Query 002961
Match_columns 862
No_of_seqs 526 out of 4777
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 14:15:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002961.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002961hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0734 AAA+-type ATPase conta 100.0 4.5E-76 9.8E-81 645.5 31.5 399 420-825 328-735 (752)
2 KOG0731 AAA+-type ATPase conta 100.0 3.1E-68 6.7E-73 619.0 34.9 412 420-838 335-762 (774)
3 COG0465 HflB ATP-dependent Zn 100.0 8E-68 1.7E-72 607.6 36.2 402 420-826 174-592 (596)
4 CHL00176 ftsH cell division pr 100.0 1.6E-65 3.5E-70 605.0 40.1 402 423-828 210-629 (638)
5 PRK10733 hflB ATP-dependent me 100.0 5E-63 1.1E-67 589.8 42.4 399 424-826 180-597 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 2.6E-60 5.7E-65 553.6 40.1 397 421-823 80-495 (495)
7 CHL00206 ycf2 Ycf2; Provisiona 100.0 7.4E-44 1.6E-48 437.9 25.8 292 422-729 1623-1968(2281)
8 COG1222 RPT1 ATP-dependent 26S 100.0 1.1E-40 2.5E-45 355.6 20.2 219 420-638 176-394 (406)
9 KOG0730 AAA+-type ATPase [Post 100.0 6.1E-36 1.3E-40 339.7 21.0 218 418-638 457-676 (693)
10 PF01434 Peptidase_M41: Peptid 100.0 1.4E-34 3.1E-39 301.4 18.5 193 625-821 1-213 (213)
11 KOG0733 Nuclear AAA ATPase (VC 100.0 1.8E-34 3.8E-39 322.8 18.1 217 418-637 534-770 (802)
12 KOG0728 26S proteasome regulat 100.0 2.1E-31 4.6E-36 271.0 24.2 218 420-637 172-389 (404)
13 KOG0733 Nuclear AAA ATPase (VC 100.0 2.2E-32 4.8E-37 306.0 15.9 199 418-619 212-414 (802)
14 KOG0727 26S proteasome regulat 100.0 8.3E-31 1.8E-35 267.0 25.3 217 420-636 180-396 (408)
15 KOG0652 26S proteasome regulat 100.0 2E-31 4.3E-36 272.5 14.7 218 419-636 195-412 (424)
16 KOG0726 26S proteasome regulat 100.0 3.2E-31 7E-36 274.7 12.3 218 419-637 209-427 (440)
17 PTZ00454 26S protease regulato 100.0 5.1E-30 1.1E-34 289.5 20.9 219 420-638 170-388 (398)
18 KOG0736 Peroxisome assembly fa 100.0 5.3E-30 1.1E-34 293.3 20.8 213 422-635 698-931 (953)
19 KOG0729 26S proteasome regulat 100.0 4E-30 8.6E-35 263.7 13.1 219 420-638 202-420 (435)
20 PTZ00361 26 proteosome regulat 100.0 4.2E-29 9.1E-34 283.8 21.6 218 420-637 208-425 (438)
21 PRK03992 proteasome-activating 100.0 4.6E-29 9.9E-34 282.5 21.5 219 420-638 156-374 (389)
22 KOG0738 AAA+-type ATPase [Post 100.0 3.3E-29 7.2E-34 269.0 17.9 204 428-635 244-468 (491)
23 COG1223 Predicted ATPase (AAA+ 100.0 2.7E-29 5.8E-34 257.4 15.8 210 423-636 145-355 (368)
24 TIGR01242 26Sp45 26S proteasom 100.0 5.4E-29 1.2E-33 280.2 16.5 215 421-635 148-362 (364)
25 KOG0735 AAA+-type ATPase [Post 100.0 1.6E-28 3.5E-33 278.6 16.7 201 416-619 688-888 (952)
26 CHL00195 ycf46 Ycf46; Provisio 100.0 4.7E-28 1E-32 279.1 20.6 209 423-636 253-463 (489)
27 TIGR01243 CDC48 AAA family ATP 100.0 1E-27 2.2E-32 292.2 20.8 216 419-636 477-710 (733)
28 COG0464 SpoVK ATPases of the A 100.0 1.3E-27 2.8E-32 279.4 19.0 212 421-635 268-482 (494)
29 KOG0651 26S proteasome regulat 99.9 1.8E-27 3.8E-32 249.7 11.5 216 420-635 157-372 (388)
30 KOG0739 AAA+-type ATPase [Post 99.9 9.2E-26 2E-30 235.0 16.4 187 427-618 164-352 (439)
31 KOG0737 AAA+-type ATPase [Post 99.9 7.9E-26 1.7E-30 243.6 15.5 189 426-619 124-314 (386)
32 TIGR03689 pup_AAA proteasome A 99.9 3.6E-25 7.9E-30 254.9 19.6 233 420-654 207-497 (512)
33 PLN00020 ribulose bisphosphate 99.9 2.2E-24 4.8E-29 234.8 20.8 232 423-666 142-394 (413)
34 KOG0741 AAA+-type ATPase [Post 99.9 2.2E-24 4.7E-29 238.6 15.3 245 422-667 249-530 (744)
35 COG0466 Lon ATP-dependent Lon 99.9 2.2E-23 4.8E-28 239.6 20.6 353 220-636 184-584 (782)
36 KOG0730 AAA+-type ATPase [Post 99.9 2.2E-23 4.8E-28 237.8 17.8 206 419-634 208-414 (693)
37 TIGR01243 CDC48 AAA family ATP 99.9 1.8E-22 4E-27 246.2 19.7 213 421-636 204-435 (733)
38 KOG2004 Mitochondrial ATP-depe 99.9 1E-21 2.2E-26 224.3 17.1 298 220-580 271-597 (906)
39 KOG0732 AAA+-type ATPase conta 99.9 1.2E-21 2.5E-26 235.2 13.0 202 416-620 286-493 (1080)
40 TIGR00763 lon ATP-dependent pr 99.8 3E-20 6.5E-25 227.5 22.6 352 220-635 181-585 (775)
41 KOG0740 AAA+-type ATPase [Post 99.8 6.4E-21 1.4E-25 212.7 11.8 185 428-617 185-372 (428)
42 PRK10787 DNA-binding ATP-depen 99.8 2.7E-19 5.9E-24 217.5 19.4 352 220-636 183-582 (784)
43 KOG0742 AAA+-type ATPase [Post 99.8 4.4E-17 9.5E-22 176.4 30.5 199 428-633 383-609 (630)
44 PF00004 AAA: ATPase family as 99.7 2.3E-17 4.9E-22 157.4 9.7 130 432-565 1-132 (132)
45 KOG0743 AAA+-type ATPase [Post 99.7 4.2E-17 9.2E-22 180.9 10.9 200 420-635 226-433 (457)
46 COG0488 Uup ATPase components 99.7 5.2E-16 1.1E-20 180.8 16.0 214 319-546 225-472 (530)
47 KOG0744 AAA+-type ATPase [Post 99.7 5.3E-16 1.2E-20 164.4 13.5 206 428-637 176-415 (423)
48 KOG0735 AAA+-type ATPase [Post 99.6 4.6E-15 1E-19 170.1 18.4 208 426-634 428-646 (952)
49 PRK10865 protein disaggregatio 99.6 2.8E-13 6E-18 167.5 24.4 324 223-581 380-781 (857)
50 CHL00181 cbbX CbbX; Provisiona 99.6 5E-14 1.1E-18 153.6 15.8 188 429-629 59-271 (287)
51 TIGR02881 spore_V_K stage V sp 99.6 7.3E-14 1.6E-18 150.5 16.9 176 429-617 42-239 (261)
52 TIGR03346 chaperone_ClpB ATP-d 99.5 1.1E-12 2.4E-17 162.7 26.8 325 223-580 375-777 (852)
53 KOG0736 Peroxisome assembly fa 99.5 1E-13 2.2E-18 160.7 15.3 202 427-636 429-653 (953)
54 COG0542 clpA ATP-binding subun 99.5 3.3E-13 7.2E-18 160.6 18.6 133 430-580 522-706 (786)
55 COG2256 MGS1 ATPase related to 99.5 1.8E-13 3.8E-18 150.1 14.1 178 428-636 47-238 (436)
56 TIGR02880 cbbX_cfxQ probable R 99.5 2.2E-13 4.9E-18 148.4 13.4 177 429-617 58-254 (284)
57 TIGR03345 VI_ClpV1 type VI sec 99.5 4.8E-12 1E-16 156.2 25.6 335 223-611 389-825 (852)
58 PRK00080 ruvB Holliday junctio 99.5 9.6E-13 2.1E-17 146.5 17.0 183 428-635 50-249 (328)
59 COG0464 SpoVK ATPases of the A 99.4 2.4E-12 5.2E-17 151.1 19.9 210 422-636 11-226 (494)
60 TIGR00635 ruvB Holliday juncti 99.4 1.9E-12 4.1E-17 142.3 17.3 182 429-635 30-228 (305)
61 PF05496 RuvB_N: Holliday junc 99.4 8.1E-13 1.7E-17 136.6 11.0 159 429-612 50-225 (233)
62 KOG0927 Predicted transporter 99.4 2.8E-12 6.1E-17 144.6 15.7 212 321-546 296-542 (614)
63 COG2255 RuvB Holliday junction 99.4 4.1E-12 8.8E-17 133.7 15.1 183 428-635 51-250 (332)
64 TIGR02639 ClpA ATP-dependent C 99.4 1.8E-12 4E-17 158.4 14.2 198 427-636 201-429 (731)
65 TIGR00362 DnaA chromosomal rep 99.4 5.2E-12 1.1E-16 144.7 15.5 210 430-667 137-358 (405)
66 PRK11034 clpA ATP-dependent Cl 99.4 2.7E-12 5.8E-17 155.8 13.3 197 427-635 205-432 (758)
67 PRK00149 dnaA chromosomal repl 99.3 6.9E-12 1.5E-16 145.5 13.6 188 430-635 149-348 (450)
68 KOG2028 ATPase related to the 99.3 2.5E-11 5.5E-16 130.8 16.2 177 430-635 163-367 (554)
69 PRK06893 DNA replication initi 99.3 1.4E-11 3E-16 130.4 14.0 180 430-633 40-227 (229)
70 TIGR02928 orc1/cdc6 family rep 99.3 3E-11 6.6E-16 136.1 16.9 195 428-636 39-274 (365)
71 PRK14956 DNA polymerase III su 99.3 3.4E-11 7.5E-16 137.9 16.2 183 428-634 39-244 (484)
72 PRK14088 dnaA chromosomal repl 99.3 2.3E-11 5E-16 140.4 14.4 191 430-635 131-331 (440)
73 CHL00095 clpC Clp protease ATP 99.3 2.2E-10 4.9E-15 141.8 23.9 133 431-581 541-734 (821)
74 TIGR02902 spore_lonB ATP-depen 99.3 2.6E-11 5.6E-16 143.0 14.9 188 428-634 85-330 (531)
75 PRK00411 cdc6 cell division co 99.3 8.8E-11 1.9E-15 133.8 17.6 196 428-636 54-282 (394)
76 PRK13342 recombination factor 99.3 7.6E-11 1.6E-15 135.4 16.9 173 429-635 36-218 (413)
77 PRK14086 dnaA chromosomal repl 99.3 5.3E-11 1.2E-15 139.7 14.9 188 431-635 316-514 (617)
78 PRK14962 DNA polymerase III su 99.3 9.1E-11 2E-15 136.1 16.7 177 428-634 35-240 (472)
79 KOG0066 eIF2-interacting prote 99.2 6.8E-11 1.5E-15 129.7 14.4 211 320-546 485-737 (807)
80 PRK12323 DNA polymerase III su 99.2 4.8E-11 1E-15 139.9 13.5 184 427-634 36-247 (700)
81 PRK12422 chromosomal replicati 99.2 8.3E-11 1.8E-15 135.6 15.2 189 430-635 142-342 (445)
82 TIGR03420 DnaA_homol_Hda DnaA 99.2 8.7E-11 1.9E-15 123.2 13.6 181 427-633 36-225 (226)
83 PRK14961 DNA polymerase III su 99.2 1.5E-10 3.2E-15 130.7 16.2 184 427-634 36-242 (363)
84 PRK14960 DNA polymerase III su 99.2 1.3E-10 2.8E-15 136.6 15.9 184 427-634 35-241 (702)
85 TIGR03345 VI_ClpV1 type VI sec 99.2 5.5E-11 1.2E-15 146.9 13.6 193 428-633 207-428 (852)
86 PRK07003 DNA polymerase III su 99.2 1.7E-10 3.7E-15 136.9 17.0 184 427-634 36-242 (830)
87 PRK06645 DNA polymerase III su 99.2 1.5E-10 3.2E-15 134.9 16.0 187 427-634 41-254 (507)
88 PRK08084 DNA replication initi 99.2 1.5E-10 3.2E-15 123.0 14.3 179 429-633 45-233 (235)
89 PRK14958 DNA polymerase III su 99.2 2.2E-10 4.8E-15 134.2 15.9 184 427-634 36-242 (509)
90 PRK08727 hypothetical protein; 99.2 2.3E-10 4.9E-15 121.5 13.7 180 430-635 42-230 (233)
91 PRK05642 DNA replication initi 99.2 3.6E-10 7.8E-15 120.0 15.2 178 430-633 46-232 (234)
92 PRK08903 DnaA regulatory inact 99.2 3.8E-10 8.2E-15 119.0 14.6 176 427-634 40-224 (227)
93 PTZ00112 origin recognition co 99.2 4.2E-10 9.2E-15 133.8 16.2 189 429-636 780-1006(1164)
94 PRK14964 DNA polymerase III su 99.2 3.4E-10 7.4E-15 131.0 15.0 178 427-634 33-239 (491)
95 PRK07994 DNA polymerase III su 99.2 3.7E-10 8E-15 134.3 15.7 182 428-633 37-241 (647)
96 PRK04195 replication factor C 99.1 4.2E-10 9E-15 131.8 15.3 176 429-633 39-222 (482)
97 PRK14087 dnaA chromosomal repl 99.1 3E-10 6.4E-15 131.4 13.8 189 430-635 142-347 (450)
98 PRK14951 DNA polymerase III su 99.1 6.1E-10 1.3E-14 132.2 16.2 184 427-634 36-247 (618)
99 PRK14949 DNA polymerase III su 99.1 7.2E-10 1.6E-14 133.9 16.7 183 427-633 36-241 (944)
100 TIGR02640 gas_vesic_GvpN gas v 99.1 4.1E-10 8.9E-15 121.6 13.3 182 428-635 20-256 (262)
101 PLN03025 replication factor C 99.1 8.9E-10 1.9E-14 122.3 16.1 172 431-633 36-220 (319)
102 PRK10865 protein disaggregatio 99.1 1.8E-10 4E-15 142.6 11.7 142 427-581 197-356 (857)
103 PRK08691 DNA polymerase III su 99.1 5.4E-10 1.2E-14 132.5 14.8 184 427-634 36-242 (709)
104 PRK05563 DNA polymerase III su 99.1 7.4E-10 1.6E-14 131.3 15.8 184 427-634 36-242 (559)
105 PRK14969 DNA polymerase III su 99.1 7.4E-10 1.6E-14 130.5 15.6 184 427-634 36-242 (527)
106 COG0593 DnaA ATPase involved i 99.1 1.4E-09 3E-14 122.5 16.7 189 430-636 114-313 (408)
107 PRK05342 clpX ATP-dependent pr 99.1 9.1E-10 2E-14 125.6 15.5 143 429-576 108-322 (412)
108 PRK13341 recombination factor 99.1 9.9E-10 2.2E-14 133.0 16.2 178 429-635 52-246 (725)
109 TIGR03346 chaperone_ClpB ATP-d 99.1 4.6E-10 1E-14 139.5 13.8 178 427-617 192-397 (852)
110 TIGR02030 BchI-ChlI magnesium 99.1 9.1E-10 2E-14 122.5 14.6 133 489-637 132-310 (337)
111 TIGR02903 spore_lon_C ATP-depe 99.1 1E-08 2.3E-13 123.0 24.4 192 427-637 173-431 (615)
112 PRK14957 DNA polymerase III su 99.1 1.2E-09 2.6E-14 128.2 15.6 183 428-634 37-242 (546)
113 PRK14963 DNA polymerase III su 99.1 1.6E-09 3.4E-14 126.8 16.0 176 428-634 35-238 (504)
114 TIGR02397 dnaX_nterm DNA polym 99.1 1.5E-09 3.3E-14 121.7 14.8 183 428-634 35-240 (355)
115 PF00308 Bac_DnaA: Bacterial d 99.1 4E-10 8.6E-15 118.5 9.4 169 431-616 36-216 (219)
116 CHL00095 clpC Clp protease ATP 99.1 5.8E-10 1.3E-14 138.2 12.4 180 424-616 195-401 (821)
117 PRK12402 replication factor C 99.1 2.5E-09 5.4E-14 119.0 16.3 179 431-634 38-247 (337)
118 PRK07764 DNA polymerase III su 99.1 1.3E-09 2.9E-14 133.4 15.0 185 427-634 35-244 (824)
119 TIGR02639 ClpA ATP-dependent C 99.1 1.1E-09 2.4E-14 134.2 14.2 134 431-580 486-663 (731)
120 PRK14959 DNA polymerase III su 99.0 2.7E-09 5.8E-14 126.1 16.4 183 428-634 37-242 (624)
121 PRK06620 hypothetical protein; 99.0 1.4E-09 3.1E-14 113.9 12.5 164 430-633 45-213 (214)
122 COG1474 CDC6 Cdc6-related prot 99.0 3.6E-09 7.7E-14 119.1 16.5 193 427-634 40-263 (366)
123 PRK14953 DNA polymerase III su 99.0 2.5E-09 5.5E-14 124.6 15.8 183 428-634 37-242 (486)
124 PRK11034 clpA ATP-dependent Cl 99.0 6.4E-10 1.4E-14 135.3 11.2 135 430-580 489-667 (758)
125 PRK10636 putative ABC transpor 99.0 2.9E-09 6.3E-14 128.7 16.8 134 406-545 311-462 (638)
126 TIGR00382 clpX endopeptidase C 99.0 2E-09 4.4E-14 122.3 14.4 185 429-618 116-386 (413)
127 PRK05896 DNA polymerase III su 99.0 2.4E-09 5.3E-14 125.9 14.7 183 427-633 36-241 (605)
128 PRK07133 DNA polymerase III su 99.0 3.5E-09 7.6E-14 126.8 16.0 184 427-634 38-241 (725)
129 PRK14952 DNA polymerase III su 99.0 1.7E-09 3.8E-14 127.9 13.1 185 427-634 33-242 (584)
130 PRK09111 DNA polymerase III su 99.0 4.2E-09 9.2E-14 125.2 16.1 184 427-634 44-255 (598)
131 PRK13407 bchI magnesium chelat 99.0 2.9E-09 6.3E-14 118.2 13.8 130 489-635 129-305 (334)
132 PRK11147 ABC transporter ATPas 99.0 3.3E-09 7.1E-14 128.3 15.5 135 406-545 318-472 (635)
133 PRK14970 DNA polymerase III su 99.0 4.1E-09 8.9E-14 119.2 15.1 184 427-634 37-231 (367)
134 KOG0989 Replication factor C, 99.0 6.6E-09 1.4E-13 110.9 15.1 164 427-613 55-235 (346)
135 PRK14965 DNA polymerase III su 99.0 4.2E-09 9E-14 125.5 15.4 183 427-633 36-241 (576)
136 TIGR01650 PD_CobS cobaltochela 99.0 2E-09 4.3E-14 118.3 11.5 142 425-580 60-234 (327)
137 COG2812 DnaX DNA polymerase II 99.0 3.3E-09 7.1E-14 122.7 13.8 184 427-634 36-242 (515)
138 PRK07940 DNA polymerase III su 99.0 2.6E-09 5.6E-14 121.4 11.9 160 425-607 32-213 (394)
139 PHA02544 44 clamp loader, smal 99.0 2.3E-09 5E-14 118.5 11.3 130 429-579 43-173 (316)
140 PRK09087 hypothetical protein; 99.0 3.1E-09 6.6E-14 112.3 11.7 171 430-635 45-221 (226)
141 cd00009 AAA The AAA+ (ATPases 99.0 1.9E-09 4.1E-14 103.0 9.3 121 428-564 18-150 (151)
142 PRK08451 DNA polymerase III su 99.0 9.7E-09 2.1E-13 120.1 15.9 184 427-634 34-240 (535)
143 CHL00081 chlI Mg-protoporyphyr 98.9 9.6E-09 2.1E-13 114.5 14.5 133 489-637 145-323 (350)
144 PRK14955 DNA polymerase III su 98.9 1.1E-08 2.3E-13 117.1 14.1 187 427-633 36-254 (397)
145 PRK06647 DNA polymerase III su 98.9 1.6E-08 3.5E-13 119.8 15.4 184 427-634 36-242 (563)
146 TIGR03015 pepcterm_ATPase puta 98.9 2.9E-08 6.4E-13 106.9 16.0 195 425-635 38-265 (269)
147 PRK06305 DNA polymerase III su 98.9 3.1E-08 6.8E-13 114.8 16.8 184 427-634 37-244 (451)
148 PRK00440 rfc replication facto 98.9 2.1E-08 4.6E-13 110.6 14.7 173 431-634 40-224 (319)
149 PRK14954 DNA polymerase III su 98.9 2.5E-08 5.4E-13 119.0 15.6 187 427-633 36-254 (620)
150 TIGR02031 BchD-ChlD magnesium 98.9 2.6E-08 5.6E-13 119.0 15.5 188 430-636 17-258 (589)
151 PRK14950 DNA polymerase III su 98.9 3.5E-08 7.6E-13 118.1 16.5 183 428-634 37-243 (585)
152 COG0714 MoxR-like ATPases [Gen 98.9 8.7E-09 1.9E-13 114.9 10.7 134 425-578 39-202 (329)
153 PRK14948 DNA polymerase III su 98.8 3E-08 6.4E-13 118.8 15.3 181 428-633 37-242 (620)
154 TIGR00390 hslU ATP-dependent p 98.8 6.4E-09 1.4E-13 117.0 9.0 85 488-576 247-343 (441)
155 TIGR00678 holB DNA polymerase 98.8 2.2E-08 4.9E-13 102.4 12.1 149 427-599 12-183 (188)
156 PRK05201 hslU ATP-dependent pr 98.8 6.3E-09 1.4E-13 117.2 8.2 85 488-576 249-345 (443)
157 smart00382 AAA ATPases associa 98.8 1.2E-08 2.6E-13 96.3 8.5 126 429-566 2-147 (148)
158 smart00350 MCM minichromosome 98.8 2.7E-08 5.8E-13 117.2 13.1 193 426-636 233-504 (509)
159 TIGR02442 Cob-chelat-sub cobal 98.8 2.9E-08 6.2E-13 119.8 13.2 188 430-636 26-304 (633)
160 PLN03073 ABC transporter F fam 98.8 6.9E-08 1.5E-12 117.8 16.2 133 407-545 508-659 (718)
161 PRK04132 replication factor C 98.8 4.8E-08 1E-12 119.3 13.6 171 432-633 567-751 (846)
162 PRK13531 regulatory ATPase Rav 98.8 6.4E-08 1.4E-12 111.1 13.8 191 427-634 37-281 (498)
163 KOG0062 ATPase component of AB 98.8 5.2E-08 1.1E-12 110.2 12.5 211 322-546 273-515 (582)
164 KOG1969 DNA replication checkp 98.8 5E-08 1.1E-12 113.9 12.4 167 427-619 323-518 (877)
165 PRK05707 DNA polymerase III su 98.7 4.9E-08 1.1E-12 108.6 11.9 152 427-600 20-196 (328)
166 PHA02244 ATPase-like protein 98.7 5.4E-08 1.2E-12 108.2 11.8 129 427-575 117-269 (383)
167 PRK14971 DNA polymerase III su 98.7 1.1E-07 2.3E-12 114.0 15.3 183 427-633 37-243 (614)
168 TIGR00368 Mg chelatase-related 98.7 7.5E-08 1.6E-12 112.5 13.2 192 424-634 206-497 (499)
169 PF07728 AAA_5: AAA domain (dy 98.7 9.8E-09 2.1E-13 99.6 4.9 109 431-557 1-139 (139)
170 PRK09862 putative ATP-dependen 98.7 1.2E-07 2.6E-12 110.5 14.1 196 423-634 204-490 (506)
171 PF05673 DUF815: Protein of un 98.7 1.5E-07 3.3E-12 99.0 13.3 162 427-610 50-243 (249)
172 COG1224 TIP49 DNA helicase TIP 98.7 3.3E-07 7.1E-12 99.7 15.8 97 536-635 322-431 (450)
173 COG0470 HolB ATPase involved i 98.6 8.4E-08 1.8E-12 105.9 8.4 128 427-575 22-177 (325)
174 PF05621 TniB: Bacterial TniB 98.6 8.5E-07 1.8E-11 96.2 15.4 191 429-632 61-285 (302)
175 PRK09112 DNA polymerase III su 98.6 2.4E-07 5.3E-12 104.0 11.5 163 427-610 43-242 (351)
176 COG0542 clpA ATP-binding subun 98.6 3.5E-07 7.7E-12 109.9 13.1 181 427-619 189-396 (786)
177 COG1239 ChlI Mg-chelatase subu 98.6 6.7E-07 1.5E-11 100.0 14.1 188 430-635 39-321 (423)
178 PRK15064 ABC transporter ATP-b 98.6 6.6E-07 1.4E-11 106.2 15.0 58 406-463 318-379 (530)
179 PRK07471 DNA polymerase III su 98.6 3.3E-07 7.1E-12 103.5 11.7 154 427-602 39-233 (365)
180 PF07724 AAA_2: AAA domain (Cd 98.6 8.7E-08 1.9E-12 96.9 6.3 114 430-546 4-132 (171)
181 COG1116 TauB ABC-type nitrate/ 98.6 1E-07 2.2E-12 100.1 6.9 55 408-462 4-62 (248)
182 PRK11331 5-methylcytosine-spec 98.6 2E-07 4.4E-12 106.2 9.7 133 428-565 193-357 (459)
183 PRK07993 DNA polymerase III su 98.5 3.9E-07 8.4E-12 101.7 11.6 153 427-602 22-199 (334)
184 PRK06871 DNA polymerase III su 98.5 4.9E-07 1.1E-11 100.2 12.0 133 427-578 22-178 (325)
185 PRK05564 DNA polymerase III su 98.5 4.6E-07 9.9E-12 100.5 11.4 146 427-600 24-183 (313)
186 PF07726 AAA_3: ATPase family 98.5 3.5E-08 7.5E-13 94.0 1.8 104 431-557 1-129 (131)
187 PRK11819 putative ABC transpor 98.5 1.5E-06 3.2E-11 103.9 15.8 134 407-545 324-477 (556)
188 KOG0741 AAA+-type ATPase [Post 98.5 5.2E-07 1.1E-11 102.0 10.9 141 430-576 539-683 (744)
189 PRK06964 DNA polymerase III su 98.5 3.1E-07 6.6E-12 102.5 8.6 133 427-578 19-203 (342)
190 TIGR03719 ABC_ABC_ChvD ATP-bin 98.5 2.1E-06 4.6E-11 102.5 15.8 57 407-463 322-382 (552)
191 COG1120 FepC ABC-type cobalami 98.5 2.7E-07 5.9E-12 98.4 7.2 55 408-462 3-61 (258)
192 cd03222 ABC_RNaseL_inhibitor T 98.4 2.9E-07 6.3E-12 93.6 6.6 77 424-500 20-101 (177)
193 COG1219 ClpX ATP-dependent pro 98.4 6.5E-07 1.4E-11 96.1 9.1 96 430-528 98-202 (408)
194 TIGR00602 rad24 checkpoint pro 98.4 1E-06 2.2E-11 105.3 11.7 188 427-633 108-352 (637)
195 PRK08769 DNA polymerase III su 98.4 1.2E-06 2.5E-11 97.0 11.5 153 427-603 24-204 (319)
196 COG1121 ZnuC ABC-type Mn/Zn tr 98.4 4.3E-07 9.4E-12 96.5 6.8 55 408-462 5-63 (254)
197 PRK08058 DNA polymerase III su 98.4 7.4E-07 1.6E-11 99.5 9.0 132 427-577 26-180 (329)
198 COG0488 Uup ATPase components 98.4 4E-07 8.6E-12 107.0 7.1 57 408-464 4-64 (530)
199 PRK06090 DNA polymerase III su 98.4 1E-06 2.2E-11 97.4 9.7 132 427-577 23-178 (319)
200 PTZ00111 DNA replication licen 98.4 2.6E-06 5.5E-11 104.1 13.5 133 425-576 488-654 (915)
201 PRK13406 bchD magnesium chelat 98.4 3.5E-06 7.6E-11 100.3 14.3 187 430-635 26-249 (584)
202 KOG1942 DNA helicase, TBP-inte 98.3 5.1E-06 1.1E-10 88.2 12.3 130 487-636 295-438 (456)
203 KOG0991 Replication factor C, 98.3 9.5E-07 2.1E-11 91.1 6.5 220 430-682 49-280 (333)
204 PRK08699 DNA polymerase III su 98.3 1.3E-06 2.7E-11 97.3 8.0 131 427-577 19-183 (325)
205 cd03216 ABC_Carb_Monos_I This 98.3 1.5E-06 3.4E-11 87.0 7.4 110 423-546 20-144 (163)
206 TIGR00764 lon_rel lon-related 98.3 6.8E-06 1.5E-10 98.7 13.9 101 534-636 268-391 (608)
207 KOG0745 Putative ATP-dependent 98.3 3E-06 6.5E-11 94.2 9.6 96 430-528 227-331 (564)
208 COG3842 PotA ABC-type spermidi 98.3 1.3E-06 2.8E-11 97.2 6.8 55 408-462 6-64 (352)
209 TIGR02974 phageshock_pspF psp 98.2 6E-06 1.3E-10 92.2 11.8 167 429-614 22-231 (329)
210 COG1134 TagH ABC-type polysacc 98.2 2.2E-06 4.9E-11 89.7 7.7 41 423-463 47-87 (249)
211 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.2 2E-06 4.4E-11 84.5 6.8 77 423-499 20-99 (144)
212 PF01078 Mg_chelatase: Magnesi 98.2 5.5E-07 1.2E-11 93.0 2.8 28 427-454 20-47 (206)
213 COG2607 Predicted ATPase (AAA+ 98.2 1.7E-05 3.8E-10 82.5 13.7 162 428-611 84-276 (287)
214 PRK07399 DNA polymerase III su 98.2 4.6E-06 9.9E-11 92.5 10.2 155 427-603 24-217 (314)
215 KOG1514 Origin recognition com 98.2 2E-05 4.4E-10 92.5 15.5 187 431-634 424-653 (767)
216 COG1126 GlnQ ABC-type polar am 98.2 2.9E-06 6.3E-11 87.2 7.7 55 408-462 3-61 (240)
217 COG1220 HslU ATP-dependent pro 98.2 6.4E-06 1.4E-10 89.3 10.1 84 489-576 251-346 (444)
218 cd03228 ABCC_MRP_Like The MRP 98.2 2.5E-06 5.5E-11 86.0 6.6 39 423-461 22-60 (171)
219 PRK13539 cytochrome c biogenes 98.2 3.2E-06 7E-11 88.0 7.1 40 423-462 22-61 (207)
220 PF13177 DNA_pol3_delta2: DNA 98.2 2.1E-06 4.6E-11 86.1 5.5 117 427-565 17-160 (162)
221 PRK08116 hypothetical protein; 98.2 2E-06 4.3E-11 93.3 5.6 123 429-568 114-251 (268)
222 COG3839 MalK ABC-type sugar tr 98.2 9.2E-07 2E-11 97.9 3.0 57 408-464 4-64 (338)
223 KOG1051 Chaperone HSP104 and r 98.2 2.1E-05 4.6E-10 96.0 14.6 102 428-545 590-712 (898)
224 cd03247 ABCC_cytochrome_bd The 98.1 3.1E-06 6.7E-11 85.9 6.2 40 423-462 22-61 (178)
225 cd03246 ABCC_Protease_Secretio 98.1 5.2E-06 1.1E-10 83.9 7.8 39 423-461 22-60 (173)
226 cd03230 ABC_DR_subfamily_A Thi 98.1 4.3E-06 9.3E-11 84.5 6.8 39 423-461 20-58 (173)
227 cd03214 ABC_Iron-Siderophores_ 98.1 3.6E-06 7.9E-11 85.6 6.1 39 423-461 19-57 (180)
228 TIGR01817 nifA Nif-specific re 98.1 9.4E-06 2E-10 96.6 10.5 180 429-630 219-439 (534)
229 COG2274 SunT ABC-type bacterio 98.1 0.00018 4E-09 87.6 21.6 133 408-546 472-642 (709)
230 PRK11608 pspF phage shock prot 98.1 8.1E-06 1.8E-10 91.1 9.1 133 428-579 28-194 (326)
231 PF00493 MCM: MCM2/3/5 family 98.1 2.6E-06 5.6E-11 95.2 4.8 191 426-636 54-326 (331)
232 PRK11247 ssuB aliphatic sulfon 98.1 6.3E-06 1.4E-10 88.9 7.6 55 408-462 13-71 (257)
233 COG1119 ModF ABC-type molybden 98.1 8.8E-06 1.9E-10 85.3 8.3 49 407-455 31-83 (257)
234 cd03229 ABC_Class3 This class 98.1 3.9E-06 8.4E-11 85.2 5.1 39 423-461 20-58 (178)
235 cd00267 ABC_ATPase ABC (ATP-bi 98.1 4.6E-06 1E-10 82.8 5.4 112 423-548 19-144 (157)
236 COG4559 ABC-type hemin transpo 98.1 1.2E-05 2.7E-10 82.4 8.2 42 423-464 21-62 (259)
237 COG4133 CcmA ABC-type transpor 98.0 1.7E-05 3.7E-10 80.0 8.9 41 423-463 22-62 (209)
238 PRK09183 transposase/IS protei 98.0 6.7E-06 1.5E-10 88.8 6.5 74 426-500 99-176 (259)
239 COG1124 DppF ABC-type dipeptid 98.0 1.2E-05 2.6E-10 84.2 8.0 56 408-463 4-67 (252)
240 PRK06526 transposase; Provisio 98.0 4.6E-06 1E-10 89.7 5.0 72 427-500 96-171 (254)
241 PRK05022 anaerobic nitric oxid 98.0 2.5E-05 5.5E-10 92.3 11.7 169 429-617 210-421 (509)
242 PF06068 TIP49: TIP49 C-termin 98.0 1.8E-05 3.9E-10 87.8 9.5 47 536-585 309-367 (398)
243 TIGR03864 PQQ_ABC_ATP ABC tran 98.0 8.6E-06 1.9E-10 86.5 6.9 40 423-462 21-60 (236)
244 KOG2035 Replication factor C, 98.0 5.9E-05 1.3E-09 80.1 12.8 157 430-605 35-226 (351)
245 KOG0478 DNA replication licens 98.0 3.7E-05 8E-10 89.8 12.2 135 426-576 459-623 (804)
246 cd03293 ABC_NrtD_SsuB_transpor 98.0 7.5E-06 1.6E-10 85.9 6.2 40 423-462 24-63 (220)
247 cd03213 ABCG_EPDR ABCG transpo 98.0 1.1E-05 2.4E-10 83.2 7.3 39 423-461 29-69 (194)
248 cd03223 ABCD_peroxisomal_ALDP 98.0 1.3E-05 2.9E-10 80.5 7.6 40 423-462 21-60 (166)
249 KOG2227 Pre-initiation complex 98.0 5.1E-05 1.1E-09 85.7 12.7 182 424-618 170-381 (529)
250 PF13173 AAA_14: AAA domain 98.0 2E-05 4.4E-10 75.6 8.4 69 430-500 3-73 (128)
251 COG4619 ABC-type uncharacteriz 98.0 1.8E-05 3.8E-10 78.4 7.9 40 423-462 23-62 (223)
252 PRK10636 putative ABC transpor 98.0 1.5E-05 3.2E-10 96.9 8.9 55 409-463 3-61 (638)
253 COG2204 AtoC Response regulato 98.0 1.6E-05 3.4E-10 91.4 8.6 178 430-630 165-385 (464)
254 COG4987 CydC ABC-type transpor 98.0 0.00076 1.6E-08 77.8 21.8 57 408-464 337-399 (573)
255 PRK13541 cytochrome c biogenes 98.0 1.4E-05 3E-10 82.4 7.3 41 422-462 19-59 (195)
256 PRK15424 propionate catabolism 98.0 3.6E-05 7.8E-10 91.0 11.4 98 429-543 242-372 (538)
257 TIGR02868 CydC thiol reductant 98.0 1.3E-05 2.9E-10 95.2 7.9 131 408-545 335-502 (529)
258 PRK11650 ugpC glycerol-3-phosp 98.0 1E-05 2.2E-10 91.4 6.5 55 408-462 4-63 (356)
259 smart00763 AAA_PrkA PrkA AAA d 98.0 2.9E-05 6.3E-10 86.7 9.9 61 518-581 252-329 (361)
260 TIGR03265 PhnT2 putative 2-ami 98.0 1.2E-05 2.6E-10 90.7 7.0 55 408-462 5-63 (353)
261 PRK09544 znuC high-affinity zi 98.0 2.2E-05 4.8E-10 84.4 8.7 56 408-463 5-64 (251)
262 cd03259 ABC_Carb_Solutes_like 97.9 7.4E-06 1.6E-10 85.4 4.7 40 423-462 20-59 (213)
263 cd03269 ABC_putative_ATPase Th 97.9 1.5E-05 3.3E-10 82.9 7.0 41 423-463 20-60 (210)
264 PRK13543 cytochrome c biogenes 97.9 1.8E-05 3.9E-10 82.9 7.5 56 408-463 12-71 (214)
265 cd03265 ABC_DrrA DrrA is the A 97.9 1.6E-05 3.4E-10 83.5 7.1 40 423-462 20-59 (220)
266 PRK11388 DNA-binding transcrip 97.9 4.6E-05 1E-09 92.7 12.2 183 428-633 347-568 (638)
267 cd03226 ABC_cobalt_CbiO_domain 97.9 2.5E-05 5.4E-10 81.1 8.5 40 423-462 20-59 (205)
268 COG1221 PspF Transcriptional r 97.9 2.1E-05 4.6E-10 88.8 8.4 170 429-617 101-310 (403)
269 TIGR02211 LolD_lipo_ex lipopro 97.9 1.7E-05 3.6E-10 83.3 7.2 40 423-462 25-64 (221)
270 PRK08181 transposase; Validate 97.9 9.9E-06 2.1E-10 87.8 5.6 71 428-500 105-179 (269)
271 PF13401 AAA_22: AAA domain; P 97.9 2.7E-05 5.9E-10 74.2 8.0 73 429-501 4-100 (131)
272 COG4525 TauB ABC-type taurine 97.9 2.3E-05 5.1E-10 79.3 7.7 40 423-462 25-64 (259)
273 COG4178 ABC-type uncharacteriz 97.9 0.00058 1.2E-08 80.8 20.3 129 408-545 393-547 (604)
274 TIGR00960 3a0501s02 Type II (G 97.9 1.8E-05 3.9E-10 82.7 7.2 40 423-462 23-62 (216)
275 COG1118 CysA ABC-type sulfate/ 97.9 2E-05 4.4E-10 84.8 7.6 41 423-463 22-62 (345)
276 KOG0058 Peptide exporter, ABC 97.9 0.0013 2.8E-08 78.4 23.1 133 408-546 466-637 (716)
277 COG0606 Predicted ATPase with 97.9 1.4E-05 3.1E-10 90.7 6.6 195 424-634 193-483 (490)
278 PRK11629 lolD lipoprotein tran 97.9 2.3E-05 5.1E-10 83.0 7.9 40 423-462 29-68 (233)
279 PRK09452 potA putrescine/sperm 97.9 1.4E-05 3E-10 90.7 6.5 54 408-461 15-72 (375)
280 TIGR02673 FtsE cell division A 97.9 2.1E-05 4.6E-10 82.0 7.4 40 423-462 22-61 (214)
281 cd03301 ABC_MalK_N The N-termi 97.9 9.5E-06 2E-10 84.6 4.6 40 423-462 20-59 (213)
282 COG0410 LivF ABC-type branched 97.9 2.4E-05 5.3E-10 81.4 7.3 116 408-523 4-151 (237)
283 COG1122 CbiO ABC-type cobalt t 97.9 3.7E-06 8.1E-11 89.2 1.3 40 423-462 24-63 (235)
284 COG1127 Ttg2A ABC-type transpo 97.9 1.6E-05 3.5E-10 83.1 5.8 54 407-460 8-65 (263)
285 cd03231 ABC_CcmA_heme_exporter 97.9 3.1E-05 6.8E-10 80.2 8.1 40 423-462 20-59 (201)
286 PRK13538 cytochrome c biogenes 97.9 1.8E-05 3.9E-10 82.1 6.2 40 423-462 21-60 (204)
287 PRK05917 DNA polymerase III su 97.9 3.8E-05 8.3E-10 83.7 8.9 118 427-566 17-154 (290)
288 cd03238 ABC_UvrA The excision 97.9 2.5E-05 5.4E-10 79.5 7.0 29 423-451 15-43 (176)
289 PRK11432 fbpC ferric transport 97.9 8.4E-06 1.8E-10 91.8 3.9 55 408-462 7-65 (351)
290 PRK10820 DNA-binding transcrip 97.9 6.6E-05 1.4E-09 89.0 11.6 178 429-629 227-447 (520)
291 PRK13648 cbiO cobalt transport 97.9 2.4E-05 5.2E-10 84.8 7.3 55 408-462 8-68 (269)
292 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.9 1.7E-05 3.7E-10 83.6 6.0 53 410-462 25-81 (224)
293 KOG2680 DNA helicase TIP49, TB 97.9 0.00014 3.1E-09 77.8 12.6 90 544-636 339-429 (454)
294 PRK11248 tauB taurine transpor 97.9 2E-05 4.4E-10 84.8 6.6 40 423-462 21-60 (255)
295 PRK13635 cbiO cobalt transport 97.9 2.3E-05 4.9E-10 85.6 7.1 54 408-461 6-65 (279)
296 PRK11176 lipid transporter ATP 97.9 2.2E-05 4.7E-10 94.4 7.5 56 408-463 342-403 (582)
297 TIGR03797 NHPM_micro_ABC2 NHPM 97.9 2E-05 4.4E-10 96.6 7.3 56 408-463 452-513 (686)
298 TIGR02314 ABC_MetN D-methionin 97.9 1.9E-05 4.1E-10 88.7 6.4 39 423-461 25-63 (343)
299 PRK11147 ABC transporter ATPas 97.9 2.6E-05 5.6E-10 94.7 8.1 55 408-462 4-62 (635)
300 TIGR03796 NHPM_micro_ABC1 NHPM 97.9 2.6E-05 5.6E-10 96.1 8.1 56 408-463 478-539 (710)
301 PRK11607 potG putrescine trans 97.9 2.1E-05 4.5E-10 89.5 6.7 54 408-461 20-77 (377)
302 KOG0480 DNA replication licens 97.9 3.8E-05 8.2E-10 89.1 8.6 197 424-638 373-645 (764)
303 TIGR03258 PhnT 2-aminoethylpho 97.9 2.3E-05 5E-10 88.6 6.9 55 408-462 6-66 (362)
304 PRK11153 metN DL-methionine tr 97.9 2.1E-05 4.6E-10 88.4 6.6 40 423-462 25-64 (343)
305 TIGR03608 L_ocin_972_ABC putat 97.9 3.4E-05 7.4E-10 79.9 7.7 40 423-462 18-57 (206)
306 PRK13537 nodulation ABC transp 97.9 1.3E-05 2.9E-10 88.6 4.8 55 408-462 8-66 (306)
307 cd03232 ABC_PDR_domain2 The pl 97.9 2.8E-05 6E-10 80.0 6.9 38 423-460 27-66 (192)
308 cd03296 ABC_CysA_sulfate_impor 97.9 3.2E-05 6.8E-10 82.3 7.5 40 423-462 22-61 (239)
309 COG1131 CcmA ABC-type multidru 97.9 6.3E-05 1.4E-09 82.7 10.1 56 408-463 5-65 (293)
310 cd03235 ABC_Metallic_Cations A 97.8 3.2E-05 7E-10 80.6 7.4 41 423-463 19-59 (213)
311 COG3829 RocR Transcriptional r 97.8 3.3E-05 7.2E-10 88.9 7.9 180 427-630 266-491 (560)
312 COG2884 FtsE Predicted ATPase 97.8 1.6E-05 3.4E-10 80.4 4.7 55 410-464 4-63 (223)
313 PRK13409 putative ATPase RIL; 97.8 2.8E-05 6.1E-10 93.4 7.7 56 407-462 340-398 (590)
314 TIGR02329 propionate_PrpR prop 97.8 5.8E-05 1.3E-09 89.2 10.2 184 429-631 235-465 (526)
315 cd03215 ABC_Carb_Monos_II This 97.8 1.5E-05 3.2E-10 81.3 4.5 53 408-462 5-59 (182)
316 COG4586 ABC-type uncharacteriz 97.8 2.7E-05 5.8E-10 82.6 6.4 42 423-464 44-85 (325)
317 KOG0990 Replication factor C, 97.8 6.6E-05 1.4E-09 81.3 9.4 131 431-583 64-207 (360)
318 TIGR01288 nodI ATP-binding ABC 97.8 1.4E-05 3E-10 88.2 4.4 55 408-462 5-63 (303)
319 PRK12377 putative replication 97.8 4E-05 8.6E-10 82.1 7.7 70 429-500 101-175 (248)
320 KOG0057 Mitochondrial Fe/S clu 97.8 4.8E-05 1E-09 87.4 8.7 114 408-523 352-502 (591)
321 COG1241 MCM2 Predicted ATPase 97.8 2.3E-05 5E-10 93.7 6.4 132 426-576 316-480 (682)
322 cd03217 ABC_FeS_Assembly ABC-t 97.8 4E-05 8.7E-10 79.4 7.5 38 423-460 20-59 (200)
323 cd03225 ABC_cobalt_CbiO_domain 97.8 1.9E-05 4.1E-10 82.2 5.0 40 423-462 21-60 (211)
324 PRK10908 cell division protein 97.8 3.9E-05 8.4E-10 80.6 7.3 40 423-462 22-61 (222)
325 COG1136 SalX ABC-type antimicr 97.8 2.8E-05 6E-10 81.7 6.0 39 423-461 25-63 (226)
326 COG3840 ThiQ ABC-type thiamine 97.8 4.3E-05 9.4E-10 76.7 7.0 53 410-462 4-58 (231)
327 PRK13536 nodulation factor exp 97.8 6.3E-05 1.4E-09 84.5 9.1 56 407-462 41-100 (340)
328 PRK15429 formate hydrogenlyase 97.8 0.00016 3.4E-09 88.8 13.2 102 428-543 398-520 (686)
329 PRK10575 iron-hydroxamate tran 97.8 4.6E-05 9.9E-10 82.5 7.7 55 408-462 12-70 (265)
330 PRK11000 maltose/maltodextrin 97.8 1.3E-05 2.7E-10 91.1 3.4 55 408-462 4-62 (369)
331 TIGR03375 type_I_sec_LssB type 97.8 4.6E-05 9.9E-10 93.6 8.4 115 408-523 464-616 (694)
332 TIGR02203 MsbA_lipidA lipid A 97.8 4E-05 8.6E-10 91.9 7.7 56 408-463 331-392 (571)
333 TIGR01189 ccmA heme ABC export 97.8 8.9E-05 1.9E-09 76.5 9.3 40 423-462 20-59 (198)
334 PRK11819 putative ABC transpor 97.8 5E-05 1.1E-09 90.9 8.4 55 408-462 7-66 (556)
335 COG3638 ABC-type phosphate/pho 97.8 6.4E-05 1.4E-09 78.5 7.9 55 408-462 4-63 (258)
336 PF00158 Sigma54_activat: Sigm 97.8 3.2E-05 7E-10 78.1 5.7 99 428-543 21-143 (168)
337 cd03237 ABC_RNaseL_inhibitor_d 97.8 4.8E-05 1E-09 81.5 7.3 40 424-463 20-59 (246)
338 PF01637 Arch_ATPase: Archaeal 97.8 5.2E-05 1.1E-09 78.9 7.4 160 429-600 20-227 (234)
339 PF01695 IstB_IS21: IstB-like 97.8 2.5E-05 5.4E-10 79.7 4.8 70 427-498 45-118 (178)
340 cd01120 RecA-like_NTPases RecA 97.8 0.00013 2.9E-09 71.3 9.8 72 432-503 2-100 (165)
341 PRK07952 DNA replication prote 97.7 3E-05 6.6E-10 82.8 5.3 69 430-500 100-174 (244)
342 TIGR01193 bacteriocin_ABC ABC- 97.7 5.4E-05 1.2E-09 93.2 8.3 131 408-544 474-642 (708)
343 COG1125 OpuBA ABC-type proline 97.7 3.4E-05 7.5E-10 81.1 5.5 53 409-461 3-59 (309)
344 PRK15112 antimicrobial peptide 97.7 8.6E-05 1.9E-09 80.5 8.8 40 423-462 33-72 (267)
345 TIGR02915 PEP_resp_reg putativ 97.7 9.5E-05 2E-09 85.9 9.7 180 430-629 163-382 (445)
346 cd03254 ABCC_Glucan_exporter_l 97.7 0.00011 2.4E-09 77.4 9.4 40 423-462 23-62 (229)
347 PRK11160 cysteine/glutathione 97.7 7.3E-05 1.6E-09 89.8 8.9 56 408-463 339-400 (574)
348 PRK13657 cyclic beta-1,2-gluca 97.7 5.1E-05 1.1E-09 91.4 7.4 55 408-462 335-394 (588)
349 PRK09536 btuD corrinoid ABC tr 97.7 5.5E-05 1.2E-09 86.7 7.1 55 408-462 4-62 (402)
350 COG4988 CydD ABC-type transpor 97.7 8.2E-05 1.8E-09 86.5 8.5 57 408-464 321-382 (559)
351 COG1484 DnaC DNA replication p 97.7 4.1E-05 8.9E-10 82.4 5.7 71 428-500 104-179 (254)
352 PRK10851 sulfate/thiosulfate t 97.7 4.4E-05 9.6E-10 86.1 6.2 52 410-461 5-60 (353)
353 TIGR03522 GldA_ABC_ATP gliding 97.7 2.5E-05 5.4E-10 86.2 4.1 53 410-462 5-61 (301)
354 COG4555 NatA ABC-type Na+ tran 97.7 6.6E-05 1.4E-09 76.6 6.6 55 409-463 3-62 (245)
355 TIGR01842 type_I_sec_PrtD type 97.7 0.0025 5.4E-08 76.2 21.1 55 408-462 317-377 (544)
356 TIGR02204 MsbA_rel ABC transpo 97.7 6.3E-05 1.4E-09 90.3 7.5 56 408-463 338-400 (576)
357 PF05729 NACHT: NACHT domain 97.7 0.00021 4.5E-09 70.5 9.9 139 431-581 2-165 (166)
358 TIGR02857 CydD thiol reductant 97.7 7.4E-05 1.6E-09 88.8 7.8 56 408-463 321-382 (529)
359 TIGR00958 3a01208 Conjugate Tr 97.7 7.5E-05 1.6E-09 92.0 8.0 56 408-463 479-541 (711)
360 cd03250 ABCC_MRP_domain1 Domai 97.7 0.00012 2.7E-09 75.8 8.5 41 423-463 25-65 (204)
361 PRK07276 DNA polymerase III su 97.7 0.00032 6.8E-09 76.8 11.7 128 427-576 22-172 (290)
362 KOG0062 ATPase component of AB 97.7 7.8E-05 1.7E-09 85.0 7.0 130 410-546 83-231 (582)
363 PF03215 Rad17: Rad17 cell cyc 97.7 0.00024 5.3E-09 83.7 11.4 169 431-617 47-269 (519)
364 PRK11174 cysteine/glutathione 97.6 6.3E-05 1.4E-09 90.6 6.5 55 408-463 350-409 (588)
365 PRK08939 primosomal protein Dn 97.6 7.2E-05 1.6E-09 82.7 6.5 70 428-499 155-228 (306)
366 PRK13650 cbiO cobalt transport 97.6 4.4E-05 9.5E-10 83.3 4.7 40 423-462 27-66 (279)
367 PRK06835 DNA replication prote 97.6 4.1E-05 8.8E-10 85.4 4.3 70 429-500 183-258 (329)
368 cd03245 ABCC_bacteriocin_expor 97.6 0.00015 3.3E-09 75.9 8.5 40 423-462 24-63 (220)
369 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.6 4.4E-05 9.5E-10 79.9 4.3 40 423-462 24-63 (218)
370 PRK15064 ABC transporter ATP-b 97.6 6.6E-05 1.4E-09 89.3 6.3 53 410-462 4-60 (530)
371 PRK11144 modC molybdate transp 97.6 0.0001 2.2E-09 83.2 7.5 40 423-462 18-57 (352)
372 PRK06921 hypothetical protein; 97.6 5.4E-05 1.2E-09 82.1 4.9 68 428-498 116-187 (266)
373 TIGR01188 drrA daunorubicin re 97.6 5E-05 1.1E-09 83.8 4.8 40 423-462 13-52 (302)
374 cd03283 ABC_MutS-like MutS-lik 97.6 0.00016 3.6E-09 75.0 8.2 31 423-453 19-49 (199)
375 cd03233 ABC_PDR_domain1 The pl 97.6 4.6E-05 1E-09 79.1 4.0 40 423-462 27-69 (202)
376 COG3267 ExeA Type II secretory 97.6 0.0012 2.6E-08 69.9 14.4 191 426-630 47-267 (269)
377 TIGR01846 type_I_sec_HlyB type 97.6 0.00012 2.5E-09 90.1 8.0 56 408-463 456-517 (694)
378 PRK15439 autoinducer 2 ABC tra 97.6 0.00012 2.6E-09 86.8 7.8 55 408-462 12-70 (510)
379 cd03261 ABC_Org_Solvent_Resist 97.6 5.4E-05 1.2E-09 80.3 4.2 41 423-463 20-60 (235)
380 TIGR01192 chvA glucan exporter 97.6 0.00012 2.6E-09 88.2 7.5 55 408-462 335-394 (585)
381 PRK13640 cbiO cobalt transport 97.6 5E-05 1.1E-09 83.0 3.9 35 423-457 27-61 (282)
382 cd03258 ABC_MetN_methionine_tr 97.6 6E-05 1.3E-09 79.8 4.4 41 423-463 25-65 (233)
383 PRK10790 putative multidrug tr 97.6 0.00012 2.6E-09 88.3 7.5 56 408-463 341-401 (592)
384 TIGR01818 ntrC nitrogen regula 97.6 0.00015 3.2E-09 84.6 8.1 185 430-633 158-381 (463)
385 COG4608 AppF ABC-type oligopep 97.6 0.00011 2.4E-09 78.5 6.2 109 423-544 33-170 (268)
386 PRK11022 dppD dipeptide transp 97.6 0.00011 2.3E-09 82.2 6.4 32 423-454 27-58 (326)
387 PRK10789 putative multidrug tr 97.6 0.00015 3.2E-09 87.1 7.9 55 408-462 314-374 (569)
388 cd03262 ABC_HisP_GlnQ_permease 97.6 6.1E-05 1.3E-09 78.5 4.0 41 423-463 20-60 (213)
389 PRK11361 acetoacetate metaboli 97.5 0.00028 6E-09 82.2 9.8 179 430-631 167-388 (457)
390 PRK09700 D-allose transporter 97.5 0.00013 2.8E-09 86.4 7.2 55 408-462 6-64 (510)
391 PRK10247 putative ABC transpor 97.5 7.2E-05 1.6E-09 78.9 4.5 56 408-463 8-67 (225)
392 TIGR01186 proV glycine betaine 97.5 0.00011 2.4E-09 83.1 6.2 39 423-461 13-51 (363)
393 TIGR03410 urea_trans_UrtE urea 97.5 6.4E-05 1.4E-09 79.4 4.0 41 423-463 20-60 (230)
394 PRK11831 putative ABC transpor 97.5 7.6E-05 1.6E-09 81.0 4.6 56 408-463 8-67 (269)
395 PRK05818 DNA polymerase III su 97.5 0.00029 6.2E-09 75.5 8.8 121 427-566 5-147 (261)
396 PF03969 AFG1_ATPase: AFG1-lik 97.5 0.00012 2.5E-09 82.8 6.2 140 426-593 59-207 (362)
397 cd03257 ABC_NikE_OppD_transpor 97.5 7.1E-05 1.5E-09 78.8 4.2 41 423-463 25-65 (228)
398 cd03224 ABC_TM1139_LivF_branch 97.5 6.6E-05 1.4E-09 78.7 3.9 41 423-463 20-60 (222)
399 COG4167 SapF ABC-type antimicr 97.5 0.00022 4.9E-09 71.5 7.2 38 423-460 33-70 (267)
400 TIGR03719 ABC_ABC_ChvD ATP-bin 97.5 0.00014 3E-09 87.1 6.9 55 408-462 5-64 (552)
401 PRK10584 putative ABC transpor 97.5 8E-05 1.7E-09 78.5 4.4 40 423-462 30-69 (228)
402 cd03243 ABC_MutS_homologs The 97.5 0.00014 3E-09 75.5 6.0 29 423-451 23-51 (202)
403 TIGR02142 modC_ABC molybdenum 97.5 0.00013 2.9E-09 82.3 6.3 39 423-461 17-55 (354)
404 cd03263 ABC_subfamily_A The AB 97.5 8E-05 1.7E-09 78.0 4.2 40 423-462 22-61 (220)
405 PRK13549 xylose transporter AT 97.5 0.0002 4.2E-09 84.8 7.9 55 408-462 6-66 (506)
406 cd03218 ABC_YhbG The ABC trans 97.5 7.6E-05 1.7E-09 78.8 4.0 40 423-462 20-59 (232)
407 PRK10070 glycine betaine trans 97.5 0.00011 2.3E-09 84.2 5.5 40 423-462 48-87 (400)
408 PRK10895 lipopolysaccharide AB 97.5 8.4E-05 1.8E-09 79.1 4.3 55 409-463 5-63 (241)
409 cd03219 ABC_Mj1267_LivG_branch 97.5 7.8E-05 1.7E-09 79.0 4.1 40 423-462 20-59 (236)
410 PRK13546 teichoic acids export 97.5 0.00018 3.8E-09 78.0 6.9 41 423-463 44-84 (264)
411 PRK10923 glnG nitrogen regulat 97.5 0.00043 9.2E-09 81.0 10.6 182 429-632 161-384 (469)
412 PLN03073 ABC transporter F fam 97.5 0.00097 2.1E-08 81.9 14.0 46 408-453 178-227 (718)
413 TIGR02323 CP_lyasePhnK phospho 97.5 8.3E-05 1.8E-09 79.7 4.3 56 408-463 4-63 (253)
414 PRK10771 thiQ thiamine transpo 97.5 7.6E-05 1.7E-09 79.0 3.9 41 422-462 18-58 (232)
415 TIGR01277 thiQ thiamine ABC tr 97.5 8.5E-05 1.8E-09 77.6 4.2 40 423-462 18-57 (213)
416 cd03268 ABC_BcrA_bacitracin_re 97.5 8.7E-05 1.9E-09 77.1 4.1 41 423-463 20-60 (208)
417 PRK13540 cytochrome c biogenes 97.5 9.4E-05 2E-09 76.5 4.2 40 423-462 21-60 (200)
