Query 002960
Match_columns 862
No_of_seqs 502 out of 3697
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 08:06:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002960.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002960hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v0w_A Phospholipase D; hydrol 100.0 3.5E-34 1.2E-38 334.1 27.7 388 241-753 65-476 (506)
2 3hsi_A Phosphatidylserine synt 100.0 1.4E-31 4.8E-36 305.9 19.7 360 209-751 24-401 (458)
3 1xdp_A Polyphosphate kinase; P 99.8 1.2E-20 4.1E-25 223.2 19.2 140 241-459 346-494 (687)
4 2o8r_A Polyphosphate kinase; s 99.8 7E-19 2.4E-23 206.4 23.7 267 241-753 351-639 (705)
5 2fk9_A Protein kinase C, ETA t 99.8 9.3E-20 3.2E-24 178.2 12.8 129 11-180 23-156 (157)
6 2dmh_A Myoferlin; beta-sandwic 99.8 3.2E-18 1.1E-22 164.4 15.3 124 15-184 5-136 (140)
7 1gmi_A Protein kinase C, epsil 99.8 3.3E-18 1.1E-22 163.6 13.9 129 14-182 3-134 (136)
8 2ep6_A MCTP2 protein; beta san 99.8 3.1E-18 1.1E-22 163.1 13.6 127 9-181 5-132 (133)
9 3b7y_A E3 ubiquitin-protein li 99.8 5.9E-18 2E-22 165.1 15.8 124 15-181 18-153 (153)
10 1wfj_A Putative elicitor-respo 99.8 3.6E-18 1.2E-22 163.2 11.8 124 15-185 8-134 (136)
11 3kwu_A MUNC13-1; calcium bindi 99.7 3.4E-17 1.2E-21 158.8 18.7 120 15-180 15-146 (148)
12 3m7f_B E3 ubiquitin-protein li 99.7 2.6E-17 9E-22 164.6 16.1 124 16-182 7-142 (176)
13 1rlw_A Phospholipase A2, CALB 99.7 4.1E-17 1.4E-21 153.6 13.2 118 16-181 2-125 (126)
14 2nq3_A Itchy homolog E3 ubiqui 99.7 1.3E-16 4.4E-21 159.0 13.8 127 13-184 32-164 (173)
15 3pyc_A E3 ubiquitin-protein li 99.7 2.1E-16 7.1E-21 150.2 14.6 120 17-179 5-131 (132)
16 4ggj_A Mitochondrial cardiolip 99.7 2.1E-16 7.3E-21 160.7 11.5 134 241-461 45-179 (196)
17 2b3r_A Phosphatidylinositol-4- 99.7 7.6E-16 2.6E-20 146.9 14.1 112 7-161 10-130 (134)
18 1rsy_A Synaptotagmin I; calciu 99.6 1.1E-15 3.6E-20 149.1 11.7 105 15-161 40-150 (152)
19 1a25_A CALB, protein kinase C 99.6 1.7E-15 5.7E-20 147.1 12.7 107 13-162 27-140 (149)
20 2q3x_A Regulating synaptic mem 99.6 1.8E-15 6.2E-20 150.5 12.7 107 14-162 27-140 (171)
21 3f04_A Synaptotagmin-1; C2A, c 99.6 1.2E-15 4E-20 147.1 10.8 104 15-160 32-141 (143)
22 2r83_A Synaptotagmin-1; C2A-C2 99.6 4.4E-15 1.5E-19 159.8 16.5 126 15-182 17-148 (284)
23 3rdl_A Protein kinase C alpha 99.6 2.4E-15 8.3E-20 143.5 12.5 107 13-162 12-125 (137)
24 2d8k_A Synaptotagmin VII; exoc 99.6 2.7E-15 9.3E-20 144.1 12.8 106 15-162 24-136 (141)
25 1rh8_A Piccolo protein; beta-s 99.6 7.8E-16 2.7E-20 148.0 8.0 108 13-162 14-139 (142)
26 3fdw_A Synaptotagmin-like prot 99.6 1.2E-15 4.3E-20 147.8 9.4 107 16-164 22-137 (148)
27 2z0u_A WW domain-containing pr 99.6 7.7E-16 2.6E-20 150.6 7.9 104 15-160 41-154 (155)
28 2bwq_A Regulating synaptic mem 99.6 3.5E-15 1.2E-19 140.9 11.5 102 15-159 16-128 (129)
29 1v27_A Regulating synaptic mem 99.6 3E-15 1E-19 143.5 9.9 106 16-164 20-136 (141)
30 3fbk_A RGS3, RGP3, regulator o 99.6 7.6E-15 2.6E-19 143.2 12.4 111 10-163 20-139 (153)
31 1wfm_A Synaptotagmin XIII; C2 99.6 6.2E-15 2.1E-19 141.2 11.4 103 15-162 24-133 (138)
32 2chd_A Rabphilin-3A, exophilin 99.6 7.6E-15 2.6E-19 141.1 11.3 104 15-160 27-139 (142)
33 1byr_A Protein (endonuclease); 99.6 1.3E-14 4.5E-19 141.5 12.2 135 241-460 13-149 (155)
34 3n5a_A Synaptotagmin-7; calciu 99.6 1.4E-14 4.7E-19 138.3 11.7 106 15-164 14-127 (138)
35 1tjx_A Similar to synaptotagmi 99.6 1.7E-14 5.9E-19 141.5 12.7 105 15-161 23-147 (159)
36 2cm5_A Rabphilin-3A; protein t 99.6 2.2E-14 7.6E-19 141.8 13.1 91 15-147 35-133 (166)
37 2dmg_A KIAA1228 protein; beta- 99.5 9.9E-15 3.4E-19 140.3 9.6 105 16-163 23-137 (142)
38 1ugk_A Synaptotagmin IV, KIAA1 99.5 2.2E-14 7.6E-19 137.2 11.8 105 15-161 20-133 (138)
39 1w15_A Synaptotagmin IV; metal 99.5 5.4E-15 1.9E-19 144.1 7.6 103 15-161 28-138 (153)
40 2enp_A B/K protein; C2 type 1, 99.5 1E-14 3.5E-19 141.2 8.2 110 15-160 24-140 (147)
41 4gel_A Mitochondrial cardiolip 99.5 5.7E-14 1.9E-18 145.4 11.4 154 238-461 54-211 (220)
42 3l9b_A Otoferlin; C2-domain, b 99.5 1.1E-13 3.7E-18 130.3 12.1 101 80-183 37-142 (144)
43 1dqv_A Synaptotagmin III; beta 99.5 1.4E-13 4.8E-18 149.1 13.0 124 15-181 18-149 (296)
44 1byr_A Protein (endonuclease); 99.5 2E-13 6.9E-18 133.0 12.0 135 560-776 13-148 (155)
45 2cjt_A UNC-13 homolog A, MUNC1 99.4 5.2E-13 1.8E-17 126.7 12.9 96 80-179 23-130 (131)
46 4ggj_A Mitochondrial cardiolip 99.4 1.3E-13 4.5E-18 140.1 8.8 133 560-776 45-177 (196)
47 1djx_A PLC-D1, phosphoinositid 99.4 6.6E-13 2.3E-17 157.2 14.3 120 15-180 495-623 (624)
48 3jzy_A Intersectin 2; C2 domai 99.4 1.1E-12 3.8E-17 152.9 14.5 115 16-179 386-506 (510)
49 3nsj_A Perforin-1; pore formin 99.4 1.5E-12 5.2E-17 150.9 15.1 106 17-179 394-502 (540)
50 2cjs_A UNC-13 homolog A, MUNC1 99.4 1.5E-12 5E-17 128.8 11.4 97 80-180 32-140 (167)
51 3bxj_A RAS GTPase-activating p 99.4 6.3E-14 2.2E-18 161.8 1.0 124 14-184 8-160 (483)
52 2r83_A Synaptotagmin-1; C2A-C2 99.3 7E-12 2.4E-16 134.7 13.4 104 16-161 149-272 (284)
53 1cjy_A CPLA2, protein (cytosol 99.3 3.8E-12 1.3E-16 151.9 9.9 102 16-159 17-124 (749)
54 1dqv_A Synaptotagmin III; beta 99.2 3.1E-12 1.1E-16 138.5 3.3 106 16-164 151-264 (296)
55 4gel_A Mitochondrial cardiolip 99.1 1.9E-10 6.4E-15 118.8 10.7 137 560-753 57-195 (220)
56 1xdp_A Polyphosphate kinase; P 99.0 3.4E-10 1.2E-14 134.2 10.6 119 564-753 350-480 (687)
57 3qr0_A Phospholipase C-beta (P 99.0 8.6E-10 2.9E-14 133.0 12.8 113 16-181 649-771 (816)
58 3ohm_B 1-phosphatidylinositol- 99.0 5.6E-10 1.9E-14 135.4 11.0 96 80-182 742-846 (885)
59 2zkm_X 1-phosphatidylinositol- 99.0 9.6E-10 3.3E-14 133.3 12.4 113 15-180 676-798 (799)
60 3pfq_A PKC-B, PKC-beta, protei 99.0 8.6E-10 2.9E-14 132.8 10.9 107 14-163 169-282 (674)
61 1yrk_A NPKC-delta, protein kin 99.0 9.8E-09 3.4E-13 93.8 14.4 89 80-180 27-124 (126)
62 2enj_A NPKC-theta, protein kin 98.9 1.1E-08 3.6E-13 94.8 12.3 92 80-183 32-132 (138)
63 3hsi_A Phosphatidylserine synt 98.7 3.9E-08 1.3E-12 112.2 11.5 147 241-460 257-420 (458)
64 1v0w_A Phospholipase D; hydrol 98.7 5.6E-08 1.9E-12 112.9 11.9 138 560-750 65-207 (506)
65 2o8r_A Polyphosphate kinase; s 98.1 7.4E-06 2.5E-10 96.6 10.3 120 563-753 354-487 (705)
66 3qph_A TRMB, A global transcri 95.1 0.014 4.7E-07 63.8 4.5 52 559-630 117-168 (342)
67 3qph_A TRMB, A global transcri 94.3 0.061 2.1E-06 58.7 7.1 48 241-305 118-165 (342)
68 2f5t_X Archaeal transcriptiona 94.1 0.052 1.8E-06 55.8 5.8 50 241-307 9-58 (233)
69 3l4c_A Dedicator of cytokinesi 83.5 9.6 0.00033 38.3 11.9 40 92-131 77-119 (220)
70 2yrb_A Protein fantom; beta sa 82.2 5.7 0.00019 37.7 9.2 98 82-181 44-150 (156)
71 2c1l_A Restriction endonucleas 81.3 1.6 5.4E-05 44.2 5.2 39 710-750 103-144 (358)
72 2wxf_A Phosphatidylinositol-4, 65.0 27 0.00093 42.8 11.4 51 80-130 235-294 (940)
73 3hhm_A Phosphatidylinositol-4, 56.5 38 0.0013 42.0 10.6 66 80-146 375-454 (1091)
74 1e7u_A Phosphatidylinositol 3- 50.7 56 0.0019 40.1 10.8 50 80-129 238-295 (961)
75 2f5t_X Archaeal transcriptiona 49.7 34 0.0012 34.6 7.5 51 559-629 8-58 (233)
76 1q32_A TDP1P;, tyrosyl-DNA pho 34.5 15 0.00053 42.0 2.2 42 706-747 426-487 (544)
77 1jx7_A Hypothetical protein YC 32.0 63 0.0022 28.1 5.6 67 236-305 11-79 (117)
78 2y3a_A Phosphatidylinositol-4, 31.5 41 0.0014 41.8 5.4 51 80-130 371-430 (1092)
79 2d1p_A TUSD, hypothetical UPF0 26.3 1.1E+02 0.0036 28.3 6.1 73 231-305 17-91 (140)
80 2hy5_A Putative sulfurtransfer 24.6 89 0.0031 28.1 5.2 69 234-305 8-79 (130)
No 1
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=100.00 E-value=3.5e-34 Score=334.12 Aligned_cols=388 Identities=16% Similarity=0.117 Sum_probs=205.5
Q ss_pred chHHHHHHHHHHhcccceEEEEEEe-eceeEEeecCCCCCCCCCcchHHHHHHHHHHcC--CEEEEEEeCCCCccccccc
Q 002960 241 GTCWEDICHAISEAHHLIYIVGWSV-FHKIKLIREQTRPLPRGGDLTLGELLKYKSEEG--VRVLLLVWDDKTSHDKLGV 317 (862)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~-~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rG--V~VriLvwd~~~s~~~~~~ 317 (862)
.++|++|+++|++||++|+|+.|++ .++- .+.+|.++|.+||+|| |+||||+ |..++....
T Consensus 65 ~~~~~~l~~~I~~Ak~~I~i~~y~~~~~d~-------------~g~~i~~aL~~aa~rGp~V~Vril~-D~~g~~~~~-- 128 (506)
T 1v0w_A 65 KRLLAKMTENIGNATRTVDISTLAPFPNGA-------------FQDAIVAGLKESAAKGNKLKVRILV-GAAPVYHMN-- 128 (506)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEESSCCCHH-------------HHHHHHHHHHHHHHTTCCEEEEEEE-ECCC--CCC--
T ss_pred HHHHHHHHHHHHHhccEEEEEEeeccCCCh-------------HHHHHHHHHHHHHhCCCCcEEEEEE-eCccccccc--
Confidence 6789999999999999999999984 5431 1368999999999999 9999998 654332100
Q ss_pred ccCCcccCCcHHHHhhhcCCCceEEecCCCCCCccccccccccccccccccceEEeccCCCCCCcceEEEEccccccCcc
Q 002960 318 KTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (862)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R 397 (862)
..+....+.|+..|+++... .+.....+ .. ....+.+||+|++|||++ +||+||+||+.++
T Consensus 129 -------~~~~~~~~~L~~~g~~~~~~--~~~~~~~~-~~-~~~~~~r~H~K~~ViD~~--------~a~~Gg~Nl~~d~ 189 (506)
T 1v0w_A 129 -------VIPSKYRDELTAKLGKAAEN--ITLNVASM-TT-SKTAFSWNHSKILVVDGQ--------SALTGGINSWKDD 189 (506)
T ss_dssp -------CHHHHHHHHHHHHHGGGGGG--EEEEEEEE-CS-BTTTTBCBCCCEEEETTT--------EEEEESCCCCHHH
T ss_pred -------cCCHHHHHHHHhcccceeec--Cccccccc-cc-cCCccccceeeEEEECCc--------EEEeeccccCccc
Confidence 00223444455444432100 00000000 00 001124899999999998 9999999998767
Q ss_pred cCCCCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEeCHHHHHHHHHHHHHHHhhccchhhhhhccccccCcc
Q 002960 398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRD 477 (862)
Q Consensus 398 ~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~ 477 (862)
|.+. ..+|||++++++||+|.++.+.|.++|+....... .+. ..|..
T Consensus 190 y~~~----------------------------~~~~~D~~v~i~G~~v~~l~~~F~~~W~~~~~~~~---~~~--~~~~~ 236 (506)
T 1v0w_A 190 YLDT----------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQNKS---NIA--SVWFA 236 (506)
T ss_dssp HTSS----------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHHHTTT---STT--TEEEE
T ss_pred cccC----------------------------CCCceEEEEEEECHHHHHHHHHHHHHHhhhccccC---Chh--hhccc
Confidence 7531 14899999999999999999999999987643210 000 00000
Q ss_pred chhhhccccccccCccccccCCCCcccCCCCcccccccCCCCCCeeeEEEeeccCCCCCCCCCCchh-----hhcccccc
Q 002960 478 DYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIED-----IDDQSLIC 552 (862)
Q Consensus 478 ~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~-----~~~~~l~~ 552 (862)
..- ....++.. ... ..|.. ....+...+|+............|..... +...-+++
T Consensus 237 ~~~-~~~~~~~~-~~~---------~~p~~--------~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~w~~~~~~~~~ 297 (506)
T 1v0w_A 237 ASG-NAGCMPTM-HKD---------TNPKA--------SPATGNVPVIAVGGLGVGIKDVDPKSTFRPDLPTASDTKCVV 297 (506)
T ss_dssp EST-TCCCCTTH-HHH---------HSCSS--------CCCCSSEEEEEEECCCSSSCSCCTTCCCCCCCCCCSSSCSST
T ss_pred ccc-ccccCchh-ccc---------cCccc--------CcccccccceecccccceeecCCccccccccCcccccceeec
Confidence 000 00000000 000 00100 00012222222211000000000110000 00000111
Q ss_pred ccc-----c---cchhHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEE
Q 002960 553 AKD-----V---VIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVY 624 (862)
Q Consensus 553 ~~~-----~---~~e~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~ 624 (862)
..+ . ..+.++.++|+++|.+||++|||++|||.+--. |.. .....+..+|.++.++ ||+|+
T Consensus 298 d~P~~~~~~~~~~~~~~~~~~~~~~I~~A~~~I~I~tq~~~pyf~--p~~-------~~~~~i~~aL~~Aa~r--GV~Vr 366 (506)
T 1v0w_A 298 GLHDNTNADRDYDTVNPEESALRALVASAKGHIEISQQDLNATCP--PLP-------RYDIRLYDALAAKMAA--GVKVR 366 (506)
T ss_dssp TCCCTTTSCHHHHHHCHHHHHHHHHHHTCSSEEEEEESCSSCCTT--TSC-------SCCHHHHHHHHHHHHT--TCEEE
T ss_pred cccccccCcccccccccHHHHHHHHHhCcCcEEEEEecccccccc--Ccc-------cchHHHHHHHHHHHhC--CCcEE
Confidence 100 0 114679999999999999999999976654210 100 0123667777777664 59999
Q ss_pred EEecCCCCCCCCCcc----hhhhhHhHHHHHHHHHHHHHHHHHHcCc-CC--CCCCcEEEeeCCCcCCCCcccccCCCCc
Q 002960 625 VIIPMWPEGDPKTNT----VQEILFWQSQTMQMMYSVVAQELREMQV-DA--HPQDYLSFYCLGKREEAPKDVLANNGDK 697 (862)
Q Consensus 625 Ivlp~~Peg~~~~~~----~~~~~~~~~~t~~~~~~~i~~~L~~~gv-~~--~p~~yl~~y~l~~~e~~~~~~~~~~~~~ 697 (862)
||+|..+........ ...++.. ...+.. ...|.+.|+ +. .+...+++|.++.....
T Consensus 367 Il~~~~~~~~~~~~a~~~~~~~L~~~-~~~l~~-----gv~ll~~g~~e~~~~~~~~l~i~~~~~~~~~----------- 429 (506)
T 1v0w_A 367 IVVSDPANRGAVGSGGYSQIKSLSEI-SDTLRN-----RLANITGGQQAAKTAMCSNLQLATFRSSPNG----------- 429 (506)
T ss_dssp EEECCGGGCC------CCCCSCTHHH-HHHHHH-----HHHHHHTSHHHHHHHHHHHEEEEECCSSSSS-----------
T ss_pred EEeCCCCchHHHHHhHHHHHHHHHHh-hhhhcc-----cchhcccccchhccccccceeeeeccccCcc-----------
Confidence 999976521110000 0000000 000000 011112221 00 00001334433221000
Q ss_pred ccccccc-cceeeEEEeEEEEEeeeEEEecCcCccccccCCCCCcceEEEeeCCccc
Q 002960 698 VSDSQKN-QRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (862)
Q Consensus 698 ~~~~~~~-~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 753 (862)
.+ .....++|+|+|||||++++|||+|||.||| +|+++.|++++++
T Consensus 430 -----~~~~~~~~~lHaK~~vvD~~~~~vGS~N~d~rS~-----~E~~l~i~~~~~a 476 (506)
T 1v0w_A 430 -----KWADGHPYAQHHKLVSVDSSTFYIGSKNLYPSWL-----QDFGYIVESPEAA 476 (506)
T ss_dssp -----SCTTSCCCCBCCEEEEETTTEEEEESCCSSCCCS-----BCEEEEEECHHHH
T ss_pred -----ccccCccccceEEEEEECCcEEEEeCCCCCCcch-----hhceeEecCHHHH
Confidence 00 0124689999999999999999999999999 5999999998544
No 2
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=99.97 E-value=1.4e-31 Score=305.91 Aligned_cols=360 Identities=14% Similarity=0.074 Sum_probs=211.0
Q ss_pred ccCCceeEeeeccccCCCCCceecCCCCCCCcchHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHH
Q 002960 209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG 288 (862)
Q Consensus 209 ~~gn~v~l~~d~~~~~~~~p~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~ 288 (862)
..+|.|+++.+| .++|+++.++|++||++|+|+.|+|.++- .+..|.
T Consensus 24 ~~~n~v~~l~~g--------------------~~~~~~l~~~I~~A~~~I~i~~~~~~~d~-------------~g~~l~ 70 (458)
T 3hsi_A 24 LQAEQIEFLGSS--------------------AEFKTQIIELIRNAKKRIYVTALYWQKDE-------------AGQEIL 70 (458)
T ss_dssp CCGGGEEECCCH--------------------HHHHHHHHHHHHTCSSEEEEEESCBCSSH-------------HHHHHH
T ss_pred ccCCeEEEEeCH--------------------HHHHHHHHHHHHhcCCEEEEEEEEEecCc-------------HHHHHH
Confidence 358999999997 68899999999999999999999997651 136899
Q ss_pred HHHHHHHHc--CCEEEEEEeCCCC-cccccccccCCcccCCcHHHHhhhc--CCCceEE--ecCCCCCCccccccccccc
Q 002960 289 ELLKYKSEE--GVRVLLLVWDDKT-SHDKLGVKTPGVMATHDEETKKFFK--HSSVNCV--LAPRYASSKLSYFKQQIVG 361 (862)
Q Consensus 289 ~lL~~kA~r--GV~VriLvwd~~~-s~~~~~~~~~~~~~~~~~~~~~~l~--~~~v~v~--~~~~~~~~~~~~~~~~~~~ 361 (862)
++|.+||+| ||+||||+ |+.. +....+.. . + ..+......|. +++|+|. ++. +|... ..
