BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002961
(862 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 282 bits (722), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 169/400 (42%), Positives = 241/400 (60%), Gaps = 32/400 (8%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
KTLLA+AVAGEA V FF IS S FVE++VGVGA+RVR L+ +AK +AP +VFIDE+DAVG
Sbjct: 62 KTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVG 121
Query: 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKI 561
R RG G G ER+ TLNQLLV +DGF+ + +I +A+TNRPDILDPAL+RPGRFD+KI
Sbjct: 122 RHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKI 181
Query: 562 FIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGR 621
+ P ++GR +IL++H R KP+A+DV+ +A T G VGA+L N+V AA+ R+GR
Sbjct: 182 VVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGR 241
Query: 622 TEITTDDLLQA-----AQIEERGMLDRKERSSETWRQVAINEAAMAVVAVNFPDLKNIEF 676
+IT D +A A + +L S R +A +EA AVV+ P+ + +
Sbjct: 242 DKITMKDFEEAIDRVIAGPARKSLL----ISPAEKRIIAYHEAGHAVVSTVVPNGEPVHR 297
Query: 677 VTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIW 736
++I PR + LGY + K+ ++SR LLD +T L RAA+E+ G+ +++
Sbjct: 298 ISIIPRGYKALGYTLHLPEEDKY---LVSRNELLDKLTALLGGRAAEEVVFGD--VTSGA 352
Query: 737 AETADNARSAARTFV--------LGGLS----------DKHFGLSNFWVADRINEIDTEA 778
A + A AR V LG L+ K + + ++ID E
Sbjct: 353 ANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEV 412
Query: 779 LRILNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEF 818
+I+ CYERAKEI+++ R LD +V L+EK+++ E
Sbjct: 413 KKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDEL 452
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 281 bits (718), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 168/399 (42%), Positives = 240/399 (60%), Gaps = 32/399 (8%)
Query: 443 TLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGR 502
TLLA+AVAGEA V FF IS S FVE++VGVGA+RVR L+ +AK +AP +VFIDE+DAVGR
Sbjct: 63 TLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGR 122
Query: 503 ERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIF 562
RG G G ER+ TLNQLLV +DGF+ + +I +A+TNRPDILDPAL+RPGRFD+KI
Sbjct: 123 HRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIV 182
Query: 563 IPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRT 622
+ P ++GR +IL++H R KP+A+DV+ +A T G VGA+L N+V AA+ R+GR
Sbjct: 183 VDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRD 242
Query: 623 EITTDDLLQA-----AQIEERGMLDRKERSSETWRQVAINEAAMAVVAVNFPDLKNIEFV 677
+IT D +A A + +L S R +A +EA AVV+ P+ + + +
Sbjct: 243 KITMKDFEEAIDRVIAGPARKSLL----ISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRI 298
Query: 678 TIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWA 737
+I PR + LGY + K+ ++SR LLD +T L RAA+E+ G+ +++ A
Sbjct: 299 SIIPRGYKALGYTLHLPEEDKY---LVSRNELLDKLTALLGGRAAEEVVFGD--VTSGAA 353
Query: 738 ETADNARSAARTFV--------LGGLS----------DKHFGLSNFWVADRINEIDTEAL 779
+ A AR V LG L+ K + + ++ID E
Sbjct: 354 NDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVK 413
Query: 780 RILNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEF 818
+I+ CYERAKEI+++ R LD +V L+EK+++ E
Sbjct: 414 KIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDEL 452
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 256 bits (655), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 172/402 (42%), Positives = 234/402 (58%), Gaps = 31/402 (7%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
KT LA+AVAGEA V F + S S FVE++VGVGA+RVR L++ AK +AP +VFIDE+DAVG
Sbjct: 77 KTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 136
Query: 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKI 561
R+RG G G ER+ TLNQLLV +DGFE ++ +A+TNRPDILDPAL+RPGRFDR+I
Sbjct: 137 RKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQI 196
Query: 562 FIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGR 621
I P + GR +IL++HAR KP+A+DVD +A T G VGA+L N++ AA+ R+GR
Sbjct: 197 AIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR 256
Query: 622 TEITTDDLLQAAQIEERGMLDRKER---SSETWRQVAINEAAMAVVAVNFPDLKNIEFVT 678
+IT DL +AA + ML K+ S R A +EA A+ A + VT
Sbjct: 257 RKITMKDLEEAA--DRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVT 314
Query: 679 IAPRAGRELGYVRMKMDHMKFKEGML--SRQSLLDHITVQLAPRAADELWCGEGQLSTIW 736
I PR GR LG++ M +E ML SR+ LLD I V LA RAA+E+ + ++T
Sbjct: 315 IVPR-GRALGFM------MPRREDMLHWSRKRLLDQIAVALAGRAAEEIVFDD--VTTGA 365
Query: 737 AETADNARSAARTFVLGGLSDKHFGLSNFWV---------------ADRINEIDTEALRI 781
A AR + FG + V + ID R+
Sbjct: 366 ENDFRQATELARRMITEWGMHPEFGPVAYAVREDTYLGGYDVRQYSEETAKRIDEAVRRL 425