418 cd03260 ABC_PstB_phosphate_tra 97.5 9.8E-05 2.1E-09 77.8 4.4 40 423-462 20-64 (227)
419 PRK11264 putative amino-acid A 97.5 0.0001 2.2E-09 78.8 4.6 56 408-463 4-63 (250)
420 PRK11300 livG leucine/isoleuci 97.5 9.7E-05 2.1E-09 79.2 4.4 56 408-463 6-65 (255)
421 TIGR02315 ABC_phnC phosphonate 97.5 9.9E-05 2.1E-09 78.6 4.4 40 423-462 22-61 (243)
422 cd03266 ABC_NatA_sodium_export 97.5 9.2E-05 2E-09 77.4 4.1 40 423-462 25-64 (218)
423 PRK11288 araG L-arabinose tran 97.5 0.00025 5.4E-09 83.8 8.2 55 408-462 5-63 (501)
424 PRK10938 putative molybdenum t 97.5 0.00023 5.1E-09 83.8 7.7 55 408-462 4-62 (490)
425 PRK11701 phnK phosphonate C-P 97.5 0.00011 2.3E-09 79.3 4.5 56 408-463 7-66 (258)
426 cd03256 ABC_PhnC_transporter A 97.5 9.9E-05 2.1E-09 78.4 4.2 40 423-462 21-60 (241)
427 cd03298 ABC_ThiQ_thiamine_tran 97.5 0.0001 2.2E-09 76.8 4.1 41 422-462 17-57 (211)
428 PRK15115 response regulator Gl 97.4 0.00046 1E-08 80.1 10.0 180 430-632 158-380 (444)
429 COG4181 Predicted ABC-type tra 97.4 0.00033 7.1E-09 69.8 7.3 39 423-461 30-68 (228)
430 cd03292 ABC_FtsE_transporter F 97.4 0.00011 2.3E-09 76.6 4.2 41 423-463 21-61 (214)
431 PRK13638 cbiO cobalt transport 97.4 9.8E-05 2.1E-09 80.2 4.0 40 423-462 21-60 (271)
432 PRK10982 galactose/methyl gala 97.4 0.00029 6.2E-09 83.1 8.2 40 423-462 18-57 (491)
433 COG1135 AbcC ABC-type metal io 97.4 0.0002 4.3E-09 77.5 6.1 38 423-460 26-63 (339)
434 PRK10522 multidrug transporter 97.4 0.00036 7.8E-09 83.4 9.1 56 408-463 323-383 (547)
435 COG1132 MdlB ABC-type multidru 97.4 0.00022 4.7E-09 85.6 7.2 55 408-462 329-388 (567)
436 TIGR03411 urea_trans_UrtD urea 97.4 0.00011 2.4E-09 78.2 4.1 41 423-463 22-62 (242)
437 TIGR03005 ectoine_ehuA ectoine 97.4 0.00011 2.4E-09 78.7 4.2 41 423-463 20-60 (252)
438 PRK11124 artP arginine transpo 97.4 0.00012 2.6E-09 78.0 4.3 41 423-463 22-62 (242)
439 PRK14250 phosphate ABC transpo 97.4 0.00011 2.4E-09 78.3 4.1 41 423-463 23-63 (241)
440 KOG0482 DNA replication licens 97.4 0.00065 1.4E-08 77.2 10.2 196 424-635 370-637 (721)
441 TIGR02237 recomb_radB DNA repa 97.4 0.00044 9.5E-09 71.9 8.4 116 424-542 7-148 (209)
442 TIGR03415 ABC_choXWV_ATP choli 97.4 0.00018 3.9E-09 81.8 5.9 40 423-462 44-83 (382)
443 COG4604 CeuD ABC-type enteroch 97.4 0.00034 7.3E-09 71.3 7.0 55 410-464 4-62 (252)
444 PRK11614 livF leucine/isoleuci 97.4 0.00012 2.6E-09 77.7 4.2 55 408-462 6-64 (237)
445 TIGR03771 anch_rpt_ABC anchore 97.4 0.00037 7.9E-09 73.5 7.7 39 425-463 2-40 (223)
446 TIGR01978 sufC FeS assembly AT 97.4 0.00013 2.7E-09 77.7 4.2 40 423-462 20-61 (243)
447 PRK10253 iron-enterobactin tra 97.4 0.00012 2.5E-09 79.3 4.0 55 408-462 8-66 (265)
448 cd03264 ABC_drug_resistance_li 97.4 0.00011 2.5E-09 76.4 3.8 40 423-463 20-59 (211)
449 PRK09493 glnQ glutamine ABC tr 97.4 0.00013 2.9E-09 77.5 4.4 41 423-463 21-61 (240)
450 COG3604 FhlA Transcriptional r 97.4 0.00064 1.4E-08 77.7 9.8 166 430-616 247-456 (550)
451 cd03281 ABC_MSH5_euk MutS5 hom 97.4 0.00026 5.6E-09 74.3 6.3 22 430-451 30-51 (213)
452 PRK13545 tagH teichoic acids e 97.4 0.00041 8.8E-09 81.3 8.5 41 423-463 44-84 (549)
453 cd03280 ABC_MutS2 MutS2 homolo 97.4 0.0003 6.5E-09 72.9 6.8 28 423-450 21-49 (200)
454 cd03295 ABC_OpuCA_Osmoprotecti 97.4 0.00013 2.8E-09 77.8 4.0 41 423-463 21-61 (242)
455 cd03289 ABCC_CFTR2 The CFTR su 97.4 0.00047 1E-08 75.2 8.4 39 423-462 24-62 (275)
456 TIGR03740 galliderm_ABC gallid 97.4 0.00014 3.1E-09 76.4 4.3 40 423-462 20-59 (223)
457 PF00005 ABC_tran: ABC transpo 97.4 0.00012 2.6E-09 70.5 3.3 41 423-463 5-45 (137)
458 PRK14242 phosphate transporter 97.4 0.00016 3.5E-09 77.5 4.7 55 408-462 7-70 (253)
459 PRK10619 histidine/lysine/argi 97.4 0.00017 3.7E-09 77.6 4.9 56 408-463 6-65 (257)
460 PRK13548 hmuV hemin importer A 97.4 0.00013 2.8E-09 78.6 3.9 40 423-462 22-61 (258)
461 cd01130 VirB11-like_ATPase Typ 97.4 0.00018 4E-09 73.6 4.8 77 423-499 19-111 (186)
462 TIGR02633 xylG D-xylose ABC tr 97.4 0.00036 7.9E-09 82.4 7.8 53 410-462 4-62 (500)
463 PF14532 Sigma54_activ_2: Sigm 97.4 8.5E-05 1.8E-09 72.3 2.0 85 429-542 21-108 (138)
464 COG4107 PhnK ABC-type phosphon 97.4 0.00039 8.5E-09 69.3 6.6 54 407-460 6-63 (258)
465 TIGR02858 spore_III_AA stage I 97.3 0.00039 8.5E-09 75.5 7.3 68 430-497 112-203 (270)
466 TIGR01194 cyc_pep_trnsptr cycl 97.3 0.00046 9.9E-09 82.7 8.5 56 408-463 338-402 (555)
467 PRK11231 fecE iron-dicitrate t 97.3 0.00015 3.3E-09 77.9 4.1 53 410-462 5-61 (255)
468 cd03248 ABCC_TAP TAP, the Tran 97.3 0.00016 3.6E-09 76.0 4.1 55 408-462 12-73 (226)
469 PRK13645 cbiO cobalt transport 97.3 0.00015 3.2E-09 79.6 3.9 40 423-462 31-70 (289)
470 TIGR03873 F420-0_ABC_ATP propo 97.3 0.00015 3.2E-09 78.0 3.8 40 423-462 21-60 (256)
471 TIGR00954 3a01203 Peroxysomal 97.3 0.00048 1E-08 84.1 8.7 55 408-462 452-511 (659)
472 PRK13649 cbiO cobalt transport 97.3 0.00016 3.5E-09 78.8 4.2 41 423-463 27-67 (280)
473 PRK10365 transcriptional regul 97.3 0.00063 1.4E-08 78.8 9.3 183 429-631 162-384 (441)
474 cd03251 ABCC_MsbA MsbA is an e 97.3 0.00016 3.5E-09 76.5 4.0 40 423-462 22-61 (234)
475 TIGR03269 met_CoM_red_A2 methy 97.3 0.00043 9.4E-09 82.2 7.8 55 408-462 280-343 (520)
476 PRK13547 hmuV hemin importer A 97.3 0.00018 3.8E-09 78.4 4.1 34 423-456 21-54 (272)
477 TIGR00972 3a0107s01c2 phosphat 97.3 0.00019 4.2E-09 76.7 4.3 40 423-462 21-65 (247)
478 PRK14248 phosphate ABC transpo 97.3 0.00022 4.7E-09 77.3 4.8 55 408-462 22-85 (268)
479 TIGR02788 VirB11 P-type DNA tr 97.3 0.00053 1.1E-08 76.0 7.8 77 423-499 138-229 (308)
480 PRK13765 ATP-dependent proteas 97.3 0.00061 1.3E-08 82.1 8.8 99 534-634 277-398 (637)
481 PRK13641 cbiO cobalt transport 97.3 0.00018 3.9E-09 78.8 4.0 41 423-463 27-67 (287)
482 TIGR01166 cbiO cobalt transpor 97.3 0.0002 4.4E-09 73.4 4.1 40 423-462 12-51 (190)
483 cd03287 ABC_MSH3_euk MutS3 hom 97.3 0.00024 5.2E-09 75.0 4.8 29 423-451 25-53 (222)
484 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.3 0.00018 3.9E-09 76.4 3.8 41 423-463 23-63 (238)
485 PRK11288 araG L-arabinose tran 97.3 0.0004 8.8E-09 82.1 7.1 40 423-462 273-312 (501)
486 TIGR02324 CP_lyasePhnL phospho 97.3 0.00019 4.1E-09 75.5 3.9 40 423-462 28-67 (224)
487 PRK15056 manganese/iron transp 97.3 0.0002 4.4E-09 77.8 4.2 55 408-462 7-66 (272)
488 COG0411 LivG ABC-type branched 97.3 7.8E-05 1.7E-09 78.3 0.9 56 408-463 5-64 (250)
489 KOG0927 Predicted transporter 97.3 0.00076 1.7E-08 77.6 8.8 46 409-454 77-126 (614)
490 cd03253 ABCC_ATM1_transporter 97.3 0.0002 4.3E-09 75.9 3.9 40 423-462 21-60 (236)
491 cd03300 ABC_PotA_N PotA is an 97.3 0.00023 4.9E-09 75.4 4.4 40 423-462 20-59 (232)
492 PRK14254 phosphate ABC transpo 97.3 0.00025 5.4E-09 77.7 4.8 60 403-462 35-103 (285)
493 PRK14267 phosphate ABC transpo 97.3 0.00022 4.8E-09 76.4 4.2 55 408-462 5-68 (253)
494 TIGR02769 nickel_nikE nickel i 97.3 0.00022 4.7E-09 77.2 4.1 41 423-463 31-71 (265)
495 PRK14274 phosphate ABC transpo 97.3 0.00027 5.9E-09 76.1 4.8 47 408-454 13-63 (259)
496 PRK14235 phosphate transporter 97.3 0.00028 6.1E-09 76.5 4.9 55 408-462 20-83 (267)
497 cd03244 ABCC_MRP_domain2 Domai 97.3 0.00022 4.8E-09 74.8 4.0 40 423-462 24-63 (221)
498 PRK10744 pstB phosphate transp 97.3 0.00025 5.5E-09 76.4 4.5 55 408-462 14-77 (260)
499 PRK14262 phosphate ABC transpo 97.3 0.00025 5.5E-09 75.9 4.5 55 408-462 4-67 (250)
500 PRK14238 phosphate transporter 97.3 0.00026 5.7E-09 76.9 4.6 55 408-462 25-88 (271)
No 1
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-76 Score=645.47 Aligned_cols=399 Identities=40% Similarity=0.565 Sum_probs=370.0
Q ss_pred cccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHH
Q 002961 420 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 420 ~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~ 499 (862)
.|.++|-+.|.||+|+||||||||.|++++||+.+.||++.+.++|-..|+|++..+++.+|..++..+|||+||||||+
T Consensus 328 kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 328 KFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred HhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHH
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l 579 (862)
+++.+.. +...+.++++|+||.+||+|..+.+|+||++||.|+.||++|+||||||++|.+|.||...|.+||..|+
T Consensus 408 vG~kR~~---~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 408 VGGKRNP---SDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred hcccCCc---cHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 9887643 4455999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHhccccc-cccccccchhHHHHHH
Q 002961 580 RKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLD-RKERSSETWRQVAINE 658 (862)
Q Consensus 580 ~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~~~~~-~~~~~~~~~r~vA~hE 658 (862)
.+.....++|+.-||+-|.||+|+||+|++|.|++.|..++...+|+.|++.|-+....|.-. ..-.+++.++..||||
T Consensus 485 ~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE 564 (752)
T KOG0734|consen 485 SKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHE 564 (752)
T ss_pred hcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhhheeecccccccccChhhhhhhhhhc
Confidence 999999999999999999999999999999999999999999999999999998865543221 1233477788999999
Q ss_pred HHHHHHHHhCCCCCccceEEEecCCCCcccceecccchhhhhhccccHHHHHHHHHHhhChhhHHHhhcCCCCccccccc
Q 002961 659 AAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAE 738 (862)
Q Consensus 659 aGHAlva~ll~~~~~i~~VTI~pr~g~~lG~t~~~~~e~~~~~~~~Tr~~l~~~I~v~LAGraAEel~fG~~~~stga~~ 738 (862)
+|||+|+.++.+..|++++||.|| |.++|+|.+.|+.+ ...+||.+++.++.||||||+|||++||.|.+|+||++
T Consensus 565 ~GHAivA~yTk~A~PlhKaTImPR-G~sLG~t~~LPe~D---~~~~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAss 640 (752)
T KOG0734|consen 565 GGHAIVALYTKGAMPLHKATIMPR-GPSLGHTSQLPEKD---RYSITKAQLLARLDVCMGGRVAEELIFGTDKITSGASS 640 (752)
T ss_pred cCceEEEeecCCCccccceeeccC-CccccceeecCccc---hhhHHHHHHHHHHHHhhcchHHHHHhccCCcccccccc
Confidence 999999999999999999999999 99999999999876 67899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH-HcCCCCC--CCCCc-----ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 002961 739 TADNARSAARTFV-LGGLSDK--HFGLS-----NFWVADRINEIDTEALRILNLCYERAKEILQRNRNLLDAVVNELVEK 810 (862)
Q Consensus 739 Dl~~At~iA~~mv-~~Gm~~~--~~~~~-----~~~~~~~~~~id~ev~~iL~~a~~rA~~iL~~~r~~l~~la~~LLek 810 (862)
|+++||.+|+.|| .||||+. +...+ .-..+++...||.||.++|+++|+||+.||+.|...+++||++||++
T Consensus 641 Dl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~~~s~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleY 720 (752)
T KOG0734|consen 641 DLDQATKLARRMVTKFGMSDKVGPVTLSAEDNSSSLSPRTQELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEY 720 (752)
T ss_pred hHHHHHHHHHHHHHHcCccccccceeeeccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 9999984 22211 12456677889999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHhhc
Q 002961 811 KSLTKQEFFHLVELH 825 (862)
Q Consensus 811 etL~~~ei~~il~~~ 825 (862)
|||+++||++++...
T Consensus 721 ETL~A~eik~vl~g~ 735 (752)
T KOG0734|consen 721 ETLDAKEIKRVLKGK 735 (752)
T ss_pred hcCCHHHHHHHHhcc
Confidence 999999999999755
No 2
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-68 Score=619.02 Aligned_cols=412 Identities=46% Similarity=0.676 Sum_probs=380.1
Q ss_pred cccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHH
Q 002961 420 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 420 ~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~ 499 (862)
.|.++|.++|+|++|+||||||||.|||++||+.+.||+.++.++|+..++|++..+++.+|..++.+.|||+|+||||+
T Consensus 335 ~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida 414 (774)
T KOG0731|consen 335 QYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDA 414 (774)
T ss_pred HHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEeccccc
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcc-CcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHH
Q 002961 500 VGRERG-LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH 578 (862)
Q Consensus 500 l~~~~~-~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~ 578 (862)
++..++ .....++.....++|+||.+||++....+|+|+++||+++.||++|+||||||++|+++.|+...|.+|++.|
T Consensus 415 ~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h 494 (774)
T KOG0731|consen 415 VGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVH 494 (774)
T ss_pred ccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHH
Confidence 998884 2344677888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHhcccc-ccccccccchhHHHH
Q 002961 579 ARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGML-DRKERSSETWRQVAI 656 (862)
Q Consensus 579 l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~~~~-~~~~~~~~~~r~vA~ 656 (862)
++..++. +++++..+|..|+||+|+||.++|++|++.|.+.+...|+..|+..|+++...|+. +....+.++++.+|+
T Consensus 495 ~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~ 574 (774)
T KOG0731|consen 495 LRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAY 574 (774)
T ss_pred hhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhccccccchhcCHhhhhhhhh
Confidence 9999885 88999999999999999999999999999999999999999999999997777643 345667888999999
Q ss_pred HHHHHHHHHHhCCCCCccceEEEecCCCCcccceecccchhhhhhccccHHHHHHHHHHhhChhhHHHhhcCCCCccccc
Q 002961 657 NEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIW 736 (862)
Q Consensus 657 hEaGHAlva~ll~~~~~i~~VTI~pr~g~~lG~t~~~~~e~~~~~~~~Tr~~l~~~I~v~LAGraAEel~fG~~~~stga 736 (862)
||||||+++|++++.+++.+|||.| |+++||++|.|.++ +++|+++|+++|+++|||||||+++|| +++||||
T Consensus 575 ~eagha~~g~~l~~~dpl~kvsIiP--GqalG~a~~~P~~~----~l~sk~ql~~rm~m~LGGRaAEev~fg-~~iTtga 647 (774)
T KOG0731|consen 575 HEAGHAVVGWLLEHADPLLKVSIIP--GQALGYAQYLPTDD----YLLSKEQLFDRMVMALGGRAAEEVVFG-SEITTGA 647 (774)
T ss_pred hhccchhhhccccccCcceeEEecc--CCccceEEECCccc----ccccHHHHHHHHHHHhCcchhhheecC-CccCchh
Confidence 9999999999999999999999999 45999999999865 889999999999999999999999999 7899999
Q ss_pred cchHHHHHHHHHHHH-HcCCCCC--CCC--------C--cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002961 737 AETADNARSAARTFV-LGGLSDK--HFG--------L--SNFWVADRINEIDTEALRILNLCYERAKEILQRNRNLLDAV 803 (862)
Q Consensus 737 ~~Dl~~At~iA~~mv-~~Gm~~~--~~~--------~--~~~~~~~~~~~id~ev~~iL~~a~~rA~~iL~~~r~~l~~l 803 (862)
++|++++|.+|+.|| .|||++. +++ . ...|+..+...||.+|++|++.||++|.++|.+|++.++.|
T Consensus 648 ~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~~~~~~~~~p~s~~~~~~Id~ev~~lv~~ay~~~~~ll~~n~~~l~~i 727 (774)
T KOG0731|consen 648 QDDLEKVTKIARAMVASFGMSEKIGPISFQMLLPGDESFRKPYSEKTAQLIDTEVRRLVQKAYERTKELLRTNRDKLDKI 727 (774)
T ss_pred hccHHHHHHHHHHHHHHcCcccccCceeccCcccccccccCccchhHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999 9999974 221 1 13578889999999999999999999999999999999999
Q ss_pred HHHHHHhcccCHHHHHHHHhhcCCCCCCCCChhhh
Q 002961 804 VNELVEKKSLTKQEFFHLVELHGSLEPMPPSIVDI 838 (862)
Q Consensus 804 a~~LLeketL~~~ei~~il~~~~~~~~~p~s~~e~ 838 (862)
|+.||++++|+++||.++++.++...+....+++.
T Consensus 728 a~~LLeke~l~~ee~~~ll~~~~~~~~~~~~~~~~ 762 (774)
T KOG0731|consen 728 AEVLLEKEVLTGEEIIALLGERPPGMPEKNVIVEQ 762 (774)
T ss_pred HHHHHHhhhccHHHHHHHhccCCCcccccchhhhh
Confidence 99999999999999999999988665544444443
No 3
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-68 Score=607.56 Aligned_cols=402 Identities=46% Similarity=0.714 Sum_probs=377.9
Q ss_pred cccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHH
Q 002961 420 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 420 ~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~ 499 (862)
.|..+|.+.|.|++|+||||||||.|++++||+.+.||.+++.++|+..|+|.+..+++.+|.+++.++|||+||||||+
T Consensus 174 ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDA 253 (596)
T COG0465 174 KYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDA 253 (596)
T ss_pred hhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhh
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHH
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l 579 (862)
.+..++...+.|+..+.+++|+||.+||++..+.+|++|++||++|.+||+|+||||||+.|.++.||...|.+|++.|+
T Consensus 254 vGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~ 333 (596)
T COG0465 254 VGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHA 333 (596)
T ss_pred cccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHh
Confidence 99999887778889999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHhccccccc-cccccchhHHHHHH
Q 002961 580 RKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRK-ERSSETWRQVAINE 658 (862)
Q Consensus 580 ~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~~~~~~~-~~~~~~~r~vA~hE 658 (862)
+..++..++++..+|+.|+|++++|+.+++++|++.|.++++..|+..|+.+|++....|.-.+. ..++.+++.+||||
T Consensus 334 ~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhE 413 (596)
T COG0465 334 KNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHE 413 (596)
T ss_pred hcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999998776554333 46789999999999
Q ss_pred HHHHHHHHhCCCCCccceEEEecCCCCcccceecccchhhhhhccccHHHHHHHHHHhhChhhHHHhhcCCCCccccccc
Q 002961 659 AAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAE 738 (862)
Q Consensus 659 aGHAlva~ll~~~~~i~~VTI~pr~g~~lG~t~~~~~e~~~~~~~~Tr~~l~~~I~v~LAGraAEel~fG~~~~stga~~ 738 (862)
||||++++++++.++++++||+|| |.++||+.+.|.++ .+++|+.+++++|+++||||||||++||. ++|+|+++
T Consensus 414 aghalv~~~l~~~d~v~KvtIiPr-G~alG~t~~~Pe~d---~~l~sk~~l~~~i~~~lgGRaAEel~~g~-e~ttGa~~ 488 (596)
T COG0465 414 AGHALVGLLLPDADPVHKVTIIPR-GRALGYTLFLPEED---KYLMSKEELLDRIDVLLGGRAAEELIFGY-EITTGASN 488 (596)
T ss_pred HHHHHHHHhCCCCcccceeeeccC-chhhcchhcCCccc---cccccHHHHHHHHHHHhCCcHhhhhhhcc-cccccchh
Confidence 999999999999999999999999 79999999999874 78999999999999999999999999996 69999999
Q ss_pred hHHHHHHHHHHHH-HcCCCC-C-C--CCCcc-----------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002961 739 TADNARSAARTFV-LGGLSD-K-H--FGLSN-----------FWVADRINEIDTEALRILNLCYERAKEILQRNRNLLDA 802 (862)
Q Consensus 739 Dl~~At~iA~~mv-~~Gm~~-~-~--~~~~~-----------~~~~~~~~~id~ev~~iL~~a~~rA~~iL~~~r~~l~~ 802 (862)
|+++||.+|+.|| .|||++ + + ++... -|++.+...||.+|++++.++|++|++||.+|++.++.
T Consensus 489 D~~~at~~ar~mVt~~Gms~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~ID~evk~ii~~~y~~a~~il~~~~~~l~~ 568 (596)
T COG0465 489 DLEKATDLARAMVTEYGMSAKLGPVAYEQVEGVFLGRYQKAKNYSEETAQEIDREVKDIIDEAYERAKELLNENKDALET 568 (596)
T ss_pred hHHHHHHHHHHhhhhcCcchhhCceehhhcccccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999 999997 3 2 33211 27788999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCHHHHHHHHhhcC
Q 002961 803 VVNELVEKKSLTKQEFFHLVELHG 826 (862)
Q Consensus 803 la~~LLeketL~~~ei~~il~~~~ 826 (862)
+++.|+++|||++++|.+|++...
T Consensus 569 ~~~~Lle~Eti~~~~i~~i~~~~~ 592 (596)
T COG0465 569 LAEMLLEKETIDAEEIKDILAGRK 592 (596)
T ss_pred HHHHHHHhhccCHHHHHHHHhccc
Confidence 999999999999999999998765
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.6e-65 Score=604.97 Aligned_cols=402 Identities=43% Similarity=0.652 Sum_probs=364.3
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhh
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGR 502 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~ 502 (862)
.++...|.+++|+||||||||+|++++|++++.+++.++++.+...+.|.....++.+|..+....|||+||||+|.++.
T Consensus 210 ~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~ 289 (638)
T CHL00176 210 AVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGR 289 (638)
T ss_pred hccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhh
Confidence 45677889999999999999999999999999999999999988888888888889999999999999999999999987
Q ss_pred hccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccC
Q 002961 503 ERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK 582 (862)
Q Consensus 503 ~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~ 582 (862)
.++...++++.....+++.||..||++..+.+++||++||+++.+|++++||||||++|.|++|+.++|.+||+.++...
T Consensus 290 ~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~ 369 (638)
T CHL00176 290 QRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK 369 (638)
T ss_pred cccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc
Confidence 76654445667777899999999999988889999999999999999999999999999999999999999999999988
Q ss_pred CCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHhccccccccccccchhHHHHHHHHHH
Q 002961 583 PMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQVAINEAAMA 662 (862)
Q Consensus 583 ~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~~~~~~~~~~~~~~r~vA~hEaGHA 662 (862)
.+..+.++..+|..+.||+++||.++|++|+..+.+.+...||.+|+..|++....+.......++.+++++||||||||
T Consensus 370 ~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~~~~~~~~~~~~vA~hEaGhA 449 (638)
T CHL00176 370 KLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAGLEGTPLEDSKNKRLIAYHEVGHA 449 (638)
T ss_pred ccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhccCccccHHHHHHHHHHhhhhH
Confidence 88888999999999999999999999999999999999999999999999987655443333445778899999999999
Q ss_pred HHHHhCCCCCccceEEEecCCCCcccceecccchhhhhhccccHHHHHHHHHHhhChhhHHHhhcCCCCccccccchHHH
Q 002961 663 VVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADN 742 (862)
Q Consensus 663 lva~ll~~~~~i~~VTI~pr~g~~lG~t~~~~~e~~~~~~~~Tr~~l~~~I~v~LAGraAEel~fG~~~~stga~~Dl~~ 742 (862)
|++++++..++|++|||.|| |.++||+.+.|.++ ..++||.+++++|+++|||||||+++||.+++|+|+++|+++
T Consensus 450 ~v~~~l~~~~~v~kvtI~pr-g~~~G~~~~~p~~~---~~~~t~~~l~~~i~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~ 525 (638)
T CHL00176 450 IVGTLLPNHDPVQKVTLIPR-GQAKGLTWFTPEED---QSLVSRSQILARIVGALGGRAAEEVVFGSTEVTTGASNDLQQ 525 (638)
T ss_pred HHHhhccCCCceEEEEEeec-CCCCCceEecCCcc---cccccHHHHHHHHHHHhhhHHHHHHhcCCCCcCCCchhHHHH
Confidence 99999999999999999999 88999999988765 678999999999999999999999999987899999999999
Q ss_pred HHHHHHHHH-HcCCCCCC---CCC--c------------ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002961 743 ARSAARTFV-LGGLSDKH---FGL--S------------NFWVADRINEIDTEALRILNLCYERAKEILQRNRNLLDAVV 804 (862)
Q Consensus 743 At~iA~~mv-~~Gm~~~~---~~~--~------------~~~~~~~~~~id~ev~~iL~~a~~rA~~iL~~~r~~l~~la 804 (862)
||.+|+.|| .|||+.++ ++. . ..++.++...||.+|+++|++||++|++||++||+.|++||
T Consensus 526 AT~iA~~mv~~~Gm~~~g~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~la 605 (638)
T CHL00176 526 VTNLARQMVTRFGMSSIGPISLESNNSTDPFLGRFMQRNSEYSEEIADKIDMEVRSILHTCYQYAYQILKDNRVLIDLLV 605 (638)
T ss_pred HHHHHHHHHHHhCCCcCCceeecCCCCcccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999 99999642 211 1 12567788999999999999999999999999999999999
Q ss_pred HHHHHhcccCHHHHHHHHhhcCCC
Q 002961 805 NELVEKKSLTKQEFFHLVELHGSL 828 (862)
Q Consensus 805 ~~LLeketL~~~ei~~il~~~~~~ 828 (862)
++|+++|+|+++||.+|++.+...
T Consensus 606 ~~Lle~Etl~~~ei~~il~~~~~~ 629 (638)
T CHL00176 606 ELLLQKETIDGDEFREIVNSYTIL 629 (638)
T ss_pred HHHHHhCccCHHHHHHHHhhcCCC
Confidence 999999999999999999987643
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=5e-63 Score=589.75 Aligned_cols=399 Identities=40% Similarity=0.612 Sum_probs=360.8
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhh
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRE 503 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~ 503 (862)
++...|.+++|+||||||||+++++++++++.+++.++++++...+.+.....++.+|..+....|+|+||||+|.++..
T Consensus 180 ~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~ 259 (644)
T PRK10733 180 LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ 259 (644)
T ss_pred cCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhc
Confidence 44566788999999999999999999999999999999999888899988888999999999999999999999999887
Q ss_pred ccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCC
Q 002961 504 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP 583 (862)
Q Consensus 504 ~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~ 583 (862)
++...+.+....+.+++.+|..||++..+.+++||+|||+++.||++++||||||++|.|+.|+.++|.+||+.++...+
T Consensus 260 r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~ 339 (644)
T PRK10733 260 RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP 339 (644)
T ss_pred cCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCC
Confidence 76544445566778999999999999988899999999999999999999999999999999999999999999999988
Q ss_pred CCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHhccccc-cccccccchhHHHHHHHHHH
Q 002961 584 MADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLD-RKERSSETWRQVAINEAAMA 662 (862)
Q Consensus 584 ~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~~~~~-~~~~~~~~~r~vA~hEaGHA 662 (862)
+..++++..++..+.|||++||.++|++|+..|.+.++..|+.+|+..|++....+... ....++++++.+|+||+|||
T Consensus 340 l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha 419 (644)
T PRK10733 340 LAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHA 419 (644)
T ss_pred CCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999866544322 12345678899999999999
Q ss_pred HHHHhCCCCCccceEEEecCCCCcccceecccchhhhhhccccHHHHHHHHHHhhChhhHHHhhcCCCCccccccchHHH
Q 002961 663 VVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADN 742 (862)
Q Consensus 663 lva~ll~~~~~i~~VTI~pr~g~~lG~t~~~~~e~~~~~~~~Tr~~l~~~I~v~LAGraAEel~fG~~~~stga~~Dl~~ 742 (862)
|++++++...++++|||+|| |.++||+.+.|.++ ..+.||.+++++|+|+|||||||+++||.+++|+|+++|+++
T Consensus 420 ~~~~~~~~~~~~~~v~i~pr-g~~~g~~~~~~~~~---~~~~~~~~l~~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~ 495 (644)
T PRK10733 420 IIGRLVPEHDPVHKVTIIPR-GRALGVTFFLPEGD---AISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKV 495 (644)
T ss_pred HHHHHccCCCceeEEEEecc-CCCcceeEECCCcc---cccccHHHHHHHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHH
Confidence 99999999999999999999 88999999988765 556899999999999999999999999988899999999999
Q ss_pred HHHHHHHHH-HcCCCC-CC---CCCc-------------ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002961 743 ARSAARTFV-LGGLSD-KH---FGLS-------------NFWVADRINEIDTEALRILNLCYERAKEILQRNRNLLDAVV 804 (862)
Q Consensus 743 At~iA~~mv-~~Gm~~-~~---~~~~-------------~~~~~~~~~~id~ev~~iL~~a~~rA~~iL~~~r~~l~~la 804 (862)
||.+|+.|| .|||++ ++ +... ..++.++...||.+|+++|++||++|++||++||+.|++||
T Consensus 496 AT~lA~~mv~~~Gms~~lg~~~~~~~~~~~~lg~~~~~~~~~s~~~~~~id~ev~~il~~~~~~a~~iL~~~~~~l~~la 575 (644)
T PRK10733 496 ATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTDNMDILHAMK 575 (644)
T ss_pred HHHHHHHHHHHhCCCccccchhhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999 999997 32 2211 12566788899999999999999999999999999999999
Q ss_pred HHHHHhcccCHHHHHHHHhhcC
Q 002961 805 NELVEKKSLTKQEFFHLVELHG 826 (862)
Q Consensus 805 ~~LLeketL~~~ei~~il~~~~ 826 (862)
++|+++|+|+++||.+|+..+.
T Consensus 576 ~~Lle~etl~~~ei~~i~~~~~ 597 (644)
T PRK10733 576 DALMKYETIDAPQIDDLMARRD 597 (644)
T ss_pred HHHHHhceeCHHHHHHHHhcCC
Confidence 9999999999999999998764
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2.6e-60 Score=553.60 Aligned_cols=397 Identities=47% Similarity=0.727 Sum_probs=356.0
Q ss_pred ccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHh
Q 002961 421 YRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAV 500 (862)
Q Consensus 421 ~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l 500 (862)
+..++...|.+++|+||||||||+|+++||++++.+++.++++.+...+.|.....++.+|+.++...|+||||||+|.+
T Consensus 80 ~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l 159 (495)
T TIGR01241 80 FTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAV 159 (495)
T ss_pred HHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhh
Confidence 34567788899999999999999999999999999999999999888899988888999999999999999999999999
Q ss_pred hhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHc
Q 002961 501 GRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR 580 (862)
Q Consensus 501 ~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~ 580 (862)
+..+.....++.......++.||..||++....+++||+|||+++.+|++++||||||++|+++.|+.++|.+||+.++.
T Consensus 160 ~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~ 239 (495)
T TIGR01241 160 GRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAK 239 (495)
T ss_pred hhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHh
Confidence 87765433344566678899999999999888899999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHhcccc-ccccccccchhHHHHHHH
Q 002961 581 KKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGML-DRKERSSETWRQVAINEA 659 (862)
Q Consensus 581 ~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~~~~-~~~~~~~~~~r~vA~hEa 659 (862)
......+.++..++..+.||+++||.++|++|+..+.+++...|+.+|+..|++....+.. .....++..++++|+||+
T Consensus 240 ~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEa 319 (495)
T TIGR01241 240 NKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEA 319 (495)
T ss_pred cCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHH
Confidence 8877788899999999999999999999999999999989889999999999997665432 223345788899999999
Q ss_pred HHHHHHHhCCCCCccceEEEecCCCCcccceecccchhhhhhccccHHHHHHHHHHhhChhhHHHhhcCCCCccccccch
Q 002961 660 AMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAET 739 (862)
Q Consensus 660 GHAlva~ll~~~~~i~~VTI~pr~g~~lG~t~~~~~e~~~~~~~~Tr~~l~~~I~v~LAGraAEel~fG~~~~stga~~D 739 (862)
||||++++++...+++.+||.|+ |..+||+.+.+.+. .+..|+.+++++|+|+|||||||+++||. +|+|+++|
T Consensus 320 GhAlv~~~l~~~~~v~~vsi~pr-g~~~G~~~~~~~~~---~~~~t~~~l~~~i~v~LaGraAE~~~~G~--~s~Ga~~D 393 (495)
T TIGR01241 320 GHALVGLLLKDADPVHKVTIIPR-GQALGYTQFLPEED---KYLYTKSQLLAQIAVLLGGRAAEEIIFGE--VTTGASND 393 (495)
T ss_pred hHHHHHHhcCCCCceEEEEEeec-CCccceEEecCccc---cccCCHHHHHHHHHHHhhHHHHHHHHhcC--CCCCchHH
Confidence 99999999998899999999999 78999998877653 56889999999999999999999999995 99999999
Q ss_pred HHHHHHHHHHHH-HcCCCC-CC---CCCc-------------ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002961 740 ADNARSAARTFV-LGGLSD-KH---FGLS-------------NFWVADRINEIDTEALRILNLCYERAKEILQRNRNLLD 801 (862)
Q Consensus 740 l~~At~iA~~mv-~~Gm~~-~~---~~~~-------------~~~~~~~~~~id~ev~~iL~~a~~rA~~iL~~~r~~l~ 801 (862)
+++||.+|+.|| .|||++ .+ +... ..+++.+...+|.+|+++|+++|++|++||++||+.|+
T Consensus 394 l~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~~l~~~~~~~~~~s~~~~~~id~~v~~lL~~a~~ra~~lL~~~~~~l~ 473 (495)
T TIGR01241 394 IKQATNIARAMVTEWGMSDKLGPVAYGSDGGDVFLGRGFAKAKEYSEETAREIDEEVKRIIEEAYKRAKQILTENRDELE 473 (495)
T ss_pred HHHHHHHHHHHHHHhCCCcccCceeeccCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999 899997 31 2111 13566788889999999999999999999999999999
Q ss_pred HHHHHHHHhcccCHHHHHHHHh
Q 002961 802 AVVNELVEKKSLTKQEFFHLVE 823 (862)
Q Consensus 802 ~la~~LLeketL~~~ei~~il~ 823 (862)
+||++|+++++|+++||++|++
T Consensus 474 ~la~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 474 LLAKALLEKETITREEIKELLA 495 (495)
T ss_pred HHHHHHHHcCeeCHHHHHHHhC
Confidence 9999999999999999999974
No 7
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=7.4e-44 Score=437.90 Aligned_cols=292 Identities=19% Similarity=0.212 Sum_probs=246.6
Q ss_pred cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhh--------------------------------
Q 002961 422 RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY-------------------------------- 469 (862)
Q Consensus 422 ~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~-------------------------------- 469 (862)
..+|+.+|+||+|+||||||||.|||+||++++.|++.+++++++..+
T Consensus 1623 lrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~ 1702 (2281)
T CHL00206 1623 LRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELL 1702 (2281)
T ss_pred HHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhh
Confidence 478999999999999999999999999999999999999999887543
Q ss_pred ---------cccc--hhhHHHHHHHHHhcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc---CCCcE
Q 002961 470 ---------VGVG--ASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---GRGNV 535 (862)
Q Consensus 470 ---------~gq~--~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~---~~~~v 535 (862)
.+.+ ...++.+|+.|+..+|||++|||||+++... ..+.+++.|+..|++.. ...+|
T Consensus 1703 e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~~~~s~~~V 1773 (2281)
T CHL00206 1703 TMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDCERCSTRNI 1773 (2281)
T ss_pred hhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhccccccCCCCCE
Confidence 1111 2236889999999999999999999997541 12236889999999763 34689
Q ss_pred EEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHH--ccCCCCC-cccHHHHHhhcCCCCHHHHHHHHHHH
Q 002961 536 ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA--RKKPMAD-DVDYLAVASMTDGMVGAELANIVEVA 612 (862)
Q Consensus 536 lvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l--~~~~~~~-~~dl~~lA~~t~G~s~adI~~lv~~A 612 (862)
+||||||.|+.|||||+||||||+.|.++.|+..+|.+++...+ ++..+.. .+++..+|..|.|||||||+++|++|
T Consensus 1774 IVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEA 1853 (2281)
T CHL00206 1774 LVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEA 1853 (2281)
T ss_pred EEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988653 3444443 36899999999999999999999999
Q ss_pred HHHHHHhCCcccCHHHHHHHHHHHhccccccccccccchhHHHHHHHHHHHHHHhCCCCCccceEEEec-----CCCCcc
Q 002961 613 AINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAP-----RAGREL 687 (862)
Q Consensus 613 ~~~A~~~~~~~It~edl~~Al~~~~~~~~~~~~~~~~~~r~vA~hEaGHAlva~ll~~~~~i~~VTI~p-----r~g~~l 687 (862)
+..|.++++..|+.+++..|+++...+.-.. ..+. ..+.+++||+||||++.++++.+++++|||.+ +.|.++
T Consensus 1854 aliAirq~ks~Id~~~I~~Al~Rq~~g~~~~-~~~~-~~~~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~~~~y 1931 (2281)
T CHL00206 1854 LSISITQKKSIIDTNTIRSALHRQTWDLRSQ-VRSV-QDHGILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGDSY 1931 (2281)
T ss_pred HHHHHHcCCCccCHHHHHHHHHHHHhhhhhc-ccCc-chhhhhhhHHhHHHHHHhccCCCCcceEEEecCCccccCcccc
Confidence 9999999999999999999999877654322 1222 33457999999999999999999999999953 225677
Q ss_pred cceecccchhhhhhccccHHHHHHHHHHhhChhhHHHhhcCC
Q 002961 688 GYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGE 729 (862)
Q Consensus 688 G~t~~~~~e~~~~~~~~Tr~~l~~~I~v~LAGraAEel~fG~ 729 (862)
||+++.+.+ .++++.+++.+|.+||||||||++||+.
T Consensus 1932 l~~wyle~~-----~~mkk~tiL~~Il~cLAGraAedlwf~~ 1968 (2281)
T CHL00206 1932 LYKWYFELG-----TSMKKLTILLYLLSCSAGSVAQDLWSLP 1968 (2281)
T ss_pred eeEeecCCc-----ccCCHHHHHHHHHHHhhhhhhhhhccCc
Confidence 999888753 6899999999999999999999999975
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-40 Score=355.58 Aligned_cols=219 Identities=49% Similarity=0.794 Sum_probs=211.3
Q ss_pred cccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHH
Q 002961 420 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 420 ~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~ 499 (862)
.|..+|+.+|.||+||||||||||.|||++|+..+..|+.+..++++..|+|.+...++.+|.-++.++|||+||||||+
T Consensus 176 lF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDA 255 (406)
T COG1222 176 LFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDA 255 (406)
T ss_pred HHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhh
Confidence 67799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHH
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l 579 (862)
++..+...+.||......++-+||.+||+|.+.++|-||++||++|.|||||+||||||+.|+||+|+.+.|.+||+.|.
T Consensus 256 Ig~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHt 335 (406)
T COG1222 256 IGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHT 335 (406)
T ss_pred hhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHh
Confidence 99988777778888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHhc
Q 002961 580 RKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEER 638 (862)
Q Consensus 580 ~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~ 638 (862)
++.++.+++|++.+|..++|+||+||.++|.+|...|.+..+..||++|+.+|++....
T Consensus 336 rkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 336 RKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred hhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999986543
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-36 Score=339.68 Aligned_cols=218 Identities=44% Similarity=0.748 Sum_probs=205.0
Q ss_pred cccccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHH
Q 002961 418 SDMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDEL 497 (862)
Q Consensus 418 ~~~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEi 497 (862)
...|.++|+.+|.||+|+||||||||+++|+||.+.+.+|+.+.+.++...|+|.....++.+|+.++..+|||+|+|||
T Consensus 457 pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEi 536 (693)
T KOG0730|consen 457 PEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEI 536 (693)
T ss_pred hHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhH
Confidence 34677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHH
Q 002961 498 DAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKV 577 (862)
Q Consensus 498 d~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~ 577 (862)
|+++..|+. +++...+.++++||.+||++....+|+||++||+|+.||++|+||||||+.|++|+||.+.|.+||+.
T Consensus 537 Dsi~~~R~g---~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~ 613 (693)
T KOG0730|consen 537 DALAGSRGG---SSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQ 613 (693)
T ss_pred HhHhhccCC---CccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHH
Confidence 999998862 33467788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhC--CcccCHHHHHHHHHHHhc
Q 002961 578 HARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG--RTEITTDDLLQAAQIEER 638 (862)
Q Consensus 578 ~l~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~--~~~It~edl~~Al~~~~~ 638 (862)
++++.++.+++|+..||..|+||||+||.++|++|+..|.++. -..|+.+|+.+|+.....
T Consensus 614 ~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~ 676 (693)
T KOG0730|consen 614 CAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRP 676 (693)
T ss_pred HHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999874 457999999999975544
No 10
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=1.4e-34 Score=301.39 Aligned_cols=193 Identities=34% Similarity=0.441 Sum_probs=162.6
Q ss_pred CHHHHHHHHHHHhcccccc-ccccccchhHHHHHHHHHHHHHHhCCCCCccceEEEecCCCCcccceecccchhhhhhcc
Q 002961 625 TTDDLLQAAQIEERGMLDR-KERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGM 703 (862)
Q Consensus 625 t~edl~~Al~~~~~~~~~~-~~~~~~~~r~vA~hEaGHAlva~ll~~~~~i~~VTI~pr~g~~lG~t~~~~~e~~~~~~~ 703 (862)
|.+||.+|++....|...+ ...++++++++|+|||||||++++++...+|.+|||+|+ |.++||+.+.+.+. ...