T Consensus 71 ~aL~~aa~r~~GV~Vril~-D~~~~~r~~~g~~--~-~-~~~~~~~~~L~~~g~nv~v~~~~f~-~p~~~--------~~ 136 (458)
T 3hsi_A 71 DEIYRVKQENPHLDVKVLI-DWHRAQRNLLGAE--K-S-ATNADWYCEQRQTYQLPDDPNMFFG-VPINT--------RE 136 (458)
T ss_dssp HHHHHHHHHSTTCEEEEEE-ETTGGGSCCC---------CCHHHHHHHHHHHHTCTTCCCCEEE-ECSSS--------SG
T ss_pred HHHHHHHhcCCCCEEEEEE-ECccccccccccc--c-c-cccHHHHHHHHhhCCCceEeeeecC-Ccccc--------cc
Confidence 999999999 99999998 7631 11000000 0 0 00123333343 3347776 542 12110 12
Q ss_pred cccccccceEEeccCCCCCCcceEEEEccccccCcccCCCCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEe
Q 002960 362 TIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLD 441 (862)
Q Consensus 362 ~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~ 441 (862)
.+.++|+|++|||++ + ++||+||++.++... .....|+|+ .+.
T Consensus 137 ~~~r~H~Ki~viD~~--------v-~~~G~Ni~d~y~~~~--------------------------~~~~~drd~--~i~ 179 (458)
T 3hsi_A 137 VFGVLHVKGFVFDDT--------V-LYSGASINNVYLHQF--------------------------EKYRYDRYQ--KIT 179 (458)
T ss_dssp GGCCEECCEEEETTE--------E-EEESCCBSTTTTTCS--------------------------SCCEECCEE--EEE
T ss_pred ccCcceeeEEEECCC--------E-EEEeeecCHHHhcCC--------------------------cccCcchhh--hhc
Confidence 356899999999996 7 556699999554311 011347784 489
Q ss_pred CHHHHHHHHHH--HHHHHhhccchhhhhhccccccCccch--hh-hccccccccCccccccCCCCcccCCCCcccccccC
Q 002960 442 GPAAYDVLINF--EQRWRKATKLTELTFKFKRVSHWRDDY--LI-KIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKE 516 (862)
Q Consensus 442 Gpaa~dl~~~F--~~rW~~~~~~~~~~~~~~~~~~~~~~~--l~-~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~ 516 (862)
||.+.|....| ...|+...-.. +.. .|..+. .. ....+...+.+.. . . .+|.
T Consensus 180 g~~~~D~~~~~~~~~~~~g~~v~~-----l~~--~~~~~~~~~~~~~~~~~~~l~~~~---~--~-~~~~---------- 236 (458)
T 3hsi_A 180 HAELADSMVNFINDYLLDFSAVYP-----LDV--TNRPRTKEIRGNIRAYRKDLAQNG---E--Y-SLKS---------- 236 (458)
T ss_dssp CHHHHHHHHHHHHHTTCCTTTCEE-----SSS--SCCCCGGGTHHHHHHHHHHHHHHC---C--C-CCSS----------
T ss_pred CchHHHHHHHHHHhhhhcCccchh-----hHH--HhcccchhhHHHHHHHHHhhhhcc---c--c-cccc----------
Confidence 99999999998 44565432110 000 010000 00 0000000000000 0 0 0010
Q ss_pred CCCCCeeeEEEeeccCCCCCCCCCCchhhhcccccccccccchhHHHHHHHHHHHhccceEEEeecccccccCCCCcccc
Q 002960 517 DDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKN 596 (862)
Q Consensus 517 ~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~ 596 (862)
...+...+|+.... + | + ..+..+..+|+++|.+|+++|||+++||++.
T Consensus 237 ~~~~~~~~~v~p~~--~-----~---------------~-~~~~~i~~~~~~lI~~A~~~I~I~tpYf~p~--------- 284 (458)
T 3hsi_A 237 AVKLPNVLSVSPLF--G-----L---------------G-ASGNELNQVIEDLFLQVQKKLVICTPYFNFP--------- 284 (458)
T ss_dssp CBSSCSSCEEEEEE--E-----E---------------S-SSSCHHHHHHHHHHHTCSSEEEEECSSSCCC---------
T ss_pred cCCCCceEEEecCC--C-----C---------------C-CchhHHHHHHHHHHHhcccEEEEEEeccCCC---------
Confidence 00011123332210 0 0 0 0135788999999999999999999999964
Q ss_pred CCcCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCcchhhhhHhHHHHH--HHHHHHH---HHHHHHcC-cCCC
Q 002960 597 AGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTM--QMMYSVV---AQELREMQ-VDAH 670 (862)
Q Consensus 597 ~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Peg~~~~~~~~~~~~~~~~t~--~~~~~~i---~~~L~~~g-v~~~ 670 (862)
..+..+|..+++ +||+|+||+|.....+.-....+.++.+....+ +.....+ ++.|.+.| ++
T Consensus 285 --------~~~~~aL~~Aa~--rGV~VrIi~~~~~and~y~~~~~~~~~~~~~~~lye~~~~~f~~~~~~l~~~G~i~-- 352 (458)
T 3hsi_A 285 --------RTLQHKIATLLE--NGKRVEIIVGDKVANDFYIPPEQPFKMAGALPYLYESNLRRFCEKFETQIESGQLV-- 352 (458)
T ss_dssp --------HHHHHHHHHHHT--TTCEEEEEEECGGGSTTCCCTTSCCCGGGGHHHHHHHHHHHHHHHTHHHHHHTSEE--
T ss_pred --------HHHHHHHHHHHH--CCCeEEEEECCccccCCccCCcchhhhhcchHHHHHHhhhhhHHHHHHHHhCCCeE--
Confidence 256667777755 559999999975311100000111112222211 1110111 23566667 21
Q ss_pred CCCcEEEeeCCCcCCCCcccccCCCCcccccccccceeeEEEeEEEEEeeeEEEecCcCccccccCCCCCcceEEEeeCC
Q 002960 671 PQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQP 750 (862)
Q Consensus 671 p~~yl~~y~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~ 750 (862)
+++|.. ...++|+|+|||||++++|||+|||.||+. .|.|+++.++++
T Consensus 353 ----V~i~~~--------------------------~~~~lHaK~~vvD~~~~~vGS~N~d~RS~~--lN~E~~~~i~~~ 400 (458)
T 3hsi_A 353 ----VRLWRD--------------------------GDNTYHLKGVWVDDRYILLTGNNLNPRAWR--LDAENGLLIYDP 400 (458)
T ss_dssp ----EEEECB--------------------------TTBEECCCEEEETTTEEEEECCCCSHHHHH--TCEEEEEEEECT
T ss_pred ----EEEEec--------------------------CCCceeEEEEEECCeEEEecCCCCCcchhh--hCceeEEEEeCC
Confidence 234421 145999999999999999999999999998 559999999998
Q ss_pred c
Q 002960 751 H 751 (862)
Q Consensus 751 ~ 751 (862)
+
T Consensus 401 ~ 401 (458)
T 3hsi_A 401 Q 401 (458)
T ss_dssp T
T ss_pred c
Confidence 5
No 3
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.85 E-value=1.2e-20 Score=223.23 Aligned_cols=140 Identities=15% Similarity=0.151 Sum_probs=105.3
Q ss_pred chHHHHHHHHHHhccc-----ceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCccccc
Q 002960 241 GTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKL 315 (862)
Q Consensus 241 ~~~f~~l~~aI~~Ak~-----~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~ 315 (862)
.+.|+.+.+.|++|++ +|+|+.|.+.++ ..+.++|.+||++||+|+||+ +..+...
T Consensus 346 ~~sf~~v~~~I~~A~~dp~v~~I~it~Y~~~~d----------------~~I~~AL~~AA~rGV~VrVLv-d~~a~~~-- 406 (687)
T 1xdp_A 346 YHTFEHVLELLRQASFDPSVLAIKINIYRVAKD----------------SRIIDSMIHAAHNGKKVTVVV-ELQARFD-- 406 (687)
T ss_dssp TBCTHHHHHHHHHHHHCTTEEEEEEEESSCCTT----------------CHHHHHHHHHHHTTCEEEEEE-CTTCSST--
T ss_pred hhhhhhHHHHHHHHhhCCcceEEEEEeeeecCc----------------HHHHHHHHHHHhcCCEEEEEE-CCCcccc--
Confidence 4568899999999997 999988876543 589999999999999999998 7664211
Q ss_pred ccccCCcccCCcHHHHhhhcCCCceEEecCCCCCCccccccccccccccccccceEEeccCCCCCCcceE---EEEcccc
Q 002960 316 GVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKIT---AFIGGID 392 (862)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~v---afvGG~d 392 (862)
. ..+....+.|..+||+|.... + .+++|.|++|||++..+ .+ +|+||.|
T Consensus 407 -~-------~~n~~~~~~L~~aGV~V~~~~--~--------------~~k~H~Ki~VID~re~~----~i~~~a~iGS~N 458 (687)
T 1xdp_A 407 -E-------EANIHWAKRLTEAGVHVIFSA--P--------------GLKIHAKLFLISRKENG----EVVRYAHIGTGN 458 (687)
T ss_dssp -T-------TTTTTTTHHHHHHTCEEEECC--T--------------TCEECCEEEEEEEEETT----EEEEEEEEESSC
T ss_pred -h-------hhHHHHHHHHHHCCCEEEEec--C--------------CccccceEEEEEeccCC----eEEEEEEEeCCc
Confidence 0 001234556778899987532 1 23589999999952111 15 9999999
Q ss_pred ccCcccCCCCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEeCH-HHHHHHHHHHHHHHhh
Q 002960 393 LCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKA 459 (862)
Q Consensus 393 l~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gp-aa~dl~~~F~~rW~~~ 459 (862)
+....+ ..|+|+++.+.|| +|.++...|...|..+
T Consensus 459 ~d~rs~--------------------------------~~n~D~~l~i~~~~i~~~l~~~F~~~~~~s 494 (687)
T 1xdp_A 459 FNEKTA--------------------------------RLYTDYSLLTADARITNEVRRVFNFIENPY 494 (687)
T ss_dssp SCTTGG--------------------------------GTEEEEEEEECCHHHHHHHHHHHHHHHCTT
T ss_pred CCcchh--------------------------------hhcceEEEEEeCHHHHHHHHHHHHHHHhhc
Confidence 877322 3578999999997 6899999999999753
No 4
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=99.81 E-value=7e-19 Score=206.45 Aligned_cols=267 Identities=14% Similarity=0.177 Sum_probs=178.7
Q ss_pred chHHHHHHHHHHhccc-----ceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCccccc
Q 002960 241 GTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKL 315 (862)
Q Consensus 241 ~~~f~~l~~aI~~Ak~-----~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~ 315 (862)
.+.|+.+.++|++|++ +|.++.|.+..+ ..+.++|.+||++||+|++|+ | .++..
T Consensus 351 ~~sf~~vi~~I~~A~~DP~V~sIk~tlYr~~~d----------------s~Iv~ALi~AA~rGv~V~vLv-e-l~arf-- 410 (705)
T 2o8r_A 351 YYTYDYVVRLLMEAAISPDVSEIRLTQYRVAEN----------------SSIISALEAAAQSGKKVSVFV-E-LKARF-- 410 (705)
T ss_dssp TBCSHHHHHHHHHHHTCTTEEEEEEEESCCCSC----------------CHHHHHHHHHHHTTCEEEEEE-C-CCSCC--
T ss_pred hHhHHHHHHHHHHhccCCCceEEEEEEEEEcCC----------------HHHHHHHHHHHHCCCEEEEEE-e-CCCCc--
Confidence 5669999999999999 999999987643 589999999999999999998 7 44321
Q ss_pred ccccCCcccCCcHHHHhhhcCCCceEEecCCCCCCccccccccccccccccccceEEeccC--CCCCCcceEEEEccccc
Q 002960 316 GVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQ--ASGNNRKITAFIGGIDL 393 (862)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~--~~~~~~~~vafvGG~dl 393 (862)
....+....+.|+.+||+|... . ..++.|+|++|||++ ..|.- +..+++|.-|+
T Consensus 411 -------dee~ni~wa~~Le~aGv~Vv~g--~--------------~~lk~H~Ki~lIdrr~~~~g~~-~~y~~igtGN~ 466 (705)
T 2o8r_A 411 -------DEENNLRLSERMRRSGIRIVYS--M--------------PGLKVHAKTALILYHTPAGERP-QGIALLSTGNF 466 (705)
T ss_dssp -----------CHHHHHHHHHHTCEEEEC--C--------------TTCCBCCCEEEEEECCCSSSCC-CEEEEEESSCS
T ss_pred -------chhhhHHHHHHHHHCCCEEEEc--c--------------CCCCceeEEEEEecccccCCce-eEEEeccccce
Confidence 0001235677888999998752 1 135799999999985 22211 11233332222
Q ss_pred cCcccCCCCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEeCH-HHHHHHHHHHHHHHhhccchhhhhhcccc
Q 002960 394 CDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATKLTELTFKFKRV 472 (862)
Q Consensus 394 ~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gp-aa~dl~~~F~~rW~~~~~~~~~~~~~~~~ 472 (862)
.+ . + -.-|.|+++...+| ++.|+...|...|....
T Consensus 467 n~-----~--------------------------t-ariy~D~~l~t~~~~i~~dl~~vF~~~tg~~~------------ 502 (705)
T 2o8r_A 467 NE-----T--------------------------T-ARIYSDTTLMTANTDIVHDVYRLFRILDGDPE------------ 502 (705)
T ss_dssp SC-----C--------------------------C-SSCEEEEEEEECCHHHHHHHHHHHHHHTTCCC------------
T ss_pred ee-----e--------------------------E-EEEEeeeeeeecChHHHHHHHHHHHHHhCCCC------------
Confidence 11 0 0 12377888888776 66999999966653210
Q ss_pred ccCccchhhhccccccccCccccccCCCCcccCCCCcccccccCCCCCCeeeEEEeeccCCCCCCCCCCchhhhcccccc
Q 002960 473 SHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLIC 552 (862)
Q Consensus 473 ~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~ 552 (862)
+ ... .|++-+ |..
T Consensus 503 --------------------------------~--------------~~~-~~l~~s---------P~~----------- 515 (705)
T 2o8r_A 503 --------------------------------P--------------ARF-SRLLVA---------RYN----------- 515 (705)
T ss_dssp --------------------------------C--------------SCC-SSCEET---------TTT-----------
T ss_pred --------------------------------C--------------CCc-eEEEEC---------Cch-----------
Confidence 0 000 122211 211
Q ss_pred cccccchhHHHHHHHHHHHhccc----eEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEe-
Q 002960 553 AKDVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVII- 627 (862)
Q Consensus 553 ~~~~~~e~sI~~ay~~~I~~A~~----~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivl- 627 (862)
....|.+.+..+|.+|++ +|+|.++|+. . ..+..+|.+|.++| |+|.||+
T Consensus 516 -----~~~~i~~~i~~eI~~Ak~G~~a~I~ik~n~l~-D-----------------~~ii~aL~~As~~G--V~V~LIVR 570 (705)
T 2o8r_A 516 -----MGEAITNLIEREIENVKRGKRGYMLLKMNGLQ-D-----------------KNVITQLYRASEAG--VEIDLIVR 570 (705)
T ss_dssp -----HHHHHHHHHHHHHHHHHTTCCCEEEEEESCBC-C-----------------HHHHHHHHHHHHTT--CEEEEEES
T ss_pred -----HHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCC-C-----------------HHHHHHHHHHHHCC--CeEEEEEc
Confidence 146789999999999999 9999999843 2 35666777776655 9999999
Q ss_pred ------cCCCCCCCCCcchhhhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEeeCCCcCCCCcccccCCCCccccc
Q 002960 628 ------PMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDS 701 (862)
Q Consensus 628 ------p~~Peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~l~~~e~~~~~~~~~~~~~~~~~ 701 (862)
|..| .++ -+.+...
T Consensus 571 GiC~L~Pgv~--~sd-------------------------------------ni~V~Si--------------------- 590 (705)
T 2o8r_A 571 GICCLVPDMP--QSR-------------------------------------NIRVTRL--------------------- 590 (705)
T ss_dssp SCBCSCCSSG--GGT-------------------------------------TEEEEEC---------------------
T ss_pred cccccCCCCC--CCC-------------------------------------CeEEEee---------------------
Confidence 4211 000 0111110
Q ss_pred ccccceeeEEEeEEEEE---eeeEEEecCcCccccccCCCCCcceEEEeeCCccc
Q 002960 702 QKNQRFMIYVHAKGMIV---DDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (862)
Q Consensus 702 ~~~~~~~iyvHSKlmIV---DD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 753 (862)
++ ...=|+|+++. ||++++||||||+.|||. +.-|+++.++||++.
T Consensus 591 --vg--r~Leh~RIy~f~~gd~~~~~IGSAn~m~Rnl~--~r~Ev~~~i~d~~~~ 639 (705)
T 2o8r_A 591 --VD--MYLEHSRIWCFHNGGKEEVFISSADWMKRNLY--NRIETACPVLDPTLR 639 (705)
T ss_dssp --CS--SSEECCCEEEECGGGSCEEEEESCCBCHHHHH--TSBCEEEECCSHHHH
T ss_pred --HH--HHHhcCEEEEEECCCCcEEEEeccccchhhhh--heeEEEEEEcCHHHH
Confidence 00 12448899999 899999999999999999 459999999998544
No 5
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=99.81 E-value=9.3e-20 Score=178.18 Aligned_cols=129 Identities=22% Similarity=0.367 Sum_probs=106.0
Q ss_pred eeEeeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC
Q 002960 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (862)
Q Consensus 11 ~~~~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~ 90 (862)
.++.++|.|.|+|++|++|+.+|..+... ++.+. ..++||||+|.+++
T Consensus 23 ~~~~~~g~L~V~VieA~~L~~~D~~~~~~--~f~~~------------------------------~g~sDPYv~v~l~~ 70 (157)
T 2fk9_A 23 GTMKFNGYLRVRIGEAVGLQPTRWSLRHS--LFKKG------------------------------HQLLDPYLTVSVDQ 70 (157)
T ss_dssp -CCCEEEEEEEEEEEEECCCCCHHHHHTT--TSSSS------------------------------CCCCCEEEEEEETT
T ss_pred hhccCccEEEEEEEEEECCCCcccccccc--ccccC------------------------------CCCCCeEEEEEECC
Confidence 45679999999999999999887543210 11100 01289999999999
Q ss_pred eEEEeeeeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeeccC----ceeEEEEEccCCCCC
Q 002960 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG----ELISRWYDIIAPSGS 165 (862)
Q Consensus 91 ~~~~rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g----~~~~~w~~l~~~~~~ 165 (862)
++++||+++++|+||+|||+|.|.+.. ...|.|+|||+|.++ +++||++.||+.++..+ ...+.||+|.
T Consensus 71 ~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~----- 144 (157)
T 2fk9_A 71 VRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE----- 144 (157)
T ss_dssp EEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB-----
T ss_pred EeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC-----
Confidence 888899999999999999999999864 458999999999998 89999999999998855 6789999992
Q ss_pred CCCCCceEEEEeeee
Q 002960 166 PPKPGASIQLELKFT 180 (862)
Q Consensus 166 ~~~~~g~l~l~l~~~ 180 (862)
+.|+|+|+++|.
T Consensus 145 ---~~G~i~l~l~~~ 156 (157)
T 2fk9_A 145 ---PEGKVFVVITLT 156 (157)
T ss_dssp ---SSCEEEEEEEEC
T ss_pred ---CCcEEEEEEEEE
Confidence 379999999874
No 6
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.2e-18 Score=164.39 Aligned_cols=124 Identities=28% Similarity=0.481 Sum_probs=108.6
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEE
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~ 94 (862)
..|.|.|+|++|++|+.++. +. +||||++.+.+.+ .
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~------------------------------------------~dpyv~v~~~~~~-~ 40 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GK------------------------------------------PDPIVSVIFKDEK-K 40 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SC------------------------------------------CCEEEEEECSSCE-E
T ss_pred CCcEEEEEEEEeeCCCCCCC-CC------------------------------------------CCeEEEEEECCEe-E
Confidence 56899999999999998876 54 8999999998866 6
Q ss_pred eeeeccCCCCCceeeEEEEeecCC----CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEE---ccCCCCCC
Q 002960 95 RTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD---IIAPSGSP 166 (862)
Q Consensus 95 rT~vi~~t~~P~Wne~f~~~v~~~----~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~---l~~~~~~~ 166 (862)
||++++++.||+|||+|.|.+..+ ...|.|+|||.+.++ +++||++.|++.++..+...+.|++ |.+..++.
T Consensus 41 kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~ 120 (140)
T 2dmh_A 41 KTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQD 120 (140)
T ss_dssp ECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCE
T ss_pred EeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCC
Confidence 999999999999999999998753 578999999999997 8999999999999988888899988 76665543
Q ss_pred CCCCceEEEEeeeecCCC
Q 002960 167 PKPGASIQLELKFTPCDK 184 (862)
Q Consensus 167 ~~~~g~l~l~l~~~~~~~ 184 (862)
..|+|+|+++|.|...
T Consensus 121 --~~G~l~l~~~~~p~~~ 136 (140)
T 2dmh_A 121 --TGATIDLVIGYDPPSG 136 (140)
T ss_dssp --EEEEEEEEEEECCCBS
T ss_pred --CCCEEEEEEEEECCCC
Confidence 4699999999999654
No 7
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=99.76 E-value=3.3e-18 Score=163.64 Aligned_cols=129 Identities=19% Similarity=0.401 Sum_probs=104.9
Q ss_pred eeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEE
Q 002960 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (862)
Q Consensus 14 ~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~ 93 (862)
.++|.|.|+|++|++|+.+|..+... + |++ .+...+||||+|.+++.++
T Consensus 3 ~~~g~L~v~v~~a~~L~~~d~~~~~~---~--------------------g~~--------~~~~~~DPyv~v~l~~~~~ 51 (136)
T 1gmi_A 3 VFNGLLKIKICEAVSLKPTAWSLRDA---V--------------------GPR--------PQTFLLDPYIALNVDDSRI 51 (136)
T ss_dssp CEEEEEEEEEEEEESCCCCHHHHCC----C--------------------CSS--------CCCCCCCEEEEEEETTEEE
T ss_pred ccceEEEEEEEeCcCCCCcccccccc---c--------------------ccc--------cCCcCcCcEEEEEECCeEe
Confidence 57899999999999999887543200 0 000 0011289999999999888
Q ss_pred EeeeeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeeccC--ceeEEEEEccCCCCCCCCCC
Q 002960 94 ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--ELISRWYDIIAPSGSPPKPG 170 (862)
Q Consensus 94 ~rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g--~~~~~w~~l~~~~~~~~~~~ 170 (862)
+||++++++.||+|||+|.|.+... ..|.|+|||+|.++ +++||++.|++.++..+ ...+.|++|. +.