Query: 782 LNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEFFHLVE 823
+ Y+R K +L R +L+ V L+E+++LT +EF +VE
Sbjct: 426 IEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVE 467
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 256 bits (654), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 172/402 (42%), Positives = 234/402 (58%), Gaps = 31/402 (7%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
KT LA+AVAGEA V F + S S FVE++VGVGA+RVR L++ AK +AP +VFIDE+DAVG
Sbjct: 86 KTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 145
Query: 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKI 561
R+RG G G ER+ TLNQLLV +DGFE ++ +A+TNRPDILDPAL+RPGRFDR+I
Sbjct: 146 RKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQI 205
Query: 562 FIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGR 621
I P + GR +IL++HAR KP+A+DVD +A T G VGA+L N++ AA+ R+GR
Sbjct: 206 AIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR 265
Query: 622 TEITTDDLLQAAQIEERGMLDRKER---SSETWRQVAINEAAMAVVAVNFPDLKNIEFVT 678
+IT DL +AA + ML K+ S R A +EA A+ A + VT
Sbjct: 266 RKITMKDLEEAA--DRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVT 323
Query: 679 IAPRAGRELGYVRMKMDHMKFKEGML--SRQSLLDHITVQLAPRAADELWCGEGQLSTIW 736
I PR GR LG++ M +E ML SR+ LLD I V LA RAA+E+ + ++T
Sbjct: 324 IVPR-GRALGFM------MPRREDMLHWSRKRLLDQIAVALAGRAAEEIVFDD--VTTGA 374
Query: 737 AETADNARSAARTFVLGGLSDKHFGLSNFWV---------------ADRINEIDTEALRI 781
A AR + FG + V + ID R+
Sbjct: 375 ENDFRQATELARRMITEWGMHPEFGPVAYAVREDTYLGGYDVRQYSEETAKRIDEAVRRL 434
Query: 782 LNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEFFHLVE 823
+ Y+R K +L R +L+ V L+E+++LT +EF +VE
Sbjct: 435 IEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVE 476
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 213 bits (542), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 104/177 (58%), Positives = 135/177 (76%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
KTLLAKA+AGEA V FF+IS S FVE++VGVGASRVR ++++AK AP ++FIDE+DAVG
Sbjct: 58 KTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVG 117
Query: 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKI 561
R+RG G G ER+ TLNQ+LV +DGFEG +I IA+TNRPD+LDPAL+RPGRFDR++
Sbjct: 118 RQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQV 177
Query: 562 FIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMR 618
+ P + GR +ILKVH R+ P+A D+D +A T G GA+LAN+V AA+ R
Sbjct: 178 VVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAAR 234
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 208 bits (530), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 111/193 (57%), Positives = 144/193 (74%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
KT LA+AVAGEA V F + S S FVE++VGVGA+RVR L++ AK +AP +VFIDE+DAVG
Sbjct: 86 KTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 145
Query: 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKI 561
R+RG G G ER+ TLNQLLV +DGFE ++ +A+TNRPDILDPAL+RPGRFDR+I
Sbjct: 146 RKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQI 205
Query: 562 FIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGR 621
I P + GR +IL++HAR KP+A+DVD +A T G VGA+L N++ AA+ R+GR
Sbjct: 206 AIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR 265
Query: 622 TEITTDDLLQAAQ 634
+IT DL +AA
Sbjct: 266 RKITMKDLEEAAS 278
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/192 (57%), Positives = 144/192 (75%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
KT LA+AVAGEA V F + S S FVE++VGVGA+RVR L++ AK +AP +VFIDE+DAVG
Sbjct: 62 KTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 121
Query: 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKI 561
R+RG G G ER+ TLNQLLV +DGFE ++ +A+TNRPDILDPAL+RPGRFDR+I
Sbjct: 122 RKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQI 181
Query: 562 FIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGR 621
I P + GR +IL++HAR KP+A+DVD +A T G VGA+L N++ AA+ R+GR
Sbjct: 182 AIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR 241
Query: 622 TEITTDDLLQAA 633
+IT DL +AA
Sbjct: 242 RKITMKDLEEAA 253
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/231 (48%), Positives = 154/231 (66%), Gaps = 11/231 (4%)
Query: 415 VKFSDMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGA 474
+K+ + Y G + KTLLAKAVAGEA V FFS+ S F+E++VG+GA
Sbjct: 30 LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGA 89
Query: 475 SRVRSLYQEAKDNAPSVVFIDELDAVGRER---GLIKGSGGQERDATLNQLLVCLDGFEG 531
SRVR L++ AK APS++FIDE+DA+G+ R G++ SG ER+ TLNQLL +DGF G