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~pr-g~~~G~~~~~~~~~---~~~ 76 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPR-GSALGFTQFTPDED---RYI 76 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTT-CCCCHCCEECHHTT----SS
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecC-CCcceeEEeccchh---ccc
Confidence 6789999999888776553 566789999999999999999999998889999999999 66999999987654 456
Q ss_pred ccHHHHHHHHHHhhChhhHHHhhcCCCCccccccchHHHHHHHHHHHH-HcCCCC-CC---CCC-cc-------------
Q 002961 704 LSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV-LGGLSD-KH---FGL-SN------------- 764 (862)
Q Consensus 704 ~Tr~~l~~~I~v~LAGraAEel~fG~~~~stga~~Dl~~At~iA~~mv-~~Gm~~-~~---~~~-~~------------- 764 (862)
.||.+|+++|+|+|||||||+++||.+++|+|+++|+.+||.+|+.|| .|||++ ++ ++. .+
T Consensus 77 ~t~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~ 156 (213)
T PF01434_consen 77 RTRSYLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDEVFLGREWNSRR 156 (213)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-SSS-E---EEE
T ss_pred ccHHHHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeeccccccccccccccccC
Confidence 899999999999999999999999988899999999999999999999 899998 32 211 11
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHH
Q 002961 765 FWVADRINEIDTEALRILNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEFFHL 821 (862)
Q Consensus 765 ~~~~~~~~~id~ev~~iL~~a~~rA~~iL~~~r~~l~~la~~LLeketL~~~ei~~i 821 (862)
.++.++...+|.+|+++|+++|++|++||++||+.|++||++|+++++|+++||.+|
T Consensus 157 ~~s~~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 157 PMSEETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 144567888999999999999999999999999999999999999999999999986
No 11
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-34 Score=322.80 Aligned_cols=217 Identities=43% Similarity=0.715 Sum_probs=198.3
Q ss_pred cccccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHH
Q 002961 418 SDMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDEL 497 (862)
Q Consensus 418 ~~~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEi 497 (862)
.+.|..+|+..|.||+|+||||||||.|+|++|++.+..|+.+...++...|+|.....++.+|+.++...|||+|+||+
T Consensus 534 pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEi 613 (802)
T KOG0733|consen 534 PDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEI 613 (802)
T ss_pred HHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecch
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHH
Q 002961 498 DAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKV 577 (862)
Q Consensus 498 d~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~ 577 (862)
|++++.++..+ ......++|+||.+||++..+.+|.||++||+||.+||+++||||||..+++++|+.++|.+||+.
T Consensus 614 DaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~ 690 (802)
T KOG0733|consen 614 DALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKT 690 (802)
T ss_pred hhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHH
Confidence 99999886543 444455899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHc--cCCCCCcccHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHhC-------C---------cccCHHHHHHHHHHHh
Q 002961 578 HAR--KKPMADDVDYLAVASMTD--GMVGAELANIVEVAAINMMRDG-------R---------TEITTDDLLQAAQIEE 637 (862)
Q Consensus 578 ~l~--~~~~~~~~dl~~lA~~t~--G~s~adI~~lv~~A~~~A~~~~-------~---------~~It~edl~~Al~~~~ 637 (862)
+++ +.++..++|++.||..+. ||||+||..||++|...|.++. . ..+|+.|+++|+....
T Consensus 691 ~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~ 770 (802)
T KOG0733|consen 691 ITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIR 770 (802)
T ss_pred HhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcC
Confidence 999 678899999999999877 9999999999999999888751 1 1367779999987543
No 12
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-31 Score=271.01 Aligned_cols=218 Identities=40% Similarity=0.686 Sum_probs=206.2
Q ss_pred cccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHH
Q 002961 420 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 420 ~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~ 499 (862)
+|..+|+..|.|++|+||||+|||.|++++|....+.|+.++.++++..|.|.+...++.+|--++.++|+|+|+||||+
T Consensus 172 LF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmarehapsiifmdeids 251 (404)
T KOG0728|consen 172 LFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 251 (404)
T ss_pred HHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccc
Confidence 56799999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHH
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l 579 (862)
++..+..+++.|+.....+.-.||..+|+|....++-||.+||+.|.+||+|+||||+|+.|+||+|+.+.|.+|++.|.
T Consensus 252 igs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 252 IGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 99888776655666677777889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHh
Q 002961 580 RKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 637 (862)
Q Consensus 580 ~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 637 (862)
++.++...+++..+|....|.||+++..+|.+|...|.++.+..+|.+|++-|+....
T Consensus 332 rkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kvm 389 (404)
T KOG0728|consen 332 RKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 389 (404)
T ss_pred hhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987544
No 13
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.2e-32 Score=306.03 Aligned_cols=199 Identities=42% Similarity=0.695 Sum_probs=186.6
Q ss_pred cccccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHH
Q 002961 418 SDMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDEL 497 (862)
Q Consensus 418 ~~~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEi 497 (862)
...|..+|+.+|+||+|+||||||||.|+++|||+++.||+.|+..+++..+.|...+.++.+|+.+....|||+|||||
T Consensus 212 Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeI 291 (802)
T KOG0733|consen 212 PEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEI 291 (802)
T ss_pred chhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecc
Confidence 34667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCcCCCCchhHHHHHHHHHHhhccccCC----CcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHH
Q 002961 498 DAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGR----GNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRME 573 (862)
Q Consensus 498 d~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~----~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~ 573 (862)
|++.+.+.. .+-+..+.++++||.+||++... ..|+||++||+||.|||+|+|+||||+.|-+..|+...|.+
T Consensus 292 DAI~pkRe~---aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~ 368 (802)
T KOG0733|consen 292 DAITPKREE---AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREE 368 (802)
T ss_pred cccccchhh---HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHH
Confidence 999988743 34566778999999999997654 57999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Q 002961 574 ILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 619 (862)
Q Consensus 574 Il~~~l~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~ 619 (862)
||+..+++..++.++|+..||..|+||.|+||..||.+|+..|.++
T Consensus 369 IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 369 ILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred HHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988876
No 14
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=8.3e-31 Score=266.96 Aligned_cols=217 Identities=38% Similarity=0.632 Sum_probs=201.4
Q ss_pred cccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHH
Q 002961 420 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 420 ~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~ 499 (862)
+|..+|+.+|+||+++||||||||.|+|++|+.....|+.+..++|+..|+|.+...++.+|..++.++|+|+||||+|+
T Consensus 180 ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideida 259 (408)
T KOG0727|consen 180 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDA 259 (408)
T ss_pred HHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHH
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l 579 (862)
++..+-....+.......++-.||..||+|....++-||++||+.+.+||+|+||||+|+.|+||.|+..+++-+|....
T Consensus 260 iatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~tit 339 (408)
T KOG0727|consen 260 IATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 339 (408)
T ss_pred HhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhh
Confidence 97765433334445556677889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHH
Q 002961 580 RKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 636 (862)
Q Consensus 580 ~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~ 636 (862)
.+.++.+++|++.+..+-+..|+++|..+|++|...|.+.++-.|...|++++....
T Consensus 340 skm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 340 SKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTV 396 (408)
T ss_pred hcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999998644
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-31 Score=272.51 Aligned_cols=218 Identities=41% Similarity=0.693 Sum_probs=206.5
Q ss_pred ccccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHH
Q 002961 419 DMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELD 498 (862)
Q Consensus 419 ~~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid 498 (862)
+.|.++|+++|.|+++|||||||||.++++.|...+..|..+....++..|+|.+...++..|..++..+|+|+||||+|
T Consensus 195 ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElD 274 (424)
T KOG0652|consen 195 EKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELD 274 (424)
T ss_pred HHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechh
Confidence 35679999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHH
Q 002961 499 AVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH 578 (862)
Q Consensus 499 ~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~ 578 (862)
+++..+..+..+|......+.-.||..+|+|.....+-||++||+.+.|||+|+|.||+|+.|+||.|+.+.|..|++.|
T Consensus 275 AIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIH 354 (424)
T KOG0652|consen 275 AIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIH 354 (424)
T ss_pred hhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHh
Confidence 99988776666888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHH
Q 002961 579 ARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 636 (862)
Q Consensus 579 l~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~ 636 (862)
.++..+.++++++.+|+.|++|+|+....+|-+|...|.+++...|+.+|+.+.+...
T Consensus 355 sRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heDfmegI~eV 412 (424)
T KOG0652|consen 355 SRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFMEGILEV 412 (424)
T ss_pred hhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988643
No 16
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.2e-31 Score=274.73 Aligned_cols=218 Identities=40% Similarity=0.697 Sum_probs=202.1
Q ss_pred ccccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHH
Q 002961 419 DMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELD 498 (862)
Q Consensus 419 ~~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid 498 (862)
..|..+|+++|.||+|||+||||||.|++++|+.....|..+..++++..|+|.+...++.+|..+..++|+|+||||||
T Consensus 209 E~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEId 288 (440)
T KOG0726|consen 209 EYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 288 (440)
T ss_pred HHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccCcCCCCch-hHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHH
Q 002961 499 AVGRERGLIKGSGGQ-ERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKV 577 (862)
Q Consensus 499 ~l~~~~~~~~~Sgge-~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~ 577 (862)
+++..+-. +.|||+ ....++-.||..+|+|..++.|-||.+||..+.|||+|+||||+|+.|.||.||...+..||..
T Consensus 289 AiGtKRyd-s~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~I 367 (440)
T KOG0726|consen 289 AIGTKRYD-SNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQI 367 (440)
T ss_pred hhcccccc-CCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEE
Confidence 99876643 346664 3445666889999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHh
Q 002961 578 HARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 637 (862)
Q Consensus 578 ~l~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 637 (862)
|.....+..+++++.+...-+.+||+||..+|.+|...|.+..+-.+|.+|+..|.+...
T Consensus 368 HTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 368 HTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVL 427 (440)
T ss_pred eecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987554
No 17
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=5.1e-30 Score=289.52 Aligned_cols=219 Identities=37% Similarity=0.614 Sum_probs=198.9
Q ss_pred cccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHH
Q 002961 420 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 420 ~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~ 499 (862)
.+..+|+.+|.+++|+||||||||+|++++|+.++.+++.+.++.+...|.|.....++.+|..++...|+|+||||+|.
T Consensus 170 ~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~ 249 (398)
T PTZ00454 170 LYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDS 249 (398)
T ss_pred HHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhh
Confidence 55678999999999999999999999999999999999999988888889999888889999999999999999999999
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHH
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l 579 (862)
++..+.....+........+..++..++++....+++||+|||+++.+||+++||||||+.|+|++|+.++|..||+.++
T Consensus 250 i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 250 IATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred hccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 98765432223334556678899999999888889999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHhc
Q 002961 580 RKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEER 638 (862)
Q Consensus 580 ~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~ 638 (862)
.+..+..++++..++..++||||+||.++|++|...|.++++..|+.+|+..|+.....
T Consensus 330 ~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 330 SKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred hcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHh
Confidence 98888899999999999999999999999999999999999999999999999986544
No 18
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.3e-30 Score=293.34 Aligned_cols=213 Identities=39% Similarity=0.704 Sum_probs=194.5
Q ss_pred cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhh
Q 002961 422 RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501 (862)
Q Consensus 422 ~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~ 501 (862)
.+.|++...||+||||||||||.+||++|-++...|..+...++...|+||...+++.+|+.++...|||+|+||+|+++
T Consensus 698 fssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlA 777 (953)
T KOG0736|consen 698 FSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLA 777 (953)
T ss_pred hhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccC
Confidence 35778888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCcCCCCchhHHHHHHHHHHhhccccC--CCcEEEEEecCCCCCCCccccCCCCccccccCCCC-CHHhHHHHHHHH
Q 002961 502 RERGLIKGSGGQERDATLNQLLVCLDGFEG--RGNVITIASTNRPDILDPALVRPGRFDRKIFIPKP-GLIGRMEILKVH 578 (862)
Q Consensus 502 ~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~--~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P-~~~~R~~Il~~~ 578 (862)
+.|+..++|||-.. .++.+||.+||++.. ...|+||++||+||.|||+|+||||||..+++.++ +.+.+..+|+..
T Consensus 778 P~RG~sGDSGGVMD-RVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~Al 856 (953)
T KOG0736|consen 778 PNRGRSGDSGGVMD-RVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEAL 856 (953)
T ss_pred ccCCCCCCccccHH-HHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHH
Confidence 99999999988654 467899999999984 56899999999999999999999999999999988 567789999999
Q ss_pred HccCCCCCcccHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHh-------C----------CcccCHHHHHHHHHH
Q 002961 579 ARKKPMADDVDYLAVASMTD-GMVGAELANIVEVAAINMMRD-------G----------RTEITTDDLLQAAQI 635 (862)
Q Consensus 579 l~~~~~~~~~dl~~lA~~t~-G~s~adI~~lv~~A~~~A~~~-------~----------~~~It~edl~~Al~~ 635 (862)
.++..++.++|+..+|+.++ .|||+|+..+|..|...|+++ | ...|+++|+..+++.
T Consensus 857 TrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~ 931 (953)
T KOG0736|consen 857 TRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKR 931 (953)
T ss_pred HHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHh
Confidence 99999999999999999887 699999999999999988876 1 125899999988764
No 19
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4e-30 Score=263.70 Aligned_cols=219 Identities=38% Similarity=0.642 Sum_probs=202.6
Q ss_pred cccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHH
Q 002961 420 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 420 ~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~ 499 (862)
.|.++|+.+|.||+++||||||||.+++++|+..+..|+.+-.++++..|+|.+...++.+|+-++....|++|+||||+
T Consensus 202 rfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 202 RFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred HHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeecccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHH
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l 579 (862)
+++.+-..+..|......+.-.|+..||+|.+++++-|+.+||+|+.|||+|+||||+|+.++|..|+.+.|..||+.|.
T Consensus 282 iggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kiha 361 (435)
T KOG0729|consen 282 IGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHA 361 (435)
T ss_pred ccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEec
Confidence 98776544444555555566678899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHhc
Q 002961 580 RKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEER 638 (862)
Q Consensus 580 ~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~ 638 (862)
+...+..++-++.+|..++..+|++|..+|.+|...|.+..+...|..|+.+|+.....
T Consensus 362 ksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~atekdfl~av~kvvk 420 (435)
T KOG0729|consen 362 KSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVNKVVK 420 (435)
T ss_pred cccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999989999999999985544
No 20
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.96 E-value=4.2e-29 Score=283.83 Aligned_cols=218 Identities=41% Similarity=0.695 Sum_probs=197.8
Q ss_pred cccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHH
Q 002961 420 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 420 ~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~ 499 (862)
.+.++++.+|.+++|+||||||||++++++|+.++.+++.+..+++...|.|.....++.+|..+....|+|+||||+|.
T Consensus 208 ~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~ 287 (438)
T PTZ00361 208 LYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDA 287 (438)
T ss_pred HHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHH
Confidence 45578899999999999999999999999999999999999998888889998888889999999999999999999999
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHH
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l 579 (862)
++..+.....++.......+..+|..++++....++.||+|||+++.+|++++||||||+.|+|++|+.++|.+||+.++
T Consensus 288 l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 288 IGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred HhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 98766543333444455677789999999887788999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHh
Q 002961 580 RKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 637 (862)
Q Consensus 580 ~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 637 (862)
.+..+..++++..++..++|+|++||.++|++|+..|.++++..|+.+|+..|+....
T Consensus 368 ~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 368 SKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVL 425 (438)
T ss_pred hcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHH
Confidence 9888888999999999999999999999999999999999999999999999998654
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.96 E-value=4.6e-29 Score=282.54 Aligned_cols=219 Identities=49% Similarity=0.781 Sum_probs=200.2
Q ss_pred cccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHH
Q 002961 420 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 420 ~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~ 499 (862)
.+..+|+.+|.+|+|+||||||||++++++|..++.+++.++++.+...|.|.....++.+|+.+....|++|||||+|.
T Consensus 156 ~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~ 235 (389)
T PRK03992 156 LFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDA 235 (389)
T ss_pred HHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 45578899999999999999999999999999999999999999988889998888889999999999999999999999
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHH
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l 579 (862)
++..+.....++.......+..++..++++...+++.||+|||.++.+|++++||||||+.|.|++|+.++|.+||+.++
T Consensus 236 l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~ 315 (389)
T PRK03992 236 IAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHT 315 (389)
T ss_pred hhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHh
Confidence 98776554445555666678889999999888789999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHhc
Q 002961 580 RKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEER 638 (862)
Q Consensus 580 ~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~ 638 (862)
....+..++++..++..|.||+++||..+|++|...|.+++...|+.+||.+|+.....
T Consensus 316 ~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~ 374 (389)
T PRK03992 316 RKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMG 374 (389)
T ss_pred ccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhc
Confidence 98888888999999999999999999999999999999999999999999999986544
No 22
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.3e-29 Score=269.03 Aligned_cols=204 Identities=37% Similarity=0.582 Sum_probs=185.3
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccCc
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLI 507 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~ 507 (862)
+=.+|+++||||||||.|+|++|.+++..|+.|+.+.+...|-|...+.++-+|+-++.++|+.|||||||+++.+++..
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s 323 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS 323 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc
Confidence 33789999999999999999999999999999999999999999999999999999999999999999999999988743
Q ss_pred CCCCchhHHHHHHHHHHhhccccCC-Cc---EEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCC
Q 002961 508 KGSGGQERDATLNQLLVCLDGFEGR-GN---VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP 583 (862)
Q Consensus 508 ~~Sgge~~r~~l~~LL~~Ld~~~~~-~~---vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~ 583 (862)
+.++..|.+-+.||..||+..+. .+ |+|+++||.|..||.+|+| ||...|++|+|+.+.|..+++..++...
T Consensus 324 --~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~ 399 (491)
T KOG0738|consen 324 --SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVE 399 (491)
T ss_pred --cchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhcccc
Confidence 67788889999999999998653 23 8889999999999999999 9999999999999999999999999999
Q ss_pred CCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCc-----------------ccCHHHHHHHHHH
Q 002961 584 MADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRT-----------------EITTDDLLQAAQI 635 (862)
Q Consensus 584 ~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~-----------------~It~edl~~Al~~ 635 (862)
..++++++.|+..++||||+||.++|++|...++++--. .++..||+.|+..
T Consensus 400 ~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~ 468 (491)
T KOG0738|consen 400 LDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRK 468 (491)
T ss_pred CCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHH
Confidence 999999999999999999999999999999999886222 3666677776654
No 23
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.96 E-value=2.7e-29 Score=257.36 Aligned_cols=210 Identities=38% Similarity=0.622 Sum_probs=192.4
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhh
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGR 502 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~ 502 (862)
.|+-..|.+|+++||||||||.+++++|++...+++.+...++...|+|.+...++.+++.++..+|||+||||+|+++-
T Consensus 145 ~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaL 224 (368)
T COG1223 145 RFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIAL 224 (368)
T ss_pred HhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhh
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred hccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccC
Q 002961 503 ERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK 582 (862)
Q Consensus 503 ~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~ 582 (862)
++....--| -....+|.||.+||++..+.+|+.|++||+++.||+++++ ||...|+|..|+.++|..|++.++...
T Consensus 225 dRryQelRG--DVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~ 300 (368)
T COG1223 225 DRRYQELRG--DVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKF 300 (368)
T ss_pred hhhHHHhcc--cHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhC
Confidence 654321111 1234789999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCCCcccHHHHHhhcCCCCHHHHH-HHHHHHHHHHHHhCCcccCHHHHHHHHHHH
Q 002961 583 PMADDVDYLAVASMTDGMVGAELA-NIVEVAAINMMRDGRTEITTDDLLQAAQIE 636 (862)
Q Consensus 583 ~~~~~~dl~~lA~~t~G~s~adI~-~lv~~A~~~A~~~~~~~It~edl~~Al~~~ 636 (862)
++.-+.++..++..|.|+|++||. .++..|...|..+++..|+.+|+..|+...
T Consensus 301 Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k~ 355 (368)
T COG1223 301 PLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKKE 355 (368)
T ss_pred CCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHhh
Confidence 999999999999999999999997 567778889999999999999999999864
No 24
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=5.4e-29 Score=280.16 Aligned_cols=215 Identities=51% Similarity=0.818 Sum_probs=194.2
Q ss_pred ccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHh
Q 002961 421 YRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAV 500 (862)
Q Consensus 421 ~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l 500 (862)
+..+|+.+|.+++|+||||||||++++++++.++.+++.+..+.+...|.+.....++.+|..+....|++++|||+|.+
T Consensus 148 ~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l 227 (364)
T TIGR01242 148 FEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAI 227 (364)
T ss_pred HHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhh
Confidence 44678889999999999999999999999999999999998888777788888777899999998889999999999999
Q ss_pred hhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHc
Q 002961 501 GRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR 580 (862)
Q Consensus 501 ~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~ 580 (862)
+..+.....+++......+..++..++++...+++.||+|||.++.+|+++++|||||+.|.|+.|+.++|.+||+.++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~ 307 (364)
T TIGR01242 228 AAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTR 307 (364)
T ss_pred ccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHh
Confidence 77655444455556667788899999988777889999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 002961 581 KKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 635 (862)
Q Consensus 581 ~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 635 (862)
...+..++++..++..+.|++++||.++|++|...|.++++..|+.+|+..|+..
T Consensus 308 ~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 308 KMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEK 362 (364)
T ss_pred cCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 8888888999999999999999999999999999999999999999999999864
No 25
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.6e-28 Score=278.64 Aligned_cols=201 Identities=39% Similarity=0.711 Sum_probs=186.4
Q ss_pred cccccccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhH
Q 002961 416 KFSDMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFID 495 (862)
Q Consensus 416 ~~~~~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iD 495 (862)
.|...|.+..++.+.||+|+||||||||.|+.++|...+..++.+...++...|.|...+.++.+|..++...|||+|+|
T Consensus 688 kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFD 767 (952)
T KOG0735|consen 688 KYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFD 767 (952)
T ss_pred cchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEec
Confidence 44556778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHH
Q 002961 496 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEIL 575 (862)
Q Consensus 496 Eid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il 575 (862)
|+|+++++|+- +|.|- .+.++|+||.+||+..+-.+|.|+++|.+||.|||+|+||||+|+.++.+.|+..+|.+|+
T Consensus 768 EfdSiAPkRGh--DsTGV-TDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il 844 (952)
T KOG0735|consen 768 EFDSIAPKRGH--DSTGV-TDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEIL 844 (952)
T ss_pred cccccCcccCC--CCCCc-hHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHH
Confidence 99999999864 34443 3457899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Q 002961 576 KVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 619 (862)
Q Consensus 576 ~~~l~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~ 619 (862)
+..........++|+..+|..|+||||+||..++-.|.+.|.++
T Consensus 845 ~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 845 QVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred HHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 99998888999999999999999999999999999998877764
No 26
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.96 E-value=4.7e-28 Score=279.08 Aligned_cols=209 Identities=28% Similarity=0.422 Sum_probs=183.5
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhh
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGR 502 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~ 502 (862)
.+|+..|.+|+|+||||||||+++++||++++.+++.++++.+...|+|.....++.+|..+....|||+||||||.+..
T Consensus 253 ~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~ 332 (489)
T CHL00195 253 NYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFS 332 (489)
T ss_pred hcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhc
Confidence 56788999999999999999999999999999999999999988889999999999999999999999999999999876
Q ss_pred hccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccC
Q 002961 503 ERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK 582 (862)
Q Consensus 503 ~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~ 582 (862)
.....+ .+.....+++.|+..|+.. ..+++||+|||+++.||++++|+||||..++++.|+.++|.+||+.++.+.
T Consensus 333 ~~~~~~--d~~~~~rvl~~lL~~l~~~--~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~ 408 (489)
T CHL00195 333 NSESKG--DSGTTNRVLATFITWLSEK--KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF 408 (489)
T ss_pred cccCCC--CchHHHHHHHHHHHHHhcC--CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhc
Confidence 433222 2234456788888888743 457999999999999999999999999999999999999999999999875
Q ss_pred CC--CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHH
Q 002961 583 PM--ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 636 (862)
Q Consensus 583 ~~--~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~ 636 (862)
.. ..+.++..+|..|.||||+||+++|.+|...|..+++ .+|.+|+..|+...
T Consensus 409 ~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~-~lt~~dl~~a~~~~ 463 (489)
T CHL00195 409 RPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR-EFTTDDILLALKQF 463 (489)
T ss_pred CCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHhc
Confidence 43 3478999999999999999999999999988887665 69999999998744
No 27
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=1e-27 Score=292.15 Aligned_cols=216 Identities=42% Similarity=0.767 Sum_probs=194.8
Q ss_pred ccccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHH
Q 002961 419 DMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELD 498 (862)
Q Consensus 419 ~~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid 498 (862)
..+..+++..|.+++|+||||||||++++++|++++.+++.++++++...|+|+....++.+|..++...|+|+||||+|
T Consensus 477 ~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid 556 (733)
T TIGR01243 477 EIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEID 556 (733)
T ss_pred HHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChh
Confidence 34557788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHH
Q 002961 499 AVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH 578 (862)
Q Consensus 499 ~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~ 578 (862)
.+++.++.. .++...+..++.||..||++....+++||+|||+++.||++++||||||++|++|+|+.++|.+||+.+
T Consensus 557 ~l~~~r~~~--~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~ 634 (733)
T TIGR01243 557 AIAPARGAR--FDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIH 634 (733)
T ss_pred hhhccCCCC--CCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHH
Confidence 998776432 223345668899999999998888999999999999999999999999999999999999999999999
Q ss_pred HccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhC------------------CcccCHHHHHHHHHHH
Q 002961 579 ARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG------------------RTEITTDDLLQAAQIE 636 (862)
Q Consensus 579 l~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~------------------~~~It~edl~~Al~~~ 636 (862)
+++..+..++++..+|..|+||||+||.++|++|+..|.++. ...|+.+|+..|+...
T Consensus 635 ~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~ 710 (733)
T TIGR01243 635 TRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKV 710 (733)
T ss_pred hcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHc
Confidence 998888899999999999999999999999999998888742 1268999999998743
No 28
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-27 Score=279.42 Aligned_cols=212 Identities=47% Similarity=0.792 Sum_probs=194.3
Q ss_pred ccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHh
Q 002961 421 YRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAV 500 (862)
Q Consensus 421 ~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l 500 (862)
+...+++++.+++|+||||||||+|++++|.+++.+|+.+..+++...|+|.....++.+|..++...|||+|+||+|++
T Consensus 268 ~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~ 347 (494)
T COG0464 268 FRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSL 347 (494)
T ss_pred HHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhh
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHc
Q 002961 501 GRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR 580 (862)
Q Consensus 501 ~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~ 580 (862)
...++...+ ...+.+++++|..|++.....+|+||++||.++.+|++++||||||..++|++|+.++|.+||+.++.
T Consensus 348 ~~~r~~~~~---~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 348 ASGRGPSED---GSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred hccCCCCCc---hHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 887754322 22256899999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC--CCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhC-CcccCHHHHHHHHHH
Q 002961 581 KKP--MADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG-RTEITTDDLLQAAQI 635 (862)
Q Consensus 581 ~~~--~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~-~~~It~edl~~Al~~ 635 (862)
... +..++++..++..++||+++||..+|++|...+.++. ...+|.+|+.+|+..
T Consensus 425 ~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 425 DKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREVTLDDFLDALKK 482 (494)
T ss_pred ccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHh
Confidence 543 4678999999999999999999999999999999988 778999999999875
No 29
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.8e-27 Score=249.73 Aligned_cols=216 Identities=40% Similarity=0.699 Sum_probs=202.3
Q ss_pred cccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHH
Q 002961 420 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 420 ~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~ 499 (862)
++.++++.+|.+++||||||+|||.++++++..++..++.+..+.+.+.|.|.....++..|..++...||++|+||||+
T Consensus 157 lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDA 236 (388)
T KOG0651|consen 157 LFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDA 236 (388)
T ss_pred hccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhh
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHH
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l 579 (862)
.++++...+.|.+.....+|..|+..|+++...+.|-+|+|||+++.|||+|+||||+|+.|..|.|+...|..|++.|.
T Consensus 237 igGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~ 316 (388)
T KOG0651|consen 237 IGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHV 316 (388)
T ss_pred hccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeecc
Confidence 99988444457778888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 002961 580 RKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 635 (862)
Q Consensus 580 ~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 635 (862)
........+|.+++.+..+|+.++|+.+.|.+|...+.+..+..+-.+|+..++..
T Consensus 317 ~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk 372 (388)
T KOG0651|consen 317 QPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHEDFMKLVRK 372 (388)
T ss_pred ccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHhHHHHHHHHHH
Confidence 88888888999999999999999999999999999999999989999999888763
No 30
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=9.2e-26 Score=235.05 Aligned_cols=187 Identities=35% Similarity=0.628 Sum_probs=167.8
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccC
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 506 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~ 506 (862)
.+=++|+|+||||||||.|++++|.+.+..|+.++.++++..|.|.....+..+|+.++.+.|+|+||||||++++.+..
T Consensus 164 ~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e 243 (439)
T KOG0739|consen 164 KPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE 243 (439)
T ss_pred CcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC
Confidence 34478999999999999999999999999999999999999999999999999999999999999999999999887643
Q ss_pred cCCCCchhHHHHHHHHHHhhccccC-CCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCCC-
Q 002961 507 IKGSGGQERDATLNQLLVCLDGFEG-RGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM- 584 (862)
Q Consensus 507 ~~~Sgge~~r~~l~~LL~~Ld~~~~-~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~~- 584 (862)
...+..|.+-..||..|.+.-. +.+++|+++||-|..||.+++| ||+..|++|.|+...|..+|+.|+...+.
T Consensus 244 ---nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~ 318 (439)
T KOG0739|consen 244 ---NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHV 318 (439)
T ss_pred ---CchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccc
Confidence 4456778888999999998754 4689999999999999999999 99999999999999999999999977643
Q ss_pred CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 002961 585 ADDVDYLAVASMTDGMVGAELANIVEVAAINMMR 618 (862)
Q Consensus 585 ~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~ 618 (862)
....|+..|+..|+||||+||.-+++.|...-.+
T Consensus 319 LT~~d~~eL~~kTeGySGsDisivVrDalmePvR 352 (439)
T KOG0739|consen 319 LTEQDFKELARKTEGYSGSDISIVVRDALMEPVR 352 (439)
T ss_pred cchhhHHHHHhhcCCCCcCceEEEehhhhhhhHH
Confidence 3567999999999999999999999888765544
No 31
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=7.9e-26 Score=243.64 Aligned_cols=189 Identities=37% Similarity=0.636 Sum_probs=176.6
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhcc
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 505 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~ 505 (862)
.+++.||+|+||||||||.|++++|.+.+..|+.++.+.+...++|...+.+..+|.-+....|+++||||+|++++.+.
T Consensus 124 l~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~ 203 (386)
T KOG0737|consen 124 LRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR 203 (386)
T ss_pred ccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999998872
Q ss_pred CcCCCCchhHHHHHHHHHHhhccccCCCc--EEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCC
Q 002961 506 LIKGSGGQERDATLNQLLVCLDGFEGRGN--VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP 583 (862)
Q Consensus 506 ~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~--vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~ 583 (862)
.+.+|..+.+-++|+...|++..+.+ |+|+++||+|..+|.+++| |+.+.++++.|+..+|.+||+..++...
T Consensus 204 ---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~ 278 (386)
T KOG0737|consen 204 ---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEK 278 (386)
T ss_pred ---cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccc
Confidence 46678888889999999999977655 9999999999999999999 9999999999999999999999999999
Q ss_pred CCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Q 002961 584 MADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 619 (862)
Q Consensus 584 ~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~ 619 (862)
+.+++|+..+|..|.||||.||.++|+.|+...+++
T Consensus 279 ~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 279 LEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred cCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 999999999999999999999999999998877654
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.93 E-value=3.6e-25 Score=254.88 Aligned_cols=233 Identities=35% Similarity=0.586 Sum_probs=179.5
Q ss_pred cccccccccCCeEEEECCCCCchhHHHHHHHhhccCc----------eeeeecccchhhhcccchhhHHHHHHHHHhc--
Q 002961 420 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN----------FFSISASQFVEIYVGVGASRVRSLYQEAKDN-- 487 (862)
Q Consensus 420 ~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~----------~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~-- 487 (862)
.+..+++.+|.+++|+||||||||++++++|+.++.+ ++.+....+...|.|.....++.+|+.++..
T Consensus 207 l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~ 286 (512)
T TIGR03689 207 LYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKAS 286 (512)
T ss_pred HHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhh
Confidence 4556888999999999999999999999999987543 4445556666778888888888899888763
Q ss_pred --CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCC
Q 002961 488 --APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPK 565 (862)
Q Consensus 488 --~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~ 565 (862)
.|+|+||||+|.++..++... .++..+..++.||..||++...++++||+|||+++.|||+++||||||.+|+|++
T Consensus 287 ~g~p~IIfIDEiD~L~~~R~~~~--s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~ 364 (512)
T TIGR03689 287 DGRPVIVFFDEMDSIFRTRGSGV--SSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIER 364 (512)
T ss_pred cCCCceEEEehhhhhhcccCCCc--cchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCC
Confidence 699999999999987664321 2233456789999999999888899999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHccC-CCC---------CcccHHHHH-----------------------------hhcCCCCHHHHH
Q 002961 566 PGLIGRMEILKVHARKK-PMA---------DDVDYLAVA-----------------------------SMTDGMVGAELA 606 (862)
Q Consensus 566 P~~~~R~~Il~~~l~~~-~~~---------~~~dl~~lA-----------------------------~~t~G~s~adI~ 606 (862)
|+.++|.+||+.++... ++. ...++..++ ..++.+||++|.
T Consensus 365 Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~ 444 (512)
T TIGR03689 365 PDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIA 444 (512)
T ss_pred CCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHH
Confidence 99999999999998642 221 111222221 125668999999
Q ss_pred HHHHHHHHHHHHh----CCcccCHHHHHHHHHHHhccc-cccccccccchhHH
Q 002961 607 NIVEVAAINMMRD----GRTEITTDDLLQAAQIEERGM-LDRKERSSETWRQV 654 (862)
Q Consensus 607 ~lv~~A~~~A~~~----~~~~It~edl~~Al~~~~~~~-~~~~~~~~~~~r~v 654 (862)
++|..|...|..+ +...|+.+|+..|+..+.... --+...+++.|-++
T Consensus 445 ~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~~~~~~~~~~w~~~ 497 (512)
T TIGR03689 445 NIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESEDLPNTTNPDDWARI 497 (512)
T ss_pred HHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccccCCCCCCHHHHhhh
Confidence 9999998888765 445899999999998665421 11233446666544
No 33
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.92 E-value=2.2e-24 Score=234.77 Aligned_cols=232 Identities=19% Similarity=0.220 Sum_probs=172.5
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHh-----cCCceeEhHHH
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKD-----NAPSVVFIDEL 497 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~-----~~p~iL~iDEi 497 (862)
..++++|.+++|+||||||||.++++||++++.+++.++.+++...|.|.....++.+|..+.. ..||+||||||
T Consensus 142 ~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEI 221 (413)
T PLN00020 142 LPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDL 221 (413)
T ss_pred ccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehh
Confidence 3678999999999999999999999999999999999999999999999999999999999875 46999999999
Q ss_pred HHhhhhccCcCCCCchhHHHHHHHHHHhhccc------------cCCCcEEEEEecCCCCCCCccccCCCCccccccCCC
Q 002961 498 DAVGRERGLIKGSGGQERDATLNQLLVCLDGF------------EGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPK 565 (862)
Q Consensus 498 d~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~------------~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~ 565 (862)
|++++.++. ..+.-..+.+...||..+|+. .....|+||+|||+++.|||+|+||||||..+ ..
T Consensus 222 DA~~g~r~~--~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~l 297 (413)
T PLN00020 222 DAGAGRFGT--TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WA 297 (413)
T ss_pred hhcCCCCCC--CCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CC
Confidence 999987752 122222344457888888752 23567999999999999999999999999875 47
Q ss_pred CCHHhHHHHHHHHHccCCCCCcccHHHHHhhcCC----CCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHhcccc
Q 002961 566 PGLIGRMEILKVHARKKPMADDVDYLAVASMTDG----MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGML 641 (862)
Q Consensus 566 P~~~~R~~Il~~~l~~~~~~~~~dl~~lA~~t~G----~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~~~~ 641 (862)
|+.++|.+||+.+++...+. ..++..|+..++| |.|+--..+..++......+ +..+.+-..+-....+
T Consensus 298 Pd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~----~g~~~~~~~l~~~~~~-- 370 (413)
T PLN00020 298 PTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAE----VGVENLGKKLVNSKKG-- 370 (413)
T ss_pred CCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHH----hhHHHHHHHHhcCCCC--
Confidence 99999999999999887665 5888899998887 45554444555444332221 2222332222111111
Q ss_pred ccccccccchhHHHHHHHHHHHHHH
Q 002961 642 DRKERSSETWRQVAINEAAMAVVAV 666 (862)
Q Consensus 642 ~~~~~~~~~~r~vA~hEaGHAlva~ 666 (862)
...-..-....-.+-|+||.++..
T Consensus 371 -~p~f~~~~~t~~~l~~~g~~l~~e 394 (413)
T PLN00020 371 -PPTFEPPKMTLEKLLEYGNMLVRE 394 (413)
T ss_pred -CCCCCCCCCCHHHHHHHHHHHHHH
Confidence 111112233455778888888753
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.2e-24 Score=238.63 Aligned_cols=245 Identities=32% Similarity=0.526 Sum_probs=196.6
Q ss_pred cccccccCCeEEEECCCCCchhHHHHHHHhhccC-ceeeeecccchhhhcccchhhHHHHHHHHHh--------cCCcee
Q 002961 422 RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-NFFSISASQFVEIYVGVGASRVRSLYQEAKD--------NAPSVV 492 (862)
Q Consensus 422 ~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~-~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~--------~~p~iL 492 (862)
..+|+..-.|++|+||||||||.+|+.|..-++. +--.++..+....|+|+....++.+|..+.. ..-.|+
T Consensus 249 e~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHII 328 (744)
T KOG0741|consen 249 EQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHII 328 (744)
T ss_pred HHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEE
Confidence 4889999999999999999999999999876642 2223577788889999999999999988743 123589
Q ss_pred EhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHH
Q 002961 493 FIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRM 572 (862)
Q Consensus 493 ~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~ 572 (862)
++||||+++.+|+..+++.| ..+.++|+||.-||+...-++++||+-||+.|.||.+|+|||||..++++..||...|.
T Consensus 329 IFDEiDAICKqRGS~~g~TG-VhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRl 407 (744)
T KOG0741|consen 329 IFDEIDAICKQRGSMAGSTG-VHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRL 407 (744)
T ss_pred EehhhHHHHHhcCCCCCCCC-ccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCce
Confidence 99999999999886554333 45668999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccC----CCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhC---------------CcccCHHHHHHHH
Q 002961 573 EILKVHARKK----PMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG---------------RTEITTDDLLQAA 633 (862)
Q Consensus 573 ~Il~~~l~~~----~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~---------------~~~It~edl~~Al 633 (862)
+|++.|.... .+..++|+.+||..|..|||++|+.+++.|...|..+. +-+|+.+|+..|+
T Consensus 408 QIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL 487 (744)
T KOG0741|consen 408 QILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNAL 487 (744)
T ss_pred EEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHH
Confidence 9999998643 57789999999999999999999999999988887651 2369999999999
Q ss_pred HHHhc--cccccc-------cccccchhHHHHHHHHHHHHHHh
Q 002961 634 QIEER--GMLDRK-------ERSSETWRQVAINEAAMAVVAVN 667 (862)
Q Consensus 634 ~~~~~--~~~~~~-------~~~~~~~r~vA~hEaGHAlva~l 667 (862)
+.... |..... -.-..-.....+.+-|.-+|+-.
T Consensus 488 ~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qv 530 (744)
T KOG0741|consen 488 EDVKPAFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQV 530 (744)
T ss_pred HhcCcccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHh
Confidence 83222 211100 00011123445677888887754
No 35
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.2e-23 Score=239.62 Aligned_cols=353 Identities=23% Similarity=0.294 Sum_probs=274.2
Q ss_pred hhhccCchhhhHH-------HHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002961 220 MLSTFRPKKESKR-------AAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKEEERRRKKEIRLQKYEESLQDA 292 (862)
Q Consensus 220 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~e~~a~~~el~~~e~~~~~~k~e~q~~~~~~~r~~~~~~kl~~~ 292 (862)
+++..+.+.|+++ ++++.+++.+++..++.+++..|++....||...++++.......+ +..+.+.+++...
T Consensus 184 iLe~~~v~~Rlek~l~~l~~ei~~~~~ek~I~~kVk~~meK~QREyyL~EQlKaIqkELG~~~d~~-~e~~~~~~kie~~ 262 (782)
T COG0466 184 ILETLDVKERLEKLLDLLEKEIDLLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGEDDDDK-DEVEELREKIEKL 262 (782)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccch-hHHHHHHHHHhhc
Confidence 6777778877554 5566789999999999999999999999998888888877665433 6889999999999
Q ss_pred HhHHHHHHHHHHHHhccccccccccceeeeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002961 293 RDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDE 372 (862)
Q Consensus 293 ~~~~k~l~~~~k~~ae~s~~~~~~~~~~~l~~Y~GnYs~y~~~ke~~e~~~~~~k~~e~~~~~i~~le~~l~~~e~~~e~ 372 (862)
...........++..+.+.+.+.++|+++++.|-.+..+.+|.+.. ....+..++.+ .|.+.+.++++.+++
T Consensus 263 ~~p~evk~k~~~El~kL~~m~~~SaE~~ViRnYlDwll~lPW~~~s-k~~~Dl~~a~~-------iLd~dHYGLekVKeR 334 (782)
T COG0466 263 KLPKEAKEKAEKELKKLETMSPMSAEATVIRNYLDWLLDLPWGKRS-KDKLDLKKAEK-------ILDKDHYGLEKVKER 334 (782)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhCCCcccc-chhhhHHHHHH-------HhcccccCchhHHHH
Confidence 9999999999999999999999999999999999999999999985 56666666666 888899999999998
Q ss_pred HhhccccCChhhhhhcccccccchhhhcccCCCccccccCccccccccccccccccCCeEEEECCCCCchhHHHHHHHhh
Q 002961 373 IEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 373 i~~~~~~~~~~l~~~~~~~~~~~~V~~~~~i~~~~l~~~~~s~~~~~~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
+.+.+..... ..-..+.-+||+||||+|||+|+++||..
T Consensus 335 IlEyLAV~~l-----------------------------------------~~~~kGpILcLVGPPGVGKTSLgkSIA~a 373 (782)
T COG0466 335 ILEYLAVQKL-----------------------------------------TKKLKGPILCLVGPPGVGKTSLGKSIAKA 373 (782)
T ss_pred HHHHHHHHHH-----------------------------------------hccCCCcEEEEECCCCCCchhHHHHHHHH
Confidence 8653322110 00112346799999999999999999999
Q ss_pred ccCceeeeecccchhh---------hcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHH
Q 002961 453 AGVNFFSISASQFVEI---------YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLL 523 (862)
Q Consensus 453 l~~~~~~i~~~~~~~~---------~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL 523 (862)
++..|+.++.+.+.+. |+|..++++-.-+..+...+| +++|||||.++.++.+. --..||
T Consensus 374 l~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGD----------PaSALL 442 (782)
T COG0466 374 LGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGD----------PASALL 442 (782)
T ss_pred hCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCC----------hHHHHH
Confidence 9999999999876543 899999988888888888888 79999999997654322 346677
Q ss_pred HhhccccC-------------CCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHcc-----CCCC
Q 002961 524 VCLDGFEG-------------RGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK-----KPMA 585 (862)
Q Consensus 524 ~~Ld~~~~-------------~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~-----~~~~ 585 (862)
+.||.-++ -++|+||+|+|..+.||.+|+. |+. +|.++.++.++..+|.+.|+-. +.+.
T Consensus 443 EVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~ 519 (782)
T COG0466 443 EVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLK 519 (782)
T ss_pred hhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCC
Confidence 77775332 2679999999999999999999 998 9999999999999999988732 2222
Q ss_pred ------CcccHHHHHhhcC---CC--CHHHHHHHHHHHHHHHHHhCCc---ccCHHHHHHHHHHH
Q 002961 586 ------DDVDYLAVASMTD---GM--VGAELANIVEVAAINMMRDGRT---EITTDDLLQAAQIE 636 (862)
Q Consensus 586 ------~~~dl~~lA~~t~---G~--s~adI~~lv~~A~~~A~~~~~~---~It~edl~~Al~~~ 636 (862)
.+..+..+.+.+. |. --+.|..+||.++..-...... .|+..++.+.+...
T Consensus 520 ~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~ 584 (782)
T COG0466 520 KGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGVP 584 (782)
T ss_pred ccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCCc
Confidence 1222333333222 21 1167778888777655543332 47888888887643
No 36
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.2e-23 Score=237.77 Aligned_cols=206 Identities=41% Similarity=0.657 Sum_probs=190.1
Q ss_pred ccccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcC-CceeEhHHH
Q 002961 419 DMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNA-PSVVFIDEL 497 (862)
Q Consensus 419 ~~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~-p~iL~iDEi 497 (862)
..+..+++++|.+++++||||+|||.+++++|++.+..+..+++.+++..|.|+..+.++..|+.+..+. |+++||||+
T Consensus 208 ~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEl 287 (693)
T KOG0730|consen 208 ALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDEL 287 (693)
T ss_pred hhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhH
Confidence 3455789999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred HHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHH
Q 002961 498 DAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKV 577 (862)
Q Consensus 498 d~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~ 577 (862)
|.+++++... .+ ..+.+..+++..||+..+.++++|+++||+++.||++++| ||||+.+.+..|+..+|.+|++.
T Consensus 288 d~l~p~r~~~---~~-~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~ 362 (693)
T KOG0730|consen 288 DALCPKREGA---DD-VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRV 362 (693)
T ss_pred hhhCCccccc---ch-HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHH
Confidence 9999876432 22 4556888999999999988999999999999999999999 99999999999999999999999
Q ss_pred HHccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 578 HARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 578 ~l~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
+....+..++.++..+|..+.||.|+|+..+|+.|...+.++ +.+++..|..
T Consensus 363 l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~~~~A~~ 414 (693)
T KOG0730|consen 363 LTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEIFQEALM 414 (693)
T ss_pred HHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHHHHHHHh
Confidence 999998888899999999999999999999999999988877 7788888876
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.89 E-value=1.8e-22 Score=246.23 Aligned_cols=213 Identities=47% Similarity=0.797 Sum_probs=187.5
Q ss_pred ccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHh
Q 002961 421 YRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAV 500 (862)
Q Consensus 421 ~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l 500 (862)
+..+++.+|.+++|+||||||||+|+++||+.++.+++.+++..+...|.|.....++.+|+.+....|+++||||+|.+
T Consensus 204 ~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l 283 (733)
T TIGR01243 204 FEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAI 283 (733)
T ss_pred HHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhh
Confidence 34678889999999999999999999999999999999999988888888888888899999999999999999999999
Q ss_pred hhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHc
Q 002961 501 GRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR 580 (862)
Q Consensus 501 ~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~ 580 (862)
...+.. ..++..+.+++.|+..|+++...+.++||++||.++.+|++++++|||++.+.++.|+.++|.+||+.+.+
T Consensus 284 ~~~r~~---~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~ 360 (733)
T TIGR01243 284 APKREE---VTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR 360 (733)
T ss_pred cccccC---CcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc
Confidence 876532 23444456788999999999888899999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhC-------------------CcccCHHHHHHHHHHH
Q 002961 581 KKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG-------------------RTEITTDDLLQAAQIE 636 (862)
Q Consensus 581 ~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~-------------------~~~It~edl~~Al~~~ 636 (862)
...+..+.++..++..+.||+++|+..+++.|+..+.++. ...++.+|+..|+...
T Consensus 361 ~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v 435 (733)
T TIGR01243 361 NMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMV 435 (733)
T ss_pred CCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhc
Confidence 8888888999999999999999999999999987776541 1247888998888743
No 38
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1e-21 Score=224.29 Aligned_cols=298 Identities=21% Similarity=0.311 Sum_probs=232.2
Q ss_pred hhhccCchhhhHHHHHH-------HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002961 220 MLSTFRPKKESKRAAEI-------RRAREELKRQRKEELEKMREESEMMEKAMDMQKKEEERRRKKEIRLQKYEESLQDA 292 (862)
Q Consensus 220 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~e~~a~~~el~~~e~~~~~~k~e~q~~~~~~~r~~~~~~kl~~~ 292 (862)
|++.++..+|+++++++ .++++++...++......+++.-..+|-..+.++...+...+.....++.+++...
T Consensus 271 vL~~~di~~Rl~~al~llkke~e~~klq~ki~k~vE~k~~~~~r~ylL~eQlk~IKkeLg~e~Ddkd~~~~~~~er~~~~ 350 (906)
T KOG2004|consen 271 VLEETDIEKRLEKALELLKKELELAKLQQKIGKEVEEKIKQDHREYLLREQLKAIKKELGIEKDDKDALVEKFRERIKSL 350 (906)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHhhCCCccchhhHHHHHHHHhhhc
Confidence 88899999986665555 46677777777777776666665555544444444444445555777888888887
Q ss_pred HhHHHHHHHHHHHHhccccccccccceeeeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002961 293 RDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDE 372 (862)
Q Consensus 293 ~~~~k~l~~~~k~~ae~s~~~~~~~~~~~l~~Y~GnYs~y~~~ke~~e~~~~~~k~~e~~~~~i~~le~~l~~~e~~~e~ 372 (862)
.....++....++..+....-+.++++++.+.|-.+.+..+|.+-. .+..+..++.+ .+.+.+++++..+++
T Consensus 351 ~~P~~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~S-~En~dl~~Ak~-------iLdeDHYgm~dVKeR 422 (906)
T KOG2004|consen 351 KMPDHVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKSS-TENLDLARAKE-------ILDEDHYGMEDVKER 422 (906)
T ss_pred cCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhCCCCCCC-hhhhhHHHHHH-------hhcccccchHHHHHH
Confidence 8888888888888888888888899999999999999999999986 44666666666 888899999999888
Q ss_pred HhhccccCChhhhhhcccccccchhhhcccCCCccccccCccccccccccccccccCCeEEEECCCCCchhHHHHHHHhh
Q 002961 373 IEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 373 i~~~~~~~~~~l~~~~~~~~~~~~V~~~~~i~~~~l~~~~~s~~~~~~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
+.+.+.+.. + .+-..+.-+||+||||+|||+++++||..
T Consensus 423 ILEfiAV~k--------------------------L---------------rgs~qGkIlCf~GPPGVGKTSI~kSIA~A 461 (906)
T KOG2004|consen 423 ILEFIAVGK--------------------------L---------------RGSVQGKILCFVGPPGVGKTSIAKSIARA 461 (906)
T ss_pred HHHHHHHHh--------------------------h---------------cccCCCcEEEEeCCCCCCcccHHHHHHHH
Confidence 755322111 0 12234556899999999999999999999
Q ss_pred ccCceeeeecccchhh---------hcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHH
Q 002961 453 AGVNFFSISASQFVEI---------YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLL 523 (862)
Q Consensus 453 l~~~~~~i~~~~~~~~---------~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL 523 (862)
++..|+.++.+.+.+. |+|..++++-..+..+...+| +++|||||.++.. .. |+ --+.||
T Consensus 462 LnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g--~q----GD----PasALL 530 (906)
T KOG2004|consen 462 LNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSG--HQ----GD----PASALL 530 (906)
T ss_pred hCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCC--CC----CC----hHHHHH
Confidence 9999999998876543 999999999889999988999 7899999999732 11 11 335667
Q ss_pred HhhccccC-------------CCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHc
Q 002961 524 VCLDGFEG-------------RGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR 580 (862)
Q Consensus 524 ~~Ld~~~~-------------~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~ 580 (862)
+.||.-++ -++|++|||.|..+.||++|+. |+. +|.++.+..++...|.+.|+-
T Consensus 531 ElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 531 ELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred HhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 76664322 2579999999999999999999 997 899999999999999998873
No 39
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.2e-21 Score=235.19 Aligned_cols=202 Identities=36% Similarity=0.655 Sum_probs=172.2
Q ss_pred cccccccccccccCCeEEEECCCCCchhHHHHHHHhhcc-----CceeeeecccchhhhcccchhhHHHHHHHHHhcCCc
Q 002961 416 KFSDMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG-----VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPS 490 (862)
Q Consensus 416 ~~~~~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~-----~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~ 490 (862)
.|...|.++++.+|+||+++||||||||..++++|+.+. ..++.-...+....|+|.....++.+|+.++...|+
T Consensus 286 lyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qPS 365 (1080)
T KOG0732|consen 286 LYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPS 365 (1080)
T ss_pred hhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhccCce
Confidence 455567799999999999999999999999999999873 333344555666678999888899999999999999
Q ss_pred eeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHh
Q 002961 491 VVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIG 570 (862)
Q Consensus 491 iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~ 570 (862)
|+|+||||.+++-+.. -..+.+..++..||..||++..++.|+||+|||+++.+||+|+||||||+.++|+.|+.+.