T Consensus 52 ~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~ 122 (136)
T 1gmi_A 52 GQTATKQKTNSPAWHDEFVTDVCNG-RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--------PE 122 (136)
T ss_dssp EECCCCSSCSSCEEEEEEEEEEEEE-CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------SS
T ss_pred eeeeEECCCcCCccCCEEEEEecCC-CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcC--------CC
Confidence 8999999999999999999998765 78999999999988 89999999999998864 3468999982 37
Q ss_pred ceEEEEeeeecC
Q 002960 171 ASIQLELKFTPC 182 (862)
Q Consensus 171 g~l~l~l~~~~~ 182 (862)
|+|+|+++|.+.
T Consensus 123 G~i~l~l~~~~~ 134 (136)
T 1gmi_A 123 GKVYVIIDLSGS 134 (136)
T ss_dssp CEEEEEEEEEEE
T ss_pred eEEEEEEEEEec
Confidence 999999999763
No 8
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=99.76 E-value=3.1e-18 Score=163.09 Aligned_cols=127 Identities=24% Similarity=0.357 Sum_probs=110.1
Q ss_pred CceeEeeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEE
Q 002960 9 KEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV 88 (862)
Q Consensus 9 ~~~~~~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l 88 (862)
+..+..-.|.|.|+|++|++|+.++..+. +||||++.+
T Consensus 5 s~~~~~~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~ 42 (133)
T 2ep6_A 5 SSGDVKDVGILQVKVLKAADLLAADFSGK------------------------------------------SDPFCLLEL 42 (133)
T ss_dssp CCCSCCCSEEEEEEEEEEESCCCSSSSSC------------------------------------------CCEEEEEEE
T ss_pred cccccCCceEEEEEEEeeECCCCCCCCCC------------------------------------------cCeEEEEEE
Confidence 44444567999999999999998887665 899999999
Q ss_pred CCeEEEeeeeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCCCCC
Q 002960 89 PQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP 167 (862)
Q Consensus 89 ~~~~~~rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~ 167 (862)
.+.+ .||++++++.||+|||+|.|.+......|.|+|||.+.++ +++||++.+++.++..+. ..|++|....++.
T Consensus 43 ~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~- 118 (133)
T 2ep6_A 43 GNDR-LQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ- 118 (133)
T ss_dssp TTEE-EECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-
T ss_pred CCEE-EEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHccCCC--ceEEEeecCCCCC-
Confidence 9875 5999999999999999999999988888999999999997 899999999999998765 5899997665443
Q ss_pred CCCceEEEEeeeec
Q 002960 168 KPGASIQLELKFTP 181 (862)
Q Consensus 168 ~~~g~l~l~l~~~~ 181 (862)
...|+|+|+++|..
T Consensus 119 ~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 119 AFKGVIYLEMDLIY 132 (133)
T ss_dssp CCSSEEEEEEEEEE
T ss_pred ccceEEEEEEEEEe
Confidence 46899999999864
No 9
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=99.76 E-value=5.9e-18 Score=165.12 Aligned_cols=124 Identities=21% Similarity=0.371 Sum_probs=101.3
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~---- 90 (862)
..|.|.|+|++|++|+.+|..+. +||||+|.+..
T Consensus 18 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 55 (153)
T 3b7y_A 18 NSRIVRVRVIAGIGLAKKDILGA------------------------------------------SDPYVRVTLYDPMNG 55 (153)
T ss_dssp TCEEEEEEEEEEESCC-------------------------------------------------CCEEEEEEEEETTTE
T ss_pred CccEEEEEEEEeeCCCCCCCCCC------------------------------------------CCcEEEEEEECCCCc
Confidence 34899999999999998886665 89999999963
Q ss_pred -eEEEeeeeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeeccCce------eEEEEEccCC
Q 002960 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL------ISRWYDIIAP 162 (862)
Q Consensus 91 -~~~~rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~------~~~w~~l~~~ 162 (862)
....||++++++.||+|||+|.|.+......|.|+|||.+.++ +++||++.|++.++..+.. ...||+|...
T Consensus 56 ~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~ 135 (153)
T 3b7y_A 56 VLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPR 135 (153)
T ss_dssp EEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCS
T ss_pred cceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccc
Confidence 3567999999999999999999999888788999999999997 8999999999999886543 2589999654
Q ss_pred CCCCCCCCceEEEEeeeec
Q 002960 163 SGSPPKPGASIQLELKFTP 181 (862)
Q Consensus 163 ~~~~~~~~g~l~l~l~~~~ 181 (862)
.++. +..|+|+|+++|.|
T Consensus 136 ~~~~-~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 136 SHKS-RVKGYLRLKMTYLP 153 (153)
T ss_dssp STTC-CCCSEEEEEEEECC
T ss_pred cCCC-CcceEEEEEEEEeC
Confidence 4332 56899999999986
No 10
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=99.75 E-value=3.6e-18 Score=163.21 Aligned_cols=124 Identities=24% Similarity=0.497 Sum_probs=108.7
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEE
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~ 94 (862)
..|.|.|+|++|++|+.++..+. +||||+|.+.+.+ .
T Consensus 8 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~ 44 (136)
T 1wfj_A 8 PHGTLEVVLVSAKGLEDADFLNN------------------------------------------MDPYVQLTCRTQD-Q 44 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCS------------------------------------------SCCCEEEESSSCE-E
T ss_pred CcEEEEEEEEeccCCCCcccCCC------------------------------------------cCceEEEEECCcc-c
Confidence 45999999999999999887665 8999999998876 4
Q ss_pred eeeecc-CCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceee-ccCceeEEEEEccCCCCCCCCCCc
Q 002960 95 RTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTI-ATGELISRWYDIIAPSGSPPKPGA 171 (862)
Q Consensus 95 rT~vi~-~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l-~~g~~~~~w~~l~~~~~~~~~~~g 171 (862)
||++++ ++.||+|||+|.|.+......|.|+|||.+.++ +++||++.|++.++ ..+...+.||+|. ..+ +..|
T Consensus 45 kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~~~---~~~G 120 (136)
T 1wfj_A 45 KSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV-KDE---EYKG 120 (136)
T ss_dssp ECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE-ETT---EEEE
T ss_pred eeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEee-cCC---ccCE
Confidence 999999 899999999999999987788999999999987 89999999999998 4566678999997 333 3589
Q ss_pred eEEEEeeeecCCCC
Q 002960 172 SIQLELKFTPCDKN 185 (862)
Q Consensus 172 ~l~l~l~~~~~~~~ 185 (862)
+|+|+++|.|...+
T Consensus 121 ~i~l~l~~~p~~~~ 134 (136)
T 1wfj_A 121 EIWVALSFKPSGPS 134 (136)
T ss_dssp EEEEEEEEEECCSC
T ss_pred EEEEEEEEEeCCCC
Confidence 99999999997553
No 11
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=99.75 E-value=3.4e-17 Score=158.81 Aligned_cols=120 Identities=23% Similarity=0.474 Sum_probs=104.3
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEE
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~ 94 (862)
..|.|.|+|++|++|+.+|..+. +||||++.+++.. .
T Consensus 15 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~ 51 (148)
T 3kwu_A 15 WSAKISITVVCAQGLQAKDKTGS------------------------------------------SDPYVTVQVGKTK-K 51 (148)
T ss_dssp CCEEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEETTEE-E
T ss_pred cccEEEEEEEeeeCCCCCCCCCC------------------------------------------cCeEEEEEECCEE-E
Confidence 56999999999999999887665 9999999998865 5
Q ss_pred eeeeccCCCCCceeeEEEEeecCCCceEEEEEEecCCC-----------C-CeeeEEEEEeceeeccCceeEEEEEccCC
Q 002960 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF-----------G-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (862)
Q Consensus 95 rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~-----------~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~ 162 (862)
||++++++.||+|||+|.|.+..+...+.|+|||.+.+ + +++||++.+++.++. ...+.|++|...
T Consensus 52 kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~ 129 (148)
T 3kwu_A 52 RTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKR 129 (148)
T ss_dssp ECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCS
T ss_pred ECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccC
Confidence 99999999999999999999988888999999999985 4 899999999999983 456899999644
Q ss_pred CCCCCCCCceEEEEeeee
Q 002960 163 SGSPPKPGASIQLELKFT 180 (862)
Q Consensus 163 ~~~~~~~~g~l~l~l~~~ 180 (862)
.++ ....|+|+|+++|.
T Consensus 130 ~~~-~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 130 TDK-SAVSGAIRLHISVE 146 (148)
T ss_dssp STT-CCCCCEEEEEEEEE
T ss_pred CCC-CCCceEEEEEEEEE
Confidence 333 24679999999985
No 12
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=99.74 E-value=2.6e-17 Score=164.58 Aligned_cols=124 Identities=21% Similarity=0.373 Sum_probs=99.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-----
Q 002960 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----- 90 (862)
Q Consensus 16 ~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~----- 90 (862)
.|.|.|+|++|++|+.++..+. +||||+|.+.+
T Consensus 7 ~g~L~V~v~~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~~~ 44 (176)
T 3m7f_B 7 TRVVRVKVIAGIGLAKKDILGA------------------------------------------SDPYVRVTLYDPMSGI 44 (176)
T ss_dssp CEEEEEEEEEEESCC---CCCC------------------------------------------CCEEEEEEEEETTTEE
T ss_pred cEEEEEEEEEeeCCCCcCCCCC------------------------------------------cCcEEEEEEECCCCCc
Confidence 4899999999999998887665 89999999964
Q ss_pred eEEEeeeeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeeccCcee-E-----EEEEccCCC
Q 002960 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI-S-----RWYDIIAPS 163 (862)
Q Consensus 91 ~~~~rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~-~-----~w~~l~~~~ 163 (862)
....||++++++.||+|||+|.|.+......|.|+|||.+.++ +++||++.|++..+..+... + .||+|....
T Consensus 45 ~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~ 124 (176)
T 3m7f_B 45 LTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS 124 (176)
T ss_dssp EEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSS
T ss_pred ccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccC
Confidence 1567999999999999999999999887788999999999997 89999999999999866443 2 799996544
Q ss_pred CCCCCCCceEEEEeeeecC
Q 002960 164 GSPPKPGASIQLELKFTPC 182 (862)
Q Consensus 164 ~~~~~~~g~l~l~l~~~~~ 182 (862)
++ .+..|+|+|+++|.|.
T Consensus 125 ~~-~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 125 HK-SRVKGYLRLKMTYLPK 142 (176)
T ss_dssp TT-CCCCSEEEEEEEECC-
T ss_pred CC-CccCEEEEEEEEEEeC
Confidence 33 2468999999999997
No 13
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=99.71 E-value=4.1e-17 Score=153.56 Aligned_cols=118 Identities=25% Similarity=0.429 Sum_probs=98.8
Q ss_pred ceEEEEEEEEeeCCCCC---CCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--
Q 002960 16 HGDLDLKIIRARRLPNM---DMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (862)
Q Consensus 16 ~g~L~v~I~~A~~L~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~-- 90 (862)
.|.|.|+|++|++|+.+ +..+. +||||++.+.+
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~------------------------------------------~dpyv~v~~~~~~ 39 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDT------------------------------------------PDPYVELFISTTP 39 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCC------------------------------------------CCEEEEEECTTST
T ss_pred CcEEEEEEEeeeCCCCCCccccCCC------------------------------------------CCCEEEEEEccCC
Confidence 48999999999999975 22232 89999999975
Q ss_pred eEEEeeeeccCCCCCceeeEEEEeecC-CCceEEEEEEecCCCCCeeeEEEEEeceeeccCceeEEEEEccCCCCCCCCC
Q 002960 91 ATVARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP 169 (862)
Q Consensus 91 ~~~~rT~vi~~t~~P~Wne~f~~~v~~-~~~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~ 169 (862)
....||++++++.||+|||+|.|.+.. ....|.|+|||.+.+++++||++.+++.++..|...+.|++|.. ..
T Consensus 40 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~------~~ 113 (126)
T 1rlw_A 40 DSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQ------VT 113 (126)
T ss_dssp TCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEETT------TE
T ss_pred CceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHccCCCcEEEEEEcCC------Cc
Confidence 255799999999999999999999954 45779999999999889999999999999999999999999942 23
Q ss_pred CceEEEEeeeec
Q 002960 170 GASIQLELKFTP 181 (862)
Q Consensus 170 ~g~l~l~l~~~~ 181 (862)
.|+|+|+++-.|
T Consensus 114 ~g~i~~~le~~~ 125 (126)
T 1rlw_A 114 EMVLEMSLEVAS 125 (126)
T ss_dssp EEEEEEEEECCC
T ss_pred eEEEEEEEEeCC
Confidence 577777776443
No 14
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=99.69 E-value=1.3e-16 Score=159.04 Aligned_cols=127 Identities=18% Similarity=0.301 Sum_probs=103.7
Q ss_pred EeeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeE
Q 002960 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT 92 (862)
Q Consensus 13 ~~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~ 92 (862)
....++|.|+|++|++|++.+..+. +||||+|.+++ .
T Consensus 32 ~~~~~~L~V~V~~A~~L~~~~~~~~------------------------------------------sDPYv~v~~~~-~ 68 (173)
T 2nq3_A 32 LTMKSQLQITVISAKLKENKKNWFG------------------------------------------PSPYVEVTVDG-Q 68 (173)
T ss_dssp CSCCEEEEEEEEEEEECCCC--CCC------------------------------------------CCEEEEEEETT-E
T ss_pred cCCceEEEEEEEEeECCCCcccCCC------------------------------------------CCeEEEEEECC-E
Confidence 3467899999999999984333332 89999999988 5
Q ss_pred EEeeeeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeeccCc-----eeEEEEEccCCCCCC
Q 002960 93 VARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE-----LISRWYDIIAPSGSP 166 (862)
Q Consensus 93 ~~rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~-----~~~~w~~l~~~~~~~ 166 (862)
+.||+++++++||+|||+|.|.+. +...|.|+|||.|.++ +++||++.+++.++..+. ....|++|....+ .
T Consensus 69 ~~kT~v~~~tlnP~Wne~f~f~v~-~~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~-~ 146 (173)
T 2nq3_A 69 SKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKE-P 146 (173)
T ss_dssp EEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSC-T
T ss_pred EeEccccCCCCCCeECCEEEEEeC-CCCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCC-C
Confidence 579999999999999999999985 4778999999999997 899999999999886432 2467999976533 3
Q ss_pred CCCCceEEEEeeeecCCC
Q 002960 167 PKPGASIQLELKFTPCDK 184 (862)
Q Consensus 167 ~~~~g~l~l~l~~~~~~~ 184 (862)
.+..|+|+|++.|.++..
T Consensus 147 ~~~~G~L~v~l~~l~~~~ 164 (173)
T 2nq3_A 147 TETIGDLSICLDGLQLES 164 (173)
T ss_dssp TSEEEEEEEEEESEECC-
T ss_pred CcccEEEEEEEeeeecch
Confidence 356899999999998743
No 15
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=99.69 E-value=2.1e-16 Score=150.22 Aligned_cols=120 Identities=19% Similarity=0.351 Sum_probs=99.7
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-eEEEe
Q 002960 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-ATVAR 95 (862)
Q Consensus 17 g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~-~~~~r 95 (862)
..|.|+|++|++|+.+|..+. +||||+|.+.+ ....|
T Consensus 5 ~~L~V~v~~a~~L~~~d~~g~------------------------------------------sDpyv~v~~~~~~~~~k 42 (132)
T 3pyc_A 5 IKIRLTVLCAKNLAKKDFFRL------------------------------------------PDPFAKIVVDGSGQCHS 42 (132)
T ss_dssp EEEEEEEEEEESCCCCSTTCC------------------------------------------CCEEEEEEETTTCCEEE
T ss_pred EEEEEEEEEeECCCCCCCCCC------------------------------------------cCeEEEEEECCCCceEE
Confidence 579999999999999887765 89999999965 45679
Q ss_pred eeeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCC----CeeeEEEEEeceeec-cCceeEEEEEccCCCC-CCCCC
Q 002960 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG----AQIIGTAAIPAHTIA-TGELISRWYDIIAPSG-SPPKP 169 (862)
Q Consensus 96 T~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~----~~~iG~~~i~l~~l~-~g~~~~~w~~l~~~~~-~~~~~ 169 (862)
|++++++.||+|||+|.|.+.... .|.|+|||.+.++ +++||.+.|++..+. .+.....|++|....+ ++.+.
T Consensus 43 T~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~ 121 (132)
T 3pyc_A 43 TDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAV 121 (132)
T ss_dssp CCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCC
T ss_pred CCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCce
Confidence 999999999999999999998765 4999999999886 699999999999883 3344458899966532 23356
Q ss_pred CceEEEEeee
Q 002960 170 GASIQLELKF 179 (862)
Q Consensus 170 ~g~l~l~l~~ 179 (862)
.|+|+|++++
T Consensus 122 ~G~i~v~l~~ 131 (132)
T 3pyc_A 122 RGQIVVSLQT 131 (132)
T ss_dssp CSEEEEEEEE
T ss_pred eEEEEEEEEc
Confidence 8999999875
No 16
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.66 E-value=2.1e-16 Score=160.67 Aligned_cols=134 Identities=13% Similarity=0.198 Sum_probs=101.6
Q ss_pred chHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCcccccccccC
Q 002960 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (862)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~~~~ 320 (862)
+..|+.|+++|++||++|+|+.|.|.+ ..|.++|.+||+|||+||||+ |......
T Consensus 45 ~~~~~~ll~~I~~A~~sI~i~~y~~~~-----------------~~i~~aL~~aa~rGV~Vrii~-D~~~~~~------- 99 (196)
T 4ggj_A 45 ESSLSRLLRALLAARSSLELCLFAFSS-----------------PQLGRAVQLLHQRGVRVRVIT-DCDYMAL------- 99 (196)
T ss_dssp CCHHHHHHHHHHTCSSEEEEEESCBCC-----------------HHHHHHHHHHHHTTCEEEEEE-SSCCC---------
T ss_pred HHHHHHHHHHHHHhheEEEEEEEEeCC-----------------HHHHHHHHHHHHcCCcEEEEE-ecccccc-------
Confidence 577999999999999999999998753 479999999999999999998 7532111
Q ss_pred CcccCCcHHHHhhhcCCCceEEecCCCCCCccccccccccccccccccceEEeccCCCCCCcceEEEEccccccCcccCC
Q 002960 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (862)
Q Consensus 321 ~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt 400 (862)
.......|...||+|..... ...+|.|++|||++ ++|+||.|++...+.
T Consensus 100 ------~~~~~~~l~~~gi~v~~~~~----------------~~~~H~K~~viD~~--------~~~~GS~N~t~~~~~- 148 (196)
T 4ggj_A 100 ------NGSQIGLLRKAGIQVRHDQD----------------LGYMHHKFAIVDKK--------VLITGSLNWTTQAIQ- 148 (196)
T ss_dssp -------CCHHHHHHHTTCEEEECCS----------------SSCCCCEEEEETTT--------EEEEESCCBCHHHHH-
T ss_pred ------cHHHHHHHHhcCCCcccccc----------------cccccCcEEEEcce--------EEEecCccCChhhhc-
Confidence 11234567788999875432 12479999999998 999999999874331
Q ss_pred CCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEeC-HHHHHHHHHHHHHHHhhcc
Q 002960 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG-PAAYDVLINFEQRWRKATK 461 (862)
Q Consensus 401 ~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~G-paa~dl~~~F~~rW~~~~~ 461 (862)
.. ++..+.+.. ++|..+.+.|.+.|+....
T Consensus 149 ------------------------------~n-~E~~~~i~~~~~~~~~~~~F~~~W~~~~p 179 (196)
T 4ggj_A 149 ------------------------------NN-RENVLIMEDTEYVRLFLEEFERIWEEFDP 179 (196)
T ss_dssp ------------------------------HC-CEEEEEECCHHHHHHHHHHHHHHHHHTCC
T ss_pred ------------------------------cc-ceeEEEEECHHHHHHHHHHHHHHHHhCCC
Confidence 11 244555555 4789999999999987543
No 17
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=99.66 E-value=7.6e-16 Score=146.88 Aligned_cols=112 Identities=18% Similarity=0.409 Sum_probs=94.8
Q ss_pred CCCceeEeeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEE
Q 002960 7 SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTV 86 (862)
Q Consensus 7 ~~~~~~~~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v 86 (862)
...+++-+..|.|.|+|++|++|+. +..+. +||||+|
T Consensus 10 ~~~~~~~~~~~~L~V~V~~a~~L~~-~~~g~------------------------------------------~DPyv~v 46 (134)
T 2b3r_A 10 AVKLSVSYRNGTLFIMVMHIKDLVT-EDGAD------------------------------------------PNPYVKT 46 (134)
T ss_dssp EEEEEEEEETTEEEEEEEEEECCCC-TTSCC------------------------------------------CCEEEEE
T ss_pred EEEEEEeecCCEEEEEEEEeeCCCC-CCCCC------------------------------------------CCeEEEE
Confidence 3445556788999999999999995 54443 8999999
Q ss_pred EE--C--CeEEEeeeeccCCCCCceeeEEEEe-ecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEE
Q 002960 87 VV--P--QATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWY 157 (862)
Q Consensus 87 ~l--~--~~~~~rT~vi~~t~~P~Wne~f~~~-v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~ 157 (862)
.+ + .....||++++++.||+|||+|.|. +... ...|.|+|||.+.++ +++||++.|++.++..+...+.||
T Consensus 47 ~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~ 126 (134)
T 2b3r_A 47 YLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWY 126 (134)
T ss_dssp EEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEE
T ss_pred EEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeE
Confidence 98 1 2345799999999999999999999 7643 468999999999998 899999999999999888899999
Q ss_pred EccC
Q 002960 158 DIIA 161 (862)
Q Consensus 158 ~l~~ 161 (862)
+|..