Sbjct: 90 SRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVV--SGNDEREQTLNQLLAEMDGF-G 146
Query: 532 RGN--VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVD 589
N VI +A+TNRP+ILDPAL+RPGRFDR++ + KP GR+EILKVH + +A+DV+
Sbjct: 147 SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVN 206
Query: 590 YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGM 640
VA +T G+ GA+LANI+ AA+ R+ + E+ L +A ERG+
Sbjct: 207 LQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAV---ERGI 254
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 186 bits (472), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 138/220 (62%)
Query: 415 VKFSDMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGA 474
+K +++ + G+ KTLLAKAVA E F + S+ V+ ++G GA
Sbjct: 37 LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGA 96
Query: 475 SRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGN 534
S V+ +++ AK+ APS++FIDE+DA+ +R G +E TL QLL +DGF+ RG+
Sbjct: 97 SLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGD 156
Query: 535 VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVA 594
V I +TNRPDILDPA++RPGRFDR I +P P GR+EILK+H RK +A+DV+ +A
Sbjct: 157 VKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIA 216
Query: 595 SMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634
MT+G VGAEL I A +N +R+ R +T DD +A +
Sbjct: 217 KMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVE 256
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/188 (47%), Positives = 125/188 (66%), Gaps = 3/188 (1%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
KTLLAKAVA EA V F +++ ++FVE+ G+GA+RVRSL++EA+ AP +V+IDE+DAVG
Sbjct: 52 KTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVG 111
Query: 502 RERG-LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRK 560
++R + G E + TLNQLLV +DG +VI +ASTNR DILD AL+RPGR DR
Sbjct: 112 KKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRH 171
Query: 561 IFIPKPGLIGRMEILKVHARKKPMADDVDYLA--VASMTDGMVGAELANIVEVAAINMMR 618
+FI P L R EI + H + + + + +A +T G GA++ANI AA++ R
Sbjct: 172 VFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAR 231
Query: 619 DGRTEITT 626
+G T + T
Sbjct: 232 EGHTSVHT 239
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 162 bits (411), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 124/220 (56%)
Query: 415 VKFSDMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGA 474
+K ++++R G++ KTLLAKAVA G NF AS V+ Y+G A
Sbjct: 201 LKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESA 260
Query: 475 SRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGN 534
+R ++ AK++ P ++F+DE+DA+G R S +E TL +LL +DGF+ G
Sbjct: 261 RIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ 320
Query: 535 VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVA 594
I +TNRPD LDPAL+RPGR DRK+ IP P GR+EI K+H K + D+ A
Sbjct: 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAV 380
Query: 595 SMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634
M+DG GA++ N A +RD R I DDL++A +
Sbjct: 381 KMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVR 420
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 135/234 (57%), Gaps = 5/234 (2%)
Query: 404 GLPQYLERGVD-----VKFSDMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVAGEAGVNFF 458
GL + +E V+ +K +D ++ G+R KTLLA+A A + F
Sbjct: 185 GLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFL 244
Query: 459 SISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDAT 518
++A Q V++Y+G GA VR + AK+ AP+++FIDELDA+G +R + SG +E T
Sbjct: 245 KLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRT 304
Query: 519 LNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH 578
+ +LL LDGF V +A+TNR D+LDPAL+R GR DRKI P P R +IL++H
Sbjct: 305 MLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIH 364
Query: 579 ARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA 632
+RK DD+++ +A TD GA+L + A + +R+G++ + +D ++
Sbjct: 365 SRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEG 418
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 120/190 (63%), Gaps = 4/190 (2%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
KTLLA+AVA F +S ++ V+ Y+G G+ VR L+ A+++APS++F+DE+D++G
Sbjct: 195 KTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIG 254
Query: 502 RERGLIKGSGGQERDA--TLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDR 559
R ++GSGG + + T+ +LL LDGFE N+ I +TNR DILDPAL+RPGR DR
Sbjct: 255 STR--VEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDR 312
Query: 560 KIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 619
KI P P + R EIL++H+RK + ++ VA +G GA++ + A + +R+
