEEEEccCCccccccccc---CC---------------------------------CCCcCCEEEEEECC-EeEEc
Confidence 7899999999999987643100 00 00189999999988 55799
Q ss_pred eeccCCCCCceeeEEEEeecC-CCceEEEEEEecCCCCCeeeEEEEEeceeeccCceeEEEEEccCCCCCCCCCCceEEE
Q 002960 97 RVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (862)
Q Consensus 97 ~vi~~t~~P~Wne~f~~~v~~-~~~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~l~l 175 (862)
++++++.||+|||+|.|.+.. ....+.|+|||.+..++++||.+.+++.++..+...+.||+|.+. ..|+|++
T Consensus 44 ~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~ 117 (121)
T cd08391 44 KVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHL 117 (121)
T ss_pred cccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEE
Confidence 999999999999999999875 457899999999888889999999999998877778999999432 4799999
Q ss_pred Eeee
Q 002960 176 ELKF 179 (862)
Q Consensus 176 ~l~~ 179 (862)
+++|
T Consensus 118 ~~~~ 121 (121)
T cd08391 118 KLEW 121 (121)
T ss_pred EEeC
Confidence 9875
No 36
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.67 E-value=6.8e-16 Score=145.43 Aligned_cols=113 Identities=27% Similarity=0.520 Sum_probs=96.8
Q ss_pred EEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--eEEEee
Q 002960 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVART 96 (862)
Q Consensus 19 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~--~~~~rT 96 (862)
|.|+|++|++|+..+..+. +||||++.+.+ ....||
T Consensus 2 L~V~vi~a~~L~~~~~~~~------------------------------------------~Dpyv~v~~~~~~~~~~kT 39 (119)
T cd04036 2 LTVRVLRATNITKGDLLST------------------------------------------PDCYVELWLPTASDEKKRT 39 (119)
T ss_pred eEEEEEEeeCCCccCCCCC------------------------------------------CCcEEEEEEcCCCCccCcc
Confidence 7899999999998776554 89999999953 345799
Q ss_pred eeccCCCCCceeeEEEEeecCCC-ceEEEEEEecCCCCCeeeEEEEEeceeeccCceeEEEEEccCCCCCCCCCCceEEE
Q 002960 97 RVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (862)
Q Consensus 97 ~vi~~t~~P~Wne~f~~~v~~~~-~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~l~l 175 (862)
++++++.||+|||+|.|.+.... ..+.|+|||.+.+++++||++.+++.++..|...+.|++|. +. ..|+|++
T Consensus 40 ~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L~-~~-----~~g~l~~ 113 (119)
T cd04036 40 KTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSLN-PQ-----GKEELEV 113 (119)
T ss_pred ceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEECC-CC-----CCceEEE
Confidence 99999999999999999987653 45899999999888899999999999999999999999993 32 3688888
Q ss_pred Eeee
Q 002960 176 ELKF 179 (862)
Q Consensus 176 ~l~~ 179 (862)
++.+
T Consensus 114 ~~~~ 117 (119)
T cd04036 114 EFLL 117 (119)
T ss_pred EEEe
Confidence 8764
No 37
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.67 E-value=8e-16 Score=146.67 Aligned_cols=120 Identities=22% Similarity=0.421 Sum_probs=100.1
Q ss_pred eEEEEEEEEeeCCCCCCC--CchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEE
Q 002960 17 GDLDLKIIRARRLPNMDM--MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (862)
Q Consensus 17 g~L~v~I~~A~~L~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~ 94 (862)
|.|.|+|++|++|+..+. .+. +||||.|.+++.. .
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~ 37 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGK------------------------------------------SDPYAILSVGAQR-F 37 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCC------------------------------------------cCCeEEEEECCEE-E
Confidence 789999999999998776 443 8999999997765 6
Q ss_pred eeeeccCCCCCceeeEEEEeecC-CCceEEEEEEecCCCC-CeeeEEEEEeceeecc---CceeEEEEEccCCC-CCCCC
Q 002960 95 RTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIAPS-GSPPK 168 (862)
Q Consensus 95 rT~vi~~t~~P~Wne~f~~~v~~-~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~---g~~~~~w~~l~~~~-~~~~~ 168 (862)
||++++++.||+|||+|.|++.. ....+.|+|||.+.++ +++||++.+++.++.. ......||+|.+.. ++...
T Consensus 38 kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~ 117 (128)
T cd04024 38 KTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSV 117 (128)
T ss_pred ecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCcccc
Confidence 99999999999999999999987 4678999999999886 8999999999999872 33468999996542 22234
Q ss_pred CCceEEEEeee
Q 002960 169 PGASIQLELKF 179 (862)
Q Consensus 169 ~~g~l~l~l~~ 179 (862)
..|+|+|++++
T Consensus 118 ~~G~i~l~~~~ 128 (128)
T cd04024 118 VSGEIHLQFSW 128 (128)
T ss_pred ccceEEEEEEC
Confidence 68999998863
No 38
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.66 E-value=9.5e-16 Score=145.30 Aligned_cols=118 Identities=26% Similarity=0.422 Sum_probs=99.1
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEeee
Q 002960 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (862)
Q Consensus 18 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT~ 97 (862)
.|+|+|++|++|+.++..+. +||||+|.+++.. .+|+
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~------------------------------------------~DPyv~v~~~~~~-~kT~ 37 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGT------------------------------------------SDPFVRVFYNGQT-LETS 37 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCC------------------------------------------cCceEEEEECCEE-Eece
Confidence 48999999999998876554 8999999998765 5999
Q ss_pred eccCCCCCceeeEEEEeecCC-CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCCC---CCCCCce
Q 002960 98 VLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS---PPKPGAS 172 (862)
Q Consensus 98 vi~~t~~P~Wne~f~~~v~~~-~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~---~~~~~g~ 172 (862)
+++++.||+|||+|.|.+... ...+.|+|||.+.++ +++||.+.+++.++..+...+.||+|.....+ ..+..|.
T Consensus 38 v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~ 117 (123)
T cd04025 38 VVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGS 117 (123)
T ss_pred eecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEE
Confidence 999999999999999999876 467999999999887 89999999999999877777899999653322 2345788
Q ss_pred EEEEee
Q 002960 173 IQLELK 178 (862)
Q Consensus 173 l~l~l~ 178 (862)
|+|.++
T Consensus 118 l~~~~~ 123 (123)
T cd04025 118 LRLKVR 123 (123)
T ss_pred EEEEeC
Confidence 888763
No 39
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.65 E-value=4.1e-16 Score=149.84 Aligned_cols=97 Identities=29% Similarity=0.576 Sum_probs=89.6
Q ss_pred eeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEE
Q 002960 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (862)
Q Consensus 14 ~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~ 93 (862)
.+.|.|.|.|++|.||...|+.+. +||||.+.+++++.
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~s------------------------------------------SDPyVVl~lg~q~l 40 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGS------------------------------------------SDPYVVLELGNQKL 40 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccC------------------------------------------CCCeEEEEECCeee
Confidence 367999999999999998887654 99999999999986
Q ss_pred EeeeeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeeccCcee
Q 002960 94 ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (862)
Q Consensus 94 ~rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~ 153 (862)
||+++++++||+|||.|+|.+.++...|.++|||+|.++ |++||.|.|++..+......
T Consensus 41 -kT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~ 100 (168)
T KOG1030|consen 41 -KTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQKM 100 (168)
T ss_pred -eeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccccceeeeccHHHHHHhhh
Confidence 999999999999999999999999999999999999999 89999999999998866543
No 40
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.65 E-value=5.4e-16 Score=143.71 Aligned_cols=105 Identities=17% Similarity=0.289 Sum_probs=87.9
Q ss_pred ceeEeeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC
Q 002960 10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (862)
Q Consensus 10 ~~~~~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~ 89 (862)
+.+....|.|+|+|++|++|+ + .+. +||||+|.+.
T Consensus 7 L~Y~~~~~~L~V~vikA~~L~-~--~g~------------------------------------------sDPYVKv~L~ 41 (118)
T cd08677 7 LSYDKQKAELHVNILEAENIS-V--DAG------------------------------------------CECYISGCVS 41 (118)
T ss_pred EEEcCcCCEEEEEEEEecCCC-C--CCC------------------------------------------CCeEEEEEEc
Confidence 444566799999999999998 2 232 8999999994
Q ss_pred C---eEEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEc
Q 002960 90 Q---ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (862)
Q Consensus 90 ~---~~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (862)
. ....+|+|.++|+||+|||+|.|.++.. ...+.|+|||.|.++ +++||++.+++.++..+...+.|.+|
T Consensus 42 ~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 42 VSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 2 2456999999999999999999998875 356899999999998 89999999999988767677788664
No 41
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=2.4e-15 Score=143.39 Aligned_cols=103 Identities=35% Similarity=0.593 Sum_probs=91.7
Q ss_pred CCcEEEEEECCeEEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEE
Q 002960 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR 155 (862)
Q Consensus 80 ~dpYv~v~l~~~~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~ 155 (862)
+||||+|.+.+.+ .||++++++.||+|||+|.|.+.+. ...+.|+|||.+..+ +++||++.+++.++..+.....
T Consensus 15 ~Dpyv~v~~~~~~-~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~ 93 (127)
T cd08373 15 GDRIAKVTFRGVK-KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEV 93 (127)
T ss_pred CCCEEEEEECCEe-eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEE
Confidence 8999999998865 5999999999999999999999764 567899999999887 8999999999999998888899
Q ss_pred EEEccCCCCCCCCCCceEEEEeeeecCCCC
Q 002960 156 WYDIIAPSGSPPKPGASIQLELKFTPCDKN 185 (862)
Q Consensus 156 w~~l~~~~~~~~~~~g~l~l~l~~~~~~~~ 185 (862)
|++|.+..+++ .+|+|+++++|.|...+
T Consensus 94 ~~~L~~~~~~~--~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 94 TEPLLDSNGRP--TGATISLEVSYQPPDGA 121 (127)
T ss_pred EEeCcCCCCCc--ccEEEEEEEEEeCCCCc
Confidence 99998776654 46999999999997654
No 42
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.64 E-value=7.1e-16 Score=145.15 Aligned_cols=105 Identities=18% Similarity=0.346 Sum_probs=89.8
Q ss_pred eEeeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-
Q 002960 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (862)
Q Consensus 12 ~~~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~- 90 (862)
..+-++.|.|+|++|+||+.++ .+. +||||+|.+..
T Consensus 7 ~~~~~~~L~V~Vi~ar~L~~~~-~g~------------------------------------------~dpYVkv~l~p~ 43 (119)
T cd08685 7 IEGQNRKLTLHVLEAKGLRSTN-SGT------------------------------------------CNSYVKISLSPD 43 (119)
T ss_pred EEEcCCEEEEEEEEEECCCCCC-CCC------------------------------------------CCeeEEEEEEeC
Confidence 3457899999999999999877 443 89999999942
Q ss_pred ---eEEEeeeeccCCCCCceeeEEEEeecCCC--ceEEEEEEecCCCC--CeeeEEEEEeceeeccCceeEEEEEc
Q 002960 91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFG--AQIIGTAAIPAHTIATGELISRWYDI 159 (862)
Q Consensus 91 ---~~~~rT~vi~~t~~P~Wne~f~~~v~~~~--~~l~~~v~d~d~~~--~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (862)
....||++++++.||+|||+|.|.+.+.. ..+.|+|||.+..+ +++||.+.||+.++..++.+++||.|
T Consensus 44 ~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 44 KEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 34569999999999999999999987643 56899999988764 68999999999999888889999986
No 43
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.64 E-value=1.3e-15 Score=142.85 Aligned_cols=99 Identities=22% Similarity=0.318 Sum_probs=85.1
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC-----C-e
Q 002960 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP-----Q-A 91 (862)
Q Consensus 18 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~-----~-~ 91 (862)
.|+|+|++|++|+.++. +. +||||+|++- . .
T Consensus 1 kL~V~Vi~A~~L~~~d~-g~------------------------------------------~DPYVkV~l~g~~~~~k~ 37 (120)
T cd08395 1 KVTVKVVAANDLKWQTT-GM------------------------------------------FRPFVEVNLIGPHLSDKK 37 (120)
T ss_pred CEEEEEEECcCCCcccC-CC------------------------------------------CCCEEEEEEecCCCcccc
Confidence 48999999999997763 43 8999999982 2 2
Q ss_pred EEEeeeeccCCCCCceeeEEEEeecCC----CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEc
Q 002960 92 TVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (862)
Q Consensus 92 ~~~rT~vi~~t~~P~Wne~f~~~v~~~----~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (862)
+..||+++.++.||+|||+|.|.+... ...|.|+|+|.+..+ +++||++.+|+.++..++..+.|++|
T Consensus 38 ~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L 110 (120)
T cd08395 38 RKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPL 110 (120)
T ss_pred cEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEEC
Confidence 346899999999999999999999753 245899999999887 89999999999999988889999999
No 44
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.64 E-value=9.3e-16 Score=145.09 Aligned_cols=102 Identities=25% Similarity=0.475 Sum_probs=88.9
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~---- 90 (862)
..|.|.|+|++|++|+.++ .+. +||||+|.+..
T Consensus 11 ~~~~L~V~Vi~A~~L~~~~-~~~------------------------------------------~DpyVkv~l~~~~~~ 47 (122)
T cd08381 11 KNGTLFVMVMHAKNLPLLD-GSD------------------------------------------PDPYVKTYLLPDPQK 47 (122)
T ss_pred eCCEEEEEEEEeeCCCCCC-CCC------------------------------------------CCCEEEEEEeeCCcc
Confidence 4799999999999999888 544 89999999942
Q ss_pred eEEEeeeeccCCCCCceeeEEEEee-cC---CCceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEc
Q 002960 91 ATVARTRVLKNSQEPVWNEHFNIPL-AH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (862)
Q Consensus 91 ~~~~rT~vi~~t~~P~Wne~f~~~v-~~---~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (862)
....||++++++.||+|||+|.|++ .. ....|.|+|||.+.++ +++||++.+++.++..++..+.||+|
T Consensus 48 ~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 48 TTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 3356999999999999999999997 32 2467899999999988 89999999999999988888999997
No 45
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.64 E-value=5.4e-15 Score=140.78 Aligned_cols=122 Identities=17% Similarity=0.237 Sum_probs=101.9
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEe
Q 002960 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (862)
Q Consensus 16 ~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~r 95 (862)
+..|+|+|++|++|+..+..+. +||||++.+++.. .|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~------------------------------------------~dPyv~v~~~~~~-~k 38 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGG------------------------------------------ADPYVIIKCEGES-VR 38 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCC------------------------------------------cCccEEEEECCEE-EE
Confidence 4689999999999998876665 9999999998876 59
Q ss_pred eeeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCCCeeeEEEEEeceeeccCceeEEEEEccCCCC-CCCCCCceEE
Q 002960 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSG-SPPKPGASIQ 174 (862)
Q Consensus 96 T~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~-~~~~~~g~l~ 174 (862)
|++++++.||+|||+|.|.+......|.|+|||++.+++++||.+.+++.++.. ....|++|..... ...+..|+|.
T Consensus 39 T~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~ 116 (126)
T cd04046 39 SPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTIS 116 (126)
T ss_pred eCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCCCCceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEE
Confidence 999999999999999999998888889999999999889999999999987543 3357888853221 2235689999
Q ss_pred EEeeeecC
Q 002960 175 LELKFTPC 182 (862)
Q Consensus 175 l~l~~~~~ 182 (862)
+++.+.+.
T Consensus 117 ~~~~~~~~ 124 (126)
T cd04046 117 VKVTSSDD 124 (126)
T ss_pred EEEEEccc
Confidence 99988763
No 46
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.63 E-value=4.4e-15 Score=143.14 Aligned_cols=114 Identities=24% Similarity=0.390 Sum_probs=96.5
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEee
Q 002960 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (862)
Q Consensus 17 g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT 96 (862)
|.|.|+|++|++|+.+|..+. +||||++.++... .||
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~-~kT 51 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGK------------------------------------------SDPYCEVSMGSQE-HKT 51 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCC------------------------------------------cCcEEEEEECCEe-eec
Confidence 899999999999998886654 9999999998765 699
Q ss_pred eeccCCCCCceeeEEEEeecCCC-ceEEEEEEecCCCC-CeeeEEEEEeceeecc-----CceeEEEEEccCCCCCCCCC
Q 002960 97 RVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT-----GELISRWYDIIAPSGSPPKP 169 (862)
Q Consensus 97 ~vi~~t~~P~Wne~f~~~v~~~~-~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~-----g~~~~~w~~l~~~~~~~~~~ 169 (862)
++++++.||.|||+|.|.+.... ..+.|+|||.+.++ +++||++.+++.++.. ......|+++. + ..
T Consensus 52 ~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~---~---~~ 125 (136)
T cd08375 52 KVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH---E---VP 125 (136)
T ss_pred cccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc---c---cc
Confidence 99999999999999999997654 56899999999887 8999999999998875 23355676662 2 35
Q ss_pred CceEEEEeee
Q 002960 170 GASIQLELKF 179 (862)
Q Consensus 170 ~g~l~l~l~~ 179 (862)
.|+|+|++.|
T Consensus 126 ~g~i~l~~~~ 135 (136)
T cd08375 126 TGEVVVKLDL 135 (136)
T ss_pred ceeEEEEEEe
Confidence 7999999976
No 47
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.63 E-value=1.2e-15 Score=141.80 Aligned_cols=100 Identities=32% Similarity=0.540 Sum_probs=87.5
Q ss_pred EEEEEEEeeCCCCCCC-CchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEeee
Q 002960 19 LDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (862)
Q Consensus 19 L~v~I~~A~~L~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT~ 97 (862)
|.|+|++|++|+.++. .+. +||||++.+++ ...||+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~------------------------------------------~Dpyv~v~~~~-~~~kT~ 37 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDL------------------------------------------TDAFVEVKFGS-TTYKTD 37 (110)
T ss_pred CEEEEEEEECCCccccCCCC------------------------------------------CCceEEEEECC-eeEecc
Confidence 6899999999998874 333 89999999988 557999
Q ss_pred eccCCCCCce-eeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeecc---CceeEEEEEccC
Q 002960 98 VLKNSQEPVW-NEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIA 161 (862)
Q Consensus 98 vi~~t~~P~W-ne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~---g~~~~~w~~l~~ 161 (862)
+++++.||+| ||+|.|.+.+. ...|.|+|||.+.++ +++||++.+++.++.. +..+++||+|++
T Consensus 38 v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 38 VVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred eecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 9999999999 99999999875 367999999999987 7999999999999886 456899999975
No 48
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=99.62 E-value=1.4e-13 Score=148.96 Aligned_cols=338 Identities=16% Similarity=0.184 Sum_probs=186.6
Q ss_pred hHHHHHHHHHHhcccceEEEEEEee---ceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCcccccccc
Q 002960 242 TCWEDICHAISEAHHLIYIVGWSVF---HKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVK 318 (862)
Q Consensus 242 ~~f~~l~~aI~~Ak~~I~I~~w~~~---~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~~ 318 (862)
..+++.++.|++|+++++|..|.++ .++++. .. ....+..+...|.+++.+||.|||.. ..... ..
T Consensus 72 sT~eaW~~Ll~sA~~eldIas~ywsL~~~d~~~~---ds--St~~G~~vy~~L~~~~~~gIsiriA~-~~p~~-~~---- 140 (456)
T KOG3603|consen 72 STKEAWLELLSTAQEELDIASFYWSLTGKDTGVV---DS--STQYGEQVYNTLLALAKSGVKIRIAQ-SYPSG-GP---- 140 (456)
T ss_pred cHHHHHHHHhhccceEEEEEEEeeccccceeccC---CC--cchHHHHHHHHHHHhccCCeEEEEEe-ecCCC-CC----
Confidence 3468899999999999999876543 222111 10 11123688899999999999999987 43311 10
Q ss_pred cCCcccCCcHHHHhhhcCCC-ceEEec--CCCCCCccccccccccccccccccceEEeccCCCCCCcceEEEEccccccC
Q 002960 319 TPGVMATHDEETKKFFKHSS-VNCVLA--PRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCD 395 (862)
Q Consensus 319 ~~~~~~~~~~~~~~~l~~~~-v~v~~~--~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~ 395 (862)
+..-...|...| ++++-- ++++. -.-.|-|++|||++ .-|+||.|+.+
T Consensus 141 --------~~~d~~~Le~~Gaa~vr~id~~~l~g-------------~GvlHtKf~vvD~k--------hfylGSaNfDW 191 (456)
T KOG3603|consen 141 --------PNADLQVLESLGLAQVRSIDMNRLTG-------------GGVLHTKFWVVDIK--------HFYLGSANFDW 191 (456)
T ss_pred --------CcccHHHHHhCCCceEEeeccccccc-------------CceEEEEEEEEecc--------eEEEeccccch
Confidence 111233455566 555421 22221 12479999999998 99999999999
Q ss_pred cccCCCCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEeC--HHHHHHHHHHHHHHHhhccchhhhhhccccc
Q 002960 396 GRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG--PAAYDVLINFEQRWRKATKLTELTFKFKRVS 473 (862)
Q Consensus 396 ~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~G--paa~dl~~~F~~rW~~~~~~~~~~~~~~~~~ 473 (862)
|--|+- ..+++.++- ..|.|+.+.|.++|....... -..+
T Consensus 192 -rSlTqv-------------------------------kElGv~v~NCpclakDL~kiFe~yW~lg~~~s------~~p~ 233 (456)
T KOG3603|consen 192 -RSLTQV-------------------------------KELGVVVRNCPCLAKDLKKIFERYWYLGNAKS------LIPK 233 (456)
T ss_pred -hhccce-------------------------------eEeeeEEecChhHHHHHHHHHHHHhcCCCCCc------cCCC
Confidence 544321 234455544 479999999999998643321 0011
Q ss_pred cCccchhhhccccccccCccccccCCCCcccCCCCcccccccCCCCCCeeeEEEeeccCCCCCCCCCCchhhhccccccc
Q 002960 474 HWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICA 553 (862)
Q Consensus 474 ~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~ 553 (862)
.|....-. +...+.+.....+ ......++..| |+ .. +.
T Consensus 234 ~wp~~~st-----------------------~~N~~~p~~~~~d-g~~~~~y~saS---------P~---~~------~~ 271 (456)
T KOG3603|consen 234 KWPNCYST-----------------------HYNKPLPMKIAVD-GTPATPYISAS---------PP---PL------NP 271 (456)
T ss_pred CCcccccc-----------------------cccccCcceeecC-CCCcceEEccC---------CC---CC------CC
Confidence 22211100 0000000000000 01122333222 11 11 11
Q ss_pred ccccchhHHHHHHHHHHHhccceEEEe-ecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCC
Q 002960 554 KDVVIDKSIQTAYIQAIRSAQHFIYIE-NQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPE 632 (862)
Q Consensus 554 ~~~~~e~sI~~ay~~~I~~A~~~IyIe-nqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Pe 632 (862)
.+ ..--.+|+++.|..|++||||. .+||-+..+. +. +. -.+|-.+|-+|+- +||+|++++..|++
T Consensus 272 ~g---rt~DL~ail~~i~~A~~fv~isVMdY~Ps~~y~----k~----~~-fw~iDdaiR~aa~--RgV~vR~lvs~~~~ 337 (456)
T KOG3603|consen 272 SG---RTWDLEAILNTIDEAQKFVYISVMDYFPSTIYS----KN----HR-FWEIDDAIRRAAV--RGVKVRLLVSCWKH 337 (456)
T ss_pred CC---CchhHHHHHHHHHHHhhheeeeehhccchheee----cC----cc-hhhhhHHHHHHhh--cceEEEEEEeccCC
Confidence 11 2334689999999999999996 5566443221 11 00 1134344444433 66999999999876
Q ss_pred CCCCCcchhhhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEeeCCCcCCCCcccccCCCCcccccccccceeeEEE
Q 002960 633 GDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVH 712 (862)
Q Consensus 633 g~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~iyvH 712 (862)
.++. +..+|+ ++ ..|...+....+ -++||-.-.... ..-+ ..-..|
T Consensus 338 ~~~~---m~~~L~----SL----q~l~~~~~~~~i------qvk~f~VP~~~~--------~~ip---------~~Rv~H 383 (456)
T KOG3603|consen 338 SEPS---MFRFLR----SL----QDLSDPLENGSI------QVKFFIVPQTNI--------EKIP---------FARVNH 383 (456)
T ss_pred CCch---HHHHHH----HH----HHhcCccccCce------EEEEEEeCCCcc--------ccCc---------hhhhcc
Confidence 5432 111111 11 011111211122 245664311100 0000 123679
Q ss_pred eEEEEEeeeEEEecCcCccccccCCCCCcceEEEeeCC
Q 002960 713 AKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQP 750 (862)
Q Consensus 713 SKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~ 750 (862)
+|+||-++ .++||++||..--+..+ .-+++++.++
T Consensus 384 nKymVTe~-aayIGTSNws~dYf~~T--aG~~ivv~q~ 418 (456)
T KOG3603|consen 384 NKYMVTES-AAYIGTSNWSGDYFTST--AGTAIVVRQT 418 (456)
T ss_pred ceeEEeec-ceeeeccCCCccceecc--CceEEEEecC
Confidence 99999988 89999999988888766 7788888765
No 49
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.62 E-value=4.2e-15 Score=144.06 Aligned_cols=107 Identities=21% Similarity=0.408 Sum_probs=90.2
Q ss_pred eeceEEEEEEEEeeCCCCCC-CCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEE--CC
Q 002960 14 YLHGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV--PQ 90 (862)
Q Consensus 14 ~l~g~L~v~I~~A~~L~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l--~~ 90 (862)
+-.|.|.|+|++|+||+.++ ..+. +||||++++ ++
T Consensus 26 y~~~~L~V~Vi~ArnL~~~~~~~g~------------------------------------------sDPYVKv~Llp~~ 63 (146)
T cd04028 26 DKKGQLEVEVIRARGLVQKPGSKVL------------------------------------------PAPYVKVYLLEGK 63 (146)
T ss_pred eCCCEEEEEEEEeeCCCcccCCCCC------------------------------------------cCCeEEEEEECCC
Confidence 45789999999999998764 3333 899999999 22
Q ss_pred e--EEEeeeeccCCCCCceeeEEEEeecCCCceEEEEEE-ecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCC
Q 002960 91 A--TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK-DDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (862)
Q Consensus 91 ~--~~~rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~-d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~ 162 (862)
. ...||++++++.||+|||+|.|.+......|.|+|| |.+.++ +++||.+.|+|.++..+.....||+|+..
T Consensus 64 ~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 64 KCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred ccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 2 356999999999999999999999866678999999 567666 79999999999999878888999999644
No 50
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.62 E-value=3.6e-15 Score=141.55 Aligned_cols=103 Identities=33% Similarity=0.546 Sum_probs=90.6
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--CeE
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~--~~~ 92 (862)
-.|+|.|+|++|++|+.++..+. +||||+|.+. ...
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~l~~~~~~ 51 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGT------------------------------------------SDPYVKVYLLPDKKK 51 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence 45899999999999998876554 8999999984 235
Q ss_pred EEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEc
Q 002960 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (862)
Q Consensus 93 ~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (862)
+.||++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||++.+++.++..+...+.|++|
T Consensus 52 ~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 52 KFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred ceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 67999999999999999999998763 357999999999887 89999999999999888889999998
No 51
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.61 E-value=3e-15 Score=142.09 Aligned_cols=104 Identities=26% Similarity=0.471 Sum_probs=91.7
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEE--CCeE
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV--PQAT 92 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l--~~~~ 92 (862)
..|.|.|+|++|++|+.++..+. +||||+|.+ .+..
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~ 51 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGT------------------------------------------ADPYCKVRLLPDRSN 51 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCCeEEEEEecCCCC
Confidence 35899999999999998886654 899999999 4355
Q ss_pred EEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEcc
Q 002960 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (862)
Q Consensus 93 ~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~ 160 (862)
+.||++++++.||+|||+|.|.+... ...+.|+|||.+.++ +++||.+.+++.++..++..+.|++|.
T Consensus 52 ~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 52 TKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred cEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 68999999999999999999998765 357999999999887 899999999999998788889999983
No 52
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.61 E-value=4.5e-15 Score=136.62 Aligned_cols=97 Identities=26% Similarity=0.501 Sum_probs=85.3
Q ss_pred EEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEeeee
Q 002960 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (862)
Q Consensus 19 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT~v 98 (862)
|.|+|++|++|+..+..+. +||||+|.+++. ..||++
T Consensus 2 L~V~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~-~~kT~v 38 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKE------------------------------------------PSPYVELTVGKT-TQKSKV 38 (105)
T ss_pred EEEEEeeecCCCCcccCCC------------------------------------------CCcEEEEEECCE-EEeCcc
Confidence 7899999999998765443 899999999985 469999
Q ss_pred ccCCCCCceeeEEEEeecCC-CceEEEEEEecCCCCCeeeEEEEEeceeeccCc--eeEEEEEcc
Q 002960 99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGE--LISRWYDII 160 (862)
Q Consensus 99 i~~t~~P~Wne~f~~~v~~~-~~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~g~--~~~~w~~l~ 160 (862)
++++.||+|||+|.|.+.++ ...+.|+|+|.+. +++||++.+++.++..++ ..+.||+|.
T Consensus 39 ~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 39 KERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred ccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEEEEEHHHhhccccceeeeeEecC
Confidence 99999999999999999985 5678999999887 889999999999987543 689999994
No 53
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.60 E-value=4e-15 Score=141.45 Aligned_cols=103 Identities=22% Similarity=0.396 Sum_probs=88.2
Q ss_pred eceEEEEEEEEeeCCCCCCCC-chhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--C-
Q 002960 15 LHGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q- 90 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~--~- 90 (862)
..+.|.|+|++|+||+.++.. +. +||||+|.+. .
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~------------------------------------------~dpyVkv~l~p~~~ 50 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQR------------------------------------------SDPYVKTYLLPDKS 50 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCC------------------------------------------CCcEEEEEEEcCCC
Confidence 446899999999999988754 33 8999999993 1
Q ss_pred -eEEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEc
Q 002960 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (862)
Q Consensus 91 -~~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (862)
....||++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||++.|++.++..+.....||+|
T Consensus 51 ~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 51 NRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred ccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 2346999999999999999999998753 357899999999887 89999999999999877778899997
No 54
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.60 E-value=1.6e-14 Score=137.51 Aligned_cols=114 Identities=24% Similarity=0.394 Sum_probs=95.8
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--eEEEe
Q 002960 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVAR 95 (862)
Q Consensus 18 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~--~~~~r 95 (862)
.|.|+|++|++|+.++..+. +||||+|.+.+ ...+|
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~------------------------------------------~Dpyv~v~~~~~~~~~~k 39 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGL------------------------------------------SDPYVTLVDTNGKRRIAK 39 (126)
T ss_pred EEEEEEEEeECCCCCCCCCC------------------------------------------CCceEEEEECCCCeeeec
Confidence 58999999999998776554 89999999864 35679
Q ss_pred eeeccCCCCCceeeEEEEeecCC-CceEEEEEEecCCCC-CeeeEEEEEeceeecc---CceeEEEEEccCCCCCCCCCC
Q 002960 96 TRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIAPSGSPPKPG 170 (862)
Q Consensus 96 T~vi~~t~~P~Wne~f~~~v~~~-~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~---g~~~~~w~~l~~~~~~~~~~~ 170 (862)
|++++++.||+|||+|.|++.+. ...|.|+|||.+.++ +++||++.+++..+.. +...+.|++|. +.
T Consensus 40 T~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~--------~~ 111 (126)
T cd04043 40 TRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD--------TQ 111 (126)
T ss_pred ccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC--------CC
Confidence 99999999999999999999885 567899999999886 8999999999987543 44678999993 25
Q ss_pred ceEEEEeeeec
Q 002960 171 ASIQLELKFTP 181 (862)
Q Consensus 171 g~l~l~l~~~~ 181 (862)
|+|++.+.+.-
T Consensus 112 g~i~l~~~~~~ 122 (126)
T cd04043 112 GRLLLRVSMEG 122 (126)
T ss_pred CeEEEEEEEee
Confidence 88988888754
No 55
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.60 E-value=8.3e-15 Score=137.16 Aligned_cols=97 Identities=21% Similarity=0.333 Sum_probs=85.4
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEee
Q 002960 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (862)
Q Consensus 17 g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT 96 (862)
+.|+|+|++|++|+.++ . .||||.|.+++.+ .+|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~------------------------------------------~dPYV~Ik~g~~k-~kT 35 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---K------------------------------------------FNTYVTLKVQNVK-STT 35 (127)
T ss_pred ceEEEEEEEeeCCCCCC---C------------------------------------------CCCeEEEEECCEE-eEe
Confidence 68999999999997533 1 6899999998866 599
Q ss_pred eeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCCCeeeEEEEEeceeeccCcee--EEEEEcc
Q 002960 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELI--SRWYDII 160 (862)
Q Consensus 97 ~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~g~~~--~~w~~l~ 160 (862)
+++++ .||.|||.|.|.+......|.|+|||++.++|++||++.|||.++..+... ..||+|.
T Consensus 36 ~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 36 IAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred eECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence 99988 499999999999998888899999999988899999999999998866544 7899994
No 56
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.60 E-value=7e-15 Score=138.69 Aligned_cols=104 Identities=27% Similarity=0.457 Sum_probs=93.8
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEee
Q 002960 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (862)
Q Consensus 17 g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT 96 (862)
|.|.|+|++|++|+..+..+. +||||+|.+++..+.+|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~kT 38 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGK------------------------------------------IDPYVRVLVNGIVKGRT 38 (120)
T ss_pred CeEEEEEEeeECCCCccCCCC------------------------------------------cCCEEEEEECCEEeece
Confidence 789999999999998776554 89999999988777899
Q ss_pred eeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCC
Q 002960 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (862)
Q Consensus 97 ~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~ 163 (862)
++++++.||+|||+|.|++.+....+.|+|||.+.++ +++||++.+++.++..+ ..+.||.+++.+
T Consensus 39 ~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 39 VTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred eEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 9999999999999999999988889999999999988 78999999999999866 668999998764
No 57
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.59 E-value=1.6e-14 Score=139.17 Aligned_cols=118 Identities=19% Similarity=0.356 Sum_probs=96.5
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEeee
Q 002960 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (862)
Q Consensus 18 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT~ 97 (862)
.|+|.|++|++|+.+|..+. +||||+|.+.+.. .||+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~kT~ 38 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGL------------------------------------------SDPFARVSFLNQS-QETE 38 (135)
T ss_pred EEEEEEEEeecCcCCCCCCC------------------------------------------CCCEEEEEECCee-eEee
Confidence 48999999999998887665 9999999998765 5999
Q ss_pred eccCCCCCceeeEEEEeecCC----------CceEEEEEEecCCCC-CeeeEEEEE-eceeecc---CceeEEEEEccCC
Q 002960 98 VLKNSQEPVWNEHFNIPLAHP----------LSNLEIQVKDDDVFG-AQIIGTAAI-PAHTIAT---GELISRWYDIIAP 162 (862)
Q Consensus 98 vi~~t~~P~Wne~f~~~v~~~----------~~~l~~~v~d~d~~~-~~~iG~~~i-~l~~l~~---g~~~~~w~~l~~~ 162 (862)
+++++.||+|||+|.|.+... ...+.|+|||.+.++ +++||++.+ |+..+.. +.....|++|. .