T Consensus 366 IIffdeIdGlapvrSs---kqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~a 442 (1080)
T KOG0732|consen 366 IIFFDEIDGLAPVRSS---KQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDA 442 (1080)
T ss_pred EEeccccccccccccc---hHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHH
Confidence 9999999998876521 1233445688899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCC-CCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhC
Q 002961 571 RMEILKVHARKKP-MADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG 620 (862)
Q Consensus 571 R~~Il~~~l~~~~-~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~ 620 (862)
|..|+..+.++-. .....-+..+|..+.||.|+||..+|.+|++.+.++.
T Consensus 443 r~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~ 493 (1080)
T KOG0732|consen 443 RAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRS 493 (1080)
T ss_pred HHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Confidence 9999999986543 2233456789999999999999999999999998763
No 40
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.85 E-value=3e-20 Score=227.52 Aligned_cols=352 Identities=24% Similarity=0.303 Sum_probs=242.5
Q ss_pred hhhccCchhh-------hHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002961 220 MLSTFRPKKE-------SKRAAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKEEERRRKKEIRLQKYEESLQDA 292 (862)
Q Consensus 220 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~e~~a~~~el~~~e~~~~~~k~e~q~~~~~~~r~~~~~~kl~~~ 292 (862)
+++..+++.+ +++++++.+++.+++.+++.+++..|++....+|...++++..... ...+..+++.+++.+.
T Consensus 181 LLE~~d~~~RL~~l~~lL~~ele~l~l~~~I~~~v~~~~~~~qr~~~Lreqlk~i~~eLg~~~-~~~~~~~~~~~k~~~~ 259 (775)
T TIGR00763 181 VLETVNIEKRLKKALELLKKELELLKLQNKITKKVEEKMEKTQREYYLREQLKAIKKELGIEK-DDKDELEKLKEKLEEL 259 (775)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CchhHHHHHHHHHHhc
Confidence 4444455555 6678888899999999999999999999999887777666655432 2334678999999999
Q ss_pred HhHHHHHHHHHHHHhccccccccccceeeeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002961 293 RDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDE 372 (862)
Q Consensus 293 ~~~~k~l~~~~k~~ae~s~~~~~~~~~~~l~~Y~GnYs~y~~~ke~~e~~~~~~k~~e~~~~~i~~le~~l~~~e~~~e~ 372 (862)
...+.+.....++..+.....+.++++++++.|-......+|.+... ...+.....+ .+.+.+.+.+...++
T Consensus 260 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~yl~~~~~ip~~~~~~-~~~~~~~~~~-------~l~~~~~G~~~~k~~ 331 (775)
T TIGR00763 260 KLPEEVKKVIEKELTKLSLLEPSSSEFTVTRNYLDWLTDLPWGKYSK-ENLDLKRAKE-------ILDEDHYGLKKVKER 331 (775)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHCCCCccccc-chhhHHHHHH-------HhhhhcCChHHHHHH
Confidence 99999999999999999999999999999999999999988887632 2333333333 444445555554444
Q ss_pred HhhccccCChhhhhhcccccccchhhhcccCCCccccccCccccccccccccccccCCeEEEECCCCCchhHHHHHHHhh
Q 002961 373 IEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 373 i~~~~~~~~~~l~~~~~~~~~~~~V~~~~~i~~~~l~~~~~s~~~~~~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
+...... . . + .+...+..++|+||||||||+++++||+.
T Consensus 332 i~~~~~~-------~--------~-----------~---------------~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 332 ILEYLAV-------Q--------K-----------L---------------RGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred HHHHHHH-------H--------H-----------h---------------hcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4221000 0 0 0 00012236899999999999999999999
Q ss_pred ccCceeeeecccchh---------hhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHH
Q 002961 453 AGVNFFSISASQFVE---------IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLL 523 (862)
Q Consensus 453 l~~~~~~i~~~~~~~---------~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL 523 (862)
++.+++.++++.... .|.|...+.+...|..+...+| +++|||||.+.... .++ ..+.|+
T Consensus 371 l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~------~~~----~~~aLl 439 (775)
T TIGR00763 371 LNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSF------RGD----PASALL 439 (775)
T ss_pred hcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCcc------CCC----HHHHHH
Confidence 999999998765322 3667666667677776655666 89999999997532 111 235566
Q ss_pred Hhhcc-----cc--------CCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHc-----cCCCC
Q 002961 524 VCLDG-----FE--------GRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR-----KKPMA 585 (862)
Q Consensus 524 ~~Ld~-----~~--------~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~-----~~~~~ 585 (862)
..||. +. +.+++++|+|||..+.++++|++ ||+ +|.|+.|+.+++..|++.++. ...+.
T Consensus 440 ~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~ 516 (775)
T TIGR00763 440 EVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLK 516 (775)
T ss_pred HhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 66653 11 12578999999999999999999 996 789999999999999988762 11221
Q ss_pred ------CcccHHHHHhh-cCCCCHHH----HHHHHHHHHHHHHHhCC--------cccCHHHHHHHHHH
Q 002961 586 ------DDVDYLAVASM-TDGMVGAE----LANIVEVAAINMMRDGR--------TEITTDDLLQAAQI 635 (862)
Q Consensus 586 ------~~~dl~~lA~~-t~G~s~ad----I~~lv~~A~~~A~~~~~--------~~It~edl~~Al~~ 635 (862)
++..+..++.. +..+..+. |..+|+.++......+. ..|+.+++...+..
T Consensus 517 ~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg~ 585 (775)
T TIGR00763 517 PDELKITDEALLLLIKYYTREAGVRNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLGK 585 (775)
T ss_pred cceEEECHHHHHHHHHhcChhcCChHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcCc
Confidence 22234445543 22333344 44555555443332222 36788888777653
No 41
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=6.4e-21 Score=212.71 Aligned_cols=185 Identities=36% Similarity=0.583 Sum_probs=163.8
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccCc
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLI 507 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~ 507 (862)
++++++|.||||+|||.|+++||.+.+..+..++.+.+...|+|.....++.+|.-++...|+|+||||+|.+...+
T Consensus 185 p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R--- 261 (428)
T KOG0740|consen 185 PVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR--- 261 (428)
T ss_pred ccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc---
Confidence 34679999999999999999999999999999999999999999998889999999999999999999999998887
Q ss_pred CCCCchhHHHHHHHHHHhhcccc--CCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccC-CC
Q 002961 508 KGSGGQERDATLNQLLVCLDGFE--GRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK-PM 584 (862)
Q Consensus 508 ~~Sgge~~r~~l~~LL~~Ld~~~--~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~-~~ 584 (862)
.+...+..+.....+|..+++.. ..++|+||+|||.|+.+|.+++| ||..++++|.|+.+.|..+|...+.+. ..
T Consensus 262 s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~ 339 (428)
T KOG0740|consen 262 SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNG 339 (428)
T ss_pred CCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCC
Confidence 33455666667777777777654 34589999999999999999999 999999999999999999999999876 34
Q ss_pred CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 002961 585 ADDVDYLAVASMTDGMVGAELANIVEVAAINMM 617 (862)
Q Consensus 585 ~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~ 617 (862)
..+.++..+++.|+||++.||.++|..|+.--.
T Consensus 340 l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~ 372 (428)
T KOG0740|consen 340 LSDLDISLLAKVTEGYSGSDITALCKEAAMGPL 372 (428)
T ss_pred ccHHHHHHHHHHhcCcccccHHHHHHHhhcCch
Confidence 456889999999999999999999999875433
No 42
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.81 E-value=2.7e-19 Score=217.47 Aligned_cols=352 Identities=19% Similarity=0.243 Sum_probs=250.6
Q ss_pred hhhccCchhh-------hHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002961 220 MLSTFRPKKE-------SKRAAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKEEERRRKKEIRLQKYEESLQDA 292 (862)
Q Consensus 220 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~e~~a~~~el~~~e~~~~~~k~e~q~~~~~~~r~~~~~~kl~~~ 292 (862)
+++..+++.| +++++++.+++.+++.+++.+++..|++....+|...++++..+.. ...+..+++.+++.+.
T Consensus 183 LLE~~d~~eRLe~Ll~lL~~Eleil~l~~~I~~~v~~~~~k~q~e~~lreq~~~i~~elg~~~-~~~~~~~~~~~~~~~~ 261 (784)
T PRK10787 183 VLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD-DAPDENEALKRKIDAA 261 (784)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhhhhcccccCCC-cchhHHHHHHHHHHhc
Confidence 6777777777 6678888899999999999999999999999887777666665432 2334678899999999
Q ss_pred HhHHHHHHHHHHHHhccccccccccceeeeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002961 293 RDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDE 372 (862)
Q Consensus 293 ~~~~k~l~~~~k~~ae~s~~~~~~~~~~~l~~Y~GnYs~y~~~ke~~e~~~~~~k~~e~~~~~i~~le~~l~~~e~~~e~ 372 (862)
...++......++..+.....+.++|+++++.|-.+..+.+|.+.. ....+..++++ .+.+.+.++++.+++
T Consensus 262 ~~~~~~~~~~~~e~~~~~~~~~~~~e~~~~~~yl~~~~~~pw~~~~-~~~~~~~~~~~-------~l~~~~~g~~~vK~~ 333 (784)
T PRK10787 262 KMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARS-KVKKDLRQAQE-------ILDTDHYGLERVKDR 333 (784)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHhCCCCCCC-cccccHHHHHH-------HhhhhccCHHHHHHH
Confidence 9999999999999999999999999999999999999999998874 34455555555 677778888887777
Q ss_pred HhhccccCChhhhhhcccccccchhhhcccCCCccccccCccccccccccccccccCCeEEEECCCCCchhHHHHHHHhh
Q 002961 373 IEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 373 i~~~~~~~~~~l~~~~~~~~~~~~V~~~~~i~~~~l~~~~~s~~~~~~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
+....... .. .+-..+..++|+||||+||||+++.|++.
T Consensus 334 i~~~l~~~--------------~~---------------------------~~~~~g~~i~l~GppG~GKTtl~~~ia~~ 372 (784)
T PRK10787 334 ILEYLAVQ--------------SR---------------------------VNKIKGPILCLVGPPGVGKTSLGQSIAKA 372 (784)
T ss_pred HHHHHHHH--------------Hh---------------------------cccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 64311100 00 00123446899999999999999999999
Q ss_pred ccCceeeeecccchh---------hhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHH
Q 002961 453 AGVNFFSISASQFVE---------IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLL 523 (862)
Q Consensus 453 l~~~~~~i~~~~~~~---------~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL 523 (862)
++.+++.++++.... .|.|...+.+...+..+...+| +++|||+|.+...... . ..+.|+
T Consensus 373 l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g------~----~~~aLl 441 (784)
T PRK10787 373 TGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG------D----PASALL 441 (784)
T ss_pred hCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC------C----HHHHHH
Confidence 999999998776432 2555555555444554443455 8999999998654211 1 356677
Q ss_pred Hhhcc-----cc--------CCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccC-----CCC
Q 002961 524 VCLDG-----FE--------GRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK-----PMA 585 (862)
Q Consensus 524 ~~Ld~-----~~--------~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~-----~~~ 585 (862)
..+|. +. +-+++++|+|+|.. .|+++|++ ||+ +|.++.++.++..+|++.++... ...
T Consensus 442 evld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~ 517 (784)
T PRK10787 442 EVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALK 517 (784)
T ss_pred HHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCC
Confidence 77763 11 22689999999987 59999999 996 79999999999999999888421 111
Q ss_pred ------CcccHHHHHh-hcCCCCHHHHHH----HHHHHHHHHHHhCC---cccCHHHHHHHHHHH
Q 002961 586 ------DDVDYLAVAS-MTDGMVGAELAN----IVEVAAINMMRDGR---TEITTDDLLQAAQIE 636 (862)
Q Consensus 586 ------~~~dl~~lA~-~t~G~s~adI~~----lv~~A~~~A~~~~~---~~It~edl~~Al~~~ 636 (862)
.+..+..++. .+..+-.+.|+. +|+.++......+. ..|+.+++.+.+...
T Consensus 518 ~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~~ 582 (784)
T PRK10787 518 KGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQ 582 (784)
T ss_pred CCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCCC
Confidence 1122334443 222333345554 44444333332322 368899988887643
No 43
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=4.4e-17 Score=176.41 Aligned_cols=199 Identities=25% Similarity=0.387 Sum_probs=149.5
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCc-eeEhHHHHHhhhhccC
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPS-VVFIDELDAVGRERGL 506 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~-iL~iDEid~l~~~~~~ 506 (862)
+-++|++|||||||||.+++-||...|.++-.++.++ +...-.+....+..+|+++.....+ +|||||.|.|+..+..
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGD-VAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk 461 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGD-VAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK 461 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCC-ccccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch
Confidence 3467999999999999999999999998887777776 3334445666789999999876654 5899999999877643
Q ss_pred cCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCCCC-
Q 002961 507 IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA- 585 (862)
Q Consensus 507 ~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~~~- 585 (862)
. -..+-.|..||.||-.-- ..+..++++.+||.|..+|.++-. |||.+|+||+|..++|..||..|+.++...
T Consensus 462 t--ymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~ 535 (630)
T KOG0742|consen 462 T--YMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKP 535 (630)
T ss_pred h--hhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCc
Confidence 2 244667789999983322 334579999999999999999998 999999999999999999999998654210
Q ss_pred --------------------------CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 002961 586 --------------------------DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 633 (862)
Q Consensus 586 --------------------------~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al 633 (862)
.+..+...|..|.||||++|..|+--....+.-+....++...+.+.+
T Consensus 536 ~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavYgsedcvLd~~lf~e~v 609 (630)
T KOG0742|consen 536 ATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVYGSEDCVLDEALFDERV 609 (630)
T ss_pred CCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Confidence 011245678899999999999998644333333333444544444433
No 44
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.71 E-value=2.3e-17 Score=157.38 Aligned_cols=130 Identities=45% Similarity=0.718 Sum_probs=114.3
Q ss_pred EEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcC-CceeEhHHHHHhhhhccCcCCC
Q 002961 432 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNA-PSVVFIDELDAVGRERGLIKGS 510 (862)
Q Consensus 432 vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~-p~iL~iDEid~l~~~~~~~~~S 510 (862)
|+|+||||+|||++++.++..++.+++.++++.+...+.+.....+..+|..+.... |++++|||+|.+.... ..+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---STS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---ccc
Confidence 689999999999999999999999999999999887778888888999999998887 9999999999998775 234
Q ss_pred CchhHHHHHHHHHHhhccccCC-CcEEEEEecCCCCCCCccccCCCCccccccCCC
Q 002961 511 GGQERDATLNQLLVCLDGFEGR-GNVITIASTNRPDILDPALVRPGRFDRKIFIPK 565 (862)
Q Consensus 511 gge~~r~~l~~LL~~Ld~~~~~-~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~ 565 (862)
........++.|+..++..... .+++||++||.++.+++.+++ +||+..|++|.
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 5566677889999999987765 569999999999999999998 89999998873
No 45
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.2e-17 Score=180.94 Aligned_cols=200 Identities=24% Similarity=0.366 Sum_probs=144.4
Q ss_pred cccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHH
Q 002961 420 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 420 ~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~ 499 (862)
-|.+.|....+|.||+||||||||+++-|||+.++.+++-++.++.. .... ++.++-.. .+.+||+|++||.
T Consensus 226 ~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~-----~n~d-Lr~LL~~t--~~kSIivIEDIDc 297 (457)
T KOG0743|consen 226 FYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK-----LDSD-LRHLLLAT--PNKSILLIEDIDC 297 (457)
T ss_pred HHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc-----CcHH-HHHHHHhC--CCCcEEEEeeccc
Confidence 35678889999999999999999999999999999999988877632 2222 56655443 3447999999998
Q ss_pred hhhhccCcCC--CCc--hhHHHHHHHHHHhhccccCCC--cEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHH
Q 002961 500 VGRERGLIKG--SGG--QERDATLNQLLVCLDGFEGRG--NVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRME 573 (862)
Q Consensus 500 l~~~~~~~~~--Sgg--e~~r~~l~~LL~~Ld~~~~~~--~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~ 573 (862)
...-+.-... .+. ...+.++..||..+|++.... .-++|.|||+.+.|||||+||||+|.+|+++.-+...-..
T Consensus 298 s~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~ 377 (457)
T KOG0743|consen 298 SFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKT 377 (457)
T ss_pred ccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHH
Confidence 7442221111 111 245679999999999988755 6799999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCCcccHHHHHhhcCC--CCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 002961 574 ILKVHARKKPMADDVDYLAVASMTDG--MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 635 (862)
Q Consensus 574 Il~~~l~~~~~~~~~dl~~lA~~t~G--~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 635 (862)
++..++.... +..-+..+.....+ .|||++...+ ...+....+..+.+.+++..
T Consensus 378 La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~l------m~~~~dad~~lk~Lv~~l~~ 433 (457)
T KOG0743|consen 378 LASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEEL------MKNKNDADVALKGLVEALES 433 (457)
T ss_pred HHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHH------hhccccHHHHHHHHHHHHHh
Confidence 9999986432 22334444444443 5899885432 11111334555556666553
No 46
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.67 E-value=5.2e-16 Score=180.80 Aligned_cols=214 Identities=21% Similarity=0.209 Sum_probs=145.7
Q ss_pred eeeeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhh---hhhHhhc--cccCCh-
Q 002961 319 VFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELE----------GLEGA---DDEIEQG--EAEQNP- 382 (862)
Q Consensus 319 ~~~l~~Y~GnYs~y~~~ke~~e~~~~~~k~~e~~~~~i~~le~~l~----------~~e~~---~e~i~~~--~~~~~~- 382 (862)
...++.|.|||+.|.++|+ ++..+..+.++.+++++++++.-++ +++.+ .+++... ...+..
T Consensus 225 ~g~l~~y~Gny~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~ 302 (530)
T COG0488 225 RGKLTPYKGNYSSYLEQKA--ERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEE 302 (530)
T ss_pred CCceeEecCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccc
Confidence 4467789999999999999 5555555555555666555555211 11111 2222210 000110
Q ss_pred hhhhhcccccccchhhhcccCCCccccccCcccccccc---c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCce
Q 002961 383 HLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDM---Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF 457 (862)
Q Consensus 383 ~l~~~~~~~~~~~~V~~~~~i~~~~l~~~~~s~~~~~~---~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~ 457 (862)
...+.+.+...+. ..+..++.++++++.|++. + .++.+.++.+|.|+||||+|||||++.|+|.+++..
T Consensus 303 ~~~~~~~f~~~~~------~~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~ 376 (530)
T COG0488 303 GKPLAFRFPPPGK------RLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLS 376 (530)
T ss_pred cccceeeccCCcc------cCCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCC
Confidence 0001111111111 2445558899999999653 3 388889999999999999999999999999999888
Q ss_pred eeeecccchh-hhcccchhhH---HHHHHHHHhcCCceeEhHHHHHhhhhccCcCC---------CCchhHHHHHHHHHH
Q 002961 458 FSISASQFVE-IYVGVGASRV---RSLYQEAKDNAPSVVFIDELDAVGRERGLIKG---------SGGQERDATLNQLLV 524 (862)
Q Consensus 458 ~~i~~~~~~~-~~~gq~~~~l---~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~---------Sgge~~r~~l~~LL~ 524 (862)
|.+.++..+. .|++|....+ ..+++.+....|... --+++.++++++|.++ |||++.|..++.++
T Consensus 377 G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~-e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll- 454 (530)
T COG0488 377 GTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGD-EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLL- 454 (530)
T ss_pred ceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCcccc-HHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHh-
Confidence 9888776443 4888877544 378888888887643 6678899999888766 99999999999998
Q ss_pred hhccccCCCcEEEEEecCCCCC
Q 002961 525 CLDGFEGRGNVITIASTNRPDI 546 (862)
Q Consensus 525 ~Ld~~~~~~~vlvI~tTN~~~~ 546 (862)
..+++-+++..+||+.|.
T Consensus 455 ----~~~pNvLiLDEPTNhLDi 472 (530)
T COG0488 455 ----LQPPNLLLLDEPTNHLDI 472 (530)
T ss_pred ----ccCCCEEEEcCCCccCCH
Confidence 444445566799999775
No 47
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5.3e-16 Score=164.43 Aligned_cols=206 Identities=24% Similarity=0.279 Sum_probs=154.6
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc---------cCceeeeecccchhhhcccchhhHHHHHHHHHhc---CCc--eeE
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA---------GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDN---APS--VVF 493 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l---------~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~---~p~--iL~ 493 (862)
..+-|+|+||||||||+|+|+||..+ ....+++++..+...|++...+.+..+|+.+... ..+ .++
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34558999999999999999999976 3456788888888889999888888888877643 222 378
Q ss_pred hHHHHHhhhhccC-cCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHH
Q 002961 494 IDELDAVGRERGL-IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRM 572 (862)
Q Consensus 494 iDEid~l~~~~~~-~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~ 572 (862)
|||+++++..|.. .+++...-.-.++|.+|..||.+....+|++++|+|..+.||.++.. |-|-+.++.+|+...+.
T Consensus 256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~ 333 (423)
T KOG0744|consen 256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIY 333 (423)
T ss_pred eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHH
Confidence 9999999776532 22222222334789999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHccCC---C----------CCc-----ccHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 002961 573 EILKVHARKKP---M----------ADD-----VDYLAVAS-MTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 633 (862)
Q Consensus 573 ~Il~~~l~~~~---~----------~~~-----~dl~~lA~-~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al 633 (862)
+|++..+.+.. + ... .....++. .+.|.||+.|+.+=-.|. |..-....|+.+++..|+
T Consensus 334 ~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~Lah--a~y~~~~~v~~~~fl~al 411 (423)
T KOG0744|consen 334 EILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPLLAH--AEYFRTFTVDLSNFLLAL 411 (423)
T ss_pred HHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhhHHHH--HhccCCCccChHHHHHHH
Confidence 99998874421 0 011 11122222 258999999987765553 334455679999998887
Q ss_pred HHHh
Q 002961 634 QIEE 637 (862)
Q Consensus 634 ~~~~ 637 (862)
-...
T Consensus 412 ~ea~ 415 (423)
T KOG0744|consen 412 LEAA 415 (423)
T ss_pred HHHH
Confidence 6443
No 48
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=4.6e-15 Score=170.06 Aligned_cols=208 Identities=25% Similarity=0.286 Sum_probs=157.4
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhcc----CceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhh
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEAG----VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l~----~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~ 501 (862)
+..+..|+|.||+|+|||+|+++|+.++. ..+..++|+.+...-+......+..+|..+.++.|+|+++|++|.+.
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~ 507 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLA 507 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhh
Confidence 34457799999999999999999999874 34556677765544444445556889999999999999999999997
Q ss_pred hhccCcCCCCchhHHHHHHHHH-HhhccccC-CCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHH
Q 002961 502 RERGLIKGSGGQERDATLNQLL-VCLDGFEG-RGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 502 ~~~~~~~~Sgge~~r~~l~~LL-~~Ld~~~~-~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l 579 (862)
+..+. .++........++.++ +.+..+.. +..+.||++.+....|+|.|.+|++|+.++.+|.|+..+|.+||+..+
T Consensus 508 ~~s~~-e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~ 586 (952)
T KOG0735|consen 508 SASSN-ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIF 586 (952)
T ss_pred ccCcc-cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHH
Confidence 62211 1121122223344444 33444433 345789999999999999999999999999999999999999999999
Q ss_pred ccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh----CCcccCHHHHHHHHH
Q 002961 580 RKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRD----GRTEITTDDLLQAAQ 634 (862)
Q Consensus 580 ~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~----~~~~It~edl~~Al~ 634 (862)
.+.... ..-|++-++..|+||...|+..++.+|...|... +...+|.+++..++.
T Consensus 587 s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~ 646 (952)
T KOG0735|consen 587 SKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLK 646 (952)
T ss_pred HhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHH
Confidence 876522 1224445999999999999999999998877732 333789999999998
No 49
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.56 E-value=2.8e-13 Score=167.46 Aligned_cols=324 Identities=19% Similarity=0.272 Sum_probs=191.1
Q ss_pred ccCchhhhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHH
Q 002961 223 TFRPKKESKRAAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKEEERRRKKEI-----RLQKYEESLQDARDNYR 297 (862)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~el~~~e~~~~~~k~e~q~~~~~~~-----r~~~~~~kl~~~~~~~k 297 (862)
++.++.-+.+|++++..-.. .++.+....|+.++.+++.+...+.+.+.+..+.+ |+++..+++.+......
T Consensus 380 y~~~~~~pdkAi~LiD~aaa---~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~ 456 (857)
T PRK10865 380 YIADRQLPDKAIDLIDEAAS---SIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYS 456 (857)
T ss_pred cccCCCCChHHHHHHHHHhc---ccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44566668888888765444 34566778888888888888888888777755432 44666777777777777
Q ss_pred HHHHHHHHHhccccccccccceeeeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhcc
Q 002961 298 YMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGE 377 (862)
Q Consensus 298 ~l~~~~k~~ae~s~~~~~~~~~~~l~~Y~GnYs~y~~~ke~~e~~~~~~k~~e~~~~~i~~le~~l~~~e~~~e~i~~~~ 377 (862)
.+...|+...+........ ...++.+....+.+++........+.+...+..+++.+..++....
T Consensus 457 ~L~eq~k~~k~el~~~~~~---------~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 521 (857)
T PRK10865 457 ELEEEWKAEKASLSGTQTI---------KAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEG------ 521 (857)
T ss_pred HHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhc------
Confidence 7888888776544331111 1111111111111111111111222222223333333322211110
Q ss_pred ccCChhhhhhcccccccchhhhcccCCCccccccCccc------c----c-cc------c---c--ccccccc---C-Ce
Q 002961 378 AEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDV------K----F-SD------M---Y--RRRGVRI---P-GG 431 (862)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~V~~~~~i~~~~l~~~~~s~------~----~-~~------~---~--~~l~i~~---~-~~ 431 (862)
.....+...++...+..+|.+|+|+|+..+...+... . + +. . . ...++.. | ..
T Consensus 522 -~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~ 600 (857)
T PRK10865 522 -KTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGS 600 (857)
T ss_pred -cccccccCccCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCce
Confidence 0111222345556678899999999998655332111 0 1 11 0 0 0122222 2 35
Q ss_pred EEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh-----hcccchhh-----HHHHHHHHHhcCCceeEhHHHH
Q 002961 432 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASR-----VRSLYQEAKDNAPSVVFIDELD 498 (862)
Q Consensus 432 vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~-----~~gq~~~~-----l~~~f~~a~~~~p~iL~iDEid 498 (862)
++|+||+|||||+++++|+..+ +.+++.++++.+... .+|..... -..+...++..+.++++|||++
T Consensus 601 ~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEie 680 (857)
T PRK10865 601 FLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVE 680 (857)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehh
Confidence 8899999999999999999876 346788887765432 12211111 1223444455566899999999
Q ss_pred HhhhhccCcCCCCchhHHHHHHHHHHhhccc--c-------CCCcEEEEEecCCC-------------------------
Q 002961 499 AVGRERGLIKGSGGQERDATLNQLLVCLDGF--E-------GRGNVITIASTNRP------------------------- 544 (862)
Q Consensus 499 ~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~--~-------~~~~vlvI~tTN~~------------------------- 544 (862)
.+... ..+.|+..|+.- . ...+.++|+|||..
T Consensus 681 ka~~~--------------v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (857)
T PRK10865 681 KAHPD--------------VFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVS 746 (857)
T ss_pred hCCHH--------------HHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHc
Confidence 87654 667777777642 1 12456789999873
Q ss_pred CCCCccccCCCCccccccCCCCCHHhHHHHHHHHHcc
Q 002961 545 DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK 581 (862)
Q Consensus 545 ~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~ 581 (862)
..+.|+|+. |+|.++.|.+++.++...|+..++..
T Consensus 747 ~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 747 HNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred ccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 125578887 99999999999999999998877744
No 50
>CHL00181 cbbX CbbX; Provisional
Probab=99.56 E-value=5e-14 Score=153.62 Aligned_cols=188 Identities=18% Similarity=0.274 Sum_probs=130.1
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc-------cCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhh
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA-------GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l-------~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~ 501 (862)
+.+++|+|||||||||+|++++..+ ..++++++...+...|+|+.......+++.+ .+++|||||++.+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~ 135 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLY 135 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHc---cCCEEEEEccchhc
Confidence 4458999999999999999998865 2357788888777778887766556666654 45799999999885
Q ss_pred hhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCC-----CCCccccCCCCccccccCCCCCHHhHHHHHH
Q 002961 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILK 576 (862)
Q Consensus 502 ~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~-----~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~ 576 (862)
... +........+..|+..|+... .+++||++++... .++|+|.+ ||+.+|.|++|+.+++..|+.
T Consensus 136 ~~~-----~~~~~~~e~~~~L~~~me~~~--~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~ 206 (287)
T CHL00181 136 KPD-----NERDYGSEAIEILLQVMENQR--DDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAK 206 (287)
T ss_pred cCC-----CccchHHHHHHHHHHHHhcCC--CCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHH
Confidence 421 122234557778888887543 4678888875422 34699999 999999999999999999999
Q ss_pred HHHccCC--CCCcccHHHHHh----h--cCCCC-HHHHHHHHHHHHHHHHHh----CCcccCHHHH
Q 002961 577 VHARKKP--MADDVDYLAVAS----M--TDGMV-GAELANIVEVAAINMMRD----GRTEITTDDL 629 (862)
Q Consensus 577 ~~l~~~~--~~~~~dl~~lA~----~--t~G~s-~adI~~lv~~A~~~A~~~----~~~~It~edl 629 (862)
.++.+.. +.+.. ...+.. . .+.+. ++++.++++.+...-..+ +...++.+|+
T Consensus 207 ~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~~~~~~~~~~l 271 (287)
T CHL00181 207 IMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFESGGRVLTKADL 271 (287)
T ss_pred HHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9987643 33222 222222 1 23344 799999998876443322 3334555554
No 51
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.55 E-value=7.3e-14 Score=150.50 Aligned_cols=176 Identities=20% Similarity=0.259 Sum_probs=123.0
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc-------cCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhh
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA-------GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l-------~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~ 501 (862)
+.+++|+|||||||||++++++..+ ...+++++++++...|+|+....+..+|..+ .++||||||+|.+.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a---~~~VL~IDE~~~L~ 118 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKA---LGGVLFIDEAYSLA 118 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhc---cCCEEEEechhhhc
Confidence 3568999999999999999999864 2356677777777778888777777777654 35799999999985
Q ss_pred hhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCC-----CCCCccccCCCCccccccCCCCCHHhHHHHHH
Q 002961 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP-----DILDPALVRPGRFDRKIFIPKPGLIGRMEILK 576 (862)
Q Consensus 502 ~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~-----~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~ 576 (862)
.. ......+..++.|+..|+... ..+++|++++.. ..++|++.+ ||+.+|.||+|+.+++.+|++
T Consensus 119 ~~------~~~~~~~~~i~~Ll~~~e~~~--~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~ 188 (261)
T TIGR02881 119 RG------GEKDFGKEAIDTLVKGMEDNR--NEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAE 188 (261)
T ss_pred cC------CccchHHHHHHHHHHHHhccC--CCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHH
Confidence 31 111233456788888887653 456666665432 237889998 999999999999999999999
Q ss_pred HHHccCCCC-CcccHHHHHhh---------cCCCCHHHHHHHHHHHHHHHH
Q 002961 577 VHARKKPMA-DDVDYLAVASM---------TDGMVGAELANIVEVAAINMM 617 (862)
Q Consensus 577 ~~l~~~~~~-~~~dl~~lA~~---------t~G~s~adI~~lv~~A~~~A~ 617 (862)
.++...... ++..+..++.. ...-+++.+.+++..|.....
T Consensus 189 ~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~ 239 (261)
T TIGR02881 189 RMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQA 239 (261)
T ss_pred HHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHH
Confidence 998765332 11122233221 112356788888887764443
No 52
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.53 E-value=1.1e-12 Score=162.68 Aligned_cols=325 Identities=21% Similarity=0.281 Sum_probs=191.9
Q ss_pred ccCchhhhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHH
Q 002961 223 TFRPKKESKRAAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKEEERRRKKE-----IRLQKYEESLQDARDNYR 297 (862)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~el~~~e~~~~~~k~e~q~~~~~~-----~r~~~~~~kl~~~~~~~k 297 (862)
|+.++..+.|+++|++.-.. .++.+..+.|++++.+++++...+.+.+.+.+.. .+.+.+.+++.+...+..
T Consensus 375 yi~~r~lPdkAidlld~a~a---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (852)
T TIGR03346 375 YITDRFLPDKAIDLIDEAAA---RIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYA 451 (852)
T ss_pred cccccCCchHHHHHHHHHHH---HHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 77888889999999986544 4566778889999999988888887777664432 255566666767777777
Q ss_pred HHHHHHHHHhccccccccccceeeeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhcc
Q 002961 298 YMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGE 377 (862)
Q Consensus 298 ~l~~~~k~~ae~s~~~~~~~~~~~l~~Y~GnYs~y~~~ke~~e~~~~~~k~~e~~~~~i~~le~~l~~~e~~~e~i~~~~ 377 (862)
.+...|............+ ...+.....+....++.....+..+.+...+..+++.+..++......
T Consensus 452 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 518 (852)
T TIGR03346 452 DLEEQWKAEKAAIQGIQQI---------KEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEE---- 518 (852)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhc----
Confidence 7777777766544331111 111111110001001111111111111112222333332222111100
Q ss_pred ccCChhhhhhcccccccchhhhcccCCCccccccCccc------c-----ccc------c---c--cccccc----cCCe
Q 002961 378 AEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDV------K-----FSD------M---Y--RRRGVR----IPGG 431 (862)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~V~~~~~i~~~~l~~~~~s~------~-----~~~------~---~--~~l~i~----~~~~ 431 (862)
.........++...+..+|.+|+|+|...+...+... . ++. . . ...++. +...
T Consensus 519 -~~~~l~~~~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~ 597 (852)
T TIGR03346 519 -TKPRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGS 597 (852)
T ss_pred -cccccccCCcCHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeE
Confidence 0011122344555677888999999987654322221 0 111 0 0 112222 2345
Q ss_pred EEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh-----hcccchh-----hHHHHHHHHHhcCCceeEhHHHH
Q 002961 432 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGAS-----RVRSLYQEAKDNAPSVVFIDELD 498 (862)
Q Consensus 432 vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~-----~~gq~~~-----~l~~~f~~a~~~~p~iL~iDEid 498 (862)
++|+||+|||||+++++|+..+ +.+++.++++.+... .+|...+ ....+...++..+.+++++|||+
T Consensus 598 ~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeie 677 (852)
T TIGR03346 598 FLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVE 677 (852)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccc
Confidence 8899999999999999999876 457788887765332 1221111 11335555666677899999999
Q ss_pred HhhhhccCcCCCCchhHHHHHHHHHHhhcccc---------CCCcEEEEEecCCCC------------------------
Q 002961 499 AVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPD------------------------ 545 (862)
Q Consensus 499 ~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~---------~~~~vlvI~tTN~~~------------------------ 545 (862)
.+.+. +.+.|+..|+.-. +..+.+||+|||...
T Consensus 678 ka~~~--------------v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (852)
T TIGR03346 678 KAHPD--------------VFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLR 743 (852)
T ss_pred cCCHH--------------HHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHH
Confidence 88654 6778888776421 124678999998722
Q ss_pred -CCCccccCCCCccccccCCCCCHHhHHHHHHHHHc
Q 002961 546 -ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR 580 (862)
Q Consensus 546 -~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~ 580 (862)
.+.|.|+. |+|.++.|.+++.+...+|+...+.
T Consensus 744 ~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 744 AHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred hhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 14567777 9999999999999999999987764
No 53
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1e-13 Score=160.71 Aligned_cols=202 Identities=25% Similarity=0.436 Sum_probs=164.1
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccC
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 506 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~ 506 (862)
.....++|+|+|||||||+++..|.+++.+++.++|.++.....+.....+...|..++...|+|+|+-++|.++.+..
T Consensus 429 ~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~d- 507 (953)
T KOG0736|consen 429 TLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQD- 507 (953)
T ss_pred ccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCC-
Confidence 3445699999999999999999999999999999999988776677777789999999999999999999999874432
Q ss_pred cCCCCchhHH--HHHHHHHHhhcccc-CCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCC
Q 002961 507 IKGSGGQERD--ATLNQLLVCLDGFE-GRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP 583 (862)
Q Consensus 507 ~~~Sgge~~r--~~l~~LL~~Ld~~~-~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~ 583 (862)
||+-.+ ..+..++. +|.+. ....++||++|+..+.+++.+++ -|-..|.++.|+.++|.+||+.++....
T Consensus 508 ----gged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~ 580 (953)
T KOG0736|consen 508 ----GGEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLP 580 (953)
T ss_pred ----CchhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccc
Confidence 233332 23333333 34343 45679999999999999999998 7778999999999999999999999999
Q ss_pred CCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHH---h-C----------------CcccCHHHHHHHHHHH
Q 002961 584 MADDVDYLAVASMTDGMVGAELANIVEVAAINMMR---D-G----------------RTEITTDDLLQAAQIE 636 (862)
Q Consensus 584 ~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~---~-~----------------~~~It~edl~~Al~~~ 636 (862)
+..++....+|..|.||+.+++..++..+-..+.. . + ...++.+|+..++...
T Consensus 581 ~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~ 653 (953)
T KOG0736|consen 581 LNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRL 653 (953)
T ss_pred cchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHH
Confidence 99999999999999999999999888765221111 1 1 1468999999999843
No 54
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=3.3e-13 Score=160.59 Aligned_cols=133 Identities=29% Similarity=0.400 Sum_probs=105.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhhcc---Cceeeeecccchhh------------hcccchhhHHHHHHHHHhcCCceeEh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAG---VNFFSISASQFVEI------------YVGVGASRVRSLYQEAKDNAPSVVFI 494 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~---~~~~~i~~~~~~~~------------~~gq~~~~l~~~f~~a~~~~p~iL~i 494 (862)
..++|.||+|+|||-|+++||..+. ..++.+++++++.. |+|.... ..+.+.++..+++|+++
T Consensus 522 gsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLl 599 (786)
T COG0542 522 GSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILL 599 (786)
T ss_pred eEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccc--cchhHhhhcCCCeEEEe
Confidence 4578999999999999999999885 78899999998764 5554443 56778888888999999
Q ss_pred HHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc---------CCCcEEEEEecCCCCC-------------------
Q 002961 495 DELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPDI------------------- 546 (862)
Q Consensus 495 DEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~---------~~~~vlvI~tTN~~~~------------------- 546 (862)
|||++..++ +++.||+.||.-. ...+.++|+|||--..
T Consensus 600 DEIEKAHpd--------------V~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~ 665 (786)
T COG0542 600 DEIEKAHPD--------------VFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKE 665 (786)
T ss_pred chhhhcCHH--------------HHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHH
Confidence 999999877 8999999998621 1246899999985311
Q ss_pred ---------CCccccCCCCccccccCCCCCHHhHHHHHHHHHc
Q 002961 547 ---------LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR 580 (862)
Q Consensus 547 ---------Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~ 580 (862)
+.|+++. |+|.+|.|.+.+.+...+|+...+.
T Consensus 666 ~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 666 AVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred HHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHH
Confidence 3466776 8888888888888888888877764
No 55
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.50 E-value=1.8e-13 Score=150.06 Aligned_cols=178 Identities=26% Similarity=0.406 Sum_probs=128.6
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcC----CceeEhHHHHHhhhh
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNA----PSVVFIDELDAVGRE 503 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~----p~iL~iDEid~l~~~ 503 (862)
....++||||||||||||+++||+..+..|..++... .+.+.++.+++.++... ..|||+|||+.|...
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh
Confidence 3456899999999999999999999999999888653 23456788888885433 369999999998654
Q ss_pred ccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEec--CCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHc-
Q 002961 504 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST--NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR- 580 (862)
Q Consensus 504 ~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tT--N~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~- 580 (862)
....||-.++ ++.+++|++| |+.-.+.++|++++| ++.+.+.+.++...++...+.
T Consensus 120 --------------QQD~lLp~vE----~G~iilIGATTENPsF~ln~ALlSR~~---vf~lk~L~~~di~~~l~ra~~~ 178 (436)
T COG2256 120 --------------QQDALLPHVE----NGTIILIGATTENPSFELNPALLSRAR---VFELKPLSSEDIKKLLKRALLD 178 (436)
T ss_pred --------------hhhhhhhhhc----CCeEEEEeccCCCCCeeecHHHhhhhh---eeeeecCCHHHHHHHHHHHHhh
Confidence 4556665555 5678899887 778889999999554 788999999999999988432
Q ss_pred -cCCCC------CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHH
Q 002961 581 -KKPMA------DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 636 (862)
Q Consensus 581 -~~~~~------~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~ 636 (862)
...+. ++.....++..+.|-..+.+ +++..+... .+.+. .++.+++.++++..
T Consensus 179 ~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL-N~LE~~~~~-~~~~~-~~~~~~l~~~l~~~ 238 (436)
T COG2256 179 EERGLGGQIIVLDEEALDYLVRLSNGDARRAL-NLLELAALS-AEPDE-VLILELLEEILQRR 238 (436)
T ss_pred hhcCCCcccccCCHHHHHHHHHhcCchHHHHH-HHHHHHHHh-cCCCc-ccCHHHHHHHHhhh
Confidence 22222 33446677888887555544 555555432 22233 45588888887743
No 56
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.48 E-value=2.2e-13 Score=148.42 Aligned_cols=177 Identities=19% Similarity=0.259 Sum_probs=125.1
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhcc-------CceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhh
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAG-------VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~-------~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~ 501 (862)
+.+++|+||||||||++|++++..+. .+++++++.++...|+|+....+..+|+.+ .+++|||||++.+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~ 134 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLY 134 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHc---cCcEEEEechhhhc
Confidence 44799999999999999999988652 268888887777778887766666677654 34799999999885
Q ss_pred hhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCC--CC---CCccccCCCCccccccCCCCCHHhHHHHHH
Q 002961 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP--DI---LDPALVRPGRFDRKIFIPKPGLIGRMEILK 576 (862)
Q Consensus 502 ~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~--~~---Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~ 576 (862)
... .........++.|+..|+.. ..+++||++++.. +. ++|+|.+ ||+..|.||+|+.+++..|+.
T Consensus 135 ~~~-----~~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~ 205 (284)
T TIGR02880 135 RPD-----NERDYGQEAIEILLQVMENQ--RDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAG 205 (284)
T ss_pred cCC-----CccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHH
Confidence 321 11223345677888888744 3567888877542 22 5899999 999999999999999999999
Q ss_pred HHHccCCCC-CcccHHHHHhh------cCC-CCHHHHHHHHHHHHHHHH
Q 002961 577 VHARKKPMA-DDVDYLAVASM------TDG-MVGAELANIVEVAAINMM 617 (862)
Q Consensus 577 ~~l~~~~~~-~~~dl~~lA~~------t~G-~s~adI~~lv~~A~~~A~ 617 (862)
.++.+.... .......+... .+. -+++.+.++++.+...-.
T Consensus 206 ~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~ 254 (284)
T TIGR02880 206 LMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQA 254 (284)
T ss_pred HHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHH
Confidence 999765322 11122233322 122 247889999988765443
No 57
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.47 E-value=4.8e-12 Score=156.16 Aligned_cols=335 Identities=17% Similarity=0.223 Sum_probs=194.9
Q ss_pred ccCchhhhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhH
Q 002961 223 TFRPKKESKRAAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKEEERRRKKE-------IRLQKYEESLQDARDN 295 (862)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~el~~~e~~~~~~k~e~q~~~~~~-------~r~~~~~~kl~~~~~~ 295 (862)
|+.++..+.|+++|+..-.. .+++++...+.+++.+++.+...+.+...+..+. .+..++.+++.....+
T Consensus 389 yi~~r~LPDKAIdlldea~a---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (852)
T TIGR03345 389 YIPGRQLPDKAVSLLDTACA---RVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAE 465 (852)
T ss_pred ccccccCccHHHHHHHHHHH---HHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHH
Confidence 77788889999999975433 4556677888888888888888887777764321 1444455555555555
Q ss_pred HHHHHHHHHHHhccccccccccceeeeeeehhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002961 296 YRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKI---EKAEREERKKLRQLERELEGLEGADDE 372 (862)
Q Consensus 296 ~k~l~~~~k~~ae~s~~~~~~~~~~~l~~Y~GnYs~y~~~ke~~e~~~~~---~k~~e~~~~~i~~le~~l~~~e~~~e~ 372 (862)
...+...|....+.... +..... +..... ..........+..+++++..++.
T Consensus 466 ~~~~~~~~~~~~~~~~~-------------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 520 (852)
T TIGR03345 466 LAALEARWQQEKELVEA-------------------ILALRA--ELEADADAPADDDAALRAQLAELEAALASAQG---- 520 (852)
T ss_pred HHHHHHHHHHHHHHHHH-------------------HHHHHH--HhhhcccchhhhhHHHHHHHHHHHHHHHHHhh----
Confidence 56666666654432111 000000 000000 00001111112222222221111
Q ss_pred HhhccccCChhhhhhcccccccchhhhcccCCCccccccCccc------cccc--------------cc--cccccc---
Q 002961 373 IEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDV------KFSD--------------MY--RRRGVR--- 427 (862)
Q Consensus 373 i~~~~~~~~~~l~~~~~~~~~~~~V~~~~~i~~~~l~~~~~s~------~~~~--------------~~--~~l~i~--- 427 (862)
........++...+..+|.+|+|+|+..+..++... .+.. .. ...|+.
T Consensus 521 -------~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~ 593 (852)
T TIGR03345 521 -------EEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPR 593 (852)
T ss_pred -------ccccccceecHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCC
Confidence 011112234445577889999999987664332221 1110 00 112232
Q ss_pred cCCe-EEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh------------hcccchhhHHHHHHHHHhcCCce
Q 002961 428 IPGG-ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI------------YVGVGASRVRSLYQEAKDNAPSV 491 (862)
Q Consensus 428 ~~~~-vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~------------~~gq~~~~l~~~f~~a~~~~p~i 491 (862)
.|.+ ++|+||+|+|||.|+++||..+ ...++.++++++... |+|.... ..+.+.++..+++|
T Consensus 594 ~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~sv 671 (852)
T TIGR03345 594 KPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSV 671 (852)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCccccccc--chHHHHHHhCCCcE
Confidence 3344 7999999999999999999987 456788887765432 3333222 23456667788899
Q ss_pred eEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc---------CCCcEEEEEecCCCC-----------------
Q 002961 492 VFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPD----------------- 545 (862)
Q Consensus 492 L~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~---------~~~~vlvI~tTN~~~----------------- 545 (862)
|+||||+.+.+. .++.|+..++.-. ...+.++|+|||...
T Consensus 672 vllDEieka~~~--------------v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~ 737 (852)
T TIGR03345 672 VLLDEVEKAHPD--------------VLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPE 737 (852)
T ss_pred EEEechhhcCHH--------------HHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchH
Confidence 999999987654 6777777776431 125688999988521
Q ss_pred ------------CCCccccCCCCccccccCCCCCHHhHHHHHHHHHccC--------CCC---CcccHHHHHhhcCC--C
Q 002961 546 ------------ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK--------PMA---DDVDYLAVASMTDG--M 600 (862)
Q Consensus 546 ------------~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~--------~~~---~~~dl~~lA~~t~G--~ 600 (862)
.+.|+|++ |++ +|.|.+.+.++...|+...+... .+. ++.....|+....+ +
T Consensus 738 ~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~ 814 (852)
T TIGR03345 738 ALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVES 814 (852)
T ss_pred HHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCC
Confidence 15577777 887 88999999999999998776431 111 22224445554432 3
Q ss_pred CHHHHHHHHHH
Q 002961 601 VGAELANIVEV 611 (862)
Q Consensus 601 s~adI~~lv~~ 611 (862)
-.+.+..+++.
T Consensus 815 GAR~L~r~Ie~ 825 (852)
T TIGR03345 815 GARNIDAILNQ 825 (852)
T ss_pred ChHHHHHHHHH
Confidence 45666666654
No 58
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.46 E-value=9.6e-13 Score=146.49 Aligned_cols=183 Identities=23% Similarity=0.276 Sum_probs=131.3
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccCc
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLI 507 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~ 507 (862)
++..++|+||+|+|||+|++++|..++..+..++...+. ....+..++..+ ..++++||||++.+...
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~------~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~---- 117 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE------KPGDLAAILTNL--EEGDVLFIDEIHRLSPV---- 117 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc------ChHHHHHHHHhc--ccCCEEEEecHhhcchH----
Confidence 456799999999999999999999998876665543211 112234444433 34679999999988532
Q ss_pred CCCCchhHHHHHHHHHHhhcccc----------------CCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhH
Q 002961 508 KGSGGQERDATLNQLLVCLDGFE----------------GRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGR 571 (862)
Q Consensus 508 ~~Sgge~~r~~l~~LL~~Ld~~~----------------~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R 571 (862)
....+...|+... .-..+++|++||.+..++++|++ ||+.++.|++|+.+++
T Consensus 118 ----------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~ 185 (328)
T PRK00080 118 ----------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEEL 185 (328)
T ss_pred ----------HHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHH
Confidence 1112222232211 01247889999999999999988 9998999999999999
Q ss_pred HHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 002961 572 MEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 635 (862)
Q Consensus 572 ~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 635 (862)
.+|++..+....+. ++..+..++..+.| +++.+..+++.+...+...+...|+.+++..++..
T Consensus 186 ~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 186 EKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVRDFAQVKGDGVITKEIADKALDM 249 (328)
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 99999887655433 33346778888877 45778888888777776666678999999998864
No 59
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.4e-12 Score=151.06 Aligned_cols=210 Identities=42% Similarity=0.690 Sum_probs=183.1
Q ss_pred cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhh
Q 002961 422 RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501 (862)
Q Consensus 422 ~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~ 501 (862)
..+++.++.+++++||+|+|||+++++++.. +..+..++.......+.+.....+..+|..+....|+++++|+++.+.
T Consensus 11 ~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~~~~~ 89 (494)
T COG0464 11 KKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEIDALA 89 (494)
T ss_pred HHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeechhhhcc
Confidence 3577889999999999999999999999998 555566666666777888888889999999999999999999999998
Q ss_pred hhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHcc
Q 002961 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK 581 (862)
Q Consensus 502 ~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~ 581 (862)
+.+.. ..+...+...+.++..++++. ...+++++.||.+..++++++++|||+..+.++.|+...+.+|+..+...
T Consensus 90 ~~~~~---~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~ 165 (494)
T COG0464 90 PKRSS---DQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRL 165 (494)
T ss_pred cCccc---cccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhc
Confidence 87654 455666778899999999888 44488889999999999999999999999999999999999999999988
Q ss_pred CCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhC------CcccCHHHHHHHHHHH
Q 002961 582 KPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG------RTEITTDDLLQAAQIE 636 (862)
Q Consensus 582 ~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~------~~~It~edl~~Al~~~ 636 (862)
.....+.+...++..+.|++++++..++..+...+.++. ...++.+++..++...
T Consensus 166 ~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~ 226 (494)
T COG0464 166 MFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKV 226 (494)
T ss_pred CCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhc
Confidence 877778999999999999999999999998887777774 3468899999998854
No 60
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.44 E-value=1.9e-12 Score=142.34 Aligned_cols=182 Identities=23% Similarity=0.288 Sum_probs=128.2
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccCcC
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIK 508 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~ 508 (862)
+..++|+||+|+|||+|+++++..++..+..+...... ....+...+..+ ..+.++||||++.+...
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~------~~~~l~~~l~~~--~~~~vl~iDEi~~l~~~----- 96 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALE------KPGDLAAILTNL--EEGDVLFIDEIHRLSPA----- 96 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhc------CchhHHHHHHhc--ccCCEEEEehHhhhCHH-----
Confidence 45689999999999999999999988776554432211 111223333332 34679999999988543
Q ss_pred CCCchhHHHHHHHHHHhhcccc----------------CCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHH
Q 002961 509 GSGGQERDATLNQLLVCLDGFE----------------GRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRM 572 (862)
Q Consensus 509 ~Sgge~~r~~l~~LL~~Ld~~~----------------~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~ 572 (862)
....|+..|+... ....+++|++||.+..+++++++ ||..++.|++|+.++..