Sbjct: 313 KIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372
Query: 620 GRTEITTDDL 629
R +T +D
Sbjct: 373 RRIHVTQEDF 382
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 132/231 (57%), Gaps = 3/231 (1%)
Query: 419 DMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVR 478
++Y G++ KTLLAKAVA + F I S+ ++ Y+G G R
Sbjct: 206 ELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCR 265
Query: 479 SLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI 538
+++ A +NAPS+VFIDE+DA+G +R G +E T+ +LL LDGF+ RG+V I
Sbjct: 266 QIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVI 325
Query: 539 ASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTD 598
+TN+ + LDPAL+RPGR DRKI P L + +IL +H K +++DV+ + + D
Sbjct: 326 MATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKD 385
Query: 599 GMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSSE 649
+ GA++ + A + +R+ R ++T +D QA +ER M ++ E + E
Sbjct: 386 DLSGADIQAMCTEAGLLALRERRMQVTAEDFKQA---KERVMKNKVEENLE 433
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 108/172 (62%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
KTLLAKA+A E NF SI + + ++ G + VR ++ +A+ AP V+F DELD++
Sbjct: 62 KTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIA 121
Query: 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKI 561
+ RG G GG D +NQ+L +DG + NV I +TNRPDI+DPA++RPGR D+ I
Sbjct: 122 KARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLI 181
Query: 562 FIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAA 613
+IP P R+ ILK + RK P+A DVD +A MT+G GA+L I + A
Sbjct: 182 YIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 233
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 115/177 (64%), Gaps = 3/177 (1%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
KTL+A+AVA E G FF I+ + + G S +R ++EA+ NAP+++FIDELDA+
Sbjct: 251 KTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIA 310
Query: 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKI 561
+R K G ER ++QLL +DG + R +VI +A+TNRP+ +DPAL R GRFDR++
Sbjct: 311 PKRE--KTHGEVER-RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREV 367
Query: 562 FIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMR 618
I P GR+EIL++H + +ADDVD VA+ T G VGA+LA + AA+ +R
Sbjct: 368 DIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 108/172 (62%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
KTLLAKA+A E NF SI + + ++ G + VR ++ +A+ AP V+F DELD++
Sbjct: 524 KTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIA 583
Query: 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKI 561
+ RG G GG D +NQ+L +DG + NV I +TNRPDI+DPA++RPGR D+ I
Sbjct: 584 KARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643
Query: 562 FIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAA 613
+IP P R+ ILK + RK P+A DVD +A MT+G GA+L I + A
Sbjct: 644 YIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 695
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 115/177 (64%), Gaps = 3/177 (1%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
KTL+A+AVA E G FF I+ + + G S +R ++EA+ NAP+++FIDELDA+
Sbjct: 251 KTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIA 310
Query: 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKI 561
+R K G ER ++QLL +DG + R +VI +A+TNRP+ +DPAL R GRFDR++
Sbjct: 311 PKRE--KTHGEVER-RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREV 367
Query: 562 FIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMR 618
I P GR+EIL++H + +ADDVD VA+ T G VGA+LA + AA+ +R
Sbjct: 368 DIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 108/172 (62%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
KTLLAKA+A E NF SI + + ++ G + VR ++ +A+ AP V+F DELD++
Sbjct: 524 KTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIA 583
Query: 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKI 561
+ RG G GG D +NQ+L +DG + NV I +TNRPDI+DPA++RPGR D+ I
Sbjct: 584 KARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643
Query: 562 FIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAA 613
+IP P R+ ILK + RK P+A DVD +A MT+G GA+L I + A
Sbjct: 644 YIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 695
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 115/177 (64%), Gaps = 3/177 (1%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
KTL+A+AVA E G FF I+ + + G S +R ++EA+ NAP+++FIDELDA+
Sbjct: 251 KTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIA 310
Query: 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKI 561
+R K G ER ++QLL +DG + R +VI +A+TNRP+ +DPAL R GRFDR++