T Consensus 39 v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~-~ 117 (135)
T cd04017 39 VIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY-K 117 (135)
T ss_pred eEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEee-c
Confidence 999999999999999985321 246899999999987 799999997 5544442 45678999994 3
Q ss_pred CCCCCCCCceEEEEeeeecC
Q 002960 163 SGSPPKPGASIQLELKFTPC 182 (862)
Q Consensus 163 ~~~~~~~~g~l~l~l~~~~~ 182 (862)
.+ ...|+|+|++.+.++
T Consensus 118 ~~---~~~Geil~~~~~~~~ 134 (135)
T cd04017 118 GG---QSAGELLAAFELIEV 134 (135)
T ss_pred CC---CchhheeEEeEEEEe
Confidence 33 358999999999875
No 58
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.59 E-value=1e-14 Score=138.19 Aligned_cols=116 Identities=25% Similarity=0.376 Sum_probs=94.6
Q ss_pred EEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEeeee
Q 002960 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (862)
Q Consensus 19 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT~v 98 (862)
|+|+|++|++|+.++..+. +||||++.+++..+.||++
T Consensus 2 l~v~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~kT~v 39 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRL------------------------------------------PDPFAVITVDGGQTHSTDV 39 (123)
T ss_pred eEEEEEEecCCCccCCCCC------------------------------------------CCcEEEEEECCccceEccE
Confidence 7899999999998876654 8999999997666689999
Q ss_pred ccCCCCCceeeEEEEeecCCCceEEEEEEecCCCC---CeeeEEEEEeceeeccCc-eeEEEEEccCCCCC-CCCCCceE
Q 002960 99 LKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGE-LISRWYDIIAPSGS-PPKPGASI 173 (862)
Q Consensus 99 i~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~---~~~iG~~~i~l~~l~~g~-~~~~w~~l~~~~~~-~~~~~g~l 173 (862)
++++.||+|||+|.|++.. ...|.|+|||.+.++ +++||++.+++.++.... ....|++|...... .....|+|
T Consensus 40 ~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v 118 (123)
T cd08382 40 AKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKI 118 (123)
T ss_pred EcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEE
Confidence 9999999999999999976 678999999999886 479999999999987433 34679999544322 12236788
Q ss_pred EEEe
Q 002960 174 QLEL 177 (862)
Q Consensus 174 ~l~l 177 (862)
.+++
T Consensus 119 ~~~~ 122 (123)
T cd08382 119 VVSL 122 (123)
T ss_pred EEEe
Confidence 7765
No 59
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.59 E-value=4.9e-15 Score=140.79 Aligned_cols=113 Identities=25% Similarity=0.428 Sum_probs=95.7
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEeee
Q 002960 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (862)
Q Consensus 18 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT~ 97 (862)
+|+|+|++|++|+..+..+. +||||+|.+++....+|+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~------------------------------------------~dpYv~v~~~~~~~~~T~ 38 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGK------------------------------------------MKVYAVVWIDPSHKQSTP 38 (125)
T ss_pred CEEEEEEEcccCCCCCcccC------------------------------------------CceEEEEEECCCcccccc
Confidence 58999999999998775544 899999999884456999
Q ss_pred ecc-CCCCCceeeEEEEeecCC-----CceEEEEEEecCCCC-CeeeEEEEEeceeeccCce-----eEEEEEccCCCCC
Q 002960 98 VLK-NSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-----ISRWYDIIAPSGS 165 (862)
Q Consensus 98 vi~-~t~~P~Wne~f~~~v~~~-----~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~-----~~~w~~l~~~~~~ 165 (862)
++. ++.||+|||+|.|.+.++ ...|.|+|||.+.++ +++||.+.+++.++..+.. ...||+|..++|+
T Consensus 39 ~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~ 118 (125)
T cd04051 39 VDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGK 118 (125)
T ss_pred cccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCC
Confidence 986 489999999999999887 578999999999866 8999999999999886554 3789999888775
Q ss_pred CCCCCceEEE
Q 002960 166 PPKPGASIQL 175 (862)
Q Consensus 166 ~~~~~g~l~l 175 (862)
..|.|+|
T Consensus 119 ---~~G~~~~ 125 (125)
T cd04051 119 ---PQGVLNF 125 (125)
T ss_pred ---cCeEEeC
Confidence 4788874
No 60
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.58 E-value=7.7e-15 Score=139.44 Aligned_cols=104 Identities=23% Similarity=0.425 Sum_probs=88.8
Q ss_pred eeceEEEEEEEEeeCCCCCCCC-chhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--C
Q 002960 14 YLHGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q 90 (862)
Q Consensus 14 ~l~g~L~v~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~--~ 90 (862)
-.-|.|.|+|++|+||+.++.. +. +||||+|.+. +
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~~~~~------------------------------------------~DpyVkv~l~p~~ 49 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDEAKKR------------------------------------------SNPYVKTYLLPDK 49 (125)
T ss_pred CCCCeEEEEEEEecCCCccCCCCCC------------------------------------------CCcEEEEEEEcCC
Confidence 3568899999999999876642 22 8999999983 1
Q ss_pred --eEEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEc
Q 002960 91 --ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (862)
Q Consensus 91 --~~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (862)
....||++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||++.|++..+...+..+.|+||
T Consensus 50 ~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 50 SRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred ccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 2356999999999999999999998763 456999999999888 89999999999999888889999998
No 61
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.58 E-value=5.8e-15 Score=144.15 Aligned_cols=113 Identities=32% Similarity=0.392 Sum_probs=84.0
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEeee
Q 002960 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (862)
Q Consensus 18 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT~ 97 (862)
.|+|+|++|++|+.||..+. .+++.. .+ +.....+||||+|.+++.++ ||+
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~--~~~~~~--~~------------------------~~~~~~~DPYV~V~~~g~~~-kT~ 51 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIM--ANVKKA--FL------------------------GEKKELVDPYVEVSFAGQKV-KTS 51 (151)
T ss_pred CeEEEEEEeCCCCccChhhh--ccceec--cc------------------------cCCCCCcCcEEEEEECCEee-ecc
Confidence 47999999999999985442 000000 00 00011289999999998775 999
Q ss_pred eccCCCCCceeeEEEEeecC--CCceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEcc
Q 002960 98 VLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (862)
Q Consensus 98 vi~~t~~P~Wne~f~~~v~~--~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~ 160 (862)
+++++.||+|||+|.|++.. ....|.|+|||.|..+ +++||++.+++.++... ..++|+|++
T Consensus 52 v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~-~~~~~lp~~ 116 (151)
T cd04018 52 VKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNS-GDEGFLPTF 116 (151)
T ss_pred eEcCCCCCCcceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccC-CccccCCcc
Confidence 99999999999999999654 3568999999999986 89999999999988753 344444443
No 62
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.58 E-value=7.2e-15 Score=140.05 Aligned_cols=109 Identities=21% Similarity=0.313 Sum_probs=89.9
Q ss_pred CceeEeeceEEEEEEEEeeCCCCCCCC-chhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEE
Q 002960 9 KEKVIYLHGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVV 87 (862)
Q Consensus 9 ~~~~~~l~g~L~v~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~ 87 (862)
++.+....+.|.|+|++|+||+.++.. +. +||||++.
T Consensus 7 sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~------------------------------------------~dpYVkv~ 44 (128)
T cd08392 7 ALHYNFRTSCLEITIKACRNLAYGDEKKKK------------------------------------------CHPYVKVC 44 (128)
T ss_pred EEEEeCCCCEEEEEEEecCCCCccCCCCCC------------------------------------------CCeEEEEE
Confidence 344444568999999999999987753 43 89999999
Q ss_pred ECC----eEEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeecc---CceeEEE
Q 002960 88 VPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRW 156 (862)
Q Consensus 88 l~~----~~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~---g~~~~~w 156 (862)
+-. ....||++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||++.|++.++.. ++.+..|
T Consensus 45 llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W 124 (128)
T cd08392 45 LLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLW 124 (128)
T ss_pred EEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccce
Confidence 832 2356999999999999999999998764 457899999999887 8999999999998864 3467899
Q ss_pred EEc
Q 002960 157 YDI 159 (862)
Q Consensus 157 ~~l 159 (862)
|+|
T Consensus 125 ~~l 127 (128)
T cd08392 125 YPL 127 (128)
T ss_pred EEC
Confidence 997
No 63
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.58 E-value=2.7e-14 Score=139.48 Aligned_cols=98 Identities=19% Similarity=0.392 Sum_probs=82.7
Q ss_pred CCcEEEEEE----CCeEEEeeeeccCCCCCceeeEEEEeecCC---------CceEEEEEEecCCC-C-CeeeEEEEEec
Q 002960 80 SDPYVTVVV----PQATVARTRVLKNSQEPVWNEHFNIPLAHP---------LSNLEIQVKDDDVF-G-AQIIGTAAIPA 144 (862)
Q Consensus 80 ~dpYv~v~l----~~~~~~rT~vi~~t~~P~Wne~f~~~v~~~---------~~~l~~~v~d~d~~-~-~~~iG~~~i~l 144 (862)
+||||++++ .+....||+|+++|.||+|||+|.|.+... ...+.|+|||.+.+ + |++||++.+++
T Consensus 25 ~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L 104 (155)
T cd08690 25 LDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKL 104 (155)
T ss_pred CCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEc
Confidence 899999997 334567999999999999999999998655 34699999999886 3 89999999999
Q ss_pred eeeccCceeEEEEEccCCCCCCCCCCceEEEEeeee
Q 002960 145 HTIATGELISRWYDIIAPSGSPPKPGASIQLELKFT 180 (862)
Q Consensus 145 ~~l~~g~~~~~w~~l~~~~~~~~~~~g~l~l~l~~~ 180 (862)
+.+.....+..|++|++. .+ ..+|+|+++++.-
T Consensus 105 ~~l~~~~~~~~~~~L~~~-~k--~~Gg~l~v~ir~r 137 (155)
T cd08690 105 EPLETKCEIHESVDLMDG-RK--ATGGKLEVKVRLR 137 (155)
T ss_pred ccccccCcceEEEEhhhC-CC--CcCCEEEEEEEec
Confidence 999877778889999743 33 3699999999853
No 64
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.58 E-value=2e-14 Score=137.12 Aligned_cols=114 Identities=25% Similarity=0.505 Sum_probs=95.1
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEeee
Q 002960 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (862)
Q Consensus 18 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT~ 97 (862)
.|.|+|++|++|+.+|..+. +||||+|.+++. ..||+
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyv~v~~~~~-~~kT~ 38 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGT------------------------------------------SDPYVTVQVGKT-KKRTK 38 (127)
T ss_pred eEEEEEEECcCCcCCCCCCC------------------------------------------cCcEEEEEECCE-eeecc
Confidence 68999999999998886654 899999999765 46999
Q ss_pred eccCCCCCceeeEEEEeecCCCceEEEEEEecCCC------------CCeeeEEEEEeceeeccCceeEEEEEccCCCCC
Q 002960 98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF------------GAQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (862)
Q Consensus 98 vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~------------~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~ 165 (862)
+++++.||+|||+|.|.+..+...+.|+|||.|.. .+++||.+.+++.++... .+.|++|...+ .
T Consensus 39 ~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~-~ 115 (127)
T cd04027 39 TIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRT-D 115 (127)
T ss_pred eecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHccCC--CCeEEECccCC-C
Confidence 99999999999999999987777899999998852 389999999999987533 46899996444 3
Q ss_pred CCCCCceEEEEe
Q 002960 166 PPKPGASIQLEL 177 (862)
Q Consensus 166 ~~~~~g~l~l~l 177 (862)
..+..|+|++++
T Consensus 116 ~~~~~G~i~~~~ 127 (127)
T cd04027 116 KSAVSGAIRLHI 127 (127)
T ss_pred CCcEeEEEEEEC
Confidence 335689998875
No 65
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.58 E-value=7.5e-15 Score=136.58 Aligned_cols=98 Identities=28% Similarity=0.487 Sum_probs=84.8
Q ss_pred eEEEEEEEEeeCCCCCCCC-chhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--eEE
Q 002960 17 GDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATV 93 (862)
Q Consensus 17 g~L~v~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~--~~~ 93 (862)
|+|.|+|++|++|+.++.. +. +||||+|.+.. ...
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~------------------------------------------~Dpyv~v~~~~~~~~~ 38 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGS------------------------------------------SDPYVTASFAKFGKPL 38 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCC------------------------------------------CCccEEEEEccCCCcc
Confidence 7899999999999988765 44 89999999843 345
Q ss_pred EeeeeccCCCCCceeeEEEEeecCC----CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEc
Q 002960 94 ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (862)
Q Consensus 94 ~rT~vi~~t~~P~Wne~f~~~v~~~----~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (862)
.||++++++.||+|||+|.|.+... ...+.|+|||.+.++ +++||++.+++.++... .+|+++
T Consensus 39 ~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~~---~~~~~~ 106 (111)
T cd04041 39 YSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIED---RNWMGR 106 (111)
T ss_pred EeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhcC---CCCCcc
Confidence 7999999999999999999988754 457999999999987 89999999999998833 479887
No 66
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.57 E-value=3.4e-14 Score=133.20 Aligned_cols=96 Identities=25% Similarity=0.476 Sum_probs=76.8
Q ss_pred CCcEEEEEECCeEEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEE
Q 002960 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR 155 (862)
Q Consensus 80 ~dpYv~v~l~~~~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~ 155 (862)
+||||.+.+++.+++||+++++ .||.|||+|.|.+.+. ...+.|.+||.+..+ +.++|.+ ++..+..+...+.
T Consensus 18 ~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v--~l~~~~~~~~~~~ 94 (117)
T cd08383 18 RDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGKV--ALSKLDLGQGKDE 94 (117)
T ss_pred CCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEEE--EecCcCCCCccee
Confidence 8999999999877789999999 9999999999999874 356788889887665 4666665 4555555777899
Q ss_pred EEEccCCCCCCCCCCceEEEEeee
Q 002960 156 WYDIIAPSGSPPKPGASIQLELKF 179 (862)
Q Consensus 156 w~~l~~~~~~~~~~~g~l~l~l~~ 179 (862)
||+|....++. +..|+|+|+++|
T Consensus 95 w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 95 WFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred EEECccCCCCC-CcCceEEEEEEC
Confidence 99996544432 468999999987
No 67
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.56 E-value=2e-14 Score=140.11 Aligned_cols=83 Identities=22% Similarity=0.400 Sum_probs=70.0
Q ss_pred CCcEEEEEECCe----EEEeeeeccCCCCCceeeEEEEeecC----------------CCceEEEEEEecCCCC-CeeeE
Q 002960 80 SDPYVTVVVPQA----TVARTRVLKNSQEPVWNEHFNIPLAH----------------PLSNLEIQVKDDDVFG-AQIIG 138 (862)
Q Consensus 80 ~dpYv~v~l~~~----~~~rT~vi~~t~~P~Wne~f~~~v~~----------------~~~~l~~~v~d~d~~~-~~~iG 138 (862)
+||||+|.+... ...||++++++.||+|||+|.|.+.. ....+.|+|||.+.++ +++||
T Consensus 19 sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG 98 (148)
T cd04010 19 CDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLG 98 (148)
T ss_pred CCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeE
Confidence 899999999542 34599999999999999999999851 1245899999999886 89999
Q ss_pred EEEEeceeeccC-ceeEEEEEccCC
Q 002960 139 TAAIPAHTIATG-ELISRWYDIIAP 162 (862)
Q Consensus 139 ~~~i~l~~l~~g-~~~~~w~~l~~~ 162 (862)
++.|++..+..+ .....||+|...
T Consensus 99 ~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 99 EVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEecccccccCCcCcceeecCCc
Confidence 999999999876 567899999544
No 68
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.56 E-value=1.3e-14 Score=137.17 Aligned_cols=104 Identities=23% Similarity=0.452 Sum_probs=87.3
Q ss_pred eeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--C-
Q 002960 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q- 90 (862)
Q Consensus 14 ~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~--~- 90 (862)
...+.|.|+|++|+||+.++..+. +||||++.+- .
T Consensus 11 ~~~~~L~V~V~~arnL~~~~~~~~------------------------------------------~dpyVKv~Llp~~~ 48 (124)
T cd08680 11 SGDSSLVISVEQLRNLSALSIPEN------------------------------------------SKVYVRVALLPCSS 48 (124)
T ss_pred CCCCEEEEEEeEecCCcccccCCC------------------------------------------CCeEEEEEEccCCC
Confidence 345789999999999998765443 8999999982 2
Q ss_pred --eEEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeecc-CceeEEEEEc
Q 002960 91 --ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT-GELISRWYDI 159 (862)
Q Consensus 91 --~~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~-g~~~~~w~~l 159 (862)
....||++++++.||+|||+|.|++++. ...+.|+||+.+.++ +++||.+.|++.++.. ++....||+|
T Consensus 49 ~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 49 STSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 2357999999999999999999998764 467899999999887 8999999999999854 4457889875
No 69
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.56 E-value=1.8e-14 Score=137.18 Aligned_cols=102 Identities=26% Similarity=0.533 Sum_probs=88.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 002960 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (862)
Q Consensus 16 ~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~----~ 91 (862)
.+.|.|+|++|+||+.++..+. +||||+|.+.. .
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~ 52 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDI------------------------------------------PDPYVRLYLLPDKSKS 52 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCC------------------------------------------CCceEEEEEEcCCCCC
Confidence 4789999999999998876554 89999999842 3
Q ss_pred EEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCC--C-CeeeEEEEEeceeeccCceeEEEEEc
Q 002960 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVF--G-AQIIGTAAIPAHTIATGELISRWYDI 159 (862)
Q Consensus 92 ~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~--~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (862)
...||++++++.||+|||+|.|.+... ...+.|+|||.+.+ + +++||.+.+++.++..++....||+|
T Consensus 53 ~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 53 TRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred ceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 457999999999999999999998654 36789999999875 4 89999999999999888888999997
No 70
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.55 E-value=2.5e-14 Score=135.80 Aligned_cols=101 Identities=28% Similarity=0.441 Sum_probs=84.7
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 002960 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (862)
Q Consensus 16 ~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~----~ 91 (862)
.|.|.|+|++|++|+.++..+. +||||+|.+.. .
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~ 52 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSL------------------------------------------RNPYVKVYLLPDRSEK 52 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCC------------------------------------------CCCEEEEEEccCCCcc
Confidence 4789999999999998876554 89999999954 3
Q ss_pred EEEeeeeccCCCCCceeeEEEEeecC----CCceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEc
Q 002960 92 TVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (862)
Q Consensus 92 ~~~rT~vi~~t~~P~Wne~f~~~v~~----~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (862)
.+.||++++++.||+|||+|.|.+.. ....|.|+|||.+.++ +++||++.+++.+.. ......||+|
T Consensus 53 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L 124 (125)
T cd04031 53 SKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPL 124 (125)
T ss_pred ccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEEC
Confidence 46799999999999999999999654 2467999999999887 899999999999833 2234689997
No 71
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.55 E-value=4.2e-14 Score=132.23 Aligned_cols=111 Identities=27% Similarity=0.453 Sum_probs=94.4
Q ss_pred EEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEeeee
Q 002960 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (862)
Q Consensus 19 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT~v 98 (862)
|+|+|++|++|+..+..+. +||||+|.+.+..+.+|++
T Consensus 1 l~v~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~~T~v 38 (115)
T cd04040 1 LTVDVISAENLPSADRNGK------------------------------------------SDPFVKFYLNGEKVFKTKT 38 (115)
T ss_pred CEEEEEeeeCCCCCCCCCC------------------------------------------CCCeEEEEECCCcceeece
Confidence 5799999999998775544 8999999998767789999
Q ss_pred ccCCCCCceeeEEEEeecCC-CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCCCCCCCCceEE
Q 002960 99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (862)
Q Consensus 99 i~~t~~P~Wne~f~~~v~~~-~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~l~ 174 (862)
+.++.+|+|||+|.|.+... ...+.|+|||.+..+ +++||++.+++.++..+...+.|++|...++. ..|.|.
T Consensus 39 ~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~---~~~~~~ 113 (115)
T cd04040 39 IKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGG---KLGAVF 113 (115)
T ss_pred ecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCCc---cCceEE
Confidence 99999999999999998864 567899999999887 89999999999999888888999999544432 355553
No 72
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.55 E-value=2.6e-14 Score=132.14 Aligned_cols=97 Identities=22% Similarity=0.391 Sum_probs=80.4
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEee
Q 002960 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (862)
Q Consensus 17 g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT 96 (862)
|.|.|+|++|++|+..+..+. .|. ++||||+|.+++. +.||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~-------------------------~~~-------------~~DPYv~v~~~~~-~~kT 41 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTR-------------------------TGF-------------DMDPFVIISFGRR-VFRT 41 (108)
T ss_pred CEEEEEEEeeeCCCCccccCC-------------------------CCC-------------ccCceEEEEECCE-eEee
Confidence 789999999999998764321 000 1899999999765 4699
Q ss_pred eeccCCCCCceeeEEEEeecCCC--ceEEEEEEecCCCC-CeeeEEEEEeceeeccCce
Q 002960 97 RVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (862)
Q Consensus 97 ~vi~~t~~P~Wne~f~~~v~~~~--~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~ 152 (862)
++++++.||+|||+|.|++.+.. ..|.|+|||++.++ +++||++.++|.++..++.
T Consensus 42 ~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 42 SWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred eeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhCC
Confidence 99999999999999999986543 46899999999987 8999999999999886643
No 73
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.54 E-value=4e-14 Score=134.50 Aligned_cols=103 Identities=30% Similarity=0.467 Sum_probs=88.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEE--CCeEE
Q 002960 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV--PQATV 93 (862)
Q Consensus 16 ~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l--~~~~~ 93 (862)
.++|.|+|++|++|+.++..+. +||||+|.+ .+...
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~~ 52 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGT------------------------------------------SDPFVKIYLLPDKKHK 52 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCC------------------------------------------CCceEEEEECCCCCcc
Confidence 4689999999999998776554 899999998 33445
Q ss_pred EeeeeccCCCCCceeeEEEEeecCC----CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEcc
Q 002960 94 ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (862)
Q Consensus 94 ~rT~vi~~t~~P~Wne~f~~~v~~~----~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~ 160 (862)
.||++++++.||+|||+|.|.+... ...+.|+|||.+.++ +++||++.+++.++..+...+.|++|.
T Consensus 53 ~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 53 LETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 7999999999999999999984322 346899999999887 899999999999999888899999983
No 74
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.54 E-value=4.2e-14 Score=131.54 Aligned_cols=97 Identities=21% Similarity=0.411 Sum_probs=85.4
Q ss_pred CCcEEEEEECCeEEEeeeeccCCCCCceeeEEEEeecCC-CceEEEEEEecCCCCCeeeEEEEEeceeecc-CceeEEEE
Q 002960 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIAT-GELISRWY 157 (862)
Q Consensus 80 ~dpYv~v~l~~~~~~rT~vi~~t~~P~Wne~f~~~v~~~-~~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~-g~~~~~w~ 157 (862)
+||||+|.+++...++|++++++.||+|||+|.|.+.+. ...|.|+|+|.+.+++++||.+.++|.++.. +...+.||
T Consensus 13 ~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~~w~ 92 (111)
T cd04052 13 LSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQQWF 92 (111)
T ss_pred CCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhccceeE
Confidence 899999999887778999999999999999999999876 4669999999998889999999999998853 44568999
Q ss_pred EccCCCCCCCCCCceEEEEeeeecC
Q 002960 158 DIIAPSGSPPKPGASIQLELKFTPC 182 (862)
Q Consensus 158 ~l~~~~~~~~~~~g~l~l~l~~~~~ 182 (862)
+|.+ ...|+|+++++|.|+
T Consensus 93 ~L~~------~~~G~i~~~~~~~p~ 111 (111)
T cd04052 93 PLSG------NGQGRIRISALWKPV 111 (111)
T ss_pred ECCC------CCCCEEEEEEEEecC
Confidence 9953 247999999999985
No 75
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.54 E-value=5.7e-14 Score=134.07 Aligned_cols=103 Identities=27% Similarity=0.386 Sum_probs=85.4
Q ss_pred eceEEEEEEEEeeCCCCCCCC-chhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--Ce
Q 002960 15 LHGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QA 91 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~--~~ 91 (862)
-.++|.|+|++|++|+.++.. +. +||||+|.+. +.
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~~------------------------------------------~DpyV~v~l~~~~~ 51 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSGT------------------------------------------SDPYVKLQLLPEKE 51 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCCC------------------------------------------cCCEEEEEEeCCcC
Confidence 357899999999999987754 33 8999999984 33
Q ss_pred EEEeeeeccCCCCCceeeEEEEe-ecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccC--ceeEEEEEc
Q 002960 92 TVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--ELISRWYDI 159 (862)
Q Consensus 92 ~~~rT~vi~~t~~P~Wne~f~~~-v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g--~~~~~w~~l 159 (862)
...||++++++.||+|||+|.|. +... ...+.|+|||.+.++ +++||++.+++.++..+ +....|++|
T Consensus 52 ~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 52 HKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred ceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 45699999999999999999994 4322 346899999999887 89999999999998644 668899987
No 76
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.53 E-value=4.8e-14 Score=133.80 Aligned_cols=101 Identities=26% Similarity=0.520 Sum_probs=89.6
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEee
Q 002960 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (862)
Q Consensus 17 g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT 96 (862)
|.|+|+|++|++|++++..+. +||||+|.+.+.. .+|
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~-~~T 37 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGK------------------------------------------IDPYVIIQCRTQE-RKS 37 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCC------------------------------------------cCceEEEEECCEe-eee
Confidence 789999999999998776554 8999999998765 599
Q ss_pred eeccC-CCCCceeeEEEEeecCC----CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEcc
Q 002960 97 RVLKN-SQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (862)
Q Consensus 97 ~vi~~-t~~P~Wne~f~~~v~~~----~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~ 160 (862)
+++++ +.||+|||+|.|.+..+ ...|.|+|||.+.++ +++||++.+++.++..+...+.|++|.
T Consensus 38 ~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~ 107 (124)
T cd04049 38 KVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELV 107 (124)
T ss_pred eEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEee
Confidence 99885 89999999999999887 467899999999886 899999999999998887889999983
No 77
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.53 E-value=3.4e-14 Score=134.53 Aligned_cols=103 Identities=29% Similarity=0.521 Sum_probs=87.9
Q ss_pred eceEEEEEEEEeeCCCCCC-CCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---
Q 002960 15 LHGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~--- 90 (862)
-.|.|.|+|++|+||+.++ ..+. +||||+|.+..
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~------------------------------------------~dpyv~v~l~~~~~ 49 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKR------------------------------------------SNPYVKVYLLPDKS 49 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCC------------------------------------------CCcEEEEEEecCCC
Confidence 4589999999999999876 3333 89999999831
Q ss_pred -eEEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEc
Q 002960 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (862)
Q Consensus 91 -~~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (862)
....||++++++.||+|||+|.|.+... ...+.|+|||.+.++ +++||++.+++.++..+...+.||+|
T Consensus 50 ~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 50 KQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred cCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 1457999999999999999999998763 457899999999887 79999999999999878788999986
No 78
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.53 E-value=8.8e-15 Score=140.78 Aligned_cols=117 Identities=21% Similarity=0.320 Sum_probs=94.5
Q ss_pred CCceeEeeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEE
Q 002960 8 DKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVV 87 (862)
Q Consensus 8 ~~~~~~~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~ 87 (862)
-++.+....|.|.|+|++|+||+.+|.... .++||||+|.
T Consensus 6 ~sL~Y~~~~~~L~V~V~karnL~~~d~~~~----------------------------------------~~~DpYVKv~ 45 (138)
T cd08407 6 LSISYLPAANRLLVVVIKAKNLHSDQLKLL----------------------------------------LGIDVSVKVT 45 (138)
T ss_pred EEEEEeCCCCeEEEEEEEecCCCccccCCC----------------------------------------CCCCeEEEEE
Confidence 345555567999999999999998874311 0189999999
Q ss_pred ECC----eEEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEc
Q 002960 88 VPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (862)
Q Consensus 88 l~~----~~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (862)
+.. ....||++++++.||+|||+|.|.+++. ...+.|+|||.|.++ +++||++.+++.. .|+..+.|.++
T Consensus 46 l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~m 123 (138)
T cd08407 46 LKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEM 123 (138)
T ss_pred EEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHH
Confidence 832 2355999999999999999999999875 356899999999998 8999999999974 67778889998
Q ss_pred cCCCCCC
Q 002960 160 IAPSGSP 166 (862)
Q Consensus 160 ~~~~~~~ 166 (862)
+...+++
T Consensus 124 l~~p~~~ 130 (138)
T cd08407 124 LDNPRRQ 130 (138)
T ss_pred HhCCCCc
Confidence 7766654
No 79
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.51 E-value=1.8e-13 Score=137.88 Aligned_cols=145 Identities=22% Similarity=0.236 Sum_probs=108.7
Q ss_pred chHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCcccccccccC
Q 002960 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (862)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~~~~ 320 (862)
.++++.+.++|.+|+++|+|+.|.|+++. . .....|.+.|.+++++||+|+||+++... ...
T Consensus 20 ~~~~~~i~~~I~~A~~~I~i~~~~~~~~~---~--------~~~~~l~~~L~~a~~rGv~V~il~~~~~~-~~~------ 81 (176)
T cd00138 20 RSDLDALLEAISNAKKSIYIASFYLSPLI---T--------EYGPVILDALLAAARRGVKVRILVDEWSN-TDL------ 81 (176)
T ss_pred chHHHHHHHHHHhhheEEEEEEeEecccc---c--------ccchHHHHHHHHHHHCCCEEEEEEccccc-CCc------
Confidence 67899999999999999999999988642 0 01268999999999999999999944432 110
Q ss_pred CcccCCcHHHHhhhcC---CCceEEecCCCCCCccccccccccccccccccceEEeccCCCCCCcceEEEEccccccCcc
Q 002960 321 GVMATHDEETKKFFKH---SSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (862)
Q Consensus 321 ~~~~~~~~~~~~~l~~---~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R 397 (862)
.........|.. .++++...+.... ...++|+|++|||++ ++++||.|+.+.+
T Consensus 82 ----~~~~~~~~~l~~~~~~~i~~~~~~~~~~------------~~~~~H~K~~iiD~~--------~~~vGS~N~~~~~ 137 (176)
T cd00138 82 ----KISSAYLDSLRALLDIGVRVFLIRTDKT------------YGGVLHTKLVIVDDE--------TAYIGSANLDGRS 137 (176)
T ss_pred ----hHHHHHHHHHHHhhcCceEEEEEcCCcc------------cccceeeeEEEEcCC--------EEEEECCcCChhh
Confidence 001233444543 3788765432110 135799999999998 9999999999955
Q ss_pred cCCCCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEeCH--HHHHHHHHHHHHHHhh
Q 002960 398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP--AAYDVLINFEQRWRKA 459 (862)
Q Consensus 398 ~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gp--aa~dl~~~F~~rW~~~ 459 (862)
+ ..++|+.+.+.+| +|.++.+.|.+.|+..
T Consensus 138 ~--------------------------------~~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 138 L--------------------------------TLNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred h--------------------------------hhhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 4 2467999999999 7999999999999863
No 80
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.51 E-value=2.2e-14 Score=137.95 Aligned_cols=108 Identities=29% Similarity=0.434 Sum_probs=91.2
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~---- 90 (862)
..|.|.|+|++|++|+.++..+. +||||+|.+..
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~------------------------------------------~DpyV~v~l~~~~~~ 48 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGY------------------------------------------SDPFVKLYLKPDAGK 48 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCC------------------------------------------CCcEEEEEEEcCCCc
Confidence 45899999999999998886654 89999999842
Q ss_pred eEEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCCCC
Q 002960 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (862)
Q Consensus 91 ~~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~ 166 (862)
....||++++++.||+|||+|.|.+... ...+.|+|||.+..+ +++||.+.+++.. .|+..+.|++++...+++
T Consensus 49 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~ 126 (133)
T cd08384 49 KSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKK 126 (133)
T ss_pred cCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCC
Confidence 3457999999999999999999998764 357999999999887 8999999999974 566778999998766654
No 81
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.51 E-value=1.1e-13 Score=128.79 Aligned_cols=82 Identities=24% Similarity=0.382 Sum_probs=71.3
Q ss_pred CCcEEEEEECCeEEEeeeeccCCCCCceeeEEEEeecCCC-----ceEEEEEEecCCCC-CeeeEEEEEeceeeccC---
Q 002960 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL-----SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--- 150 (862)
Q Consensus 80 ~dpYv~v~l~~~~~~rT~vi~~t~~P~Wne~f~~~v~~~~-----~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g--- 150 (862)
+||||+|.+++++ .||++++++.||.|||+|.|.+..+. ..|.|+|||.+.++ +++||++.+++.++..+
T Consensus 21 ~dpyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~ 99 (111)
T cd04011 21 IDPVVKVEVGGQK-KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDH 99 (111)
T ss_pred CCCEEEEEECCEe-eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCC
Confidence 8999999999876 59999999999999999999976542 56899999999887 89999999999998765
Q ss_pred ceeEEEEEccCC
Q 002960 151 ELISRWYDIIAP 162 (862)
Q Consensus 151 ~~~~~w~~l~~~ 162 (862)
.....|++|.++
T Consensus 100 ~~~~~w~~L~~~ 111 (111)
T cd04011 100 AFLRKWLLLTDP 111 (111)
T ss_pred cceEEEEEeeCc
Confidence 347899999653
No 82
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.51 E-value=6.9e-14 Score=136.79 Aligned_cols=98 Identities=26% Similarity=0.472 Sum_probs=85.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe----
Q 002960 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA---- 91 (862)
Q Consensus 16 ~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~---- 91 (862)
.+.|.|+|++|++|+.+|..+. +||||+|.+...