T Consensus 127 ~L~~ 130 (134)
T 2b3r_A 127 QLTA 130 (134)
T ss_dssp ECBC
T ss_pred ECCC
Confidence 9954
No 18
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.63 E-value=1.1e-15 Score=149.09 Aligned_cols=105 Identities=32% Similarity=0.535 Sum_probs=92.4
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--CeE
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~--~~~ 92 (862)
..+.|.|+|++|++|+.++..+. +||||+|.+. +..
T Consensus 40 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 77 (152)
T 1rsy_A 40 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK 77 (152)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEETTCCS
T ss_pred CCCEEEEEEEEeECCCCccCCCC------------------------------------------cCeEEEEEEEcCCCc
Confidence 45899999999999998886664 8999999993 234
Q ss_pred EEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccC
Q 002960 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (862)
Q Consensus 93 ~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~ 161 (862)
..||++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||++.|++.++..+...+.|++|..
T Consensus 78 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 78 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150 (152)
T ss_dssp CEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred eEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence 56999999999999999999998653 467999999999987 8999999999999988888999999954
No 19
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.62 E-value=1.7e-15 Score=147.09 Aligned_cols=107 Identities=22% Similarity=0.388 Sum_probs=92.8
Q ss_pred EeeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--
Q 002960 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (862)
Q Consensus 13 ~~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~-- 90 (862)
.+..|.|.|+|++|++|+.++..+. +||||+|.+..
T Consensus 27 ~~~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~ 64 (149)
T 1a25_A 27 HIDREVLIVVVRDAKNLVPMDPNGL------------------------------------------SDPYVKLKLIPDP 64 (149)
T ss_dssp EESSSEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEESCT
T ss_pred EecCCEEEEEEEEeeCCCCCCCCCC------------------------------------------cCeEEEEEEECCC
Confidence 3567899999999999998886665 89999999953
Q ss_pred --eEEEeeeeccCCCCCceeeEEEEeecCC--CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCC
Q 002960 91 --ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (862)
Q Consensus 91 --~~~~rT~vi~~t~~P~Wne~f~~~v~~~--~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~ 162 (862)
....||++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||++.|++.++..+ ..+.||+|...
T Consensus 65 ~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~ 140 (149)
T 1a25_A 65 KSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQ 140 (149)
T ss_dssp TCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCH
T ss_pred CCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccCC
Confidence 3457999999999999999999998764 357999999999997 89999999999999866 47899999653
No 20
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=99.62 E-value=1.8e-15 Score=150.53 Aligned_cols=107 Identities=23% Similarity=0.428 Sum_probs=93.5
Q ss_pred eeceEEEEEEEEeeCCCCCCC-CchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--
Q 002960 14 YLHGDLDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (862)
Q Consensus 14 ~l~g~L~v~I~~A~~L~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~-- 90 (862)
+..|.|.|+|++|++|+.+|. .+. +||||+|.+..
T Consensus 27 y~~~~L~V~v~~a~~L~~~d~~~g~------------------------------------------~DPyv~v~l~~~~ 64 (171)
T 2q3x_A 27 DKKGQLEVEVIRARSLTQKPGSKST------------------------------------------PAPYVKVYLLENG 64 (171)
T ss_dssp EETTEEEEEEEEEESCCCCC---CC------------------------------------------CEEEEEEEEEETT
T ss_pred ECCCEEEEEEEEeeCCCCCCcCCCC------------------------------------------CCceEEEEEECCC
Confidence 467899999999999998885 444 89999999843
Q ss_pred e--EEEeeeeccCCCCCceeeEEEEeecCCCceEEEEEE-ecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCC
Q 002960 91 A--TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK-DDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (862)
Q Consensus 91 ~--~~~rT~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~-d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~ 162 (862)
. ...||++++++.||+|||+|.|.+......|.|+|| |.|.++ +++||++.|++.++..+...+.||+|...
T Consensus 65 ~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 65 ACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp EEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred ccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 2 367999999999999999999999877788999999 999988 79999999999999888889999999644
No 21
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=99.62 E-value=1.2e-15 Score=147.05 Aligned_cols=104 Identities=33% Similarity=0.537 Sum_probs=91.6
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--CeE
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~--~~~ 92 (862)
-.+.|.|+|++|++|+.++..+. +||||+|.+. +..
T Consensus 32 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~ 69 (143)
T 3f04_A 32 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK 69 (143)
T ss_dssp TTTEEEEEEEEEECCCCBGGGBC------------------------------------------CCEEEEEEEESCCSC
T ss_pred CCCEEEEEEEEecCCCCCCCCCC------------------------------------------cCcEEEEEEECCCCc
Confidence 56889999999999998876554 8999999992 334
Q ss_pred EEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEcc
Q 002960 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (862)
Q Consensus 93 ~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~ 160 (862)
..||++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||++.+++.++..+...+.|++|.
T Consensus 70 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 141 (143)
T 3f04_A 70 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp CEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred cEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECc
Confidence 57999999999999999999998654 368999999999987 899999999999999998899999984
No 22
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.62 E-value=4.4e-15 Score=159.79 Aligned_cols=126 Identities=29% Similarity=0.491 Sum_probs=108.5
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--eE
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~--~~ 92 (862)
..|.|.|+|++|++|+.+|..+. +||||+|.+.. ..
T Consensus 17 ~~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~ 54 (284)
T 2r83_A 17 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK 54 (284)
T ss_dssp TTTEEEEEEEEEECCCCCSSSSS------------------------------------------CCEEEEEEEETCTTS
T ss_pred CCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCeEEEEEEEcCCCc
Confidence 56899999999999999887665 99999999943 34
Q ss_pred EEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCCCCCC
Q 002960 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (862)
Q Consensus 93 ~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~ 168 (862)
..||++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||++.+++.++..+...+.|++|....+....
T Consensus 55 ~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~ 134 (284)
T 2r83_A 55 KFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQE 134 (284)
T ss_dssp CEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCC
T ss_pred eEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeecccccccc
Confidence 56999999999999999999998753 368999999999987 89999999999999988889999999765544335
Q ss_pred CCceEEEEeeeecC
Q 002960 169 PGASIQLELKFTPC 182 (862)
Q Consensus 169 ~~g~l~l~l~~~~~ 182 (862)
..|+|+++++|.|.
T Consensus 135 ~~G~i~l~l~~~p~ 148 (284)
T 2r83_A 135 KLGDICFSLRYVPT 148 (284)
T ss_dssp CCCEEEEEEEEETT
T ss_pred ccccEEEEEEecCc
Confidence 68999999999874
No 23
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=99.61 E-value=2.4e-15 Score=143.48 Aligned_cols=107 Identities=22% Similarity=0.405 Sum_probs=92.5
Q ss_pred EeeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC---
Q 002960 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--- 89 (862)
Q Consensus 13 ~~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~--- 89 (862)
.+-.|.|.|+|++|++|+.++..+. +||||++.+.
T Consensus 12 ~~~~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~ 49 (137)
T 3rdl_A 12 EVTDEKLHVTVRDAKNLIPMDPNGL------------------------------------------SDPYVKLKLIPDP 49 (137)
T ss_dssp EEETTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEECCT
T ss_pred EEcCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCeeEEEEEEcCC
Confidence 3567999999999999999887665 8999999993
Q ss_pred -CeEEEeeeeccCCCCCceeeEEEEeecCC--CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCC
Q 002960 90 -QATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (862)
Q Consensus 90 -~~~~~rT~vi~~t~~P~Wne~f~~~v~~~--~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~ 162 (862)
+....||++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++.++..+. .++||+|...
T Consensus 50 ~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~l~i~v~d~d~~~~~~~iG~~~i~l~~l~~~~-~~~W~~L~~~ 125 (137)
T 3rdl_A 50 KNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMP-ASGWYKLLNQ 125 (137)
T ss_dssp TCCCCEECCCCCSCSSCEEEEEEEEECCGGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHSC-EEEEEECBCH
T ss_pred CCCeeecCceEcCCCCCCcccEEEEEcCchhcCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCc-cCceEECcCc
Confidence 33457999999999999999999998654 357999999999987 899999999999998665 7899999654
No 24
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.7e-15 Score=144.13 Aligned_cols=106 Identities=28% Similarity=0.467 Sum_probs=91.9
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--CeE
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~--~~~ 92 (862)
..+.|.|+|++|++|+.++..+. +||||+|.+. +..
T Consensus 24 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 61 (141)
T 2d8k_A 24 QESTLTVKIMKAQELPAKDFSGT------------------------------------------SDPFVKIYLLPDKKH 61 (141)
T ss_dssp SSCCEEEEEEEEESCCCCSSSSC------------------------------------------CCEEEEEEEESCCSS
T ss_pred CCCEEEEEEEEeECCCCCCCCCC------------------------------------------CCcEEEEEEECCCCc
Confidence 46889999999999998886664 8999999993 334
Q ss_pred EEeeeeccCCCCCceeeEEEEeecC----CCceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCC
Q 002960 93 VARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (862)
Q Consensus 93 ~~rT~vi~~t~~P~Wne~f~~~v~~----~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~ 162 (862)
..||++++++.||+|||+|.|.+.. ....|.|+|||.+.++ +++||++.|++.++..+...+.|++|...
T Consensus 62 ~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 136 (141)
T 2d8k_A 62 KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPS 136 (141)
T ss_dssp EEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred cEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence 6799999999999999999998533 2467999999999987 89999999999999988888999999543
No 25
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.60 E-value=7.8e-16 Score=148.03 Aligned_cols=108 Identities=28% Similarity=0.426 Sum_probs=92.8
Q ss_pred EeeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe-
Q 002960 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA- 91 (862)
Q Consensus 13 ~~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~- 91 (862)
.+..|.|.|+|++|++|+.+|..+. +||||+|.+...
T Consensus 14 ~y~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~~~~~~ 51 (142)
T 1rh8_A 14 NYDLGNLIIHILQARNLVPRDNNGY------------------------------------------SDPFVKVYLLPGR 51 (142)
T ss_dssp EEETTEEEEEEEEEESCCCCSSSSC------------------------------------------SCCEEEEEETTSS
T ss_pred EEcCCEEEEEEEEecCCCCCCCCCC------------------------------------------CCceEEEEEecCC
Confidence 3557899999999999999887665 899999999653
Q ss_pred ------------EEEeeeeccCCCCCceeeEEEEe-ecC---CCceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeE
Q 002960 92 ------------TVARTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELIS 154 (862)
Q Consensus 92 ------------~~~rT~vi~~t~~P~Wne~f~~~-v~~---~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~ 154 (862)
...||++++++.||+|||+|.|. +.. ....|.|+|||.+.++ +++||.+.|++.++..+...+
T Consensus 52 ~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~ 131 (142)
T 1rh8_A 52 GQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTP 131 (142)
T ss_dssp CCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCC
T ss_pred CcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCC
Confidence 24699999999999999999997 543 3468999999999997 899999999999998777788
Q ss_pred EEEEccCC
Q 002960 155 RWYDIIAP 162 (862)
Q Consensus 155 ~w~~l~~~ 162 (862)
.||+|...
T Consensus 132 ~W~~L~~~ 139 (142)
T 1rh8_A 132 RWYPLKEQ 139 (142)
T ss_dssp EEEECBCC
T ss_pred eEEECCcc
Confidence 99999543
No 26
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=147.83 Aligned_cols=107 Identities=16% Similarity=0.307 Sum_probs=90.8
Q ss_pred ceEEEEEEEEeeCCCCCC-CCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 002960 16 HGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (862)
Q Consensus 16 ~g~L~v~I~~A~~L~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~---- 90 (862)
.|.|.|+|++|++|+.++ ..+. +||||++.+..
T Consensus 22 ~~~L~V~v~~a~~L~~~d~~~~~------------------------------------------~dpyv~v~l~~~~~~ 59 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYADEAKKR------------------------------------------SNPYVKTYLLPDKSR 59 (148)
T ss_dssp TTEEEEEEEEEESCCCSBTTTTB------------------------------------------CCEEEEEEEETCCSG
T ss_pred CCEEEEEEEEecCCCCcccCCCC------------------------------------------CCeEEEEEEEcCCcc
Confidence 589999999999999877 3443 89999999942
Q ss_pred eEEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCC
Q 002960 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (862)
Q Consensus 91 ~~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~ 164 (862)
....||++++++.||+|||+|.|.+... ...|.|+|||.|.++ +++||++.|++.++..+...+.||+|....+
T Consensus 60 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~ 137 (148)
T 3fdw_A 60 QGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKIS 137 (148)
T ss_dssp GGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC--
T ss_pred cCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCccc
Confidence 2367999999999999999999998765 346999999999987 8999999999999987777889999965543
No 27
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=99.60 E-value=7.7e-16 Score=150.61 Aligned_cols=104 Identities=25% Similarity=0.415 Sum_probs=90.5
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---e
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---A 91 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~---~ 91 (862)
-.+.|.|+|++|++|+.+|..+. +||||++.+.. .
T Consensus 41 ~~~~L~V~Vi~a~~L~~~d~~g~------------------------------------------sDPyVkv~l~~~~~~ 78 (155)
T 2z0u_A 41 KNKQFAILIIQLSNLSALLQQQD------------------------------------------QKVNIRVAVLPCSES 78 (155)
T ss_dssp TTTEEEEEEEEEECGGGTCCSCC------------------------------------------SEEEEEEEEESCSCH
T ss_pred CCCEEEEEEEEccCcCCcccCCC------------------------------------------CCEEEEEEEecCCCC
Confidence 45799999999999999887665 89999999943 2
Q ss_pred --EEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeec-cCceeEEEEEcc
Q 002960 92 --TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-TGELISRWYDII 160 (862)
Q Consensus 92 --~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~-~g~~~~~w~~l~ 160 (862)
.+.||+++++++||+|||+|.|.+... ...|.|+|||.|.++ +++||++.|++.++. .+.....||+|+
T Consensus 79 ~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 79 TTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp HHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred CccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 367999999999999999999998754 357999999999988 899999999999985 467789999984
No 28
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.60 E-value=3.5e-15 Score=140.90 Aligned_cols=102 Identities=25% Similarity=0.455 Sum_probs=84.2
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEE----CC
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV----PQ 90 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l----~~ 90 (862)
..|.|.|+|++|++|+.++..+. +||||++.+ .+
T Consensus 16 ~~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~ 53 (129)
T 2bwq_A 16 VGHQLIVTILGAKDLPSREDGRP------------------------------------------RNPYVKIYFLPDRSD 53 (129)
T ss_dssp TTTEEEEEEEEEESCCCCTTSCC------------------------------------------BCEEEEEEEESSCSG
T ss_pred CCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCCEEEEEEecCCCC
Confidence 45899999999999998887664 899999999 23
Q ss_pred eEEEeeeeccCCCCCceeeEEEEeecC----CCceEEEEEEecCCCC---CeeeEEEEEeceeeccCceeEEEEEc
Q 002960 91 ATVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDI 159 (862)
Q Consensus 91 ~~~~rT~vi~~t~~P~Wne~f~~~v~~----~~~~l~~~v~d~d~~~---~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (862)
....||++++++.||+|||+|.|.+.+ ....|.|+|||.+.++ +++||++.+++.++.... .+.||+|
T Consensus 54 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 54 KNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp GGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred CcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 456799999999999999999999643 2467999999999987 899999999999987544 7899998
No 29
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.58 E-value=3e-15 Score=143.54 Aligned_cols=106 Identities=25% Similarity=0.419 Sum_probs=89.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC----Ce
Q 002960 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----QA 91 (862)
Q Consensus 16 ~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~----~~ 91 (862)
.+.|.|+|++|++|+.++..+. +||||+|.+. ..
T Consensus 20 ~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~~ 57 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSREDGRP------------------------------------------RNPYVKIYFLPDRSDK 57 (141)
T ss_dssp TTEEEEEEEEEESCCCCSSSCC------------------------------------------CCEEEECCCSSCCSSS
T ss_pred CCEEEEEEEEccCCCCcCCCCC------------------------------------------CCCEEEEEEecCCCCC
Confidence 5789999999999999887665 8999999982 23
Q ss_pred EEEeeeeccCCCCCceeeEEEEeecC-C---CceEEEEEEecCCCC---CeeeEEEEEeceeeccCceeEEEEEccCCCC
Q 002960 92 TVARTRVLKNSQEPVWNEHFNIPLAH-P---LSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (862)
Q Consensus 92 ~~~rT~vi~~t~~P~Wne~f~~~v~~-~---~~~l~~~v~d~d~~~---~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~ 164 (862)
...||++++++.||+|||+|.|.+.+ . ...|.|+|||.+.++ +++||++.|++.++.... .+.||+|.....
T Consensus 58 ~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~~ 136 (141)
T 1v27_A 58 NKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTHDS 136 (141)
T ss_dssp SCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCSS
T ss_pred cceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECccccc
Confidence 45799999999999999999999533 2 367999999999987 799999999999987544 789999976543
No 30
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=99.58 E-value=7.6e-15 Score=143.15 Aligned_cols=111 Identities=22% Similarity=0.381 Sum_probs=92.2
Q ss_pred ceeEeeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC
Q 002960 10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (862)
Q Consensus 10 ~~~~~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~ 89 (862)
+.+..-.|.|.|+|++|++|+.++ .+. +||||+|.+.
T Consensus 20 L~y~~~~~~L~V~v~~a~~L~~~d-~g~------------------------------------------~Dpyv~v~l~ 56 (153)
T 3fbk_A 20 LSIDAQDRVLLLHIIEGKGLISKQ-PGT------------------------------------------CDPYVKISLI 56 (153)
T ss_dssp EEEEESSSEEEEEEEEEESCCCCS-SSC------------------------------------------CCEEEEEEEE
T ss_pred EEEECCCCEEEEEEEEeeCCCCCC-CCC------------------------------------------CCEEEEEEEE
Confidence 344566789999999999999887 444 8999999982
Q ss_pred ----CeEEEeeeeccCCCCCceeeEEEEee--cCCCceEEEEEEecCCCC--CeeeEEEEEeceeecc-CceeEEEEEcc
Q 002960 90 ----QATVARTRVLKNSQEPVWNEHFNIPL--AHPLSNLEIQVKDDDVFG--AQIIGTAAIPAHTIAT-GELISRWYDII 160 (862)
Q Consensus 90 ----~~~~~rT~vi~~t~~P~Wne~f~~~v--~~~~~~l~~~v~d~d~~~--~~~iG~~~i~l~~l~~-g~~~~~w~~l~ 160 (862)
.....||++++++.||+|||+|.|.+ ......|.|+|||.+.++ +++||++.|++.++.. +...+.||+|.
T Consensus 57 ~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~ 136 (153)
T 3fbk_A 57 PEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLL 136 (153)
T ss_dssp SCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECB
T ss_pred cCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECC
Confidence 22457999999999999999999998 344456999999999875 7999999999999984 77889999996
Q ss_pred CCC
Q 002960 161 APS 163 (862)
Q Consensus 161 ~~~ 163 (862)
...
T Consensus 137 ~~~ 139 (153)
T 3fbk_A 137 GEH 139 (153)
T ss_dssp CTT
T ss_pred Chh
Confidence 543
No 31
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.58 E-value=6.2e-15 Score=141.24 Aligned_cols=103 Identities=18% Similarity=0.279 Sum_probs=88.0
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEE---CCe
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV---PQA 91 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l---~~~ 91 (862)
..+.|.|+|++|+ ++|..+. +||||+|.+ ++.
T Consensus 24 ~~~~L~V~v~~a~---~~d~~g~------------------------------------------sDPyv~v~l~~~~~~ 58 (138)
T 1wfm_A 24 QKAELFVTRLEAV---TSNHDGG------------------------------------------CDCYVQGSVANRTGS 58 (138)
T ss_dssp TTTEEEEEEEEEE---CCCCSSC------------------------------------------CCEEEEEEEEETTEE
T ss_pred CCCEEEEEEEEEE---cCCCCCC------------------------------------------cceEEEEEEEcCCCc
Confidence 3689999999999 3555554 899999999 344
Q ss_pred EEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCC
Q 002960 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (862)
Q Consensus 92 ~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~ 162 (862)
...||+|+++++||+|||+|.|.+... ...|.|+|||.|.++ +++||++.+++.++..+...+.|++|...
T Consensus 59 ~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~ 133 (138)
T 1wfm_A 59 VEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133 (138)
T ss_dssp EEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred ccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcCC
Confidence 567999999999999999999998764 357999999999988 89999999999999877778899999654
No 32
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=99.57 E-value=7.6e-15 Score=141.13 Aligned_cols=104 Identities=29% Similarity=0.467 Sum_probs=90.7
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~---- 90 (862)
..+.|.|+|++|++|+.++..+. +||||+|.+..
T Consensus 27 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 64 (142)
T 2chd_A 27 DNSNLQCTIIRAKGLKPMDSNGL------------------------------------------ADPYVKLHLLPGASK 64 (142)
T ss_dssp GGTEEEEEEEEEESCCCCCTTSC------------------------------------------CCEEEEEEEESCCSG
T ss_pred CCCEEEEEEEEecCCCCCCCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence 56899999999999998886654 89999999954
Q ss_pred eEEEeeeeccCCCCCceeeEEEEe-ecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEcc
Q 002960 91 ATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (862)
Q Consensus 91 ~~~~rT~vi~~t~~P~Wne~f~~~-v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~ 160 (862)
....||++++++.||+|||+|.|. +... ...|.|+|||.+.++ +++||++.|++.++..++....|++|-
T Consensus 65 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 139 (142)
T 2chd_A 65 SNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLE 139 (142)
T ss_dssp GGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECB
T ss_pred cceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEecc
Confidence 356799999999999999999998 5433 257999999999998 799999999999999888888899884
No 33
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.56 E-value=1.3e-14 Score=141.51 Aligned_cols=135 Identities=16% Similarity=0.250 Sum_probs=105.5
Q ss_pred chHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCcccccccccC
Q 002960 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (862)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~~~~ 320 (862)
...++.+.++|++|+++|+|+.|.|.+ ..|.++|.+|++|||+|+||+ +......