Sbjct: 311 PKRE--KTHGEVER-RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREV 367
Query: 562 FIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMR 618
I P GR+EIL++H + +ADDVD VA+ T G VGA+LA + AA+ +R
Sbjct: 368 DIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 115/177 (64%), Gaps = 3/177 (1%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
KTL+A+AVA E G FF I+ + + G S +R ++EA+ NAP+++FIDELDA+
Sbjct: 251 KTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIA 310
Query: 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKI 561
+R K G ER ++QLL +DG + R +VI +A+TNRP+ +DPAL R GRFDR++
Sbjct: 311 PKRE--KTHGEVER-RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREV 367
Query: 562 FIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMR 618
I P GR+EIL++H + +ADDVD VA+ T G VGA+LA + AA+ +R
Sbjct: 368 DIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 115/177 (64%), Gaps = 3/177 (1%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
KTL+A+AVA E G FF I+ + + G S +R ++EA+ NAP+++FIDELDA+
Sbjct: 251 KTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIA 310
Query: 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKI 561
+R K G ER ++QLL +DG + R +VI +A+TNRP+ +DPAL R GRFDR++
Sbjct: 311 PKRE--KTHGEVER-RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREV 367
Query: 562 FIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMR 618
I P GR+EIL++H + +ADDVD VA+ T G VGA+LA + AA+ +R
Sbjct: 368 DIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 115/177 (64%), Gaps = 3/177 (1%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
KTL+A+AVA E G FF I+ + + G S +R ++EA+ NAP+++FIDELDA+
Sbjct: 251 KTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIA 310
Query: 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKI 561
+R K G ER ++QLL +DG + R +VI +A+TNRP+ +DPAL R GRFDR++
Sbjct: 311 PKRE--KTHGEVER-RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREV 367
Query: 562 FIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMR 618
I P GR+EIL++H + +ADDVD VA+ T G VGA+LA + AA+ +R
Sbjct: 368 DIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 137 bits (345), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 112/182 (61%), Gaps = 8/182 (4%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
KTLLAKAVA E+G+NF S+ + + +YVG VR ++Q AK++AP V+F DE+DA+
Sbjct: 57 KTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALC 116
Query: 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKI 561
R + +G R +NQLL +DG E R V +A+TNRPDI+DPA++RPGR D+ +
Sbjct: 117 PRRS-DRETGASVR--VVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTL 173
Query: 562 FIPKPGLIGRMEILKV---HARKKPMADDVDYLAVAS--MTDGMVGAELANIVEVAAINM 616
F+ P R+ ILK + K P+ DV+ A+A D GA+L+ +V A+I
Sbjct: 174 FVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICA 233
Query: 617 MR 618
+R
Sbjct: 234 LR 235
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 132 bits (332), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 106/191 (55%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
KTL A+AVA F + S+ V+ YVG GA VR L++ A+ ++F DE+DAVG
Sbjct: 256 KTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVG 315
Query: 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKI 561
R G E T+ +L+ LDGF+ RGN+ + +TNRP+ LDPAL+RPGR DRK+
Sbjct: 316 GARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKV 375
Query: 562 FIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGR 621
P L GR I ++H++ + + + ++ + GAEL ++ A + +R R
Sbjct: 376 EFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR 435
Query: 622 TEITTDDLLQA 632
T D L+A
Sbjct: 436 KVATEKDFLKA 446
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 122/231 (52%), Gaps = 7/231 (3%)
Query: 418 SDMYRRRGVRXXXXXXXXXXXXXXKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRV 477
+D+Y + G+ KT+L KAVA F ++ S+FV Y+G G V
Sbjct: 195 ADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMV 254
Query: 478 RSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVIT 537
R +++ A++NAPS++FIDE+D++ +R + +E L +LL +DGF+ NV
Sbjct: 255 RDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKV 314
Query: 538 IASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRME---ILKVHARKKPMADDVDYLAVA 594
I +TNR D LDPAL+RPGR DRKI P L R E I A K +A + D ++
Sbjct: 315 IMATNRADTLDPALLRPGRLDRKIEF--PSLRDRRERRLIFGTIASKMSLAPEADLDSLI 372
Query: 595 SMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQ--AAQIEERGMLDR 643
D + GA +A I++ A + +R R I DL + A Q++ +D+
Sbjct: 373 IRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDK 423