T Consensus 27 ~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~~~ 64 (153)
T cd08676 27 IFVLKVTVIEAKGLLAKDVNGF------------------------------------------SDPYCMLGIVPASRER 64 (153)
T ss_pred eEEEEEEEEeccCCcccCCCCC------------------------------------------CCceEEEEEccccccc
Confidence 4789999999999999887765 999999998531
Q ss_pred ------------------------EEEeeeeccCCCCCceeeEEEEeecCC-CceEEEEEEecCCCCCeeeEEEEEecee
Q 002960 92 ------------------------TVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHT 146 (862)
Q Consensus 92 ------------------------~~~rT~vi~~t~~P~Wne~f~~~v~~~-~~~l~~~v~d~d~~~~~~iG~~~i~l~~ 146 (862)
.+.+|++++++.||+|||+|.|.+.+. ...+.|+|||.+ +++||++.+++.+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~ 141 (153)
T cd08676 65 NSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKD 141 (153)
T ss_pred ccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHH
Confidence 347999999999999999999999874 467899999988 8999999999999
Q ss_pred eccCceeEEEEEc
Q 002960 147 IATGELISRWYDI 159 (862)
Q Consensus 147 l~~g~~~~~w~~l 159 (862)
+. +..++.||+|
T Consensus 142 l~-~~~~d~W~~L 153 (153)
T cd08676 142 LP-SCGLDSWFKL 153 (153)
T ss_pred hC-CCCCCCeEeC
Confidence 88 4457999986
No 83
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.50 E-value=1.7e-14 Score=138.82 Aligned_cols=113 Identities=21% Similarity=0.339 Sum_probs=91.0
Q ss_pred ceeEeeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC
Q 002960 10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (862)
Q Consensus 10 ~~~~~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~ 89 (862)
+.+....+.|.|+|++|+||+.++..+. +||||+|++-
T Consensus 8 L~Y~~~~~~L~V~Vi~A~nL~~~~~~g~------------------------------------------~DpyVkv~l~ 45 (136)
T cd08406 8 LSYLPTAERLTVVVVKARNLVWDNGKTT------------------------------------------ADPFVKVYLL 45 (136)
T ss_pred EEEcCCCCEEEEEEEEeeCCCCccCCCC------------------------------------------CCeEEEEEEE
Confidence 3443456789999999999998775554 8999999982
Q ss_pred --Ce--EEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccC
Q 002960 90 --QA--TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (862)
Q Consensus 90 --~~--~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~ 161 (862)
+. ...||+|++++.||+|||+|.|.++.. ...|.|+|||.|.++ +++||++.|+.. ..|+..+.|..++.
T Consensus 46 ~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~ 123 (136)
T cd08406 46 QDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLA 123 (136)
T ss_pred eCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHH
Confidence 22 245899999999999999999998764 466899999999887 899999999765 45677788988877
Q ss_pred CCCCC
Q 002960 162 PSGSP 166 (862)
Q Consensus 162 ~~~~~ 166 (862)
..+++
T Consensus 124 ~~~~~ 128 (136)
T cd08406 124 SLRKP 128 (136)
T ss_pred CCCCe
Confidence 65554
No 84
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.50 E-value=1.2e-13 Score=130.80 Aligned_cols=103 Identities=25% Similarity=0.434 Sum_probs=88.5
Q ss_pred eceEEEEEEEEeeCCCCCC-CCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--Ce
Q 002960 15 LHGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QA 91 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~--~~ 91 (862)
-.+.|.|+|++|++|+.++ ..+. +||||+|.+. +.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~------------------------------------------~dpyV~v~l~~~~~ 49 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAH------------------------------------------CDPFVKVCLLPDER 49 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCC------------------------------------------CCcEEEEEEeeCCC
Confidence 3578999999999999876 3433 8999999982 34
Q ss_pred EEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEc
Q 002960 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (862)
Q Consensus 92 ~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (862)
...||++++++.||+|||+|.|.+... ...+.|+|||.+..+ +++||++.+++.++........|++|
T Consensus 50 ~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 50 RSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred CceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence 457999999999999999999998764 357899999999887 89999999999999987778899998
No 85
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.50 E-value=2e-14 Score=138.81 Aligned_cols=116 Identities=27% Similarity=0.450 Sum_probs=94.6
Q ss_pred CCCceeEeeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEE
Q 002960 7 SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTV 86 (862)
Q Consensus 7 ~~~~~~~~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v 86 (862)
.-++.+....|.|.|+|++|++|+.++..+. +||||+|
T Consensus 5 ~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~------------------------------------------~dpyv~v 42 (136)
T cd08402 5 CFSLRYVPTAGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKI 42 (136)
T ss_pred EEEeEEcCCCCeEEEEEEEeeCCCcccCCCC------------------------------------------CCCeEEE
Confidence 3345555677999999999999998876554 8999999
Q ss_pred EEC--Ce--EEEeeeeccCCCCCceeeEEEEeecCCC---ceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEE
Q 002960 87 VVP--QA--TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD 158 (862)
Q Consensus 87 ~l~--~~--~~~rT~vi~~t~~P~Wne~f~~~v~~~~---~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~ 158 (862)
.+. +. ...+|++++++.||+|||+|.|++.... ..|.|+|||.+.++ +++||++.|++.. .|...+.|++
T Consensus 43 ~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~ 120 (136)
T cd08402 43 HLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSD 120 (136)
T ss_pred EEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHH
Confidence 984 22 3568999999999999999999987542 46899999999988 8999999999975 4667788999
Q ss_pred ccCCCCCC
Q 002960 159 IIAPSGSP 166 (862)
Q Consensus 159 l~~~~~~~ 166 (862)
++...+++
T Consensus 121 ~~~~~~~~ 128 (136)
T cd08402 121 MLASPRRP 128 (136)
T ss_pred HHhCCCCe
Confidence 87765554
No 86
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.50 E-value=2.1e-13 Score=132.58 Aligned_cols=91 Identities=31% Similarity=0.645 Sum_probs=82.0
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEee
Q 002960 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (862)
Q Consensus 17 g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT 96 (862)
|.|.|+|++|++|+..+. +. +||||++.++++. .||
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~------------------------------------------sDPYV~v~~g~~~-~kT 37 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TS------------------------------------------SDPYVVLTLGNQK-VKT 37 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CC------------------------------------------cCcEEEEEECCEE-EEe
Confidence 899999999999997765 33 8999999998765 699
Q ss_pred eeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeeccCc
Q 002960 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE 151 (862)
Q Consensus 97 ~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~ 151 (862)
++++++.||+|||+|.|.+.++...+.|+|||++.++ +++||++.+++.++....
T Consensus 38 ~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 38 RVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred eeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhh
Confidence 9999999999999999999998888999999999988 899999999998877543
No 87
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.50 E-value=4.4e-14 Score=134.16 Aligned_cols=115 Identities=19% Similarity=0.310 Sum_probs=90.0
Q ss_pred CceeEeeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEE
Q 002960 9 KEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV 88 (862)
Q Consensus 9 ~~~~~~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l 88 (862)
++.+....|.|.|+|++|+||+.++.... .||||+|.+
T Consensus 6 sL~Y~p~~~rLtV~VikarnL~~~~~~~~------------------------------------------~dpYVKV~L 43 (135)
T cd08692 6 GTCFQAVNSRIQLQILEAQNLPSSSTPLT------------------------------------------LSFFVKVGM 43 (135)
T ss_pred EeeecCcCCeEEEEEEEccCCCcccCCCC------------------------------------------CCcEEEEEE
Confidence 34556678999999999999997642222 799999998
Q ss_pred C----CeEEEeeeeccCCC-CCceeeEEEEeecCCCce--EEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEcc
Q 002960 89 P----QATVARTRVLKNSQ-EPVWNEHFNIPLAHPLSN--LEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (862)
Q Consensus 89 ~----~~~~~rT~vi~~t~-~P~Wne~f~~~v~~~~~~--l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~ 160 (862)
- .....||++++++. +|+|||+|.|.++.+... +.++|+|.+..+ +++||++.++.... .++..++|.+++
T Consensus 44 ~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~ 122 (135)
T cd08692 44 FSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTI 122 (135)
T ss_pred EECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHH
Confidence 2 23456999999985 699999999999876444 578889988876 89999999999763 355578999987
Q ss_pred CCCCCC
Q 002960 161 APSGSP 166 (862)
Q Consensus 161 ~~~~~~ 166 (862)
...+++
T Consensus 123 ~~pr~~ 128 (135)
T cd08692 123 ANPEKV 128 (135)
T ss_pred hCCCCe
Confidence 765554
No 88
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.49 E-value=1.3e-13 Score=133.19 Aligned_cols=100 Identities=21% Similarity=0.417 Sum_probs=86.3
Q ss_pred EEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---eEEEe
Q 002960 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---ATVAR 95 (862)
Q Consensus 19 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~---~~~~r 95 (862)
|.|+|++|++|+.+ ..+. +||||+|.+.. ..+.|
T Consensus 1 L~V~Vi~A~~L~~~-~~g~------------------------------------------~dPyv~v~~~~~~~~~~~r 37 (137)
T cd08675 1 LSVRVLECRDLALK-SNGT------------------------------------------CDPFARVTLNYSSKTDTKR 37 (137)
T ss_pred CEEEEEEccCCCcc-cCCC------------------------------------------CCcEEEEEEecCCcCCeec
Confidence 57999999999876 4443 89999999973 45679
Q ss_pred eeeccCCCCCceeeEEEEeecCC----------------CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEE
Q 002960 96 TRVLKNSQEPVWNEHFNIPLAHP----------------LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD 158 (862)
Q Consensus 96 T~vi~~t~~P~Wne~f~~~v~~~----------------~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~ 158 (862)
|++++++.||.|||+|.|++... ...+.|+|||.+.++ +++||++.+++.++........||+
T Consensus 38 T~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~ 117 (137)
T cd08675 38 TKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYF 117 (137)
T ss_pred cceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEe
Confidence 99999999999999999998764 357899999999886 8999999999999887777899999
Q ss_pred ccC
Q 002960 159 IIA 161 (862)
Q Consensus 159 l~~ 161 (862)
|..
T Consensus 118 L~~ 120 (137)
T cd08675 118 LQP 120 (137)
T ss_pred cCC
Confidence 943
No 89
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.49 E-value=3.7e-14 Score=136.89 Aligned_cols=108 Identities=27% Similarity=0.462 Sum_probs=90.5
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--Ce-
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QA- 91 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~--~~- 91 (862)
-.+.|.|+|++|++|+.+|..+. +||||+|.+. +.
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~Dpyv~v~l~~~~~~ 50 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGL------------------------------------------ADPYVKVNLYYGKKR 50 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCC------------------------------------------CCeEEEEEEEcCCce
Confidence 45789999999999998876654 8999999983 22
Q ss_pred -EEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCCCC
Q 002960 92 -TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (862)
Q Consensus 92 -~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~ 166 (862)
...||+|++++.||+|||+|.|.+... ...+.|+|||.+.++ +++||++.+++.. .+...+.|+++.+..|++
T Consensus 51 ~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~ 128 (136)
T cd08404 51 ISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQ 128 (136)
T ss_pred eeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCe
Confidence 246899999999999999999998753 356899999999987 8999999999987 466678899997766654
No 90
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.49 E-value=1.4e-13 Score=130.62 Aligned_cols=102 Identities=22% Similarity=0.382 Sum_probs=87.1
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEE--CCeE
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV--PQAT 92 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l--~~~~ 92 (862)
-.+.|.|+|++|+||+.++..+. +||||++.+ .+..
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~~~~------------------------------------------~d~yVk~~llp~~~~ 51 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDRGGA------------------------------------------SSWQVHLVLLPSKKQ 51 (124)
T ss_pred CCCEEEEEEEEecCCCchhcCCC------------------------------------------CCcEEEEEEccCCcc
Confidence 34789999999999998875443 899999887 2234
Q ss_pred EEeeeeccCCCCCceeeEEEEe-ecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEc
Q 002960 93 VARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (862)
Q Consensus 93 ~~rT~vi~~t~~P~Wne~f~~~-v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (862)
..||+|.++ .||+|||+|.|+ +... ...+.|+|||.+.++ +++||++.|++.++..+.....|++|
T Consensus 52 ~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L 122 (124)
T cd08389 52 RAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122 (124)
T ss_pred eeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence 569999988 999999999998 5543 467899999999888 89999999999999888889999998
No 91
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.49 E-value=1.1e-13 Score=137.48 Aligned_cols=103 Identities=26% Similarity=0.409 Sum_probs=86.8
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC----C
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----Q 90 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~----~ 90 (862)
..|.|.|+|++|+||+.++..+. +||||+|.+. +
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~------------------------------------------~DPYVkv~l~~~~~~ 62 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGT------------------------------------------SDSFVKCYLLPDKSK 62 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence 45899999999999998876554 8999999882 2
Q ss_pred eEEEeeeeccCCCCCceeeEEEEeecCC----CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEc
Q 002960 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (862)
Q Consensus 91 ~~~~rT~vi~~t~~P~Wne~f~~~v~~~----~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (862)
..+.||+|++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||++.+++.++......+.|+++
T Consensus 63 ~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 63 KSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred CcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 3567999999999999999999985432 246899999999988 89999999999998765556778777
No 92
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.48 E-value=4.6e-13 Score=127.58 Aligned_cols=116 Identities=29% Similarity=0.525 Sum_probs=96.0
Q ss_pred EEEEEEEEeeCCCCCC--CCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC-----C
Q 002960 18 DLDLKIIRARRLPNMD--MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP-----Q 90 (862)
Q Consensus 18 ~L~v~I~~A~~L~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~-----~ 90 (862)
.|+|+|++|++|+.++ ..+. +||||++++. +
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~ 40 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSI------------------------------------------VDPYVEVEIHGLPADD 40 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCc------------------------------------------cCCEEEEEEEeCCCCC
Confidence 5899999999999766 2332 8999999993 2
Q ss_pred eEEEeeeeccCCC-CCceeeEEEEeecCCC-ceEEEEEEecCCCCCeeeEEEEEeceeeccCceeEEEEEccCCCCCCCC
Q 002960 91 ATVARTRVLKNSQ-EPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (862)
Q Consensus 91 ~~~~rT~vi~~t~-~P~Wne~f~~~v~~~~-~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~ 168 (862)
....||++++++. ||+|||+|.|.+..+. ..+.|+|||.+..++++||.+.+++.++..|. .|++|.+..|++ .
T Consensus 41 ~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~-~ 116 (128)
T cd00275 41 SAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQGY---RHVPLLDSKGEP-L 116 (128)
T ss_pred CCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCce---EEEEecCCCCCC-C
Confidence 3446999988865 9999999999988664 56899999998878899999999999997663 789998888874 4
Q ss_pred CCceEEEEeee
Q 002960 169 PGASIQLELKF 179 (862)
Q Consensus 169 ~~g~l~l~l~~ 179 (862)
..|+|.+++++
T Consensus 117 ~~~~l~v~~~~ 127 (128)
T cd00275 117 ELSTLFVHIDI 127 (128)
T ss_pred cceeEEEEEEE
Confidence 57999998875
No 93
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.48 E-value=3.7e-14 Score=136.53 Aligned_cols=112 Identities=32% Similarity=0.477 Sum_probs=92.1
Q ss_pred eeEeeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC-
Q 002960 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP- 89 (862)
Q Consensus 11 ~~~~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~- 89 (862)
.+....|.|+|+|++|++|+.++..+. +||||+|.+.
T Consensus 8 ~y~~~~~~L~V~v~~A~~L~~~d~~g~------------------------------------------~dpyvkv~l~~ 45 (134)
T cd08403 8 CYLPTAGRLTLTIIKARNLKAMDITGF------------------------------------------SDPYVKVSLMC 45 (134)
T ss_pred EEcCCCCEEEEEEEEeeCCCccccCCC------------------------------------------CCceEEEEEEe
Confidence 334467899999999999998887665 8999999983
Q ss_pred -C--eEEEeeeeccCCCCCceeeEEEEeecCCC---ceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCC
Q 002960 90 -Q--ATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (862)
Q Consensus 90 -~--~~~~rT~vi~~t~~P~Wne~f~~~v~~~~---~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~ 162 (862)
+ ....||++++++.||.|||+|.|.+.... ..+.|+|||.+.++ +++||++.|++. ..+...+.|++++..
T Consensus 46 ~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~ 123 (134)
T cd08403 46 EGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLAN 123 (134)
T ss_pred CCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHC
Confidence 2 23569999999999999999999986542 35899999999988 899999999987 445556789999877
Q ss_pred CCCC
Q 002960 163 SGSP 166 (862)
Q Consensus 163 ~~~~ 166 (862)
.+++
T Consensus 124 ~~~~ 127 (134)
T cd08403 124 PRKP 127 (134)
T ss_pred CCCe
Confidence 6665
No 94
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.47 E-value=5.1e-14 Score=135.90 Aligned_cols=108 Identities=29% Similarity=0.469 Sum_probs=89.6
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--C--
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q-- 90 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~--~-- 90 (862)
..|+|.|+|++|++|+.++..+. +||||+|.+. +
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~------------------------------------------~dpyV~v~l~~~~~~ 50 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGT------------------------------------------SDPYVKVWLMYKDKR 50 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCC------------------------------------------CCceEEEEEEeCCCc
Confidence 45899999999999998776554 8999999982 2
Q ss_pred eEEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCCCC
Q 002960 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (862)
Q Consensus 91 ~~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~ 166 (862)
....||++++++.||+|||+|.|.+... ...+.|+|||.+.++ +++||++.+++... |...+.|++++...+++
T Consensus 51 ~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~ 128 (136)
T cd08405 51 VEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQP 128 (136)
T ss_pred cccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCc
Confidence 2356999999999999999999997642 357899999999987 89999999999875 56667888887766654
No 95
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.47 E-value=2.9e-13 Score=129.77 Aligned_cols=107 Identities=26% Similarity=0.434 Sum_probs=90.9
Q ss_pred EeeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--
Q 002960 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (862)
Q Consensus 13 ~~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~-- 90 (862)
-+-.+.|.|+|++|++|+..+..+. +||||+|.+..
T Consensus 9 ~~~~~~l~v~i~~a~nL~~~~~~~~------------------------------------------~dpyv~v~~~~~~ 46 (131)
T cd04026 9 SVKDNKLTVEVREAKNLIPMDPNGL------------------------------------------SDPYVKLKLIPDP 46 (131)
T ss_pred EECCCEEEEEEEEeeCCCCcCCCCC------------------------------------------CCCcEEEEEEcCC
Confidence 3456899999999999997765443 89999999953
Q ss_pred --eEEEeeeeccCCCCCceeeEEEEeecCC--CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCC
Q 002960 91 --ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (862)
Q Consensus 91 --~~~~rT~vi~~t~~P~Wne~f~~~v~~~--~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~ 162 (862)
...+||++++++.+|.|||+|.|++... ...+.|+|||.+.++ +++||++.+++.++... ..+.||+|.++
T Consensus 47 ~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 47 KNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 3567999999999999999999998764 457899999999876 89999999999998854 67899999765
No 96
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.47 E-value=6.5e-13 Score=126.25 Aligned_cols=97 Identities=24% Similarity=0.396 Sum_probs=78.7
Q ss_pred CCcEEEEEECCeEEEeeeeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeeccCce-----e
Q 002960 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-----I 153 (862)
Q Consensus 80 ~dpYv~v~l~~~~~~rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~-----~ 153 (862)
+||||+|.+++...+||++++++.||+|||+|.|.+.. ...+.|+|||.+..+ +++||++.+++.++..... .
T Consensus 22 ~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 100 (125)
T cd04021 22 PDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENV 100 (125)
T ss_pred CCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccce
Confidence 89999999987756899999999999999999999864 468999999999987 8999999999998874322 4
Q ss_pred EEEEEccCCCCCCCCCCceEEEEe
Q 002960 154 SRWYDIIAPSGSPPKPGASIQLEL 177 (862)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~l~l~l 177 (862)
..|+++..++....+..|+|.+++
T Consensus 101 ~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 101 KLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEccCCCcceeeeeEEEEe
Confidence 469998644411224578888875
No 97
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.46 E-value=2.7e-13 Score=128.56 Aligned_cols=88 Identities=27% Similarity=0.421 Sum_probs=76.0
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEee
Q 002960 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (862)
Q Consensus 17 g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT 96 (862)
|+|+|+|++|++|+. +..+. +||||+|.+++. +.||
T Consensus 28 ~~L~V~V~~A~~L~~-d~~g~------------------------------------------~DPYVkV~~~~~-~~kT 63 (127)
T cd04032 28 ATLTVTVLRATGLWG-DYFTS------------------------------------------TDGYVKVFFGGQ-EKRT 63 (127)
T ss_pred EEEEEEEEECCCCCc-CcCCC------------------------------------------CCeEEEEEECCc-cccC
Confidence 899999999999973 44443 899999999876 5799
Q ss_pred eeccCCCCCceeeEEEEeecC--CCceEEEEEEecCCCC-CeeeEEEEEeceeec
Q 002960 97 RVLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (862)
Q Consensus 97 ~vi~~t~~P~Wne~f~~~v~~--~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~ 148 (862)
++++++.||+|||+|.|.... ....|.|+|||.+.++ +++||++.+++....
T Consensus 64 ~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 64 EVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred ceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 999999999999999998533 3678999999999996 899999999998544
No 98
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=3.3e-13 Score=153.18 Aligned_cols=129 Identities=26% Similarity=0.396 Sum_probs=107.7
Q ss_pred eeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--Ce
Q 002960 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QA 91 (862)
Q Consensus 14 ~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~--~~ 91 (862)
+-+..|.|+|++|++|+.+|..+. +||||++++- ..
T Consensus 164 ~~~~~L~V~V~qa~~Lp~~d~~g~------------------------------------------sdpyVK~~llPdk~ 201 (421)
T KOG1028|consen 164 FELNLLTVRVIQAHDLPAKDRGGT------------------------------------------SDPYVKVYLLPDKK 201 (421)
T ss_pred ccCCEEEEEEEEecCCCcccCCCC------------------------------------------CCCeeEEEEcCCCC
Confidence 566789999999999999883332 8999999993 33
Q ss_pred EEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCCCCC
Q 002960 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP 167 (862)
Q Consensus 92 ~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~ 167 (862)
...+|+|.++++||+|||+|.|++++. ...+.|+|||.|.|+ +++||++.+++..+........|.++........
T Consensus 202 ~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~ 281 (421)
T KOG1028|consen 202 GKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSE 281 (421)
T ss_pred CcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcc
Confidence 456999999999999999999998776 467899999999999 8999999999998887766888999965533333
Q ss_pred CCCceEEEEeeeecCCC
Q 002960 168 KPGASIQLELKFTPCDK 184 (862)
Q Consensus 168 ~~~g~l~l~l~~~~~~~ 184 (862)
...|+|.++++|.|.+.
T Consensus 282 ~~~gel~~sL~Y~p~~g 298 (421)
T KOG1028|consen 282 ELAGELLLSLCYLPTAG 298 (421)
T ss_pred cccceEEEEEEeecCCC
Confidence 34489999999999743
No 99
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.45 E-value=1e-13 Score=133.16 Aligned_cols=107 Identities=32% Similarity=0.539 Sum_probs=91.5
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 002960 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (862)
Q Consensus 16 ~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~----~ 91 (862)
.++|.|+|++|++|+.++..+. +||||++.+.. .
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~ 50 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGL------------------------------------------SDPYVKVSLLQGGKKL 50 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCC------------------------------------------CCcEEEEEEEcCCeEe
Confidence 4799999999999998775444 89999999843 2
Q ss_pred EEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCCCC
Q 002960 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (862)
Q Consensus 92 ~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~ 166 (862)
...+|++++++.||.|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++.+ .+...+.|++|+...+++
T Consensus 51 ~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~ 127 (134)
T cd00276 51 KKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKP 127 (134)
T ss_pred eeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCc
Confidence 356999999999999999999998775 367999999999876 8999999999998 677789999998776654
No 100
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.43 E-value=1.3e-13 Score=133.24 Aligned_cols=109 Identities=20% Similarity=0.408 Sum_probs=89.9
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--e-
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A- 91 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~--~- 91 (862)
..+.|.|+|++|+||+.++ .+. +||||+|.+.. .
T Consensus 13 ~~~~L~V~V~~a~nL~~~~-~~~------------------------------------------~d~yVkv~l~~~~~~ 49 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLD-HAH------------------------------------------TSVYVKVSLMIHNKV 49 (137)
T ss_pred CCCeEEEEEEEecCCCccc-CCC------------------------------------------CCeEEEEEEEECCEE
Confidence 4588999999999999877 443 89999999832 2
Q ss_pred -EEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCCCC
Q 002960 92 -TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (862)
Q Consensus 92 -~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~ 166 (862)
...||++++++.||+|||+|.|.+... ...|.|+|||.+..+ +++||++.|+......|+..+.|.+++...+++
T Consensus 50 ~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~ 129 (137)
T cd08409 50 VKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKEL 129 (137)
T ss_pred eeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCc
Confidence 345999999999999999999998754 357899999999877 899999999987777787788898887654443
No 101
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.43 E-value=1.7e-12 Score=120.07 Aligned_cols=65 Identities=34% Similarity=0.538 Sum_probs=56.2
Q ss_pred CCcEEEEEECC----eEEEeeeeccCCCCCceeeEEEEeecCCCceEEEEEEec-------CCCC-CeeeEEEEEece
Q 002960 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD-------DVFG-AQIIGTAAIPAH 145 (862)
Q Consensus 80 ~dpYv~v~l~~----~~~~rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~-------d~~~-~~~iG~~~i~l~ 145 (862)
+||||++.+.. ..++||+++++|+||+|||+|.|++.. ...+.++|||. |..+ +++||++.+.+.
T Consensus 15 sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 15 ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred CCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccccccCcccEEEEEEEEEC
Confidence 89999998853 357899999999999999999999974 66899999997 4555 899999988875
No 102
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.43 E-value=6.2e-14 Score=150.09 Aligned_cols=105 Identities=27% Similarity=0.459 Sum_probs=92.7
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEE----CC
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV----PQ 90 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l----~~ 90 (862)
-...|+|+|.+|+||-.||.++. +||||++.+ .+
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGl------------------------------------------SDPYvk~kliPD~~~ 215 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGL------------------------------------------SDPYVKLKLIPDPKN 215 (683)
T ss_pred cCceEEEEehhhccccccCCCCC------------------------------------------CCcceeEEeccCCcc
Confidence 34569999999999999999987 999999998 23
Q ss_pred eEEEeeeeccCCCCCceeeEEEEeecCC--CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCC
Q 002960 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (862)
Q Consensus 91 ~~~~rT~vi~~t~~P~Wne~f~~~v~~~--~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~ 162 (862)
...++|++++.++||+|||+|+|.+.+. ...+.++|||+|..+ ++|+|..++.+++|. ..++++||.|+..
T Consensus 216 ~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~-K~p~~GWyKlLsq 289 (683)
T KOG0696|consen 216 ESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQ-KAPVDGWYKLLSQ 289 (683)
T ss_pred hhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccccccccceecccHHHHh-hcchhhHHHHhhh
Confidence 4567999999999999999999999876 456899999999988 899999999999988 4568999999865
No 103
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.42 E-value=1.9e-12 Score=147.26 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=104.2
Q ss_pred CCeeeEEEeeccCCCCCCCCCCchhhhcccccccccccchhHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCc
Q 002960 520 ENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGA 599 (862)
Q Consensus 520 ~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~ 599 (862)
..|.++++.|++.+- .|+. .-.|..++|+++|.+||++|+|+++||+++.. .
T Consensus 4 ~~~~~~~vesiP~~~--~~~~-----------------~~~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d~---------~ 55 (424)
T PHA02820 4 DNTIAVITETIPIGM--QFDK-----------------VYLSTFNFWREILSNTTKTLDISSFYWSLSDE---------V 55 (424)
T ss_pred cccEEEEEEecCCCC--CCCC-----------------CCCCHHHHHHHHHHhhCcEEEEEeEEEecCcc---------c
Confidence 467899999997653 2321 12688999999999999999999999994311 0
Q ss_pred CCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCcchhhhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEee
Q 002960 600 DNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYC 679 (862)
Q Consensus 600 ~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~ 679 (862)
....+..+..+|.++.+ +||+|+|+++.. +.+ .. ..+.|.++|+++ ..|.
T Consensus 56 ~~~~G~~i~~aL~~aA~--rGV~VRIL~d~~--~~~-------------~~-------~~~~L~~aGv~v------~~~~ 105 (424)
T PHA02820 56 GTNFGTMILNEIIQLPK--RGVRVRIAVNKS--NKP-------------LK-------DVELLQMAGVEV------RYID 105 (424)
T ss_pred cchhHHHHHHHHHHHHH--CCCEEEEEECCC--CCc-------------hh-------hHHHHHhCCCEE------EEEe
Confidence 01224567778877765 459999999842 111 01 146788889864 2332
Q ss_pred CCCcCCCCcccccCCCCcccccccccceeeEEEeEEEEEeeeEEEecCcCccccccCCCCCcceEEEeeC
Q 002960 680 LGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQ 749 (862)
Q Consensus 680 l~~~e~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d 749 (862)
... + .....|+|+||||+++++|||+||+.||+..+ .|+++.+.+
T Consensus 106 ~~~---------------------~--~~~~~HrK~~VIDg~~~~iGS~Nid~rsl~~n--~E~gv~i~~ 150 (424)
T PHA02820 106 ITN---------------------I--LGGVLHTKFWISDNTHIYLGSANMDWRSLTQV--KELGIAIFN 150 (424)
T ss_pred cCC---------------------C--CcccceeeEEEECCCEEEEeCCcCChhhhhhC--CceEEEEec
Confidence 110 0 12469999999999999999999999999855 899888764
No 104
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.42 E-value=6.2e-13 Score=127.85 Aligned_cols=91 Identities=30% Similarity=0.456 Sum_probs=79.6
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC------
Q 002960 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ------ 90 (862)
Q Consensus 17 g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~------ 90 (862)
+.|.|+|++|++|+.++..+. +||||+|.+..
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~------------------------------------------~dPyv~v~l~~~~~~~~ 53 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGS------------------------------------------SDPFVKVELLPRHLFPD 53 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCC------------------------------------------CCCEEEEEEECCCcCcc
Confidence 689999999999998876554 89999999852
Q ss_pred eEEEeeeeccCCCCCceeeEEEEeecCC-----CceEEEEEEecCCCC-CeeeEEEEEeceeecc
Q 002960 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT 149 (862)
Q Consensus 91 ~~~~rT~vi~~t~~P~Wne~f~~~v~~~-----~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~ 149 (862)
....||++++++.||+|||+|.|++... ...+.|+|||.+.++ +++||++.+++.++..
T Consensus 54 ~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 54 VPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred ccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 3467999999999999999999998753 457899999999988 8999999999998874
No 105
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.41 E-value=1.9e-13 Score=131.79 Aligned_cols=110 Identities=23% Similarity=0.409 Sum_probs=87.4
Q ss_pred eeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEE-CC--
Q 002960 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV-PQ-- 90 (862)
Q Consensus 14 ~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l-~~-- 90 (862)
..-|.|.|+|++|++|+.+|..+. +||||+|.+ .+
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyV~v~l~~~~~ 48 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQG------------------------------------------SDPFVKIQLVHGLK 48 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCC------------------------------------------CCeEEEEEEEcCCc
Confidence 355899999999999998886665 899999997 32
Q ss_pred -eEEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCCC
Q 002960 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (862)
Q Consensus 91 -~~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~ 165 (862)
....+|++++++.||+|||+|.|.+... ...+.|+|||.+..+ +++||++.|...... +...+.|+.++...++
T Consensus 49 ~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~~~~ 127 (135)
T cd08410 49 LIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNSQRT 127 (135)
T ss_pred ccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHhCCCC
Confidence 2346999999999999999999998653 235899999999877 899999987653222 2245789999877666
Q ss_pred C
Q 002960 166 P 166 (862)
Q Consensus 166 ~ 166 (862)
+
T Consensus 128 ~ 128 (135)
T cd08410 128 A 128 (135)
T ss_pred E
Confidence 5
No 106
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.41 E-value=3.2e-12 Score=123.00 Aligned_cols=115 Identities=23% Similarity=0.382 Sum_probs=90.3
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--e----
Q 002960 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A---- 91 (862)
Q Consensus 18 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~--~---- 91 (862)
.+.|++++|++|+ ++.++. +||||++.+.. .