T Consensus 13 ~~~~~~~~~~i~~A~~~I~i~~~~~~~-----------------~~i~~aL~~a~~rGV~Vril~-~~~~~~~------- 67 (155)
T 1byr_A 13 GSARVLVLSAIDSAKTSIRMMAYSFTA-----------------PDIMKALVAAKKRGVDVKIVI-DERGNTG------- 67 (155)
T ss_dssp THHHHHHHHHHHHCSSEEEEEESSBCC-----------------HHHHHHHHHHHHTTCEEEEEE-ESTTCCS-------
T ss_pred CcHHHHHHHHHHHHhhEEEEEEEEeCC-----------------HHHHHHHHHHHHCCCEEEEEE-eCccccc-------
Confidence 457999999999999999999987732 479999999999999999998 5443211
Q ss_pred CcccCCcHHHHhhhcCCCceEEecCCCCCCccccccccccccccccccceEEeccCCCCCCcceEEEEccccccCcccCC
Q 002960 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (862)
Q Consensus 321 ~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt 400 (862)
.......+.|...|+++...... ..+|.|++|||++ ++++||.|++...+
T Consensus 68 ----~~~~~~~~~L~~~gv~v~~~~~~----------------~~~H~K~~iiD~~--------~~~iGS~N~~~~~~-- 117 (155)
T 1byr_A 68 ----RASIAAMNYIANSGIPLRTDSNF----------------PIQHDKVIIVDNV--------TVETGSFNFTKAAE-- 117 (155)
T ss_dssp ----HHHHHHHHHHHHTTCCEEEECSS----------------SCCCCCEEEETTT--------EEEEESCCBSHHHH--
T ss_pred ----cccHHHHHHHHHCCCeEEEcCCc----------------ccccceEEEECCC--------EEEEECCCCCcccc--
Confidence 01224556677889998764321 2489999999998 99999999987322
Q ss_pred CCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEeCH--HHHHHHHHHHHHHHhhc
Q 002960 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP--AAYDVLINFEQRWRKAT 460 (862)
Q Consensus 401 ~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gp--aa~dl~~~F~~rW~~~~ 460 (862)
..|++..+.+.|+ .+.++...|.+.|+.+.
T Consensus 118 ------------------------------~~n~E~~~~i~~~~~l~~~~~~~f~~~w~~~~ 149 (155)
T 1byr_A 118 ------------------------------TKNSENAVVIWNMPKLAESFLEHWQDRWNQGR 149 (155)
T ss_dssp ------------------------------HTSCEEEEEEESCHHHHHHHHHHHHHHHHTCE
T ss_pred ------------------------------ccCcccEEEEcCcHHHHHHHHHHHHHHHHhCC
Confidence 2467899999993 78999999999998754
No 34
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=99.56 E-value=1.4e-14 Score=138.29 Aligned_cols=106 Identities=27% Similarity=0.431 Sum_probs=86.4
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~---- 90 (862)
-.|.|.|+|++|++|+.++..+. +||||++.+..
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 51 (138)
T 3n5a_A 14 SANSIIVNIIKARNLKAMDIGGT------------------------------------------SDPYVKVWLMYKDKR 51 (138)
T ss_dssp TTTEEEEEEEEEESCCCCBTTTB------------------------------------------CCEEEEEEEEETTEE
T ss_pred CCCeEEEEEEEeeCCCCcCCCCC------------------------------------------cCeEEEEEEEeCCCc
Confidence 45899999999999998887654 89999999953
Q ss_pred eEEEeeeeccCCCCCceeeEEEEeecCCC---ceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCC
Q 002960 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (862)
Q Consensus 91 ~~~~rT~vi~~t~~P~Wne~f~~~v~~~~---~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~ 164 (862)
....||++++++.||+|||+|.|.+.... ..|.|+|||.+.++ +++||++.|++.++. ...+.|++|+...+
T Consensus 52 ~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~--~~~~~W~~l~~~~~ 127 (138)
T 3n5a_A 52 VEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP--GEVKHWKDMIARPR 127 (138)
T ss_dssp EEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH--HHHHHHHHHHHSTT
T ss_pred cceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccCC--hHHHHHHHHHhCCC
Confidence 24679999999999999999999987654 57999999999987 899999999998643 22344555544433
No 35
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=99.56 E-value=1.7e-14 Score=141.49 Aligned_cols=105 Identities=27% Similarity=0.441 Sum_probs=88.7
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~---- 90 (862)
..|.|.|+|++|++|+.+|..+. +||||+|.+..
T Consensus 23 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~ 60 (159)
T 1tjx_A 23 TAGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKR 60 (159)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEEETTEE
T ss_pred CCCEEEEEEEEeeCCCCccCCCC------------------------------------------CCeEEEEEEEeCCce
Confidence 56899999999999999887665 89999999842
Q ss_pred eEEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceee------------ccCceeE
Q 002960 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTI------------ATGELIS 154 (862)
Q Consensus 91 ~~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l------------~~g~~~~ 154 (862)
....||++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||.+.|++..+ ..+..++
T Consensus 61 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~ 140 (159)
T 1tjx_A 61 LKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 140 (159)
T ss_dssp EEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEE
T ss_pred eceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeee
Confidence 2467999999999999999999998754 356999999999987 89999999999853 1345678
Q ss_pred EEEEccC
Q 002960 155 RWYDIIA 161 (862)
Q Consensus 155 ~w~~l~~ 161 (862)
.|++|..
T Consensus 141 ~W~~L~~ 147 (159)
T 1tjx_A 141 QWHTLQV 147 (159)
T ss_dssp EEEECBC
T ss_pred eEEECcC
Confidence 9999854
No 36
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=99.55 E-value=2.2e-14 Score=141.81 Aligned_cols=91 Identities=29% Similarity=0.405 Sum_probs=80.1
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~---- 90 (862)
..+.|.|+|++|++|+.+|..+. +||||+|.+..
T Consensus 35 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~~ 72 (166)
T 2cm5_A 35 QQGGLIVGIIRCVHLAAMDANGY------------------------------------------SDPFVKLWLKPDMGK 72 (166)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEETC---
T ss_pred CCCEEEEEEEEeECCCCccCCCC------------------------------------------CCcEEEEEEECCCCc
Confidence 46899999999999999887664 89999999964
Q ss_pred eEEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceee
Q 002960 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTI 147 (862)
Q Consensus 91 ~~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l 147 (862)
....||++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||++.|++.++
T Consensus 73 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~ 133 (166)
T 2cm5_A 73 KAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 133 (166)
T ss_dssp CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred cceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccC
Confidence 3567999999999999999999998753 357999999999997 89999999999875
No 37
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=9.9e-15 Score=140.31 Aligned_cols=105 Identities=23% Similarity=0.421 Sum_probs=88.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--Ce--
Q 002960 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QA-- 91 (862)
Q Consensus 16 ~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~--~~-- 91 (862)
.+.|.|+|++|++|+.++..+ +||||+|.+. +.
T Consensus 23 ~~~L~v~v~~a~~L~~~d~~g-------------------------------------------~dpyv~v~l~~~~~~~ 59 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSEDG-------------------------------------------SDPYVRMYLLPDKRRS 59 (142)
T ss_dssp TTEEEEEEEEEECCCCSSTTC-------------------------------------------CCEEEEEEEESCCCSS
T ss_pred CCEEEEEEEEeECCCCCCCCC-------------------------------------------CCeeEEEEEEcCCCCC
Confidence 678999999999999876433 7999999983 22
Q ss_pred EEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC---CeeeEEEEEeceeeccCceeEEEEEccCCC
Q 002960 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (862)
Q Consensus 92 ~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~---~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~ 163 (862)
...||++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||++.|++.++..+...+.|++|....
T Consensus 60 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~ 137 (142)
T 2dmg_A 60 GRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDS 137 (142)
T ss_dssp SCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSC
T ss_pred CcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCCC
Confidence 456999999999999999999998653 347999999999875 369999999999998777888999996554
No 38
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.54 E-value=2.2e-14 Score=137.18 Aligned_cols=105 Identities=29% Similarity=0.426 Sum_probs=88.2
Q ss_pred eceEEEEEEEEeeCCCCCCCC-chhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--Ce
Q 002960 15 LHGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QA 91 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~--~~ 91 (862)
..+.|.|+|++|++|+.+|.. +. +||||+|.+. +.
T Consensus 20 ~~~~L~v~v~~a~~L~~~d~~~~~------------------------------------------~dpyv~v~~~~~~~ 57 (138)
T 1ugk_A 20 ERKAFVVNIKEARGLPAMDEQSMT------------------------------------------SDPYIKMTILPEKK 57 (138)
T ss_dssp GGTEEEEEEEEEESCCCCBTTTTB------------------------------------------CEEEEEEEEETTTC
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCC------------------------------------------CCCEEEEEEecCCC
Confidence 568899999999999988864 43 8999999994 33
Q ss_pred EEEeeeeccCCCCCceeeEEEEe-ecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCce-eEEEEEccC
Q 002960 92 TVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-ISRWYDIIA 161 (862)
Q Consensus 92 ~~~rT~vi~~t~~P~Wne~f~~~-v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~-~~~w~~l~~ 161 (862)
...||++++++.||+|||+|.|. +... ...|.|+|||.+.++ +++||++.|++.++..+.. ...|++|..
T Consensus 58 ~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~ 133 (138)
T 1ugk_A 58 HKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133 (138)
T ss_dssp SEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred ceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence 56799999999999999999996 6543 357999999999987 8999999999999986544 456788853
No 39
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=99.54 E-value=5.4e-15 Score=144.08 Aligned_cols=103 Identities=27% Similarity=0.417 Sum_probs=80.6
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEE--CCeE
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV--PQAT 92 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l--~~~~ 92 (862)
..+.|.|+|++|++|+.++..+. +||||+|.+ ++..
T Consensus 28 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 65 (153)
T 1w15_A 28 TTNTLTVVVLKARHLPKSDVSGL------------------------------------------SDPYVKVNLYHAKKR 65 (153)
T ss_dssp TTTEEEEEEEEEESCC------C------------------------------------------CCEEEEEEEEETTEE
T ss_pred CCCEEEEEEEEeECCCCcCCCCC------------------------------------------CCeEEEEEEEeCCeE
Confidence 46899999999999998886664 899999999 4432
Q ss_pred --EEeeeeccCCCCCceeeEEEEeecCCC---ceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccC
Q 002960 93 --VARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (862)
Q Consensus 93 --~~rT~vi~~t~~P~Wne~f~~~v~~~~---~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~ 161 (862)
..||++++++.||+|||+|.|.+.... ..|.|+|||.+.++ +++||++.|++.+ .+...+.|++|+.
T Consensus 66 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 138 (153)
T 1w15_A 66 ISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA--EGSGGGHWKEICD 138 (153)
T ss_dssp EEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHHH
T ss_pred eceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC--CchHHHHHHHHHh
Confidence 569999999999999999999987653 57899999999987 8999999999987 2333445555544
No 40
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1e-14 Score=141.17 Aligned_cols=110 Identities=26% Similarity=0.467 Sum_probs=88.2
Q ss_pred eceEEEEEEEEeeCCCC-CCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--e
Q 002960 15 LHGDLDLKIIRARRLPN-MDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A 91 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~--~ 91 (862)
..|.|.|+|++|++|+. ++..+. +.. ...+||||+|.+.. .
T Consensus 24 ~~~~L~V~v~~a~~L~~~~d~~g~--~~~----------------------------------~~~~dpyv~v~l~~~~~ 67 (147)
T 2enp_A 24 LHNHLTVRVIEARDLPPPISHDGS--RQD----------------------------------MAHSNPYVKICLLPDQK 67 (147)
T ss_dssp TTTEEEEEEEEEECCCCSCSSCCS--SCT----------------------------------TCCCCCEEEEEEETCCS
T ss_pred CCCEEEEEEEEEeCCCCccccccc--ccc----------------------------------CCCCCcEEEEEEEeCCC
Confidence 46899999999999997 354321 000 00189999999952 2
Q ss_pred EEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEcc
Q 002960 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (862)
Q Consensus 92 ~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~ 160 (862)
...||++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||++.|++.++..+.....|++|.
T Consensus 68 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~ 140 (147)
T 2enp_A 68 NSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALI 140 (147)
T ss_dssp SCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCB
T ss_pred cceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEee
Confidence 456999999999999999999998753 357999999999988 899999999999998777778899884
No 41
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.50 E-value=5.7e-14 Score=145.43 Aligned_cols=154 Identities=14% Similarity=0.134 Sum_probs=106.0
Q ss_pred CCcchHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCccccccc
Q 002960 238 YKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGV 317 (862)
Q Consensus 238 y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~ 317 (862)
|-+.+.++.|+++|++||++|+|+.|.|.+ ..|.++|.+||+|||+||||+ |...+...
T Consensus 54 ~~~~~~~~~ii~~I~~A~~sI~i~~Y~~~~-----------------~~I~~aL~~Aa~RGV~VRii~-D~~~~~~~--- 112 (220)
T 4gel_A 54 HCSLRNVAKIVEQIDRAVYSIDLAIYTFTS-----------------LFLADSIKRALQRGVIIRIIS-DGEMVYSK--- 112 (220)
T ss_dssp TCHHHHHHHHHHHHHTCSSEEEEECSCBCC-----------------HHHHHHHHHHHHHTCEEEEEC-CTTTTTST---
T ss_pred cCcHHHHHHHHHHHHHhhhEEEEEEEEeCC-----------------HHHHHHHHHHHHcCCeEEEEE-echhhhhh---
Confidence 334678999999999999999999998743 489999999999999999998 87643221
Q ss_pred ccCCcccCCcHHHHhhhcCCCceEEecCCCCC--Cccccccc--cccccccccccceEEeccCCCCCCcceEEEEccccc
Q 002960 318 KTPGVMATHDEETKKFFKHSSVNCVLAPRYAS--SKLSYFKQ--QIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDL 393 (862)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~--~~~~~~~~--~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl 393 (862)
......+...++.+........ .+.-++.. ...+...++|.|++|+|++ ++++||.|+
T Consensus 113 ----------~~~~~~~~~~~~~~~~~~~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~D~~--------~v~~GS~N~ 174 (220)
T 4gel_A 113 ----------GSQISMLAQLGVPVRVPITTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCYS--------IVISGSVNW 174 (220)
T ss_dssp ----------TCHHHHHHHTTCCEEECCSSSCBCCCEEEESCHHHHHHHHHHTTCSCCCCCCC--------EEEEESCCB
T ss_pred ----------HHHHHHHHhcCCcEEeecccccccceeEEEcchhcccccccccceeccccccc--------eEEecCccc
Confidence 0122333445555543211110 00001100 0112335678888888887 999999998
Q ss_pred cCcccCCCCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEeCHHHHHHHHHHHHHHHhhcc
Q 002960 394 CDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATK 461 (862)
Q Consensus 394 ~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~ 461 (862)
+.... ...|.|+.+...|++|..+.+.|.+.|+....
T Consensus 175 t~~s~-------------------------------~~N~E~~~vi~~~~~a~~~~~~F~~~W~~~~~ 211 (220)
T 4gel_A 175 TALGL-------------------------------GGNWENCIITADDKLTATFQAEFQRMWRAFAK 211 (220)
T ss_dssp SHHHH-------------------------------HTSBEEEEEECCHHHHHHHHHHHHHHHHHSEE
T ss_pred ccccc-------------------------------ccCceEEEEEECHHHHHHHHHHHHHHHHhccC
Confidence 87322 13577888888899999999999999987543
No 42
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=99.50 E-value=1.1e-13 Score=130.33 Aligned_cols=101 Identities=20% Similarity=0.272 Sum_probs=90.6
Q ss_pred CCcEEEEEECCeEEEeeeecc-CCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeE
Q 002960 80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELIS 154 (862)
Q Consensus 80 ~dpYv~v~l~~~~~~rT~vi~-~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~ 154 (862)
+|||+++.+.+.+ .+|++++ ++.||+|||.|.+++..+ .+.|.|.|+|.+.++ +.+||++.++|.++..++...
T Consensus 37 ~Dp~akv~FRg~k-~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~~l~ 115 (144)
T 3l9b_A 37 ADRIAKVTFRGQS-FYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVE 115 (144)
T ss_dssp EEEEEEEEETTEE-EECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEEEEEEEEESHHHHHHSEEE
T ss_pred CCCeEEEEEeccc-eeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCCEEEEEEEEhHHhccCCeEE
Confidence 8999999998866 4999998 699999999999998865 467899999999988 899999999999999888888
Q ss_pred EEEEccCCCCCCCCCCceEEEEeeeecCC
Q 002960 155 RWYDIIAPSGSPPKPGASIQLELKFTPCD 183 (862)
Q Consensus 155 ~w~~l~~~~~~~~~~~g~l~l~l~~~~~~ 183 (862)
.+-+|++.++++. .++|.++++|.|.+
T Consensus 116 l~~~LvD~n~~~~--~a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 116 VSDTLIDDNNAII--KTSLSMEVRYQAAD 142 (144)
T ss_dssp EEEEEECTTSCEE--EEEEEEEEEEEETT
T ss_pred EeecccCCCCCcc--ccEEEEEEEecCCC
Confidence 8899999998874 58999999999953
No 43
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.48 E-value=1.4e-13 Score=149.12 Aligned_cols=124 Identities=24% Similarity=0.397 Sum_probs=100.3
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEE--CCeE
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV--PQAT 92 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l--~~~~ 92 (862)
-.|.|.|+|++|++|+.+|..+. +||||+|.+ ++..
T Consensus 18 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dPyv~v~l~~~~~~ 55 (296)
T 1dqv_A 18 GSDQLVVRILQALDLPAKDSNGF------------------------------------------SDPYVKIYLLPDRKK 55 (296)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSC------------------------------------------CCEEEEEECTTSTTS
T ss_pred CCCEEEEEEEEeECCCCcCCCCC------------------------------------------cCeEEEEEEEcCCCe
Confidence 35899999999999999887665 899999999 2334
Q ss_pred EEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEe-ceeecc-CceeEEEEEccCCCCCC
Q 002960 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIP-AHTIAT-GELISRWYDIIAPSGSP 166 (862)
Q Consensus 93 ~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~-l~~l~~-g~~~~~w~~l~~~~~~~ 166 (862)
..||++++++.||+|||+|.|.+... ...|.|+|||.|.++ +++||++.++ +.++.. +.....|++|....++.
T Consensus 56 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~ 135 (296)
T 1dqv_A 56 KFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEK 135 (296)
T ss_dssp CEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCC
T ss_pred eEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeeccccccccc
Confidence 56999999999999999999998654 347899999999987 8999999996 444432 34467899996544332
Q ss_pred CCCCceEEEEeeeec
Q 002960 167 PKPGASIQLELKFTP 181 (862)
Q Consensus 167 ~~~~g~l~l~l~~~~ 181 (862)
...|+|.+++.|.|
T Consensus 136 -~~~G~i~vsl~y~~ 149 (296)
T 1dqv_A 136 -ADLGELNFSLCYLP 149 (296)
T ss_dssp -SCCCEEEEEEEEET
T ss_pred -cccceEEEEEEecc
Confidence 45799999999976
No 44
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.47 E-value=2e-13 Score=133.04 Aligned_cols=135 Identities=17% Similarity=0.136 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCcc
Q 002960 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (862)
Q Consensus 560 ~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Peg~~~~~~ 639 (862)
.++.++++++|++|+++|+|+++||.. ..+..+|.++.++ ||+|+|+++..+. .
T Consensus 13 ~~~~~~~~~~i~~A~~~I~i~~~~~~~------------------~~i~~aL~~a~~r--GV~Vril~~~~~~----~-- 66 (155)
T 1byr_A 13 GSARVLVLSAIDSAKTSIRMMAYSFTA------------------PDIMKALVAAKKR--GVDVKIVIDERGN----T-- 66 (155)
T ss_dssp THHHHHHHHHHHHCSSEEEEEESSBCC------------------HHHHHHHHHHHHT--TCEEEEEEESTTC----C--
T ss_pred CcHHHHHHHHHHHHhhEEEEEEEEeCC------------------HHHHHHHHHHHHC--CCEEEEEEeCccc----c--
Confidence 468899999999999999999998842 2466677777665 5999999986421 0
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEeeCCCcCCCCcccccCCCCcccccccccceeeEEEeEEEEEe
Q 002960 640 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD 719 (862)
Q Consensus 640 ~~~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVD 719 (862)
.+..+ ...+.|.+.|+++ .+|.. ...+|+|+||||
T Consensus 67 -----~~~~~-------~~~~~L~~~gv~v------~~~~~---------------------------~~~~H~K~~iiD 101 (155)
T 1byr_A 67 -----GRASI-------AAMNYIANSGIPL------RTDSN---------------------------FPIQHDKVIIVD 101 (155)
T ss_dssp -----SHHHH-------HHHHHHHHTTCCE------EEECS---------------------------SSCCCCCEEEET
T ss_pred -----ccccH-------HHHHHHHHCCCeE------EEcCC---------------------------cccccceEEEEC
Confidence 01111 2356777888864 22210 126799999999
Q ss_pred eeEEEecCcCccccccCCCCCcceEEEeeCC-ccccccccCCCCchHHHHHHHHHHHh
Q 002960 720 DEYVIMGSANINQRSMAGSKDTEIAMGSYQP-HHTWARKLKHPHGQIYGYRKSLWSEH 776 (862)
Q Consensus 720 D~~~iIGSANln~RSm~g~~DsEi~v~i~d~-~~~~~~~~~~~~~~~~~lR~~Lw~eH 776 (862)
|+++++||+||+.||+..| .|+++.+.++ +.+ ......-.++|...