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 105/182 (57%), Gaps = 13/182 (7%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
K+ LAKAVA EA FFS+S+S V ++G V+ L+ A++N PS++FIDE+DA+
Sbjct: 73 KSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALT 132
Query: 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGN----VITIASTNRPDILDPALVRPGRF 557
RG +G R +LLV ++G GN V+ + +TN P LD A+ R RF
Sbjct: 133 GTRG--EGESEASRRIK-TELLVQMNGV---GNDSQGVLVLGATNIPWQLDSAIRR--RF 184
Query: 558 DRKIFIPKPGLIGRMEILKVHARKKP-MADDVDYLAVASMTDGMVGAELANIVEVAAINM 616
+R+I+IP P L R + +++ P + DY + +MT+G G+++A +V+ A +
Sbjct: 185 ERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQP 244
Query: 617 MR 618
+R
Sbjct: 245 IR 246
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 105/182 (57%), Gaps = 13/182 (7%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
K+ LAKAVA EA FFS+S+S V ++G V+ L+ A++N PS++FID++DA+
Sbjct: 64 KSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALT 123
Query: 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGN----VITIASTNRPDILDPALVRPGRF 557
RG +G R +LLV ++G GN V+ + +TN P LD A+ R RF
Sbjct: 124 GTRG--EGESEASRRIK-TELLVQMNGV---GNDSQGVLVLGATNIPWQLDSAIRR--RF 175
Query: 558 DRKIFIPKPGLIGRMEILKVHARKKP-MADDVDYLAVASMTDGMVGAELANIVEVAAINM 616
+R+I+IP P L R + +++ P + DY + +MT+G G+++A +V+ A +
Sbjct: 176 ERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQP 235
Query: 617 MR 618
+R
Sbjct: 236 IR 237
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 105/183 (57%), Gaps = 15/183 (8%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
K+ LAKAVA EA FFS+S+S V ++G V+ L+ A++N PS++FID++DA+
Sbjct: 97 KSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALT 156
Query: 502 RERGLIKGSGGQERDATL-NQLLVCLDGFEGRGN----VITIASTNRPDILDPALVRPGR 556
R G G E + +LLV ++G GN V+ + +TN P LD A+ R R
Sbjct: 157 GTR----GEGESEASRRIKTELLVQMNGV---GNDSQGVLVLGATNIPWQLDSAIRR--R 207
Query: 557 FDRKIFIPKPGLIGRMEILKVHARKKP-MADDVDYLAVASMTDGMVGAELANIVEVAAIN 615
F+R+I+IP P L R + +++ P + DY + +MT+G G+++A +V+ A +
Sbjct: 208 FERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQ 267
Query: 616 MMR 618
+R
Sbjct: 268 PIR 270
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 105/182 (57%), Gaps = 13/182 (7%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
K+ LAKAVA EA FFS+S+S V ++G V+ L+ A++N PS++FID++DA+
Sbjct: 82 KSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALT 141
Query: 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGN----VITIASTNRPDILDPALVRPGRF 557
RG +G R +LLV ++G GN V+ + +TN P LD A+ R RF
Sbjct: 142 GTRG--EGESEASRRIK-TELLVQMNGV---GNDSQGVLVLGATNIPWQLDSAIRR--RF 193
Query: 558 DRKIFIPKPGLIGRMEILKVHARKKP-MADDVDYLAVASMTDGMVGAELANIVEVAAINM 616
+R+I+IP P L R + +++ P + DY + +MT+G G+++A +V+ A +
Sbjct: 194 ERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQP 253
Query: 617 MR 618
+R
Sbjct: 254 IR 255
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 110/189 (58%), Gaps = 16/189 (8%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
KT+LAKAVA E+ FF+ISA+ YVG G VR+L+ A++ PS++FID++D++
Sbjct: 161 KTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLL 220
Query: 502 RERGLIKGSGGQERDATL---NQLLVCLDGFEGRGN--VITIASTNRPDILDPALVRPGR 556
ER +G E DA+ + L+ DG + G+ V+ + +TNRP LD A++R R
Sbjct: 221 CER--REG----EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--R 272
Query: 557 FDRKIFIPKPGLIGRMEILKVHARKK--PMADDVDYLAVASMTDGMVGAELANIVEVAAI 614
F +++++ P R+ +LK K+ P+ + +A MTDG G++L + + AA+
Sbjct: 273 FIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQK-ELAQLARMTDGYSGSDLTALAKDAAL 331
Query: 615 NMMRDGRTE 623
+R+ + E
Sbjct: 332 GPIRELKPE 340
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 100/181 (55%), Gaps = 10/181 (5%)
Query: 442 KTLLAKAVAGEAG-VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAV 500
K+ LAKAVA EA FFSIS+S V ++G V++L+Q A++N PS++FIDE+D++
Sbjct: 180 KSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL 239
Query: 501 GRERGLIKGSGGQERDATLNQLLVCLDGFEGRGN--VITIASTNRPDILDPALVRPGRFD 558
R + + + LV + G G N ++ + +TN P +LD A+ R RF+
Sbjct: 240 CGSRSENESEAARR---IKTEFLVQMQGV-GVDNDGILVLGATNIPWVLDSAIRR--RFE 293
Query: 559 RKIFIPKPGLIGRMEILKVH-ARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMM 617
++I+IP P R + ++H + + D+ + TDG GA+++ IV A + +
Sbjct: 294 KRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPV 353
Query: 618 R 618
R
Sbjct: 354 R 354
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 105/203 (51%), Gaps = 14/203 (6%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