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~------------------------------------------~DPyvki~~~~~~~~~~~ 38 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFN------------------------------------------PDPYVKISIQPGKRHIFP 38 (137)
T ss_pred EEEEEEEEeCCCC-CccCCC------------------------------------------CCceEEEEEECCCccccc
Confidence 3689999999998 666665 99999999932 1
Q ss_pred ------EEEeeeeccCCCCCce-eeEEEEeecCCCceEEEEEEecCCCC----CeeeEEEEEeceeeccCc---eeEEEE
Q 002960 92 ------TVARTRVLKNSQEPVW-NEHFNIPLAHPLSNLEIQVKDDDVFG----AQIIGTAAIPAHTIATGE---LISRWY 157 (862)
Q Consensus 92 ------~~~rT~vi~~t~~P~W-ne~f~~~v~~~~~~l~~~v~d~d~~~----~~~iG~~~i~l~~l~~g~---~~~~w~ 157 (862)
...||++++++.||+| ||+|.|.+.. ...+.|+|||.+..+ +++||++.+|+.++..+. ....|+
T Consensus 39 ~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~ 117 (137)
T cd08691 39 ALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSY 117 (137)
T ss_pred ccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEE
Confidence 2579999999999999 9999999864 457999999976533 699999999999987543 367899
Q ss_pred EccCCCCCCCCCCceEEEEe
Q 002960 158 DIIAPSGSPPKPGASIQLEL 177 (862)
Q Consensus 158 ~l~~~~~~~~~~~g~l~l~l 177 (862)
++. ..+-.....|+|.+.+
T Consensus 118 ~l~-k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 118 TLG-RRTPTDHVSGQLTFRF 136 (137)
T ss_pred ECC-cCCCCCcEEEEEEEEe
Confidence 984 3333335678887765
No 107
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.41 E-value=1.6e-12 Score=125.69 Aligned_cols=110 Identities=19% Similarity=0.356 Sum_probs=86.9
Q ss_pred eeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC---C
Q 002960 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP---Q 90 (862)
Q Consensus 14 ~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~---~ 90 (862)
...++|.|+|++|+||+.++..+. +||||++.+- +
T Consensus 12 ~~~~~L~V~VikarnL~~~~~~~~------------------------------------------~dpyVkv~llp~~~ 49 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNLAMNKA------------------------------------------PDTYVKLTLLNSDG 49 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCC------------------------------------------CCeeEEEEEEeCCC
Confidence 345899999999999998776554 8999999982 2
Q ss_pred e--EEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCC
Q 002960 91 A--TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (862)
Q Consensus 91 ~--~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~ 164 (862)
. ...||++++++.||+|||+|.|++... ...+.|+|||.+.++ +++||++.+++...- .+..+.|+.++...+
T Consensus 50 ~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~~~ 128 (138)
T cd08408 50 QEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKESKG 128 (138)
T ss_pred cceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhCCC
Confidence 2 245999999999999999999998754 357899999999877 899999999887432 123467887766555
Q ss_pred CC
Q 002960 165 SP 166 (862)
Q Consensus 165 ~~ 166 (862)
++
T Consensus 129 ~~ 130 (138)
T cd08408 129 QQ 130 (138)
T ss_pred CE
Confidence 43
No 108
>PRK13912 nuclease NucT; Provisional
Probab=99.39 E-value=7.4e-12 Score=126.29 Aligned_cols=141 Identities=16% Similarity=0.253 Sum_probs=99.6
Q ss_pred chHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCcccccccccC
Q 002960 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (862)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~~~~ 320 (862)
.++++.+.++|++|+++|+|+.|.+.+ ..+.+.|.+|++|||+|+|++ |...+...
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~Y~~~~-----------------~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~------ 87 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAIYSFTH-----------------KDIAKALKSAAKRGVKISIIY-DYESNHNN------ 87 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEEEEEch-----------------HHHHHHHHHHHHCCCEEEEEE-eCccccCc------
Confidence 467889999999999999999887743 479999999999999999997 76533210
Q ss_pred CcccCCcHHHHhhhc-CCCceEEecCCCCCCccccccccccccccccccceEEeccCCCCCCcceEEEEccccccCcccC
Q 002960 321 GVMATHDEETKKFFK-HSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYD 399 (862)
Q Consensus 321 ~~~~~~~~~~~~~l~-~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~D 399 (862)
+.....++. .+++++........... .....+|.|++|||++ ++|+||.|++...+.
T Consensus 88 ------~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~H~K~~viD~~--------~~~iGS~N~t~~s~~ 145 (177)
T PRK13912 88 ------DQSTIGYLDKYPNIKVCLLKGLKAKNG--------KYYGIMHQKVAIIDDK--------IVVLGSANWSKNAFE 145 (177)
T ss_pred ------chhHHHHHHhCCCceEEEecCccccCc--------ccccccceeEEEEcCC--------EEEEeCCCCChhHhc
Confidence 111222232 34666554221110000 1123589999999998 999999999985442
Q ss_pred CCCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEeCH-HHHHHHHHHHHHHHhh
Q 002960 400 TPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKA 459 (862)
Q Consensus 400 t~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gp-aa~dl~~~F~~rW~~~ 459 (862)
--+++.+.+..| .+.++.+.|.+.|..+
T Consensus 146 --------------------------------~N~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 146 --------------------------------NNYEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred --------------------------------cCCceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 123677888887 5699999999999764
No 109
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.39 E-value=2.1e-12 Score=122.63 Aligned_cols=116 Identities=24% Similarity=0.358 Sum_probs=89.4
Q ss_pred EEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeE-EEeee
Q 002960 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT-VARTR 97 (862)
Q Consensus 19 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~-~~rT~ 97 (862)
|.|+|++|++|+.+|..+. +||||+|.+++.. ..||+
T Consensus 2 lrV~Vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~~kT~ 39 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGK------------------------------------------SDPYLKIKLGKKKINDRDN 39 (124)
T ss_pred EEEEEEECcCCCCCCCCCC------------------------------------------CCcEEEEEECCeeccceee
Confidence 7899999999998886654 9999999998754 35899
Q ss_pred eccCCCCCceeeEEEEeecCC-CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCCCCCCCCceEEE
Q 002960 98 VLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (862)
Q Consensus 98 vi~~t~~P~Wne~f~~~v~~~-~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~l~l 175 (862)
+++++.||+|||+|.|.+..+ ...+.|+|||.+.++ +++||++.+++.+.... ..|+...-+...+ ..|.++.
T Consensus 40 ~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~~---~~~~~~~~~~~~~--~~~~~~~ 114 (124)
T cd04037 40 YIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRFFS---KHRATCGLPPTYE--ESGPNQW 114 (124)
T ss_pred EEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeecccccc---hHHHhccCCCccc--ccCceec
Confidence 999999999999999998655 467899999999986 89999999999876532 2444443332222 3566666
Q ss_pred Eeeeec
Q 002960 176 ELKFTP 181 (862)
Q Consensus 176 ~l~~~~ 181 (862)
+..+.|
T Consensus 115 ~~~~~~ 120 (124)
T cd04037 115 RDSLKP 120 (124)
T ss_pred CcccCc
Confidence 555544
No 110
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.39 E-value=1.6e-12 Score=122.61 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=69.9
Q ss_pred CCcEEEEEECCe------EEEeeeeccCCCCCceeeEEEEeecC-CCceEEEEEEecCC----CC-CeeeEEEEEeceee
Q 002960 80 SDPYVTVVVPQA------TVARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDV----FG-AQIIGTAAIPAHTI 147 (862)
Q Consensus 80 ~dpYv~v~l~~~------~~~rT~vi~~t~~P~Wne~f~~~v~~-~~~~l~~~v~d~d~----~~-~~~iG~~~i~l~~l 147 (862)
+||||+|.+.+. .++||++++++.||+|||+|.|.+.. ....+.|+|||.+. ++ +++||++.+++.++
T Consensus 21 ~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l 100 (120)
T cd04048 21 SDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI 100 (120)
T ss_pred CCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHH
Confidence 899999999553 36899999999999999999998643 45678999999996 55 89999999999999
Q ss_pred ccCceeEEEEEc
Q 002960 148 ATGELISRWYDI 159 (862)
Q Consensus 148 ~~g~~~~~w~~l 159 (862)
..++....|++|
T Consensus 101 ~~~~~~~~~~~l 112 (120)
T cd04048 101 VSSPGQKLTLPL 112 (120)
T ss_pred hcCCCcEEEEEc
Confidence 988778889998
No 111
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.36 E-value=4e-12 Score=120.44 Aligned_cols=102 Identities=28% Similarity=0.403 Sum_probs=83.4
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC----C
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----Q 90 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~----~ 90 (862)
..+.|.|+|++|++|+..+..+. +||||++.+. .
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~ 50 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGL------------------------------------------SDPYVKLNLLPGASK 50 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCceEEEEEecCCCC
Confidence 34689999999999998776544 8999999982 2
Q ss_pred eEEEeeeeccCCCCCceeeEEEEeecCC----CceEEEEEEecCCCCCeeeEEEEEeceeeccCceeEEEEE
Q 002960 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYD 158 (862)
Q Consensus 91 ~~~~rT~vi~~t~~P~Wne~f~~~v~~~----~~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~ 158 (862)
..+.||++++++.||+|||+|.|..... ...+.|+|||.+.+++++||.+.+++.++..++..+.|+.
T Consensus 51 ~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 51 ATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred CCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeecc
Confidence 3467999999999999999999963322 3578999999988788999999999999987766555543
No 112
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.35 E-value=2.1e-12 Score=165.00 Aligned_cols=120 Identities=22% Similarity=0.448 Sum_probs=102.2
Q ss_pred eeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEE
Q 002960 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (862)
Q Consensus 14 ~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~ 93 (862)
.+.|.|.|+|++|+||. +.++. +||||.+.++++..
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~------------------------------------------sdPyv~l~~g~~~~ 2012 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGN------------------------------------------TNAFCKLTLGNGPP 2012 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCC------------------------------------------CCCeEEEEECCCCc
Confidence 57899999999999997 22333 89999999997644
Q ss_pred EeeeeccCCCCCceeeEEEEeecCCC--ceEEEEEEecCCCCCeeeEEEEEeceeeccCceeEEEEEccCCCCCCCCCCc
Q 002960 94 ARTRVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGA 171 (862)
Q Consensus 94 ~rT~vi~~t~~P~Wne~f~~~v~~~~--~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g 171 (862)
.||+|++++.||+|||.|+|.+..+. ..+.|+|||+|.++++.||.+.|++.++..+..+..||+|.+ .|+ ..|
T Consensus 2013 ~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~-~~~---k~G 2088 (2102)
T PLN03200 2013 RQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNP-ESN---KDG 2088 (2102)
T ss_pred ccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecCc-ccc---cCC
Confidence 59999999999999999998887764 669999999999998899999999999998989999999953 332 246
Q ss_pred e---EEEEeeeec
Q 002960 172 S---IQLELKFTP 181 (862)
Q Consensus 172 ~---l~l~l~~~~ 181 (862)
+ |++.+++.+
T Consensus 2089 ~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2089 SSRTLEIEFQWSN 2101 (2102)
T ss_pred CcceEEEEEEecC
Confidence 6 999988765
No 113
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.34 E-value=1.7e-12 Score=146.94 Aligned_cols=130 Identities=25% Similarity=0.333 Sum_probs=113.9
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEee
Q 002960 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (862)
Q Consensus 17 g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT 96 (862)
..|.|+|.+|+|||+.+..+. +||||+|.++++.+.||
T Consensus 5 ~sl~vki~E~knL~~~~~~g~------------------------------------------~D~yC~v~lD~E~v~RT 42 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGM------------------------------------------RDCYCTVNLDQEEVCRT 42 (800)
T ss_pred cceeEEEeecccCCCCCCCCC------------------------------------------cCcceEEeecchhhhhh
Confidence 568999999999999877765 89999999999999999
Q ss_pred eeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCCCCCCCCceEEE
Q 002960 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (862)
Q Consensus 97 ~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~l~l 175 (862)
.++.+++.|.|.|.|.|+++.....+.|.|||.| ++ |+.||++.|.-++|...+..+.||.|..- ....+..|+|++
T Consensus 43 ~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~~V-D~dsEVQG~v~l 120 (800)
T KOG2059|consen 43 ATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPV-DPDSEVQGKVHL 120 (800)
T ss_pred hhhhhhcCCccccceEEecCcceeeEEEEEeccc-cccccccceeeeeHHHHhhCCCCccceecccc-CCChhhceeEEE
Confidence 9999999999999999999999999999999999 66 99999999999999877788999998432 222367999999
Q ss_pred EeeeecCCCCCcccc
Q 002960 176 ELKFTPCDKNPLYRQ 190 (862)
Q Consensus 176 ~l~~~~~~~~~~~~~ 190 (862)
++++.+...+.....
T Consensus 121 ~l~~~e~~~~~~~~c 135 (800)
T KOG2059|consen 121 ELALTEAIQSSGLVC 135 (800)
T ss_pred EEEeccccCCCcchh
Confidence 999999877654333
No 114
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.31 E-value=1.9e-11 Score=123.11 Aligned_cols=131 Identities=25% Similarity=0.358 Sum_probs=91.6
Q ss_pred hhHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCc
Q 002960 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (862)
Q Consensus 559 e~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Peg~~~~~ 638 (862)
..++.+.++++|++|++.|+|+++||.+.. ......+...|.++.++ |++|+|++...+....
T Consensus 19 ~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~------------~~~~~~l~~~L~~a~~r--Gv~V~il~~~~~~~~~--- 81 (176)
T cd00138 19 GRSDLDALLEAISNAKKSIYIASFYLSPLI------------TEYGPVILDALLAAARR--GVKVRILVDEWSNTDL--- 81 (176)
T ss_pred cchHHHHHHHHHHhhheEEEEEEeEecccc------------cccchHHHHHHHHHHHC--CCEEEEEEcccccCCc---
Confidence 467899999999999999999999998531 00124677888888765 5999999986543210
Q ss_pred chhhhhHhHHHHHHHHHHHHHHHHHHc---CcCCCCCCcEEEeeCCCcCCCCcccccCCCCcccccccccceeeEEEeEE
Q 002960 639 TVQEILFWQSQTMQMMYSVVAQELREM---QVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKG 715 (862)
Q Consensus 639 ~~~~~~~~~~~t~~~~~~~i~~~L~~~---gv~~~p~~yl~~y~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKl 715 (862)
.. .. .....|.+. |++ ++.+.... .....+|+|+
T Consensus 82 ------~~-~~-------~~~~~l~~~~~~~i~--------~~~~~~~~---------------------~~~~~~H~K~ 118 (176)
T cd00138 82 ------KI-SS-------AYLDSLRALLDIGVR--------VFLIRTDK---------------------TYGGVLHTKL 118 (176)
T ss_pred ------hH-HH-------HHHHHHHHhhcCceE--------EEEEcCCc---------------------ccccceeeeE
Confidence 00 01 123444443 332 23221100 0135899999
Q ss_pred EEEeeeEEEecCcCccccccCCCCCcceEEEeeCCc
Q 002960 716 MIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPH 751 (862)
Q Consensus 716 mIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~ 751 (862)
||||++.+++||+|++.+|+. .+.|+++.+.+|.
T Consensus 119 ~iiD~~~~~vGS~N~~~~~~~--~~~e~~~~~~~~~ 152 (176)
T cd00138 119 VIVDDETAYIGSANLDGRSLT--LNSEVGVVIYDPA 152 (176)
T ss_pred EEEcCCEEEEECCcCChhhhh--hhcceEEEEeChH
Confidence 999999999999999999998 4599999998874
No 115
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.31 E-value=1e-11 Score=139.55 Aligned_cols=142 Identities=19% Similarity=0.198 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHH-HcCCEEEEEEeCCCCcccccccccCC
Q 002960 243 CWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKS-EEGVRVLLLVWDDKTSHDKLGVKTPG 321 (862)
Q Consensus 243 ~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA-~rGV~VriLvwd~~~s~~~~~~~~~~ 321 (862)
..++++++|.+||++|+|+.+.|.|... ... .......|.++|.+|| +|||+||||+ +..+....
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P~~~---~d~---~~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~------- 282 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVPVIR---EDD---KTTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDV------- 282 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEeccccEEe---eCC---CCccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCc-------
Confidence 4688999999999999999998877531 110 0001258899998875 9999999998 76432110
Q ss_pred cccCCcHHHHhhhcCCCce----EEecCCCCCCccccccccccccccccccceEEeccCCCCCCcceEEEEccccccCcc
Q 002960 322 VMATHDEETKKFFKHSSVN----CVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (862)
Q Consensus 322 ~~~~~~~~~~~~l~~~~v~----v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R 397 (862)
......+.|...|++ +.++ .+.+|+|++|||++ +||+||.|+.+..
T Consensus 283 ----~~~~~~~~L~~~G~~~~i~vri~------------------~~~~H~K~~VVD~~--------~a~iGS~N~d~~s 332 (369)
T PHA03003 283 ----YSMASVKSLQALCVGNDLSVKVF------------------RIPNNTKLLIVDDE--------FAHITSANFDGTH 332 (369)
T ss_pred ----hhhhHHHHHHHcCCCCCceEeee------------------cCCCCceEEEEcCC--------EEEEeccccCchh
Confidence 012344556666744 2211 11279999999998 9999999998844
Q ss_pred cCCCCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEeCHHHHHHHHHHHHHHHhh
Q 002960 398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKA 459 (862)
Q Consensus 398 ~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~ 459 (862)
+.. ..|.++ ..++|++|.++...|.++|+..
T Consensus 333 ~~~------------------------------~~e~~~-~~~~~~~a~~l~~~F~~dW~~~ 363 (369)
T PHA03003 333 YLH------------------------------HAFVSF-NTIDKELVKELSAIFERDWTSS 363 (369)
T ss_pred hcc------------------------------CCCeEE-ecCChhHHHHHHHHHHHHhCCc
Confidence 421 122232 2467999999999999999853
No 116
>PRK13912 nuclease NucT; Provisional
Probab=99.31 E-value=2.4e-11 Score=122.56 Aligned_cols=127 Identities=19% Similarity=0.270 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCcc
Q 002960 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (862)
Q Consensus 560 ~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Peg~~~~~~ 639 (862)
..+...++++|++|++.|+|+. |+.+. ..+..+|.+|.+ +||+|+|+++........
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~-Y~~~~-----------------~~i~~aL~~Aa~--RGV~VrIlld~~~~~~~~--- 88 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAI-YSFTH-----------------KDIAKALKSAAK--RGVKISIIYDYESNHNND--- 88 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEE-EEEch-----------------HHHHHHHHHHHH--CCCEEEEEEeCccccCcc---
Confidence 4667899999999999999996 44421 357778877765 559999999864321100
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHH-cCcCCCCCCcEEEe-eCCCcCCCCcccccCCCCcccccccccceeeEEEeEEEE
Q 002960 640 VQEILFWQSQTMQMMYSVVAQELRE-MQVDAHPQDYLSFY-CLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMI 717 (862)
Q Consensus 640 ~~~~~~~~~~t~~~~~~~i~~~L~~-~gv~~~p~~yl~~y-~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmI 717 (862)
..+ ...|.+ .++++ ..+ .+... ......++|+|+||
T Consensus 89 --------~~~--------~~~l~~~~~~~~------~~~~~~~~~--------------------~~~~~~~~H~K~~v 126 (177)
T PRK13912 89 --------QST--------IGYLDKYPNIKV------CLLKGLKAK--------------------NGKYYGIMHQKVAI 126 (177)
T ss_pred --------hhH--------HHHHHhCCCceE------EEecCcccc--------------------CcccccccceeEEE
Confidence 011 011111 12211 011 00000 00012468999999
Q ss_pred EeeeEEEecCcCccccccCCCCCcceEEEeeCCccc
Q 002960 718 VDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (862)
Q Consensus 718 VDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 753 (862)
||++++++||+||+.+|+.. +.|+++.+.||+.+
T Consensus 127 iD~~~~~iGS~N~t~~s~~~--N~E~~lii~d~~~~ 160 (177)
T PRK13912 127 IDDKIVVLGSANWSKNAFEN--NYEVLLITDDTETI 160 (177)
T ss_pred EcCCEEEEeCCCCChhHhcc--CCceEEEECCHHHH
Confidence 99999999999999999985 59999999888544
No 117
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.28 E-value=1.1e-11 Score=144.63 Aligned_cols=139 Identities=16% Similarity=0.164 Sum_probs=106.0
Q ss_pred chHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCcccccccccC
Q 002960 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (862)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~~~~ 320 (862)
..+++.+.++|.+||++|+|+...|.|+ ..+.++|+.||+|||+|+||+ +.......
T Consensus 343 ~~i~~~~l~~I~~A~~~I~I~tpYf~pd----------------~~l~~aL~~Aa~rGV~Vrii~-p~~~D~~~------ 399 (509)
T PRK12452 343 KSIRNTLLAVMGSAKKSIWIATPYFIPD----------------QETLTLLRLSAISGIDVRILY-PGKSDSII------ 399 (509)
T ss_pred HHHHHHHHHHHHHhhhEEEEECCccCCC----------------HHHHHHHHHHHHcCCEEEEEc-CCCCChHH------
Confidence 4779999999999999999998666553 588999999999999999998 65421110
Q ss_pred CcccCCcHHHHhhhcCCCceEEecCCCCCCccccccccccccccccccceEEeccCCCCCCcceEEEEccccccCcccCC
Q 002960 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (862)
Q Consensus 321 ~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt 400 (862)
.........+.|...||++..+.. ...|.|++|||++ +++|||.|++...+.
T Consensus 400 --~~~a~~~~~~~L~~aGv~I~~y~~-----------------~~lHaK~~ivD~~--------~a~vGS~Nld~RS~~- 451 (509)
T PRK12452 400 --SDQASQSYFTPLLKAGASIYSYKD-----------------GFMHAKIVLVDDK--------IATIGTANMDVRSFE- 451 (509)
T ss_pred --HHHHHHHHHHHHHHcCCEEEEecC-----------------CCeeeeEEEECCC--------EEEEeCcccCHhHhh-
Confidence 000012334567778999875421 1389999999998 999999999883331
Q ss_pred CCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEeCHHHHHHHHHHHHHHHhhc
Q 002960 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKAT 460 (862)
Q Consensus 401 ~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~ 460 (862)
..|.+..+...++.|.++.+.|.++|..+.
T Consensus 452 ------------------------------~n~E~~~~i~~~~~~~~l~~~f~~d~~~s~ 481 (509)
T PRK12452 452 ------------------------------LNYEIISVLYESETVHDIKRDFEDDFKHST 481 (509)
T ss_pred ------------------------------hhhhccEEEECHHHHHHHHHHHHHHHHhCe
Confidence 345677888888999999999999998754
No 118
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.22 E-value=4.3e-11 Score=113.49 Aligned_cols=113 Identities=22% Similarity=0.343 Sum_probs=72.1
Q ss_pred HHHHHHhccceEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCcchhhhhH
Q 002960 566 YIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILF 645 (862)
Q Consensus 566 y~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Peg~~~~~~~~~~~~ 645 (862)
++++|.+|++.|+|+.+||... .+...+..+.+ ++++|+|++...... ... ..
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~~------------------~i~~~l~~~~~--~gv~v~ii~~~~~~~-~~~------~~ 53 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITDP------------------DIIKALLDAAK--RGVKVRIIVDSNQDD-SEA------IN 53 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-SC------------------HHHHHHHHHHH--TT-EEEEEEECGGGH-HCC------CS
T ss_pred CHHHHhccCCEEEEEEEecCcH------------------HHHHHHHHHHH--CCCeEEEEECCCccc-cch------hh
Confidence 3689999999999999999532 34556655544 559999999853210 000 00
Q ss_pred hHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEeeCCCcCCCCcccccCCCCcccccccccceeeEEEeEEEEEeeeEEEe
Q 002960 646 WQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIM 725 (862)
Q Consensus 646 ~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iI 725 (862)
.. ....+.+.+...|+++ + .++|+|++|+||+++++
T Consensus 54 --~~----~~~~~~~~~~~~~i~v--------~------------------------------~~~H~K~~i~d~~~~ii 89 (126)
T PF13091_consen 54 --LA----SLKELRELLKNAGIEV--------R------------------------------NRLHAKFYIIDDKVAII 89 (126)
T ss_dssp --HH----HHHHHHHHHHHTTHCE--------E------------------------------S-B--EEEEETTTEEEE
T ss_pred --hH----HHHHHHhhhccceEEE--------e------------------------------cCCCcceEEecCccEEE
Confidence 01 1122344556667643 1 27899999999999999
Q ss_pred cCcCccccccCCCCCcceEEEeeCCc
Q 002960 726 GSANINQRSMAGSKDTEIAMGSYQPH 751 (862)
Q Consensus 726 GSANln~RSm~g~~DsEi~v~i~d~~ 751 (862)
||+|++.+|+. ++.|+++.+.+++
T Consensus 90 GS~N~t~~~~~--~n~E~~~~~~~~~ 113 (126)
T PF13091_consen 90 GSANLTSSSFR--RNYELGVIIDDPE 113 (126)
T ss_dssp ES--CSCCCSC--TSEEEEEEEECHH
T ss_pred cCCCCCcchhc--CCcceEEEEECHH
Confidence 99999999997 4599999998874
No 119
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.21 E-value=6.5e-11 Score=109.78 Aligned_cols=70 Identities=33% Similarity=0.554 Sum_probs=59.7
Q ss_pred CCcEEEEEECCe-----EEEeeeeccCCCCCceeeEEEEeecCC-----CceEEEEEEecCCCC-CeeeEEEEEeceeec
Q 002960 80 SDPYVTVVVPQA-----TVARTRVLKNSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (862)
Q Consensus 80 ~dpYv~v~l~~~-----~~~rT~vi~~t~~P~Wne~f~~~v~~~-----~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~ 148 (862)
+||||+|.+.+. .+.||++++++.||+|| +|.|++... ...|.|+|||++.++ +++||++.+++.++.
T Consensus 21 ~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 21 SDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELL 99 (110)
T ss_pred CCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHh
Confidence 999999998432 46899999999999999 788885432 467999999999997 899999999999988
Q ss_pred cC
Q 002960 149 TG 150 (862)
Q Consensus 149 ~g 150 (862)
.+
T Consensus 100 ~~ 101 (110)
T cd04047 100 KS 101 (110)
T ss_pred cC
Confidence 44
No 120
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.14 E-value=1.1e-10 Score=101.90 Aligned_cols=81 Identities=43% Similarity=0.728 Sum_probs=69.6
Q ss_pred EEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe--EEEee
Q 002960 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA--TVART 96 (862)
Q Consensus 19 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~--~~~rT 96 (862)
|+|+|++|++|+..+..+. .+|||++.+.+. ...+|
T Consensus 1 L~v~I~~a~~L~~~~~~~~------------------------------------------~~~yv~v~~~~~~~~~~~T 38 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGK------------------------------------------PDPYVRVSVNGSESTKYKT 38 (85)
T ss_dssp EEEEEEEEESSSSSSTTSS------------------------------------------BEEEEEEEEETTTCEEEEE
T ss_pred CEEEEEEEECCCCcccCCc------------------------------------------ccccceeecceeeeeeeee
Confidence 7899999999997665444 899999999663 34799
Q ss_pred eeccCCCCCceeeEEEEeecC-CCceEEEEEEecCCCC-CeeeEEEE
Q 002960 97 RVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAA 141 (862)
Q Consensus 97 ~vi~~t~~P~Wne~f~~~v~~-~~~~l~~~v~d~d~~~-~~~iG~~~ 141 (862)
++++++.+|.|+|+|.|.+.. ....|.|+|||.+..+ +++||++.
T Consensus 39 ~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 39 KVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp CCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred eeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence 999999999999999999654 4566999999999999 89999974
No 121
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=6.9e-11 Score=131.46 Aligned_cols=118 Identities=26% Similarity=0.514 Sum_probs=96.9
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEE
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~ 94 (862)
+...+++++.+|++|...|..|+ +||||++.+++.+.
T Consensus 293 wsakitltvlcaqgl~akdktg~------------------------------------------sdpyvt~qv~ktkr- 329 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGK------------------------------------------SDPYVTAQVGKTKR- 329 (1283)
T ss_pred cceeeEEeeeecccceecccCCC------------------------------------------CCCcEEEeecccch-
Confidence 34568999999999998887665 99999999998774
Q ss_pred eeeeccCCCCCceeeEEEEeecCCCceEEEEEEecCCC------------CCeeeEEEEEeceeeccCceeEEEEEccCC
Q 002960 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF------------GAQIIGTAAIPAHTIATGELISRWYDIIAP 162 (862)
Q Consensus 95 rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~------------~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~ 162 (862)
||++|...+||+|||.|+|.|......|.+.|||+|.- +|+|+|+..|-+..+. | +.+.||.|-..
T Consensus 330 rtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrqkl~resddflgqtvievrtls-g-emdvwynlekr 407 (1283)
T KOG1011|consen 330 RTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS-G-EMDVWYNLEKR 407 (1283)
T ss_pred hhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecc-c-chhhhcchhhc
Confidence 99999999999999999999999999999999998742 4899999999888766 4 35789999444
Q ss_pred CCCCCCCCceEEEEee
Q 002960 163 SGSPPKPGASIQLELK 178 (862)
Q Consensus 163 ~~~~~~~~g~l~l~l~ 178 (862)
..+. ...|.|++.+.
T Consensus 408 tdks-avsgairlhis 422 (1283)
T KOG1011|consen 408 TDKS-AVSGAIRLHIS 422 (1283)
T ss_pred cchh-hccceEEEEEE
Confidence 3333 45676666554
No 122
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.10 E-value=7.2e-10 Score=105.06 Aligned_cols=124 Identities=20% Similarity=0.374 Sum_probs=84.9
Q ss_pred HHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCcccccccccCCccc-C
Q 002960 247 ICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMA-T 325 (862)
Q Consensus 247 l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~~~~~~~~-~ 325 (862)
|.++|++|+++|+|+.+.|.+ ..+.+.|..++++||+|+|++ +...... +.+. .
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~-----------------~~i~~~l~~~~~~gv~v~ii~-~~~~~~~-------~~~~~~ 55 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITD-----------------PDIIKALLDAAKRGVKVRIIV-DSNQDDS-------EAINLA 55 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-S-----------------CHHHHHHHHHHHTT-EEEEEE-ECGGGHH-------CCCSHH
T ss_pred CHHHHhccCCEEEEEEEecCc-----------------HHHHHHHHHHHHCCCeEEEEE-CCCcccc-------chhhhH
Confidence 578999999999999887732 478888888999999999998 4421100 0000 0
Q ss_pred CcHHHHhhhcCCCceEEecCCCCCCccccccccccccccccccceEEeccCCCCCCcceEEEEccccccCcccCCCCccc
Q 002960 326 HDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRL 405 (862)
Q Consensus 326 ~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt~~H~l 405 (862)
......+.+...++++. .+.|.|++|||++ ++++|+.|++...|
T Consensus 56 ~~~~~~~~~~~~~i~v~---------------------~~~H~K~~i~d~~--------~~iiGS~N~t~~~~------- 99 (126)
T PF13091_consen 56 SLKELRELLKNAGIEVR---------------------NRLHAKFYIIDDK--------VAIIGSANLTSSSF------- 99 (126)
T ss_dssp HHHHHHHHHHHTTHCEE---------------------S-B--EEEEETTT--------EEEEES--CSCCCS-------
T ss_pred HHHHHHhhhccceEEEe---------------------cCCCcceEEecCc--------cEEEcCCCCCcchh-------
Confidence 01123444466777765 1489999999987 99999999999655
Q ss_pred ccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEeCHH-HHHHHHHHHHHH
Q 002960 406 FRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA-AYDVLINFEQRW 456 (862)
Q Consensus 406 ~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gpa-a~dl~~~F~~rW 456 (862)
.-.++..+.+.+|. +..+.+.|.+.|
T Consensus 100 -------------------------~~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 100 -------------------------RRNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp -------------------------CTSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred -------------------------cCCcceEEEEECHHHHHHHHHHHhccC
Confidence 13458999999995 899999999889
No 123
>PLN02223 phosphoinositide phospholipase C
Probab=99.09 E-value=9.3e-10 Score=125.30 Aligned_cols=96 Identities=23% Similarity=0.432 Sum_probs=81.4
Q ss_pred CCcEEEEEECC----eEEEeeeeccCCCCCceeeEEEEeecCCC-ceEEEEEEecCCCC-CeeeEEEEEeceeeccCcee
Q 002960 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (862)
Q Consensus 80 ~dpYv~v~l~~----~~~~rT~vi~~t~~P~Wne~f~~~v~~~~-~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~ 153 (862)
.||||+|.+.+ ....||+|..|+.||+|||+|.|.+..+. .-|.|+|+|.|..+ ++|+|++.+|+..|..|.
T Consensus 435 ~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy-- 512 (537)
T PLN02223 435 PDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI-- 512 (537)
T ss_pred CCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc--
Confidence 79999999943 33458888888999999999999987775 45799999999876 899999999999999996
Q ss_pred EEEEEccCCCCCCCCCCceEEEEeee
Q 002960 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (862)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~l~l~l~~ 179 (862)
++++|++..|++.. ..+|.+++.|
T Consensus 513 -R~VpL~~~~g~~l~-~~~Ll~~f~~ 536 (537)
T PLN02223 513 -RAVPLYDERGKACS-STMLLTRFKW 536 (537)
T ss_pred -eeEeccCCCcCCCC-CceEEEEEEe
Confidence 78899999998864 5677777765
No 124
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.07 E-value=7.1e-10 Score=98.91 Aligned_cols=80 Identities=34% Similarity=0.646 Sum_probs=70.8
Q ss_pred CCcEEEEEECCeEEEeeeeccCCCCCceeeEEEEeecC-CCceEEEEEEecCCCC-CeeeEEEEEeceeec-cCceeEEE
Q 002960 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-TGELISRW 156 (862)
Q Consensus 80 ~dpYv~v~l~~~~~~rT~vi~~t~~P~Wne~f~~~v~~-~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~-~g~~~~~w 156 (862)
.+|||++.+.+...+||+++.++.||.|||.|.|.+.. ....+.|+|++.+..+ ..+||.+.+++.++. .......|
T Consensus 20 ~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~ 99 (102)
T cd00030 20 SDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELW 99 (102)
T ss_pred CCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcce
Confidence 89999999988556799999999999999999999988 6678999999998887 899999999999987 66667788
Q ss_pred EEc
Q 002960 157 YDI 159 (862)
Q Consensus 157 ~~l 159 (862)
++|
T Consensus 100 ~~l 102 (102)
T cd00030 100 LPL 102 (102)
T ss_pred ecC
Confidence 775
No 125
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.05 E-value=6.7e-10 Score=132.84 Aligned_cols=127 Identities=27% Similarity=0.456 Sum_probs=102.6
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEee
Q 002960 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (862)
Q Consensus 17 g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT 96 (862)
|.|.|+|.+|++|...+..-. .+.|||+++...+.-.+||
T Consensus 436 GVv~vkI~sa~~lk~~d~~i~----------------------------------------~~vDpyit~~~~~r~~gkT 475 (1227)
T COG5038 436 GVVEVKIKSAEGLKKSDSTIN----------------------------------------GTVDPYITVTFSDRVIGKT 475 (1227)
T ss_pred EEEEEEEeeccCccccccccc----------------------------------------CCCCceEEEEeccccCCcc
Confidence 999999999999986652111 0289999999988888899
Q ss_pred eeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEE-EEEccCCCCCCCCCCceEE
Q 002960 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR-WYDIIAPSGSPPKPGASIQ 174 (862)
Q Consensus 97 ~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~-w~~l~~~~~~~~~~~g~l~ 174 (862)
++.+++.||+|||+|.+.+......|.++|||.+.+. |+++|++.++|..+...+.+.. -+.++ .++ +..|+|.