T Consensus 102 ~~~~~iGS~N~~~~~~~~n--~E~~~~i~~~~~l~---------~~~~~~f~~~w~~~ 148 (155)
T 1byr_A 102 NVTVETGSFNFTKAAETKN--SENAVVIWNMPKLA---------ESFLEHWQDRWNQG 148 (155)
T ss_dssp TTEEEEESCCBSHHHHHTS--CEEEEEEESCHHHH---------HHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCccccccC--cccEEEEcCcHHHH---------HHHHHHHHHHHHhC
Confidence 9999999999999999855 9999999884 433 12344455667543
No 45
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.45 E-value=5.2e-13 Score=126.67 Aligned_cols=96 Identities=22% Similarity=0.391 Sum_probs=67.8
Q ss_pred CCcEEEEEECCeEEEeeeecc-CCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeeccCc--eeEE
Q 002960 80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE--LISR 155 (862)
Q Consensus 80 ~dpYv~v~l~~~~~~rT~vi~-~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~--~~~~ 155 (862)
+||||+|.. . . .||++++ ++.||+|||+|.|.+......|.|+|||+| ++ +++||++.||+.++.... ....
T Consensus 23 ~DPYv~v~~-~-~-~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~l~~l~~~~~~~~~~ 98 (131)
T 2cjt_A 23 FNTYVTLKV-Q-N-VKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSNEEGPGE 98 (131)
T ss_dssp CEEEEEEEE-T-T-EEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEEEEEEEEEGGGSCBCSSCCCCE
T ss_pred cCeEEEEEe-c-C-EEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCeEEEEEEEHHHhhhcCCCCccc
Confidence 899999993 2 2 3666665 699999999999999988788999999999 65 899999999999886432 1123
Q ss_pred EEEc----cCCCCCC----CCCCceEEEEeee
Q 002960 156 WYDI----IAPSGSP----PKPGASIQLELKF 179 (862)
Q Consensus 156 w~~l----~~~~~~~----~~~~g~l~l~l~~ 179 (862)
|.++ ..++|+. ....+.+.+.++|
T Consensus 99 ~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~ 130 (131)
T 2cjt_A 99 WLTLDSQAIMADSEICGTKDPTFHRILLDAHF 130 (131)
T ss_dssp EEECBC----------CCSCCCCCEEEEEEEE
T ss_pred cEEcccccccCCCcCcceECCCccEEEEEEEe
Confidence 4444 2233321 2235567777776
No 46
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.44 E-value=1.3e-13 Score=140.07 Aligned_cols=133 Identities=17% Similarity=0.117 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCcc
Q 002960 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (862)
Q Consensus 560 ~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Peg~~~~~~ 639 (862)
.+....++++|++|+++|+|+..+|.. .+++.+|.+|.++ ||+|+||+...-.. .
T Consensus 45 ~~~~~~ll~~I~~A~~sI~i~~y~~~~------------------~~i~~aL~~aa~r--GV~Vrii~D~~~~~--~--- 99 (196)
T 4ggj_A 45 ESSLSRLLRALLAARSSLELCLFAFSS------------------PQLGRAVQLLHQR--GVRVRVITDCDYMA--L--- 99 (196)
T ss_dssp CCHHHHHHHHHHTCSSEEEEEESCBCC------------------HHHHHHHHHHHHT--TCEEEEEESSCCC-------
T ss_pred HHHHHHHHHHHHHhheEEEEEEEEeCC------------------HHHHHHHHHHHHc--CCcEEEEEeccccc--c---
Confidence 345678999999999999999855542 3577788887665 49999999632100 0
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEeeCCCcCCCCcccccCCCCcccccccccceeeEEEeEEEEEe
Q 002960 640 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD 719 (862)
Q Consensus 640 ~~~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVD 719 (862)
.. ...+.|.++|+++ .++. ...++|+|+||||
T Consensus 100 --------~~-------~~~~~l~~~gi~v------~~~~---------------------------~~~~~H~K~~viD 131 (196)
T 4ggj_A 100 --------NG-------SQIGLLRKAGIQV------RHDQ---------------------------DLGYMHHKFAIVD 131 (196)
T ss_dssp ---------C-------CHHHHHHHTTCEE------EECC---------------------------SSSCCCCEEEEET
T ss_pred --------cH-------HHHHHHHhcCCCc------cccc---------------------------ccccccCcEEEEc
Confidence 00 1245677889854 1120 0235799999999
Q ss_pred eeEEEecCcCccccccCCCCCcceEEEeeCCccccccccCCCCchHHHHHHHHHHHh
Q 002960 720 DEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQIYGYRKSLWSEH 776 (862)
Q Consensus 720 D~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~~~~~~~~~~~~~~~lR~~Lw~eH 776 (862)
++++++||+||+.+|+..| .|..+.++|++.+. .....=.++|.+.
T Consensus 132 ~~~~~~GS~N~t~~~~~~n--~E~~~~i~~~~~~~---------~~~~~F~~~W~~~ 177 (196)
T 4ggj_A 132 KKVLITGSLNWTTQAIQNN--RENVLIMEDTEYVR---------LFLEEFERIWEEF 177 (196)
T ss_dssp TTEEEEESCCBCHHHHHHC--CEEEEEECCHHHHH---------HHHHHHHHHHHHT
T ss_pred ceEEEecCccCChhhhccc--ceeEEEEECHHHHH---------HHHHHHHHHHHhC
Confidence 9999999999999999865 99999998875441 2233445678654
No 47
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=99.42 E-value=6.6e-13 Score=157.24 Aligned_cols=120 Identities=24% Similarity=0.443 Sum_probs=102.5
Q ss_pred eceEEEEEEEEeeCCCCCCC--CchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--
Q 002960 15 LHGDLDLKIIRARRLPNMDM--MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~-- 90 (862)
..++|.|+|++|++|+.++. .+. +||||+|.+.+
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~------------------------------------------~DPYV~V~l~g~~ 532 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSI------------------------------------------VDPKVIVEIHGVG 532 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSC------------------------------------------CCEEEEEEEESSG
T ss_pred cceEEEEEEEEcCCCCcccccccCC------------------------------------------CCcEEEEEEecCC
Confidence 45889999999999998763 222 89999999943
Q ss_pred --eEEEeeeeccCC-CCCceeeEEEEeecCCC-ceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCCC
Q 002960 91 --ATVARTRVLKNS-QEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (862)
Q Consensus 91 --~~~~rT~vi~~t-~~P~Wne~f~~~v~~~~-~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~ 165 (862)
....||++++++ .||+|||+|.|.+..+. ..|.|+|||+|.++ +++||++.||+..|..|. +|++|.+..|+
T Consensus 533 ~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~ 609 (624)
T 1djx_A 533 RDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGD 609 (624)
T ss_dssp GGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEECCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTTSC
T ss_pred CCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCCcC
Confidence 245799999997 99999999999998764 67899999999987 899999999999998774 69999998887
Q ss_pred CCCCCceEEEEeeee
Q 002960 166 PPKPGASIQLELKFT 180 (862)
Q Consensus 166 ~~~~~g~l~l~l~~~ 180 (862)
+. ..++|.|+++|.
T Consensus 610 ~~-~~~~L~v~i~~~ 623 (624)
T 1djx_A 610 QH-PSATLFVKISIQ 623 (624)
T ss_dssp EE-EEEEEEEEEEEE
T ss_pred CC-CceEEEEEEEEE
Confidence 64 478999999875
No 48
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.40 E-value=1.1e-12 Score=152.87 Aligned_cols=115 Identities=21% Similarity=0.377 Sum_probs=99.0
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEe
Q 002960 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (862)
Q Consensus 16 ~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~r 95 (862)
.|+|.|+|++|++|+.+|..+. +||||+|.+++.. .|
T Consensus 386 ~~~l~v~v~~a~~L~~~d~~~~------------------------------------------sdpyv~v~~~~~~-~~ 422 (510)
T 3jzy_A 386 IGRLMVHVIEATELKACKPNGK------------------------------------------SNPYCEISMGSQS-YT 422 (510)
T ss_dssp CEEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEETTEE-EE
T ss_pred CceEEEEeceeecCCCCCCCCC------------------------------------------CCeEEEEEECCee-cc
Confidence 4789999999999998887765 9999999998755 69
Q ss_pred eeeccCCCCCceeeEEEEeecCCC-ceEEEEEEecCCCC-CeeeEEEEEeceeeccCce----eEEEEEccCCCCCCCCC
Q 002960 96 TRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL----ISRWYDIIAPSGSPPKP 169 (862)
Q Consensus 96 T~vi~~t~~P~Wne~f~~~v~~~~-~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~----~~~w~~l~~~~~~~~~~ 169 (862)
|++++++.||+|||+|.|.+.... ..+.|+|||.|.++ +++||++.+++.++..+.. ...|+++.+. .
T Consensus 423 T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~------~ 496 (510)
T 3jzy_A 423 TRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV------P 496 (510)
T ss_dssp CCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS------S
T ss_pred CCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCCC------C
Confidence 999999999999999999997664 56899999999998 8999999999999886544 7889998432 4
Q ss_pred CceEEEEeee
Q 002960 170 GASIQLELKF 179 (862)
Q Consensus 170 ~g~l~l~l~~ 179 (862)
.|+|+|++.+
T Consensus 497 ~G~i~l~~~l 506 (510)
T 3jzy_A 497 TGEVWVRFDL 506 (510)
T ss_dssp SCEEEEEEEE
T ss_pred CceEEEEEEE
Confidence 6888887765
No 49
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=99.40 E-value=1.5e-12 Score=150.90 Aligned_cols=106 Identities=21% Similarity=0.318 Sum_probs=91.0
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEEEee
Q 002960 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (862)
Q Consensus 17 g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~~rT 96 (862)
|.|.|+|++|++|+. |.++. +||||+|.+++.+ .||
T Consensus 394 ~~L~V~V~~A~~L~~-D~~g~------------------------------------------sDPYV~v~l~~~~-~kT 429 (540)
T 3nsj_A 394 AHLVVSNFRAEHLWG-DYTTA------------------------------------------TDAYLKVFFGGQE-FRT 429 (540)
T ss_dssp EEEEEEEEEEESCCC-SSCSC------------------------------------------CCEEEEEEETTEE-EEC
T ss_pred cEEEEEEEEccCCCc-ccCCC------------------------------------------cCeEEEEEECCEe-eee
Confidence 799999999999998 87765 9999999999866 799
Q ss_pred eeccCCCCCceeeEEEEeecC--CCceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCCCCCCCCceE
Q 002960 97 RVLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASI 173 (862)
Q Consensus 97 ~vi~~t~~P~Wne~f~~~v~~--~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~l 173 (862)
+|+++++||+|||+|.|.+.. ....|.|+|||.|.++ +++||++.+++. .| ..+.|++| ..|.|
T Consensus 430 kvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD~LG~~~~~L~---~g-~~~~~~~l---------~~G~l 496 (540)
T 3nsj_A 430 GVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH---SG-FHEVTCEL---------NHGRV 496 (540)
T ss_dssp CCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCEEEEEEEECCC---SE-EEEEEEEC---------SSSEE
T ss_pred eeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCCEEEEEEEEee---CC-cEEEEEEc---------CCeEE
Confidence 999999999999999998643 5678999999999987 799999999987 24 36789986 25788
Q ss_pred EEEeee
Q 002960 174 QLELKF 179 (862)
Q Consensus 174 ~l~l~~ 179 (862)
++++..
T Consensus 497 ~~~~~~ 502 (540)
T 3nsj_A 497 KFSYHA 502 (540)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 877663
No 50
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.38 E-value=1.5e-12 Score=128.75 Aligned_cols=97 Identities=21% Similarity=0.322 Sum_probs=70.5
Q ss_pred CCcEEEEEECCeEEEeeeecc-CCCCCceeeEEEEeecCCCceEEEEEEecCCCC-CeeeEEEEEeceeeccCc------
Q 002960 80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE------ 151 (862)
Q Consensus 80 ~dpYv~v~l~~~~~~rT~vi~-~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~------ 151 (862)
+||||+|.. . . .||++++ ++.||+|||+|.|.+......|.|+|||+| ++ |++||++.||+.++....
T Consensus 32 ~DPYV~v~~-~-~-~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~L~~l~~~~~~g~~~ 107 (167)
T 2cjs_A 32 FNTYVTLKV-Q-N-VESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSNEEGPGE 107 (167)
T ss_dssp CEEEEEEEE-T-T-EEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCEEEEEEEEEGGGSCBCSSCCCCE
T ss_pred CCeEEEEEe-c-c-eEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCceEEEEEEEHHHhcccCcCCccc
Confidence 899999992 2 2 3777776 599999999999999988788999999999 55 999999999999886422
Q ss_pred eeEEEEEccCCCCCC----CCCCceEEEEeeee
Q 002960 152 LISRWYDIIAPSGSP----PKPGASIQLELKFT 180 (862)
Q Consensus 152 ~~~~w~~l~~~~~~~----~~~~g~l~l~l~~~ 180 (862)
-...|+.+..++|+. ....++|++.++|.
T Consensus 108 ~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e 140 (167)
T 2cjs_A 108 WLTLDSQAIMADSEICGTKDPTFHRILLDAHFE 140 (167)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEE
T ss_pred ceeeeeeeEcCCCCCCceEccccceEEEEEEee
Confidence 123455544333321 11244566777663
No 51
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=99.37 E-value=6.3e-14 Score=161.79 Aligned_cols=124 Identities=24% Similarity=0.423 Sum_probs=23.6
Q ss_pred eeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeEE
Q 002960 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (862)
Q Consensus 14 ~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~~~~ 93 (862)
-..|.|+|+|++|++|+.+ .||||++.+++...
T Consensus 8 r~~~~L~V~VieAk~L~~~-----------------------------------------------ddpYv~v~l~~~~~ 40 (483)
T 3bxj_A 8 RVDNVLKLWIIEARELPPK-----------------------------------------------KRYYCELCLDDMLY 40 (483)
T ss_dssp EEEECC--------------------------------------------------------------------------
T ss_pred eeccEEEEEEEEcCCcCCC-----------------------------------------------CCCeEEEEECCeEE
Confidence 3568999999999999853 37999999988777
Q ss_pred EeeeeccCC---CCCceeeEEEEeecCCCceEEEEEEec-C---CCC-CeeeEEEEEeceeeccCceeEEEEEccCCCC-
Q 002960 94 ARTRVLKNS---QEPVWNEHFNIPLAHPLSNLEIQVKDD-D---VFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG- 164 (862)
Q Consensus 94 ~rT~vi~~t---~~P~Wne~f~~~v~~~~~~l~~~v~d~-d---~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~- 164 (862)
+||++++++ .||+|||+|.|.+.+....+.|+|||. | .++ +++||++.||+.++..+...+.||+|.++.+
T Consensus 41 ~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~ 120 (483)
T 3bxj_A 41 ARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGS 120 (483)
T ss_dssp ------------------CCEECC------------------------------------------CCEECC--------
T ss_pred eeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCc
Confidence 899999999 999999999999766677899999994 4 244 8999999999999998888999999976543
Q ss_pred --------------------CCCCCCceEEEEeeeecCCC
Q 002960 165 --------------------SPPKPGASIQLELKFTPCDK 184 (862)
Q Consensus 165 --------------------~~~~~~g~l~l~l~~~~~~~ 184 (862)
+..+..|.|+|+++|.+...
T Consensus 121 ~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~v 160 (483)
T 3bxj_A 121 GGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSI 160 (483)
T ss_dssp ------------------------------CEEEEEECCB
T ss_pred cccccccccccccccccccccCCCCCceEEEEEEeeeeee
Confidence 11234689999999988543
No 52
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.32 E-value=7e-12 Score=134.66 Aligned_cols=104 Identities=26% Similarity=0.442 Sum_probs=87.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--Ce--
Q 002960 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QA-- 91 (862)
Q Consensus 16 ~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~--~~-- 91 (862)
.+.|.|+|++|++|+.+|..+. +||||+|.+. +.
T Consensus 149 ~~~l~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~~ 186 (284)
T 2r83_A 149 AGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKRL 186 (284)
T ss_dssp TTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEEETTEEE
T ss_pred CCceEEEEEEeECCCCcCCCCC------------------------------------------cCeEEEEEEEeCCcEe
Confidence 5789999999999999887665 8999999983 32
Q ss_pred EEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCCCC-CeeeEEEEEeceeec------------cCceeEE
Q 002960 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA------------TGELISR 155 (862)
Q Consensus 92 ~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~------------~g~~~~~ 155 (862)
...||++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||++.|++..+. .+..+.+
T Consensus 187 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~ 266 (284)
T 2r83_A 187 KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQ 266 (284)
T ss_dssp EEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEE
T ss_pred eeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchhe
Confidence 467999999999999999999998765 346899999999988 899999999997632 2456788
Q ss_pred EEEccC
Q 002960 156 WYDIIA 161 (862)
Q Consensus 156 w~~l~~ 161 (862)
|++|..
T Consensus 267 W~~L~~ 272 (284)
T 2r83_A 267 WHTLQV 272 (284)
T ss_dssp EEECBC
T ss_pred eeecCC
Confidence 999854
No 53
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=99.29 E-value=3.8e-12 Score=151.94 Aligned_cols=102 Identities=27% Similarity=0.472 Sum_probs=90.8
Q ss_pred ceEEEEEEEEeeCCCC---CCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--
Q 002960 16 HGDLDLKIIRARRLPN---MDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (862)
Q Consensus 16 ~g~L~v~I~~A~~L~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~-- 90 (862)
.|.|.|+|++|++|+. +|..+. +||||+|.+.+
T Consensus 17 ~g~L~V~Vi~A~nL~~~~~~D~~g~------------------------------------------sDPYV~V~l~~~~ 54 (749)
T 1cjy_A 17 SHKFTVVVLRATKVTKGAFGDMLDT------------------------------------------PDPYVELFISTTP 54 (749)
T ss_dssp CEEEEEEEEEEECCCSCHHHHHHCC------------------------------------------CCEEEEEECTTST
T ss_pred ccEEEEEEEEEECCCCccccCCCCC------------------------------------------cCeEEEEEEecCC
Confidence 4799999999999997 665443 89999999974
Q ss_pred eEEEeeeeccCCCCCceeeEEEEeecCC-CceEEEEEEecCCCCCeeeEEEEEeceeeccCceeEEEEEc
Q 002960 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDI 159 (862)
Q Consensus 91 ~~~~rT~vi~~t~~P~Wne~f~~~v~~~-~~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (862)
....||+|++++.||+|||+|.|.+... ...|.|+|||.|.+++++||++.|++.++..|...+.|++|
T Consensus 55 ~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L 124 (749)
T 1cjy_A 55 DSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIF 124 (749)
T ss_dssp TCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECCSSSCEEEEEECCBSTTSCTTCCCCEEEEE
T ss_pred CCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHcCCCCceEEEEec
Confidence 2456999999999999999999999874 56789999999998899999999999999988888999999
No 54
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.21 E-value=3.1e-12 Score=138.54 Aligned_cols=106 Identities=28% Similarity=0.440 Sum_probs=85.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--C--e
Q 002960 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q--A 91 (862)
Q Consensus 16 ~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~--~--~ 91 (862)
.|.|.|+|++|++|+.+|..+. +||||++.+. + .
T Consensus 151 ~~~l~v~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~l~~~~~~~ 188 (296)
T 1dqv_A 151 AGLLTVTIIKASNLKAMDLTGF------------------------------------------SDPYVKASLISEGRRL 188 (296)
T ss_dssp TTEEEEEEEEEESCCCCSSSSC------------------------------------------CCEEEEECCCTTCCTT
T ss_pred cceeEEEEEEeecCCccCCCCC------------------------------------------CCcEEEEEEEeCCcCc
Confidence 4889999999999999887665 8999999995 2 2
Q ss_pred EEEeeeeccCCCCCceeeEEEEeecCCC---ceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCCC
Q 002960 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (862)
Q Consensus 92 ~~~rT~vi~~t~~P~Wne~f~~~v~~~~---~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~ 164 (862)
.+.||++++++.||+|||+|.|.+.... ..|.|+|||.+.++ +++||.+.|++..+.. ...+.|++++...+
T Consensus 189 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~-~~~~~W~~~~~~~~ 264 (296)
T 1dqv_A 189 KKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLANPR 264 (296)
T ss_dssp SCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCH-HHHHHHHTSSSSSS
T ss_pred cceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCc-hhHHHHHHHHhCCC
Confidence 4569999999999999999999987653 46899999999998 8999999999986532 12345555544333
No 55
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.11 E-value=1.9e-10 Score=118.83 Aligned_cols=137 Identities=16% Similarity=0.053 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCcc
Q 002960 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (862)
Q Consensus 560 ~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Peg~~~~~~ 639 (862)
....+.++++|.+|+++|+|+..+|. . .+++.+|.+|.++| |+|+||+........