T Consensus 97 ---------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~ 165 (305)
T TIGR00635 97 ---------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELA 165 (305)
T ss_pred ---------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHH
Confidence 2222333333211 11247889999999999999998 99888999999999999
Q ss_pred HHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 002961 573 EILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 635 (862)
Q Consensus 573 ~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 635 (862)
++++..+....+. ++..+..++..+.|.. +.+.++++.+...|...+...|+.+++..++..
T Consensus 166 ~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 166 EIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 9999887654332 3344667888888754 667788887766666666677999999988764
No 61
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.41 E-value=8.1e-13 Score=136.63 Aligned_cols=159 Identities=25% Similarity=0.340 Sum_probs=106.5
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccCcC
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIK 508 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~ 508 (862)
..+++|+||||+|||||++.||.+++.++..++...+. ....+..++..+. ...|||||||+.+...
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~------k~~dl~~il~~l~--~~~ILFIDEIHRlnk~----- 116 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE------KAGDLAAILTNLK--EGDILFIDEIHRLNKA----- 116 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--------SCHHHHHHHHT----TT-EEEECTCCC--HH-----
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh------hHHHHHHHHHhcC--CCcEEEEechhhccHH-----
Confidence 45799999999999999999999999998877654311 1223444444443 3469999999998654
Q ss_pred CCCchhHHHHHHHHHHhhcccc-----CC-----------CcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHH
Q 002961 509 GSGGQERDATLNQLLVCLDGFE-----GR-----------GNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRM 572 (862)
Q Consensus 509 ~Sgge~~r~~l~~LL~~Ld~~~-----~~-----------~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~ 572 (862)
....|+..|+++. +. ..+.+|+||+....+.+.|+. ||..+..+..++.++..
T Consensus 117 ---------~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~ 185 (233)
T PF05496_consen 117 ---------QQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELA 185 (233)
T ss_dssp ---------HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHH
T ss_pred ---------HHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHH
Confidence 5566777777532 11 348999999999999999999 99988899999999999
Q ss_pred HHHHHHHccCCCCCc-ccHHHHHhhcCCCCHHHHHHHHHHH
Q 002961 573 EILKVHARKKPMADD-VDYLAVASMTDGMVGAELANIVEVA 612 (862)
Q Consensus 573 ~Il~~~l~~~~~~~~-~dl~~lA~~t~G~s~adI~~lv~~A 612 (862)
.|++.......+.-+ .....+|.++.| +|+-..++++.+
T Consensus 186 ~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 186 KIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp HHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 999977765554433 335668888876 676565666654
No 62
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.41 E-value=2.8e-12 Score=144.63 Aligned_cols=212 Identities=19% Similarity=0.247 Sum_probs=143.2
Q ss_pred eeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhhhhHhhc-c-ccCChhh
Q 002961 321 FVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELE--------------GLEGADDEIEQG-E-AEQNPHL 384 (862)
Q Consensus 321 ~l~~Y~GnYs~y~~~ke~~e~~~~~~k~~e~~~~~i~~le~~l~--------------~~e~~~e~i~~~-~-~~~~~~l 384 (862)
.+.+|.|||++|...+. +...++.++++++++.+...+.-+. ..++..+++... . ......-
T Consensus 296 kl~~y~Gnydqy~~tr~--E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k 373 (614)
T KOG0927|consen 296 KLIYYEGNYDQYVKTRS--ELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEK 373 (614)
T ss_pred ceeeecCCHHHHhhHHH--HHhHHHHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCc
Confidence 45789999999999999 7777778888888888777666221 112222222111 0 0111111
Q ss_pred hhhcccccccchhhhcccCCCccccccCcccccccc---c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 385 KMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDM---Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 385 ~~~~~~~~~~~~V~~~~~i~~~~l~~~~~s~~~~~~---~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
.+.+-| ..+..+|.+++...++++.|.+. | .+||+....+|.++||||+|||||+|.+.+.+.+..|.
T Consensus 374 ~l~~~f-------~~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~ 446 (614)
T KOG0927|consen 374 VLSFRF-------PEVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGM 446 (614)
T ss_pred eEEEEc-------ccccCCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccc
Confidence 111111 22334677789999999999863 3 38999999999999999999999999999999999888
Q ss_pred eecccchhh-hcccchhhH----HHHHHHHHhcCCceeEhHHHHHhhhhccCcCC---------CCchhHHHHHHHHHHh
Q 002961 460 ISASQFVEI-YVGVGASRV----RSLYQEAKDNAPSVVFIDELDAVGRERGLIKG---------SGGQERDATLNQLLVC 525 (862)
Q Consensus 460 i~~~~~~~~-~~gq~~~~l----~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~---------Sgge~~r~~l~~LL~~ 525 (862)
++....... ++.|+.... ....+......|+.--++++..+++++++.++ |+|++.+..++.++
T Consensus 447 vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~-- 524 (614)
T KOG0927|consen 447 VSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLA-- 524 (614)
T ss_pred ccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHH--
Confidence 876543221 344443211 33444444444444567889999999888765 89999999999887
Q ss_pred hccccCCCcEEEEEecCCCCC
Q 002961 526 LDGFEGRGNVITIASTNRPDI 546 (862)
Q Consensus 526 Ld~~~~~~~vlvI~tTN~~~~ 546 (862)
+..+.-+++..+||+.|.
T Consensus 525 ---~kqP~lLlLDEPtnhLDi 542 (614)
T KOG0927|consen 525 ---VKQPHLLLLDEPTNHLDI 542 (614)
T ss_pred ---hcCCcEEEecCCCcCCCc
Confidence 444455666789998764
No 63
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.40 E-value=4.1e-12 Score=133.73 Aligned_cols=183 Identities=23% Similarity=0.263 Sum_probs=139.8
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccCc
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLI 507 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~ 507 (862)
...+++|+||||.|||||+..||.+++..+-..+...+. ....+..++.++. ..+|+|||||+.+...
T Consensus 51 ~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le------K~gDlaaiLt~Le--~~DVLFIDEIHrl~~~---- 118 (332)
T COG2255 51 ALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE------KPGDLAAILTNLE--EGDVLFIDEIHRLSPA---- 118 (332)
T ss_pred CcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc------ChhhHHHHHhcCC--cCCeEEEehhhhcChh----
Confidence 346899999999999999999999999876665544321 2233444555443 3479999999998653
Q ss_pred CCCCchhHHHHHHHHHHhhccccC----------------CCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhH
Q 002961 508 KGSGGQERDATLNQLLVCLDGFEG----------------RGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGR 571 (862)
Q Consensus 508 ~~Sgge~~r~~l~~LL~~Ld~~~~----------------~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R 571 (862)
+-..|.-.|++|.- -..+.+|++|.....|...|+. ||.....+..++.++.
T Consensus 119 ----------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL 186 (332)
T COG2255 119 ----------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEEL 186 (332)
T ss_pred ----------HHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHH
Confidence 33444455555421 1358999999999999999998 9999999999999999
Q ss_pred HHHHHHHHccCCCCC-cccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 002961 572 MEILKVHARKKPMAD-DVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 635 (862)
Q Consensus 572 ~~Il~~~l~~~~~~~-~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 635 (862)
..|+........+.- +.....+|.++.| +|+-...|+++..-.|...+...|+.+....|+..
T Consensus 187 ~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~ 250 (332)
T COG2255 187 EEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFAQVKGDGDIDRDIADKALKM 250 (332)
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 999998876554442 3345678888876 67767789999999999899999999988888874
No 64
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.39 E-value=1.8e-12 Score=158.44 Aligned_cols=198 Identities=24% Similarity=0.358 Sum_probs=141.9
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc----------cCceeeeecccch--hhhcccchhhHHHHHHHHHhcCCceeEh
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFV--EIYVGVGASRVRSLYQEAKDNAPSVVFI 494 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l----------~~~~~~i~~~~~~--~~~~gq~~~~l~~~f~~a~~~~p~iL~i 494 (862)
+...+++|+||||||||++++.||..+ +..++.++++.+. ..|.|+....++.+++.+....++||||
T Consensus 201 ~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfi 280 (731)
T TIGR02639 201 RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFI 280 (731)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEE
Confidence 345678999999999999999999976 5667777877766 3578888888999999988777899999
Q ss_pred HHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCC-----CCCccccCCCCccccccCCCCCHH
Q 002961 495 DELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLI 569 (862)
Q Consensus 495 DEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~-----~Ld~aLlrpgRfd~~I~~~~P~~~ 569 (862)
||+|.+.+... .++|... ..+.|...| .++.+.+|++||..+ ..|++|.| ||+ .|.++.|+.+
T Consensus 281 DEih~l~~~g~---~~~~~~~--~~~~L~~~l----~~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~ 348 (731)
T TIGR02639 281 DEIHTIVGAGA---TSGGSMD--ASNLLKPAL----SSGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIE 348 (731)
T ss_pred ecHHHHhccCC---CCCccHH--HHHHHHHHH----hCCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHH
Confidence 99999976432 1222211 223333333 256799999998633 47999999 997 7999999999
Q ss_pred hHHHHHHHHHccC----CC-CCcccHHHHHhhcCCC-----CHHHHHHHHHHHHHHHHHh----CCcccCHHHHHHHHHH
Q 002961 570 GRMEILKVHARKK----PM-ADDVDYLAVASMTDGM-----VGAELANIVEVAAINMMRD----GRTEITTDDLLQAAQI 635 (862)
Q Consensus 570 ~R~~Il~~~l~~~----~~-~~~~dl~~lA~~t~G~-----s~adI~~lv~~A~~~A~~~----~~~~It~edl~~Al~~ 635 (862)
++..|++...... .+ ..+..+..++..+..| .|.....++++|+...... ....|+.+|+..++..
T Consensus 349 ~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~ 428 (731)
T TIGR02639 349 ETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAK 428 (731)
T ss_pred HHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHH
Confidence 9999999666432 11 2344455666655544 3455567888876543322 1345999999999874
Q ss_pred H
Q 002961 636 E 636 (862)
Q Consensus 636 ~ 636 (862)
.
T Consensus 429 ~ 429 (731)
T TIGR02639 429 M 429 (731)
T ss_pred H
Confidence 3
No 65
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.37 E-value=5.2e-12 Score=144.66 Aligned_cols=210 Identities=19% Similarity=0.276 Sum_probs=140.4
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc-----cCceeeeecccchhhhcccch-hhHHHHHHHHHhcCCceeEhHHHHHhhhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGA-SRVRSLYQEAKDNAPSVVFIDELDAVGRE 503 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l-----~~~~~~i~~~~~~~~~~gq~~-~~l~~~f~~a~~~~p~iL~iDEid~l~~~ 503 (862)
..++|+||+|+|||+|+++|+.++ +..++++++.++...+..... ..+..+.+... .+++|+|||++.+.+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGK 214 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCC
Confidence 458999999999999999999876 456778887765543322111 11222333332 3579999999987543
Q ss_pred ccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCC---CCccccCCCCcc--ccccCCCCCHHhHHHHHHHH
Q 002961 504 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVH 578 (862)
Q Consensus 504 ~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~---Ld~aLlrpgRfd--~~I~~~~P~~~~R~~Il~~~ 578 (862)
. . ....|+..++.....+..+||+++..|.. +++.+.+ ||. ..+.+++|+.++|..|++..
T Consensus 215 ~---------~---~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 215 E---------R---TQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred H---------H---HHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHH
Confidence 1 1 22334444444433445566666655554 5678888 775 47999999999999999999
Q ss_pred HccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHhccccccccccccchhHHHHH
Q 002961 579 ARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQVAIN 657 (862)
Q Consensus 579 l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~~~~~~~~~~~~~~r~vA~h 657 (862)
+....+. ++..+..+|....| +.+++..+++.....+...+ ..||.+.+.+++..... ...+.+..+
T Consensus 281 ~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~~~~----------~~~~~it~~ 348 (405)
T TIGR00362 281 AEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLTG-KPITLELAKEALKDLLR----------AKKKEITIE 348 (405)
T ss_pred HHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhcc----------ccCCCCCHH
Confidence 8765443 34446667877654 67889999988876666555 46999999998864311 112346677
Q ss_pred HHHHHHHHHh
Q 002961 658 EAAMAVVAVN 667 (862)
Q Consensus 658 EaGHAlva~l 667 (862)
++.++|..++
T Consensus 349 ~I~~~Va~~~ 358 (405)
T TIGR00362 349 NIQEVVAKYY 358 (405)
T ss_pred HHHHHHHHHc
Confidence 7888887765
No 66
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.37 E-value=2.7e-12 Score=155.78 Aligned_cols=197 Identities=24% Similarity=0.356 Sum_probs=135.5
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc----------cCceeeeecccch--hhhcccchhhHHHHHHHHHhcCCceeEh
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFV--EIYVGVGASRVRSLYQEAKDNAPSVVFI 494 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l----------~~~~~~i~~~~~~--~~~~gq~~~~l~~~f~~a~~~~p~iL~i 494 (862)
+.+.+++|+||||||||++++.++..+ +..++.++.+.+. ..|.|.....+..++..+....++||||
T Consensus 205 ~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfI 284 (758)
T PRK11034 205 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFI 284 (758)
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEe
Confidence 345678999999999999999999764 3344444444443 2366777777888999888888899999
Q ss_pred HHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCC-----CCCccccCCCCccccccCCCCCHH
Q 002961 495 DELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLI 569 (862)
Q Consensus 495 DEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~-----~Ld~aLlrpgRfd~~I~~~~P~~~ 569 (862)
||++.+.+... .+++... ..+.|. .+..++.+.+|++||..+ ..|++|.| ||+ .|.++.|+.+
T Consensus 285 DEIh~L~g~g~---~~~g~~d--~~nlLk----p~L~~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~ 352 (758)
T PRK11034 285 DEIHTIIGAGA---ASGGQVD--AANLIK----PLLSSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIE 352 (758)
T ss_pred ccHHHHhccCC---CCCcHHH--HHHHHH----HHHhCCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHH
Confidence 99999976531 1222211 222222 222467899999998764 47999999 997 8999999999
Q ss_pred hHHHHHHHHHccCCCCCccc-----HHHHHh-----hcCCCCHHHHHHHHHHHHHHHHH----hCCcccCHHHHHHHHHH
Q 002961 570 GRMEILKVHARKKPMADDVD-----YLAVAS-----MTDGMVGAELANIVEVAAINMMR----DGRTEITTDDLLQAAQI 635 (862)
Q Consensus 570 ~R~~Il~~~l~~~~~~~~~d-----l~~lA~-----~t~G~s~adI~~lv~~A~~~A~~----~~~~~It~edl~~Al~~ 635 (862)
++..||+.+........++. +...+. ..+.+.|.....++++|+..... .....|+.+|+.+++..
T Consensus 353 ~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~ 432 (758)
T PRK11034 353 ETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVAR 432 (758)
T ss_pred HHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHH
Confidence 99999997765443332222 222222 23345677888999998754322 22346899999888764
No 67
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.33 E-value=6.9e-12 Score=145.52 Aligned_cols=188 Identities=20% Similarity=0.290 Sum_probs=128.8
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc-----cCceeeeecccchhhhcccchh-hHHHHHHHHHhcCCceeEhHHHHHhhhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGAS-RVRSLYQEAKDNAPSVVFIDELDAVGRE 503 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l-----~~~~~~i~~~~~~~~~~gq~~~-~l~~~f~~a~~~~p~iL~iDEid~l~~~ 503 (862)
..++|+||+|+|||+|+++++..+ +..+.++++..+...+...... ....+.+..+ .+++|+|||++.+.+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCC
Confidence 458999999999999999999986 4457777777665443322111 1122333322 4679999999988543
Q ss_pred ccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCC---CCccccCCCCcc--ccccCCCCCHHhHHHHHHHH
Q 002961 504 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVH 578 (862)
Q Consensus 504 ~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~---Ld~aLlrpgRfd--~~I~~~~P~~~~R~~Il~~~ 578 (862)
. . ....|+..++.+...+..+||+++..|.. +++.+.+ ||. .++.+++|+.++|..|++..
T Consensus 227 ~---------~---~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 227 E---------R---TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred H---------H---HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHH
Confidence 1 1 22344444444444445567766666655 6688888 775 57999999999999999999
Q ss_pred HccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 002961 579 ARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 635 (862)
Q Consensus 579 l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 635 (862)
+....+. ++..+..+|....| +.+.|..+++.....+...++ .||.+.+.+++..
T Consensus 293 ~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~~~-~it~~~~~~~l~~ 348 (450)
T PRK00149 293 AEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLTGK-PITLELAKEALKD 348 (450)
T ss_pred HHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhhCC-CCCHHHHHHHHHH
Confidence 8764432 33446777777765 777888888887766665554 5999988888753
No 68
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.33 E-value=2.5e-11 Score=130.75 Aligned_cols=177 Identities=27% Similarity=0.446 Sum_probs=123.0
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCc---eeeeecccchhhhcccchhhHHHHHHHHHhc-----CCceeEhHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVN---FFSISASQFVEIYVGVGASRVRSLYQEAKDN-----APSVVFIDELDAVG 501 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~---~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~-----~p~iL~iDEid~l~ 501 (862)
..++|+||||||||||++.|+.....+ |++++... .....++.+|+.++.. ...|+|||||+.|.
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 468999999999999999999987665 44444332 2334567888877542 35699999999986
Q ss_pred hhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEec--CCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHH
Q 002961 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST--NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 502 ~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tT--N~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l 579 (862)
.. ....||-.+ .++.|++|++| |+.-.+..+|+++|| ++.+.....+.-..||.+-+
T Consensus 236 ks--------------QQD~fLP~V----E~G~I~lIGATTENPSFqln~aLlSRC~---VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 236 KS--------------QQDTFLPHV----ENGDITLIGATTENPSFQLNAALLSRCR---VFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hh--------------hhhccccee----ccCceEEEecccCCCccchhHHHHhccc---eeEeccCCHHHHHHHHHHHH
Confidence 43 334444333 35678999887 777789999999775 67788888888888888744
Q ss_pred cc-----C---CCC------CcccHHHHHhhcCCCCHHHHHHHHHHH-HHHHHHhC---CcccCHHHHHHHHHH
Q 002961 580 RK-----K---PMA------DDVDYLAVASMTDGMVGAELANIVEVA-AINMMRDG---RTEITTDDLLQAAQI 635 (862)
Q Consensus 580 ~~-----~---~~~------~~~dl~~lA~~t~G~s~adI~~lv~~A-~~~A~~~~---~~~It~edl~~Al~~ 635 (862)
.- . ++. ++--++.++..++|-..+.+. .++.+ ...+.+.| +..++.+|+.+.++.
T Consensus 295 a~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN-~Lems~~m~~tr~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 295 ASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALN-ALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred HhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHH-HHHHHHHHHHhhcCCcccceecHHHHHHHHhh
Confidence 31 1 111 223467788899998887774 44444 23334444 457999999999874
No 69
>PRK06893 DNA replication initiation factor; Validated
Probab=99.32 E-value=1.4e-11 Score=130.37 Aligned_cols=180 Identities=16% Similarity=0.153 Sum_probs=116.5
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccC
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 506 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~ 506 (862)
..++|+||+|||||+|+.++++++ +....+++...... ....+++.+. ..++++|||++.+.+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~~~--~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--------FSPAVLENLE--QQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh--------hhHHHHhhcc--cCCEEEEeChhhhcCCh--
Confidence 357999999999999999999875 34445555432110 0112333332 35799999999875431
Q ss_pred cCCCCchhHHHHHHHHHHhhccccCCCc-EEEEEecCCCCCCC---ccccCCCCccccccCCCCCHHhHHHHHHHHHccC
Q 002961 507 IKGSGGQERDATLNQLLVCLDGFEGRGN-VITIASTNRPDILD---PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK 582 (862)
Q Consensus 507 ~~~Sgge~~r~~l~~LL~~Ld~~~~~~~-vlvI~tTN~~~~Ld---~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~ 582 (862)
... ..++..++.....++ +++++++..|..++ +.|.++.+++..+.+++|+.+++.+|++..+...
T Consensus 108 -------~~~---~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~ 177 (229)
T PRK06893 108 -------EWE---LAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR 177 (229)
T ss_pred -------HHH---HHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc
Confidence 111 223444444433344 44556666666654 7898866677889999999999999999887654
Q ss_pred CCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 002961 583 PMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 633 (862)
Q Consensus 583 ~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al 633 (862)
.+. ++..+..|+....| +.+.+.++++.....+...++ .||...+.+++
T Consensus 178 ~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~~-~it~~~v~~~L 227 (229)
T PRK06893 178 GIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQAQR-KLTIPFVKEIL 227 (229)
T ss_pred CCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHh
Confidence 443 33445667777765 566677777765433333344 79999998876
No 70
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.31 E-value=3e-11 Score=136.07 Aligned_cols=195 Identities=24% Similarity=0.300 Sum_probs=127.5
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhcc---------Cceeeeecccchhh----------hc--cc-------c-hhhHH
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAG---------VNFFSISASQFVEI----------YV--GV-------G-ASRVR 478 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~---------~~~~~i~~~~~~~~----------~~--gq-------~-~~~l~ 478 (862)
.+..++|+||+|+|||++++.++..+. ..++++++...... .. +. . ...+.
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 118 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFR 118 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHH
Confidence 446799999999999999999987652 45677776543221 10 11 0 11123
Q ss_pred HHHHHHHh-cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcc-ccCCCcEEEEEecCCCC---CCCccccC
Q 002961 479 SLYQEAKD-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG-FEGRGNVITIASTNRPD---ILDPALVR 553 (862)
Q Consensus 479 ~~f~~a~~-~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~-~~~~~~vlvI~tTN~~~---~Ld~aLlr 553 (862)
.++..+.. ..+.+++|||+|.+.... ...+..|+...+. ...+.++.+|+++|.++ .+++.+.+
T Consensus 119 ~l~~~l~~~~~~~vlvIDE~d~L~~~~-----------~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s 187 (365)
T TIGR02928 119 RLYKELNERGDSLIIVLDEIDYLVGDD-----------DDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS 187 (365)
T ss_pred HHHHHHHhcCCeEEEEECchhhhccCC-----------cHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc
Confidence 34444432 346689999999996321 0144555443211 12235788899998876 47777777
Q ss_pred CCCcc-ccccCCCCCHHhHHHHHHHHHccC----CCCCcc-c-HHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCH
Q 002961 554 PGRFD-RKIFIPKPGLIGRMEILKVHARKK----PMADDV-D-YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 626 (862)
Q Consensus 554 pgRfd-~~I~~~~P~~~~R~~Il~~~l~~~----~~~~~~-d-l~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~ 626 (862)
||. ..+.|++|+.++..+|++.++... .+.+++ + +..++..+.|.. +.+.++|+.|...|..++...||.
T Consensus 188 --~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~-R~al~~l~~a~~~a~~~~~~~it~ 264 (365)
T TIGR02928 188 --SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDA-RKAIDLLRVAGEIAEREGAERVTE 264 (365)
T ss_pred --cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHcCCCCCCH
Confidence 664 679999999999999999888521 122221 1 223444555644 445688888988888888889999
Q ss_pred HHHHHHHHHH
Q 002961 627 DDLLQAAQIE 636 (862)
Q Consensus 627 edl~~Al~~~ 636 (862)
+|+..|+...
T Consensus 265 ~~v~~a~~~~ 274 (365)
T TIGR02928 265 DHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHHH
Confidence 9999998743
No 71
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=3.4e-11 Score=137.93 Aligned_cols=183 Identities=19% Similarity=0.253 Sum_probs=125.1
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCcee--eeecc------cchh-----h-----hcccchhhHHHHHHHHHh---
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFF--SISAS------QFVE-----I-----YVGVGASRVRSLYQEAKD--- 486 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~--~i~~~------~~~~-----~-----~~gq~~~~l~~~f~~a~~--- 486 (862)
.+..++|+||+|+||||+++++|..++.... ...|+ .+.. . ....+...++.+.+.+..
T Consensus 39 i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~ 118 (484)
T PRK14956 39 IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPM 118 (484)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhh
Confidence 3456899999999999999999998764211 00010 0000 0 011123344555554432
Q ss_pred -cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCC
Q 002961 487 -NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPK 565 (862)
Q Consensus 487 -~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~ 565 (862)
....|++|||+|.+... .++.||..|+. +..++++|.+|+.+..|++++++ |+. ++.|.+
T Consensus 119 ~g~~KV~IIDEah~Ls~~--------------A~NALLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ 179 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQ--------------SFNALLKTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKK 179 (484)
T ss_pred cCCCEEEEEechhhcCHH--------------HHHHHHHHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecC
Confidence 23459999999998654 78889988875 34578889999999999999999 654 788989
Q ss_pred CCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 566 PGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 566 P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
++.++....++..+....+. ++..+..++....| +.++..+++..+... +...||.+++.+.+.
T Consensus 180 ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~RdAL~lLeq~i~~----~~~~it~~~V~~~lg 244 (484)
T PRK14956 180 VPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVRDMLSFMEQAIVF----TDSKLTGVKIRKMIG 244 (484)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHHHHHHHHHHHHHh----CCCCcCHHHHHHHhC
Confidence 99888888888877654432 44557778888877 566666777765432 233599999887763
No 72
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.29 E-value=2.3e-11 Score=140.36 Aligned_cols=191 Identities=16% Similarity=0.202 Sum_probs=126.3
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc-----cCceeeeecccchhhhcccch-hhHHHHHHHHHhcCCceeEhHHHHHhhhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGA-SRVRSLYQEAKDNAPSVVFIDELDAVGRE 503 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l-----~~~~~~i~~~~~~~~~~gq~~-~~l~~~f~~a~~~~p~iL~iDEid~l~~~ 503 (862)
..++|+||+|+|||+|+++++..+ +..+.++++.++...+..... ..+..+.... ...+++|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~-~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKY-RKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHH-HhcCCEEEEechhhhcCc
Confidence 358999999999999999999975 345677777765544322111 1122222222 235789999999987543
Q ss_pred ccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCC---CCccccCCCCccccccCCCCCHHhHHHHHHHHHc
Q 002961 504 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR 580 (862)
Q Consensus 504 ~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~---Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~ 580 (862)
.. ....++..++.+...+..+||++++.|.. +.+.+.++.....++.+++|+.+.|..|++..+.
T Consensus 210 ~~------------~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 210 TG------------VQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred HH------------HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 11 22334444444444445566666666655 4567887333346788999999999999998886
Q ss_pred cCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 002961 581 KKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 635 (862)
Q Consensus 581 ~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 635 (862)
...+. ++..+..||....| +.++|..+++.....+...++ .||.+.+.+++..
T Consensus 278 ~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~~~-~it~~~a~~~L~~ 331 (440)
T PRK14088 278 IEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTGE-EVDLKEAILLLKD 331 (440)
T ss_pred hcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 54332 33346677777765 677888888877666665554 6999999988864
No 73
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.29 E-value=2.2e-10 Score=141.85 Aligned_cols=133 Identities=27% Similarity=0.393 Sum_probs=98.3
Q ss_pred eEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh------------hcccchhhHHHHHHHHHhcCCceeEhH
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI------------YVGVGASRVRSLYQEAKDNAPSVVFID 495 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~------------~~gq~~~~l~~~f~~a~~~~p~iL~iD 495 (862)
.++|+||+|+|||+|+++||..+ +.+++.++++++... |+|... ...+.+.++..+.+|+++|
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllD 618 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFD 618 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEEC
Confidence 47899999999999999999976 356778877765332 222211 1345666677777899999
Q ss_pred HHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc---------CCCcEEEEEecCCCCC--------------------
Q 002961 496 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPDI-------------------- 546 (862)
Q Consensus 496 Eid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~---------~~~~vlvI~tTN~~~~-------------------- 546 (862)
|+|.+.+. +.+.|+..|+.-. ...+.++|+|||....
T Consensus 619 eieka~~~--------------v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~ 684 (821)
T CHL00095 619 EIEKAHPD--------------IFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSE 684 (821)
T ss_pred ChhhCCHH--------------HHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCccccccccc
Confidence 99998655 7788888887521 1357899999985321
Q ss_pred -----------------CCccccCCCCccccccCCCCCHHhHHHHHHHHHcc
Q 002961 547 -----------------LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK 581 (862)
Q Consensus 547 -----------------Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~ 581 (862)
+.|+|++ |+|.+|.|.+.+.++...|+...+..
T Consensus 685 ~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 685 KQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred ccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 2356676 99999999999999999999877753
No 74
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.29 E-value=2.6e-11 Score=143.02 Aligned_cols=188 Identities=28% Similarity=0.362 Sum_probs=127.9
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc----------cCceeeeecccc-------hhhhcccchhhH-------------
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQF-------VEIYVGVGASRV------------- 477 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l----------~~~~~~i~~~~~-------~~~~~gq~~~~l------------- 477 (862)
.+..++|+||+|||||++|++|...+ +.+++.+++... ....++.....+
T Consensus 85 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~ 164 (531)
T TIGR02902 85 NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIP 164 (531)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcc
Confidence 35679999999999999999997532 246777876531 101111000000
Q ss_pred HHHHHHHHhcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc--------------------------C
Q 002961 478 RSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--------------------------G 531 (862)
Q Consensus 478 ~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~--------------------------~ 531 (862)
..-...+.....++|||||++.+... .++.|+..|+... -
T Consensus 165 ~~~~G~l~~a~gG~L~IdEI~~L~~~--------------~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (531)
T TIGR02902 165 QPKPGAVTRAHGGVLFIDEIGELHPV--------------QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGL 230 (531)
T ss_pred cccCchhhccCCcEEEEechhhCCHH--------------HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCc
Confidence 00000122334579999999998654 5566666554310 0
Q ss_pred CCcE-EEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHH
Q 002961 532 RGNV-ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIV 609 (862)
Q Consensus 532 ~~~v-lvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv 609 (862)
...+ ++++|||.++.++|++++ |+. .|.|++++.+++..|++..+++..+. ++..+..++..+ .+++++.+++
T Consensus 231 ~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll 305 (531)
T TIGR02902 231 PADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIV 305 (531)
T ss_pred ccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHH
Confidence 1123 445666889999999999 775 78899999999999999998765433 233345555544 3789999999
Q ss_pred HHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 610 EVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 610 ~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
+.|+..|..+++..|+.+|+..++.
T Consensus 306 ~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 306 QLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 9999888888888999999999986
No 75
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.27 E-value=8.8e-11 Score=133.75 Aligned_cols=196 Identities=22% Similarity=0.303 Sum_probs=129.4
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc-----cCceeeeecccchhh----------hccc-------chh-hHHHHHHHH
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEI----------YVGV-------GAS-RVRSLYQEA 484 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l-----~~~~~~i~~~~~~~~----------~~gq-------~~~-~l~~~f~~a 484 (862)
.+..++|+||+|+|||++++.++..+ +..++++++...... ..+. ... .+..+.+.+
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 133 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYL 133 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999876 456777877543221 1110 111 123333333
Q ss_pred Hh-cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCC---CCCccccCCCCcc-c
Q 002961 485 KD-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRFD-R 559 (862)
Q Consensus 485 ~~-~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~---~Ld~aLlrpgRfd-~ 559 (862)
.. ..+.+++|||+|.+....+ ...+..|+..++.... .++.+|+++|..+ .+++.+.+ ||. .
T Consensus 134 ~~~~~~~viviDE~d~l~~~~~----------~~~l~~l~~~~~~~~~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~ 200 (394)
T PRK00411 134 DERDRVLIVALDDINYLFEKEG----------NDVLYSLLRAHEEYPG-ARIGVIGISSDLTFLYILDPRVKS--VFRPE 200 (394)
T ss_pred HhcCCEEEEEECCHhHhhccCC----------chHHHHHHHhhhccCC-CeEEEEEEECCcchhhhcCHHHHh--cCCcc
Confidence 32 3457899999999872211 1256666665554432 3788888887754 46676666 553 5
Q ss_pred cccCCCCCHHhHHHHHHHHHccC---CCCCcccHHHHHhhcCC--CCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 560 KIFIPKPGLIGRMEILKVHARKK---PMADDVDYLAVASMTDG--MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 560 ~I~~~~P~~~~R~~Il~~~l~~~---~~~~~~dl~~lA~~t~G--~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
.|.|++++.++..+|++.++... ...++..+..++..+.+ ...+.+..++..|...|..++...|+.+|+..|+.
T Consensus 201 ~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~ 280 (394)
T PRK00411 201 EIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYE 280 (394)
T ss_pred eeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 78999999999999999887532 11233335556665532 13455668888888888888888999999999987
Q ss_pred HH
Q 002961 635 IE 636 (862)
Q Consensus 635 ~~ 636 (862)
..
T Consensus 281 ~~ 282 (394)
T PRK00411 281 KS 282 (394)
T ss_pred HH
Confidence 43
No 76
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.27 E-value=7.6e-11 Score=135.37 Aligned_cols=173 Identities=29% Similarity=0.420 Sum_probs=121.8
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHH----hcCCceeEhHHHHHhhhhc
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAK----DNAPSVVFIDELDAVGRER 504 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~----~~~p~iL~iDEid~l~~~~ 504 (862)
+..++|+||||||||||+++|+...+..+..+++... +...++.+++.+. .....+++|||++.+...
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~- 107 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA- 107 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-
Confidence 3478999999999999999999999998888876531 1223445555443 224579999999988543
Q ss_pred cCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEec--CCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccC
Q 002961 505 GLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST--NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK 582 (862)
Q Consensus 505 ~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tT--N~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~ 582 (862)
..+.|+..++. +.+++|++| |....+++++++ |+ .++.|++++.++...+++..+...
T Consensus 108 -------------~q~~LL~~le~----~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~ 167 (413)
T PRK13342 108 -------------QQDALLPHVED----GTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDK 167 (413)
T ss_pred -------------HHHHHHHHhhc----CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHh
Confidence 44556665553 456677665 445678999999 66 588999999999999999877542
Q ss_pred --CC--CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 002961 583 --PM--ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 635 (862)
Q Consensus 583 --~~--~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 635 (862)
.+ ..+..+..++..+.| ..+.+.++++.+... ...|+.+++..++..
T Consensus 168 ~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~~-----~~~It~~~v~~~~~~ 218 (413)
T PRK13342 168 ERGLVELDDEALDALARLANG-DARRALNLLELAALG-----VDSITLELLEEALQK 218 (413)
T ss_pred hcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHc-----cCCCCHHHHHHHHhh
Confidence 11 223345667777755 555566776665432 457999999998874
No 77
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.25 E-value=5.3e-11 Score=139.73 Aligned_cols=188 Identities=16% Similarity=0.202 Sum_probs=125.4
Q ss_pred eEEEECCCCCchhHHHHHHHhhc-----cCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhcc
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 505 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l-----~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~ 505 (862)
.++|+|++|+|||+|+++|++.+ +..+.++++.++...+...........|..- ...+++|+||||+.+.+..
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke- 393 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE- 393 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH-
Confidence 48999999999999999999976 4567788887766554332211111122221 2246899999999875431
Q ss_pred CcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCC---CCCCccccCCCCc--cccccCCCCCHHhHHHHHHHHHc
Q 002961 506 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP---DILDPALVRPGRF--DRKIFIPKPGLIGRMEILKVHAR 580 (862)
Q Consensus 506 ~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~---~~Ld~aLlrpgRf--d~~I~~~~P~~~~R~~Il~~~l~ 580 (862)
. ....|+..++.+...++.+||++...+ ..+++.|.+ || ..++.+..|+.+.|.+||+..+.
T Consensus 394 --------~---tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 394 --------S---TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred --------H---HHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 1 123344444444444444555444444 357788988 66 56779999999999999999987
Q ss_pred cCCCCCc-ccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 002961 581 KKPMADD-VDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 635 (862)
Q Consensus 581 ~~~~~~~-~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 635 (862)
...+.-+ ..+..|+....+ +.+.|..+++.....+...+ ..||.+.+..++..
T Consensus 461 ~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~ 514 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLNR-QPVDLGLTEIVLRD 514 (617)
T ss_pred hcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHH
Confidence 7655433 335556776653 67888888887766665555 46999999888763
No 78
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=9.1e-11 Score=136.07 Aligned_cols=177 Identities=20% Similarity=0.248 Sum_probs=120.0
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCc------------------------eeeeecccchhhhcccchhhHHHHHHH
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVN------------------------FFSISASQFVEIYVGVGASRVRSLYQE 483 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~------------------------~~~i~~~~~~~~~~gq~~~~l~~~f~~ 483 (862)
.+..++|+|||||||||+|+++|..++.. ++.++.+ ...+...++.+.+.
T Consensus 35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa------~~~gid~iR~i~~~ 108 (472)
T PRK14962 35 ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAA------SNRGIDEIRKIRDA 108 (472)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCc------ccCCHHHHHHHHHH
Confidence 45668999999999999999999987541 2222211 01122334555554
Q ss_pred HHhc----CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccc
Q 002961 484 AKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDR 559 (862)
Q Consensus 484 a~~~----~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~ 559 (862)
+... ...++++||+|.+... .++.|+..|+... +.+++|++|+.+..+++++++ |+.
T Consensus 109 ~~~~p~~~~~kVvIIDE~h~Lt~~--------------a~~~LLk~LE~p~--~~vv~Ilattn~~kl~~~L~S--R~~- 169 (472)
T PRK14962 109 VGYRPMEGKYKVYIIDEVHMLTKE--------------AFNALLKTLEEPP--SHVVFVLATTNLEKVPPTIIS--RCQ- 169 (472)
T ss_pred HhhChhcCCeEEEEEEChHHhHHH--------------HHHHHHHHHHhCC--CcEEEEEEeCChHhhhHHHhc--CcE-
Confidence 4322 2458999999998543 5677888887543 467777777778899999999 664
Q ss_pred cccCCCCCHHhHHHHHHHHHccCCC-CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 560 KIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 560 ~I~~~~P~~~~R~~Il~~~l~~~~~-~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
.+.|.+++.++...+++..+....+ .++..+..++..+.| +.+.+.+++..+.. ..+ ..||.+++..++.
T Consensus 170 vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-dlR~aln~Le~l~~---~~~-~~It~e~V~~~l~ 240 (472)
T PRK14962 170 VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-GLRDALTMLEQVWK---FSE-GKITLETVHEALG 240 (472)
T ss_pred EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHHH---hcC-CCCCHHHHHHHHc
Confidence 8999999999999999887754432 234456778887765 44445555554432 222 2499999998874
No 79
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=6.8e-11 Score=129.67 Aligned_cols=211 Identities=20% Similarity=0.261 Sum_probs=126.6
Q ss_pred eeeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhh-hhH----hh--------ccccCCh-
Q 002961 320 FFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERE---LEGLEGAD-DEI----EQ--------GEAEQNP- 382 (862)
Q Consensus 320 ~~l~~Y~GnYs~y~~~ke~~e~~~~~~k~~e~~~~~i~~le~~---l~~~e~~~-e~i----~~--------~~~~~~~- 382 (862)
..+++|+|||+.|...++ +....+.+.+++++++++++... .+++++.. +.+ .. ......+
T Consensus 485 qkLhyYrGNY~~FKKmY~--Qk~~e~~K~yekQeK~LkelKa~GkS~KqAEkq~Ke~ltrKq~K~~~Knq~dded~gapE 562 (807)
T KOG0066|consen 485 QKLHYYRGNYTLFKKMYA--QKMQEHEKNYEKQEKQLKELKAEGKSAKQAEKQVKEQLTRKQKKGGKKNQNDDEDAGAPE 562 (807)
T ss_pred hhhhhhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhccccccCccccccCHH
Confidence 345679999999999999 77788888888888887776651 11111111 000 00 0000000
Q ss_pred ------hhhhhcccccccchhhhcccCCCccccccCccccccc---cc--cccccccCCeEEEECCCCCchhHHHHHHHh
Q 002961 383 ------HLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSD---MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAG 451 (862)
Q Consensus 383 ------~l~~~~~~~~~~~~V~~~~~i~~~~l~~~~~s~~~~~---~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~ 451 (862)
.....|.|..+. .+..+++-+.++++.|.. +| .+||+....+|+|+||||+|||||++.|.|
T Consensus 563 LL~RpKEY~VkF~FPep~-------~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~G 635 (807)
T KOG0066|consen 563 LLQRPKEYSVKFQFPEPT-------KLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIG 635 (807)
T ss_pred HHhCchheEEEEecCCCC-------CCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhc
Confidence 111122222222 344555777888888854 33 389999999999999999999999999999
Q ss_pred hccCceeeeecccch-hhhcccchhh-H---HHHHHHHHhcCCceeEhHHHHHhhhhccCcCC---------CCchhHHH
Q 002961 452 EAGVNFFSISASQFV-EIYVGVGASR-V---RSLYQEAKDNAPSVVFIDELDAVGRERGLIKG---------SGGQERDA 517 (862)
Q Consensus 452 ~l~~~~~~i~~~~~~-~~~~gq~~~~-l---~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~---------Sgge~~r~ 517 (862)
.+.+.-|+..-.... ..+++|+... + ....+.+...- -+--.+.+..++.++..+. |||+..|.
T Consensus 636 kl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~F--Nlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRV 713 (807)
T KOG0066|consen 636 KLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKF--NLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARV 713 (807)
T ss_pred CCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhc--CCChHHHHHHhhhhhhhhccceEeeeecCCcchHHH
Confidence 998877766433221 2244444321 1 11111111110 0233456666666554333 89999999
Q ss_pred HHHHHHHhhccccCCCcEEEEEecCCCCC
Q 002961 518 TLNQLLVCLDGFEGRGNVITIASTNRPDI 546 (862)
Q Consensus 518 ~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~ 546 (862)
+++.|. +..++-+++..+||..+.
T Consensus 714 alaeLa-----l~~PDvlILDEPTNNLDI 737 (807)
T KOG0066|consen 714 ALAELA-----LGGPDVLILDEPTNNLDI 737 (807)
T ss_pred HHHHHh-----cCCCCEEEecCCCCCcch
Confidence 999886 444555566688887653
No 80
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=4.8e-11 Score=139.87 Aligned_cols=184 Identities=17% Similarity=0.210 Sum_probs=124.8
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCc------------eeee-ecc-----cchhhh-c----ccchhhHHHHHHH
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------FFSI-SAS-----QFVEIY-V----GVGASRVRSLYQE 483 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~------------~~~i-~~~-----~~~~~~-~----gq~~~~l~~~f~~ 483 (862)
+.+..++|+||+|+||||+++.|+..+.+. .+.+ +|. .+.+.+ + ..+.+.++.+.+.
T Consensus 36 RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~ 115 (700)
T PRK12323 36 RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDK 115 (700)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHH
Confidence 345678999999999999999999987651 1111 000 000110 0 1123445666665
Q ss_pred HHh----cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccc
Q 002961 484 AKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDR 559 (862)
Q Consensus 484 a~~----~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~ 559 (862)
+.. ....|++|||+|.+... ..|.||..|+.. ..+++||.+||.++.|.+.+++ |+ .
T Consensus 116 ~~~~P~~gr~KViIIDEah~Ls~~--------------AaNALLKTLEEP--P~~v~FILaTtep~kLlpTIrS--RC-q 176 (700)
T PRK12323 116 AVYAPTAGRFKVYMIDEVHMLTNH--------------AFNAMLKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-L 176 (700)
T ss_pred HHhchhcCCceEEEEEChHhcCHH--------------HHHHHHHhhccC--CCCceEEEEeCChHhhhhHHHH--HH-H
Confidence 543 23569999999998653 678999998854 4578888899999999999999 55 3
Q ss_pred cccCCCCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 560 KIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 560 ~I~~~~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
.+.|..++.++..+.++..+....+. ++..+..|+....| +.++..+++..+.. .+...||.+++.+.+.
T Consensus 177 ~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~G-s~RdALsLLdQaia----~~~~~It~~~V~~~LG 247 (700)
T PRK12323 177 QFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQG-SMRDALSLTDQAIA----YSAGNVSEEAVRGMLG 247 (700)
T ss_pred hcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH----hccCCcCHHHHHHHhC
Confidence 89999999999998888777654433 23345667777766 56667677776543 2334588777766543
No 81
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.24 E-value=8.3e-11 Score=135.63 Aligned_cols=189 Identities=19% Similarity=0.232 Sum_probs=120.1
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccC
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 506 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~ 506 (862)
..++|+||+|+|||+|++++++.+ +..+.+++...+...+.......-...|... ...+++++|||++.+.+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~-~~~~dvLiIDDiq~l~~k~-- 218 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQF-YRNVDALFIEDIEVFSGKG-- 218 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHH-cccCCEEEEcchhhhcCCh--
Confidence 458999999999999999999876 5677777766554432221111011123322 2346799999999875421
Q ss_pred cCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCC---CCCccccCCCCcc--ccccCCCCCHHhHHHHHHHHHcc
Q 002961 507 IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHARK 581 (862)
Q Consensus 507 ~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~---~Ld~aLlrpgRfd--~~I~~~~P~~~~R~~Il~~~l~~ 581 (862)
. ....++..++.+...+..+|+++++.|. .+++.|.+ ||. ..+.+++|+.++|..|++..+..
T Consensus 219 -------~---~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 219 -------A---TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred -------h---hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 1 1223333333332334456666655554 46788888 774 78899999999999999998876
Q ss_pred CCCCC-cccHHHHHhhcCCCCHHHHHHHHHHHHH---HHHHhCCcccCHHHHHHHHHH
Q 002961 582 KPMAD-DVDYLAVASMTDGMVGAELANIVEVAAI---NMMRDGRTEITTDDLLQAAQI 635 (862)
Q Consensus 582 ~~~~~-~~dl~~lA~~t~G~s~adI~~lv~~A~~---~A~~~~~~~It~edl~~Al~~ 635 (862)
..+.- +..+..++....+ +.+.+.++++..+. .+...+ ..||.+++.+++..
T Consensus 287 ~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~~-~~i~~~~~~~~l~~ 342 (445)
T PRK12422 287 LSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLSH-QLLYVDDIKALLHD 342 (445)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHH
Confidence 55433 3334557776664 55667777776642 222233 46999999998864
No 82
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.23 E-value=8.7e-11 Score=123.25 Aligned_cols=181 Identities=16% Similarity=0.197 Sum_probs=116.7
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhh
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRE 503 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~ 503 (862)
..+..++|+||+|||||+|+++++..+ +.++.++++..+... ...++.... .+.+++|||++.+...
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~~~~~--~~~lLvIDdi~~l~~~ 105 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA--------DPEVLEGLE--QADLVCLDDVEAIAGQ 105 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh--------HHHHHhhcc--cCCEEEEeChhhhcCC
Confidence 445679999999999999999999876 356677776654321 122333222 2458999999987432
Q ss_pred ccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCC---ccccCCCCc--cccccCCCCCHHhHHHHHHHH
Q 002961 504 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD---PALVRPGRF--DRKIFIPKPGLIGRMEILKVH 578 (862)
Q Consensus 504 ~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld---~aLlrpgRf--d~~I~~~~P~~~~R~~Il~~~ 578 (862)
. . ....+...++.....+..+|+.++..+..++ +.+.+ |+ ..+|.+|+|+.+++..+++.+
T Consensus 106 ~---------~---~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~ 171 (226)
T TIGR03420 106 P---------E---WQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSR 171 (226)
T ss_pred h---------H---HHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHH
Confidence 1 0 1223333333322223344444444443332 56776 55 478999999999999999987
Q ss_pred HccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 002961 579 ARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 633 (862)
Q Consensus 579 l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al 633 (862)
+....+. ++..+..|+.. -+-+.+++.++++.+...+...+ ..||.+.+.+++
T Consensus 172 ~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 172 AARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred HHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHh
Confidence 7544332 33345667775 45588899999998876555545 469998888765
No 83
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=1.5e-10 Score=130.74 Aligned_cols=184 Identities=20% Similarity=0.244 Sum_probs=123.9
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceeee--ecc------cc-----hhhh-cc----cchhhHHHHHHHHHhc-
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI--SAS------QF-----VEIY-VG----VGASRVRSLYQEAKDN- 487 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i--~~~------~~-----~~~~-~g----q~~~~l~~~f~~a~~~- 487 (862)
+.+..++|+||+|+||||+++++|..+....+.. .|+ .+ ...+ ++ .....++.+.+.+...
T Consensus 36 ~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p 115 (363)
T PRK14961 36 RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSP 115 (363)
T ss_pred CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCc
Confidence 3456689999999999999999999875321110 010 00 0000 00 1223345555554322
Q ss_pred ---CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCC
Q 002961 488 ---APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIP 564 (862)
Q Consensus 488 ---~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~ 564 (862)
...+++|||+|.+... ..+.|+..++... ..+.+|.+|+.++.+.+++++ |+ ..+.|+
T Consensus 116 ~~~~~kviIIDEa~~l~~~--------------a~naLLk~lEe~~--~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~ 176 (363)
T PRK14961 116 SKSRFKVYLIDEVHMLSRH--------------SFNALLKTLEEPP--QHIKFILATTDVEKIPKTILS--RC-LQFKLK 176 (363)
T ss_pred ccCCceEEEEEChhhcCHH--------------HHHHHHHHHhcCC--CCeEEEEEcCChHhhhHHHHh--hc-eEEeCC
Confidence 2358999999988543 5677888887543 456677777778889999988 65 478999
Q ss_pred CCCHHhHHHHHHHHHccCCC-CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 565 KPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 565 ~P~~~~R~~Il~~~l~~~~~-~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
+|+.++...++...+..... .++..+..++..+.| +++++.++++.+... +...||.+++.+++.
T Consensus 177 ~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 177 IISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 99999999999988766543 234456667777766 677777777766432 456799999988764
No 84
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=1.3e-10 Score=136.64 Aligned_cols=184 Identities=18% Similarity=0.223 Sum_probs=125.2
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceee--eecc------cc-----hhh---hc--ccchhhHHHHHHHHHh--
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISAS------QF-----VEI---YV--GVGASRVRSLYQEAKD-- 486 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~--i~~~------~~-----~~~---~~--gq~~~~l~~~f~~a~~-- 486 (862)
+.+..++|+||+|+||||+++++|..+++..+. ..|+ .+ ... .. ......++.+.+.+..
T Consensus 35 rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P 114 (702)
T PRK14960 35 RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAP 114 (702)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhh
Confidence 345678999999999999999999987542110 0011 00 000 00 1123345666655532
Q ss_pred --cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCC
Q 002961 487 --NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIP 564 (862)
Q Consensus 487 --~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~ 564 (862)
....|++|||+|.+... ..+.|+..|+.. ...+.+|++|+.+..+++.+++ |+. ++.|.
T Consensus 115 ~~gk~KV~IIDEVh~LS~~--------------A~NALLKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RCq-~feFk 175 (702)
T PRK14960 115 TQGRFKVYLIDEVHMLSTH--------------SFNALLKTLEEP--PEHVKFLFATTDPQKLPITVIS--RCL-QFTLR 175 (702)
T ss_pred hcCCcEEEEEechHhcCHH--------------HHHHHHHHHhcC--CCCcEEEEEECChHhhhHHHHH--hhh-eeecc
Confidence 23469999999988543 678888888854 3466777788888888899988 653 89999
Q ss_pred CCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 565 KPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 565 ~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
+++.++....++..+....+. ++..+..++..+.| +.+++.+++..+... +...||.+++...+.