T Consensus 476 ~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~-~~~---k~vGrL~ 551 (1227)
T COG5038 476 RVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL-RNT---KNVGRLT 551 (1227)
T ss_pred ceeeccCCccccceEEEEecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-ccC---ccceEEE
Confidence 9999999999999999999988999999999966555 9999999999988775444333 34442 233 4689999
Q ss_pred EEeeeecCCCCCc
Q 002960 175 LELKFTPCDKNPL 187 (862)
Q Consensus 175 l~l~~~~~~~~~~ 187 (862)
..++|+|+..+..
T Consensus 552 yDl~ffp~~e~k~ 564 (1227)
T COG5038 552 YDLRFFPVIEDKK 564 (1227)
T ss_pred EeeeeecccCCcc
Confidence 9999999876643
No 126
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.04 E-value=1.1e-09 Score=98.12 Aligned_cols=73 Identities=42% Similarity=0.754 Sum_probs=65.2
Q ss_pred CCcEEEEEECCe--EEEeeeeccCCCCCceeeEEEEeecCC-CceEEEEEEecCCCC-CeeeEEEEEeceeeccCce
Q 002960 80 SDPYVTVVVPQA--TVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (862)
Q Consensus 80 ~dpYv~v~l~~~--~~~rT~vi~~t~~P~Wne~f~~~v~~~-~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~ 152 (862)
.+|||++.+... ...+|+++.++.+|.|||+|.|++... ...|.|+|||.+..+ +.++|.+.+++.++..+..
T Consensus 21 ~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 21 SDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred CCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCcc
Confidence 799999999775 568999999999999999999999988 788999999998876 8999999999998876543
No 127
>PLN02952 phosphoinositide phospholipase C
Probab=99.00 E-value=2.9e-09 Score=123.91 Aligned_cols=96 Identities=23% Similarity=0.455 Sum_probs=80.4
Q ss_pred CCcEEEEEECC----eEEEeeeeccCCCCCceeeEEEEeecCCC-ceEEEEEEecCCCC-CeeeEEEEEeceeeccCcee
Q 002960 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (862)
Q Consensus 80 ~dpYv~v~l~~----~~~~rT~vi~~t~~P~Wne~f~~~v~~~~-~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~ 153 (862)
.||||+|.+-+ ....||+++.++.||+|||+|.|++..+. .-+.|+|+|.|..+ ++++|++.||+..|..|.
T Consensus 497 ~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy-- 574 (599)
T PLN02952 497 PDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI-- 574 (599)
T ss_pred CCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc--
Confidence 69999999843 34459999999999999999999987764 55799999999877 899999999999999996
Q ss_pred EEEEEccCCCCCCCCCCceEEEEeee
Q 002960 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (862)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~l~l~l~~ 179 (862)
+|++|.+..|++.. ...|.+.+.|
T Consensus 575 -R~VpL~~~~G~~l~-~a~Llv~f~~ 598 (599)
T PLN02952 575 -RSVPLHDKKGEKLK-NVRLLMRFIF 598 (599)
T ss_pred -eeEeCcCCCCCCCC-CEEEEEEEEe
Confidence 69999999998754 4566666655
No 128
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=98.97 E-value=2.4e-09 Score=124.72 Aligned_cols=138 Identities=19% Similarity=0.121 Sum_probs=100.9
Q ss_pred chHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCcccccccccC
Q 002960 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (862)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~~~~ 320 (862)
..+.+.+.++|.+||++|+|+.-.|-|+ ..+.++|+.||+|||+|+|++ +.......
T Consensus 317 ~~~~~~~~~~I~~A~~~I~I~tpYfip~----------------~~i~~aL~~Aa~rGV~Vril~-p~~~d~~~------ 373 (483)
T PRK01642 317 ETIHQFLLTAIYSARERLWITTPYFVPD----------------EDLLAALKTAALRGVDVRIII-PSKNDSLL------ 373 (483)
T ss_pred hHHHHHHHHHHHHhccEEEEEcCCcCCC----------------HHHHHHHHHHHHcCCEEEEEe-CCCCCcHH------
Confidence 4567789999999999999997545443 589999999999999999998 54321110
Q ss_pred CcccCCcHHHHhhhcCCCceEEecCCCCCCccccccccccccccccccceEEeccCCCCCCcceEEEEccccccCcccCC
Q 002960 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (862)
Q Consensus 321 ~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt 400 (862)
.........+.|...||++..+.. ...|.|++|||++ +++||+.|++...+.
T Consensus 374 --~~~~~~~~~~~L~~~Gv~I~~y~~-----------------~~~HaK~~ivD~~--------~~~vGS~N~d~rS~~- 425 (483)
T PRK01642 374 --VFWASRAFFTELLEAGVKIYRYEG-----------------GLLHTKSVLVDDE--------LALVGTVNLDMRSFW- 425 (483)
T ss_pred --HHHHHHHHHHHHHHcCCEEEEeCC-----------------CceEeEEEEECCC--------EEEeeCCcCCHhHHh-
Confidence 000012234456678999875321 1279999999998 999999999773331
Q ss_pred CCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEeCH-HHHHHHHHHHHHHHhhc
Q 002960 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKAT 460 (862)
Q Consensus 401 ~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gp-aa~dl~~~F~~rW~~~~ 460 (862)
--+++.+.+.++ .+.++.+.|.++|..+.
T Consensus 426 -------------------------------~N~E~~~~i~d~~~~~~l~~~f~~d~~~s~ 455 (483)
T PRK01642 426 -------------------------------LNFEITLVIDDTGFAADLAAMQEDYFARSR 455 (483)
T ss_pred -------------------------------hhhcceEEEECHHHHHHHHHHHHHHHHhCe
Confidence 124788999998 57999999999997654
No 129
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=4.9e-10 Score=127.44 Aligned_cols=116 Identities=30% Similarity=0.498 Sum_probs=92.8
Q ss_pred CCCceeEeeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEE
Q 002960 7 SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTV 86 (862)
Q Consensus 7 ~~~~~~~~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v 86 (862)
--++.+..-+|.|+|.|++|++|+.++..+. +||||++
T Consensus 288 ~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~------------------------------------------~d~~Vk~ 325 (421)
T KOG1028|consen 288 LLSLCYLPTAGRLTVVVIKARNLKSMDVGGL------------------------------------------SDPYVKV 325 (421)
T ss_pred EEEEEeecCCCeEEEEEEEecCCCcccCCCC------------------------------------------CCccEEE
Confidence 3455566678999999999999999887665 8999999
Q ss_pred EE--CC--eEEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEE
Q 002960 87 VV--PQ--ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD 158 (862)
Q Consensus 87 ~l--~~--~~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~ 158 (862)
.+ +. .+..+|.+.+++.||+|||+|.|.|... ...+.|+|||.|.++ +++||.+.+.... .+.....|.+
T Consensus 326 ~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~ 403 (421)
T KOG1028|consen 326 TLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQE 403 (421)
T ss_pred EEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHH
Confidence 98 22 3556999999999999999999988755 346899999999999 7899998887664 4555667777
Q ss_pred ccCCCCCC
Q 002960 159 IIAPSGSP 166 (862)
Q Consensus 159 l~~~~~~~ 166 (862)
++...+++
T Consensus 404 m~~~p~~p 411 (421)
T KOG1028|consen 404 MLNSPRKP 411 (421)
T ss_pred HHhCccCc
Confidence 76655544
No 130
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.94 E-value=5.8e-09 Score=121.18 Aligned_cols=96 Identities=22% Similarity=0.449 Sum_probs=81.5
Q ss_pred CCcEEEEEECC----eEEEeeeeccCCCCCceeeEEEEeecCCC-ceEEEEEEecCCCC-CeeeEEEEEeceeeccCcee
Q 002960 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (862)
Q Consensus 80 ~dpYv~v~l~~----~~~~rT~vi~~t~~P~Wne~f~~~v~~~~-~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~ 153 (862)
.||||+|.+-+ ....||+|..|+.||+|||+|.|++.-+. .-|.|+|+|+|..+ ++|+|+..||+..|..|-
T Consensus 496 ~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy-- 573 (598)
T PLN02230 496 PDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI-- 573 (598)
T ss_pred CCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc--
Confidence 79999999932 33459999999999999999999987664 56799999999865 899999999999999886
Q ss_pred EEEEEccCCCCCCCCCCceEEEEeee
Q 002960 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (862)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~l~l~l~~ 179 (862)
+.++|++..|.+.. ..+|.+++.|
T Consensus 574 -R~V~L~~~~G~~l~-~~~Ll~~f~~ 597 (598)
T PLN02230 574 -HAVPLFNRKGVKYS-STRLLMRFEF 597 (598)
T ss_pred -ceEeccCCCcCCCC-CCeeEEEEEe
Confidence 67899999998864 5688888776
No 131
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.89 E-value=1.4e-08 Score=117.96 Aligned_cols=96 Identities=23% Similarity=0.476 Sum_probs=81.8
Q ss_pred CCcEEEEEECC----eEEEeeeeccCCCCCceeeEEEEeecCCC-ceEEEEEEecCCCC-CeeeEEEEEeceeeccCcee
Q 002960 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (862)
Q Consensus 80 ~dpYv~v~l~~----~~~~rT~vi~~t~~P~Wne~f~~~v~~~~-~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~ 153 (862)
.||||+|.+.+ ....||+++.++.||+|||+|.|.+..+. .-|.|+|+|.|..+ +++||+..||+..|..|-
T Consensus 479 ~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy-- 556 (581)
T PLN02222 479 PDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI-- 556 (581)
T ss_pred CCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc--
Confidence 79999999943 34469999999999999999999987664 56799999998766 899999999999999886
Q ss_pred EEEEEccCCCCCCCCCCceEEEEeee
Q 002960 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (862)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~l~l~l~~ 179 (862)
+.++|++..|.+.. ...|.+.+.|
T Consensus 557 -R~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 557 -RAFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred -ceEEccCCCcCCCC-CeeEEEEEEe
Confidence 67899999998864 5688887776
No 132
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.88 E-value=5.3e-09 Score=115.54 Aligned_cols=132 Identities=29% Similarity=0.496 Sum_probs=105.7
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEE
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~ 94 (862)
|.|.|.|+|..|++||.||..+. ..|.||+|.++... .
T Consensus 1 mpgkl~vki~a~r~lpvmdkasd-----------------------------------------~tdafveik~~n~t-~ 38 (1169)
T KOG1031|consen 1 MPGKLGVKIKAARHLPVMDKASD-----------------------------------------LTDAFVEIKFANTT-F 38 (1169)
T ss_pred CCCcceeEEEeccCCcccccccc-----------------------------------------cchheeEEEecccc-e
Confidence 56899999999999999997765 27999999999977 5
Q ss_pred eeeeccCCCCCcee-eEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeecc----------CceeEEEEEc
Q 002960 95 RTRVLKNSQEPVWN-EHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT----------GELISRWYDI 159 (862)
Q Consensus 95 rT~vi~~t~~P~Wn-e~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~----------g~~~~~w~~l 159 (862)
||.|..+++||.|| +-|.|.+.+. ...+.+++.|+|..+ ++-||++.|.+..+.- |..+.+|||+
T Consensus 39 ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pi 118 (1169)
T KOG1031|consen 39 KTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPI 118 (1169)
T ss_pred ehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeec
Confidence 99999999999999 8889998765 467999999999999 7999999998877642 4568999999
Q ss_pred cCCCCCCCCCCceEEEEeee---ecCCCCCccccC
Q 002960 160 IAPSGSPPKPGASIQLELKF---TPCDKNPLYRQG 191 (862)
Q Consensus 160 ~~~~~~~~~~~g~l~l~l~~---~~~~~~~~~~~g 191 (862)
++.-. .-+|+|.+-++. .+...-|.-+.|
T Consensus 119 fdtih---girgeinvivkvdlfndlnkf~qsscg 150 (1169)
T KOG1031|consen 119 FDTIH---GIRGEINVIVKVDLFNDLNKFPQSSCG 150 (1169)
T ss_pred ceecc---cccceeEEEEEEeehhhhhhccccccc
Confidence 87633 247888877763 334444443343
No 133
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.87 E-value=6.5e-10 Score=75.39 Aligned_cols=27 Identities=59% Similarity=1.015 Sum_probs=18.6
Q ss_pred ccccccceEEeccCCCCCCcceEEEEccccccCcc
Q 002960 363 IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (862)
Q Consensus 363 ~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R 397 (862)
.++||||++|||++ +||+||+|||++|
T Consensus 2 ~~~~H~K~~vvD~~--------~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 2 GGSHHQKFVVVDDR--------VAFVGGANLCDGR 28 (28)
T ss_dssp TBEE---EEEETTT--------EEEEE---SSHHH
T ss_pred CcceeeEEEEEcCC--------EEEECceecCCCC
Confidence 46899999999998 9999999999864
No 134
>PRK11263 cardiolipin synthase 2; Provisional
Probab=98.86 E-value=1.1e-08 Score=116.12 Aligned_cols=135 Identities=16% Similarity=0.103 Sum_probs=98.5
Q ss_pred chHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCcccccccccC
Q 002960 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (862)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~~~~ 320 (862)
..+...+.++|.+||++|+|+.-.|.|+ ..|.++|+.||+|||+|+||+ +..+....
T Consensus 205 ~~i~~~~~~~i~~A~~~I~I~tpYf~p~----------------~~l~~aL~~Aa~RGV~V~ii~-~~~~d~~~------ 261 (411)
T PRK11263 205 DDIERHYLKALRQARREVIIANAYFFPG----------------YRLLRALRNAARRGVRVRLIL-QGEPDMPI------ 261 (411)
T ss_pred HHHHHHHHHHHHHhceEEEEEecCcCCC----------------HHHHHHHHHHHHCCCEEEEEe-CCCCCcHH------
Confidence 3567789999999999999987444442 589999999999999999999 65432110
Q ss_pred CcccCCcHHHHhhhcCCCceEEecCCCCCCccccccccccccccccccceEEeccCCCCCCcceEEEEccccccCcccCC
Q 002960 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (862)
Q Consensus 321 ~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt 400 (862)
+....+.....|.+.||++..+.. ...|.|++|||++ +++||+.||+. |...
T Consensus 262 --~~~a~~~~~~~Ll~~Gv~I~~y~~-----------------~~lHaK~~viD~~--------~~~vGS~Nld~-rS~~ 313 (411)
T PRK11263 262 --VRVGARLLYNYLLKGGVQIYEYCR-----------------RPLHGKVALMDDH--------WATVGSSNLDP-LSLS 313 (411)
T ss_pred --HHHHHHHHHHHHHHCCCEEEEecC-----------------CCceeEEEEECCC--------EEEEeCCcCCH-HHhh
Confidence 000112345567788999763221 1379999999998 99999999987 4321
Q ss_pred CCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEeCHH-HHHHHHHHHHHHH
Q 002960 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA-AYDVLINFEQRWR 457 (862)
Q Consensus 401 ~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gpa-a~dl~~~F~~rW~ 457 (862)
--.++.+.|.+|. +..+.+.|.+.+.
T Consensus 314 -------------------------------lN~E~~~~i~d~~~a~~l~~~~~~~~~ 340 (411)
T PRK11263 314 -------------------------------LNLEANLIIRDRAFNQTLRDNLNGLIA 340 (411)
T ss_pred -------------------------------hhhhcCEEEeCHHHHHHHHHHHHHHHH
Confidence 1236778888884 6888899999986
No 135
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.86 E-value=9.4e-09 Score=119.16 Aligned_cols=98 Identities=28% Similarity=0.535 Sum_probs=83.0
Q ss_pred CCcEEEEEECC----eEEEeeeecc-CCCCCceeeEEEEeecCCC-ceEEEEEEecCCCC-CeeeEEEEEeceeeccCce
Q 002960 80 SDPYVTVVVPQ----ATVARTRVLK-NSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (862)
Q Consensus 80 ~dpYv~v~l~~----~~~~rT~vi~-~t~~P~Wne~f~~~v~~~~-~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~ 152 (862)
+||||.|.+.+ +...+|++++ |+-||.|+|+|.|++..|. .-|+|.|+|.|..+ |+|+|+..||+.+|..|-
T Consensus 641 ~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~Gy- 719 (746)
T KOG0169|consen 641 SDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGY- 719 (746)
T ss_pred CCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCce-
Confidence 89999999854 4456999555 5899999999999998875 45699999999999 999999999999999885
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEeeeec
Q 002960 153 ISRWYDIIAPSGSPPKPGASIQLELKFTP 181 (862)
Q Consensus 153 ~~~w~~l~~~~~~~~~~~g~l~l~l~~~~ 181 (862)
+-+||++..|+.+ ...+|.+.+++.+
T Consensus 720 --RhVpL~~~~G~~~-~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 720 --RHVPLLSREGEAL-SSASLFVRIAIVE 745 (746)
T ss_pred --eeeeecCCCCccc-cceeEEEEEEEec
Confidence 5689999988875 4778888888764
No 136
>PLN02228 Phosphoinositide phospholipase C
Probab=98.85 E-value=2.2e-08 Score=115.88 Aligned_cols=99 Identities=21% Similarity=0.342 Sum_probs=84.0
Q ss_pred CCcEEEEEECC----eEEEeeeeccCCCCCce-eeEEEEeecCCC-ceEEEEEEecCCCC-CeeeEEEEEeceeeccCce
Q 002960 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVW-NEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (862)
Q Consensus 80 ~dpYv~v~l~~----~~~~rT~vi~~t~~P~W-ne~f~~~v~~~~-~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~ 152 (862)
.||||+|.+.+ ....||+++.++.||+| ||+|.|++..+. .-|.|+|+|.|..+ +++||++.||+..|..|-
T Consensus 458 ~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY- 536 (567)
T PLN02228 458 PDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV- 536 (567)
T ss_pred CCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe-
Confidence 79999999843 33469999999999999 999999987764 56799999998766 899999999999999885
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEeeeecC
Q 002960 153 ISRWYDIIAPSGSPPKPGASIQLELKFTPC 182 (862)
Q Consensus 153 ~~~w~~l~~~~~~~~~~~g~l~l~l~~~~~ 182 (862)
+.++|++..|++.. .++|.+.+.+.+.
T Consensus 537 --R~VpL~~~~G~~l~-~atLfv~~~~~~~ 563 (567)
T PLN02228 537 --RAVRLHDRAGKAYK-NTRLLVSFALDPP 563 (567)
T ss_pred --eEEEccCCCCCCCC-CeEEEEEEEEcCc
Confidence 67899999998864 6789999988763
No 137
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.80 E-value=1e-08 Score=123.01 Aligned_cols=122 Identities=25% Similarity=0.403 Sum_probs=100.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEe
Q 002960 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (862)
Q Consensus 16 ~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~r 95 (862)
.|.|+|.+..|.||++.|.++. +||||.+.+.+.++.+
T Consensus 1039 sG~l~I~~~~~~nl~~~d~ng~------------------------------------------sDpfv~~~ln~k~vyk 1076 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSSDENGY------------------------------------------SDPFVKLFLNEKSVYK 1076 (1227)
T ss_pred cCcEEEEEeccCCCcccccCCC------------------------------------------CCceEEEEecceeccc
Confidence 5889999999999999888776 8999999999988999
Q ss_pred eeeccCCCCCceeeEEEEeecCCC-ceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCCCCCCCCceE
Q 002960 96 TRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASI 173 (862)
Q Consensus 96 T~vi~~t~~P~Wne~f~~~v~~~~-~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~l 173 (862)
|+++++++||+|||+|.+++.... ..+++.|+|+|.-. ++.||.+.++|+.+..+.......++ +... .....|.+
T Consensus 1077 tkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~l-dgk~-~~~~~g~~ 1154 (1227)
T COG5038 1077 TKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPL-DGKT-FIVLDGTL 1154 (1227)
T ss_pred ccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeec-cCcc-eEecccEe
Confidence 999999999999999999998654 55799999999877 89999999999999877665555555 3222 22346777
Q ss_pred EEEeeeec
Q 002960 174 QLELKFTP 181 (862)
Q Consensus 174 ~l~l~~~~ 181 (862)
+....|.+
T Consensus 1155 ~~~~~~r~ 1162 (1227)
T COG5038 1155 HPGFNFRS 1162 (1227)
T ss_pred ecceecch
Confidence 76666555
No 138
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.80 E-value=1.6e-08 Score=90.63 Aligned_cols=66 Identities=29% Similarity=0.402 Sum_probs=57.9
Q ss_pred CCcEEEEEECCeEEEeeeeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCCCeeeEEEEEeceeecc
Q 002960 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIAT 149 (862)
Q Consensus 80 ~dpYv~v~l~~~~~~rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~ 149 (862)
++|||.|.+++...+||++ +.||.|||+|.|++. ...++.|+|||...-..-.||-..+++++|..
T Consensus 23 ~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 23 PETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGGDQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred CCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCCCeecceeeehhhHHHHHH
Confidence 8999999999988889998 689999999999994 57899999999866556789999999888763
No 139
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.77 E-value=3.5e-08 Score=93.97 Aligned_cols=72 Identities=24% Similarity=0.300 Sum_probs=62.2
Q ss_pred CCcEEEEEECC--eEEEeeeeccCCCC--CceeeEEEEeecCC------------------------CceEEEEEEecCC
Q 002960 80 SDPYVTVVVPQ--ATVARTRVLKNSQE--PVWNEHFNIPLAHP------------------------LSNLEIQVKDDDV 131 (862)
Q Consensus 80 ~dpYv~v~l~~--~~~~rT~vi~~t~~--P~Wne~f~~~v~~~------------------------~~~l~~~v~d~d~ 131 (862)
+||||++.+.+ ...++|.|..+++| |.||++|.|++..+ ...+.++|||.|.
T Consensus 25 sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~ 104 (133)
T cd08374 25 SDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDK 104 (133)
T ss_pred cCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcc
Confidence 89999999965 46689999999999 99999999997661 2457999999999
Q ss_pred CC-CeeeEEEEEeceeeccCc
Q 002960 132 FG-AQIIGTAAIPAHTIATGE 151 (862)
Q Consensus 132 ~~-~~~iG~~~i~l~~l~~g~ 151 (862)
++ +++||.+.+++..+..+.
T Consensus 105 ~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 105 FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cCCCCcceEEEEEhhhccccc
Confidence 98 899999999999877554
No 140
>PRK05443 polyphosphate kinase; Provisional
Probab=98.69 E-value=7e-08 Score=115.28 Aligned_cols=119 Identities=18% Similarity=0.144 Sum_probs=89.0
Q ss_pred HHHHHHHHhccc-----eEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCc
Q 002960 564 TAYIQAIRSAQH-----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (862)
Q Consensus 564 ~ay~~~I~~A~~-----~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Peg~~~~~ 638 (862)
+.+++.|++|.+ .|.|.-..+.+. ..+..++..|+++| ++|.|+++..+-. +
T Consensus 351 ~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~-----------------s~iv~aL~~Aa~~G--k~V~vlve~karf--d-- 407 (691)
T PRK05443 351 DPVVEFLRQAAADPDVLAIKQTLYRTSKD-----------------SPIVDALIEAAENG--KQVTVLVELKARF--D-- 407 (691)
T ss_pred hHHHHHHHHhccCCCeeEEEEEEEEecCC-----------------HHHHHHHHHHHHcC--CEEEEEEccCccc--c--
Confidence 567889999999 899876555432 25667788886655 9999999964311 0
Q ss_pred chhhhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEeeCCCcCCCCcccccCCCCcccccccccceeeEEEeEEEEE
Q 002960 639 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 718 (862)
Q Consensus 639 ~~~~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIV 718 (862)
.++... ..+.|.++|+++ +|++ ....+|||+|+|
T Consensus 408 ------e~~n~~-------~~~~L~~aGv~V-------~y~~--------------------------~~~k~HaK~~li 441 (691)
T PRK05443 408 ------EEANIR-------WARRLEEAGVHV-------VYGV--------------------------VGLKTHAKLALV 441 (691)
T ss_pred ------HHHHHH-------HHHHHHHcCCEE-------EEcc--------------------------CCccceeEEEEE
Confidence 111222 478899999865 3533 135899999999
Q ss_pred eee-------EEEecCcCccccccCCCCCcceEEEeeCCccc
Q 002960 719 DDE-------YVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (862)
Q Consensus 719 DD~-------~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 753 (862)
|++ |+.|||+|+|.||...+ +|+++.+.+++.+
T Consensus 442 d~~e~~~~~~~~~iGTgN~n~~s~~~y--~D~~l~t~d~~i~ 481 (691)
T PRK05443 442 VRREGGGLRRYVHLGTGNYNPKTARLY--TDLSLLTADPEIG 481 (691)
T ss_pred EeecCCceeEEEEEcCCCCCcchhhhc--cceeEEEeChHHH
Confidence 999 99999999999999855 9999999888655
No 141
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.64 E-value=5.4e-07 Score=98.48 Aligned_cols=159 Identities=16% Similarity=0.203 Sum_probs=101.3
Q ss_pred CCeeeEEEeeccCCCCCCCCCCchhhhcccccccccccchhHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCc
Q 002960 520 ENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGA 599 (862)
Q Consensus 520 ~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~ 599 (862)
.+|..+++.|++.|. .||. .... .+..+|++.+|++|+..|+|...|..-.. ++.-....
T Consensus 48 ~~C~~~vvESIP~gl--~f~~--------------~t~~-~sT~eaW~~Ll~sA~~eldIas~ywsL~~---~d~~~~ds 107 (456)
T KOG3603|consen 48 DTCKLVLVESIPAGL--TFPD--------------ASPF-LSTKEAWLELLSTAQEELDIASFYWSLTG---KDTGVVDS 107 (456)
T ss_pred CceeEEEEecccccC--cCcc--------------cCCC-ccHHHHHHHHhhccceEEEEEEEeecccc---ceeccCCC
Confidence 458899999987652 2332 1112 46679999999999999999988865321 11100000
Q ss_pred CCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCcchhhhhHhHHHHHHHHHHHHHHHHHHcCc-CCCCCCcEEEe
Q 002960 600 DNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQV-DAHPQDYLSFY 678 (862)
Q Consensus 600 ~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~gv-~~~p~~yl~~y 678 (862)
.-.-+..+.+.+.+.. +.++.|+|....-|.+.++.. ...|.+.|. ++. -+.+-
T Consensus 108 St~~G~~vy~~L~~~~--~~gIsiriA~~~p~~~~~~~d--------------------~~~Le~~Gaa~vr---~id~~ 162 (456)
T KOG3603|consen 108 STQYGEQVYNTLLALA--KSGVKIRIAQSYPSGGPPNAD--------------------LQVLESLGLAQVR---SIDMN 162 (456)
T ss_pred cchHHHHHHHHHHHhc--cCCeEEEEEeecCCCCCCccc--------------------HHHHHhCCCceEE---eeccc
Confidence 1112566777776663 455999998876444332211 234555562 210 00000
Q ss_pred eCCCcCCCCcccccCCCCcccccccccceeeEEEeEEEEEeeeEEEecCcCccccccCCCCCcceEEEeeCC
Q 002960 679 CLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQP 750 (862)
Q Consensus 679 ~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~ 750 (862)
++-+ ...+|+|..+||+....+||||+++||+.+- -|+++.+++=
T Consensus 163 ------------------------~l~g-~GvlHtKf~vvD~khfylGSaNfDWrSlTqv--kElGv~v~NC 207 (456)
T KOG3603|consen 163 ------------------------RLTG-GGVLHTKFWVVDIKHFYLGSANFDWRSLTQV--KELGVVVRNC 207 (456)
T ss_pred ------------------------cccc-CceEEEEEEEEecceEEEeccccchhhccce--eEeeeEEecC
Confidence 0111 3578999999999999999999999999877 8999999764
No 142
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.59 E-value=1.9e-07 Score=107.34 Aligned_cols=102 Identities=24% Similarity=0.384 Sum_probs=81.9
Q ss_pred CCcEEEEEECC-----eEEEeeeeccCCCCCcee-eEEEEeecCCC-ceEEEEEEecCCCC-CeeeEEEEEeceeeccCc
Q 002960 80 SDPYVTVVVPQ-----ATVARTRVLKNSQEPVWN-EHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE 151 (862)
Q Consensus 80 ~dpYv~v~l~~-----~~~~rT~vi~~t~~P~Wn-e~f~~~v~~~~-~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~ 151 (862)
+.|||+|.+-+ ....+|.|+.|.+||+|| |+|+|.+..|. .-++|.|+|.|.++ ..|||++..|+..|.+|-
T Consensus 1085 ~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf 1164 (1267)
T KOG1264|consen 1085 ACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF 1164 (1267)
T ss_pred cCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccc
Confidence 67999999844 344567778889999999 99999999885 56799999999999 589999999999999885
Q ss_pred eeEEEEEccCCCCCCCCCCceEEEEeeeecCCCC
Q 002960 152 LISRWYDIIAPSGSPPKPGASIQLELKFTPCDKN 185 (862)
Q Consensus 152 ~~~~w~~l~~~~~~~~~~~g~l~l~l~~~~~~~~ 185 (862)
+-+||.+.-.+.. .-+.|.|.++..|+...
T Consensus 1165 ---RsVpLkN~ySEdl-ELaSLLv~i~m~~~~~~ 1194 (1267)
T KOG1264|consen 1165 ---RSVPLKNGYSEDL-ELASLLVFIEMRPVLES 1194 (1267)
T ss_pred ---eeeecccCchhhh-hhhhheeeeEeccccCc
Confidence 5678865544443 36778888887776543
No 143
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=98.59 E-value=3.6e-07 Score=104.78 Aligned_cols=137 Identities=18% Similarity=0.215 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCC--CCCCC
Q 002960 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPE--GDPKT 637 (862)
Q Consensus 560 ~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Pe--g~~~~ 637 (862)
.....+++++|++|+++||||+.||-.... +.++..+|.+|.++++||+|+|++..+=. |...+
T Consensus 34 ~~f~~~Ll~~I~~Ak~~I~l~~y~~~~D~~--------------g~~il~AL~~a~~~~~gv~VrvLvD~~Ra~Rg~iG~ 99 (451)
T PRK09428 34 ADFRETLLEKIASAKKRIYIVALYLEDDEA--------------GREILDALYQAKQQNPELDIKVLVDWHRAQRGLIGA 99 (451)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEecCCch--------------HHHHHHHHHHHHhcCCCcEEEEEEEccccccccccc
Confidence 468899999999999999999999975432 56888888888777889999999984310 00000
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHHHHHcC--cCCCCCCcEEEeeCCCcCCCCcccccCCCCcccccccccceeeEEEeEE
Q 002960 638 NTVQEILFWQSQTMQMMYSVVAQELREMQ--VDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKG 715 (862)
Q Consensus 638 ~~~~~~~~~~~~t~~~~~~~i~~~L~~~g--v~~~p~~yl~~y~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKl 715 (862)
. ... .....++.|.+++ ++ +.+|....+ .+......|-|+
T Consensus 100 ~---------~~~---~~~~~~~~l~~~~~gv~------v~~f~~p~~--------------------~~e~~gr~HrKi 141 (451)
T PRK09428 100 A---------ASN---TNADWYCEMAQEYPGVD------IPVYGVPVN--------------------TREALGVLHLKG 141 (451)
T ss_pred C---------CCC---cCHHHHHHHHHhCCCce------EEEcCCccc--------------------cchhhhhceeeE
Confidence 0 000 0012356676654 53 345633110 011123479999
Q ss_pred EEEeeeEEEecCcCccccccCC----CCCcceEEEeeCCc
Q 002960 716 MIVDDEYVIMGSANINQRSMAG----SKDTEIAMGSYQPH 751 (862)
Q Consensus 716 mIVDD~~~iIGSANln~RSm~g----~~DsEi~v~i~d~~ 751 (862)
+||||++++.| ||||+--+.. ..|. .+.|++|.
T Consensus 142 ~IiD~~v~ysG-aNi~d~Yl~~~~~~r~Dr--y~~i~g~~ 178 (451)
T PRK09428 142 FIIDDTVLYSG-ASLNNVYLHQHDKYRYDR--YHLIRNAE 178 (451)
T ss_pred EEECCCEEEec-ccccHHHhcCCcccCcce--EEEEeCch
Confidence 99999999999 8999966542 2355 45566664
No 144
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=98.58 E-value=3.5e-08 Score=67.69 Aligned_cols=26 Identities=54% Similarity=0.685 Sum_probs=24.5
Q ss_pred eEEEeEEEEEeeeEEEecCcCccccc
Q 002960 709 IYVHAKGMIVDDEYVIMGSANINQRS 734 (862)
Q Consensus 709 iyvHSKlmIVDD~~~iIGSANln~RS 734 (862)
.+.|+|+||||+++++|||+||+.||
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccCCCCC
Confidence 47899999999999999999999987
No 145
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.34 E-value=1.2e-07 Score=107.85 Aligned_cols=149 Identities=17% Similarity=0.332 Sum_probs=97.2
Q ss_pred EEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCC----cCcccccccccccCccCCCcEEEEEECCeEEE
Q 002960 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDD----DGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (862)
Q Consensus 19 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~ 94 (862)
|.|.+.+|++|.++|.+|..-+-|+.++.- ...+-..|+.- +|-+++.+.. +. ++..-+.