T Consensus 57 ~~~~~~ii~~I~~A~~sI~i~~Y~~~-~-----------------~~I~~aL~~Aa~RG--V~VRii~D~~~~~~~---- 112 (220)
T 4gel_A 57 LRNVAKIVEQIDRAVYSIDLAIYTFT-S-----------------LFLADSIKRALQRG--VIIRIISDGEMVYSK---- 112 (220)
T ss_dssp HHHHHHHHHHHHTCSSEEEEECSCBC-C-----------------HHHHHHHHHHHHHT--CEEEEECCTTTTTST----
T ss_pred HHHHHHHHHHHHHhhhEEEEEEEEeC-C-----------------HHHHHHHHHHHHcC--CeEEEEEechhhhhh----
Confidence 45567889999999999999974443 2 36778888887765 999999974321100
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEeeCC--CcCCCCcccccCCCCcccccccccceeeEEEeEEEE
Q 002960 640 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLG--KREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMI 717 (862)
Q Consensus 640 ~~~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~l~--~~e~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmI 717 (862)
.. ....+...++.+ .++... .|... .. ..+. ..........|.|++|
T Consensus 113 --------~~--------~~~~~~~~~~~~------~~~~~~~~~h~K~---~v-iD~~-----~~~~~~~~~~H~K~~v 161 (220)
T 4gel_A 113 --------GS--------QISMLAQLGVPV------RVPITTNLMHNKF---CI-IDGF-----ERVEEIRLLRKLKFMR 161 (220)
T ss_dssp --------TC--------HHHHHHHTTCCE------EECCSSSCBCCCE---EE-ESCH-----HHHHHHHHHTTCSCCC
T ss_pred --------HH--------HHHHHHhcCCcE------Eeeccccccccee---EE-Ecch-----hcccccccccceeccc
Confidence 00 123344555532 111000 00000 00 0000 0000011234777777
Q ss_pred EeeeEEEecCcCccccccCCCCCcceEEEeeCCccc
Q 002960 718 VDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (862)
Q Consensus 718 VDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 753 (862)
+|+.++++||+||+.+|+.+| .|..+++.++..+
T Consensus 162 ~D~~~v~~GS~N~t~~s~~~N--~E~~~vi~~~~~a 195 (220)
T 4gel_A 162 PCYSIVISGSVNWTALGLGGN--WENCIITADDKLT 195 (220)
T ss_dssp CCCCEEEEESCCBSHHHHHTS--BEEEEEECCHHHH
T ss_pred cccceEEecCccccccccccC--ceEEEEEECHHHH
Confidence 778999999999999999976 9999999887544
No 56
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.04 E-value=3.4e-10 Score=134.16 Aligned_cols=119 Identities=19% Similarity=0.215 Sum_probs=85.3
Q ss_pred HHHHHHHHhccc-----eEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCc
Q 002960 564 TAYIQAIRSAQH-----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (862)
Q Consensus 564 ~ay~~~I~~A~~-----~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Peg~~~~~ 638 (862)
++++++|++|++ +|+| ++||++.. ..++.+|++|+++| ++|+|+++..+. .+.
T Consensus 350 ~~v~~~I~~A~~dp~v~~I~i-t~Y~~~~d----------------~~I~~AL~~AA~rG--V~VrVLvd~~a~--~~~- 407 (687)
T 1xdp_A 350 EHVLELLRQASFDPSVLAIKI-NIYRVAKD----------------SRIIDSMIHAAHNG--KKVTVVVELQAR--FDE- 407 (687)
T ss_dssp HHHHHHHHHHHHCTTEEEEEE-EESSCCTT----------------CHHHHHHHHHHHTT--CEEEEEECTTCS--STT-
T ss_pred hhHHHHHHHHhhCCcceEEEE-EeeeecCc----------------HHHHHHHHHHHhcC--CEEEEEECCCcc--cch-
Confidence 578899999997 9999 89998421 25667777776655 999999997541 110
Q ss_pred chhhhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEeeCCCcCCCCcccccCCCCcccccccccceeeEEEeEEEEE
Q 002960 639 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 718 (862)
Q Consensus 639 ~~~~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIV 718 (862)
+... ...+.|.++|+++ .+| . ....+|+|+|||
T Consensus 408 -------~~n~-------~~~~~L~~aGV~V------~~~-~--------------------------~~~k~H~Ki~VI 440 (687)
T 1xdp_A 408 -------EANI-------HWAKRLTEAGVHV------IFS-A--------------------------PGLKIHAKLFLI 440 (687)
T ss_dssp -------TTTT-------TTTHHHHHHTCEE------EEC-C--------------------------TTCEECCEEEEE
T ss_pred -------hhHH-------HHHHHHHHCCCEE------EEe-c--------------------------CCccccceEEEE
Confidence 0011 1357788889864 112 1 023599999999
Q ss_pred ee----e---EEEecCcCccccccCCCCCcceEEEeeCCccc
Q 002960 719 DD----E---YVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (862)
Q Consensus 719 DD----~---~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 753 (862)
|+ + |++|||+|+|.||+.. ++|+++.+.+++.+
T Consensus 441 D~re~~~i~~~a~iGS~N~d~rs~~~--n~D~~l~i~~~~i~ 480 (687)
T 1xdp_A 441 SRKENGEVVRYAHIGTGNFNEKTARL--YTDYSLLTADARIT 480 (687)
T ss_dssp EEEETTEEEEEEEEESSCSCTTGGGT--EEEEEEEECCHHHH
T ss_pred EeccCCeEEEEEEEeCCcCCcchhhh--cceEEEEEeCHHHH
Confidence 95 4 4999999999999984 49999999887543
No 57
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=99.02 E-value=8.6e-10 Score=133.04 Aligned_cols=113 Identities=25% Similarity=0.420 Sum_probs=93.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 002960 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (862)
Q Consensus 16 ~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~----~ 91 (862)
.++|.|+|++|++|+.+ . +||||+|.+.+ .
T Consensus 649 ~~~L~V~Visaq~L~~~----~------------------------------------------~DPYV~V~l~g~p~d~ 682 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK----Q------------------------------------------ISSYVEVEMYGLPTDT 682 (816)
T ss_dssp CEEEEEEEEEEECCCSS----C------------------------------------------CCEEEEEEEESSGGGC
T ss_pred ceEEEEEEEEcccCCCC----C------------------------------------------CCCeEEEEEeCCCccc
Confidence 47899999999999842 1 89999999953 1
Q ss_pred --EEEeeeeccC-CCCCceeeE-EEEe-ecCC-CceEEEEEEecCCCCCeeeEEEEEeceeeccCceeEEEEEccCCCCC
Q 002960 92 --TVARTRVLKN-SQEPVWNEH-FNIP-LAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (862)
Q Consensus 92 --~~~rT~vi~~-t~~P~Wne~-f~~~-v~~~-~~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~ 165 (862)
...||+++++ +.||+|||+ |.|. +..+ ...|+|+|||++ +++||++.+||..|..|. ++++|.+..|+
T Consensus 683 ~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D~d---ddfiG~~~ipL~~L~~Gy---R~vpL~~~~g~ 756 (816)
T 3qr0_A 683 VRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN---GKFIGHRVMPLDGIKPGY---RHVPLRNESNR 756 (816)
T ss_dssp EEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEETT---SCEEEEEEEESTTCCCEE---EEEEEECTTSC
T ss_pred ccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEecC---CCeeeEEEEEHHHcCCcc---eEEEEeCCCCC
Confidence 4469999986 699999998 9998 7655 357899999985 799999999999999884 68999999888
Q ss_pred CCCCCceEEEEeeeec
Q 002960 166 PPKPGASIQLELKFTP 181 (862)
Q Consensus 166 ~~~~~g~l~l~l~~~~ 181 (862)
+. ..++|.+.+.+..
T Consensus 757 ~~-~~atLfv~i~~~~ 771 (816)
T 3qr0_A 757 PL-GLASVFAHIVAKD 771 (816)
T ss_dssp EE-EEEEEEEEEEEEE
T ss_pred CC-CceEEEEEEEEEe
Confidence 64 3578888887765
No 58
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=99.02 E-value=5.6e-10 Score=135.36 Aligned_cols=96 Identities=23% Similarity=0.400 Sum_probs=79.6
Q ss_pred CCcEEEEEECC-----eEEEeeeeccC-CCCCceee-EEEEe-ecCC-CceEEEEEEecCCCCCeeeEEEEEeceeeccC
Q 002960 80 SDPYVTVVVPQ-----ATVARTRVLKN-SQEPVWNE-HFNIP-LAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG 150 (862)
Q Consensus 80 ~dpYv~v~l~~-----~~~~rT~vi~~-t~~P~Wne-~f~~~-v~~~-~~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~g 150 (862)
+||||+|.+.+ ....||+|+++ +.||+||| +|.|. |..+ ...|.|+|||+| +++||++.|||..|..|
T Consensus 742 ~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~d---ddfiG~~~lpL~~L~~G 818 (885)
T 3ohm_B 742 VGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG---GKFVGHRILPVSAIRSG 818 (885)
T ss_dssp CCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEETT---TEEEEEEEEETTTCCCE
T ss_pred CCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcCC---ccEEeeEEEEHHHcCCC
Confidence 89999999943 23469999986 69999999 69998 6544 457899999987 89999999999999987
Q ss_pred ceeEEEEEccCCCCCCCCCCceEEEEeeeecC
Q 002960 151 ELISRWYDIIAPSGSPPKPGASIQLELKFTPC 182 (862)
Q Consensus 151 ~~~~~w~~l~~~~~~~~~~~g~l~l~l~~~~~ 182 (862)
. ++++|.+..|++. ..+.|.|.+.+...
T Consensus 819 y---R~vpL~~~~g~~l-~~atLfv~i~~~~~ 846 (885)
T 3ohm_B 819 Y---HYVCLRNEANQPL-CLPALLIYTEASDY 846 (885)
T ss_dssp E---EEEEEECTTSCEE-EEEEEEEEEEEEEC
T ss_pred c---eEEEecCCCCCcc-CceEEEEEEEEEec
Confidence 4 6899999888763 47899999988763
No 59
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=99.00 E-value=9.6e-10 Score=133.31 Aligned_cols=113 Identities=22% Similarity=0.384 Sum_probs=92.2
Q ss_pred eceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 002960 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (862)
Q Consensus 15 l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~~---- 90 (862)
..|+|.|+|++|++|+.. . +||||+|.+.+
T Consensus 676 ~~~~L~V~Visa~~L~~~----~------------------------------------------~DPYV~V~l~g~p~d 709 (799)
T 2zkm_X 676 VATTLSITVISGQFLSER----S------------------------------------------VRTYVEVELFGLPGD 709 (799)
T ss_dssp TCEEEEEEEEEEESCCSS----C------------------------------------------CCEEEEEEEECCTTS
T ss_pred eeeeEEEEEEeccccCcc----C------------------------------------------CCcEEEEEEEecCCC
Confidence 358999999999999841 1 89999999932
Q ss_pred -eEEEeee-eccC-CCCCceee-EEEE-eecCC-CceEEEEEEecCCCCCeeeEEEEEeceeeccCceeEEEEEccCCCC
Q 002960 91 -ATVARTR-VLKN-SQEPVWNE-HFNI-PLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (862)
Q Consensus 91 -~~~~rT~-vi~~-t~~P~Wne-~f~~-~v~~~-~~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~ 164 (862)
.+..||+ ++++ +.||+||| +|.| .+..+ ...|.|+|||++ +++||++.||+..|..|. +|++|.+..|
T Consensus 710 ~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D~d---~d~iG~~~ipl~~L~~G~---r~v~L~~~~g 783 (799)
T 2zkm_X 710 PKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSGY---HHLCLHSESN 783 (799)
T ss_dssp CCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT---TEEEEEEEEEGGGBCCEE---EEEEEECTTC
T ss_pred cccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEEEeC---CCccceEeeehhhcCCCc---EEEeccCCCC
Confidence 1246999 8875 69999999 7999 77655 357899999986 899999999999998774 7999998888
Q ss_pred CCCCCCceEEEEeeee
Q 002960 165 SPPKPGASIQLELKFT 180 (862)
Q Consensus 165 ~~~~~~g~l~l~l~~~ 180 (862)
++. ..+.|.|.+++.
T Consensus 784 ~~~-~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 784 MPL-TMPALFIFLEMK 798 (799)
T ss_dssp CEE-EEEEEEEEEEEE
T ss_pred CCC-CceEEEEEEEEE
Confidence 764 368888888774
No 60
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=98.98 E-value=8.6e-10 Score=132.76 Aligned_cols=107 Identities=22% Similarity=0.416 Sum_probs=91.4
Q ss_pred eeceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC----
Q 002960 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP---- 89 (862)
Q Consensus 14 ~l~g~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpYv~v~l~---- 89 (862)
+-.+.|.|+|.+|++|+.+|..+. +||||++.+.
T Consensus 169 ~~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------sDPyvkv~l~p~~~ 206 (674)
T 3pfq_A 169 IDREVLIVVVRDAKNLVPMDPNGL------------------------------------------SDPYVKLKLIPDPK 206 (674)
T ss_dssp ECSSEEEEEEEEEESCCCCSTTSS------------------------------------------CCEEEEEEEESCSS
T ss_pred eccceeeeeeecccccCCCCcccc------------------------------------------cCcccccccccCcc
Confidence 457889999999999999987765 9999999981
Q ss_pred CeEEEeeeeccCCCCCceeeEEEEeecCC--CceEEEEEEecCCCC-CeeeEEEEEeceeeccCceeEEEEEccCCC
Q 002960 90 QATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (862)
Q Consensus 90 ~~~~~rT~vi~~t~~P~Wne~f~~~v~~~--~~~l~~~v~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~ 163 (862)
.....||++++++.||+|||+|.|.+... ...+.|+|||.|.++ +++||.+.+++.++..+. .++|++++...
T Consensus 207 ~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~~ 282 (674)
T 3pfq_A 207 SESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQE 282 (674)
T ss_dssp CCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCC-EEEEEECBCTT
T ss_pred ccccccccccccccCCCccceeeeecccCCccceeeeEEeecccccccccccccccchhhhccCC-cccceeecccc
Confidence 23446999999999999999999998654 356999999999998 899999999999988654 58999997653
No 61
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Probab=98.96 E-value=9.8e-09 Score=93.81 Aligned_cols=89 Identities=16% Similarity=0.352 Sum_probs=75.4
Q ss_pred CCcEEEEEECCeEEE---ee-eeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCCCeeeEEEEEeceeec-----cC
Q 002960 80 SDPYVTVVVPQATVA---RT-RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA-----TG 150 (862)
Q Consensus 80 ~dpYv~v~l~~~~~~---rT-~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~~~~iG~~~i~l~~l~-----~g 150 (862)
.||||.|.++....+ +| ...+.|..|+|||+|.-.+.. ...|.|.|++... +++..+.+++++|. .+
T Consensus 27 lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~---~fvAn~tV~~edL~~~c~~~~ 102 (126)
T 1yrk_A 27 NQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAAE---EPVSEVTVGVSVLAERCKKNN 102 (126)
T ss_dssp CCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEETT---EEEEEEEEEHHHHHHHHHTTT
T ss_pred CCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence 899999999887665 87 566669999999999988764 4588999997655 99999999999988 34
Q ss_pred ceeEEEEEccCCCCCCCCCCceEEEEeeee
Q 002960 151 ELISRWYDIIAPSGSPPKPGASIQLELKFT 180 (862)
Q Consensus 151 ~~~~~w~~l~~~~~~~~~~~g~l~l~l~~~ 180 (862)
...+.|++| ++.|+|++.++|+
T Consensus 103 g~~e~WvdL--------eP~Gkl~~~i~~~ 124 (126)
T 1yrk_A 103 GKAEFWLDL--------QPQAKVLMSVQYF 124 (126)
T ss_dssp TEEEEEEEC--------BSSCEEEEEEEEE
T ss_pred CceEEEEec--------ccCcEEEEEEEEe
Confidence 567999999 4689999999986
No 62
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}
Probab=98.90 E-value=1.1e-08 Score=94.76 Aligned_cols=92 Identities=18% Similarity=0.379 Sum_probs=77.3
Q ss_pred CCcEEEEEECCeEE---Eee-eeccCCCCCceeeEEEEeecCCCceEEEEEEecCCCCCeeeEEEEEeceeec-----cC
Q 002960 80 SDPYVTVVVPQATV---ART-RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA-----TG 150 (862)
Q Consensus 80 ~dpYv~v~l~~~~~---~rT-~vi~~t~~P~Wne~f~~~v~~~~~~l~~~v~d~d~~~~~~iG~~~i~l~~l~-----~g 150 (862)
.||||.|.++.... ++| ...+.|..|+|||+|.-.+.. ...|.|.|++... +||..+.|++++|. .+
T Consensus 32 lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~---~fVAn~tV~~edL~~~ck~~~ 107 (138)
T 2enj_A 32 VNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKGKNV---DLISETTVELYSLAERCRKNN 107 (138)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEECSSC---SCCEEEEEESHHHHHHHHHTT
T ss_pred CCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence 89999999988766 888 666679999999999988754 4588999997554 89999999999998 34
Q ss_pred ceeEEEEEccCCCCCCCCCCceEEEEeeeecCC
Q 002960 151 ELISRWYDIIAPSGSPPKPGASIQLELKFTPCD 183 (862)
Q Consensus 151 ~~~~~w~~l~~~~~~~~~~~g~l~l~l~~~~~~ 183 (862)
...+.|++| ++.|+|++.++|+-..
T Consensus 108 g~~e~WvdL--------eP~Gkl~v~i~~~~e~ 132 (138)
T 2enj_A 108 GKTEIWLEL--------KPQGRMLMNARYFLEM 132 (138)
T ss_dssp TCEEEEEEC--------BSSCEEEEEEEECCCS
T ss_pred CceEEEEec--------ccCcEEEEEEEEEEec
Confidence 567999999 4689999999997543
No 63
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=98.71 E-value=3.9e-08 Score=112.20 Aligned_cols=147 Identities=17% Similarity=0.024 Sum_probs=99.4
Q ss_pred chHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeCCCCcccccccccC
Q 002960 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (862)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd~~~s~~~~~~~~~ 320 (862)
......+.++|.+|+++|+|+.-.|.|+ ..+.++|+.+++|||+|+||+ +...+...+.-...
T Consensus 257 ~~i~~~~~~lI~~A~~~I~I~tpYf~p~----------------~~~~~aL~~Aa~rGV~VrIi~-~~~~and~y~~~~~ 319 (458)
T 3hsi_A 257 NELNQVIEDLFLQVQKKLVICTPYFNFP----------------RTLQHKIATLLENGKRVEIIV-GDKVANDFYIPPEQ 319 (458)
T ss_dssp CHHHHHHHHHHHTCSSEEEEECSSSCCC----------------HHHHHHHHHHHTTTCEEEEEE-ECGGGSTTCCCTTS
T ss_pred hHHHHHHHHHHHhcccEEEEEEeccCCC----------------HHHHHHHHHHHHCCCeEEEEE-CCccccCCccCCcc
Confidence 4568899999999999999996555543 589999999999999999998 66532211100000
Q ss_pred Cc--ccCCcHHHH-----------hhhcCCC-ceEEecCCCCCCccccccccccccccccccceEEeccCCCCCCcceEE
Q 002960 321 GV--MATHDEETK-----------KFFKHSS-VNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITA 386 (862)
Q Consensus 321 ~~--~~~~~~~~~-----------~~l~~~~-v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~va 386 (862)
.+ .... .... ..+...| +.|.++.. ..+..|.|++|||++ ++
T Consensus 320 ~~~~~~~~-~~lye~~~~~f~~~~~~l~~~G~i~V~i~~~---------------~~~~lHaK~~vvD~~--------~~ 375 (458)
T 3hsi_A 320 PFKMAGAL-PYLYESNLRRFCEKFETQIESGQLVVRLWRD---------------GDNTYHLKGVWVDDR--------YI 375 (458)
T ss_dssp CCCGGGGH-HHHHHHHHHHHHHHTHHHHHHTSEEEEEECB---------------TTBEECCCEEEETTT--------EE
T ss_pred hhhhhcch-HHHHHHhhhhhHHHHHHHHhCCCeEEEEEec---------------CCCceeEEEEEECCe--------EE
Confidence 00 0000 0111 1233345 44443321 123589999999998 99
Q ss_pred EEccccccCcccCCCCcccccCCCcccCCCCCCCCCCCCCCCCCCCcceeeeEEeCH---HHHHHHHHHHHHHHhhc
Q 002960 387 FIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP---AAYDVLINFEQRWRKAT 460 (862)
Q Consensus 387 fvGG~dl~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gp---aa~dl~~~F~~rW~~~~ 460 (862)
+||+.|++..-+. --.++.+.|.+| .+.++.+.|.+.|..+.
T Consensus 376 ~vGS~N~d~RS~~--------------------------------lN~E~~~~i~~~~~~l~~~l~~~f~~~~~~s~ 420 (458)
T 3hsi_A 376 LLTGNNLNPRAWR--------------------------------LDAENGLLIYDPQQQLLAQVEKEQNQIRQHTK 420 (458)
T ss_dssp EEECCCCSHHHHH--------------------------------TCEEEEEEEECTTCSSHHHHHHHHHHHHTTEE
T ss_pred EecCCCCCcchhh--------------------------------hCceeEEEEeCCcHHHHHHHHHHHHHHHHhCe
Confidence 9999999883331 113788999998 79999999999997654
No 64
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=98.68 E-value=5.6e-08 Score=112.93 Aligned_cols=138 Identities=12% Similarity=0.159 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHhccceEEEeeccc-ccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCc
Q 002960 560 KSIQTAYIQAIRSAQHFIYIENQYF-LGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (862)
Q Consensus 560 ~sI~~ay~~~I~~A~~~IyIenqyF-~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Peg~~~~~ 638 (862)
.++..+++++|++||++|||+..+| .... ++..+..+|.++.++|++|+|+|++...+.+...