KTL+ K +A ++G FFSISAS +VG G VR+L+ A+ P+V+FIDE+D++
Sbjct: 130 KTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLL 189
Query: 502 RERGLIKGSGGQERDATL-NQLLVCLDG--FEGRGNVITIASTNRPDILDPALVRPGRFD 558
+R G G E + + LV LDG ++ + +TNRP +D A R R
Sbjct: 190 SQR----GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLV 243
Query: 559 RKIFIPKPGLIGRMEI-LKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMM 617
++++IP P R +I + + ++++ + + + +D GA++ + A++ +
Sbjct: 244 KRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPI 303
Query: 618 RDGRT----EITTDDLLQAAQIE 636
R +T IT D + A I+
Sbjct: 304 RSLQTADIATITPDQVRPIAYID 326
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 100/181 (55%), Gaps = 10/181 (5%)
Query: 442 KTLLAKAVAGEAG-VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAV 500
K+ LAKAVA EA FFSIS+S V ++G V++L+Q A++N PS++FIDE+D++
Sbjct: 58 KSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL 117
Query: 501 GRERGLIKGSGGQERDATLNQLLVCLDGFEGRGN--VITIASTNRPDILDPALVRPGRFD 558
R + + + LV + G G N ++ + +TN P +LD A+ R RF+
Sbjct: 118 CGSRSENESEAARR---IKTEFLVQMQGV-GVDNDGILVLGATNIPWVLDSAIRR--RFE 171
Query: 559 RKIFIPKPGLIGRMEILKVH-ARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMM 617
++I+IP P R + K+H + + D+ + TDG GA+++ IV A + +
Sbjct: 172 KRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPV 231
Query: 618 R 618
R
Sbjct: 232 R 232
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 112/228 (49%), Gaps = 21/228 (9%)
Query: 442 KTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501
KTLLA+AVA E F +ISA+ YVG G VR+L+ A+ PS++FIDE+D++
Sbjct: 67 KTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLL 126
Query: 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGN---VITIASTNRPDILDPALVRPGRFD 558
ER + + + LV DG G + ++ +A+TNRP LD A +R RF
Sbjct: 127 SERSSSEHEASRRLK---TEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFT 181
Query: 559 RKIFIPKPGLIGRMEILKVHARKKPMADDVDYL-AVASMTDGMVGAELANIVEVAAINMM 617
+++++ P R +L +K+ D + L +A +TDG G++L + + AA+ +
Sbjct: 182 KRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPI 241
Query: 618 RDGRTE------------ITTDDLLQAAQIEERGMLDRKERSSETWRQ 653
R+ E IT D + + R + + S E W Q
Sbjct: 242 RELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQ 289
>pdb|2DI4|A Chain A, Crystal Structure Of The Ftsh Protease Domain
pdb|2DI4|B Chain B, Crystal Structure Of The Ftsh Protease Domain
Length = 238
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 97/196 (49%), Gaps = 20/196 (10%)
Query: 647 SSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSR 706
S + ++AI+EA A++ + D + ++I PR G LG + K + +
Sbjct: 12 SPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPR-GMALGVTQQLPIEDKH---IYDK 67
Query: 707 QSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAA-RTFVLGGLSDKHFGLSNF 765
+ L + I V L RAA+E++ G+ ++T A A R + G+SDK ++
Sbjct: 68 KDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIR 127
Query: 766 WVA---------------DRINEIDTEALRILNLCYERAKEILQRNRNLLDAVVNELVEK 810
VA D + EID E RI+ YE+AK I++ + L AVV +L+EK
Sbjct: 128 RVANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEK 187
Query: 811 KSLTKQEFFHLVELHG 826
+++T +EF + +L+G
Sbjct: 188 ETITCEEFVEVFKLYG 203
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 564 PKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTE 623
P P R++ILK+H+RK + ++ +A + G GAE+ + A +R+ R
Sbjct: 1 PPPNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRERRVH 60
Query: 624 ITTDDLLQA 632
+T +D A
Sbjct: 61 VTQEDFEXA 69
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 566 PGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEIT 625
P R++ILK+H+RK + ++ +A + G GAE+ + A + +R+ R +T
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 70
Query: 626 TDDLLQA 632
+D A
Sbjct: 71 QEDFEMA 77
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%)
Query: 566 PGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEIT 625
P L GR I ++H++ + + + ++ + GAEL ++ A + +R R T
Sbjct: 8 PDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVAT 67
Query: 626 TDDLLQA 632
D L+A
Sbjct: 68 EKDFLKA 74
>pdb|1CB0|A Chain A, Structure Of Human 5'-deoxy-5'-methylthioadenosine
Phosphorylase At 1.7 A Resolution
pdb|1CG6|A Chain A, Structure Of Human 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With
5'-Deoxy-5'-Methylthioadenosine And Sulfate At 1.7 A
Resolution
pdb|1K27|A Chain A, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase In Complex With A Transition State
Analogue
pdb|1SD1|A Chain A, Structure Of Human 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Formycin A