T Consensus 116 l~is~~~ak~l~akd~ngfSdP~~m~g~~p---~~~~~~~pra~~eqrdgl~~~~~~~------Gp-------iPAKlIk 179 (1103)
T KOG1328|consen 116 LNISLLEAKDLIAKDVNGFSDPFAMMGVVP---GTRKENSPRALHEQRDGLMHRFQDT------GP-------IPAKLIK 179 (1103)
T ss_pred HHHHHHHhcCccccCCCCCCChhhhhcccc---ccccccChhhhhhhhhhhhhccccC------CC-------CcHHHhh
Confidence 567778899999888887755555443311 00000011111 1111111110 01 1112234
Q ss_pred eeeeccCCCCCceeeEEEEeecCC-CceEEEEEEecCCC-------------------------------------CCee
Q 002960 95 RTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVF-------------------------------------GAQI 136 (862)
Q Consensus 95 rT~vi~~t~~P~Wne~f~~~v~~~-~~~l~~~v~d~d~~-------------------------------------~~~~ 136 (862)
-|.|.+.|+||+|+|.|.|.+.+. .....+.+||+|-- .|+|
T Consensus 180 atsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDF 259 (1103)
T KOG1328|consen 180 ATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDF 259 (1103)
T ss_pred hcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCcccccc
Confidence 688889999999999999999886 45689999997621 1689
Q ss_pred eEEEEEeceeeccCceeEEEEEccCCCCCCCCCCceEEEEeeeecCCCC
Q 002960 137 IGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKN 185 (862)
Q Consensus 137 iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~l~l~l~~~~~~~~ 185 (862)
+|.+.||+.+|... .+++||.| .+.....+..|.++++++..-...+
T Consensus 260 LGciNipl~EiP~~-Gld~WFkL-epRS~~S~VqG~~~LklwLsT~e~~ 306 (1103)
T KOG1328|consen 260 LGCINIPLAEIPPD-GLDQWFKL-EPRSDKSKVQGQVKLKLWLSTKEEG 306 (1103)
T ss_pred ccccccchhcCCcc-hHHHHhcc-CcccccccccceEEEEEEEeeeccc
Confidence 99999999999843 46899999 4544445789999999998665443
No 146
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.28 E-value=2.2e-07 Score=105.82 Aligned_cols=93 Identities=22% Similarity=0.372 Sum_probs=81.6
Q ss_pred eeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---
Q 002960 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (862)
Q Consensus 14 ~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~--- 90 (862)
.-+.+|.|.|+-|+++-..|.+|. +||||.|.+..
T Consensus 944 ~n~q~L~veVlhA~diipLD~NGl------------------------------------------SDPFVviEl~P~~~ 981 (1103)
T KOG1328|consen 944 GNAQTLVVEVLHAKDIIPLDSNGL------------------------------------------SDPFVVIELIPKFR 981 (1103)
T ss_pred ccccchhhhhhccccccccCCCCC------------------------------------------CCCeEEEEeccccc
Confidence 456789999999999988888887 99999999954
Q ss_pred ---eEEEeeeeccCCCCCceeeEEEEeecCC-----CceEEEEEEecCCCC-CeeeEEEEEeceeec
Q 002960 91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (862)
Q Consensus 91 ---~~~~rT~vi~~t~~P~Wne~f~~~v~~~-----~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~ 148 (862)
..++||+|++.|+||+|+|+|.|+|+.+ ...|.|+|.|+|-++ ++|-|++.+-+.++.
T Consensus 982 fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 982 FPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred cccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 4567999999999999999999998765 356899999999998 899999999988766
No 147
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.28 E-value=3e-07 Score=62.47 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=18.2
Q ss_pred eEEEeEEEEEeeeEEEecCcCccccc
Q 002960 709 IYVHAKGMIVDDEYVIMGSANINQRS 734 (862)
Q Consensus 709 iyvHSKlmIVDD~~~iIGSANln~RS 734 (862)
...|+|++||||++++|||+||+.|+
T Consensus 3 ~~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 3 GSHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp BEE---EEEETTTEEEEE---SSHHH
T ss_pred cceeeEEEEEcCCEEEECceecCCCC
Confidence 47899999999999999999999875
No 148
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.20 E-value=5.8e-06 Score=95.71 Aligned_cols=135 Identities=20% Similarity=0.259 Sum_probs=95.1
Q ss_pred HHHHHHHHhcccceEEEE-EEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCcccccccccCCcc
Q 002960 245 EDICHAISEAHHLIYIVG-WSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVM 323 (862)
Q Consensus 245 ~~l~~aI~~Ak~~I~I~~-w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~~~~~~~ 323 (862)
..+..+|.+|+++|+|+. |.+ |+ ..+.++|+.++.+||+|+|++ ++.+..... .+
T Consensus 273 ~~~~~~i~~A~~~i~i~~pYf~-~~----------------~~~~~al~~a~~~Gv~V~ii~-~~~~~~d~~------~~ 328 (438)
T COG1502 273 RLLLKAINSARESILIATPYFV-PD----------------RELLAALKAAARRGVDVRIII-PSLGANDSA------IV 328 (438)
T ss_pred HHHHHHHHhhceEEEEEcCCcC-CC----------------HHHHHHHHHHHhcCCEEEEEe-CCCCCCChH------HH
Confidence 678999999999999998 543 21 578899999999999999998 632111100 00
Q ss_pred cCCcHHHHhhhcCCCceEEecCCCCCCccccccccccccccccccceEEeccCCCCCCcceEEEEccccccCcccCCCCc
Q 002960 324 ATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEH 403 (862)
Q Consensus 324 ~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt~~H 403 (862)
........+.+...|+++...+. + ...|.|++|||++ ++++|+.|++..-+..
T Consensus 329 ~~~~~~~~~~l~~~gv~i~~~~~--------------g--~~lH~K~~iiD~~--------~~~vGS~N~~~rS~~l--- 381 (438)
T COG1502 329 HAAYRAYLKELLEAGVKVYEYPG--------------G--AFLHSKVMIIDDR--------TVLVGSANLDPRSLRL--- 381 (438)
T ss_pred HHHHHHHHHHHHHhCCEEEEecC--------------C--CcceeeEEEEcCC--------EEEEeCCcCCHhHHHH---
Confidence 00012344556678888754321 0 2489999999998 9999999999843310
Q ss_pred ccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEeCH-HHHHHHHHHHHHHHhh
Q 002960 404 RLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKA 459 (862)
Q Consensus 404 ~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gp-aa~dl~~~F~~rW~~~ 459 (862)
--.+.+.|+.+ .+.++...|...|...
T Consensus 382 -----------------------------N~E~~~~i~d~~~~~~~~~~~~~~~~~s 409 (438)
T COG1502 382 -----------------------------NFEVGLVIEDPELALKLRREFEADLARS 409 (438)
T ss_pred -----------------------------hhhheeEEeCHHHHHHHHHHHHHHHHHH
Confidence 12577888888 7899999999777654
No 149
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.97 E-value=1.3e-05 Score=74.18 Aligned_cols=82 Identities=28% Similarity=0.523 Sum_probs=66.1
Q ss_pred cCCCcEEEEEE---CCeEEEeeeeccCCCCCceeeEEEEeec--------CC--------CceEEEEEEecCCC------
Q 002960 78 ITSDPYVTVVV---PQATVARTRVLKNSQEPVWNEHFNIPLA--------HP--------LSNLEIQVKDDDVF------ 132 (862)
Q Consensus 78 ~~~dpYv~v~l---~~~~~~rT~vi~~t~~P~Wne~f~~~v~--------~~--------~~~l~~~v~d~d~~------ 132 (862)
++-++||++.+ ++.+..+|+++.++-.|.|+.+|.|+|. .. ..++.|+||+..+-
T Consensus 31 VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~ 110 (143)
T cd08683 31 VGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTI 110 (143)
T ss_pred cccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCcccccee
Confidence 34899999996 5556679999999999999999999987 11 35689999987532
Q ss_pred -----CCeeeEEEEEeceeecc-CceeEEEEEc
Q 002960 133 -----GAQIIGTAAIPAHTIAT-GELISRWYDI 159 (862)
Q Consensus 133 -----~~~~iG~~~i~l~~l~~-g~~~~~w~~l 159 (862)
+|-++|.+.||+.++.. ...+.+|||+
T Consensus 111 ~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 111 KIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 35689999999998773 4568899985
No 150
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=97.74 E-value=0.00029 Score=74.87 Aligned_cols=189 Identities=17% Similarity=0.174 Sum_probs=111.0
Q ss_pred EeeeecCCCCCccccCCCCCCCCCCccccccccccCCceeEeeeccccCCCCCceecCCCCCCCcchHHHHHHHHHHhcc
Q 002960 176 ELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAH 255 (862)
Q Consensus 176 ~l~~~~~~~~~~~~~gi~~g~~~~gvp~s~~p~~~gn~v~l~~d~~~~~~~~p~~~l~~g~~y~~~~~f~~l~~aI~~Ak 255 (862)
+.+|.|...+..- + .---|.|. ....+.-+++++|..- +....| .+=+.+...|.+|+
T Consensus 90 S~TYwP~~SD~~~-P-----~LdLGWP~-~~~~~g~Tr~~vy~qP--p~~~~p-------------~IKE~vR~~I~~A~ 147 (284)
T PF07894_consen 90 SGTYWPMQSDTEP-P-----PLDLGWPE-TPSYKGVTRATVYFQP--PKDGQP-------------HIKEVVRRMIQQAQ 147 (284)
T ss_pred CcccCCCcCCCCC-C-----CCCCCCCC-CCcccCCceEEEEeCC--CCCCCC-------------CHHHHHHHHHHHhc
Confidence 7888887655320 0 11123444 2222334789998752 222223 45788999999999
Q ss_pred cceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCcccccccccCCcccCCcHHHHhhhc
Q 002960 256 HLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFK 335 (862)
Q Consensus 256 ~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~~~l~ 335 (862)
+-|-|..=.|.+- .-|.++|.++-+|||-||||+ |..+...+ +.....+.. ....++
T Consensus 148 kVIAIVMD~FTD~----------------dIf~DLleAa~kR~VpVYiLL-D~~~~~~F--l~Mc~~~~v----~~~~~~ 204 (284)
T PF07894_consen 148 KVIAIVMDVFTDV----------------DIFCDLLEAANKRGVPVYILL-DEQNLPHF--LEMCEKLGV----NLQHLK 204 (284)
T ss_pred ceeEEEeeccccH----------------HHHHHHHHHHHhcCCcEEEEe-chhcChHH--HHHHHHCCC----ChhhcC
Confidence 9999987555431 467777766559999999999 87643321 110000111 011233
Q ss_pred CCCceEEecCCCCCCccccccccccccccccccceEEeccCCCCCCcceEEEEccccccCcccCCCCcccccCCCcccCC
Q 002960 336 HSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKD 415 (862)
Q Consensus 336 ~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt~~H~l~~~~~~~~~~ 415 (862)
+..|+++--. .+........-...|+|+++||++ .+..|+--++|.-. .-|+
T Consensus 205 nmrVRsv~G~-------~y~~rsg~k~~G~~~eKF~lvD~~--------~V~~GSYSFtWs~~--~~~r----------- 256 (284)
T PF07894_consen 205 NMRVRSVTGC-------TYYSRSGKKFKGQLKEKFMLVDGD--------KVISGSYSFTWSSS--RVHR----------- 256 (284)
T ss_pred CeEEEEecCC-------eeecCCCCeeeCcccceeEEEecc--------cccccccceeeccc--cccc-----------
Confidence 3333332111 111111112234689999999998 88999888777321 2221
Q ss_pred CCCCCCCCCCCCCCCCCcceeeeEEeCHHHHHHHHHHHHHH
Q 002960 416 DFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRW 456 (862)
Q Consensus 416 d~~n~~~~~~~~~~r~pWhDv~~~v~Gpaa~dl~~~F~~rW 456 (862)
-+-..+.|.+|....+.|..-.
T Consensus 257 -------------------~~~~~~tGq~Ve~FD~EFR~Ly 278 (284)
T PF07894_consen 257 -------------------NLVTVLTGQIVESFDEEFRELY 278 (284)
T ss_pred -------------------ceeEEEeccccchHhHHHHHHH
Confidence 3677899999999999997653
No 151
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.62 E-value=8.8e-05 Score=85.53 Aligned_cols=105 Identities=16% Similarity=0.353 Sum_probs=80.3
Q ss_pred CCcEEEEEECCe---EEEeeeeccCCCCCceeeEEEEeecCC----------------CceEEEEEEe-cCCCC-CeeeE
Q 002960 80 SDPYVTVVVPQA---TVARTRVLKNSQEPVWNEHFNIPLAHP----------------LSNLEIQVKD-DDVFG-AQIIG 138 (862)
Q Consensus 80 ~dpYv~v~l~~~---~~~rT~vi~~t~~P~Wne~f~~~v~~~----------------~~~l~~~v~d-~d~~~-~~~iG 138 (862)
+|||++|...+. ...+|+++++|.+|.|+|.|.|.+... ...+.+++|+ .+.+. +.|+|
T Consensus 151 ~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlG 230 (800)
T KOG2059|consen 151 CDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLG 230 (800)
T ss_pred CCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhce
Confidence 899999998542 235899999999999999999997765 2457899998 44444 89999
Q ss_pred EEEEeceeeccCceeEEEEEccCC-CCCC---CCCCceEEEEeeeecCCC
Q 002960 139 TAAIPAHTIATGELISRWYDIIAP-SGSP---PKPGASIQLELKFTPCDK 184 (862)
Q Consensus 139 ~~~i~l~~l~~g~~~~~w~~l~~~-~~~~---~~~~g~l~l~l~~~~~~~ 184 (862)
++.+|+..+......+.||-|... +|+. ....|.+++.+.|+..-.
T Consensus 231 evrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~V 280 (800)
T KOG2059|consen 231 EVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHV 280 (800)
T ss_pred eEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeecee
Confidence 999999987755556899998532 3322 234688999999877433
No 152
>PF13918 PLDc_3: PLD-like domain
Probab=97.62 E-value=0.00051 Score=68.21 Aligned_cols=60 Identities=32% Similarity=0.506 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhccceEEEeeccccc------ccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCC
Q 002960 561 SIQTAYIQAIRSAQHFIYIENQYFLG------SSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGD 634 (862)
Q Consensus 561 sI~~ay~~~I~~A~~~IyIenqyF~~------~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Peg~ 634 (862)
.-.+|+++.|.+|++||||+-.-|.+ ....||. .+.|++-| ++. ++|+|++++..|...+
T Consensus 82 ~DldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP~-----------ID~ALR~A-A~~--R~V~VRlLIS~W~ht~ 147 (177)
T PF13918_consen 82 LDLDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWPV-----------IDDALRRA-AIE--RGVKVRLLISCWKHTD 147 (177)
T ss_pred cHHHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcchh-----------HHHHHHHH-HHH--cCCeEEEEEeecCCCC
Confidence 45689999999999999998554443 2335773 23333322 234 4599999999986543
No 153
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=97.61 E-value=0.00039 Score=83.18 Aligned_cols=119 Identities=18% Similarity=0.177 Sum_probs=82.3
Q ss_pred HHHHHHHHhccc-----eEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCc
Q 002960 564 TAYIQAIRSAQH-----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (862)
Q Consensus 564 ~ay~~~I~~A~~-----~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Peg~~~~~ 638 (862)
...++.|++|.+ .|.|+-.-+... ..++.++.+|+++| ++|.|++-...-.+. ..
T Consensus 342 ~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~-----------------s~ii~aL~~Aa~~G--k~V~v~veLkArfde-~~ 401 (672)
T TIGR03705 342 DPVVEFLRQAAEDPDVLAIKQTLYRTSKD-----------------SPIIDALIEAAENG--KEVTVVVELKARFDE-EA 401 (672)
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEecCC-----------------cHHHHHHHHHHHcC--CEEEEEEEehhhccc-hh
Confidence 568889999998 899976444322 24667888887665 888888874321111 11
Q ss_pred chhhhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEeeCCCcCCCCcccccCCCCcccccccccceeeEEEeEEEEE
Q 002960 639 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 718 (862)
Q Consensus 639 ~~~~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIV 718 (862)
+. ...+.|.++|+++ +|++ ....+|+|+|+|
T Consensus 402 ni----------------~wa~~le~aG~~v-------iyg~--------------------------~~~k~H~K~~li 432 (672)
T TIGR03705 402 NI----------------RWARRLEEAGVHV-------VYGV--------------------------VGLKTHAKLALV 432 (672)
T ss_pred hH----------------HHHHHHHHcCCEE-------EEcC--------------------------CCeeeeeEEEEE
Confidence 11 1356888999875 5644 135899999999
Q ss_pred ee-------eEEEecCcCccccccCCCCCcceEEEeeCCccc
Q 002960 719 DD-------EYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (862)
Q Consensus 719 DD-------~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 753 (862)
|+ .++.||+.|+|......- +++++...+++.+
T Consensus 433 ~r~~~~~~~~y~~igTgN~n~~ta~~y--~D~~l~t~~~~i~ 472 (672)
T TIGR03705 433 VRREGGELRRYVHLGTGNYHPKTARLY--TDLSLFTADPEIG 472 (672)
T ss_pred EEeeCCceEEEEEecCCCCCCcccccc--cceeEEEeChHHH
Confidence 98 479999999999976544 7788776666543
No 154
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.59 E-value=4.9e-05 Score=91.33 Aligned_cols=105 Identities=22% Similarity=0.459 Sum_probs=84.4
Q ss_pred EeeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC---
Q 002960 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--- 89 (862)
Q Consensus 13 ~~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~--- 89 (862)
.+-.|+|.|-|.-|++|+-.. +|.. .||||+.++-
T Consensus 1520 sY~~~~LtImV~H~K~L~~Lq-----------------------------dg~~-------------P~pyVK~YLlPdp 1557 (1639)
T KOG0905|consen 1520 SYNNGTLTIMVMHAKGLALLQ-----------------------------DGQD-------------PDPYVKTYLLPDP 1557 (1639)
T ss_pred EEcCceEEEEhhhhccccccc-----------------------------CCCC-------------CCcceeEEecCCc
Confidence 466899999999999996322 1222 8999999982
Q ss_pred -CeEEEeeeeccCCCCCceeeEEEEe-ecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEc
Q 002960 90 -QATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (862)
Q Consensus 90 -~~~~~rT~vi~~t~~P~Wne~f~~~-v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (862)
+..+.||+|+++|.||.|||..... .+.. ...+.++||..+.+. +.++|.+.|||.++.-.++..+||+|
T Consensus 1558 ~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1558 RKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred hHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 2456799999999999999998876 3332 367899999998888 89999999999988766666699998
No 155
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.43 E-value=0.00011 Score=50.44 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=22.2
Q ss_pred cccccceEEeccCCCCCCcceEEEEccccccC
Q 002960 364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCD 395 (862)
Q Consensus 364 ~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~ 395 (862)
.++|+|++|||++ .+|+||.|++.
T Consensus 3 ~~~H~K~~v~D~~--------~~~iGs~N~~~ 26 (28)
T smart00155 3 GVLHTKLMIVDDE--------IAYIGSANLDG 26 (28)
T ss_pred CcEEeEEEEEcCC--------EEEEeCccCCC
Confidence 3699999999998 99999999987
No 156
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=97.36 E-value=0.023 Score=62.17 Aligned_cols=130 Identities=17% Similarity=0.154 Sum_probs=72.5
Q ss_pred CcchHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHc--CCEEEEEEeCCC-Cccccc
Q 002960 239 KPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEE--GVRVLLLVWDDK-TSHDKL 315 (862)
Q Consensus 239 ~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~r--GV~VriLvwd~~-~s~~~~ 315 (862)
+|.++|+.+...|.+||+.|+|+.-.+.. ....|.+.|..+-+. -.+|.||+ |.. +....+
T Consensus 36 ep~~fy~~lk~~I~~aq~Ri~lasLYlG~---------------~E~elv~cl~~aL~~~~~L~v~iLl-D~~rgtr~~~ 99 (469)
T KOG3964|consen 36 EPPEFYQRLKKLIKKAQRRIFLASLYLGK---------------LERELVDCLSNALEKNPSLKVSILL-DFLRGTRELP 99 (469)
T ss_pred CCHHHHHHHHHHHHHhhheeeeeeeccch---------------hHHHHHHHHHHHhccCCCcEEEeeh-hhhhhcccCc
Confidence 35788999999999999999998754422 136788888777654 68999998 764 221110
Q ss_pred ccccCCcccCCcHHHHhhhcCCCceEEecC--CCCCCccccccccccccccccccceEEeccCCCCCCcceEEEEccccc
Q 002960 316 GVKTPGVMATHDEETKKFFKHSSVNCVLAP--RYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDL 393 (862)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~--~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl 393 (862)
...+ |...-.-.+++ ...|++.++. .+.+....+.-....-.....|-|+.-+|.+ ..+-|.|+
T Consensus 100 ~~~s---~llp~~l~kkf--~e~vd~~lyhtp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fdde---------viiSGanl 165 (469)
T KOG3964|consen 100 NSCS---ALLPVWLGKKF--PERVDESLYHTPFLRGLSKSLVPARFNEGLGLQHMKIYGFDDE---------VIISGANL 165 (469)
T ss_pred ccch---hhchHHHhhhh--hhhhceeeecChhhhhhhhhcCchhhccccchhhhhhhcccHh---------hhcccccc
Confidence 0000 00000001111 1244444431 1100000000000001224689999999994 58899999
Q ss_pred cCccc
Q 002960 394 CDGRY 398 (862)
Q Consensus 394 ~~~R~ 398 (862)
+..++
T Consensus 166 s~dyf 170 (469)
T KOG3964|consen 166 SNDYF 170 (469)
T ss_pred hhhhh
Confidence 99655
No 157
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.25 E-value=0.00032 Score=83.83 Aligned_cols=87 Identities=23% Similarity=0.426 Sum_probs=76.0
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeE-EEee
Q 002960 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT-VART 96 (862)
Q Consensus 18 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~-~~rT 96 (862)
...|+|.+|-+|...|..+. +|||+.+.+++.. .-++
T Consensus 614 LvrVyvv~A~~L~p~D~ng~------------------------------------------adpYv~l~lGk~~~~d~~ 651 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGD------------------------------------------ADPYVKLLLGKKRTLDRA 651 (1105)
T ss_pred eEEEEEEEeeeccccCCCCC------------------------------------------cCceeeeeeccchhhhhh
Confidence 46789999999998888776 9999999998864 3478
Q ss_pred eeccCCCCCceeeEEEEeecCCC-ceEEEEEEecCCCC-CeeeEEEEEecee
Q 002960 97 RVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHT 146 (862)
Q Consensus 97 ~vi~~t~~P~Wne~f~~~v~~~~-~~l~~~v~d~d~~~-~~~iG~~~i~l~~ 146 (862)
+-+.+++||+|++.|.+.+.-+. ..+.++|+|.|.++ ++.||+..+.++.
T Consensus 652 ~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 652 HYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred hcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhh
Confidence 88999999999999999988774 56799999999998 9999999998873
No 158
>PF13918 PLDc_3: PLD-like domain
Probab=97.23 E-value=0.0015 Score=65.03 Aligned_cols=69 Identities=23% Similarity=0.311 Sum_probs=51.9
Q ss_pred CCceecCCCCCCCcchHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHH-HcCCEEEEEE
Q 002960 227 LPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKS-EEGVRVLLLV 305 (862)
Q Consensus 227 ~p~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA-~rGV~VriLv 305 (862)
.|+-..-.|+ ..-.++|+..|++|+++|||+-....|-+.. ..+.+-| ..|+++|++|| +|||+||+|+
T Consensus 71 SPp~~~~~gR----T~DldAIl~~I~~A~~fI~IsVMdY~P~~~~-~~~~~YW-----P~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 71 SPPPFCPKGR----TLDLDAILSVIDSAKKFIYISVMDYLPTSRY-SKPNRYW-----PVIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred CCcccCCCCC----CcHHHHHHHHHHhHhheEEEEEeecCCeeec-CCCCCcc-----hhHHHHHHHHHHHcCCeEEEEE
Confidence 4555555555 3358899999999999999999888885432 1222333 48999999887 8999999999
No 159
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.00027 Score=75.16 Aligned_cols=100 Identities=24% Similarity=0.347 Sum_probs=78.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 002960 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (862)
Q Consensus 16 ~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~----~ 91 (862)
..-|.|+|+++..|..+|..+. +||||.+.+.. .
T Consensus 232 ~~~l~vt~iRc~~l~ssDsng~------------------------------------------sDpyvS~~l~pdv~~~ 269 (362)
T KOG1013|consen 232 TPGLIVTIIRCSHLASSDSNGY------------------------------------------SDPYVSQRLSPDVGKK 269 (362)
T ss_pred CCceEEEEEEeeeeeccccCCC------------------------------------------CCccceeecCCCcchh
Confidence 4568899999999999887776 99999998832 3
Q ss_pred EEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEc
Q 002960 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (862)
Q Consensus 92 ~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (862)
-..+|.+.+++.+|+||++|.+.+.+. ...+.++|||.+.-+ .+++|-..+.. +..++....|+..
T Consensus 270 fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~--~rr~~v~~h~gr~ 339 (362)
T KOG1013|consen 270 FKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGG--YRRGEVHKHWGRC 339 (362)
T ss_pred hcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccc--cccchhhcCcccc
Confidence 346999999999999999999998876 356899999998875 78888755533 3445555666554
No 160
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.14 E-value=0.00035 Score=76.11 Aligned_cols=98 Identities=14% Similarity=0.277 Sum_probs=79.3
Q ss_pred CCcEEEEEE----CCeEEEeeeeccCCCCCceeeEEEEeecCC------------CceEEEEEEecCCCC--CeeeEEEE
Q 002960 80 SDPYVTVVV----PQATVARTRVLKNSQEPVWNEHFNIPLAHP------------LSNLEIQVKDDDVFG--AQIIGTAA 141 (862)
Q Consensus 80 ~dpYv~v~l----~~~~~~rT~vi~~t~~P~Wne~f~~~v~~~------------~~~l~~~v~d~d~~~--~~~iG~~~ 141 (862)
.|.|+.+++ +.....+|.|++++.+|.|+|.|.+.+... ...+.|++++...|- |+++|.+.
T Consensus 388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence 678888876 223346999999999999999999998762 245899999988774 89999999
Q ss_pred EeceeeccCceeEEEEEccCCCCCCCCCCceEEEEeeee
Q 002960 142 IPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFT 180 (862)
Q Consensus 142 i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~l~l~l~~~ 180 (862)
+.++.|....+++..++|.+. ++ ..+|+|.++++.-
T Consensus 468 ikle~Len~cei~e~~~l~DG--RK-~vGGkLevKvRiR 503 (523)
T KOG3837|consen 468 IKLEILENMCEICEYLPLKDG--RK-AVGGKLEVKVRIR 503 (523)
T ss_pred eeehhhhcccchhhceecccc--cc-ccCCeeEEEEEEe
Confidence 999999888888899999653 32 3689999998753
No 161
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.0013 Score=74.71 Aligned_cols=80 Identities=23% Similarity=0.347 Sum_probs=68.3
Q ss_pred CCcEEEEEE------CCeEEEeeeeccCCCCCceeeEEEEeecCC----CceEEEEEEecCCCC-CeeeEEEEEeceeec
Q 002960 80 SDPYVTVVV------PQATVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (862)
Q Consensus 80 ~dpYv~v~l------~~~~~~rT~vi~~t~~P~Wne~f~~~v~~~----~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~ 148 (862)
..|||+|.+ ++.+...|+...|+-.|.+||+|+|-+... .-++.|.|+|....+ |.++|-+.++|.++.
T Consensus 1145 FrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va 1224 (1283)
T KOG1011|consen 1145 FRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVA 1224 (1283)
T ss_pred cccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHh
Confidence 679999998 234667899999999999999999998765 346899999998888 899999999999998
Q ss_pred cCceeEEEEEc
Q 002960 149 TGELISRWYDI 159 (862)
Q Consensus 149 ~g~~~~~w~~l 159 (862)
....--.|+||
T Consensus 1225 ~kGS~a~W~pL 1235 (1283)
T KOG1011|consen 1225 DKGSCACWVPL 1235 (1283)
T ss_pred hcCceeEeeec
Confidence 76667789999
No 162
>PLN02866 phospholipase D
Probab=97.07 E-value=0.002 Score=78.88 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEec
Q 002960 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIP 628 (862)
Q Consensus 560 ~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp 628 (862)
.....+++++|.+||++|||+.-.|.+..+.+... .-.++..+...|.++++ +||+|+||+=
T Consensus 343 ~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~-----~D~~g~RL~~lL~rKAk--rGVkVrVLLy 404 (1068)
T PLN02866 343 HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPF-----HDHESSRLDSLLEAKAK--QGVQIYILLY 404 (1068)
T ss_pred HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecC-----CCchHHHHHHHHHHHHH--CCCEEEEEEE
Confidence 56789999999999999999654443322211100 00125567777777755 5699999753
No 163
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=96.88 E-value=0.14 Score=56.09 Aligned_cols=138 Identities=20% Similarity=0.218 Sum_probs=80.4
Q ss_pred chHHHHHHHHHHhcc-----cceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCccccc
Q 002960 241 GTCWEDICHAISEAH-----HLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKL 315 (862)
Q Consensus 241 ~~~f~~l~~aI~~Ak-----~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~ 315 (862)
-+.|+.+.+.|++|- .+|.|+-|.+.. ...+.++|.+||+.|=+|.++| .-..
T Consensus 17 Y~sf~~vv~fl~eAA~DP~V~aIk~TLYR~a~----------------~S~iv~aLi~AA~nGK~Vtv~v-ELkA----- 74 (352)
T PF13090_consen 17 YESFDPVVDFLREAAEDPDVLAIKITLYRVAS----------------NSPIVNALIEAAENGKQVTVLV-ELKA----- 74 (352)
T ss_dssp TB-TCHHHHHHHHHCC-TTEEEEEEEESSS-T----------------T-HHHHHHHHHHHTT-EEEEEE-STTS-----
T ss_pred ccccHHHHHHHHHHhcCCCccEEEEEEEecCC----------------CCHHHHHHHHHHHcCCEEEEEE-EEec-----
Confidence 345778888898883 567777765433 2589999999999999999999 3221
Q ss_pred ccccCCcccCCcHHHHhhhcCCCceEEecCCCCCCccccccccccccccccccceEEeccCCCCCCcceEEEEccccccC
Q 002960 316 GVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCD 395 (862)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~ 395 (862)
.|... .+-.+.+.|+.+|++|.+. .+ .+--|.|+++|=-+..+ .-+..+++|-=|...
T Consensus 75 RFDEe-----~Ni~Wa~~Le~aGv~ViyG--~~--------------glKvHaK~~lI~R~e~~-~~~~Y~hlgTGNyNe 132 (352)
T PF13090_consen 75 RFDEE-----NNIHWAKRLEEAGVHVIYG--VP--------------GLKVHAKICLIVRREGG-GLRRYAHLGTGNYNE 132 (352)
T ss_dssp SSTTC-----CCCCCCHHHHHCT-EEEE----T--------------T-EE--EEEEEEEEETT-EEEEEEEEESS-SST
T ss_pred cccHH-----HHhHHHhhHHhcCeEEEcC--CC--------------ChhheeeEEEEEEEeCC-cEEEEEEEcCCCcCc
Confidence 11100 0112456688999999852 11 12369999998554222 123366666555333
Q ss_pred cccCCCCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEeCH-HHHHHHHHHHH
Q 002960 396 GRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQ 454 (862)
Q Consensus 396 ~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gp-aa~dl~~~F~~ 454 (862)
.+. .-+-|+.+.-.-| .+.|+...|..
T Consensus 133 -------------------------------~TA-r~YtD~~l~Ta~~~i~~D~~~~F~~ 160 (352)
T PF13090_consen 133 -------------------------------KTA-RIYTDLSLFTADPEIGADVAKLFNY 160 (352)
T ss_dssp -------------------------------THC-CCEEEEEEEE--HHHHHHHHHHHHH
T ss_pred -------------------------------cch-hheecceeecCCHHHHHHHHHHHHH
Confidence 011 2356888888777 57999998865
No 164
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.0011 Score=71.91 Aligned_cols=86 Identities=19% Similarity=0.380 Sum_probs=69.7
Q ss_pred CCcEEEEEEC-C---eEEEeeeeccCCCCCceeeEEEEeecCCCceEEEEEEec-CCCC-CeeeEEEEEeceeeccCc-e
Q 002960 80 SDPYVTVVVP-Q---ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD-DVFG-AQIIGTAAIPAHTIATGE-L 152 (862)
Q Consensus 80 ~dpYv~v~l~-~---~~~~rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~-d~~~-~~~iG~~~i~l~~l~~g~-~ 152 (862)
++|||+|++- + ..+.+|+...++.+|.+.+...|.-..+..-+.++||-+ ..+. +.|+|.+.+-++++..+. .
T Consensus 291 ~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~ 370 (405)
T KOG2060|consen 291 PAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSP 370 (405)
T ss_pred cCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccccccchHHHhhHHHHHhhhhcccccc
Confidence 8999999982 2 234589999999999888888888888888899999953 4444 689999999999988665 7
Q ss_pred eEEEEEccCCCCC
Q 002960 153 ISRWYDIIAPSGS 165 (862)
Q Consensus 153 ~~~w~~l~~~~~~ 165 (862)
+-+||+++.....
T Consensus 371 ~igwyKlfgsssl 383 (405)
T KOG2060|consen 371 VIGWYKLFGSSSL 383 (405)
T ss_pred ceeeeeccCCccC
Confidence 8899999776544
No 165
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.0003 Score=74.91 Aligned_cols=127 Identities=22% Similarity=0.280 Sum_probs=91.4
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----eE
Q 002960 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT 92 (862)
Q Consensus 17 g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~----~~ 92 (862)
..++.+|..|++|..|+..+. .|||++..+.. ..
T Consensus 93 ~~~~~tl~~a~~lk~~~~~~~------------------------------------------~d~~~~~~llpga~kl~ 130 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDINGL------------------------------------------ADPYVKLHLLPGAGKLN 130 (362)
T ss_pred hhcceeechhcccchhhhhhh------------------------------------------cchHHhhhcccchhhhh
Confidence 358899999999999998876 89999998732 22
Q ss_pred EEeeeeccCCCCCceeeEEEEeec-C-C--CceEEEEEEecCCCC-CeeeEEEEEeceeeccCce--eEEEEEccCCCC-
Q 002960 93 VARTRVLKNSQEPVWNEHFNIPLA-H-P--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL--ISRWYDIIAPSG- 164 (862)
Q Consensus 93 ~~rT~vi~~t~~P~Wne~f~~~v~-~-~--~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~--~~~w~~l~~~~~- 164 (862)
..||++..|+.||.|+|+-....- . . ...+++.|.|++.+. ++++|+..+++..+.+.+. ...||.-.-+.+
T Consensus 131 slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~r 210 (362)
T KOG1013|consen 131 SLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSER 210 (362)
T ss_pred hhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCccc
Confidence 258999999999999988777632 2 2 245678888988888 7999999999988875443 223433211211
Q ss_pred --C-CCCCCceEEEEeeeecCCCC
Q 002960 165 --S-PPKPGASIQLELKFTPCDKN 185 (862)
Q Consensus 165 --~-~~~~~g~l~l~l~~~~~~~~ 185 (862)
. ..++.|+|.+++.|......