T Consensus 176 pLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLRdALnLLDQaIay----g~g~IT~edV~~lLG 241 (702)
T PRK14960 176 PLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLRDALSLTDQAIAY----GQGAVHHQDVKEMLG 241 (702)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHhc
Confidence 999999999998887665433 34456677877765 677777877766532 455799999877654
No 85
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.22 E-value=5.5e-11 Score=146.92 Aligned_cols=193 Identities=24% Similarity=0.311 Sum_probs=132.1
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc----------cCceeeeecccchh--hhcccchhhHHHHHHHHHh-cCCceeEh
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFVE--IYVGVGASRVRSLYQEAKD-NAPSVVFI 494 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l----------~~~~~~i~~~~~~~--~~~gq~~~~l~~~f~~a~~-~~p~iL~i 494 (862)
...+++|+||||||||++++.||..+ +..++.++++.+.. .|.|+....++.+++.+.. ..+.||||
T Consensus 207 ~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfI 286 (852)
T TIGR03345 207 RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFI 286 (852)
T ss_pred CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 34578999999999999999999875 24456666666542 4777777888999998865 45789999
Q ss_pred HHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCC-----CCCCccccCCCCccccccCCCCCHH
Q 002961 495 DELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP-----DILDPALVRPGRFDRKIFIPKPGLI 569 (862)
Q Consensus 495 DEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~-----~~Ld~aLlrpgRfd~~I~~~~P~~~ 569 (862)
||++.+.+..+. +++.. .-+.|+-. ..++.+.+|+||+.. -.+|++|.| ||. .|.++.|+.+
T Consensus 287 DEih~l~~~g~~---~~~~d---~~n~Lkp~----l~~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~ 353 (852)
T TIGR03345 287 DEAHTLIGAGGQ---AGQGD---AANLLKPA----LARGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEE 353 (852)
T ss_pred eChHHhccCCCc---ccccc---HHHHhhHH----hhCCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHH
Confidence 999999765321 11111 11223322 246789999999764 348999999 996 8999999999
Q ss_pred hHHHHHHHHHccCC----C-CCcccHHHHHhhcCCC-----CHHHHHHHHHHHHHHHHHh-CCcccCHHHHHHHH
Q 002961 570 GRMEILKVHARKKP----M-ADDVDYLAVASMTDGM-----VGAELANIVEVAAINMMRD-GRTEITTDDLLQAA 633 (862)
Q Consensus 570 ~R~~Il~~~l~~~~----~-~~~~dl~~lA~~t~G~-----s~adI~~lv~~A~~~A~~~-~~~~It~edl~~Al 633 (862)
++..||+....... + ..+..+..++..+.+| -|.....++.+|+...... ....+..+++...+
T Consensus 354 ~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 354 TAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred HHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 99999876554321 1 2345566677766665 3456668888887655443 33344555555443
No 86
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.22 E-value=1.7e-10 Score=136.85 Aligned_cols=184 Identities=18% Similarity=0.206 Sum_probs=124.6
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceee--eecc------c-----chhh-hc----ccchhhHHHHHHHHHh--
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISAS------Q-----FVEI-YV----GVGASRVRSLYQEAKD-- 486 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~--i~~~------~-----~~~~-~~----gq~~~~l~~~f~~a~~-- 486 (862)
+.+..++|+||+|+||||++++|+..+++..+. ..|+ . +... .+ ..+...++.+++.+..
T Consensus 36 RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P 115 (830)
T PRK07003 36 RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAP 115 (830)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhcc
Confidence 345668999999999999999999987642110 0111 0 0000 00 1122345666665542
Q ss_pred --cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCC
Q 002961 487 --NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIP 564 (862)
Q Consensus 487 --~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~ 564 (862)
....|++|||+|.+... ..|.||..|+.. ..++.||.+||.+..|.+.|++ |+ .++.|.
T Consensus 116 ~~gr~KVIIIDEah~LT~~--------------A~NALLKtLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk 176 (830)
T PRK07003 116 VDARFKVYMIDEVHMLTNH--------------AFNAMLKTLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLK 176 (830)
T ss_pred ccCCceEEEEeChhhCCHH--------------HHHHHHHHHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecC
Confidence 23468999999998543 678889888854 3478889999999999999999 55 389999
Q ss_pred CCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 565 KPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 565 ~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
.++.++...+|+..+....+. ++..+..|+....|. .++..+++..+... +...|+.+++...+.
T Consensus 177 ~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs-mRdALsLLdQAia~----~~~~It~~~V~~~LG 242 (830)
T PRK07003 177 QMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGS-MRDALSLTDQAIAY----SANEVTETAVSGMLG 242 (830)
T ss_pred CcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHHHh----ccCCcCHHHHHHHhC
Confidence 999999999998887654443 445567788888774 45555776665532 233577777766553
No 87
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.22 E-value=1.5e-10 Score=134.90 Aligned_cols=187 Identities=19% Similarity=0.287 Sum_probs=129.8
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceeee------------ecccchhh------hc----ccchhhHHHHHHHH
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI------------SASQFVEI------YV----GVGASRVRSLYQEA 484 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i------------~~~~~~~~------~~----gq~~~~l~~~f~~a 484 (862)
+.+..++|+||+|+||||+++++|..+++..... +|..+... .+ ..+...++.+++.+
T Consensus 41 ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a 120 (507)
T PRK06645 41 RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESA 120 (507)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHH
Confidence 4467899999999999999999999875432100 01010000 01 11234456777666
Q ss_pred Hhc----CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCcccc
Q 002961 485 KDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRK 560 (862)
Q Consensus 485 ~~~----~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~ 560 (862)
... ...|++|||++.+... .++.|+..|+.. ...+++|.+|+.++.+++++++ |+ ..
T Consensus 121 ~~~P~~~~~KVvIIDEa~~Ls~~--------------a~naLLk~LEep--p~~~vfI~aTte~~kI~~tI~S--Rc-~~ 181 (507)
T PRK06645 121 EYKPLQGKHKIFIIDEVHMLSKG--------------AFNALLKTLEEP--PPHIIFIFATTEVQKIPATIIS--RC-QR 181 (507)
T ss_pred HhccccCCcEEEEEEChhhcCHH--------------HHHHHHHHHhhc--CCCEEEEEEeCChHHhhHHHHh--cc-eE
Confidence 433 2458999999987542 678888888853 4567777778888899999998 55 37
Q ss_pred ccCCCCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 561 IFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 561 I~~~~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
+.|.+++.++...+++..+...... ++..+..++..+.| +.+++.++++.+...+... ...||.+++.+.+.
T Consensus 182 ~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~llg 254 (507)
T PRK06645 182 YDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SARDAVSILDQAASMSAKS-DNIISPQVINQMLG 254 (507)
T ss_pred EEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHHC
Confidence 8899999999999999888765443 33456778888776 7788888888876543211 23699999888765
No 88
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.21 E-value=1.5e-10 Score=123.03 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=113.1
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhcc---CceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhcc
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAG---VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 505 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~---~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~ 505 (862)
+..++|+||+|||||+|+++++..+. ..+.+++...... ....+.+.... .++++|||++.+.+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~-- 112 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGD-- 112 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhh--CCEEEEeChhhhcCC--
Confidence 35799999999999999999998653 3344554433111 11222333322 258999999987532
Q ss_pred CcCCCCchhHHHHHHHHHHhhccccCCCc-EEEEEecCCCCC---CCccccCCCCcc--ccccCCCCCHHhHHHHHHHHH
Q 002961 506 LIKGSGGQERDATLNQLLVCLDGFEGRGN-VITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 506 ~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~-vlvI~tTN~~~~---Ld~aLlrpgRfd--~~I~~~~P~~~~R~~Il~~~l 579 (862)
......+ ...++.....++ .+++.+++.|.. +.|.|++ |+. .++.+.+|+.+++.++++..+
T Consensus 113 -------~~~~~~l---f~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 113 -------ELWEMAI---FDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRA 180 (235)
T ss_pred -------HHHHHHH---HHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHH
Confidence 1111122 222222222333 355666666665 5789998 664 789999999999999999866
Q ss_pred ccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 002961 580 RKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 633 (862)
Q Consensus 580 ~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al 633 (862)
....+. ++..+..|+...+| +.+.+.++++.....+. .....||.+.+.+++
T Consensus 181 ~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l-~~~~~it~~~~k~~l 233 (235)
T PRK08084 181 RLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRASI-TAQRKLTIPFVKEIL 233 (235)
T ss_pred HHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHH
Confidence 554333 33446667777765 56667788877543333 334469999988876
No 89
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=2.2e-10 Score=134.17 Aligned_cols=184 Identities=15% Similarity=0.184 Sum_probs=126.4
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceee--eeccc-----------chhh-----hcccchhhHHHHHHHHHh--
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISASQ-----------FVEI-----YVGVGASRVRSLYQEAKD-- 486 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~--i~~~~-----------~~~~-----~~gq~~~~l~~~f~~a~~-- 486 (862)
+.+..++|+||+|+||||+++++|..+++..+. -.|+. +.+. -...+...++.+.+.+..
T Consensus 36 ~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p 115 (509)
T PRK14958 36 YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAP 115 (509)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhcc
Confidence 445678999999999999999999987543110 01110 0000 011223345666665543
Q ss_pred --cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCC
Q 002961 487 --NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIP 564 (862)
Q Consensus 487 --~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~ 564 (862)
....|++|||+|.+... ..+.|+..|+... ..+.+|.+|+.+..+++.+++ |+ ..+.|.
T Consensus 116 ~~~~~kV~iIDE~~~ls~~--------------a~naLLk~LEepp--~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~ 176 (509)
T PRK14958 116 TKGRFKVYLIDEVHMLSGH--------------SFNALLKTLEEPP--SHVKFILATTDHHKLPVTVLS--RC-LQFHLA 176 (509)
T ss_pred ccCCcEEEEEEChHhcCHH--------------HHHHHHHHHhccC--CCeEEEEEECChHhchHHHHH--Hh-hhhhcC
Confidence 23459999999998654 6788998888653 457777777888889989998 55 378899
Q ss_pred CCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 565 KPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 565 ~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
+++.++....+...+....+. ++..+..++..+.| +.+++.+++..+... +...||.+++...+.
T Consensus 177 ~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~lg 242 (509)
T PRK14958 177 QLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVRDALSLLDQSIAY----GNGKVLIADVKTMLG 242 (509)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHHC
Confidence 999988888888777655433 34456677777765 777888888776432 455799999988765
No 90
>PRK08727 hypothetical protein; Validated
Probab=99.18 E-value=2.3e-10 Score=121.46 Aligned_cols=180 Identities=22% Similarity=0.265 Sum_probs=114.0
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccC
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 506 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~ 506 (862)
..++|+||+|||||+|+.+++..+ +..+.++++.++. ..+...++... ..++|+|||++.+....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l~--~~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEALE--GRSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHHh--cCCEEEEeCcccccCCh--
Confidence 459999999999999999998764 4455555544321 12233444332 34689999998775321
Q ss_pred cCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCC---CccccCCCCc--cccccCCCCCHHhHHHHHHHHHcc
Q 002961 507 IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL---DPALVRPGRF--DRKIFIPKPGLIGRMEILKVHARK 581 (862)
Q Consensus 507 ~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~L---d~aLlrpgRf--d~~I~~~~P~~~~R~~Il~~~l~~ 581 (862)
.. ...++..++.....+.-+|+.+.+.|..+ ++.|++ || ..++.+++|+.+++..|++.++..
T Consensus 110 -------~~---~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 110 -------ED---EVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred -------HH---HHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 11 12233333333333333555555566655 688988 75 467899999999999999987654
Q ss_pred CCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 002961 582 KPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 635 (862)
Q Consensus 582 ~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 635 (862)
..+. ++..+..|+..+.| +.+.+.++++.....+...+ ..||.+.+.+++..
T Consensus 178 ~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 178 RGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAAK-RRVTVPFLRRVLEE 230 (233)
T ss_pred cCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHhh
Confidence 4333 34456678888765 34445566665544344444 47999999988753
No 91
>PRK05642 DNA replication initiation factor; Validated
Probab=99.18 E-value=3.6e-10 Score=119.98 Aligned_cols=178 Identities=16% Similarity=0.202 Sum_probs=118.6
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccC
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 506 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~ 506 (862)
..++|+||+|+|||+|++++++++ +..+.+++..++... ...+.+.+.. .++++||+++.+.+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~d~LiiDDi~~~~~~~-- 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQ--YELVCLDDLDVIAGKA-- 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhh--CCEEEEechhhhcCCh--
Confidence 568999999999999999998754 456667766554321 1223333332 2589999999774331
Q ss_pred cCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCC---CCccccCCCCc--cccccCCCCCHHhHHHHHHHHHcc
Q 002961 507 IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRF--DRKIFIPKPGLIGRMEILKVHARK 581 (862)
Q Consensus 507 ~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~---Ld~aLlrpgRf--d~~I~~~~P~~~~R~~Il~~~l~~ 581 (862)
. ....|+..++.+..++..++++++..+.. ..|.|++ || ..++.+.+|+.+++..+++..+..
T Consensus 114 -------~---~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~ 181 (234)
T PRK05642 114 -------D---WEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASR 181 (234)
T ss_pred -------H---HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 1 22345555555555566777877765543 4688988 76 467788999999999999966654
Q ss_pred CCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 002961 582 KPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 633 (862)
Q Consensus 582 ~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al 633 (862)
..+. ++..+..++...+| +.+.+.++++..-..+. .....||..-+++++
T Consensus 182 ~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l-~~~~~it~~~~~~~L 232 (234)
T PRK05642 182 RGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASL-QAQRKLTIPFLKETL 232 (234)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH-HcCCcCCHHHHHHHh
Confidence 4332 33445667777664 67778888887654333 333569998888776
No 92
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.16 E-value=3.8e-10 Score=118.95 Aligned_cols=176 Identities=14% Similarity=0.124 Sum_probs=114.1
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhh
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRE 503 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~ 503 (862)
..+..++|+|++|||||+|+++++... +..+.++++..+... +. ....+++++|||++.+...
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~--~~~~~~~liiDdi~~l~~~ 105 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FD--FDPEAELYAVDDVERLDDA 105 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hh--hcccCCEEEEeChhhcCch
Confidence 445679999999999999999999865 556667766543211 11 1223568999999876422
Q ss_pred ccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCC-CC--CCCccccCCCCc--cccccCCCCCHHhHHHHHHHH
Q 002961 504 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR-PD--ILDPALVRPGRF--DRKIFIPKPGLIGRMEILKVH 578 (862)
Q Consensus 504 ~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~-~~--~Ld~aLlrpgRf--d~~I~~~~P~~~~R~~Il~~~ 578 (862)
....|+..++.....+..+++.+++. +. .+.+.|.+ || ...+.+++|+.+++..++...
T Consensus 106 --------------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 106 --------------QQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred --------------HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHH
Confidence 22334444444444444334444433 21 24566666 65 468999999998898998877
Q ss_pred HccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 579 ARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 579 l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
.....+. ++..+..++...+| +.+++.++++.....+...+ ..||...+.+++.
T Consensus 170 ~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 170 AAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred HHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 6554333 33346667775554 77778888887554444444 6899999988874
No 93
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.16 E-value=4.2e-10 Score=133.83 Aligned_cols=189 Identities=20% Similarity=0.226 Sum_probs=119.6
Q ss_pred CCe-EEEECCCCCchhHHHHHHHhhc----------cCceeeeecccchhhh---------c-cc-------chhhHHHH
Q 002961 429 PGG-ILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFVEIY---------V-GV-------GASRVRSL 480 (862)
Q Consensus 429 ~~~-vlL~GpnGtGKTtLakaLA~~l----------~~~~~~i~~~~~~~~~---------~-gq-------~~~~l~~~ 480 (862)
+.+ ++|+|+||||||++++.+...+ ...+++|+|..+...+ + +. ....+..+
T Consensus 780 pnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerL 859 (1164)
T PTZ00112 780 SNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRL 859 (1164)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHH
Confidence 444 4699999999999999998765 1456788885433221 0 11 11223455
Q ss_pred HHHHHh--cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCC---CCCCCccccCCC
Q 002961 481 YQEAKD--NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR---PDILDPALVRPG 555 (862)
Q Consensus 481 f~~a~~--~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~---~~~Ld~aLlrpg 555 (862)
|..+.. ....||+|||||.+.... ..+|..|+.... .....++||+++|. ++.++|.+.+
T Consensus 860 F~~L~k~~r~v~IIILDEID~L~kK~-----------QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS-- 924 (1164)
T PTZ00112 860 FNQNKKDNRNVSILIIDEIDYLITKT-----------QKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS-- 924 (1164)
T ss_pred HhhhhcccccceEEEeehHhhhCccH-----------HHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--
Confidence 554422 235689999999986431 124444444322 23457899999986 4557788877
Q ss_pred Cccc-cccCCCCCHHhHHHHHHHHHccC-CCCCcccHHHHHh---hcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHH
Q 002961 556 RFDR-KIFIPKPGLIGRMEILKVHARKK-PMADDVDYLAVAS---MTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 630 (862)
Q Consensus 556 Rfd~-~I~~~~P~~~~R~~Il~~~l~~~-~~~~~~dl~~lA~---~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~ 630 (862)
||.. .|.|++|+.+++.+||+..+... .+.++..+..+|. ...|-. +....+|+.|+.. .+...|+.+|+.
T Consensus 925 RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDA-RKALDILRrAgEi---kegskVT~eHVr 1000 (1164)
T PTZ00112 925 RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDI-RKALQICRKAFEN---KRGQKIVPRDIT 1000 (1164)
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHH-HHHHHHHHHHHhh---cCCCccCHHHHH
Confidence 5443 48889999999999999988753 2223334555555 333433 3333666666543 344589999999
Q ss_pred HHHHHH
Q 002961 631 QAAQIE 636 (862)
Q Consensus 631 ~Al~~~ 636 (862)
.|+...
T Consensus 1001 kAleei 1006 (1164)
T PTZ00112 1001 EATNQL 1006 (1164)
T ss_pred HHHHHH
Confidence 998643
No 94
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=3.4e-10 Score=131.04 Aligned_cols=178 Identities=22% Similarity=0.260 Sum_probs=127.3
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCc------------------------eeeeecccchhhhcccchhhHHHHHH
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------------------FFSISASQFVEIYVGVGASRVRSLYQ 482 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~------------------------~~~i~~~~~~~~~~gq~~~~l~~~f~ 482 (862)
+.+..++|+||+|+||||+++++|..+++. +++++.++ ..+...++.+.+
T Consensus 33 ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie 106 (491)
T PRK14964 33 KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAAS------NTSVDDIKVILE 106 (491)
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEeccc------CCCHHHHHHHHH
Confidence 456789999999999999999999865332 12222211 123345677777
Q ss_pred HHHhc----CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCcc
Q 002961 483 EAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFD 558 (862)
Q Consensus 483 ~a~~~----~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd 558 (862)
.+... ...+++|||++.+... .++.|+..|+... ..+++|.+|+.++.+.+.+++ |+.
T Consensus 107 ~~~~~P~~~~~KVvIIDEah~Ls~~--------------A~NaLLK~LEePp--~~v~fIlatte~~Kl~~tI~S--Rc~ 168 (491)
T PRK14964 107 NSCYLPISSKFKVYIIDEVHMLSNS--------------AFNALLKTLEEPA--PHVKFILATTEVKKIPVTIIS--RCQ 168 (491)
T ss_pred HHHhccccCCceEEEEeChHhCCHH--------------HHHHHHHHHhCCC--CCeEEEEEeCChHHHHHHHHH--hhe
Confidence 66433 3458999999988543 6788999998644 467777788888889999998 553
Q ss_pred ccccCCCCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 559 RKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 559 ~~I~~~~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
.+.|.+++.++....+...+....+. ++..+..++..+.| +.+++.+++..+...+ + ..||.+++.+.+.
T Consensus 169 -~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR~alslLdqli~y~---~-~~It~e~V~~llg 239 (491)
T PRK14964 169 -RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMRNALFLLEQAAIYS---N-NKISEKSVRDLLG 239 (491)
T ss_pred -eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHc
Confidence 78999999999999998887655433 44456677777765 7777888887765432 2 3799999987653
No 95
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.16 E-value=3.7e-10 Score=134.32 Aligned_cols=182 Identities=20% Similarity=0.266 Sum_probs=123.1
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceee--eecccc-----------hhh-hcc----cchhhHHHHHHHHHh---
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISASQF-----------VEI-YVG----VGASRVRSLYQEAKD--- 486 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~--i~~~~~-----------~~~-~~g----q~~~~l~~~f~~a~~--- 486 (862)
.+..++|+||+|+||||+++++|..+++..+. ..|+.. .+. .++ .+...++.+.+.+..
T Consensus 37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~ 116 (647)
T PRK07994 37 LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPA 116 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhh
Confidence 45567999999999999999999987653211 011110 000 011 122345666665542
Q ss_pred -cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCC
Q 002961 487 -NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPK 565 (862)
Q Consensus 487 -~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~ 565 (862)
....|++|||+|.+... .+|.||..|+.. ..++.+|.+|+.+..|.+.+++ |+ ..+.|.+
T Consensus 117 ~g~~KV~IIDEah~Ls~~--------------a~NALLKtLEEP--p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~ 177 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRH--------------SFNALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKA 177 (647)
T ss_pred cCCCEEEEEechHhCCHH--------------HHHHHHHHHHcC--CCCeEEEEecCCccccchHHHh--hh-eEeeCCC
Confidence 23459999999998654 789999999864 4467788788888999999999 54 4899999
Q ss_pred CCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 002961 566 PGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 633 (862)
Q Consensus 566 P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al 633 (862)
++.++....|...+....+. ++..+..++..+.| +.+++.+++..+... +...|+.+++...+
T Consensus 178 Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 178 LDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMRDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 99999999998877654332 34456677877776 556666777765422 33457777766554
No 96
>PRK04195 replication factor C large subunit; Provisional
Probab=99.14 E-value=4.2e-10 Score=131.76 Aligned_cols=176 Identities=23% Similarity=0.315 Sum_probs=118.9
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHh------cCCceeEhHHHHHhhh
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKD------NAPSVVFIDELDAVGR 502 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~------~~p~iL~iDEid~l~~ 502 (862)
+..++|+||||+||||++++||.+++..++.++.++.... ..+..+...+.. ..+.+|+|||+|.+..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHG 112 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccc
Confidence 6679999999999999999999999999999887763321 122222222221 2466899999998754
Q ss_pred hccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCc-cccCCCCccccccCCCCCHHhHHHHHHHHHcc
Q 002961 503 ERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP-ALVRPGRFDRKIFIPKPGLIGRMEILKVHARK 581 (862)
Q Consensus 503 ~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~-aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~ 581 (862)
... +..+..|+..++. .+..+|+++|.+..+++ .+++ |+ ..|.|++|+..+...+++..+..
T Consensus 113 ~~d----------~~~~~aL~~~l~~----~~~~iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~ 175 (482)
T PRK04195 113 NED----------RGGARAILELIKK----AKQPIILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRK 175 (482)
T ss_pred ccc----------hhHHHHHHHHHHc----CCCCEEEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 210 1134555555552 23356667788887776 5655 33 48999999999999999988865
Q ss_pred CCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 002961 582 KPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 633 (862)
Q Consensus 582 ~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al 633 (862)
..+. ++..+..|+..+.| |++.+++.... ...+...|+.+++....
T Consensus 176 egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~--~a~~~~~it~~~v~~~~ 222 (482)
T PRK04195 176 EGIECDDEALKEIAERSGG----DLRSAINDLQA--IAEGYGKLTLEDVKTLG 222 (482)
T ss_pred cCCCCCHHHHHHHHHHcCC----CHHHHHHHHHH--HhcCCCCCcHHHHHHhh
Confidence 4432 34557778877755 56666665543 33456679999887664
No 97
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.14 E-value=3e-10 Score=131.44 Aligned_cols=189 Identities=16% Similarity=0.221 Sum_probs=125.1
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc-----cCceeeeecccchhhhcccch---hhHHHHHHHHHhcCCceeEhHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGA---SRVRSLYQEAKDNAPSVVFIDELDAVG 501 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l-----~~~~~~i~~~~~~~~~~gq~~---~~l~~~f~~a~~~~p~iL~iDEid~l~ 501 (862)
..++|+|++|+|||+|+++++..+ +..+.++++.++...+..... ..+..+.... ..+++|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEecccccc
Confidence 358999999999999999999854 356677777766554332211 1122222222 346799999998775
Q ss_pred hhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCC---CCccccCCCCc--cccccCCCCCHHhHHHHHH
Q 002961 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRF--DRKIFIPKPGLIGRMEILK 576 (862)
Q Consensus 502 ~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~---Ld~aLlrpgRf--d~~I~~~~P~~~~R~~Il~ 576 (862)
+.. . ....|...++.....++.+|+.+...|.. +++.|.+ || ..++.+.+|+.++|.+|++
T Consensus 220 ~k~---------~---~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 220 YKE---------K---TNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred CCH---------H---HHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHH
Confidence 321 1 23344444444444445455555545543 5678888 66 4677899999999999999
Q ss_pred HHHccCCC---CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhC-CcccCHHHHHHHHHH
Q 002961 577 VHARKKPM---ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG-RTEITTDDLLQAAQI 635 (862)
Q Consensus 577 ~~l~~~~~---~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~-~~~It~edl~~Al~~ 635 (862)
..+....+ .++..+..|+....| +++.+..+++.+...+.... ...||.+.+.+++..
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRD 347 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhh
Confidence 99876432 233445667777765 77889999988875555442 357999999998863
No 98
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=6.1e-10 Score=132.24 Aligned_cols=184 Identities=17% Similarity=0.202 Sum_probs=124.9
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCc------------eeee-ecccc-----hhh-hc----ccchhhHHHHHHH
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------FFSI-SASQF-----VEI-YV----GVGASRVRSLYQE 483 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~------------~~~i-~~~~~-----~~~-~~----gq~~~~l~~~f~~ 483 (862)
+.+..++|+||+|+||||+++++|..+.+. .+.+ +|..+ ... .+ ..+.+.++.+.+.
T Consensus 36 rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~ 115 (618)
T PRK14951 36 RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQ 115 (618)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHH
Confidence 445668999999999999999999887541 1111 01000 000 00 1122345666666
Q ss_pred HHhc----CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccc
Q 002961 484 AKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDR 559 (862)
Q Consensus 484 a~~~----~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~ 559 (862)
+... ...|++|||+|.+... .+|.|+..|+.. ...+.+|.+|+.+..+.+.+++ |+ .
T Consensus 116 ~~~~p~~g~~KV~IIDEvh~Ls~~--------------a~NaLLKtLEEP--P~~~~fIL~Ttd~~kil~TIlS--Rc-~ 176 (618)
T PRK14951 116 AVYKPVQGRFKVFMIDEVHMLTNT--------------AFNAMLKTLEEP--PEYLKFVLATTDPQKVPVTVLS--RC-L 176 (618)
T ss_pred HHhCcccCCceEEEEEChhhCCHH--------------HHHHHHHhcccC--CCCeEEEEEECCchhhhHHHHH--hc-e
Confidence 5432 2458999999998654 678888888853 3567777787888888889998 54 4
Q ss_pred cccCCCCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 560 KIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 560 ~I~~~~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
++.|..++.++....++..+....+. ++..+..|+..+.| +.+++.+++..+... +...||.+++.+.+.
T Consensus 177 ~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~Lg 247 (618)
T PRK14951 177 QFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-SMRDALSLTDQAIAF----GSGQLQEAAVRQMLG 247 (618)
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 89999999999999998887655443 33446777887776 677777777665532 345688888877654
No 99
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=7.2e-10 Score=133.90 Aligned_cols=183 Identities=18% Similarity=0.195 Sum_probs=122.2
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceee--eeccc------chhh------hcc----cchhhHHHHHHHHHh--
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISASQ------FVEI------YVG----VGASRVRSLYQEAKD-- 486 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~--i~~~~------~~~~------~~g----q~~~~l~~~f~~a~~-- 486 (862)
+.+..++|+||+|+||||++++||..+++..+. ..|+. +... .+. .....++.+.+.+..
T Consensus 36 rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P 115 (944)
T PRK14949 36 RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRP 115 (944)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhh
Confidence 345567999999999999999999988653110 01110 0000 011 122335666655542
Q ss_pred --cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCC
Q 002961 487 --NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIP 564 (862)
Q Consensus 487 --~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~ 564 (862)
....|++|||++.+... .++.||..|+... .++.+|++|+.+..|.+.|++ |+ .++.|.
T Consensus 116 ~~gk~KViIIDEAh~LT~e--------------AqNALLKtLEEPP--~~vrFILaTTe~~kLl~TIlS--RC-q~f~fk 176 (944)
T PRK14949 116 SRGRFKVYLIDEVHMLSRS--------------SFNALLKTLEEPP--EHVKFLLATTDPQKLPVTVLS--RC-LQFNLK 176 (944)
T ss_pred hcCCcEEEEEechHhcCHH--------------HHHHHHHHHhccC--CCeEEEEECCCchhchHHHHH--hh-eEEeCC
Confidence 23459999999998654 7899999998643 467777778888889999998 54 479999
Q ss_pred CCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 002961 565 KPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 633 (862)
Q Consensus 565 ~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al 633 (862)
+++.++....|+..+....+. .+..+..|+..+.| +.+++.+++..+.. . +...++.+.+...+
T Consensus 177 pLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~ALnLLdQala--~--~~~~It~~~V~~ll 241 (944)
T PRK14949 177 SLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDALSLTDQAIA--F--GGGQVMLTQVQTML 241 (944)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH--h--cCCcccHHHHHHHh
Confidence 999999999888877654332 33456677777776 56667788876652 2 33457666665543
No 100
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.13 E-value=4.1e-10 Score=121.58 Aligned_cols=182 Identities=21% Similarity=0.200 Sum_probs=113.4
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchh--hhcccc----hhhH---------------------HHH
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE--IYVGVG----ASRV---------------------RSL 480 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~--~~~gq~----~~~l---------------------~~~ 480 (862)
.+..++|.||+|||||++++.|+..++.++..+++..... ..+|.. ...+ ..+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 3567899999999999999999999999999887654221 122211 0000 011
Q ss_pred HHHHHhcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc--------------CCCcEEEEEecCCCC-
Q 002961 481 YQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--------------GRGNVITIASTNRPD- 545 (862)
Q Consensus 481 f~~a~~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~--------------~~~~vlvI~tTN~~~- 545 (862)
+..+ . .+.++++||++.+... +.+.|+..|+.-. .+.++.||+|+|...
T Consensus 100 ~~A~-~-~g~~lllDEi~r~~~~--------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~ 163 (262)
T TIGR02640 100 TLAV-R-EGFTLVYDEFTRSKPE--------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEY 163 (262)
T ss_pred HHHH-H-cCCEEEEcchhhCCHH--------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccc
Confidence 2112 2 2458999999987544 5666666665311 113577999999763
Q ss_pred ----CCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCCCCCcccHHH---HHhh---c---CCCCHHHHHHHHHHH
Q 002961 546 ----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLA---VASM---T---DGMVGAELANIVEVA 612 (862)
Q Consensus 546 ----~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~~~~~~dl~~---lA~~---t---~G~s~adI~~lv~~A 612 (862)
.++++|++ || ..+.++.|+.++..+|+..++. ..+ ..... ++.. . ...+ ++.++..+
T Consensus 164 ~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~-~~~~~iv~~~~~~R~~~~~~~~~---~r~~i~~~ 233 (262)
T TIGR02640 164 AGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAE-DSAATIVRLVREFRASGDEITSG---LRASLMIA 233 (262)
T ss_pred cceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCH-HHHHHHHHHHHHHHhhCCccCCc---HHHHHHHH
Confidence 46888998 88 4889999999999999998752 221 11111 1111 1 1122 33444444
Q ss_pred HHHHHHhCCcccCHHHHHHHHHH
Q 002961 613 AINMMRDGRTEITTDDLLQAAQI 635 (862)
Q Consensus 613 ~~~A~~~~~~~It~edl~~Al~~ 635 (862)
...+....+..++.+|+.+.+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~ 256 (262)
T TIGR02640 234 EVATQQDIPVDVDDEDFVDLCID 256 (262)
T ss_pred HHHHHcCCCCCCCcHHHHHHHHH
Confidence 44444455677788888776653
No 101
>PLN03025 replication factor C subunit; Provisional
Probab=99.13 E-value=8.9e-10 Score=122.32 Aligned_cols=172 Identities=17% Similarity=0.182 Sum_probs=111.9
Q ss_pred eEEEECCCCCchhHHHHHHHhhccC-----ceeeeecccchhhhcccchhhHHHHHHHHHh-------cCCceeEhHHHH
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGV-----NFFSISASQFVEIYVGVGASRVRSLYQEAKD-------NAPSVVFIDELD 498 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~-----~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~-------~~p~iL~iDEid 498 (862)
+++|+||||+||||+++++|..+.. .+..++.++.. +...++........ ..+.+++|||+|
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~------~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d 109 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDR------GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEAD 109 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccc------cHHHHHHHHHHHHhccccCCCCCeEEEEEechh
Confidence 5899999999999999999998622 23344433211 11123333222211 235699999999
Q ss_pred HhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHH
Q 002961 499 AVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH 578 (862)
Q Consensus 499 ~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~ 578 (862)
.+... ..+.|+..|+.+.. ...+|.+||....+.++|++ |+ ..+.|++|+.++...+++..
T Consensus 110 ~lt~~--------------aq~aL~~~lE~~~~--~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i 170 (319)
T PLN03025 110 SMTSG--------------AQQALRRTMEIYSN--TTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKV 170 (319)
T ss_pred hcCHH--------------HHHHHHHHHhcccC--CceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHH
Confidence 98643 45666666765433 34566778888888899998 55 38999999999999999888
Q ss_pred HccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 002961 579 ARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 633 (862)
Q Consensus 579 l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al 633 (862)
+....+. ++..+..++....| +.+.+.+.++.+ ..+...||.+++....
T Consensus 171 ~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq~~-----~~~~~~i~~~~v~~~~ 220 (319)
T PLN03025 171 VEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQAT-----HSGFGFVNQENVFKVC 220 (319)
T ss_pred HHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH-----HhcCCCCCHHHHHHHc
Confidence 7654432 34456777777765 334444444421 1234568988887653
No 102
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.12 E-value=1.8e-10 Score=142.63 Aligned_cols=142 Identities=26% Similarity=0.436 Sum_probs=106.5
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc----------cCceeeeecccch--hhhcccchhhHHHHHHHHHh-cCCceeE
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFV--EIYVGVGASRVRSLYQEAKD-NAPSVVF 493 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l----------~~~~~~i~~~~~~--~~~~gq~~~~l~~~f~~a~~-~~p~iL~ 493 (862)
+...+++|+||||+|||++++.|+..+ +..++.++++.+. ..|.|.....++.+|+.+.. ..++|||
T Consensus 197 ~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILf 276 (857)
T PRK10865 197 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILF 276 (857)
T ss_pred CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEE
Confidence 344578999999999999999999976 5677777777655 33777777788989988654 4678999
Q ss_pred hHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCC-----CCCccccCCCCccccccCCCCCH
Q 002961 494 IDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD-----ILDPALVRPGRFDRKIFIPKPGL 568 (862)
Q Consensus 494 iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~-----~Ld~aLlrpgRfd~~I~~~~P~~ 568 (862)
|||++.+.+.... +|+.. ..+.|. ....++.+.+|++|+..+ .+|+++.| ||+ .|.++.|+.
T Consensus 277 IDEih~l~~~~~~---~~~~d---~~~~lk----p~l~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~ 343 (857)
T PRK10865 277 IDELHTMVGAGKA---DGAMD---AGNMLK----PALARGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSV 343 (857)
T ss_pred EecHHHhccCCCC---ccchh---HHHHhc----chhhcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCH
Confidence 9999999765321 12211 122222 223467899999998866 48999999 998 688999999
Q ss_pred HhHHHHHHHHHcc
Q 002961 569 IGRMEILKVHARK 581 (862)
Q Consensus 569 ~~R~~Il~~~l~~ 581 (862)
+++..|++.....
T Consensus 344 ~~~~~iL~~l~~~ 356 (857)
T PRK10865 344 EDTIAILRGLKER 356 (857)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999876644
No 103
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.12 E-value=5.4e-10 Score=132.53 Aligned_cols=184 Identities=18% Similarity=0.265 Sum_probs=126.1
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceee--eecc-----------cchhh-----hcccchhhHHHHHHHHHh--
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISAS-----------QFVEI-----YVGVGASRVRSLYQEAKD-- 486 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~--i~~~-----------~~~~~-----~~gq~~~~l~~~f~~a~~-- 486 (862)
+.+..++|+||+|+||||++++++..+.+..+. ..|+ .+... ....+...++.+++.+..
T Consensus 36 rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P 115 (709)
T PRK08691 36 RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAP 115 (709)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhh
Confidence 445679999999999999999999987543211 0111 00000 011122345666665432
Q ss_pred --cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCC
Q 002961 487 --NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIP 564 (862)
Q Consensus 487 --~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~ 564 (862)
....|++|||+|.+... .++.||..|+... ..+.+|++||.+..+.+.+++ |+ ..+.|.
T Consensus 116 ~~gk~KVIIIDEad~Ls~~--------------A~NALLKtLEEPp--~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~ 176 (709)
T PRK08691 116 TAGKYKVYIIDEVHMLSKS--------------AFNAMLKTLEEPP--EHVKFILATTDPHKVPVTVLS--RC-LQFVLR 176 (709)
T ss_pred hhCCcEEEEEECccccCHH--------------HHHHHHHHHHhCC--CCcEEEEEeCCccccchHHHH--HH-hhhhcC
Confidence 23469999999876432 6788888888543 467778888889999999987 65 378888
Q ss_pred CCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 565 KPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 565 ~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
+++.++...++...+....+. ++..+..|+..+.| +.+++.+++..+... +...|+.+++...+.
T Consensus 177 ~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slRdAlnLLDqaia~----g~g~It~e~V~~lLG 242 (709)
T PRK08691 177 NMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMRDALSLLDQAIAL----GSGKVAENDVRQMIG 242 (709)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 999999999999888765443 33456777777755 677788888776543 345688888877765
No 104
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=7.4e-10 Score=131.35 Aligned_cols=184 Identities=22% Similarity=0.298 Sum_probs=124.9
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCcee--eeeccc------c-----hhh-h----cccchhhHHHHHHHHHhc-
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF--SISASQ------F-----VEI-Y----VGVGASRVRSLYQEAKDN- 487 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~--~i~~~~------~-----~~~-~----~gq~~~~l~~~f~~a~~~- 487 (862)
+.++.++|+||+|+|||++++.+|..+.+.-. ...|+. + ... . .+.+...++.+.+.+...
T Consensus 36 ~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p 115 (559)
T PRK05563 36 KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAP 115 (559)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCc
Confidence 34566899999999999999999998643210 000110 0 000 0 012234456666665532
Q ss_pred ---CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCC
Q 002961 488 ---APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIP 564 (862)
Q Consensus 488 ---~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~ 564 (862)
...|++|||++.+... .++.|+..|+.. +..+++|.+|+.++.+++.+++ |+. .+.|.
T Consensus 116 ~~~~~kViIIDE~~~Lt~~--------------a~naLLKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~ 176 (559)
T PRK05563 116 SEAKYKVYIIDEVHMLSTG--------------AFNALLKTLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFK 176 (559)
T ss_pred ccCCeEEEEEECcccCCHH--------------HHHHHHHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecC
Confidence 2458999999987543 678888888854 4467777777788999999998 654 68899
Q ss_pred CCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 565 KPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 565 ~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
+|+.++...++...+....+. ++..+..++..+.| +.+++.+++..+... +...||.+++..++.
T Consensus 177 ~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R~al~~Ldq~~~~----~~~~It~~~V~~vlg 242 (559)
T PRK05563 177 RISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMRDALSILDQAISF----GDGKVTYEDALEVTG 242 (559)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----ccCCCCHHHHHHHhC
Confidence 999999999998887665433 33446667777766 777777887766543 244689888877654
No 105
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=7.4e-10 Score=130.46 Aligned_cols=184 Identities=19% Similarity=0.240 Sum_probs=123.9
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceee--eeccc-----------chhhh-c----ccchhhHHHHHHHHHhc-
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISASQ-----------FVEIY-V----GVGASRVRSLYQEAKDN- 487 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~--i~~~~-----------~~~~~-~----gq~~~~l~~~f~~a~~~- 487 (862)
+.+..++|+||+|+||||+++++|..+.+..+. -.|+. +...+ + ......++.+.+.+...
T Consensus 36 ~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p 115 (527)
T PRK14969 36 RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAP 115 (527)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCc
Confidence 345568999999999999999999987542210 01111 00000 0 11223456666665432
Q ss_pred ---CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCC
Q 002961 488 ---APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIP 564 (862)
Q Consensus 488 ---~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~ 564 (862)
...|++|||+|.+... ..|.||..|+.. ...+++|.+|+.+..+.+.+++ |+ ..+.|.
T Consensus 116 ~~~~~kVvIIDEad~ls~~--------------a~naLLK~LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~ 176 (527)
T PRK14969 116 TRGRFKVYIIDEVHMLSKS--------------AFNAMLKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLK 176 (527)
T ss_pred ccCCceEEEEcCcccCCHH--------------HHHHHHHHHhCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcC
Confidence 2458999999887543 678899998864 3467777778888888888888 54 489999
Q ss_pred CCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 565 KPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 565 ~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
+++.++....+...+....+. ++..+..++..+.| +.+++.+++..+... +...|+.+++...+.
T Consensus 177 ~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~al~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 177 QMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMRDALSLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 999999988888777554433 33445667777655 667777888776532 455788888877654
No 106
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.11 E-value=1.4e-09 Score=122.49 Aligned_cols=189 Identities=20% Similarity=0.253 Sum_probs=127.6
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc---cC--ceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhc
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA---GV--NFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRER 504 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l---~~--~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~ 504 (862)
.-++|+|+.|+|||+|++++++.. ++ .+++++...+...++......-..-|..-. .-++++||+++.+.+..
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~ 191 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKE 191 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCCh
Confidence 458999999999999999999865 33 456666555544333222111122233332 34689999999986542
Q ss_pred cCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCC---CccccCCCCcc--ccccCCCCCHHhHHHHHHHHH
Q 002961 505 GLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL---DPALVRPGRFD--RKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 505 ~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~L---d~aLlrpgRfd--~~I~~~~P~~~~R~~Il~~~l 579 (862)
. ....|...++.+...++.+|+.+...|..+ .|.|.+ ||. .++.+.+|+.+.|..||+...
T Consensus 192 ---------~---~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 192 ---------R---TQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred ---------h---HHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 1 234444444555555666777777777665 478888 765 467888999999999999977
Q ss_pred ccCCCCCc-ccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHH
Q 002961 580 RKKPMADD-VDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 636 (862)
Q Consensus 580 ~~~~~~~~-~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~ 636 (862)
....+.-+ .....+|...+ -+.+++..+++.....+...++ .||.+.+.+++...
T Consensus 258 ~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~ 313 (408)
T COG0593 258 EDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTKR-AITIDLVKEILKDL 313 (408)
T ss_pred HhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHh
Confidence 66554433 33455666654 4778888888888777776666 79999988888643
No 107
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.11 E-value=9.1e-10 Score=125.62 Aligned_cols=143 Identities=29% Similarity=0.385 Sum_probs=96.6
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchh-hhcccchhhH-HHHHHH----HHhcCCceeEhHHHHHhhh
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE-IYVGVGASRV-RSLYQE----AKDNAPSVVFIDELDAVGR 502 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~-~~~gq~~~~l-~~~f~~----a~~~~p~iL~iDEid~l~~ 502 (862)
..+++|+||+|||||+++++||..++.+++.++++.+.. .|+|.....+ ..++.. +....++++||||||.+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence 357999999999999999999999999999999887543 4777654432 333322 2334678999999999976
Q ss_pred hccCc---CCCCchhHHHHHHHHHHhhcccc-----------CCCcEEEEEecCCCC-----------------------
Q 002961 503 ERGLI---KGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD----------------------- 545 (862)
Q Consensus 503 ~~~~~---~~Sgge~~r~~l~~LL~~Ld~~~-----------~~~~vlvI~tTN~~~----------------------- 545 (862)
..... .+-+|+ .+++.||..|++.. +....++|.|+|...
T Consensus 188 ~~~~~~~~~d~s~~---~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~g 264 (412)
T PRK05342 188 KSENPSITRDVSGE---GVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIG 264 (412)
T ss_pred ccCCCCcCCCcccH---HHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccC
Confidence 52211 111222 36677777776421 112345555555411
Q ss_pred -----------------------------CCCccccCCCCccccccCCCCCHHhHHHHHH
Q 002961 546 -----------------------------ILDPALVRPGRFDRKIFIPKPGLIGRMEILK 576 (862)
Q Consensus 546 -----------------------------~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~ 576 (862)
.+.|+|+. |+|.++.|.+.+.++...|+.
T Consensus 265 f~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f~~L~~~~L~~Il~ 322 (412)
T PRK05342 265 FGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATLEELDEEALVRILT 322 (412)
T ss_pred CccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeecCCCCHHHHHHHHH
Confidence 02455554 999999999999999999987
No 108
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.10 E-value=9.9e-10 Score=133.04 Aligned_cols=178 Identities=26% Similarity=0.344 Sum_probs=118.1
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHH-----hcCCceeEhHHHHHhhhh
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAK-----DNAPSVVFIDELDAVGRE 503 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~-----~~~p~iL~iDEid~l~~~ 503 (862)
...++|+||||||||||+++|+...+..+..+++... ....++..+..+. .....++||||+|.+...
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~ 124 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA 124 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH
Confidence 3478999999999999999999998887777765421 1112233333321 123568999999988543
Q ss_pred ccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEec--CCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHcc
Q 002961 504 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST--NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK 581 (862)
Q Consensus 504 ~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tT--N~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~ 581 (862)
..+.|+..++ .+.+++|++| |....+++++++ |. ..+.|++++.+++..|++..+..
T Consensus 125 --------------qQdaLL~~lE----~g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~ 183 (725)
T PRK13341 125 --------------QQDALLPWVE----NGTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQD 183 (725)
T ss_pred --------------HHHHHHHHhc----CceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHH
Confidence 3455555554 2456777665 444578899998 53 37899999999999999988762
Q ss_pred -------CCC-CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhC--CcccCHHHHHHHHHH
Q 002961 582 -------KPM-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG--RTEITTDDLLQAAQI 635 (862)
Q Consensus 582 -------~~~-~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~--~~~It~edl~~Al~~ 635 (862)
..+ .++..+..|+....| +.+.+.++++.+...+...+ ...||.+++.+++..
T Consensus 184 ~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~ 246 (725)
T PRK13341 184 KERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQ 246 (725)
T ss_pred HHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHH
Confidence 111 233446677777755 56667777777654332222 223788888887753
No 109
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.10 E-value=4.6e-10 Score=139.50 Aligned_cols=178 Identities=23% Similarity=0.376 Sum_probs=124.4
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc----------cCceeeeecccch--hhhcccchhhHHHHHHHHHhc-CCceeE
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFV--EIYVGVGASRVRSLYQEAKDN-APSVVF 493 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l----------~~~~~~i~~~~~~--~~~~gq~~~~l~~~f~~a~~~-~p~iL~ 493 (862)
+...+++|+||||+|||++++.|+..+ +..++.++++.+. ..|.|.....+..++..+... .+.|||
T Consensus 192 ~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILf 271 (852)
T TIGR03346 192 RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILF 271 (852)
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEE
Confidence 344568999999999999999999875 4566677766654 347777777888899888653 578999
Q ss_pred hHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCC-----CCCccccCCCCccccccCCCCCH
Q 002961 494 IDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD-----ILDPALVRPGRFDRKIFIPKPGL 568 (862)
Q Consensus 494 iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~-----~Ld~aLlrpgRfd~~I~~~~P~~ 568 (862)
|||++.+.+... +.|.. ...+.|. ....++.+.+|++|+..+ .+|+++.| ||. .|.++.|+.
T Consensus 272 IDEih~l~~~g~----~~~~~--d~~~~Lk----~~l~~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~ 338 (852)
T TIGR03346 272 IDELHTLVGAGK----AEGAM--DAGNMLK----PALARGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTV 338 (852)
T ss_pred eccHHHhhcCCC----Ccchh--HHHHHhc----hhhhcCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCH
Confidence 999999975321 11111 1223332 223467799999998763 47999999 997 689999999
Q ss_pred HhHHHHHHHHHccCCCC-----CcccHHHHHhhcCCC-----CHHHHHHHHHHHHHHHH
Q 002961 569 IGRMEILKVHARKKPMA-----DDVDYLAVASMTDGM-----VGAELANIVEVAAINMM 617 (862)
Q Consensus 569 ~~R~~Il~~~l~~~~~~-----~~~dl~~lA~~t~G~-----s~adI~~lv~~A~~~A~ 617 (862)
+++..|++......... .+..+..++..+.+| -|.....++++|+..+.
T Consensus 339 ~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~ 397 (852)
T TIGR03346 339 EDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIR 397 (852)
T ss_pred HHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHH
Confidence 99999999776554322 233445555544443 45666688888876544
No 110
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.10 E-value=9.1e-10 Score=122.49 Aligned_cols=133 Identities=21% Similarity=0.203 Sum_probs=93.9
Q ss_pred CceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc-----------CCCcEEEEEecCCCC-CCCccccCCCC
Q 002961 489 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-ILDPALVRPGR 556 (862)
Q Consensus 489 p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~-----------~~~~vlvI~tTN~~~-~Ld~aLlrpgR 556 (862)
.+++++||++.+... .++.|+..|+.-. -...+++|+++|..+ .++++|+. |
T Consensus 132 ~GvL~lDEi~~L~~~--------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--R 195 (337)
T TIGR02030 132 RGILYIDEVNLLEDH--------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--R 195 (337)
T ss_pred CCEEEecChHhCCHH--------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--h
Confidence 468999999987544 6667777765321 124688889888755 68999999 9
Q ss_pred ccccccCCCCCH-HhHHHHHHHHHccC-------------------------------CCCCcc--cHHHHHhhcCCCCH
Q 002961 557 FDRKIFIPKPGL-IGRMEILKVHARKK-------------------------------PMADDV--DYLAVASMTDGMVG 602 (862)
Q Consensus 557 fd~~I~~~~P~~-~~R~~Il~~~l~~~-------------------------------~~~~~~--dl~~lA~~t~G~s~ 602 (862)
|..++.+++|+. ++|.+|++...... .+++.+ .+..++..+..-++
T Consensus 196 f~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~ 275 (337)
T TIGR02030 196 FGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGL 275 (337)
T ss_pred cceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCC
Confidence 999999999976 88889988743210 011100 12233444443355
Q ss_pred HHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHh
Q 002961 603 AELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 637 (862)
Q Consensus 603 adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 637 (862)
+.-..+++.|...|..+|+..|+.+|+..++....
T Consensus 276 Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL 310 (337)
T TIGR02030 276 RGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLAL 310 (337)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 55558899999999999999999999999987443
No 111
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.09 E-value=1e-08 Score=122.96 Aligned_cols=192 Identities=26% Similarity=0.309 Sum_probs=115.9
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc----------cCceeeeecccchh-------hhcccchhhH----HHHHH---
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFVE-------IYVGVGASRV----RSLYQ--- 482 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l----------~~~~~~i~~~~~~~-------~~~gq~~~~l----~~~f~--- 482 (862)
..+..++|+||||||||||++++.+.. ..+++.+++..+.. ..++...... ...+.
T Consensus 173 ~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~g 252 (615)
T TIGR02903 173 PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETG 252 (615)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcC
Confidence 345679999999999999999998755 24567777654310 1122111100 00010
Q ss_pred -------HHHhcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccc--------------------------
Q 002961 483 -------EAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF-------------------------- 529 (862)
Q Consensus 483 -------~a~~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~-------------------------- 529 (862)
.+.....++|||||++.+... ....|+..|+.-
T Consensus 253 l~~~~~g~v~~asgGvL~LDEi~~Ld~~--------------~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~ 318 (615)
T TIGR02903 253 VPEPKTGLVTDAHGGVLFIDEIGELDPL--------------LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEE 318 (615)
T ss_pred CCchhcCchhhcCCCeEEEeccccCCHH--------------HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhccc
Confidence 011223569999999877443 334444444321
Q ss_pred cCCCcEEEEEe-cCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHH
Q 002961 530 EGRGNVITIAS-TNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELAN 607 (862)
Q Consensus 530 ~~~~~vlvI~t-TN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~ 607 (862)
.....+++|++ |+.++.++++|++ ||. .+.|++++.++...|++..+....+. .+..+..++..+. .++...+
T Consensus 319 ~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln 393 (615)
T TIGR02903 319 GAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVN 393 (615)
T ss_pred CccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHH
Confidence 01224566654 5678889999988 887 67889999999999999988765332 2333444555442 4455555
Q ss_pred HHHHHHHHHHHh--------CCcccCHHHHHHHHHHHh
Q 002961 608 IVEVAAINMMRD--------GRTEITTDDLLQAAQIEE 637 (862)
Q Consensus 608 lv~~A~~~A~~~--------~~~~It~edl~~Al~~~~ 637 (862)
++..+...+..+ +...|+.+|+.+++....