T Consensus 65 ~~~~~~l~~~I~~Ak~~I~i~~y~~~~~d~--------------~g~~i~~aL~~aa~rGp~V~Vril~D~~g~~~~~-- 128 (506)
T 1v0w_A 65 KRLLAKMTENIGNATRTVDISTLAPFPNGA--------------FQDAIVAGLKESAAKGNKLKVRILVGAAPVYHMN-- 128 (506)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEESSCCCHH--------------HHHHHHHHHHHHHHTTCCEEEEEEEECCC--CCC--
T ss_pred HHHHHHHHHHHHHhccEEEEEEeeccCCCh--------------HHHHHHHHHHHHHhCCCCcEEEEEEeCccccccc--
Confidence 5688999999999999999998663 3211 2457788888887777679999999854321110
Q ss_pred chhhhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEe--eCCCcCCCCcccccCCCCcccccccccceeeEEEeEEE
Q 002960 639 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFY--CLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGM 716 (862)
Q Consensus 639 ~~~~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y--~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlm 716 (862)
. ..+ .+.+.|.+.|+++.+ ++.+. .+.... .. ....|.|++
T Consensus 129 ~-------~~~-------~~~~~L~~~g~~~~~--~~~~~~~~~~~~~--------------------~~-~~r~H~K~~ 171 (506)
T 1v0w_A 129 V-------IPS-------KYRDELTAKLGKAAE--NITLNVASMTTSK--------------------TA-FSWNHSKIL 171 (506)
T ss_dssp C-------HHH-------HHHHHHHHHHGGGGG--GEEEEEEEECSBT--------------------TT-TBCBCCCEE
T ss_pred c-------CCH-------HHHHHHHhcccceee--cCccccccccccC--------------------Cc-cccceeeEE
Confidence 0 011 135667766654311 22222 111000 00 126799999
Q ss_pred EEeeeEEEecCcCc-cccccCCC-CCcceEEEeeCC
Q 002960 717 IVDDEYVIMGSANI-NQRSMAGS-KDTEIAMGSYQP 750 (862)
Q Consensus 717 IVDD~~~iIGSANl-n~RSm~g~-~DsEi~v~i~d~ 750 (862)
|||++++++||+|| +++.+..+ .=.++.+.++.|
T Consensus 172 ViD~~~a~~Gg~Nl~~d~y~~~~~~~~D~~v~i~G~ 207 (506)
T 1v0w_A 172 VVDGQSALTGGINSWKDDYLDTTHPVSDVDLALTGP 207 (506)
T ss_dssp EETTTEEEEESCCCCHHHHTSSSSCCBEEEEEEESH
T ss_pred EECCcEEEeeccccCccccccCCCCceEEEEEEECH
Confidence 99999999999998 66655311 116778888665
No 65
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=98.08 E-value=7.4e-06 Score=96.60 Aligned_cols=120 Identities=13% Similarity=0.194 Sum_probs=85.3
Q ss_pred HHHHHHHHHhccc-----eEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCC
Q 002960 563 QTAYIQAIRSAQH-----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKT 637 (862)
Q Consensus 563 ~~ay~~~I~~A~~-----~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~Peg~~~~ 637 (862)
.++++++|++|++ .|.++ .|.++.. ..++.+|++|+++| ++|+|++....-.+..
T Consensus 354 f~~vi~~I~~A~~DP~V~sIk~t-lYr~~~d----------------s~Iv~ALi~AA~rG--v~V~vLvel~arfdee- 413 (705)
T 2o8r_A 354 YDYVVRLLMEAAISPDVSEIRLT-QYRVAEN----------------SSIISALEAAAQSG--KKVSVFVELKARFDEE- 413 (705)
T ss_dssp SHHHHHHHHHHHTCTTEEEEEEE-ESCCCSC----------------CHHHHHHHHHHHTT--CEEEEEECCCSCC----
T ss_pred HHHHHHHHHHhccCCCceEEEEE-EEEEcCC----------------HHHHHHHHHHHHCC--CEEEEEEeCCCCcchh-
Confidence 4789999999999 99975 4554321 25778888887765 9999999842111100
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHHHHHcCcCCCCCCcEEEeeCCCcCCCCcccccCCCCcccccccccceeeEEEeEEEE
Q 002960 638 NTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMI 717 (862)
Q Consensus 638 ~~~~~~~~~~~~t~~~~~~~i~~~L~~~gv~~~p~~yl~~y~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmI 717 (862)
.+. ...+.|.++|+++ +|.+. ...+|+|++|
T Consensus 414 ~ni----------------~wa~~Le~aGv~V-------v~g~~--------------------------~lk~H~Ki~l 444 (705)
T 2o8r_A 414 NNL----------------RLSERMRRSGIRI-------VYSMP--------------------------GLKVHAKTAL 444 (705)
T ss_dssp -CH----------------HHHHHHHHHTCEE-------EECCT--------------------------TCCBCCCEEE
T ss_pred hhH----------------HHHHHHHHCCCEE-------EEccC--------------------------CCCceeEEEE
Confidence 011 1367889999865 34331 2357999999
Q ss_pred Eeee---------EEEecCcCccccccCCCCCcceEEEeeCCccc
Q 002960 718 VDDE---------YVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (862)
Q Consensus 718 VDD~---------~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 753 (862)
||++ |+.+|+.|+|+.+.... +++++.+.++..+
T Consensus 445 Idrr~~~~g~~~~y~~igtGN~n~~tariy--~D~~l~t~~~~i~ 487 (705)
T 2o8r_A 445 ILYHTPAGERPQGIALLSTGNFNETTARIY--SDTTLMTANTDIV 487 (705)
T ss_dssp EEECCCSSSCCCEEEEEESSCSSCCCSSCE--EEEEEEECCHHHH
T ss_pred EecccccCCceeEEEeccccceeeeEEEEE--eeeeeeecChHHH
Confidence 9988 78899999999999754 8899988777543
No 66
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=95.10 E-value=0.014 Score=63.84 Aligned_cols=52 Identities=8% Similarity=0.034 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecCC
Q 002960 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMW 630 (862)
Q Consensus 559 e~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~~ 630 (862)
...|.+...++|++|++.||+...+.. -..+...+.++.+ +||+|++++|..
T Consensus 117 ~~~I~~ri~eli~~A~~eI~i~~~~~~------------------l~~l~~~L~~a~~--RGV~Vrvi~~~~ 168 (342)
T 3qph_A 117 FDEAIEMFRESLYSAKNEVIVVTPSEF------------------FETIREDLIKTLE--RGVTVSLYIDKI 168 (342)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEECHHH------------------HHHHHHHHHHHHH--TTCEEEEEESSC
T ss_pred HHHHHHHHHHHHHhhheEEEEEeCHHH------------------HHHHHHHHHHHHh--CCCEEEEEECCC
Confidence 468999999999999999999864422 1233345555554 559999999753
No 67
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=94.29 E-value=0.061 Score=58.69 Aligned_cols=48 Identities=25% Similarity=0.182 Sum_probs=40.4
Q ss_pred chHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEE
Q 002960 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305 (862)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLv 305 (862)
+...+.+.+.|.+|+++|++..|. +. -..+.+.|.++++|||+|++++
T Consensus 118 ~~I~~ri~eli~~A~~eI~i~~~~---~~--------------l~~l~~~L~~a~~RGV~Vrvi~ 165 (342)
T 3qph_A 118 DEAIEMFRESLYSAKNEVIVVTPS---EF--------------FETIREDLIKTLERGVTVSLYI 165 (342)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEECH---HH--------------HHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHhhheEEEEEeCH---HH--------------HHHHHHHHHHHHhCCCEEEEEE
Confidence 567999999999999999998752 11 1467789999999999999998
No 68
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=94.14 E-value=0.052 Score=55.76 Aligned_cols=50 Identities=24% Similarity=0.110 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHhcccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEEeC
Q 002960 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD 307 (862)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLvwd 307 (862)
+...+.+.+.|++|+++|++..|. .. -.+|.+.|++|++|||.|+++++.
T Consensus 9 e~Ii~r~~e~I~~A~~el~lsi~~--e~---------------l~~l~~~L~~A~~rGV~V~liv~~ 58 (233)
T 2f5t_X 9 DEAIEMFRESLYSAKNEVIVVTPS--EF---------------FETIREDLIKTLERGVTVSLYIDK 58 (233)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEECG--GG---------------HHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHHHHHHHHhhhEEEEEeCH--HH---------------HHHHHHHHHHHHHCCCEEEEEEcC
Confidence 667899999999999999997652 11 258999999999999999999954
No 69
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=83.47 E-value=9.6 Score=38.28 Aligned_cols=40 Identities=13% Similarity=0.312 Sum_probs=32.8
Q ss_pred EEEeeeeccCCCCCceeeEEEEeecCC---CceEEEEEEecCC
Q 002960 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDV 131 (862)
Q Consensus 92 ~~~rT~vi~~t~~P~Wne~f~~~v~~~---~~~l~~~v~d~d~ 131 (862)
...+|-|...+.+|.|+|++.+.++.. ...|.|++++...
T Consensus 77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~ 119 (220)
T 3l4c_A 77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSS 119 (220)
T ss_dssp SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCC
T ss_pred eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecc
Confidence 346899999999999999999998865 4678999987543
No 70
>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=82.22 E-value=5.7 Score=37.73 Aligned_cols=98 Identities=12% Similarity=0.118 Sum_probs=70.5
Q ss_pred cEEEEEECCeEEEeeeeccCCCCCceeeEEEEeecCC--------CceEEEEEEecCCCCCeeeEEEEEeceeeccC-ce
Q 002960 82 PYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--------LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG-EL 152 (862)
Q Consensus 82 pYv~v~l~~~~~~rT~vi~~t~~P~Wne~f~~~v~~~--------~~~l~~~v~d~d~~~~~~iG~~~i~l~~l~~g-~~ 152 (862)
.||++.+-+-..+.|.+++ ..+|.+|-+-.+.+.-. ...+.+++.......-..||++.|++..+... +.
T Consensus 44 tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lELhqa~g~~~~tla~~~I~l~~lLe~~~~ 122 (156)
T 2yrb_A 44 TFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVHQAYSTEYETIAACQLKFHEILEKSGR 122 (156)
T ss_dssp EEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEEEECSSCEEEEEEEEECCSHHHHCCSC
T ss_pred EEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEEEEeeCCCceEEEEEEEEhHHhhCcCCc
Confidence 4666666555555777776 78999997777776543 24688888876433358999999999998743 34
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEeeeec
Q 002960 153 ISRWYDIIAPSGSPPKPGASIQLELKFTP 181 (862)
Q Consensus 153 ~~~w~~l~~~~~~~~~~~g~l~l~l~~~~ 181 (862)
+.+-.+|.+..|+. ..-|.|.+.+++..
T Consensus 123 i~g~~~L~g~~g~~-~~~G~LeywiRL~~ 150 (156)
T 2yrb_A 123 IFCTASLIGTKGDI-PNFGTVEYWFRLRV 150 (156)
T ss_dssp EEEEEEECBSSSCC-TTSEEEEEEEEEEE
T ss_pred eEEEEEEEcCCCCc-ceEEEEEEEEEEec
Confidence 77777888877642 35799998888743
No 71
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=81.30 E-value=1.6 Score=44.19 Aligned_cols=39 Identities=21% Similarity=0.145 Sum_probs=33.4
Q ss_pred EEEeEEEEE---eeeEEEecCcCccccccCCCCCcceEEEeeCC
Q 002960 710 YVHAKGMIV---DDEYVIMGSANINQRSMAGSKDTEIAMGSYQP 750 (862)
Q Consensus 710 yvHSKlmIV---DD~~~iIGSANln~RSm~g~~DsEi~v~i~d~ 750 (862)
.+|+|+-.. |...++|||.|+..-.|..| -|+++.++++
T Consensus 103 i~HaK~Yg~~~n~g~~LIV~SgNfT~pGmsQN--vE~sllld~~ 144 (358)
T 2c1l_A 103 ILHAKLYGTSNNLGESLVVSSGNFTGPGMSQN--IEASLLLDNN 144 (358)
T ss_dssp CBCCEEEEEEETTEEEEEEESCCBSTTTTTTS--BEEEEEECHH
T ss_pred ecchhhhcccCCCceEEEEecCCccccccccc--eeEEEEEcCC
Confidence 568898766 57889999999999999866 9999999765
No 72
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=64.95 E-value=27 Score=42.77 Aligned_cols=51 Identities=12% Similarity=0.222 Sum_probs=35.2
Q ss_pred CCcEEEEEE--CCeEE---EeeeeccCCCCCceeeEEEEeecC----CCceEEEEEEecC
Q 002960 80 SDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDD 130 (862)
Q Consensus 80 ~dpYv~v~l--~~~~~---~rT~vi~~t~~P~Wne~f~~~v~~----~~~~l~~~v~d~d 130 (862)
.+.||++.+ ++..+ ..|..+.-..+|.|||.+.|++.- ....|.|+||+..
T Consensus 235 ~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~ 294 (940)
T 2wxf_A 235 MKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAVV 294 (940)
T ss_dssp CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEEC
T ss_pred ceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEec
Confidence 577888876 54322 245555557789999999988542 2567899999853
No 73
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=56.51 E-value=38 Score=41.95 Aligned_cols=66 Identities=15% Similarity=0.147 Sum_probs=42.1
Q ss_pred CCcEEEEEE--CCeE---EEeeeeccCCCCCceeeEEEEeecC----CCceEEEEEEecCCCC-----CeeeEEEEEece
Q 002960 80 SDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-----AQIIGTAAIPAH 145 (862)
Q Consensus 80 ~dpYv~v~l--~~~~---~~rT~vi~~t~~P~Wne~f~~~v~~----~~~~l~~~v~d~d~~~-----~~~iG~~~i~l~ 145 (862)
.+.||++.+ ++.. ..+|+.+. ..+|.|||...|++.- ..+.+.|+||+..... ...||.+.+++-
T Consensus 375 ~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~~~~~~~~~~~~~~lg~~n~~lf 453 (1091)
T 3hhm_A 375 DKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICSVKGRKGAKEEHCPLAWGNINLF 453 (1091)
T ss_dssp CCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECCCCCCC-------CCEEEEEESB
T ss_pred ceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEEecCccCcccccceeEEeeeeeE
Confidence 577888887 4432 22444333 4678899999998542 2567899999855421 246777777765
Q ss_pred e
Q 002960 146 T 146 (862)
Q Consensus 146 ~ 146 (862)
+
T Consensus 454 d 454 (1091)
T 3hhm_A 454 D 454 (1091)
T ss_dssp C
T ss_pred c
Confidence 4
No 74
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=50.66 E-value=56 Score=40.09 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=34.1
Q ss_pred CCcEEEEEE--CCeEEE--eeeeccCCCCCceeeEEEEeecC----CCceEEEEEEec
Q 002960 80 SDPYVTVVV--PQATVA--RTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDD 129 (862)
Q Consensus 80 ~dpYv~v~l--~~~~~~--rT~vi~~t~~P~Wne~f~~~v~~----~~~~l~~~v~d~ 129 (862)
++.||++.+ ++.... +|.-+.-+.+|.|||.+.|++.- ..+.+.|+||+.
T Consensus 238 ~~~~V~~~l~~G~~~l~~~~t~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~ 295 (961)
T 1e7u_A 238 LTVFVEANIQYGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCG 295 (961)
T ss_dssp EEEEEEEEEEETTEEEEEEECCCEECCSEEEEEEEEEEEEEGGGCCTTCEEEEEEEEE
T ss_pred ceEEEEEEEEECCEEcccceeeccccCCCcccceeEEeccccccCCcccEEEEEEEec
Confidence 577888766 554433 34444446789999998887542 256789999974
No 75
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=49.68 E-value=34 Score=34.62 Aligned_cols=51 Identities=8% Similarity=0.070 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHhccceEEEeecccccccCCCCccccCCcCCccHHHHHHHHHHHHHcCCCeEEEEEecC
Q 002960 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPM 629 (862)
Q Consensus 559 e~sI~~ay~~~I~~A~~~IyIenqyF~~~~~~wp~~~~~~~~n~i~~~l~~~i~~~~~~~~~v~V~Ivlp~ 629 (862)
...|.+-..++|++|++.|+++- |++. -..+...|.+|.++ ||.|+|++..
T Consensus 8 ~e~Ii~r~~e~I~~A~~el~lsi---------~~e~---------l~~l~~~L~~A~~r--GV~V~liv~~ 58 (233)
T 2f5t_X 8 FDEAIEMFRESLYSAKNEVIVVT---------PSEF---------FETIREDLIKTLER--GVTVSLYIDK 58 (233)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEEE---------CGGG---------HHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred HHHHHHHHHHHHHHhhhEEEEEe---------CHHH---------HHHHHHHHHHHHHC--CCEEEEEEcC
Confidence 36788889999999999999942 2322 23566677777654 4999999874
No 76
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=34.46 E-value=15 Score=41.98 Aligned_cols=42 Identities=24% Similarity=0.222 Sum_probs=30.0
Q ss_pred ceeeEEEeEEEEE---------e---e----eEEEecCcCccccccCC----CCCcceEEEe
Q 002960 706 RFMIYVHAKGMIV---------D---D----EYVIMGSANINQRSMAG----SKDTEIAMGS 747 (862)
Q Consensus 706 ~~~iyvHSKlmIV---------D---D----~~~iIGSANln~RSm~g----~~DsEi~v~i 747 (862)
+....-|.|++|- | | .|+++|||||..-.+.- -+..|++|++
T Consensus 426 R~~a~PHiKty~r~~~~~~~~~~~~~~~~~i~W~lltSaNLSkaAWG~~~k~irnyElGVL~ 487 (544)
T 1q32_A 426 RGTTPAHSKFYMHCATNSAGPCDASQVFKELEWCLYTSANLSQTAWGTVSRKPRNYEAGVLY 487 (544)
T ss_dssp TTTCCBCCEEEEEEEECC-------CTTSEESEEEEESCCBSHHHHCCSSSCCSSBEEEEEE
T ss_pred CCCccCceEEEEeeccccccccccCCCccceeEEEEccccCCHHHhhhhhccccceEeEEEe
Confidence 3456779998873 2 1 48999999998755532 1459999999
No 77
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=32.04 E-value=63 Score=28.06 Aligned_cols=67 Identities=12% Similarity=0.127 Sum_probs=38.4
Q ss_pred CCCCcchHHHHHHHHHHhccc-c-eEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHcCCEEEEEE
Q 002960 236 KLYKPGTCWEDICHAISEAHH-L-IYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305 (862)
Q Consensus 236 ~~y~~~~~f~~l~~aI~~Ak~-~-I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~rGV~VriLv 305 (862)
.+|.++.++.++.-|...++. . +.+.-+.+.+.+++.+....+.. ...+.+.|+...+.||+|++..
T Consensus 11 ~p~~~~~~~~al~~a~~~~~~~g~~~v~vff~~dgV~~~~~~~~~~~---~~~~~~~l~~l~~~gv~v~~C~ 79 (117)
T 1jx7_A 11 APYGSESLFNSLRLAIALREQESNLDLRLFLMSDAVTAGLRGQKPGE---GYNIQQMLEILTAQNVPVKLCK 79 (117)
T ss_dssp CTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECGGGGGGGBSCCCCSS---SCCHHHHHHHHHHTTCCEEEEH
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCCccEEEEEEchHHHHHhcCCCCCc---CCCHHHHHHHHHHCCCEEEEeH
Confidence 345556666655544443322 1 13333444666666654322211 2568889998888999998875
No 78
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=31.50 E-value=41 Score=41.79 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=33.3
Q ss_pred CCcEEEEEE--CCeEE---EeeeeccCCCCCceeeEEEEeecCC----CceEEEEEEecC
Q 002960 80 SDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDD 130 (862)
Q Consensus 80 ~dpYv~v~l--~~~~~---~rT~vi~~t~~P~Wne~f~~~v~~~----~~~l~~~v~d~d 130 (862)
.+.||++.+ ++..+ ..|..+.-+.+|.|||.+.|++.-. .+.+.|+||+..
T Consensus 371 ~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~~~ 430 (1092)
T 2y3a_A 371 VKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVYAVL 430 (1092)
T ss_dssp CCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECCCC-
T ss_pred ceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEEEec
Confidence 566776554 54332 2455444477899999988885432 467899999853
No 79
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=26.32 E-value=1.1e+02 Score=28.28 Aligned_cols=73 Identities=12% Similarity=0.039 Sum_probs=45.3
Q ss_pred ecCCCCCCCcchHHHHHHHHHHhcccceEE-EEEEeeceeEEeecCCCCCCCCCcchHHHHHHHH-HHcCCEEEEEE
Q 002960 231 PLDGGKLYKPGTCWEDICHAISEAHHLIYI-VGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYK-SEEGVRVLLLV 305 (862)
Q Consensus 231 ~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I-~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~k-A~rGV~VriLv 305 (862)
.+.++.+|-++.+++++.-|...+...-.| .-|.+.+.+++......|... ...+.+.++.. ...||++++-.
T Consensus 17 ivv~~~Pyg~~~a~~Al~~A~aala~g~eV~~VFf~~DGV~~a~~~q~p~~~--~~~l~~~~~~La~~~gv~l~vC~ 91 (140)
T 2d1p_A 17 IVVTGPAYGTQQASSAFQFAQALIADGHELSSVFFYREGVYNANQLTSPASD--EFDLVRAWQQLNAQHGVALNICV 91 (140)
T ss_dssp EEECSCSSSSSHHHHHHHHHHHHHHTTCEEEEEEECGGGGGGGBTTCCCCTT--SCCHHHHHHHHHHHHCCEEEEEH
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHHHCCCccCEEEEechHHHHHhcCCCCccc--cCChHHHHHHHHHHcCCEEEEeH
Confidence 345566787788888776666544444455 555566777665433222222 24577788888 46799987765
No 80
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=24.63 E-value=89 Score=28.09 Aligned_cols=69 Identities=13% Similarity=0.069 Sum_probs=38.5
Q ss_pred CCCCCCcchHHHHHHHHHHhc--ccceEEEEEEeeceeEEeecCCCCCCCCCcchHHHHHHHHHHc-CCEEEEEE
Q 002960 234 GGKLYKPGTCWEDICHAISEA--HHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEE-GVRVLLLV 305 (862)
Q Consensus 234 ~g~~y~~~~~f~~l~~aI~~A--k~~I~I~~w~~~~~~~L~R~~~~~~~~g~~~~l~~lL~~kA~r-GV~VriLv 305 (862)
.+.+|.+..++.++.=|...+ .++|. .-|.+.+.+++......|... ...+.+.|+..+++ ||+|++..
T Consensus 8 ~~~p~~~~~~~~al~~a~a~~~~g~~v~-~vff~~dGV~~~~~~~~p~~~--~~~l~~~~~~L~~~~gv~l~vC~ 79 (130)
T 2hy5_A 8 NEGPYQHQASDSAYQFAKAALEKGHEIF-RVFFYHDGVNNSTRLTTPPQD--DRHIVNRWAELAEQYELDMVVCV 79 (130)
T ss_dssp CSCTTTSTHHHHHHHHHHHHHHTTCEEE-EEEECGGGGGGGBSCCCCCTT--SCCHHHHHHHHHHHHTCCEEEEH
T ss_pred eCCCCCcHHHHHHHHHHHHHHhcCCeeC-EEEEechHHHHHhcCCCCCcc--cCCHHHHHHHHHHHcCCeEEEeH
Confidence 444565566666655444433 44440 334445666655432222111 24677888888777 99988875
Done!