T Consensus 211 ad~~~~E~rg~i~isl~~~s~~~~ 234 (362)
T KOG1013|consen 211 ADRDEDEERGAILISLAYSSTTPG 234 (362)
T ss_pred ccccchhhccceeeeeccCcCCCc
Confidence 1 13568999999987665443
No 166
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.78 E-value=0.00038 Score=83.24 Aligned_cols=132 Identities=14% Similarity=0.112 Sum_probs=82.3
Q ss_pred CCcEEEEEECCeEEEeeeeccCCCCCceeeEEEEe---ecC-------CCceEEEEEEecCCCC-CeeeEEEEEeceeec
Q 002960 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIP---LAH-------PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (862)
Q Consensus 80 ~dpYv~v~l~~~~~~rT~vi~~t~~P~Wne~f~~~---v~~-------~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~ 148 (862)
+|||+.|.+-++.. .|-++.+|+||.|+++..|. +.- .-..++|+|+|.+..+ ++++|+.......+.
T Consensus 227 sdp~a~v~f~~qs~-~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~ 305 (1105)
T KOG1326|consen 227 SDPDAAVEFCGQSK-ETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMV 305 (1105)
T ss_pred CCchhhhhcccccc-eeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceEEEe
Confidence 99999999877664 89999999999999999886 211 1245799999999999 899999887655444
Q ss_pred cCceeEEEEEccCCCCCCCCCCceEEEEeeeecCCCCCccccCCCCCCCCCCccccccccccCCceeEee
Q 002960 149 TGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQ 218 (862)
Q Consensus 149 ~g~~~~~w~~l~~~~~~~~~~~g~l~l~l~~~~~~~~~~~~~gi~~g~~~~gvp~s~~p~~~gn~v~l~~ 218 (862)
. .+.-.|+|+... + ...|.+.++....-....-.+-.-+. ..-+.++|....|......++++-
T Consensus 306 ~-~p~lkw~p~~rg-~---~l~gd~l~a~eliq~~~~i~~p~~~~-~~~~~~vp~~iRp~~q~~~~evl~ 369 (1105)
T KOG1326|consen 306 Q-CPALKWVPTMRG-A---FLDGDVLIAAELIQIGKPIPQPPPQR-EIIFSLVPKKIRPKTQIGKAELLM 369 (1105)
T ss_pred c-CCccceEEeecc-c---ccccchhHHHHHHhhcCCCCCCCccc-ccceeccccCCCcceeeeeeehhh
Confidence 3 455689998533 2 13455444442222222000000001 123445555555555555555543
No 167
>PLN02964 phosphatidylserine decarboxylase
Probab=96.45 E-value=0.0043 Score=73.85 Aligned_cols=85 Identities=20% Similarity=0.358 Sum_probs=66.7
Q ss_pred CCcEEEEEECCeEEEeeeeccCCCCCceeeEEEEeecCCCce-EEEEEEecCCCC-CeeeEEEEEeceeeccCce--eEE
Q 002960 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL--ISR 155 (862)
Q Consensus 80 ~dpYv~v~l~~~~~~rT~vi~~t~~P~Wne~f~~~v~~~~~~-l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~--~~~ 155 (862)
.|+|..+..-+.++.||.+.++|.||+|||...|.+...... ..|.|+|.+.++ ++++|.+.+++.++...+. ...
T Consensus 68 ~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elke 147 (644)
T PLN02964 68 KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACE 147 (644)
T ss_pred CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHH
Confidence 578777766666778999999999999999999988765433 499999999999 8999999998887765443 222
Q ss_pred EEEccCCCC
Q 002960 156 WYDIIAPSG 164 (862)
Q Consensus 156 w~~l~~~~~ 164 (862)
-|.++++++
T Consensus 148 aF~lfD~dg 156 (644)
T PLN02964 148 SFDLLDPSS 156 (644)
T ss_pred HHHHHCCCC
Confidence 366777765
No 168
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.42 E-value=0.0033 Score=71.98 Aligned_cols=124 Identities=23% Similarity=0.280 Sum_probs=79.8
Q ss_pred CCcEEEEEE---CC--eEEEeeeeccCCCCCceeeEEEEeecC-----CCceEEEEEEecCCCC-CeeeEEEEEeceeec
Q 002960 80 SDPYVTVVV---PQ--ATVARTRVLKNSQEPVWNEHFNIPLAH-----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (862)
Q Consensus 80 ~dpYv~v~l---~~--~~~~rT~vi~~t~~P~Wne~f~~~v~~-----~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~ 148 (862)
+|||..+.- ++ ..+.||.+++++++|.|. .|.+++.. ....+.+.++|.+..+ +++||++..++..+.
T Consensus 157 sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~-~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 157 SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWA-PFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQ 235 (529)
T ss_pred CCcceEEEEecCCCceeeccccceeccCCCCccc-ccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhc
Confidence 899999875 12 457899999999999995 56666332 2467889999999988 599999999998876
Q ss_pred cCceeEEEEEccCCCCC----CCCCCceEEEEeeeecCCCCCccccCCCCCCCCCCccccccc
Q 002960 149 TGELISRWYDIIAPSGS----PPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFP 207 (862)
Q Consensus 149 ~g~~~~~w~~l~~~~~~----~~~~~g~l~l~l~~~~~~~~~~~~~gi~~g~~~~gvp~s~~p 207 (862)
. ......+++..+.++ ..+..|++.+.- +.....+.+..++.+|.+..-.-...|.
T Consensus 236 ~-~~~~~~~~~~~~~~~~~~k~~k~~g~~~l~~--~~~~~~~sfld~i~gg~~lnf~vgIDfT 295 (529)
T KOG1327|consen 236 E-PGSPNQIMLINPKKKAKKKSYKNSGQLILDR--FTSLDQYSFLDYIAGGEQLNFTVGIDFT 295 (529)
T ss_pred c-cCCcccccccChhhhhhhhcccccceEEehh--eeehhhhhHHHHHccCceeeeEEEEEEe
Confidence 3 222233344454432 233345544432 2334456677777775555444333333
No 169
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.13 E-value=0.019 Score=68.18 Aligned_cols=101 Identities=25% Similarity=0.401 Sum_probs=77.0
Q ss_pred eeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---
Q 002960 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (862)
Q Consensus 14 ~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~--- 90 (862)
.+-+++.|+|+++.-|..++ ...||.|.+-+
T Consensus 700 vIA~t~sV~VISgqFLSdrk----------------------------------------------vgtyVEVdmfgLP~ 733 (1189)
T KOG1265|consen 700 VIAATLSVTVISGQFLSDRK----------------------------------------------VGTYVEVDMFGLPT 733 (1189)
T ss_pred eEEeeEEEEEEeeeeccccc----------------------------------------------cCceEEEEecCCCc
Confidence 46789999999998776433 45799999832
Q ss_pred ---eEEEeeeeccC-CCCCcee-eEEEEe--ecCCCceEEEEEEecCCCCCeeeEEEEEeceeeccCceeEEEEEccCCC
Q 002960 91 ---ATVARTRVLKN-SQEPVWN-EHFNIP--LAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (862)
Q Consensus 91 ---~~~~rT~vi~~-t~~P~Wn-e~f~~~--v~~~~~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~ 163 (862)
.+..||+++.+ +.||+|+ |.|.|. +-+....|.|.|++++ ..+||+--+|+..|..|. +.+-|..+.
T Consensus 734 Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg---gK~ig~RIlpvd~l~~GY---rhv~LRse~ 807 (1189)
T KOG1265|consen 734 DTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG---GKFIGQRILPVDGLNAGY---RHVCLRSES 807 (1189)
T ss_pred hhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC---CceeeeeccchhcccCcc---eeEEecCCC
Confidence 14468988776 8999999 678887 4455678899999973 579999999999998886 445565665
Q ss_pred CCC
Q 002960 164 GSP 166 (862)
Q Consensus 164 ~~~ 166 (862)
++|
T Consensus 808 Nqp 810 (1189)
T KOG1265|consen 808 NQP 810 (1189)
T ss_pred CCc
Confidence 555
No 170
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=96.07 E-value=0.048 Score=58.30 Aligned_cols=130 Identities=18% Similarity=0.227 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCcc
Q 002960 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (862)
Q Consensus 560 ~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Peg~~~~~~ 639 (862)
.+|.+...++|++|++-|=|..--|+. .+|..-|..|. ..++|-|||++.. ..
T Consensus 133 p~IKE~vR~~I~~A~kVIAIVMD~FTD------------------~dIf~DLleAa-~kR~VpVYiLLD~--------~~ 185 (284)
T PF07894_consen 133 PHIKEVVRRMIQQAQKVIAIVMDVFTD------------------VDIFCDLLEAA-NKRGVPVYILLDE--------QN 185 (284)
T ss_pred CCHHHHHHHHHHHhcceeEEEeecccc------------------HHHHHHHHHHH-HhcCCcEEEEech--------hc
Confidence 579999999999999999999888873 35555566664 1356999999974 22
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEeeCCCcCCCCcccccCCCCcccccccccceeeEEEeEEEEEe
Q 002960 640 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD 719 (862)
Q Consensus 640 ~~~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVD 719 (862)
++.++. | -.+.++...-...+++=.+ .|..+.. +..+...+-+|.|+||||
T Consensus 186 ~~~Fl~-----M----------c~~~~v~~~~~~nmrVRsv-------------~G~~y~~-rsg~k~~G~~~eKF~lvD 236 (284)
T PF07894_consen 186 LPHFLE-----M----------CEKLGVNLQHLKNMRVRSV-------------TGCTYYS-RSGKKFKGQLKEKFMLVD 236 (284)
T ss_pred ChHHHH-----H----------HHHCCCChhhcCCeEEEEe-------------cCCeeec-CCCCeeeCcccceeEEEe
Confidence 332222 1 1122332110111111111 1111110 011234568999999999
Q ss_pred eeEEEecCcCccccccCCCCCcceEEEe
Q 002960 720 DEYVIMGSANINQRSMAGSKDTEIAMGS 747 (862)
Q Consensus 720 D~~~iIGSANln~RSm~g~~DsEi~v~i 747 (862)
.+.|+.||.-+.+.|-..+ +-+...+
T Consensus 237 ~~~V~~GSYSFtWs~~~~~--r~~~~~~ 262 (284)
T PF07894_consen 237 GDKVISGSYSFTWSSSRVH--RNLVTVL 262 (284)
T ss_pred cccccccccceeecccccc--cceeEEE
Confidence 9999999999999988744 6666655
No 171
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=95.98 E-value=0.97 Score=53.13 Aligned_cols=101 Identities=21% Similarity=0.201 Sum_probs=62.5
Q ss_pred CCcchHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCccccccc
Q 002960 238 YKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGV 317 (862)
Q Consensus 238 y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~ 317 (862)
|-|-+.|+.+.+.|++|-.-=.+.. =.++|-|.. .+..|.++|.+||+.|-+|-+|| .-. ..+
T Consensus 348 hHPYeSF~~Vv~fl~qAA~DP~VLA----IKqTLYRt~-------~dSpIV~ALi~AA~nGKqVtvlV-ELk-----ARF 410 (696)
T COG0855 348 HHPYESFEPVVEFLRQAAADPDVLA----IKQTLYRTS-------KDSPIVRALIDAAENGKQVTVLV-ELK-----ARF 410 (696)
T ss_pred ECchhhhHHHHHHHHHhhcCCCeEE----EEEEEEecC-------CCCHHHHHHHHHHHcCCeEEEEE-EEh-----hhc
Confidence 4455779999999999954211110 012333432 24689999999999999999998 211 111
Q ss_pred ccCCcccCCcHHHHhhhcCCCceEEecCCCCCCccccccccccccccccccceEEeccC
Q 002960 318 KTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQ 376 (862)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~ 376 (862)
..+ .+-.+.+.|+.+||+|++-- + .+--|-|+++|=-+
T Consensus 411 DEE-----~NI~WAk~LE~AGvhVvyG~--~--------------glKtHAKm~lVvRr 448 (696)
T COG0855 411 DEE-----ANIHWAKRLERAGVHVVYGV--V--------------GLKTHAKMLLVVRR 448 (696)
T ss_pred Chh-----hhhHHHHHHHhCCcEEEecc--c--------------ceeeeeeEEEEEEe
Confidence 000 11235677889999998521 1 12469999888544
No 172
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=95.93 E-value=0.029 Score=59.31 Aligned_cols=50 Identities=30% Similarity=0.268 Sum_probs=40.3
Q ss_pred chHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeC
Q 002960 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD 307 (862)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd 307 (862)
....+.+.+.|++|+++|+|..|. .. -..|.+.|++|.+|||+|.++++.
T Consensus 9 ~~I~~~i~elI~~Ae~eI~is~~~--~~---------------l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 9 ETILERIRELIENAESEIYISIPP--EF---------------LEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHC-SSEEEEEE-G--GG---------------HHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHhheEEEEEcCH--HH---------------HHHHHHHHHHHHHCCCEEEEEEeC
Confidence 667899999999999999999872 11 258999999999999999999955
No 173
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.85 E-value=0.19 Score=48.66 Aligned_cols=104 Identities=18% Similarity=0.250 Sum_probs=70.8
Q ss_pred CCcEEEEEECCeE--EEeeeeccC-CCCCceeeEEEEeecCC---------CceEEEEEEecCCCCC-eeeEEEEEecee
Q 002960 80 SDPYVTVVVPQAT--VARTRVLKN-SQEPVWNEHFNIPLAHP---------LSNLEIQVKDDDVFGA-QIIGTAAIPAHT 146 (862)
Q Consensus 80 ~dpYv~v~l~~~~--~~rT~vi~~-t~~P~Wne~f~~~v~~~---------~~~l~~~v~d~d~~~~-~~iG~~~i~l~~ 146 (862)
...||....++.. .+.|..... ...-.|||.|.+.|.-. ...+.|.|+....-+. ..+|.+.|.|.+
T Consensus 24 ~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLae 103 (143)
T PF10358_consen 24 GKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAE 103 (143)
T ss_pred CEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHH
Confidence 3456666555543 344444333 55678999999986421 2457899988754444 599999999999
Q ss_pred ecc--CceeEEEEEccCCCCCCCCCCceEEEEeeeecCCCCCc
Q 002960 147 IAT--GELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPL 187 (862)
Q Consensus 147 l~~--g~~~~~w~~l~~~~~~~~~~~g~l~l~l~~~~~~~~~~ 187 (862)
+.. ......-++|... ....+.|+|++++.+...++.
T Consensus 104 y~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~~~~~~~ 142 (143)
T PF10358_consen 104 YANEDEEPITVRLLLKKC----KKSNATLSISISLSELREDPD 142 (143)
T ss_pred hhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEEECccCCC
Confidence 886 3456677777433 246899999999998776653
No 174
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=95.78 E-value=0.0079 Score=52.24 Aligned_cols=76 Identities=14% Similarity=0.339 Sum_probs=55.2
Q ss_pred cEEE--EEECCeEEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCCCeeeEEEEEeceeeccCceeEEE
Q 002960 82 PYVT--VVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRW 156 (862)
Q Consensus 82 pYv~--v~l~~~~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w 156 (862)
-|++ +.+.+.-..||.+.+.+.||+|+|+|.|.++-. ...+.|.|+. ..-+.+.||.+.+.+.++- .++.+.|
T Consensus 23 i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe~iG~~sL~l~s~g-eeE~~HW 100 (103)
T cd08684 23 IYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKRTIGECSLSLRTLS-TQETDHW 100 (103)
T ss_pred eEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccceeeEEEeecccCC-HHHhhhh
Confidence 3554 344665557999999999999999999998754 3456788877 3334799999999998755 3345677
Q ss_pred EEc
Q 002960 157 YDI 159 (862)
Q Consensus 157 ~~l 159 (862)
.++
T Consensus 101 ~e~ 103 (103)
T cd08684 101 LEI 103 (103)
T ss_pred hcC
Confidence 653
No 175
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=94.90 E-value=0.35 Score=48.37 Aligned_cols=140 Identities=19% Similarity=0.269 Sum_probs=93.1
Q ss_pred chHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCcccccccccC
Q 002960 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (862)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~~~~ 320 (862)
+.....+.+.|+.|++...+++|+-... -.-+.+.|..+..+||++|||- ++.-. +
T Consensus 38 e~il~~Li~~l~k~~ef~IsVaFit~sG---------------~sll~~~L~d~~~Kgvkgkilt-s~Yln-----f--- 93 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVAFITESG---------------LSLLFDLLLDLVNKGVKGKILT-SDYLN-----F--- 93 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEEEeeCcc---------------HHHHHHHHHHHhcCCceEEEec-ccccC-----c---
Confidence 4678899999999999998888764332 2577888999999999999996 43211 1
Q ss_pred CcccCCcHHHHhhhcCCCceEEecCCCCCCccccccccccccccccccceEEeccCCCCCCcceEEEEccccccCcccCC
Q 002960 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (862)
Q Consensus 321 ~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt 400 (862)
|++...++.+.-.+|+|++... + ...+|-|-.+.-.. ....|++|+.||+++-.-+
T Consensus 94 ----TdP~al~~Ll~~~nve~r~~~~-~--------------~~~fH~KgYiFe~~-----~~~taiiGSsNlt~sALt~ 149 (198)
T COG3886 94 ----TDPVALRKLLMLKNVELRVSTI-G--------------SANFHTKGYIFEHN-----TGITAIIGSSNLTDSALTV 149 (198)
T ss_pred ----cCHHHHHHHHhhhccceEEEec-C--------------ccccccceeEEEec-----ceEEEEEccchhhhhhccc
Confidence 2233445555556688876432 1 12467777664332 1247999999999955421
Q ss_pred CCcccccCCCcccCCCCCCCCCCCCCCCCCCCcc-eeeeEEeCHHHHHHHHHHHHHHH
Q 002960 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWH-DLHCRLDGPAAYDVLINFEQRWR 457 (862)
Q Consensus 401 ~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWh-Dv~~~v~Gpaa~dl~~~F~~rW~ 457 (862)
. ..|. -+...-.|..|..+...|+..|.
T Consensus 150 -n----------------------------~Ewn~k~s~~~~g~i~~~~k~~f~r~~~ 178 (198)
T COG3886 150 -N----------------------------EEWNLKVSSSKNGDIVKEVKVTFERQFQ 178 (198)
T ss_pred -C----------------------------HHHHhhhccccccchHHHHHHHHHHHHH
Confidence 1 1111 12333467789999999999987
No 176
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=94.66 E-value=0.12 Score=62.62 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.1
Q ss_pred ccccceEEeccCCCCCCcceEEEEccccccCcccC
Q 002960 365 THHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYD 399 (862)
Q Consensus 365 shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~D 399 (862)
-=|.|++|||++ .+.+|+.||.+.-.+
T Consensus 701 YVHsK~mIvDD~--------~vIIGSANINqRSm~ 727 (887)
T KOG1329|consen 701 YVHSKLMIVDDE--------YVIIGSANINQRSML 727 (887)
T ss_pred EEeeeeEEecCC--------EEEEeecccchhhcc
Confidence 359999999998 999999999994443
No 177
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.26 E-value=1.1 Score=44.41 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=44.6
Q ss_pred CCcEEEEEE--CCeEEE---eeeeccCCCCCceeeEEEEeecCC----CceEEEEEEecCCCC-----CeeeEEEEEece
Q 002960 80 SDPYVTVVV--PQATVA---RTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-----AQIIGTAAIPAH 145 (862)
Q Consensus 80 ~dpYv~v~l--~~~~~~---rT~vi~~t~~P~Wne~f~~~v~~~----~~~l~~~v~d~d~~~-----~~~iG~~~i~l~ 145 (862)
++.||++.+ ++..+. .|+-+.. .++.|||...|++.-. .+.|.|+||+...-. ...||.+.+++.
T Consensus 26 ~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LF 104 (158)
T cd08398 26 DKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLF 104 (158)
T ss_pred CeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEE
Confidence 678888876 443321 3443333 6799999999986533 467899999864321 257898888886
Q ss_pred e
Q 002960 146 T 146 (862)
Q Consensus 146 ~ 146 (862)
+
T Consensus 105 d 105 (158)
T cd08398 105 D 105 (158)
T ss_pred C
Confidence 5
No 178
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=93.99 E-value=0.8 Score=50.86 Aligned_cols=104 Identities=15% Similarity=0.236 Sum_probs=78.4
Q ss_pred CCcEEEEEECCeEEEeeeeccCCCCCceeeEEEEeecCC--------CceEEEEEEecCCC-C-CeeeEEEEEeceee--
Q 002960 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--------LSNLEIQVKDDDVF-G-AQIIGTAAIPAHTI-- 147 (862)
Q Consensus 80 ~dpYv~v~l~~~~~~rT~vi~~t~~P~Wne~f~~~v~~~--------~~~l~~~v~d~d~~-~-~~~iG~~~i~l~~l-- 147 (862)
..-.+...+++... -|-.+..+..|.||......+... ...|+++++..|.. + .+.||.+-++|...
T Consensus 18 ~~~vv~a~~ng~~l-~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~ 96 (340)
T PF12416_consen 18 HPIVVEAKFNGESL-ETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVV 96 (340)
T ss_pred ccEEEEEEeCCcee-eecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEcccccc
Confidence 45678888888765 777888899999999999987643 35689999988833 3 69999999999887
Q ss_pred -ccC--ceeEEEEEccCCCCCCCCCCceEEEEeeeecCCC
Q 002960 148 -ATG--ELISRWYDIIAPSGSPPKPGASIQLELKFTPCDK 184 (862)
Q Consensus 148 -~~g--~~~~~w~~l~~~~~~~~~~~g~l~l~l~~~~~~~ 184 (862)
..+ .....||+|++.+++-.+...+|.+++.......
T Consensus 97 ~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 97 PQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred ccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 444 4567899999875543345678888877665443
No 179
>PLN02352 phospholipase D epsilon
Probab=93.71 E-value=0.085 Score=63.66 Aligned_cols=65 Identities=18% Similarity=0.163 Sum_probs=36.7
Q ss_pred chHHHHHHHHHHhcccceEEEEEEeeceeEEee-cCCCCCCCCCcchHHHHHHHHHH--cCCEEEEEE
Q 002960 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIR-EQTRPLPRGGDLTLGELLKYKSE--EGVRVLLLV 305 (862)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R-~~~~~~~~g~~~~l~~lL~~kA~--rGV~VriLv 305 (862)
.+...+.++||++|||.|||+.=.|....+.-. +.......--+..|.+.|.+|.+ ++-+|+|++
T Consensus 452 rSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IVi 519 (758)
T PLN02352 452 RSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILI 519 (758)
T ss_pred hHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 467899999999999999997422211100000 00000000001356677766654 578899888
No 180
>PLN03008 Phospholipase D delta
Probab=92.22 E-value=0.15 Score=61.99 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=23.1
Q ss_pred ccccceEEeccCCCCCCcceEEEEccccccCccc
Q 002960 365 THHQKCVLVDTQASGNNRKITAFIGGIDLCDGRY 398 (862)
Q Consensus 365 shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~ 398 (862)
--|.|++|||++ ++.||+.||...-+
T Consensus 716 YvHsK~~ivDd~--------~~~iGSaN~n~RS~ 741 (868)
T PLN03008 716 YVHAKGMIVDDE--------YVLMGSANINQRSM 741 (868)
T ss_pred EEeeeEEEECCC--------EEEEeccccCHhhc
Confidence 469999999998 99999999999444
No 181
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=91.87 E-value=0.36 Score=51.44 Aligned_cols=128 Identities=18% Similarity=0.167 Sum_probs=80.1
Q ss_pred CCCCceeEeeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEE
Q 002960 6 DSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVT 85 (862)
Q Consensus 6 ~~~~~~~~~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~ 85 (862)
+.+-+++.-+.|.|.+.++++++|...-. -+| .+-+.||.
T Consensus 40 ~~d~l~~~s~tGiL~~H~~~GRGLr~~p~---------------------------~kg-------------lt~~~ycV 79 (442)
T KOG1452|consen 40 LLDHLRLVSSTGILYFHAYNGRGLRMTPQ---------------------------QKG-------------LTVCFYCV 79 (442)
T ss_pred ccceeeeecccceEEEEEecccccccChh---------------------------ccC-------------ceeeeeee
Confidence 34445556788999999999999963211 011 12689999
Q ss_pred EEECCeEEEeeeeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCC
Q 002960 86 VVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (862)
Q Consensus 86 v~l~~~~~~rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~ 164 (862)
+..+.+..+||+|.....--.|.|+|.+.+-.. ..+.+-|+.++... .++.-..-+.+..+.. +..++-+-+.
T Consensus 80 le~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-~vl~~lvySW~pq~RHKLC~~g~l~~~~v~r-qspd~~~Al~---- 153 (442)
T KOG1452|consen 80 LEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-EVLHYLVYSWPPQRRHKLCHLGLLEAFVVDR-QSPDRVVALY---- 153 (442)
T ss_pred eeecccCccccccccCCCCccchhhceeecccc-eeeeEEEeecCchhhccccccchhhhhhhhh-cCCcceeeee----
Confidence 999988778888876666668999999886543 24567777766554 4444333343333331 1122223321
Q ss_pred CCCCCCceEEEEeeeec
Q 002960 165 SPPKPGASIQLELKFTP 181 (862)
Q Consensus 165 ~~~~~~g~l~l~l~~~~ 181 (862)
.++.|++-+.+.+.+
T Consensus 154 --lePrgq~~~r~~~~D 168 (442)
T KOG1452|consen 154 --LEPRGQPPLRLPLAD 168 (442)
T ss_pred --cccCCCCceecccCC
Confidence 145788888887655
No 182
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=91.70 E-value=1 Score=45.23 Aligned_cols=67 Identities=13% Similarity=0.183 Sum_probs=44.0
Q ss_pred CCcEEEEEE--CCeEE---EeeeeccCCCCCceeeEEEEeecCC----CceEEEEEEecCCCC-----------------
Q 002960 80 SDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG----------------- 133 (862)
Q Consensus 80 ~dpYv~v~l--~~~~~---~rT~vi~~t~~P~Wne~f~~~v~~~----~~~l~~~v~d~d~~~----------------- 133 (862)
.+.||++.+ ++..+ ..|+.+.-+.++.|||.+.|++.-. .+.|.|+||+.....
T Consensus 27 ~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~ 106 (173)
T cd08693 27 MKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKD 106 (173)
T ss_pred ceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecccccccccccccccccccCc
Confidence 567888765 55433 2555555567799999999986432 467899999854211
Q ss_pred CeeeEEEEEecee
Q 002960 134 AQIIGTAAIPAHT 146 (862)
Q Consensus 134 ~~~iG~~~i~l~~ 146 (862)
...||.+.+++-+
T Consensus 107 ~~~ig~~n~~LFd 119 (173)
T cd08693 107 DNPIAWVNTMVFD 119 (173)
T ss_pred ceEEEEEeEEEEc
Confidence 3567777776654
No 183
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=90.59 E-value=0.72 Score=50.70 Aligned_cols=94 Identities=21% Similarity=0.345 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCcchhhhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEeeCCCcCC
Q 002960 606 ELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREE 685 (862)
Q Consensus 606 ~l~~~i~~~~~~~~~v~V~Ivlp~~Peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~l~~~e~ 685 (862)
.++.++.+|+++|+ +|.+++-...--+ +..++ +| .+.|.++|+.| +|++
T Consensus 51 ~iv~aLi~AA~nGK--~Vtv~vELkARFD-Ee~Ni----~W------------a~~Le~aGv~V-------iyG~----- 99 (352)
T PF13090_consen 51 PIVNALIEAAENGK--QVTVLVELKARFD-EENNI----HW------------AKRLEEAGVHV-------IYGV----- 99 (352)
T ss_dssp HHHHHHHHHHHTT---EEEEEESTTSSST-TCCCC----CC------------CHHHHHCT-EE-------EE-------
T ss_pred HHHHHHHHHHHcCC--EEEEEEEEecccc-HHHHh----HH------------HhhHHhcCeEE-------EcCC-----
Confidence 57788888888775 5666666543111 11222 34 56788999865 6755
Q ss_pred CCcccccCCCCcccccccccceeeEEEeEEEEEe-------eeEEEecCcCccccccCCCCCcceEEEeeCCccc
Q 002960 686 APKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD-------DEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (862)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVD-------D~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 753 (862)
....||||+++|= -+|+.+|+-|.|...-..- |.+++..-+++++
T Consensus 100 ---------------------~glKvHaK~~lI~R~e~~~~~~Y~hlgTGNyNe~TAr~Y--tD~~l~Ta~~~i~ 151 (352)
T PF13090_consen 100 ---------------------PGLKVHAKICLIVRREGGGLRRYAHLGTGNYNEKTARIY--TDLSLFTADPEIG 151 (352)
T ss_dssp ---------------------TT-EE--EEEEEEEEETTEEEEEEEEESS-SSTTHCCCE--EEEEEEE--HHHH
T ss_pred ---------------------CChhheeeEEEEEEEeCCcEEEEEEEcCCCcCccchhhe--ecceeecCCHHHH
Confidence 1458999999985 3799999999999988755 7788877776654
No 184
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=90.59 E-value=0.9 Score=45.01 Aligned_cols=68 Identities=25% Similarity=0.315 Sum_probs=51.0
Q ss_pred CCcEEEEEE--CCeEE---EeeeeccCCCCCceeeEEEEeecCC----CceEEEEEEecCCCC-CeeeEEEEEeceee
Q 002960 80 SDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTI 147 (862)
Q Consensus 80 ~dpYv~v~l--~~~~~---~rT~vi~~t~~P~Wne~f~~~v~~~----~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l 147 (862)
++.||++.+ ++..+ -.|..+.-+..+.|||...|++.-. .+.|.|+||+.+..+ ...||.+.+++.+-
T Consensus 30 ~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 30 SDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 889999977 44332 2666666677889999999986543 467899999976654 67899999988753
No 185
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=90.55 E-value=2.2 Score=41.85 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=70.4
Q ss_pred CCcEEEEEECCeEEEeeeeccCCCCCceeeEEEEeecCCC--------------ceEEEEEEecCCCC-CeeeEEEEEec
Q 002960 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL--------------SNLEIQVKDDDVFG-AQIIGTAAIPA 144 (862)
Q Consensus 80 ~dpYv~v~l~~~~~~rT~vi~~t~~P~Wne~f~~~v~~~~--------------~~l~~~v~d~d~~~-~~~iG~~~i~l 144 (862)
+-.++-+.+.+++ ++|+.+..+.+|.|+|.|.|++.... ..|.+.|--.|..+ ..++|...+.-
T Consensus 34 s~~~l~l~f~~QR-F~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldW 112 (156)
T PF15627_consen 34 STFTLHLHFRGQR-FRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDW 112 (156)
T ss_pred eEEEEEEEecCce-EecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehH
Confidence 3445556668877 59999999999999999999987552 34677776666665 58888888876
Q ss_pred eeeccCcee--EEEEEccCCCCCCCCCCceEEEEeeeecCC
Q 002960 145 HTIATGELI--SRWYDIIAPSGSPPKPGASIQLELKFTPCD 183 (862)
Q Consensus 145 ~~l~~g~~~--~~w~~l~~~~~~~~~~~g~l~l~l~~~~~~ 183 (862)
..+...+.. ..-..|.+...+.--..|-|.+++...|..
T Consensus 113 R~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 113 RKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred HHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 655533322 223344444433212589999999888854
No 186
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=89.53 E-value=2.1 Score=37.83 Aligned_cols=84 Identities=19% Similarity=0.279 Sum_probs=61.9
Q ss_pred CCcEEEEEECCeEEEeeeeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCCCeeeEEEEEeceeeccCceeEEEEEc
Q 002960 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDI 159 (862)
Q Consensus 80 ~dpYv~v~l~~~~~~rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (862)
++..+.+.+++..++.|.-.. ..+..|+++|.|.+.... +++|.|+-.|- ..+.|-.++.|++...+ .-+++
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdRsR-ELEI~VywrD~--RslCav~~lrLEd~~~~----~~~~l 80 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELERSR-ELEIAVYWRDW--RSLCAVKFLKLEDERHE----VQLDM 80 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEeeccc-EEEEEEEEecc--hhhhhheeeEhhhhccc----ceecc
Confidence 677889999999999988643 357789999999997654 78888877654 45777788888873322 12233
Q ss_pred cCCCCCCCCCCceEEEEeee
Q 002960 160 IAPSGSPPKPGASIQLELKF 179 (862)
Q Consensus 160 ~~~~~~~~~~~g~l~l~l~~ 179 (862)
.+.|.+...+.|
T Consensus 81 --------epqg~l~~ev~f 92 (98)
T cd08687 81 --------EPQLCLVAELTF 92 (98)
T ss_pred --------ccccEEEEEEEe
Confidence 467888888887
No 187
>PLN02270 phospholipase D alpha
Probab=89.00 E-value=1.4 Score=53.88 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEe
Q 002960 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVII 627 (862)
Q Consensus 560 ~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivl 627 (862)
..+.+.+..||.+|||+|||.-=-|.+.-...++....... -+..+..-|.++ +.++|+|+|++
T Consensus 208 ~~cwedi~~AI~~Ar~~IyI~GW~~d~~i~LvRd~~~p~~~--~~~~LGeLLk~K--A~eGV~V~iLv 271 (808)
T PLN02270 208 HRCWEDVFDAITNAKHLIYITGWSVYTEISLVRDSRRPKPG--GDVTIGELLKKK--ASEGVRVLLLV 271 (808)
T ss_pred hhhHHHHHHHHHhhhcEEEEEEeecCCCceEecCCCCCCCC--CcchHHHHHHHH--hcCCCEEEEEE
Confidence 45778899999999999999865554331111110000000 022444444444 45679999998
No 188
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=88.97 E-value=1.6 Score=43.61 Aligned_cols=68 Identities=15% Similarity=0.298 Sum_probs=57.4
Q ss_pred CCcEEEEEECCeEEEeeeeccCCCC--CceeeEEEEeecCCCceEEEEEEecCCCCCeeeEEEEEeceee
Q 002960 80 SDPYVTVVVPQATVARTRVLKNSQE--PVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTI 147 (862)
Q Consensus 80 ~dpYv~v~l~~~~~~rT~vi~~t~~--P~Wne~f~~~v~~~~~~l~~~v~d~d~~~~~~iG~~~i~l~~l 147 (862)
..-|++|.+.+..+.+|+...-+.+ =.+||.|.+.+..--+.|.++||.....++..|+++.+|+-..