T Consensus 394 ~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 394 ILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 555554443211 233799999999987543
No 112
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=1.2e-09 Score=128.21 Aligned_cols=183 Identities=17% Similarity=0.221 Sum_probs=120.1
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceee--eeccc-----------chhh-hc----ccchhhHHHHHHHHHh---
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISASQ-----------FVEI-YV----GVGASRVRSLYQEAKD--- 486 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~--i~~~~-----------~~~~-~~----gq~~~~l~~~f~~a~~--- 486 (862)
.+..++|+||+|+||||+++++|..+...... -.|+. +... .+ ..+...++.+.+.+..
T Consensus 37 l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~ 116 (546)
T PRK14957 37 VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPS 116 (546)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhh
Confidence 44568999999999999999999976531110 00100 0000 00 0112234555555442
Q ss_pred -cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCC
Q 002961 487 -NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPK 565 (862)
Q Consensus 487 -~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~ 565 (862)
....|++|||+|.+... ..+.||..|+.. ...+++|++|+.+..+.+.+++ |. ..+.|.+
T Consensus 117 ~g~~kViIIDEa~~ls~~--------------a~naLLK~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~ 177 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ--------------SFNALLKTLEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKH 177 (546)
T ss_pred cCCcEEEEEechhhccHH--------------HHHHHHHHHhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCC
Confidence 23469999999988543 678899888854 3466777777778888888988 54 4899999
Q ss_pred CCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 566 PGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 566 P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
++.++....+...+....+. ++..+..++..+. -+.+++.+++..+... .+ ..|+.+++.+++.
T Consensus 178 Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~-GdlR~alnlLek~i~~---~~-~~It~~~V~~~l~ 242 (546)
T PRK14957 178 ISQADIKDQLKIILAKENINSDEQSLEYIAYHAK-GSLRDALSLLDQAISF---CG-GELKQAQIKQMLG 242 (546)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHHHh---cc-CCCCHHHHHHHHc
Confidence 99999888888777654433 3444566777775 4667777777766532 22 4688888877543
No 113
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=1.6e-09 Score=126.78 Aligned_cols=176 Identities=22% Similarity=0.271 Sum_probs=120.3
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCc-----------------------eeeeecccchhhhcccchhhHHHHHHHH
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVN-----------------------FFSISASQFVEIYVGVGASRVRSLYQEA 484 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~-----------------------~~~i~~~~~~~~~~gq~~~~l~~~f~~a 484 (862)
.+..++|+||+|+||||+++++|..+... +..++.. .......++.+.+.+
T Consensus 35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~------~~~~vd~iR~l~~~~ 108 (504)
T PRK14963 35 LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAA------SNNSVEDVRDLREKV 108 (504)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEeccc------ccCCHHHHHHHHHHH
Confidence 45567999999999999999999987431 1111111 011223345554444
Q ss_pred Hh----cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCcccc
Q 002961 485 KD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRK 560 (862)
Q Consensus 485 ~~----~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~ 560 (862)
.. ..+.+++|||+|.+... .++.|+..|+.. ...+++|.+||.+..+.+.+.+ |+. +
T Consensus 109 ~~~p~~~~~kVVIIDEad~ls~~--------------a~naLLk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~ 169 (504)
T PRK14963 109 LLAPLRGGRKVYILDEAHMMSKS--------------AFNALLKTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-H 169 (504)
T ss_pred hhccccCCCeEEEEECccccCHH--------------HHHHHHHHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-E
Confidence 32 23569999999876432 678888888754 3466777788888999999998 554 7
Q ss_pred ccCCCCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 561 IFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 561 I~~~~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
+.|.+|+.++....++..+....+. ++..+..++..+.| +.+++.++++.+.. . ...||.+++..++.
T Consensus 170 ~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~aln~Lekl~~---~--~~~It~~~V~~~l~ 238 (504)
T PRK14963 170 FRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMRDAESLLERLLA---L--GTPVTRKQVEEALG 238 (504)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHh---c--CCCCCHHHHHHHHC
Confidence 9999999999999999888665443 33456677777765 55556677766532 1 23699988887754
No 114
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.06 E-value=1.5e-09 Score=121.72 Aligned_cols=183 Identities=21% Similarity=0.289 Sum_probs=121.1
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceee--eeccc------c-----hh-hhc----ccchhhHHHHHHHHHhc--
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISASQ------F-----VE-IYV----GVGASRVRSLYQEAKDN-- 487 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~--i~~~~------~-----~~-~~~----gq~~~~l~~~f~~a~~~-- 487 (862)
.+..++|+||+|+|||+++++++..+...... -.|+. + .. ..+ ......++.+++.+...
T Consensus 35 ~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~ 114 (355)
T TIGR02397 35 IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPS 114 (355)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcc
Confidence 45678999999999999999999876432100 01110 0 00 000 11223356666665432
Q ss_pred --CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCC
Q 002961 488 --APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPK 565 (862)
Q Consensus 488 --~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~ 565 (862)
...++++||+|.+... .++.|+..++.. ...+++|.+||.++.+.+++.+ |+. .+.|++
T Consensus 115 ~~~~~vviidea~~l~~~--------------~~~~Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~ 175 (355)
T TIGR02397 115 SGKYKVYIIDEVHMLSKS--------------AFNALLKTLEEP--PEHVVFILATTEPHKIPATILS--RCQ-RFDFKR 175 (355)
T ss_pred cCCceEEEEeChhhcCHH--------------HHHHHHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--hee-EEEcCC
Confidence 2358999999887532 567788888753 3466777778888888889988 664 789999
Q ss_pred CCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 566 PGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 566 P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
|+.++...++..++...... ++..+..++..+.| +++.+.+.++.+... . ...||.+++.+++.
T Consensus 176 ~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~~a~~~lekl~~~---~-~~~it~~~v~~~~~ 240 (355)
T TIGR02397 176 IPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLRDALSLLDQLISF---G-NGNITYEDVNELLG 240 (355)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChHHHHHHHHHHHhh---c-CCCCCHHHHHHHhC
Confidence 99999999999888765433 33445566777655 666666776665543 2 23599999988763
No 115
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.06 E-value=4e-10 Score=118.45 Aligned_cols=169 Identities=21% Similarity=0.314 Sum_probs=108.0
Q ss_pred eEEEECCCCCchhHHHHHHHhhc-----cCceeeeecccchhhhcccch-hhHHHHHHHHHhcCCceeEhHHHHHhhhhc
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGA-SRVRSLYQEAKDNAPSVVFIDELDAVGRER 504 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l-----~~~~~~i~~~~~~~~~~gq~~-~~l~~~f~~a~~~~p~iL~iDEid~l~~~~ 504 (862)
.++|+||+|+|||+|++++++++ +..+.+++..++...+..... ..+..+.+..+ ..++++||+++.+.+..
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~~ 113 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGKQ 113 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCch
Confidence 48999999999999999999865 456778887776655432211 11233333332 45689999999885431
Q ss_pred cCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCC---CCccccCCCCcc--ccccCCCCCHHhHHHHHHHHH
Q 002961 505 GLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 505 ~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~---Ld~aLlrpgRfd--~~I~~~~P~~~~R~~Il~~~l 579 (862)
. +...|...++.+...++.+|+++...|.. +++.|.+ ||. .++.+.+|+.++|..|++..+
T Consensus 114 ---------~---~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a 179 (219)
T PF00308_consen 114 ---------R---TQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKA 179 (219)
T ss_dssp ---------H---HHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHH
T ss_pred ---------H---HHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHH
Confidence 1 44556666666666667777777666665 4567777 654 478899999999999999998
Q ss_pred ccCCCCCccc-HHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 002961 580 RKKPMADDVD-YLAVASMTDGMVGAELANIVEVAAINM 616 (862)
Q Consensus 580 ~~~~~~~~~d-l~~lA~~t~G~s~adI~~lv~~A~~~A 616 (862)
....+.-+.+ +..++.... -+.++|..+++.....+
T Consensus 180 ~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 180 KERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAYA 216 (219)
T ss_dssp HHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHHh
Confidence 7776554433 444566654 47788888888765443
No 116
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.06 E-value=5.8e-10 Score=138.21 Aligned_cols=180 Identities=24% Similarity=0.379 Sum_probs=125.2
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhc----------cCceeeeecccch--hhhcccchhhHHHHHHHHHhcCCce
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFV--EIYVGVGASRVRSLYQEAKDNAPSV 491 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l----------~~~~~~i~~~~~~--~~~~gq~~~~l~~~f~~a~~~~p~i 491 (862)
+.-+...+++|+||||||||++++.||..+ +..++.++++.+. ..|.|+....++.+++.+....+.|
T Consensus 195 L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~I 274 (821)
T CHL00095 195 LGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNII 274 (821)
T ss_pred HcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeE
Confidence 334566789999999999999999999875 3567788877665 3477887888999999998778889
Q ss_pred eEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCC-----CCCccccCCCCccccccCCCC
Q 002961 492 VFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD-----ILDPALVRPGRFDRKIFIPKP 566 (862)
Q Consensus 492 L~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~-----~Ld~aLlrpgRfd~~I~~~~P 566 (862)
|||||++.+.+.... .|+.. ..+.|. ....++.+.+|++|+..+ ..|+++.+ ||. .|.++.|
T Consensus 275 LfiDEih~l~~~g~~---~g~~~---~a~lLk----p~l~rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep 341 (821)
T CHL00095 275 LVIDEVHTLIGAGAA---EGAID---AANILK----PALARGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEP 341 (821)
T ss_pred EEEecHHHHhcCCCC---CCccc---HHHHhH----HHHhCCCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCC
Confidence 999999999764321 11111 222222 222357789999998754 47899999 997 5789999
Q ss_pred CHHhHHHHHHHHHcc----CCC-CCcccHHHHHhhcCCC-----CHHHHHHHHHHHHHHH
Q 002961 567 GLIGRMEILKVHARK----KPM-ADDVDYLAVASMTDGM-----VGAELANIVEVAAINM 616 (862)
Q Consensus 567 ~~~~R~~Il~~~l~~----~~~-~~~~dl~~lA~~t~G~-----s~adI~~lv~~A~~~A 616 (862)
+.++...|++..... ..+ ..+..+..++..+.+| .|.....++.+|+...
T Consensus 342 ~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~ 401 (821)
T CHL00095 342 SVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRV 401 (821)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHH
Confidence 999998998754321 122 2333455566655554 3455557777776544
No 117
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.06 E-value=2.5e-09 Score=118.97 Aligned_cols=179 Identities=21% Similarity=0.305 Sum_probs=111.1
Q ss_pred eEEEECCCCCchhHHHHHHHhhcc-----Cceeeeecccchhh---hc----------cc-------chhhHHHHHHHHH
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAG-----VNFFSISASQFVEI---YV----------GV-------GASRVRSLYQEAK 485 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~-----~~~~~i~~~~~~~~---~~----------gq-------~~~~l~~~f~~a~ 485 (862)
.++|+||+||||||++++++..+. .++.++++.++... +. +. ....++.+.....
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYA 117 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 689999999999999999998773 24566666553211 00 00 0111233332322
Q ss_pred h-----cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCcccc
Q 002961 486 D-----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRK 560 (862)
Q Consensus 486 ~-----~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~ 560 (862)
. ..+.++++||++.+... ..+.|...++.... ...+|.+|+.+..+.+.|.+ |+ ..
T Consensus 118 ~~~~~~~~~~vlilDe~~~l~~~--------------~~~~L~~~le~~~~--~~~~Il~~~~~~~~~~~L~s--r~-~~ 178 (337)
T PRK12402 118 SYRPLSADYKTILLDNAEALRED--------------AQQALRRIMEQYSR--TCRFIIATRQPSKLIPPIRS--RC-LP 178 (337)
T ss_pred hcCCCCCCCcEEEEeCcccCCHH--------------HHHHHHHHHHhccC--CCeEEEEeCChhhCchhhcC--Cc-eE
Confidence 2 22458999999877432 33445555655433 23455555556677778887 54 37
Q ss_pred ccCCCCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 561 IFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 561 I~~~~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
+.|++|+.++...+++..+....+. ++..+..++..+.| +.+.+.+.+. ..+ .+...||.+++.+++.
T Consensus 179 v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g-dlr~l~~~l~---~~~--~~~~~It~~~v~~~~~ 247 (337)
T PRK12402 179 LFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG-DLRKAILTLQ---TAA--LAAGEITMEAAYEALG 247 (337)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH---HHH--HcCCCCCHHHHHHHhC
Confidence 8999999999999999887665433 44556777777744 4444444333 222 2233799999988764
No 118
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.06 E-value=1.3e-09 Score=133.40 Aligned_cols=185 Identities=17% Similarity=0.157 Sum_probs=122.7
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceee--eecccc-------------hhh-hcc----cchhhHHHHHHHHH-
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISASQF-------------VEI-YVG----VGASRVRSLYQEAK- 485 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~--i~~~~~-------------~~~-~~g----q~~~~l~~~f~~a~- 485 (862)
+.++.+||+||+||||||++++|+..+.+..+. -.|+.. ... .+. .+...++.+.+.+.
T Consensus 35 ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~ 114 (824)
T PRK07764 35 RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFF 114 (824)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHh
Confidence 345568999999999999999999988642110 001110 000 011 11233444444332
Q ss_pred ---hcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCcccccc
Q 002961 486 ---DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIF 562 (862)
Q Consensus 486 ---~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~ 562 (862)
.....|+||||+|.+... ..|.||..|+... ..++||++|+.++.|.+.|++ |. .+|.
T Consensus 115 ~p~~~~~KV~IIDEad~lt~~--------------a~NaLLK~LEEpP--~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~ 175 (824)
T PRK07764 115 APAESRYKIFIIDEAHMVTPQ--------------GFNALLKIVEEPP--EHLKFIFATTEPDKVIGTIRS--RT-HHYP 175 (824)
T ss_pred chhcCCceEEEEechhhcCHH--------------HHHHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--he-eEEE
Confidence 234569999999999654 6788999998654 467777777888889999998 44 3889
Q ss_pred CCCCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 563 IPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 563 ~~~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
|..++.++...+|...+....+. ++..+..++..+.| +.+++.++++..+. ..+...||.+++...+.
T Consensus 176 F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~Al~eLEKLia---~~~~~~IT~e~V~allg 244 (824)
T PRK07764 176 FRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRDSLSVLDQLLA---GAGPEGVTYERAVALLG 244 (824)
T ss_pred eeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHh---hcCCCCCCHHHHHHHhc
Confidence 99999999999988887655443 33345566666655 67777777776542 23445688888776654
No 119
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.05 E-value=1.1e-09 Score=134.25 Aligned_cols=134 Identities=26% Similarity=0.372 Sum_probs=102.7
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceeeeecccchhh-----hcccchh-----hHHHHHHHHHhcCCceeEhHHHHHh
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-----YVGVGAS-----RVRSLYQEAKDNAPSVVFIDELDAV 500 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~-----~~gq~~~-----~l~~~f~~a~~~~p~iL~iDEid~l 500 (862)
.++|+||+|||||+|+++||..++.+++.++++++... ++|...+ ....+.+.++..+.+|++|||++.+
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 48999999999999999999999999999998876542 2222111 1234556666777889999999988
Q ss_pred hhhccCcCCCCchhHHHHHHHHHHhhcccc---------CCCcEEEEEecCCCC-------------------------C
Q 002961 501 GRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPD-------------------------I 546 (862)
Q Consensus 501 ~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~---------~~~~vlvI~tTN~~~-------------------------~ 546 (862)
.+. ..+.|+..||... +..++++|+|||... .
T Consensus 566 ~~~--------------~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~ 631 (731)
T TIGR02639 566 HPD--------------IYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKL 631 (731)
T ss_pred CHH--------------HHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhh
Confidence 654 7788888887531 124678999998642 2
Q ss_pred CCccccCCCCccccccCCCCCHHhHHHHHHHHHc
Q 002961 547 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR 580 (862)
Q Consensus 547 Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~ 580 (862)
+.|.|+. |||.+|.|.+.+.++...|++..+.
T Consensus 632 f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 632 FSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred cChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 5677776 9999999999999999999998875
No 120
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=2.7e-09 Score=126.13 Aligned_cols=183 Identities=19% Similarity=0.227 Sum_probs=120.0
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceee--eecccc-----------hhh-hc----ccchhhHHHHHHHHHh---
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISASQF-----------VEI-YV----GVGASRVRSLYQEAKD--- 486 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~--i~~~~~-----------~~~-~~----gq~~~~l~~~f~~a~~--- 486 (862)
.+..++|+||+|+||||++++||..+.+.... ..|+.. ... .+ ......++.+.+.+..
T Consensus 37 i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~ 116 (624)
T PRK14959 37 VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPM 116 (624)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhh
Confidence 35678999999999999999999987542100 001110 000 01 1112233444333322
Q ss_pred -cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCC
Q 002961 487 -NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPK 565 (862)
Q Consensus 487 -~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~ 565 (862)
....|++|||+|.+... .++.|+..|+.. ...+++|++||.+..+.+.+++ |+. +|.|++
T Consensus 117 ~g~~kVIIIDEad~Lt~~--------------a~naLLk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~p 177 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTRE--------------AFNALLKTLEEP--PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTR 177 (624)
T ss_pred cCCceEEEEEChHhCCHH--------------HHHHHHHHhhcc--CCCEEEEEecCChhhhhHHHHh--hhh-ccccCC
Confidence 23468999999998543 678888888864 3467888888888888889988 654 789999
Q ss_pred CCHHhHHHHHHHHHccCCC-CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 566 PGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 566 P~~~~R~~Il~~~l~~~~~-~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
++.++...+|...+....+ .++..+..++..+.| +.+++.+++..+. ..+...||.+++..++.
T Consensus 178 Ls~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-dlR~Al~lLeqll----~~g~~~It~d~V~~~lg 242 (624)
T PRK14959 178 LSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-SVRDSMSLLGQVL----ALGESRLTIDGARGVLG 242 (624)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH----HhcCCCcCHHHHHHHhC
Confidence 9999999998887765543 344456677777765 4444556665442 23555799988877653
No 121
>PRK06620 hypothetical protein; Validated
Probab=99.04 E-value=1.4e-09 Score=113.88 Aligned_cols=164 Identities=15% Similarity=0.141 Sum_probs=106.5
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccCcCC
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKG 509 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~ 509 (862)
..++|+||+|+|||+|+++++...+..+ ++... .. ...+ ...++++||||+.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~--~~~~~-----~~------~~~~-----~~~d~lliDdi~~~~~------- 99 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYI--IKDIF-----FN------EEIL-----EKYNAFIIEDIENWQE------- 99 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEE--cchhh-----hc------hhHH-----hcCCEEEEeccccchH-------
Confidence 5689999999999999999988765321 11110 00 1111 1236899999984411
Q ss_pred CCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCC--CCccccCCCCcc--ccccCCCCCHHhHHHHHHHHHccCCCC
Q 002961 510 SGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI--LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHARKKPMA 585 (862)
Q Consensus 510 Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~--Ld~aLlrpgRfd--~~I~~~~P~~~~R~~Il~~~l~~~~~~ 585 (862)
..|...++.+...+..++|+++..|.. + +.|++ |+. .++.+.+|+.+++..+++..+....+.
T Consensus 100 ----------~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~ 166 (214)
T PRK06620 100 ----------PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVT 166 (214)
T ss_pred ----------HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 122233333334556788877755554 5 78888 665 468999999999999998887654433
Q ss_pred -CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 002961 586 -DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 633 (862)
Q Consensus 586 -~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al 633 (862)
++..+..|+....| +.+.+.++++.....+...+ ..||...+.+++
T Consensus 167 l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 167 ISRQIIDFLLVNLPR-EYSKIIEILENINYFALISK-RKITISLVKEVL 213 (214)
T ss_pred CCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHh
Confidence 33446667777765 66667788877543344334 469998888765
No 122
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.6e-09 Score=119.13 Aligned_cols=193 Identities=25% Similarity=0.352 Sum_probs=133.7
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCc-----eeeeecccchhhh---------c------ccc-hhhHHHHHHHHH
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN-----FFSISASQFVEIY---------V------GVG-ASRVRSLYQEAK 485 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~-----~~~i~~~~~~~~~---------~------gq~-~~~l~~~f~~a~ 485 (862)
..|.+++|+|++|||||++++-++.++... +.+++|-...+.| + |.. ......+++...
T Consensus 40 ~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~ 119 (366)
T COG1474 40 ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLS 119 (366)
T ss_pred CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHH
Confidence 445569999999999999999999987433 7888887654431 1 111 112244555544
Q ss_pred h-cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCC---CCCCccccCCCCccccc
Q 002961 486 D-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP---DILDPALVRPGRFDRKI 561 (862)
Q Consensus 486 ~-~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~---~~Ld~aLlrpgRfd~~I 561 (862)
. ...-|+++||+|.+....+ ..+..|+...... ..++.+|+.+|.. +.+|+.+.+.-. ...|
T Consensus 120 ~~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s~l~-~~~I 185 (366)
T COG1474 120 KKGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKSSLG-PSEI 185 (366)
T ss_pred hcCCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhhccC-ccee
Confidence 4 3455899999999976532 2566666555444 5678899999876 468888877322 2358
Q ss_pred cCCCCCHHhHHHHHHHHHccC----CCCCcc-c-HHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 562 FIPKPGLIGRMEILKVHARKK----PMADDV-D-YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 562 ~~~~P~~~~R~~Il~~~l~~~----~~~~~~-d-l~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
.||+++.++...|+....... .+++++ + ...++....| +.+-...+++.|+..|.+++...++.+++..|..
T Consensus 186 ~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~ 263 (366)
T COG1474 186 VFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQE 263 (366)
T ss_pred eeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Confidence 999999999999999887643 222221 1 2223444445 4555669999999999999999999999999954
No 123
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=2.5e-09 Score=124.63 Aligned_cols=183 Identities=21% Similarity=0.294 Sum_probs=121.2
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCc-------eeee-ecc-----cchhhh-c----ccchhhHHHHHHHHHhc--
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVN-------FFSI-SAS-----QFVEIY-V----GVGASRVRSLYQEAKDN-- 487 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~-------~~~i-~~~-----~~~~~~-~----gq~~~~l~~~f~~a~~~-- 487 (862)
.+..++|+||+|+||||+++++|..+.+. .+.+ +|. .+...+ + ..+...++.+.+.+...
T Consensus 37 i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~ 116 (486)
T PRK14953 37 VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPI 116 (486)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcc
Confidence 44567899999999999999999987531 1111 110 000110 0 11223345555555432
Q ss_pred --CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCC
Q 002961 488 --APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPK 565 (862)
Q Consensus 488 --~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~ 565 (862)
.+.|++|||+|.+... .++.|+..|+.. +..+++|.+|+.++.+++++.+ |+. .+.|++
T Consensus 117 ~~~~KVvIIDEad~Lt~~--------------a~naLLk~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ 177 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKE--------------AFNALLKTLEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSK 177 (486)
T ss_pred cCCeeEEEEEChhhcCHH--------------HHHHHHHHHhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCC
Confidence 3468999999987543 567888888754 3355666666777888889888 554 789999
Q ss_pred CCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 566 PGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 566 P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
|+.++...++...+....+. ++..+..++..+.| +.+++.++++.+... +...||.+++.+++.
T Consensus 178 ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~al~~Ldkl~~~----~~~~It~~~V~~~lg 242 (486)
T PRK14953 178 PTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDAASLLDQASTY----GEGKVTIKVVEEFLG 242 (486)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHhC
Confidence 99999999999888765543 33445667777665 566677777766532 344699999988764
No 124
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.04 E-value=6.4e-10 Score=135.30 Aligned_cols=135 Identities=23% Similarity=0.391 Sum_probs=100.8
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhh-----hcccchhhH-----HHHHHHHHhcCCceeEhHHHHH
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-----YVGVGASRV-----RSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~-----~~gq~~~~l-----~~~f~~a~~~~p~iL~iDEid~ 499 (862)
..++|+||+|||||+++++||..++.+++.++++++... ++|.....+ ..+.+.++..+.+|++|||+|.
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEiek 568 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEK 568 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhh
Confidence 458999999999999999999999999999998876431 333211111 2344555666778999999999
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhccc--c-------CCCcEEEEEecCCC-------------------------C
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGF--E-------GRGNVITIASTNRP-------------------------D 545 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~--~-------~~~~vlvI~tTN~~-------------------------~ 545 (862)
+.+. +++.|+..||.- . ...++++|+|||.- .
T Consensus 569 a~~~--------------v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 634 (758)
T PRK11034 569 AHPD--------------VFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKK 634 (758)
T ss_pred hhHH--------------HHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHH
Confidence 8754 778888888742 1 12468899999832 1
Q ss_pred CCCccccCCCCccccccCCCCCHHhHHHHHHHHHc
Q 002961 546 ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR 580 (862)
Q Consensus 546 ~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~ 580 (862)
.+.|+|+. |+|.+|.|++.+.++...|+...+.
T Consensus 635 ~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 635 IFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred hcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 25677777 9999999999999999999877664
No 125
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.04 E-value=2.9e-09 Score=128.72 Aligned_cols=134 Identities=22% Similarity=0.184 Sum_probs=84.9
Q ss_pred ccccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeeccc-chhhhcccch-hhH--
Q 002961 406 PQYLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ-FVEIYVGVGA-SRV-- 477 (862)
Q Consensus 406 ~~l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~-~~~~~~gq~~-~~l-- 477 (862)
.++.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|...+..|.+.... ....|+.|.. ..+
T Consensus 311 ~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~ 390 (638)
T PRK10636 311 PLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRA 390 (638)
T ss_pred ceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCc
Confidence 347788888888652 2 3778888899999999999999999999999888778776542 1223555532 111
Q ss_pred -HHHHHHHHhcCCceeEhHHHHHhhhhccCcC---------CCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCC
Q 002961 478 -RSLYQEAKDNAPSVVFIDELDAVGRERGLIK---------GSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD 545 (862)
Q Consensus 478 -~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~---------~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~ 545 (862)
..+++.+....+. ..-..++.++...++.. =|||++.+..++.++ ..+..-+++..+||+.|
T Consensus 391 ~~~~~~~~~~~~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l-----~~~p~lLlLDEPt~~LD 462 (638)
T PRK10636 391 DESPLQHLARLAPQ-ELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIV-----WQRPNLLLLDEPTNHLD 462 (638)
T ss_pred cchHHHHHHHhCch-hhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHH-----hcCCCEEEEcCCCCCCC
Confidence 1233333222222 11233455554444422 199999999999887 33344455557777654
No 126
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.04 E-value=2e-09 Score=122.27 Aligned_cols=185 Identities=25% Similarity=0.321 Sum_probs=116.0
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchh-hhcccchh-hHHHHHHH----HHhcCCceeEhHHHHHhhh
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE-IYVGVGAS-RVRSLYQE----AKDNAPSVVFIDELDAVGR 502 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~-~~~gq~~~-~l~~~f~~----a~~~~p~iL~iDEid~l~~ 502 (862)
+.+++|+||+|+|||+++++||..++.++..+++..+.. .|+|.... .+..++.. +....+++++|||+|.+..
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 357999999999999999999999999998888776542 37776432 23333321 2234578999999999876
Q ss_pred hccCcC---CCCchhHHHHHHHHHHhhcccc-----------CCCcEEEEEecCCCC-----------------------
Q 002961 503 ERGLIK---GSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD----------------------- 545 (862)
Q Consensus 503 ~~~~~~---~Sgge~~r~~l~~LL~~Ld~~~-----------~~~~vlvI~tTN~~~----------------------- 545 (862)
.....+ +-.|+ .+++.||..|++.. +..+.++|.|+|-..
T Consensus 196 ~~~~~s~~~dvsg~---~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~g 272 (413)
T TIGR00382 196 KSENPSITRDVSGE---GVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIG 272 (413)
T ss_pred hhccccccccccch---hHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhcccc
Confidence 432111 11122 25666777776532 123467777777610
Q ss_pred ---------------------------CCCccccCCCCccccccCCCCCHHhHHHHHHHH----Hcc-------CCCC--
Q 002961 546 ---------------------------ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH----ARK-------KPMA-- 585 (862)
Q Consensus 546 ---------------------------~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~----l~~-------~~~~-- 585 (862)
.+.|+|+. |+|.++.|.+.+.++..+|+... ++. ..+.
T Consensus 273 f~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~ 350 (413)
T TIGR00382 273 FGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELD 350 (413)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 03355655 99999999999999999998753 211 1111
Q ss_pred -CcccHHHHHhh--cCCCCHHHHHHHHHHHHHHHHH
Q 002961 586 -DDVDYLAVASM--TDGMVGAELANIVEVAAINMMR 618 (862)
Q Consensus 586 -~~~dl~~lA~~--t~G~s~adI~~lv~~A~~~A~~ 618 (862)
++..+..++.. ...+-.+-|..+++......+.
T Consensus 351 ~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~ 386 (413)
T TIGR00382 351 FEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMF 386 (413)
T ss_pred ECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHh
Confidence 12234455543 3345566777777766554444
No 127
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=2.4e-09 Score=125.88 Aligned_cols=183 Identities=21% Similarity=0.254 Sum_probs=120.6
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCcee-e-eecccch-----------hh-hc----ccchhhHHHHHHHHHhc-
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF-S-ISASQFV-----------EI-YV----GVGASRVRSLYQEAKDN- 487 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~-~-i~~~~~~-----------~~-~~----gq~~~~l~~~f~~a~~~- 487 (862)
+.++.++|+||+|+||||+|+++|..+.+... . -.|+... .. .+ ..+...++.+.+.+...
T Consensus 36 rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P 115 (605)
T PRK05896 36 KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLP 115 (605)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhch
Confidence 44567999999999999999999997642100 0 0111100 00 00 11223456666555432
Q ss_pred ---CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCC
Q 002961 488 ---APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIP 564 (862)
Q Consensus 488 ---~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~ 564 (862)
...|++|||+|.+... ..+.|+..|+.. +..+++|.+|+.+..+.+++++ |+. ++.|+
T Consensus 116 ~~~~~KVIIIDEad~Lt~~--------------A~NaLLKtLEEP--p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~ 176 (605)
T PRK05896 116 TTFKYKVYIIDEAHMLSTS--------------AWNALLKTLEEP--PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFK 176 (605)
T ss_pred hhCCcEEEEEechHhCCHH--------------HHHHHHHHHHhC--CCcEEEEEECCChHhhhHHHHh--hhh-hcccC
Confidence 2358999999987532 567888888854 3467788788888999999998 654 89999
Q ss_pred CCCHHhHHHHHHHHHccCCC-CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 002961 565 KPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 633 (862)
Q Consensus 565 ~P~~~~R~~Il~~~l~~~~~-~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al 633 (862)
+|+..+....+...+..... .++..+..++..+.| +.+++.++++.... ..+. .|+.+++..++
T Consensus 177 ~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR~AlnlLekL~~---y~~~-~It~e~V~ell 241 (605)
T PRK05896 177 KLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLRDGLSILDQLST---FKNS-EIDIEDINKTF 241 (605)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHh---hcCC-CCCHHHHHHHh
Confidence 99999999888887765443 233446677777765 56666677776432 2333 38888887754
No 128
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.02 E-value=3.5e-09 Score=126.82 Aligned_cols=184 Identities=21% Similarity=0.298 Sum_probs=124.4
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceee---eecccch-------hhh-cc----cchhhHHHHHHHHHhc----
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS---ISASQFV-------EIY-VG----VGASRVRSLYQEAKDN---- 487 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~---i~~~~~~-------~~~-~g----q~~~~l~~~f~~a~~~---- 487 (862)
+.++.++|+||+|+|||++|+++|..+.+.... -.|+... ..+ .+ .+...++.+.+.+...
T Consensus 38 rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g 117 (725)
T PRK07133 38 KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQS 117 (725)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcC
Confidence 345678999999999999999999987543211 0111110 001 11 1233466777666543
Q ss_pred CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCC
Q 002961 488 APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPG 567 (862)
Q Consensus 488 ~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~ 567 (862)
...|++|||++.+... .++.||..|+.. +..+++|++|+.++.|++++++ |+. ++.|.+++
T Consensus 118 ~~KV~IIDEa~~LT~~--------------A~NALLKtLEEP--P~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~ 178 (725)
T PRK07133 118 KYKIYIIDEVHMLSKS--------------AFNALLKTLEEP--PKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRIS 178 (725)
T ss_pred CCEEEEEEChhhCCHH--------------HHHHHHHHhhcC--CCceEEEEEcCChhhhhHHHHh--hce-eEEccCCC
Confidence 3468999999987543 678899888854 4567888888888999999998 664 89999999
Q ss_pred HHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 568 LIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 568 ~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
.++...++...+....+. ++..+..+|..+.| +.+++.+++..+... +...|+.+++.+++.
T Consensus 179 ~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLekl~~y----~~~~It~e~V~ellg 241 (725)
T PRK07133 179 EDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAEQVSIF----GNNKITLKNVEELFG 241 (725)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----ccCCCCHHHHHHHHc
Confidence 999999988877654433 23345667777765 556666777765432 233488888877653
No 129
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=1.7e-09 Score=127.92 Aligned_cols=185 Identities=19% Similarity=0.196 Sum_probs=122.0
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCce-------eee-ecccc-------hhh-hc-c---cchhhHHHHHHHHHh
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNF-------FSI-SASQF-------VEI-YV-G---VGASRVRSLYQEAKD 486 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~-------~~i-~~~~~-------~~~-~~-g---q~~~~l~~~f~~a~~ 486 (862)
+.+..++|+||+|+||||+++++|..+.+.. +.+ +|-.+ ... .+ + .+...++.+.+.+..
T Consensus 33 r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~ 112 (584)
T PRK14952 33 RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFY 112 (584)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHh
Confidence 3455689999999999999999999875421 111 00000 000 01 1 122334545444432
Q ss_pred ----cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCcccccc
Q 002961 487 ----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIF 562 (862)
Q Consensus 487 ----~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~ 562 (862)
....|++|||++.+... .++.||..|+.. ...+++|++|+.+..+.+++++ |. .++.
T Consensus 113 ~P~~~~~KVvIIDEah~Lt~~--------------A~NALLK~LEEp--p~~~~fIL~tte~~kll~TI~S--Rc-~~~~ 173 (584)
T PRK14952 113 APAQSRYRIFIVDEAHMVTTA--------------GFNALLKIVEEP--PEHLIFIFATTEPEKVLPTIRS--RT-HHYP 173 (584)
T ss_pred hhhcCCceEEEEECCCcCCHH--------------HHHHHHHHHhcC--CCCeEEEEEeCChHhhHHHHHH--hc-eEEE
Confidence 23458999999888543 778899999854 4477888888888999999998 53 4899
Q ss_pred CCCCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 563 IPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 563 ~~~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
|..++.++....+...+....+. ++..+..++.... .+.+++.++++..... .+...||.+++...+.
T Consensus 174 F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~-GdlR~aln~Ldql~~~---~~~~~It~~~v~~llg 242 (584)
T PRK14952 174 FRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG-GSPRDTLSVLDQLLAG---AADTHVTYQRALGLLG 242 (584)
T ss_pred eeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHHhc---cCCCCcCHHHHHHHHC
Confidence 99999999988888887665432 3334455655554 5677777888876432 2345688888877654
No 130
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.01 E-value=4.2e-09 Score=125.24 Aligned_cols=184 Identities=20% Similarity=0.204 Sum_probs=126.1
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceeee-------eccc------chhh------hc----ccchhhHHHHHHH
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI-------SASQ------FVEI------YV----GVGASRVRSLYQE 483 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i-------~~~~------~~~~------~~----gq~~~~l~~~f~~ 483 (862)
+.+..++|+||+|+||||+++++|..+.+..... .|+. +... .+ ..+...++.+++.
T Consensus 44 ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~ 123 (598)
T PRK09111 44 RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIES 123 (598)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHH
Confidence 4567899999999999999999999875432111 0110 0000 00 0123345667766
Q ss_pred HHhc----CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccc
Q 002961 484 AKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDR 559 (862)
Q Consensus 484 a~~~----~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~ 559 (862)
+... ...|++|||+|.+... ..+.|+..|+... ..+++|.+|+..+.+.+.+++ |+.
T Consensus 124 ~~~~P~~a~~KVvIIDEad~Ls~~--------------a~naLLKtLEePp--~~~~fIl~tte~~kll~tI~S--Rcq- 184 (598)
T PRK09111 124 VRYRPVSARYKVYIIDEVHMLSTA--------------AFNALLKTLEEPP--PHVKFIFATTEIRKVPVTVLS--RCQ- 184 (598)
T ss_pred HHhchhcCCcEEEEEEChHhCCHH--------------HHHHHHHHHHhCC--CCeEEEEEeCChhhhhHHHHh--hee-
Confidence 6433 2468999999988543 6788998888654 356777777788888889988 553
Q ss_pred cccCCCCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 560 KIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 560 ~I~~~~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
.+.|..++.++...++...+...... ++..+..++..+.| +.+++.++++.+... +...||.+++.+.+.
T Consensus 185 ~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~al~~Ldkli~~----g~g~It~e~V~~llg 255 (598)
T PRK09111 185 RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRDGLSLLDQAIAH----GAGEVTAEAVRDMLG 255 (598)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhh----cCCCcCHHHHHHHhC
Confidence 79999999999999998887655443 33445666777665 677787888766433 344699999988765
No 131
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.01 E-value=2.9e-09 Score=118.25 Aligned_cols=130 Identities=18% Similarity=0.254 Sum_probs=91.8
Q ss_pred CceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc-----------CCCcEEEEEecCCCC-CCCccccCCCC
Q 002961 489 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-ILDPALVRPGR 556 (862)
Q Consensus 489 p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~-----------~~~~vlvI~tTN~~~-~Ld~aLlrpgR 556 (862)
.++|++||++.+... +++.|+..|+.-. ....+++++++|..+ .++++++. |
T Consensus 129 ~GiL~lDEInrl~~~--------------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--R 192 (334)
T PRK13407 129 RGYLYIDEVNLLEDH--------------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--R 192 (334)
T ss_pred CCeEEecChHhCCHH--------------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--h
Confidence 358999999988654 6677777775421 235689999999755 58899999 9
Q ss_pred ccccccCCCCCH-HhHHHHHHHHHccCC----C------C--------------------Cccc---HHHHHhhcC-CCC
Q 002961 557 FDRKIFIPKPGL-IGRMEILKVHARKKP----M------A--------------------DDVD---YLAVASMTD-GMV 601 (862)
Q Consensus 557 fd~~I~~~~P~~-~~R~~Il~~~l~~~~----~------~--------------------~~~d---l~~lA~~t~-G~s 601 (862)
|...+.+++|.. ++|.+|+........ + . ++.. +..++..+. .-.
T Consensus 193 F~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~ 272 (334)
T PRK13407 193 FGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGL 272 (334)
T ss_pred cceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCc
Confidence 999999998866 889999987532110 0 0 0101 122233333 235
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 002961 602 GAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 635 (862)
Q Consensus 602 ~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 635 (862)
.++|. +++.|...|..+|+..|+.+|+..+...
T Consensus 273 Ra~i~-l~~aA~a~A~l~Gr~~V~~~Di~~~~~~ 305 (334)
T PRK13407 273 RGELT-LLRAARALAAFEGAEAVGRSHLRSVATM 305 (334)
T ss_pred hHHHH-HHHHHHHHHHHcCCCeeCHHHHHHHHHH
Confidence 56665 9999999999999999999999888763
No 132
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.01 E-value=3.3e-09 Score=128.34 Aligned_cols=135 Identities=19% Similarity=0.176 Sum_probs=84.6
Q ss_pred ccccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccc-hhhhcccchhhH---
Q 002961 406 PQYLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF-VEIYVGVGASRV--- 477 (862)
Q Consensus 406 ~~l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~-~~~~~gq~~~~l--- 477 (862)
.++.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|.+.+..|.+..+.- ...|+.|....+
T Consensus 318 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~ 397 (635)
T PRK11147 318 IVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPE 397 (635)
T ss_pred ceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCC
Confidence 347788888888652 2 37888888899999999999999999999998887787765432 122555532111
Q ss_pred HHHHHHHHhcCCcee---EhHHHHHhhhhccCcC---------CCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCC
Q 002961 478 RSLYQEAKDNAPSVV---FIDELDAVGRERGLIK---------GSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD 545 (862)
Q Consensus 478 ~~~f~~a~~~~p~iL---~iDEid~l~~~~~~~~---------~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~ 545 (862)
..+++.+....+... ...++..++..+++.. =|||++.+..++.++ ..+..-+++..+||+.|
T Consensus 398 ~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al-----~~~p~lLlLDEPt~~LD 472 (635)
T PRK11147 398 KTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLF-----LKPSNLLILDEPTNDLD 472 (635)
T ss_pred CCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHH-----hcCCCEEEEcCCCCCCC
Confidence 234444432211110 0123444444433321 199999999998887 33444455567777654
No 133
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=4.1e-09 Score=119.22 Aligned_cols=184 Identities=20% Similarity=0.277 Sum_probs=119.1
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccch------hhhcccchhhHHHHHHHHHhc----CCceeEhHH
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV------EIYVGVGASRVRSLYQEAKDN----APSVVFIDE 496 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~------~~~~gq~~~~l~~~f~~a~~~----~p~iL~iDE 496 (862)
..+..++|+||+|+|||+++++++..+...........+. ..........++.+++.+... .+.++++||
T Consensus 37 ~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE 116 (367)
T PRK14970 37 HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDE 116 (367)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeC
Confidence 3456799999999999999999999875422111100000 000111223456666655432 246899999
Q ss_pred HHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHH
Q 002961 497 LDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILK 576 (862)
Q Consensus 497 id~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~ 576 (862)
++.+... .++.++..++.. ....++|.+|+....+.+++.+ |+. .+.|++|+.++...++.
T Consensus 117 ~~~l~~~--------------~~~~ll~~le~~--~~~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~ 177 (367)
T PRK14970 117 VHMLSSA--------------AFNAFLKTLEEP--PAHAIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLA 177 (367)
T ss_pred hhhcCHH--------------HHHHHHHHHhCC--CCceEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHH
Confidence 9877543 467777777653 3345666667777888889988 443 68999999999998888
Q ss_pred HHHccCCC-CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 577 VHARKKPM-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 577 ~~l~~~~~-~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
..+....+ .++..+..++..+.| +.+.+.+.++..... .+.. ||.+++..++.
T Consensus 178 ~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y---~~~~-it~~~v~~~~~ 231 (367)
T PRK14970 178 GIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTF---CGKN-ITRQAVTENLN 231 (367)
T ss_pred HHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHh---cCCC-CCHHHHHHHhC
Confidence 87766554 244556677777654 566666666654432 2333 88888887754
No 134
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.00 E-value=6.6e-09 Score=110.91 Aligned_cols=164 Identities=23% Similarity=0.226 Sum_probs=107.8
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCc----eeee--ecccchhhhcccchhhHHHHHHHHHhc---------C-Cc
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN----FFSI--SASQFVEIYVGVGASRVRSLYQEAKDN---------A-PS 490 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~----~~~i--~~~~~~~~~~gq~~~~l~~~f~~a~~~---------~-p~ 490 (862)
+....++||||||||||+.++++|.++..+ .+.+ +.+.....- .....+ .-|...... + +.
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis--vvr~Ki-k~fakl~~~~~~~~~~~~~~fK 131 (346)
T KOG0989|consen 55 RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS--VVREKI-KNFAKLTVLLKRSDGYPCPPFK 131 (346)
T ss_pred cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc--chhhhh-cCHHHHhhccccccCCCCCcce
Confidence 455679999999999999999999987541 1111 222211111 111111 112222111 1 25
Q ss_pred eeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHh
Q 002961 491 VVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIG 570 (862)
Q Consensus 491 iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~ 570 (862)
|++|||.|.+... +.+.|...|+.+.. .+.+|..||+++.|++.+.+ |.. .+.|++...+.
T Consensus 132 iiIlDEcdsmtsd--------------aq~aLrr~mE~~s~--~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~ 192 (346)
T KOG0989|consen 132 IIILDECDSMTSD--------------AQAALRRTMEDFSR--TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDED 192 (346)
T ss_pred EEEEechhhhhHH--------------HHHHHHHHHhcccc--ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHH
Confidence 8999999999765 77889999998654 57888888999999999999 655 78888888877
Q ss_pred HHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHH
Q 002961 571 RMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAA 613 (862)
Q Consensus 571 R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~ 613 (862)
....|+....+..+. ++..+..++..++|--.+ ....++.+.
T Consensus 193 iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~-Ait~Lqsls 235 (346)
T KOG0989|consen 193 IVDRLEKIASKEGVDIDDDALKLIAKISDGDLRR-AITTLQSLS 235 (346)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-HHHHHHHhh
Confidence 777777777655544 344567788887774443 334444443
No 135
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=4.2e-09 Score=125.53 Aligned_cols=183 Identities=21% Similarity=0.258 Sum_probs=123.4
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceee--eeccc-----------chhh-hc----ccchhhHHHHHHHHHhc-
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISASQ-----------FVEI-YV----GVGASRVRSLYQEAKDN- 487 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~--i~~~~-----------~~~~-~~----gq~~~~l~~~f~~a~~~- 487 (862)
+.+..++|+||+|+||||++++++..+.+.-+. -.|+. .... .+ ..+...++.+.+.+...
T Consensus 36 ~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p 115 (576)
T PRK14965 36 RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLP 115 (576)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhcc
Confidence 445678999999999999999999987543110 00110 0000 01 11223456666665432
Q ss_pred ---CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCC
Q 002961 488 ---APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIP 564 (862)
Q Consensus 488 ---~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~ 564 (862)
...|++|||+|.+... ..+.|+..|+.. ..++++|.+|+.++.|.+.+++ |+. ++.|.
T Consensus 116 ~~~~~KVvIIdev~~Lt~~--------------a~naLLk~LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~ 176 (576)
T PRK14965 116 SRSRYKIFIIDEVHMLSTN--------------AFNALLKTLEEP--PPHVKFIFATTEPHKVPITILS--RCQ-RFDFR 176 (576)
T ss_pred ccCCceEEEEEChhhCCHH--------------HHHHHHHHHHcC--CCCeEEEEEeCChhhhhHHHHH--hhh-hhhcC
Confidence 2358999999988643 678899999854 4477888888888999999998 553 88999
Q ss_pred CCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 002961 565 KPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 633 (862)
Q Consensus 565 ~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al 633 (862)
.++.++....+...+....+. ++..+..++..+.| +.+++.+++..+... .+ ..||.+++...+
T Consensus 177 ~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr~al~~Ldqliay---~g-~~It~edV~~ll 241 (576)
T PRK14965 177 RIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMRDSLSTLDQVLAF---CG-DAVGDDDVAELL 241 (576)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh---cc-CCCCHHHHHHHh
Confidence 999999888888777655433 34556677777776 556666777655433 22 358888887663
No 136
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.99 E-value=2e-09 Score=118.25 Aligned_cols=142 Identities=16% Similarity=0.154 Sum_probs=98.7
Q ss_pred ccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhh--hcccchh------h----HHHHHHHHHhcCCcee
Q 002961 425 GVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI--YVGVGAS------R----VRSLYQEAKDNAPSVV 492 (862)
Q Consensus 425 ~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~--~~gq~~~------~----l~~~f~~a~~~~p~iL 492 (862)
++..+++|+|.|+|||||||+++.||..++.+++.+++...... ++|...- . ....+..+. ..+.++
T Consensus 60 ~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~il 138 (327)
T TIGR01650 60 GFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVAL 138 (327)
T ss_pred HHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEE
Confidence 34556789999999999999999999999999999988765544 3443210 0 112233333 245689
Q ss_pred EhHHHHHhhhhccCcCCCCchhHHHHHHHHHHh-----hcc----ccCCCcEEEEEecCCCC------------CCCccc
Q 002961 493 FIDELDAVGRERGLIKGSGGQERDATLNQLLVC-----LDG----FEGRGNVITIASTNRPD------------ILDPAL 551 (862)
Q Consensus 493 ~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~-----Ld~----~~~~~~vlvI~tTN~~~------------~Ld~aL 551 (862)
++||++...++ ....++.+|+. +.+ +.....+.||+|+|..+ .++.++
T Consensus 139 llDEin~a~p~-----------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~ 207 (327)
T TIGR01650 139 CFDEYDAGRPD-----------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQ 207 (327)
T ss_pred EechhhccCHH-----------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHH
Confidence 99999987543 11234444442 111 12334688999999865 267889
Q ss_pred cCCCCccccccCCCCCHHhHHHHHHHHHc
Q 002961 552 VRPGRFDRKIFIPKPGLIGRMEILKVHAR 580 (862)
Q Consensus 552 lrpgRfd~~I~~~~P~~~~R~~Il~~~l~ 580 (862)
+. ||-.++.+.+|+.++-.+|+.....
T Consensus 208 lD--RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 208 MD--RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred Hh--heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 88 9988889999999999999987653
No 137
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.99 E-value=3.3e-09 Score=122.70 Aligned_cols=184 Identities=20% Similarity=0.292 Sum_probs=131.5
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCcee-------ee------ecccchhh-----hcccchhhHHHHHHHHHh--
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF-------SI------SASQFVEI-----YVGVGASRVRSLYQEAKD-- 486 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~-------~i------~~~~~~~~-----~~gq~~~~l~~~f~~a~~-- 486 (862)
+...+.+|+||.|+||||++|.+|..+++.-. .+ .-+.+.+. -...+.+.++.+.+.+..
T Consensus 36 ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P 115 (515)
T COG2812 36 RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAP 115 (515)
T ss_pred cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCC
Confidence 45567899999999999999999998755421 11 11111110 112234456777777653
Q ss_pred --cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCC
Q 002961 487 --NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIP 564 (862)
Q Consensus 487 --~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~ 564 (862)
..+.|.+|||++.+... .+|.||..++. ++.+|++|.+|..+..+|+.+++ |.. ++.|.
T Consensus 116 ~~~ryKVyiIDEvHMLS~~--------------afNALLKTLEE--PP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fk 176 (515)
T COG2812 116 SEGRYKVYIIDEVHMLSKQ--------------AFNALLKTLEE--PPSHVKFILATTEPQKIPNTILS--RCQ-RFDFK 176 (515)
T ss_pred ccccceEEEEecHHhhhHH--------------HHHHHhccccc--CccCeEEEEecCCcCcCchhhhh--ccc-ccccc
Confidence 23568999999988654 88999999984 45689999999999999999999 543 77888
Q ss_pred CCCHHhHHHHHHHHHccCCCCCc-ccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 565 KPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 565 ~P~~~~R~~Il~~~l~~~~~~~~-~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
.-+.++....+...+.+..+.-+ ..+..+|...+| |.+|...++..+... +...||.+++.+.+.
T Consensus 177 ri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslLDq~i~~----~~~~It~~~v~~~lG 242 (515)
T COG2812 177 RLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLLDQAIAF----GEGEITLESVRDMLG 242 (515)
T ss_pred CCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHHHHHHHc----cCCcccHHHHHHHhC
Confidence 88888988888888877665544 345566777766 778888999887633 225678877776654
No 138
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=2.6e-09 Score=121.37 Aligned_cols=160 Identities=21% Similarity=0.318 Sum_probs=104.2
Q ss_pred ccccCCeEEEECCCCCchhHHHHHHHhhccCceee-eeccc------ch-----hh-hc-----ccchhhHHHHHHHHHh
Q 002961 425 GVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS-ISASQ------FV-----EI-YV-----GVGASRVRSLYQEAKD 486 (862)
Q Consensus 425 ~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~-i~~~~------~~-----~~-~~-----gq~~~~l~~~f~~a~~ 486 (862)
+.+.+..++|+||+|+|||++++.+|..+...... -.|+. +. +. ++ .-....++.+++.+..
T Consensus 32 ~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~ 111 (394)
T PRK07940 32 GSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAAR 111 (394)
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHh
Confidence 34567789999999999999999999876432100 00110 00 00 00 0122345777776653
Q ss_pred c----CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCcccccc
Q 002961 487 N----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIF 562 (862)
Q Consensus 487 ~----~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~ 562 (862)
. ...|++|||+|.+... ..|.||..|+... .++++|.+|+.++.++|+++| |+ ..+.