pdb|1SD2|A Chain A, Structure Of Human 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With 5'-Methylthiotubercidin
pdb|3OZC|A Chain A, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase In Complex With Pcl-Phenylthiodadmeimma
pdb|3OZD|A Chain A, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase In Complex With Pcl-Phenylthiodadmeimma
pdb|3OZD|B Chain B, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase In Complex With Pcl-Phenylthiodadmeimma
pdb|3OZE|A Chain A, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|B Chain B, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|C Chain C, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|D Chain D, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|E Chain E, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|F Chain F, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
Length = 283
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 110 LKKWSKDLPIVSDRIAY-TEIFSLKDEGKLKHVIKSPSGSLRQKAEPVLVVLEDSRVLRT 168
L + + I+ ++ Y I++LK+EG ++ + GSLR++ +P +V+ D + RT
Sbjct: 58 LARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRT 117
Query: 169 VL 170
+
Sbjct: 118 TM 119
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 17/131 (12%)
Query: 469 YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG 528
Y G R ++L ++ + + S++FIDE+ + G SGGQ A L + L+
Sbjct: 259 YRGDFEKRFKALLKQLEQDTNSILFIDEIHTI---IGAGAASGGQVDAANLIKPLLS--- 312
Query: 529 FEGRGNVITIASTNRPDIL-----DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP 583
G + I ST + D AL R RF +KI I +P + ++I+ K
Sbjct: 313 ---SGKIRVIGSTTYQEFSNIFEKDRALAR--RF-QKIDITEPSIEETVQIINGLKPKYE 366
Query: 584 MADDVDYLAVA 594
DV Y A A
Sbjct: 367 AHHDVRYTAKA 377
>pdb|1V6T|A Chain A, Crystal Structure Of Lactam Utilization Protein From
Pyrococcus Horikoshii Ot3
Length = 255
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 108 EQLKKWSKDLPIVSDRIAYTEIFSLKDEGKLK--HVI-----KSPSGSLRQKAEPVLVVL 160
E + + KDL +V+ ++ + + + +E LK H + +P G+L + P V+
Sbjct: 130 EGILDFDKDLILVT--LSNSRVADIAEEMGLKVAHEVFADRAYNPDGTLVPRGRPGAVIE 187
Query: 161 EDSRVLRTVLPSLDSN--RKFWESWDELKIDSLCVNAYTP 198
+ + V+ + R W +LK+D++CV+ P
Sbjct: 188 DKEEIAERVISMVKDGGIRAINGEWVDLKVDTICVHGDNP 227
>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|B Chain B, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|C Chain C, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|D Chain D, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|E Chain E, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|F Chain F, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|G Chain G, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
Length = 224
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 636 EERGMLDRKERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMD 695
E + LD + S+ T V M+ +N+P++ + I R GR+ Y+ + D
Sbjct: 135 ENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEVAILGVHRILEREGRKYMYLSLSCD 194
Query: 696 HMKFKEGMLSRQSLLD 711
H + +G ++ + ++D
Sbjct: 195 H-RLIDGAVATRFIVD 209
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 29.6 bits (65), Expect = 7.2, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 568 LIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 627
L GR I ++H++ + + + ++ + GAEL ++ A +R R T
Sbjct: 3 LEGRANIFRIHSKSXSVERGIRWELISRLCPNSTGAELRSVCTEAGXFAIRARRKVATEK 62
Query: 628 DLLQA 632
D L+A
Sbjct: 63 DFLKA 67
>pdb|2B39|A Chain A, Structure Of Mammalian C3 With An Intact Thioester At 3a
Resolution
pdb|2B39|B Chain B, Structure Of Mammalian C3 With An Intact Thioester At 3a
Resolution
Length = 1661
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 134 DEGKLKHVIKSPSGSLRQKAEPVLVVLEDSRVLRTVLPSLDSNRKFWESWDELKIDSLCV 193
D +LKH+I++PSG Q ++ + + + L S D KF + ++ L
Sbjct: 995 DGERLKHLIQTPSGCGEQN----MIGMTPTVIAVHYLDSTDQWEKFGLEKRQESLE-LIR 1049
Query: 194 NAYTPPLKKPEVPNPYLGFLWRVPASMLSTF 224
YT L + + Y F +R P++ L+ +
Sbjct: 1050 KGYTQQLAFRQKSSAYAAFQYRPPSTWLTAY 1080
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,560,659
Number of Sequences: 62578
Number of extensions: 757479
Number of successful extensions: 1783
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1700
Number of HSP's gapped (non-prelim): 50
length of query: 862
length of database: 14,973,337
effective HSP length: 107
effective length of query: 755
effective length of database: 8,277,491
effective search space: 6249505705
effective search space used: 6249505705
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)