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~ 106 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGS 106 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCC
Confidence 6789999999999999988655322 3578999999988778999999999887799999999998643
No 189
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=88.89 E-value=2.3 Score=41.89 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=47.5
Q ss_pred CCcEEEEEE--CCe---EEEeeeeccCCCCCceeeEEEEeecCC----CceEEEEEEecCCCC---CeeeEEEEEeceee
Q 002960 80 SDPYVTVVV--PQA---TVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG---AQIIGTAAIPAHTI 147 (862)
Q Consensus 80 ~dpYv~v~l--~~~---~~~rT~vi~~t~~P~Wne~f~~~v~~~----~~~l~~~v~d~d~~~---~~~iG~~~i~l~~l 147 (862)
.+.||++.+ ++. ....|.....+.++.|||...|++.-. .+.+.|+||+.+..+ ...||.+.+++-+.
T Consensus 28 ~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 28 LKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred eeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 567888866 443 223454444457899999999985432 467899999866543 58999999988763
No 190
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=88.09 E-value=3.9 Score=40.97 Aligned_cols=67 Identities=18% Similarity=0.305 Sum_probs=43.7
Q ss_pred CCcEEEEEE--CCeEEE---eeeecc--C--CCCCceeeEEEEeecCC----CceEEEEEEecCCCC----------Cee
Q 002960 80 SDPYVTVVV--PQATVA---RTRVLK--N--SQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG----------AQI 136 (862)
Q Consensus 80 ~dpYv~v~l--~~~~~~---rT~vi~--~--t~~P~Wne~f~~~v~~~----~~~l~~~v~d~d~~~----------~~~ 136 (862)
.+.||++.+ ++..+. .|+... + ...+.|||...|++.-. .+.|.|++|+....+ +..
T Consensus 29 ~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~ 108 (171)
T cd04012 29 EDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEE 108 (171)
T ss_pred ccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceE
Confidence 678888876 544332 343221 1 33578999999986432 467899999855432 468
Q ss_pred eEEEEEecee
Q 002960 137 IGTAAIPAHT 146 (862)
Q Consensus 137 iG~~~i~l~~ 146 (862)
||.+.+++-+
T Consensus 109 lG~~~~~LFd 118 (171)
T cd04012 109 LGWVSLPLFD 118 (171)
T ss_pred EEEEeEeeEc
Confidence 8888888765
No 191
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=87.13 E-value=5.3 Score=43.60 Aligned_cols=41 Identities=29% Similarity=0.293 Sum_probs=29.1
Q ss_pred eeEEEeEEEEE----eeeEEEecCcCccc-cccCCCCCcceEEEeeCC
Q 002960 708 MIYVHAKGMIV----DDEYVIMGSANINQ-RSMAGSKDTEIAMGSYQP 750 (862)
Q Consensus 708 ~iyvHSKlmIV----DD~~~iIGSANln~-RSm~g~~DsEi~v~i~d~ 750 (862)
.+-+|+|+.+. =+..++|||||+.. -.+. .+-.| ++...|+
T Consensus 78 ~~~~HgKlY~f~k~g~~~~a~IGSANfS~~~~~~-~~~~E-~~v~~D~ 123 (296)
T PF09565_consen 78 DPPYHGKLYIFSKNGKPFRAYIGSANFSQINGFT-RRQYE-AMVTCDP 123 (296)
T ss_pred CCCcccEEEEEecCCCceEEEEeecccccccccc-cccee-EEEecCh
Confidence 35789999999 35689999999988 3332 24478 5555565
No 192
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=84.42 E-value=4.6 Score=39.04 Aligned_cols=67 Identities=19% Similarity=0.282 Sum_probs=46.4
Q ss_pred CcEEEEEE--CCe----EEEeeeeccCC-CCCceeeEEEEeecC----CCceEEEEEEecCCCC-C----eeeEEEEEec
Q 002960 81 DPYVTVVV--PQA----TVARTRVLKNS-QEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-A----QIIGTAAIPA 144 (862)
Q Consensus 81 dpYv~v~l--~~~----~~~rT~vi~~t-~~P~Wne~f~~~v~~----~~~~l~~~v~d~d~~~-~----~~iG~~~i~l 144 (862)
+.||++.+ ++. .+..|+...-+ .++.|||...|++.- ..+.+.|+|+..+... . ..||.+.+++
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 45777766 443 33366666666 899999999998542 2567899999876655 3 6999999998
Q ss_pred eee
Q 002960 145 HTI 147 (862)
Q Consensus 145 ~~l 147 (862)
-+.
T Consensus 83 Fd~ 85 (142)
T PF00792_consen 83 FDY 85 (142)
T ss_dssp B-T
T ss_pred ECC
Confidence 765
No 193
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=83.74 E-value=2.2 Score=50.27 Aligned_cols=93 Identities=19% Similarity=0.339 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHcCCCeEEEEEecCCCCCCCC-CcchhhhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEeeCCCcC
Q 002960 606 ELALKIASKIRANERFAVYVIIPMWPEGDPK-TNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKRE 684 (862)
Q Consensus 606 ~l~~~i~~~~~~~~~v~V~Ivlp~~Peg~~~-~~~~~~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~l~~~e 684 (862)
.|..++..|+++|+. |.+|+-... .-| ..+ ++| .+.|.++|+.| +|++
T Consensus 385 pIV~ALi~AA~nGKq--VtvlVELkA--RFDEE~N----I~W------------Ak~LE~AGvhV-------vyG~---- 433 (696)
T COG0855 385 PIVRALIDAAENGKQ--VTVLVELKA--RFDEEAN----IHW------------AKRLERAGVHV-------VYGV---- 433 (696)
T ss_pred HHHHHHHHHHHcCCe--EEEEEEEhh--hcChhhh----hHH------------HHHHHhCCcEE-------Eecc----
Confidence 477888888888865 455554321 111 111 223 67889999865 6754
Q ss_pred CCCcccccCCCCcccccccccceeeEEEeEEEEEee-------eEEEecCcCccccccCCCCCcceEEEeeCCccc
Q 002960 685 EAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDD-------EYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (862)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD-------~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 753 (862)
....+|+|+++|=. +|+-+|+-|.|..+-..- |.+++..-|++++
T Consensus 434 ----------------------~glKtHAKm~lVvRrE~~~lrrY~HlGTGNYn~~TAriY--TD~sl~Tad~~i~ 485 (696)
T COG0855 434 ----------------------VGLKTHAKMLLVVRREGGKLRRYVHLGTGNYNPKTARLY--TDLSLLTADPEIG 485 (696)
T ss_pred ----------------------cceeeeeeEEEEEEecCCcEEEEEEecCCCCCccceeee--eechhccCCHHHH
Confidence 13578999998843 699999999999988655 6677666666543
No 194
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=80.82 E-value=6 Score=40.11 Aligned_cols=55 Identities=18% Similarity=0.220 Sum_probs=33.5
Q ss_pred EEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC----CeeeEEEEEecee
Q 002960 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG----AQIIGTAAIPAHT 146 (862)
Q Consensus 92 ~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~----~~~iG~~~i~l~~ 146 (862)
....|.|...+.+|.|+|+|.+.++.. ...|.|++++...-. +..+|-+.+||-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 345888888899999999999998865 356899999865432 2688888888765
No 195
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=80.02 E-value=13 Score=34.18 Aligned_cols=93 Identities=12% Similarity=0.171 Sum_probs=52.6
Q ss_pred EEEEEECCeEEEeeeeccCCCCCceeeEEEEeecCC--------CceEEEEEEecCCCCCeeeEEEEEeceeecc--Cce
Q 002960 83 YVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--------LSNLEIQVKDDDVFGAQIIGTAAIPAHTIAT--GEL 152 (862)
Q Consensus 83 Yv~v~l~~~~~~rT~vi~~t~~P~Wne~f~~~v~~~--------~~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~--g~~ 152 (862)
||++.+-+-....|.++. ..+|.+|-+-.+.|.-. ...+.++++..-......+|.+.+++..+.. ++.
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence 677777555556788876 78999997777776654 3568899988653336999999999998874 335
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEeee
Q 002960 153 ISRWYDIIAPSGSPPKPGASIQLELKF 179 (862)
Q Consensus 153 ~~~w~~l~~~~~~~~~~~g~l~l~l~~ 179 (862)
+..-..+.+.+|+ .-|.|...++.
T Consensus 81 i~~~~~l~g~~~~---~~g~l~y~~rl 104 (107)
T PF11618_consen 81 IHGSATLVGVSGE---DFGTLEYWIRL 104 (107)
T ss_dssp EEEEEEE-BSSS----TSEEEEEEEEE
T ss_pred EEEEEEEeccCCC---eEEEEEEEEEe
Confidence 7777778777765 57888877764
No 196
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=77.94 E-value=1.4 Score=52.23 Aligned_cols=96 Identities=14% Similarity=0.052 Sum_probs=64.9
Q ss_pred CCcEEEEEECCeEEEeeeeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeecc-CceeEEEE
Q 002960 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT-GELISRWY 157 (862)
Q Consensus 80 ~dpYv~v~l~~~~~~rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~-g~~~~~w~ 157 (862)
.+||+.|.+.....+.+.+.+.+..|.|+|+|.+.+. ....+.+.|+...... +.+...+.+-.+++.. ....+.|.
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~ 106 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV-AGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWV 106 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeeeee-cCCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhcc
Confidence 7999999998766667777778999999999999944 4456777887765444 4444444444444432 12345687
Q ss_pred EccCCCCCCCCCCceEEEEeeeecCCC
Q 002960 158 DIIAPSGSPPKPGASIQLELKFTPCDK 184 (862)
Q Consensus 158 ~l~~~~~~~~~~~g~l~l~l~~~~~~~ 184 (862)
.+ ++.|++...+.++....
T Consensus 107 ~~--------~~~g~~~~~~~~~~~~~ 125 (694)
T KOG0694|consen 107 LI--------EELGTLLKPAALTGTLE 125 (694)
T ss_pred cc--------ccccceeeeecccCcCC
Confidence 75 34577777777766544
No 197
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=76.37 E-value=21 Score=36.08 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=33.4
Q ss_pred CcEEEEEE--CCeEE--EeeeeccCCCCCceeeEEEEeecCC----CceEEEEEEec
Q 002960 81 DPYVTVVV--PQATV--ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDD 129 (862)
Q Consensus 81 dpYv~v~l--~~~~~--~rT~vi~~t~~P~Wne~f~~~v~~~----~~~l~~~v~d~ 129 (862)
..||++.+ ++... .+|.....+.+|.|||...|++.-. .+.|.|+||+.
T Consensus 31 ~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~ 87 (178)
T cd08399 31 TVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG 87 (178)
T ss_pred EEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEE
Confidence 35677654 44321 2566666678899999988886533 46789999985
No 198
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=75.28 E-value=18 Score=32.78 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=34.1
Q ss_pred CCcEEEEEE--CCeEEE---eeeeccCCCCCceeeEEEEeecCC----CceEEEEEEec
Q 002960 80 SDPYVTVVV--PQATVA---RTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDD 129 (862)
Q Consensus 80 ~dpYv~v~l--~~~~~~---rT~vi~~t~~P~Wne~f~~~v~~~----~~~l~~~v~d~ 129 (862)
++.||++.+ ++..+. .|..+.-+..+.|||-..|++.-. .+.+.|++|+.
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEV 90 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEe
Confidence 478888876 443321 555555466789999998885533 46689999974
No 199
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=74.95 E-value=6.5 Score=39.96 Aligned_cols=52 Identities=23% Similarity=0.434 Sum_probs=38.3
Q ss_pred EEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC---CeeeEEEEEec
Q 002960 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG---AQIIGTAAIPA 144 (862)
Q Consensus 93 ~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~---~~~iG~~~i~l 144 (862)
..+|-|...+.+|.|+|++.+.++.. ...|.|++++...-. ...+|-+.+||
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 45899999999999999999998754 467888887743322 24566666655
No 200
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=74.28 E-value=2.5 Score=51.18 Aligned_cols=119 Identities=19% Similarity=0.315 Sum_probs=73.1
Q ss_pred eeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---
Q 002960 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (862)
Q Consensus 14 ~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~--- 90 (862)
++.|.+++.+.+|.+|.+. ...||+..++.
T Consensus 756 l~ygflh~~vhsat~lkqs-----------------------------------------------~~lY~Td~v~e~~~ 788 (1112)
T KOG4269|consen 756 LLYGFLHVIVHSATGLKQS-----------------------------------------------RNLYCTDEVDEFGY 788 (1112)
T ss_pred ccccceeeeeccccccccc-----------------------------------------------cceeeehhhhhhcc
Confidence 4569999999999888631 56788877632
Q ss_pred -eEEEeeeeccCCCCCceeeEEEEeecCCCceEEEEEEecC----------CCC-CeeeEEEEEeceeeccCceeEEEEE
Q 002960 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDD----------VFG-AQIIGTAAIPAHTIATGELISRWYD 158 (862)
Q Consensus 91 -~~~~rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d----------~~~-~~~iG~~~i~l~~l~~g~~~~~w~~ 158 (862)
...++|+++.+|..|.||+.|++++....+ ..+..++++ ... +...|+..+.+...... -..|+.
T Consensus 789 ~~s~~st~~iadT~~~~~npe~hv~~~~sqS-~r~~~~ek~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~~~--d~d~~t 865 (1112)
T KOG4269|consen 789 FVSKASTRVIADTAEPQWNPEKHVPVIESQS-SRLEKTEKSTPVEKLIDSHSQNSQNEEKRSRMKLDPQPHH--DADWYT 865 (1112)
T ss_pred ccccccceeeecccCCCCChhcccchhhccc-cchhhhcccchHHHhhhccchhhcccccccccccCccccc--cccCcc
Confidence 345799999999999999999999765431 123333222 222 44555555544322211 123544
Q ss_pred ccCCCCCCCCCCceEEEEeeeecCCCCCc
Q 002960 159 IIAPSGSPPKPGASIQLELKFTPCDKNPL 187 (862)
Q Consensus 159 l~~~~~~~~~~~g~l~l~l~~~~~~~~~~ 187 (862)
-... ..+..+...|.|.+......
T Consensus 866 ~v~~-----~n~~~ve~~v~~ssss~Ss~ 889 (1112)
T KOG4269|consen 866 QVID-----MNGIVVETSVKFSSSSTSSK 889 (1112)
T ss_pred Chhh-----hcCcceeeeEEecccccccc
Confidence 2211 23567778888888665443
No 201
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=72.26 E-value=34 Score=34.63 Aligned_cols=52 Identities=15% Similarity=0.074 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecC
Q 002960 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPM 629 (862)
Q Consensus 560 ~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~ 629 (862)
.-|+..++..|+.|+.|..+. -|+..+.. ..+...+..+ .++|++++|+...
T Consensus 38 e~il~~Li~~l~k~~ef~IsV--aFit~sG~--------------sll~~~L~d~--~~Kgvkgkilts~ 89 (198)
T COG3886 38 EKILPRLIDELEKADEFEISV--AFITESGL--------------SLLFDLLLDL--VNKGVKGKILTSD 89 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEE--EEeeCccH--------------HHHHHHHHHH--hcCCceEEEeccc
Confidence 468999999999999998887 45543210 1222233444 4577999999874
No 202
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=70.92 E-value=9.9 Score=38.82 Aligned_cols=54 Identities=13% Similarity=0.226 Sum_probs=40.4
Q ss_pred EEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-----CeeeEEEEEece
Q 002960 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-----AQIIGTAAIPAH 145 (862)
Q Consensus 92 ~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-----~~~iG~~~i~l~ 145 (862)
...+|-|.....+|.|+|++.+.++.. ...|.|++++..... ...+|-+.+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 446899988999999999999998754 567899997744321 356777777763
No 203
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=70.80 E-value=5.4 Score=46.47 Aligned_cols=85 Identities=21% Similarity=0.349 Sum_probs=58.7
Q ss_pred eEEEeeeeccCCCCCceeeEEEEeecCC-CceEEEEEEecCCC----C-CeeeEEEEEeceeeccCceeEEEEEccCCCC
Q 002960 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVF----G-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (862)
Q Consensus 91 ~~~~rT~vi~~t~~P~Wne~f~~~v~~~-~~~l~~~v~d~d~~----~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~ 164 (862)
..++||.++.+.+||.|-+.|.+....+ ...++|+++|.+.. . .+|+|++...+..+.+...... ++....+
T Consensus 40 ~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~--~l~~~~~ 117 (529)
T KOG1327|consen 40 EEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTG--PLLLKPG 117 (529)
T ss_pred ccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhh--hhhcccC
Confidence 3567999999999999999999886655 46789999987654 2 5999999999988774332212 2222222
Q ss_pred CCCCCCceEEEEee
Q 002960 165 SPPKPGASIQLELK 178 (862)
Q Consensus 165 ~~~~~~g~l~l~l~ 178 (862)
+. ...|.|.+++.
T Consensus 118 ~~-~~~g~iti~ae 130 (529)
T KOG1327|consen 118 KN-AGSGTITISAE 130 (529)
T ss_pred cc-CCcccEEEEee
Confidence 22 34566666654
No 204
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=65.12 E-value=4.5 Score=47.09 Aligned_cols=41 Identities=17% Similarity=0.205 Sum_probs=28.7
Q ss_pred ceeeEEEeEEEEEee-------eEEEecCcCccccccCCC----------CCcceEEEe
Q 002960 706 RFMIYVHAKGMIVDD-------EYVIMGSANINQRSMAGS----------KDTEIAMGS 747 (862)
Q Consensus 706 ~~~iyvHSKlmIVDD-------~~~iIGSANln~RSm~g~----------~DsEi~v~i 747 (862)
+.....|+|+++... .|+++|||||..-.+. . +..|++|++
T Consensus 344 R~~~~pH~K~y~~~~~~~~~~~~W~~lgShNLS~aAWG-~~~~~~~~l~i~nyElGVl~ 401 (443)
T PF06087_consen 344 RSRAPPHIKTYMRFSKNDFKSLGWFYLGSHNLSKAAWG-KRSKNGSQLSIRNYELGVLF 401 (443)
T ss_dssp TTTS-B--EEEEEEE-TTTSEECEEEEES--BSHHHH--EEETTTTCCEESSBEEEEEE
T ss_pred CCCcCcceEEEEEecCCCCCccceEEeCcccCCHHHhc-ccccCCceeeecceEEEEEE
Confidence 345678999999987 5999999999877663 3 578999998
No 205
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=63.21 E-value=9.4 Score=42.56 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecCC
Q 002960 561 SIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMW 630 (862)
Q Consensus 561 sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~ 630 (862)
..++.+.+.|..||+.|+|.+-|+-.. ..+++..+..++..++.++|-|++.-.
T Consensus 39 ~fy~~lk~~I~~aq~Ri~lasLYlG~~----------------E~elv~cl~~aL~~~~~L~v~iLlD~~ 92 (469)
T KOG3964|consen 39 EFYQRLKKLIKKAQRRIFLASLYLGKL----------------ERELVDCLSNALEKNPSLKVSILLDFL 92 (469)
T ss_pred HHHHHHHHHHHHhhheeeeeeeccchh----------------HHHHHHHHHHHhccCCCcEEEeehhhh
Confidence 467889999999999999999887531 468889999999999999999999754
No 206
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=60.53 E-value=30 Score=34.93 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=32.1
Q ss_pred EEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecC
Q 002960 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDD 130 (862)
Q Consensus 92 ~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d 130 (862)
..+.|.|...+.+|.|+|++.+.++-. ...|.|+.++-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs 95 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHIS 95 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEee
Confidence 457899999999999999999998755 456888888743
No 207
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=60.18 E-value=10 Score=43.25 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=36.6
Q ss_pred eeEEEEEecee-eccCceeEEEEEccCCCCCCCCCCceEEEEeeeecCCCC
Q 002960 136 IIGTAAIPAHT-IATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKN 185 (862)
Q Consensus 136 ~iG~~~i~l~~-l~~g~~~~~w~~l~~~~~~~~~~~g~l~l~l~~~~~~~~ 185 (862)
++|.+.||++. +..+...+.|||+.+...+. .+.|.| ++++|.....-
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~-~~~~~l-lk~~~~~~~VL 49 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKS-VGEGLI-IKVSSEENFVL 49 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCC-cCcceE-EEEEeeeceec
Confidence 48999999999 56778899999998876654 345666 78887765433
No 208
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=60.06 E-value=23 Score=35.70 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=36.3
Q ss_pred eeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC------CeeeEEEEEecee
Q 002960 95 RTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG------AQIIGTAAIPAHT 146 (862)
Q Consensus 95 rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~------~~~iG~~~i~l~~ 146 (862)
-|.++....+|.|+|+|.+.++.. ...|.|++++.+.-. ...+|-+.+||-+
T Consensus 55 ~~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 344444449999999999998654 466899998855321 4677777777653
No 209
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=58.94 E-value=29 Score=36.53 Aligned_cols=51 Identities=20% Similarity=0.187 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecC
Q 002960 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPM 629 (862)
Q Consensus 559 e~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~ 629 (862)
..+|.+-..++|++|++.|||.... +. -.++...|.+|.++ ||+|++++..
T Consensus 8 ~~~I~~~i~elI~~Ae~eI~is~~~---------~~---------l~~l~~~L~~a~~r--GV~V~li~~~ 58 (233)
T PF11495_consen 8 RETILERIRELIENAESEIYISIPP---------EF---------LEELRDELEEAVDR--GVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHHC-SSEEEEEE-G---------GG---------HHHHHHHHHHHHHT--T-EEEEEESS
T ss_pred HHHHHHHHHHHHHHhheEEEEEcCH---------HH---------HHHHHHHHHHHHHC--CCEEEEEEeC
Confidence 4789999999999999999998532 11 23455666677554 5999999874
No 210
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=54.64 E-value=1e+02 Score=35.01 Aligned_cols=106 Identities=21% Similarity=0.348 Sum_probs=61.4
Q ss_pred CCcEEEEEECCeEEEeeeecc---C-CCCC-c---eeeEEEEee-------cCC-----CceEEEEEEecC-----CC--
Q 002960 80 SDPYVTVVVPQATVARTRVLK---N-SQEP-V---WNEHFNIPL-------AHP-----LSNLEIQVKDDD-----VF-- 132 (862)
Q Consensus 80 ~dpYv~v~l~~~~~~rT~vi~---~-t~~P-~---Wne~f~~~v-------~~~-----~~~l~~~v~d~d-----~~-- 132 (862)
+..||+|.|.+-.. +|..+. . +.+| . ---.|++.- ..+ ...|+|.||.-. .+
T Consensus 36 spCfC~IrL~~fP~-Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 36 SPCFCEIRLKGFPS-QTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCeEEEEecCCCCc-cceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 67799999987554 333222 1 1111 1 124556541 111 146899999743 22
Q ss_pred CCeeeEEEEEeceee-ccCce---eEEEEEccCCCCC-CCCCCceEEEEeeeecCCCCCccc
Q 002960 133 GAQIIGTAAIPAHTI-ATGEL---ISRWYDIIAPSGS-PPKPGASIQLELKFTPCDKNPLYR 189 (862)
Q Consensus 133 ~~~~iG~~~i~l~~l-~~g~~---~~~w~~l~~~~~~-~~~~~g~l~l~l~~~~~~~~~~~~ 189 (862)
+.++||++.+||.-- ..+.. ..+|..|-....+ ......+|||.++-.| ||.|.
T Consensus 115 ~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~Ep---DPRfV 173 (460)
T PF06219_consen 115 SGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEP---DPRFV 173 (460)
T ss_pred cceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccC---CCeeE
Confidence 369999999999721 22332 4689998333221 1125789999998655 56554
No 211
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=53.42 E-value=53 Score=33.40 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=32.4
Q ss_pred EEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecC
Q 002960 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDD 130 (862)
Q Consensus 92 ~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d 130 (862)
..+.|.|...+.+|.|.|++-+.++-. ...|.|+.++.+
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 457899999999999999999997754 467889998854
No 212
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=46.72 E-value=1.2e+02 Score=33.36 Aligned_cols=93 Identities=11% Similarity=0.189 Sum_probs=63.7
Q ss_pred CCcEEEEEECCeEEEeeeeccCCCCC--ceeeEEEEeecCCCceEEEEEEecCCCCCeeeEEEEEecee-ec-cCceeEE
Q 002960 80 SDPYVTVVVPQATVARTRVLKNSQEP--VWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHT-IA-TGELISR 155 (862)
Q Consensus 80 ~dpYv~v~l~~~~~~rT~vi~~t~~P--~Wne~f~~~v~~~~~~l~~~v~d~d~~~~~~iG~~~i~l~~-l~-~g~~~~~ 155 (862)
...|+++..+...+ +|..+.-+..- .-.|+..+.+..-...|.+.|+-....+...||.+.|.+.. +. ..-+...
T Consensus 74 khiyIef~~Gr~d~-TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLvkk~hIgdI~InIn~dIIdk~FPKnk 152 (508)
T PTZ00447 74 KHIYIIFSTDKYDF-TTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLTKKVHIGQIKIDINASVISKSFPKNE 152 (508)
T ss_pred eeEEEEEEcCceEE-EccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccccceeEEEEEEecccHHHHhccCCccc
Confidence 45788888877654 66555443332 23467777777667789999999988889999999998864 33 3345678
Q ss_pred EEEccCCCCCCCCCCceEEEEe
Q 002960 156 WYDIIAPSGSPPKPGASIQLEL 177 (862)
Q Consensus 156 w~~l~~~~~~~~~~~g~l~l~l 177 (862)
||-+ ..+|+. .++|.+|+
T Consensus 153 Wy~c-~kDGq~---~cRIqLSF 170 (508)
T PTZ00447 153 WFVC-FKDGQE---ICKVQMSF 170 (508)
T ss_pred eEEE-ecCCce---eeeEEEEe
Confidence 9998 555542 45555554
No 213
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=42.27 E-value=88 Score=29.43 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=44.7
Q ss_pred cchHHHHHHHHHHhcccceEEEEEEeeceeEEeecC-CC--CCCCCCcchHHHHHHHHHHcCCEEEEE
Q 002960 240 PGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQ-TR--PLPRGGDLTLGELLKYKSEEGVRVLLL 304 (862)
Q Consensus 240 ~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~-~~--~~~~g~~~~l~~lL~~kA~rGV~VriL 304 (862)
|+++|..+.-|+-.|.-.-...-|+.....+|.+.. .. ..+. -.+|.++.+.+.+.||++++-
T Consensus 16 ~~r~ya~f~~A~~a~smg~dV~iF~t~dG~~l~~K~~~ekik~~~--~~~l~~~~~~a~e~GVk~yvC 81 (120)
T COG2044 16 PERAYAPFVMATAAASMGYDVTIFFTMDGVTLVKKKVAEKIKHPN--FPPLEELIKQAIEAGVKIYVC 81 (120)
T ss_pred HHHHHhHHHHHHHHHhCCCceEEEEEeccceeeeecchhhhcCCC--CCCHHHHHHHHHHcCCEEEEE
Confidence 367888888887777655555556667777877532 21 1222 279999999999999998875
No 214
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=39.32 E-value=3.2e+02 Score=27.13 Aligned_cols=65 Identities=23% Similarity=0.375 Sum_probs=41.7
Q ss_pred EEeeeeccCC-----CCCceeeEEEEeecCC----CceEEEEEEecCCCC-CeeeEEEEEeceeeccCc---eeEEEEE
Q 002960 93 VARTRVLKNS-----QEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE---LISRWYD 158 (862)
Q Consensus 93 ~~rT~vi~~t-----~~P~Wne~f~~~v~~~----~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~---~~~~w~~ 158 (862)
.+.|.+.+.+ ..=.||-.|.+.+... -..|.|+|+..|..+ +.+.|-..+.+-.- .|. .+..|-|
T Consensus 40 ~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr~~~~GYG~~~lP~~-pG~h~~~v~~wrP 117 (168)
T PF07162_consen 40 EGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGRDRVEGYGFCHLPTQ-PGRHEVEVPTWRP 117 (168)
T ss_pred eEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEEEEEEcccCCeEEeEEeEEEeCCC-CceEEEEEEEEee
Confidence 4677766532 3457998888875543 257999999999998 67776655544322 232 2445666
No 215
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=35.74 E-value=2.1e+02 Score=34.00 Aligned_cols=93 Identities=16% Similarity=0.391 Sum_probs=61.7
Q ss_pred cEEEEEECCeEEEeeeeccCCCCCceeeEEEEeecCCCceEEEEEEecCC--C--CCeeeEEEEEeceeeccCceeEEEE
Q 002960 82 PYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDV--F--GAQIIGTAAIPAHTIATGELISRWY 157 (862)
Q Consensus 82 pYv~v~l~~~~~~rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~--~--~~~~iG~~~i~l~~l~~g~~~~~w~ 157 (862)
.||+..+.+.+. +|.-. ....|.|...=.|...|+...+.+.++.... + -|+-+|++-+-.. ........|+
T Consensus 362 vyctmevegekl-qtdqa-easkp~wgtqgdfstthplpvvkvklftestgvlaledkelgrvil~pt--pns~ks~ewh 437 (1218)
T KOG3543|consen 362 VYCTMEVEGEKL-QTDQA-EASKPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALEDKELGRVILQPT--PNSAKSPEWH 437 (1218)
T ss_pred EEEEEEeccccc-ccchh-hhcCCCCCcCCCcccCCCCceeEEEEEeecceeEEeechhhCeEEEecC--CCCcCCccce
Confidence 699999998776 44422 3457999999899999998888888887643 2 2678898877332 1122235788
Q ss_pred EccCCCCCCCCCCceEEEEeee
Q 002960 158 DIIAPSGSPPKPGASIQLELKF 179 (862)
Q Consensus 158 ~l~~~~~~~~~~~g~l~l~l~~ 179 (862)
.+.-+...+ ...-+|.+.++.
T Consensus 438 ~mtvpknsq-dqdlkiklavrm 458 (1218)
T KOG3543|consen 438 TMTVPKNSQ-DQDLKIKLAVRM 458 (1218)
T ss_pred eeecCCCCc-CccceEEEEEec
Confidence 875553322 345566666653
No 216
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=26.79 E-value=42 Score=39.08 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=23.0
Q ss_pred eEEEeEEEEE---ee-eEEEecCcCccccccCCCCCcceEEEe
Q 002960 709 IYVHAKGMIV---DD-EYVIMGSANINQRSMAGSKDTEIAMGS 747 (862)
Q Consensus 709 iyvHSKlmIV---DD-~~~iIGSANln~RSm~g~~DsEi~v~i 747 (862)
.--|||+||. |+ --++|.||||...-+.. -|=++-+
T Consensus 100 g~hHsKm~ll~y~~~~lRVvI~TaNl~~~Dw~~---~~q~vw~ 139 (443)
T PF06087_consen 100 GTHHSKMMLLFYEDGSLRVVIPTANLTPYDWNN---KTQGVWI 139 (443)
T ss_dssp --B--EEEEEEETTCEEEEEEESS-BSHHHHCS---SB-EEEE
T ss_pred ccccceeEEEEeCCccEEEEEECCCCCHHHHCC---cceeEEE
Confidence 3569999998 66 78999999998888742 4444444
No 217
>PF13289 SIR2_2: SIR2-like domain
Probab=24.56 E-value=2.3e+02 Score=26.56 Aligned_cols=64 Identities=20% Similarity=0.455 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHc-C---CEEEEEEeCCCCcccccccc
Q 002960 243 CWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEE-G---VRVLLLVWDDKTSHDKLGVK 318 (862)
Q Consensus 243 ~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~r-G---V~VriLvwd~~~s~~~~~~~ 318 (862)
.|...+.++..++..|+| ||++.+ .-+..+|..+.+. | -++++++.+..
T Consensus 75 ~~~~~l~~~l~~~~~lfi-Gys~~D-----------------~~i~~~l~~~~~~~~~~~~~~~~v~~~~~--------- 127 (143)
T PF13289_consen 75 WFPNFLRSLLRSKTLLFI-GYSFND-----------------PDIRQLLRSALENSGKSRPRHYIVIPDPD--------- 127 (143)
T ss_pred HHHHHHHHHHcCCCEEEE-EECCCC-----------------HHHHHHHHHHHHhccCCCccEEEEEcCCc---------
Confidence 355555666666766655 998754 3455566554433 3 36777774332
Q ss_pred cCCcccCCcHHHHhhhcCCCceE
Q 002960 319 TPGVMATHDEETKKFFKHSSVNC 341 (862)
Q Consensus 319 ~~~~~~~~~~~~~~~l~~~~v~v 341 (862)
++...++++..||++
T Consensus 128 --------~~~~~~~~~~~~i~~ 142 (143)
T PF13289_consen 128 --------DENEREFLEKYGIEV 142 (143)
T ss_pred --------hHHHHHHHHHcCCEE
Confidence 134566777788875
No 218
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=23.73 E-value=1.2e+02 Score=32.45 Aligned_cols=50 Identities=38% Similarity=0.317 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeC
Q 002960 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD 307 (862)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd 307 (862)
...-+-+.+.|+.|+++|.++.+ .++ -..+.+.|.++.+|||.|.+++..
T Consensus 119 ~~i~~~~~e~i~~a~~ei~~~~~---~e~--------------~~~l~~~l~~~~~rgv~v~i~~~~ 168 (247)
T COG1378 119 EEIIEKIKEVINEAEKEIIIVLP---YEI--------------FKELKEPLIRALKRGVRVLILVFP 168 (247)
T ss_pred HHHHHHHHHHHHhhhcEEEEEeC---HHH--------------HHHhHHHHHHHHHccCeEEEEecc
Confidence 56788899999999999999876 221 257889999999999999999843
Done!