T Consensus 112 ~p~~~~~kViiIDead~m~~~--------------aanaLLk~LEep~--~~~~fIL~a~~~~~llpTIrS--Rc-~~i~ 172 (394)
T PRK07940 112 RPSTGRWRIVVIEDADRLTER--------------AANALLKAVEEPP--PRTVWLLCAPSPEDVLPTIRS--RC-RHVA 172 (394)
T ss_pred CcccCCcEEEEEechhhcCHH--------------HHHHHHHHhhcCC--CCCeEEEEECChHHChHHHHh--hC-eEEE
Confidence 2 2458999999999654 5688888888543 344555555558999999999 55 3899
Q ss_pred CCCCCHHhHHHHHHHHHccCCCCCcccHHHHHhhcCCCCHHHHHH
Q 002961 563 IPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELAN 607 (862)
Q Consensus 563 ~~~P~~~~R~~Il~~~l~~~~~~~~~dl~~lA~~t~G~s~adI~~ 607 (862)
|++|+.++...++.... .+ +......++..+.|..+..+.-
T Consensus 173 f~~~~~~~i~~~L~~~~---~~-~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 173 LRTPSVEAVAEVLVRRD---GV-DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 99999998887776332 22 2344566788888877765533
No 139
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.97 E-value=2.3e-09 Score=118.52 Aligned_cols=130 Identities=23% Similarity=0.349 Sum_probs=87.3
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHH-hcCCceeEhHHHHHhhhhccCc
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAK-DNAPSVVFIDELDAVGRERGLI 507 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~-~~~p~iL~iDEid~l~~~~~~~ 507 (862)
|..++|+||+|+|||+++++++..++.+++.++++. .. .......+........ ...+.+++|||+|.+...
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~--~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~---- 115 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CR--IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA---- 115 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-cc--HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH----
Confidence 445667999999999999999999888888888765 11 1111111211111111 124679999999877221
Q ss_pred CCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHH
Q 002961 508 KGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 508 ~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l 579 (862)
. ....|...++... .++.+|.+||.++.+++++++ |+. .+.|+.|+.+++..++..++
T Consensus 116 ------~---~~~~L~~~le~~~--~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 116 ------D---AQRHLRSFMEAYS--KNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred ------H---HHHHHHHHHHhcC--CCceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 1 2233333455433 456788899999999999998 775 78999999999988876543
No 140
>PRK09087 hypothetical protein; Validated
Probab=98.97 E-value=3.1e-09 Score=112.29 Aligned_cols=171 Identities=18% Similarity=0.165 Sum_probs=111.3
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccCcCC
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKG 509 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~ 509 (862)
..++|+||+|+|||||+++++...+.. +++...+. ..++..+.. +++++|+++.+...
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~-----------~~~~~~~~~---~~l~iDDi~~~~~~------ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIG-----------SDAANAAAE---GPVLIEDIDAGGFD------ 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcc-----------hHHHHhhhc---CeEEEECCCCCCCC------
Confidence 348999999999999999999775433 33332211 112222211 47899999865211
Q ss_pred CCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCC---CCccccCCCCcc--ccccCCCCCHHhHHHHHHHHHccCCC
Q 002961 510 SGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHARKKPM 584 (862)
Q Consensus 510 Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~---Ld~aLlrpgRfd--~~I~~~~P~~~~R~~Il~~~l~~~~~ 584 (862)
...|...++.....+..+||+++..+.. ..+.|++ |+. .++.+.+|+.++|..|++..+....+
T Consensus 103 ---------~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~ 171 (226)
T PRK09087 103 ---------ETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQL 171 (226)
T ss_pred ---------HHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCC
Confidence 1224444444445556677777755543 3678888 664 68999999999999999999876544
Q ss_pred C-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 002961 585 A-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 635 (862)
Q Consensus 585 ~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 635 (862)
. ++..+..|+....| +.+.+..+++.....+...+ ..||...+.+++..
T Consensus 172 ~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~ 221 (226)
T PRK09087 172 YVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVLNE 221 (226)
T ss_pred CCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHh
Confidence 3 33446667777764 45556666666554454444 46999999988763
No 141
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.97 E-value=1.9e-09 Score=102.98 Aligned_cols=121 Identities=45% Similarity=0.662 Sum_probs=78.2
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhcccchhh---HHHHHHHHHhcCCceeEhHHHHHhh
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASR---VRSLYQEAKDNAPSVVFIDELDAVG 501 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~gq~~~~---l~~~f~~a~~~~p~iL~iDEid~l~ 501 (862)
.+..++|+||+|+|||++++.++..+ +.+++.+++.............. ............+.++++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 35578999999999999999999988 77777777765433211111000 0111222334457899999999863
Q ss_pred hhccCcCCCCchhHHHHHHHHHHhhccccC----CCcEEEEEecCCCC--CCCccccCCCCccccccCC
Q 002961 502 RERGLIKGSGGQERDATLNQLLVCLDGFEG----RGNVITIASTNRPD--ILDPALVRPGRFDRKIFIP 564 (862)
Q Consensus 502 ~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~----~~~vlvI~tTN~~~--~Ld~aLlrpgRfd~~I~~~ 564 (862)
.. ....++..+..... ..++.+|+++|... .+++.+.+ ||+.++.++
T Consensus 98 ~~--------------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 RG--------------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred HH--------------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 22 22334444443332 35788888888776 67777777 888777775
No 142
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.95 E-value=9.7e-09 Score=120.10 Aligned_cols=184 Identities=20% Similarity=0.229 Sum_probs=122.4
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCcee-------ee-ecccch-----hhh-cc----cchhhHHHHHHHHHhc-
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF-------SI-SASQFV-----EIY-VG----VGASRVRSLYQEAKDN- 487 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~-------~i-~~~~~~-----~~~-~g----q~~~~l~~~f~~a~~~- 487 (862)
+.+..++|+||+|+||||++++++..+...-+ .+ +|.... ..+ .+ .+...++.+.+.....
T Consensus 34 rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P 113 (535)
T PRK08451 34 RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKP 113 (535)
T ss_pred CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCc
Confidence 34556799999999999999999987632110 00 000000 000 01 1123455555543322
Q ss_pred ---CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCC
Q 002961 488 ---APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIP 564 (862)
Q Consensus 488 ---~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~ 564 (862)
...|++|||++.+... .++.||..|+... ..+.+|.+|+.+..+.+++++ |. .++.|.
T Consensus 114 ~~~~~KVvIIDEad~Lt~~--------------A~NALLK~LEEpp--~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~ 174 (535)
T PRK08451 114 SMARFKIFIIDEVHMLTKE--------------AFNALLKTLEEPP--SYVKFILATTDPLKLPATILS--RT-QHFRFK 174 (535)
T ss_pred ccCCeEEEEEECcccCCHH--------------HHHHHHHHHhhcC--CceEEEEEECChhhCchHHHh--hc-eeEEcC
Confidence 2348999999888543 7788999998753 456677777778999999999 54 388999
Q ss_pred CCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 565 KPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 565 ~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
+++.++....+...+....+. ++..+..++....| +.+++.+++..+...+ ...||.+++...+.
T Consensus 175 ~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR~alnlLdqai~~~----~~~It~~~V~~~lg 240 (535)
T PRK08451 175 QIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLRDTLTLLDQAIIYC----KNAITESKVADMLG 240 (535)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhc----CCCCCHHHHHHHhC
Confidence 999999888888877654433 34456677777765 7777888887766433 34688888876643
No 143
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.94 E-value=9.6e-09 Score=114.46 Aligned_cols=133 Identities=19% Similarity=0.166 Sum_probs=93.9
Q ss_pred CceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccc-----------cCCCcEEEEEecCCCC-CCCccccCCCC
Q 002961 489 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF-----------EGRGNVITIASTNRPD-ILDPALVRPGR 556 (862)
Q Consensus 489 p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~-----------~~~~~vlvI~tTN~~~-~Ld~aLlrpgR 556 (862)
.++|++||++.+... +.+.|+..|+.- .-...+++|+|.|..+ .++++++. |
T Consensus 145 ~GiL~lDEInrL~~~--------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--R 208 (350)
T CHL00081 145 RGILYVDEVNLLDDH--------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--R 208 (350)
T ss_pred CCEEEecChHhCCHH--------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--H
Confidence 468999999988654 566677776531 1134688888888765 69999999 9
Q ss_pred ccccccCCCCC-HHhHHHHHHHHHccC--CC----------------------------CCccc---HHHHHhhcCCCCH
Q 002961 557 FDRKIFIPKPG-LIGRMEILKVHARKK--PM----------------------------ADDVD---YLAVASMTDGMVG 602 (862)
Q Consensus 557 fd~~I~~~~P~-~~~R~~Il~~~l~~~--~~----------------------------~~~~d---l~~lA~~t~G~s~ 602 (862)
|..++.+..|+ .+.+.+|++...... .. .++.. +..++..+.--++
T Consensus 209 f~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~ 288 (350)
T CHL00081 209 FGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGL 288 (350)
T ss_pred hCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCC
Confidence 99999999997 589999998753211 00 00101 2233334433355
Q ss_pred HHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHh
Q 002961 603 AELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 637 (862)
Q Consensus 603 adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 637 (862)
+--..+++.|...|..+|+..|+.+||..++....
T Consensus 289 Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL 323 (350)
T CHL00081 289 RGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCL 323 (350)
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 55558889999999999999999999999987443
No 144
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=1.1e-08 Score=117.12 Aligned_cols=187 Identities=17% Similarity=0.208 Sum_probs=120.3
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCcee----------eeecccc------h-----h--hhcc---cchhhHHHH
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF----------SISASQF------V-----E--IYVG---VGASRVRSL 480 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~----------~i~~~~~------~-----~--~~~g---q~~~~l~~~ 480 (862)
+.+..++|+||+|+||||+++++|..+..... .-.|+.. . . .+-+ .....++.+
T Consensus 36 ~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l 115 (397)
T PRK14955 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLL 115 (397)
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHH
Confidence 44667999999999999999999998754210 0011110 0 0 0111 112345555
Q ss_pred HHHHHhc----CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCC
Q 002961 481 YQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGR 556 (862)
Q Consensus 481 f~~a~~~----~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgR 556 (862)
.+.+... ...+++|||++.+... ..+.|+..++... ..+++|.+|+.+..+.+++.+ |
T Consensus 116 ~~~~~~~p~~~~~kvvIIdea~~l~~~--------------~~~~LLk~LEep~--~~t~~Il~t~~~~kl~~tl~s--R 177 (397)
T PRK14955 116 RENVRYGPQKGRYRVYIIDEVHMLSIA--------------AFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--R 177 (397)
T ss_pred HHHHhhchhcCCeEEEEEeChhhCCHH--------------HHHHHHHHHhcCC--CCeEEEEEeCChHHhHHHHHH--H
Confidence 5555321 2358999999988543 5677888887543 355666666667888888887 5
Q ss_pred ccccccCCCCCHHhHHHHHHHHHccCCC-CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHH-hCCcccCHHHHHHHH
Q 002961 557 FDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMR-DGRTEITTDDLLQAA 633 (862)
Q Consensus 557 fd~~I~~~~P~~~~R~~Il~~~l~~~~~-~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~-~~~~~It~edl~~Al 633 (862)
.. ++.|.+++.++....+...+..... .++..+..++..+.| +.+.+.+.++.+...+.. .....||.+++.+++
T Consensus 178 ~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 178 CQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 54 7999999999988888877765443 234456667777765 666677777766544422 234579999888776
No 145
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.90 E-value=1.6e-08 Score=119.75 Aligned_cols=184 Identities=19% Similarity=0.226 Sum_probs=122.3
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCc-------eeee-ecccc-----hhh--hcc---cchhhHHHHHHHHHh--
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN-------FFSI-SASQF-----VEI--YVG---VGASRVRSLYQEAKD-- 486 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~-------~~~i-~~~~~-----~~~--~~g---q~~~~l~~~f~~a~~-- 486 (862)
+.+..++|+||+|+||||+++++|..+... .+.+ +|-.+ ... +-| .....++.+.+.+..
T Consensus 36 ~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p 115 (563)
T PRK06647 36 KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPP 115 (563)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhch
Confidence 345668999999999999999999987542 1111 00000 000 111 112334555444332
Q ss_pred --cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCC
Q 002961 487 --NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIP 564 (862)
Q Consensus 487 --~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~ 564 (862)
....+++|||++.+... .++.|+..|+. ++..+++|++|+.+..+.++|++ |+. .+.|.
T Consensus 116 ~~~~~KVvIIDEa~~Ls~~--------------a~naLLK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~ 176 (563)
T PRK06647 116 ASSRYRVYIIDEVHMLSNS--------------AFNALLKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFR 176 (563)
T ss_pred hcCCCEEEEEEChhhcCHH--------------HHHHHHHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEec
Confidence 23468999999988543 67888888885 34567777777778889999998 654 68899
Q ss_pred CCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 565 KPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 565 ~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
+++.++...+++..+....+. ++..+..++..+.| +.+++.+++..+... +...||.+++.+++.
T Consensus 177 ~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~alslLdklis~----~~~~It~e~V~~llg 242 (563)
T PRK06647 177 LLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAYTLFDQVVSF----SDSDITLEQIRSKMG 242 (563)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhh----cCCCCCHHHHHHHhC
Confidence 999999999888877554433 34456667777765 677777888766533 224589888887653
No 146
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.89 E-value=2.9e-08 Score=106.93 Aligned_cols=195 Identities=13% Similarity=0.187 Sum_probs=115.7
Q ss_pred ccccCC-eEEEECCCCCchhHHHHHHHhhccCc-eee---eec----ccchhh---hcccc---h---hhHHHHH----H
Q 002961 425 GVRIPG-GILLCGPPGVGKTLLAKAVAGEAGVN-FFS---ISA----SQFVEI---YVGVG---A---SRVRSLY----Q 482 (862)
Q Consensus 425 ~i~~~~-~vlL~GpnGtGKTtLakaLA~~l~~~-~~~---i~~----~~~~~~---~~gq~---~---~~l~~~f----~ 482 (862)
++..+. -++|+||+|+||||+++.+++.+... ... +.. .++... .+|.. . ..+..+. .
T Consensus 38 ~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 38 GLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred HHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 344444 48899999999999999999987532 111 110 000000 11211 0 1111221 2
Q ss_pred HHHhcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEec--CCCCCCC-c---cccCCCC
Q 002961 483 EAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST--NRPDILD-P---ALVRPGR 556 (862)
Q Consensus 483 ~a~~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tT--N~~~~Ld-~---aLlrpgR 556 (862)
......+.++++||++.+... ....+..+... .. .....+.|+.+. ...+.+. + .+.+ |
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~-----------~~~~l~~l~~~-~~-~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r 182 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPE-----------LLEELRMLSNF-QT-DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--R 182 (269)
T ss_pred HHhCCCCeEEEEECcccCCHH-----------HHHHHHHHhCc-cc-CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--h
Confidence 223455678999999886432 01122222211 11 112223333332 2121221 1 2444 7
Q ss_pred ccccccCCCCCHHhHHHHHHHHHccCC-----CCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHH
Q 002961 557 FDRKIFIPKPGLIGRMEILKVHARKKP-----MADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQ 631 (862)
Q Consensus 557 fd~~I~~~~P~~~~R~~Il~~~l~~~~-----~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~ 631 (862)
+...+.+++.+.++..+++...+.... .-.+..+..+...+.|... .|..+++.+...|..++...|+.+++..
T Consensus 183 ~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~~~~~i~~~~v~~ 261 (269)
T TIGR03015 183 IIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLEEKREIGGEEVRE 261 (269)
T ss_pred eeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 777889999999999999998875432 1234567778889988754 5999999999998889999999999999
Q ss_pred HHHH
Q 002961 632 AAQI 635 (862)
Q Consensus 632 Al~~ 635 (862)
++..
T Consensus 262 ~~~~ 265 (269)
T TIGR03015 262 VIAE 265 (269)
T ss_pred HHHH
Confidence 8763
No 147
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.89 E-value=3.1e-08 Score=114.79 Aligned_cols=184 Identities=18% Similarity=0.226 Sum_probs=119.1
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCce--------ee-eecccch-----hh--hcc---cchhhHHHHHHHHHh-
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNF--------FS-ISASQFV-----EI--YVG---VGASRVRSLYQEAKD- 486 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~--------~~-i~~~~~~-----~~--~~g---q~~~~l~~~f~~a~~- 486 (862)
+.+..++|+||+|+||||+++++|..+.... +. .+|..+. .. +-| .+...++.+.+.+..
T Consensus 37 ~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~ 116 (451)
T PRK06305 37 RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFT 116 (451)
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhh
Confidence 3456789999999999999999998764321 00 0000000 00 111 112334433333321
Q ss_pred ---cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccC
Q 002961 487 ---NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFI 563 (862)
Q Consensus 487 ---~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~ 563 (862)
....+++|||+|.+... ..+.|+..|+.. ...+++|++||.+..+.+++++ |+. .+.|
T Consensus 117 ~~~~~~kvvIIdead~lt~~--------------~~n~LLk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f 177 (451)
T PRK06305 117 PSKSRYKIYIIDEVHMLTKE--------------AFNSLLKTLEEP--PQHVKFFLATTEIHKIPGTILS--RCQ-KMHL 177 (451)
T ss_pred hhcCCCEEEEEecHHhhCHH--------------HHHHHHHHhhcC--CCCceEEEEeCChHhcchHHHH--hce-EEeC
Confidence 34579999999988543 567888888864 3466777777888889999998 554 7899
Q ss_pred CCCCHHhHHHHHHHHHccCCC-CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 564 PKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 564 ~~P~~~~R~~Il~~~l~~~~~-~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
++++.++...++...+..... .++..+..++..+.| +.+++.++++.... ..+ ..|+.+++.+++.
T Consensus 178 ~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a~~~Lekl~~---~~~-~~It~~~V~~l~~ 244 (451)
T PRK06305 178 KRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRDAESLYDYVVG---LFP-KSLDPDSVAKALG 244 (451)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH---hcc-CCcCHHHHHHHHC
Confidence 999999999888887765443 234456677877765 55556566665432 223 3499998887753
No 148
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.88 E-value=2.1e-08 Score=110.60 Aligned_cols=173 Identities=23% Similarity=0.271 Sum_probs=110.7
Q ss_pred eEEEECCCCCchhHHHHHHHhhccC-----ceeeeecccchhhhcccchhhHHHHHHHHHh------cCCceeEhHHHHH
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGV-----NFFSISASQFVEIYVGVGASRVRSLYQEAKD------NAPSVVFIDELDA 499 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~-----~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~------~~p~iL~iDEid~ 499 (862)
.++|+||+|+||||+++++++.+.. .++.++.+.. .....+...+..... ..+.++++||++.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~ 113 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE------RGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADN 113 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc------cchHHHHHHHHHHHhcCCCCCCCceEEEEeCccc
Confidence 5899999999999999999998632 2233322211 011112222222211 1245899999988
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHH
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l 579 (862)
+... ..+.|+..++.... ...+|.++|....+.+++.+ |+. ++.|++++.++...+++.++
T Consensus 114 l~~~--------------~~~~L~~~le~~~~--~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~ 174 (319)
T PRK00440 114 LTSD--------------AQQALRRTMEMYSQ--NTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIA 174 (319)
T ss_pred CCHH--------------HHHHHHHHHhcCCC--CCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHH
Confidence 7432 33456666665443 34555667777777778887 655 68999999999999999888
Q ss_pred ccCCC-CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 580 RKKPM-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 580 ~~~~~-~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
....+ -++..+..++..+.| +.+.+.+.++.+.. . ...||.+++..++.
T Consensus 175 ~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~~----~-~~~it~~~v~~~~~ 224 (319)
T PRK00440 175 ENEGIEITDDALEAIYYVSEG-DMRKAINALQAAAA----T-GKEVTEEAVYKITG 224 (319)
T ss_pred HHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH----c-CCCCCHHHHHHHhC
Confidence 66543 234457778877765 44445555554432 1 35799999988763
No 149
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=2.5e-08 Score=118.95 Aligned_cols=187 Identities=17% Similarity=0.216 Sum_probs=120.8
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceee----------eecccc------h-----hh--hcc---cchhhHHHH
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS----------ISASQF------V-----EI--YVG---VGASRVRSL 480 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~----------i~~~~~------~-----~~--~~g---q~~~~l~~~ 480 (862)
+.+..++|+||+|+||||+++++|..+.+.... -.|+.. . .. +-+ .....++.+
T Consensus 36 ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l 115 (620)
T PRK14954 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQL 115 (620)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHH
Confidence 556779999999999999999999987552110 011110 0 00 111 112345555
Q ss_pred HHHHHh----cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCC
Q 002961 481 YQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGR 556 (862)
Q Consensus 481 f~~a~~----~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgR 556 (862)
.+.+.. ....|++|||+|.+... ..+.|+..|+...+ .+++|.+|+.+..+.+++.+ |
T Consensus 116 ~e~~~~~P~~~~~KVvIIdEad~Lt~~--------------a~naLLK~LEePp~--~tv~IL~t~~~~kLl~TI~S--R 177 (620)
T PRK14954 116 RENVRYGPQKGRYRVYIIDEVHMLSTA--------------AFNAFLKTLEEPPP--HAIFIFATTELHKIPATIAS--R 177 (620)
T ss_pred HHHHHhhhhcCCCEEEEEeChhhcCHH--------------HHHHHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--h
Confidence 555532 23458999999888543 57888888886543 45666666677888889988 4
Q ss_pred ccccccCCCCCHHhHHHHHHHHHccCCC-CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHH-hCCcccCHHHHHHHH
Q 002961 557 FDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMR-DGRTEITTDDLLQAA 633 (862)
Q Consensus 557 fd~~I~~~~P~~~~R~~Il~~~l~~~~~-~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~-~~~~~It~edl~~Al 633 (862)
. ..+.|.+++.++....+...+..... .++..+..++..+.| +.+++.+.++.....+.. .....||.+++.+.+
T Consensus 178 c-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 178 C-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred c-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 3 38999999999988888877665433 344556777777765 555566666655433311 224568888887765
No 150
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.86 E-value=2.6e-08 Score=119.03 Aligned_cols=188 Identities=21% Similarity=0.231 Sum_probs=123.0
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccC--ceeeeecccchhhhcccchhhHHHHHH---------HHHhcCCceeEhHHHH
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISASQFVEIYVGVGASRVRSLYQ---------EAKDNAPSVVFIDELD 498 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~--~~~~i~~~~~~~~~~gq~~~~l~~~f~---------~a~~~~p~iL~iDEid 498 (862)
.+|+|.|++|||||+++++|+..++. +|+.+..+......+|.. .+...+. .+...+.++|++||++
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 47999999999999999999997654 477666432222233321 0000000 0111233589999999
Q ss_pred HhhhhccCcCCCCchhHHHHHHHHHHhhcccc-----------CCCcEEEEEecCCCC---CCCccccCCCCccccccCC
Q 002961 499 AVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD---ILDPALVRPGRFDRKIFIP 564 (862)
Q Consensus 499 ~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~-----------~~~~vlvI~tTN~~~---~Ld~aLlrpgRfd~~I~~~ 564 (862)
.+... +++.|+..|+.-. -...+.||+|+|..+ .++++|+. ||+.+|.+.
T Consensus 95 rl~~~--------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~ 158 (589)
T TIGR02031 95 LLDDG--------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLE 158 (589)
T ss_pred hCCHH--------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecC
Confidence 98654 6777887776421 124688999999865 68899999 999888776
Q ss_pred C-CCHHhHHHHHHHHHccC-------------------------CCCCcccHHHHHh--hcCCCC-HHHHHHHHHHHHHH
Q 002961 565 K-PGLIGRMEILKVHARKK-------------------------PMADDVDYLAVAS--MTDGMV-GAELANIVEVAAIN 615 (862)
Q Consensus 565 ~-P~~~~R~~Il~~~l~~~-------------------------~~~~~~dl~~lA~--~t~G~s-~adI~~lv~~A~~~ 615 (862)
. |+.++|.+|++.++... .+. +..+..++. ...|.+ .+.-..+++.|...
T Consensus 159 ~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~-~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~ 237 (589)
T TIGR02031 159 DVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTIS-AEQVKELVLTAASLGISGHRADLFAVRAAKAH 237 (589)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCC-HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHH
Confidence 4 56777889887754211 111 111222221 122333 44444788889999
Q ss_pred HHHhCCcccCHHHHHHHHHHH
Q 002961 616 MMRDGRTEITTDDLLQAAQIE 636 (862)
Q Consensus 616 A~~~~~~~It~edl~~Al~~~ 636 (862)
|..+|+..|+.+|+..|+...
T Consensus 238 Aal~gr~~V~~~Dv~~a~~lv 258 (589)
T TIGR02031 238 AALHGRTEVTEEDLKLAVELV 258 (589)
T ss_pred HHHhCCCCCCHHHHHHHHHHH
Confidence 999999999999999999843
No 151
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.86 E-value=3.5e-08 Score=118.10 Aligned_cols=183 Identities=18% Similarity=0.202 Sum_probs=118.1
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceee---eeccc------chhh----h------cccchhhHHHHHHHHHh--
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS---ISASQ------FVEI----Y------VGVGASRVRSLYQEAKD-- 486 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~---i~~~~------~~~~----~------~gq~~~~l~~~f~~a~~-- 486 (862)
.+..++|+||+|+||||++++++..+.+.... ..|+. +... + .......++.+.+.+..
T Consensus 37 i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p 116 (585)
T PRK14950 37 VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRP 116 (585)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCc
Confidence 45568999999999999999999887532110 01110 0000 0 01112334444444332
Q ss_pred --cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCC
Q 002961 487 --NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIP 564 (862)
Q Consensus 487 --~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~ 564 (862)
....|++|||++.+... .++.|+..|+... ..++||.+|+..+.+.+.+++ |+. .+.|.
T Consensus 117 ~~~~~kVvIIDEa~~L~~~--------------a~naLLk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~ 177 (585)
T PRK14950 117 ALARYKVYIIDEVHMLSTA--------------AFNALLKTLEEPP--PHAIFILATTEVHKVPATILS--RCQ-RFDFH 177 (585)
T ss_pred ccCCeEEEEEeChHhCCHH--------------HHHHHHHHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeCC
Confidence 22458999999987543 6788888888654 356666667777888888888 554 68899
Q ss_pred CCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 565 KPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 565 ~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
.++..+...++...+....+. ++..+..++..+.| +.+++.+.++.... . +...||.+++..++.
T Consensus 178 ~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al~~LekL~~---y-~~~~It~e~V~~ll~ 243 (585)
T PRK14950 178 RHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDAENLLQQLAT---T-YGGEISLSQVQSLLG 243 (585)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH---h-cCCCCCHHHHHHHhc
Confidence 999999888888777655432 33446677777765 77777777775432 2 334699888876544
No 152
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.86 E-value=8.7e-09 Score=114.94 Aligned_cols=134 Identities=32% Similarity=0.434 Sum_probs=93.4
Q ss_pred ccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhh--hcccchhh-----------H-HHHHHHHHhcCCc
Q 002961 425 GVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI--YVGVGASR-----------V-RSLYQEAKDNAPS 490 (862)
Q Consensus 425 ~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~--~~gq~~~~-----------l-~~~f~~a~~~~p~ 490 (862)
.+..+.+++|.||||+|||+|++.+|..++.++..+.|...... .+|...-. + ..+|.... +
T Consensus 39 a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ 114 (329)
T COG0714 39 ALLAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----V 114 (329)
T ss_pred HHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----e
Confidence 45567789999999999999999999999999999988764432 11111000 0 11222111 3
Q ss_pred eeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcc----------ccCCCcEEEEEecC-----CCCCCCccccCCC
Q 002961 491 VVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG----------FEGRGNVITIASTN-----RPDILDPALVRPG 555 (862)
Q Consensus 491 iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~----------~~~~~~vlvI~tTN-----~~~~Ld~aLlrpg 555 (862)
++++|||+...+. +.+.|+..|+. +.-...+++|+|+| ....+++++++
T Consensus 115 ill~DEInra~p~--------------~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld-- 178 (329)
T COG0714 115 ILLLDEINRAPPE--------------VQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD-- 178 (329)
T ss_pred EEEEeccccCCHH--------------HHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--
Confidence 8999999887654 67788887775 22335688999999 44568999999
Q ss_pred CccccccCCCCCH-HhHHHHHHHH
Q 002961 556 RFDRKIFIPKPGL-IGRMEILKVH 578 (862)
Q Consensus 556 Rfd~~I~~~~P~~-~~R~~Il~~~ 578 (862)
||-..+++++|+. .+...++...
T Consensus 179 Rf~~~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 179 RFLLRIYVDYPDSEEEERIILARV 202 (329)
T ss_pred hEEEEEecCCCCchHHHHHHHHhC
Confidence 9988999999944 4444444433
No 153
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=3e-08 Score=118.80 Aligned_cols=181 Identities=20% Similarity=0.252 Sum_probs=115.9
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceee----eeccc--------------ch--hhhcccchhhHHHHHHHHHhc
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS----ISASQ--------------FV--EIYVGVGASRVRSLYQEAKDN 487 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~----i~~~~--------------~~--~~~~gq~~~~l~~~f~~a~~~ 487 (862)
.+..++|+||+|+||||+++++|..+.+.... -.|+. +. ..........++.+++.+...
T Consensus 37 l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~ 116 (620)
T PRK14948 37 IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFA 116 (620)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhC
Confidence 44678999999999999999999987542110 01110 00 000112233556666665432
Q ss_pred ----CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccC
Q 002961 488 ----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFI 563 (862)
Q Consensus 488 ----~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~ 563 (862)
...|++|||+|.+... ..+.||..|+.. ...+++|++|++++.+.++|++ |+. .+.|
T Consensus 117 p~~~~~KViIIDEad~Lt~~--------------a~naLLK~LEeP--p~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f 177 (620)
T PRK14948 117 PVQARWKVYVIDECHMLSTA--------------AFNALLKTLEEP--PPRVVFVLATTDPQRVLPTIIS--RCQ-RFDF 177 (620)
T ss_pred hhcCCceEEEEECccccCHH--------------HHHHHHHHHhcC--CcCeEEEEEeCChhhhhHHHHh--hee-EEEe
Confidence 2358999999988543 678889888853 3467777788888888899988 553 6888
Q ss_pred CCCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 002961 564 PKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 633 (862)
Q Consensus 564 ~~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al 633 (862)
..++.++....+...+...... ++..+..++..+.|. .+++.++++..... . ..||.+++.+.+
T Consensus 178 ~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~-lr~A~~lLeklsL~---~--~~It~e~V~~lv 242 (620)
T PRK14948 178 RRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGG-LRDAESLLDQLSLL---P--GPITPEAVWDLL 242 (620)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHHhc---c--CCCCHHHHHHHh
Confidence 8888888777777666543322 234466777777663 45566666653322 2 247776665543
No 154
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.85 E-value=6.4e-09 Score=117.02 Aligned_cols=85 Identities=22% Similarity=0.353 Sum_probs=59.2
Q ss_pred CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccc--------cCCCcEEEEEecC----CCCCCCccccCCC
Q 002961 488 APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF--------EGRGNVITIASTN----RPDILDPALVRPG 555 (862)
Q Consensus 488 ~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~--------~~~~~vlvI~tTN----~~~~Ld~aLlrpg 555 (862)
.-+|+||||||+++..... .+.+-....+...||..+++. .+.+++++|++.- .|+.|=|.|.-
T Consensus 247 ~~GIVfiDEiDKIa~~~~~--~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G-- 322 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGES--SGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG-- 322 (441)
T ss_pred cCCEEEEEchhhhcccCCC--CCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--
Confidence 3469999999999865321 111122223667788888762 2346788888773 34556677765
Q ss_pred CccccccCCCCCHHhHHHHHH
Q 002961 556 RFDRKIFIPKPGLIGRMEILK 576 (862)
Q Consensus 556 Rfd~~I~~~~P~~~~R~~Il~ 576 (862)
||..++.+.+++.++...||.
T Consensus 323 R~Pi~v~L~~L~~edL~rILt 343 (441)
T TIGR00390 323 RFPIRVELQALTTDDFERILT 343 (441)
T ss_pred ccceEEECCCCCHHHHHHHhc
Confidence 999999999999999998883
No 155
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.84 E-value=2.2e-08 Score=102.44 Aligned_cols=149 Identities=23% Similarity=0.287 Sum_probs=96.6
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCc--eeeeecc--------------cchhhhc-c--cchhhHHHHHHHHHh-
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN--FFSISAS--------------QFVEIYV-G--VGASRVRSLYQEAKD- 486 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~--~~~i~~~--------------~~~~~~~-g--q~~~~l~~~f~~a~~- 486 (862)
+.+..++|+||+|+|||++++.++..+... .....+. ++..... + -..+.++.+.+.+..
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~ 91 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRT 91 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccC
Confidence 345678999999999999999999876321 0000000 0000000 0 112344555555543
Q ss_pred ---cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccC
Q 002961 487 ---NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFI 563 (862)
Q Consensus 487 ---~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~ 563 (862)
....++++||++.+... ..+.|+..|+... ...++|.+||.+..+.+++++ |+. .+.|
T Consensus 92 ~~~~~~kviiide~~~l~~~--------------~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~i~s--r~~-~~~~ 152 (188)
T TIGR00678 92 PQESGRRVVIIEDAERMNEA--------------AANALLKTLEEPP--PNTLFILITPSPEKLLPTIRS--RCQ-VLPF 152 (188)
T ss_pred cccCCeEEEEEechhhhCHH--------------HHHHHHHHhcCCC--CCeEEEEEECChHhChHHHHh--hcE-EeeC
Confidence 23458999999998654 5678888888633 355666667777899999998 553 8999
Q ss_pred CCCCHHhHHHHHHHHHccCCCCCcccHHHHHhhcCC
Q 002961 564 PKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDG 599 (862)
Q Consensus 564 ~~P~~~~R~~Il~~~l~~~~~~~~~dl~~lA~~t~G 599 (862)
++|+.++...++... .+ ++..+..++..+.|
T Consensus 153 ~~~~~~~~~~~l~~~----gi-~~~~~~~i~~~~~g 183 (188)
T TIGR00678 153 PPLSEEALLQWLIRQ----GI-SEEAAELLLALAGG 183 (188)
T ss_pred CCCCHHHHHHHHHHc----CC-CHHHHHHHHHHcCC
Confidence 999999998888776 22 23345566666655
No 156
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.83 E-value=6.3e-09 Score=117.15 Aligned_cols=85 Identities=26% Similarity=0.358 Sum_probs=59.6
Q ss_pred CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccc--------cCCCcEEEEEecC----CCCCCCccccCCC
Q 002961 488 APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF--------EGRGNVITIASTN----RPDILDPALVRPG 555 (862)
Q Consensus 488 ~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~--------~~~~~vlvI~tTN----~~~~Ld~aLlrpg 555 (862)
.-+|+||||||+++...+.. +.+-....+...||..+++. .+.+++++|++.- .|+.|-|.|..
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~--~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G-- 324 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSS--GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG-- 324 (443)
T ss_pred cCCEEEEEcchhhcccCCCC--CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--
Confidence 34699999999998653211 11112223667788888762 2346788888772 34556678865
Q ss_pred CccccccCCCCCHHhHHHHHH
Q 002961 556 RFDRKIFIPKPGLIGRMEILK 576 (862)
Q Consensus 556 Rfd~~I~~~~P~~~~R~~Il~ 576 (862)
||..++.+.+++.++...||.
T Consensus 325 R~Pi~v~L~~L~~~dL~~ILt 345 (443)
T PRK05201 325 RFPIRVELDALTEEDFVRILT 345 (443)
T ss_pred ccceEEECCCCCHHHHHHHhc
Confidence 999999999999999999884
No 157
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.81 E-value=1.2e-08 Score=96.30 Aligned_cols=126 Identities=34% Similarity=0.426 Sum_probs=77.3
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCc---eeeeecccchhh--------------hcccchhhHHHHHHHHHhcCCce
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVN---FFSISASQFVEI--------------YVGVGASRVRSLYQEAKDNAPSV 491 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~---~~~i~~~~~~~~--------------~~gq~~~~l~~~f~~a~~~~p~i 491 (862)
+..++|+|||||||||+++.|+..+... +..+++...... ...........++..+....+++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4578999999999999999999998765 666666543221 11222334567777777777799
Q ss_pred eEhHHHHHhhhhccCcCCCCchhHHHHHHHH--HHhhccccCCCcEEEEEecCC-CCCCCccccCCCCccccccCCCC
Q 002961 492 VFIDELDAVGRERGLIKGSGGQERDATLNQL--LVCLDGFEGRGNVITIASTNR-PDILDPALVRPGRFDRKIFIPKP 566 (862)
Q Consensus 492 L~iDEid~l~~~~~~~~~Sgge~~r~~l~~L--L~~Ld~~~~~~~vlvI~tTN~-~~~Ld~aLlrpgRfd~~I~~~~P 566 (862)
+++||++.+...... ...... ...........+..+|+++|. ....+..+.+ |++..+.+..+
T Consensus 82 iiiDei~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQE----------ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHH----------HHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 999999887543210 000000 000111223456788888886 3333444444 77777776544
No 158
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.81 E-value=2.7e-08 Score=117.24 Aligned_cols=193 Identities=16% Similarity=0.131 Sum_probs=121.0
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhccCceeee----ecccchhh-hcccchh--hHHHHHHHHHhcCCceeEhHHHH
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI----SASQFVEI-YVGVGAS--RVRSLYQEAKDNAPSVVFIDELD 498 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i----~~~~~~~~-~~gq~~~--~l~~~f~~a~~~~p~iL~iDEid 498 (862)
++...+|+|+|+||+|||++++.++.......+.. ++..+... ..+.... .++. ..+.....++++|||++
T Consensus 233 ~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~--G~l~~A~~Gil~iDEi~ 310 (509)
T smart00350 233 IRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEG--GALVLADNGVCCIDEFD 310 (509)
T ss_pred ccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecC--ccEEecCCCEEEEechh
Confidence 34555799999999999999999998764332111 11111000 0000000 0000 00112234689999999
Q ss_pred HhhhhccCcCCCCchhHHHHHHHHHHhhcccc-----------CCCcEEEEEecCCCC-------------CCCccccCC
Q 002961 499 AVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-------------ILDPALVRP 554 (862)
Q Consensus 499 ~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~-----------~~~~vlvI~tTN~~~-------------~Ld~aLlrp 554 (862)
.+... ....|++.|+.-. -+..+.||+|+|+.. .+++++++
T Consensus 311 ~l~~~--------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs- 375 (509)
T smart00350 311 KMDDS--------------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS- 375 (509)
T ss_pred hCCHH--------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC-
Confidence 98544 4556666664311 124688999999753 58999999
Q ss_pred CCccccc-cCCCCCHHhHHHHHHHHHccCC---------CC-----------------------CcccHHHHH-----hh
Q 002961 555 GRFDRKI-FIPKPGLIGRMEILKVHARKKP---------MA-----------------------DDVDYLAVA-----SM 596 (862)
Q Consensus 555 gRfd~~I-~~~~P~~~~R~~Il~~~l~~~~---------~~-----------------------~~~dl~~lA-----~~ 596 (862)
|||..+ ....|+.+...+|.++.+.... .. .+.....+. .+
T Consensus 376 -RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R 454 (509)
T smart00350 376 -RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLR 454 (509)
T ss_pred -ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhc
Confidence 999865 4468899888888887542110 00 000011110 01
Q ss_pred ----------cCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHH
Q 002961 597 ----------TDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 636 (862)
Q Consensus 597 ----------t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~ 636 (862)
..+.|++.+..+++.|...|..+++..|+.+|+..|+...
T Consensus 455 ~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~ 504 (509)
T smart00350 455 KEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLL 504 (509)
T ss_pred ccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 1256899999999999999999999999999999998754
No 159
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.80 E-value=2.9e-08 Score=119.81 Aligned_cols=188 Identities=20% Similarity=0.270 Sum_probs=118.5
Q ss_pred CeEEEECCCCCchhHHHHHHHhhcc-----------------------------------Cceeeeecccchhhhcccch
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAG-----------------------------------VNFFSISASQFVEIYVGVGA 474 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~-----------------------------------~~~~~i~~~~~~~~~~gq~~ 474 (862)
.+|+|.|++||||||++++|+..+. .+++.+.++......+|..
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~- 104 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSL- 104 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcc-
Confidence 4699999999999999999998762 2333333322111122210
Q ss_pred hhHHHHHH---------HHHhcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccc-----------cCCCc
Q 002961 475 SRVRSLYQ---------EAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF-----------EGRGN 534 (862)
Q Consensus 475 ~~l~~~f~---------~a~~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~-----------~~~~~ 534 (862)
.+...+. .+.....++|||||++.+... .++.|+..|+.- ....+
T Consensus 105 -d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~--------------~q~~Ll~~le~g~~~v~r~g~~~~~~~~ 169 (633)
T TIGR02442 105 -DIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDH--------------LVDVLLDAAAMGVNRVEREGLSVSHPAR 169 (633)
T ss_pred -cHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHH--------------HHHHHHHHHhcCCEEEEECCceeeecCC
Confidence 0111110 001123458999999998654 677788777632 11245
Q ss_pred EEEEEecCCC-CCCCccccCCCCccccccCCCCC-HHhHHHHHHHHHccC------------------------------
Q 002961 535 VITIASTNRP-DILDPALVRPGRFDRKIFIPKPG-LIGRMEILKVHARKK------------------------------ 582 (862)
Q Consensus 535 vlvI~tTN~~-~~Ld~aLlrpgRfd~~I~~~~P~-~~~R~~Il~~~l~~~------------------------------ 582 (862)
+++|+|+|.. ..+.++|++ ||+.+|.++.+. .+++.+|+...+...
T Consensus 170 ~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~ 247 (633)
T TIGR02442 170 FVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPS 247 (633)
T ss_pred eEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCC
Confidence 8999999864 368889999 999999998774 567777776532200
Q ss_pred -CCCCcccHHHHHhhc--CCC-CHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHH
Q 002961 583 -PMADDVDYLAVASMT--DGM-VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 636 (862)
Q Consensus 583 -~~~~~~dl~~lA~~t--~G~-s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~ 636 (862)
.+ .+..+..++..+ .|. +.+....+++.|...|..+++..|+.+||..|+...
T Consensus 248 V~i-s~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lv 304 (633)
T TIGR02442 248 VRI-SDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELV 304 (633)
T ss_pred CCC-CHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 01 111122222211 233 344555788989899999999999999999998843
No 160
>PLN03073 ABC transporter F family; Provisional
Probab=98.79 E-value=6.9e-08 Score=117.79 Aligned_cols=133 Identities=18% Similarity=0.206 Sum_probs=78.7
Q ss_pred cccccCccccccc---cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccch-hhhcccch-hh--H
Q 002961 407 QYLERGVDVKFSD---MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV-EIYVGVGA-SR--V 477 (862)
Q Consensus 407 ~l~~~~~s~~~~~---~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~-~~~~gq~~-~~--l 477 (862)
.+.++++++.|++ .+ .++.+..+..++|+||||+|||||+++|+|.+.+..|.+...... -.|+.|.. .. +
T Consensus 508 ~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~ 587 (718)
T PLN03073 508 IISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDL 587 (718)
T ss_pred eEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCc
Confidence 4778888888853 23 377888888999999999999999999999988777777543211 11333321 00 0
Q ss_pred -HHHHHHHHhcCCceeEhHHHHHhhhhccCc---------CCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCC
Q 002961 478 -RSLYQEAKDNAPSVVFIDELDAVGRERGLI---------KGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD 545 (862)
Q Consensus 478 -~~~f~~a~~~~p~iL~iDEid~l~~~~~~~---------~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~ 545 (862)
...........+. ..-.++..++...++. .=|||++.+..++..+ .....-+++..+||..|
T Consensus 588 ~~~~~~~~~~~~~~-~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL-----~~~p~lLLLDEPT~~LD 659 (718)
T PLN03073 588 SSNPLLYMMRCFPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT-----FKKPHILLLDEPSNHLD 659 (718)
T ss_pred chhHHHHHHHhcCC-CCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHH-----hcCCCEEEEcCCCCCCC
Confidence 1111111111111 1123344444333332 1299999999998877 23334455557776644
No 161
>PRK04132 replication factor C small subunit; Provisional
Probab=98.77 E-value=4.8e-08 Score=119.31 Aligned_cols=171 Identities=22% Similarity=0.253 Sum_probs=123.8
Q ss_pred EEEEC--CCCCchhHHHHHHHhhc-----cCceeeeecccchhhhcccchhhHHHHHHHHHhcC------CceeEhHHHH
Q 002961 432 ILLCG--PPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNA------PSVVFIDELD 498 (862)
Q Consensus 432 vlL~G--pnGtGKTtLakaLA~~l-----~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~------p~iL~iDEid 498 (862)
-++.| |++.||||++++||.++ +.+++++++++.. +...++.+...+.... ..|++|||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 45678 99999999999999987 4578888887632 2234555555443322 2599999999
Q ss_pred HhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHH
Q 002961 499 AVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH 578 (862)
Q Consensus 499 ~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~ 578 (862)
.+... ..+.|+..|+... .++.+|++||++..+.+++++ |+ ..+.|++|+.++....+...
T Consensus 641 ~Lt~~--------------AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 641 ALTQD--------------AQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred cCCHH--------------HHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 98643 6788888888654 477899999999999999999 54 38899999999988888877
Q ss_pred HccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 002961 579 ARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 633 (862)
Q Consensus 579 l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al 633 (862)
+....+. ++..+..++..+.|..+..| ++++.++. ....||.+++..+.
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~GDlR~AI-n~Lq~~~~-----~~~~It~~~V~~~~ 751 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEGDMRRAI-NILQAAAA-----LDDKITDENVFLVA 751 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCCCHHHHH-HHHHHHHH-----hcCCCCHHHHHHHh
Confidence 6644332 45567888888887554444 55554432 12358888887654
No 162
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.76 E-value=6.4e-08 Score=111.09 Aligned_cols=191 Identities=18% Similarity=0.242 Sum_probs=114.2
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccC--ceeeeecc-cchhhhcccc-hhhH--HHHHHHHHhc---CCceeEhHHH
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISAS-QFVEIYVGVG-ASRV--RSLYQEAKDN---APSVVFIDEL 497 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~--~~~~i~~~-~~~~~~~gq~-~~~l--~~~f~~a~~~---~p~iL~iDEi 497 (862)
-.+..|+|.||||||||+++++|+...+. +|..+.+. ......+|.. .... ..-|...... ...++|+|||
T Consensus 37 lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI 116 (498)
T PRK13531 37 LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEI 116 (498)
T ss_pred ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccc
Confidence 44567999999999999999999986542 33333222 0111222321 0000 1112111111 2348999999
Q ss_pred HHhhhhccCcCCCCchhHHHHHHHHHHhhcccc--C------CCcEEEEEecCCCCC---CCccccCCCCccccccCCCC
Q 002961 498 DAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--G------RGNVITIASTNRPDI---LDPALVRPGRFDRKIFIPKP 566 (862)
Q Consensus 498 d~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~--~------~~~vlvI~tTN~~~~---Ld~aLlrpgRfd~~I~~~~P 566 (862)
..+.+. +++.||..|+.-. . -...++++|||.... ..+++.. ||-..+.+|+|
T Consensus 117 ~rasp~--------------~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l 180 (498)
T PRK13531 117 WKAGPA--------------ILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKV 180 (498)
T ss_pred ccCCHH--------------HHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCC
Confidence 876554 7888888884321 1 112355566675322 3348888 99888999999
Q ss_pred C-HHhHHHHHHHHHcc--CCC-----CCccc--------------------HHHHHhh---c---CCCCHHHHHHHHHHH
Q 002961 567 G-LIGRMEILKVHARK--KPM-----ADDVD--------------------YLAVASM---T---DGMVGAELANIVEVA 612 (862)
Q Consensus 567 ~-~~~R~~Il~~~l~~--~~~-----~~~~d--------------------l~~lA~~---t---~G~s~adI~~lv~~A 612 (862)
+ .++-.+|+...... ... ....+ +..++.. + ...|++--..+++.+
T Consensus 181 ~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~a 260 (498)
T PRK13531 181 QDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLL 260 (498)
T ss_pred CchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHH
Confidence 7 45557777653221 101 00000 1122221 2 237888888999999
Q ss_pred HHHHHHhCCcccCHHHHHHHHH
Q 002961 613 AINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 613 ~~~A~~~~~~~It~edl~~Al~ 634 (862)
...|...|+..|+.+|+. .+.
T Consensus 261 kA~A~l~GR~~V~p~Dv~-ll~ 281 (498)
T PRK13531 261 QASAFFSGRDAIAPIDLI-LLK 281 (498)
T ss_pred HHHHHHCCCCCCCHHHHH-HhH
Confidence 999999999999999999 544
No 163
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=5.2e-08 Score=110.15 Aligned_cols=211 Identities=14% Similarity=0.118 Sum_probs=128.1
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhhhhhHhhccccCChhhhhhcc--
Q 002961 322 VIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEG----------LEGADDEIEQGEAEQNPHLKMAMQ-- 389 (862)
Q Consensus 322 l~~Y~GnYs~y~~~ke~~e~~~~~~k~~e~~~~~i~~le~~l~~----------~e~~~e~i~~~~~~~~~~l~~~~~-- 389 (862)
+..|+|||+.|.+.+. ++..+++++++.+......++..+.. ++.++..+.+......+.+...+.
T Consensus 273 L~~YkGN~~~Fvk~k~--E~~~n~qrefe~q~~~R~h~q~fid~FrYna~ra~svqSRIk~L~kl~~lk~~~~~~~~~~~ 350 (582)
T KOG0062|consen 273 LDYYKGNYSQFVKTKP--EAKKNQQREFEVQMKYRAHLQVFIDKFRYNAARASSVQSRIKMLGKLPALKSTLIEVLIGFL 350 (582)
T ss_pred hhhhcCcHHHHHHhhH--HhhhhhhhhcchHHHHHHHHHHHHHHhccCcccchhHHHHHHHhccCCCCCccceeccccee
Confidence 3449999999999999 56667777776665555555552221 223333222211111111111111
Q ss_pred cccccchhhhcccCCCccccccCcccccccc----c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 390 FMKSGARVRRAYGKGLPQYLERGVDVKFSDM----Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 390 ~~~~~~~V~~~~~i~~~~l~~~~~s~~~~~~----~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++..+.+ ...+.+.+.++.+.|... + .+++.....++.++|+||.||||+++++.+++.+..+.+...
T Consensus 351 fP~~~e~------~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~ 424 (582)
T KOG0062|consen 351 FPTEGEV------LSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRH 424 (582)
T ss_pred cCCCCCc------CCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeec
Confidence 1112222 223345566666655431 1 245556667899999999999999999999988766655443
Q ss_pred cch-hhhcccch----hhHHHHHHHHHhcCCceeEhHHHHHhhhhccCcCC---------CCchhHHHHHHHHHHhhccc
Q 002961 464 QFV-EIYVGVGA----SRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKG---------SGGQERDATLNQLLVCLDGF 529 (862)
Q Consensus 464 ~~~-~~~~gq~~----~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~---------Sgge~~r~~l~~LL~~Ld~~ 529 (862)
.-. -.|+.|+. ......++......|+. .-.|++.-++.++..++ |||++.+.+++.+. +
T Consensus 425 ~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~-~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~-----~ 498 (582)
T KOG0062|consen 425 PRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK-TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACT-----W 498 (582)
T ss_pred ccceecchhHhhhhHHHHHhHHHHHHHHhCCCC-CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHh-----c
Confidence 322 22443332 22245566666677774 66778887777776555 89999999999886 4
Q ss_pred cCCCcEEEEEecCCCCC
Q 002961 530 EGRGNVITIASTNRPDI 546 (862)
Q Consensus 530 ~~~~~vlvI~tTN~~~~ 546 (862)
..+.-+++..+||+.|.
T Consensus 499 ~~PhlLVLDEPTNhLD~ 515 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDR 515 (582)
T ss_pred CCCcEEEecCCCccccH
Confidence 44445666799999764
No 164
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.75 E-value=5e-08 Score=113.85 Aligned_cols=167 Identities=28% Similarity=0.379 Sum_probs=105.6
Q ss_pred ccCCe-EEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHH--------hcCCceeEhHHH
Q 002961 427 RIPGG-ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAK--------DNAPSVVFIDEL 497 (862)
Q Consensus 427 ~~~~~-vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~--------~~~p~iL~iDEi 497 (862)
+++.. ++|+||||.||||||+.||..+|..+++|+.++-.+ ...+...+..+. ...|..|++|||
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEI 396 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEI 396 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecc
Confidence 44444 679999999999999999999999999999987332 222322222221 135777999999
Q ss_pred HHhhhhccCcCCCCchhHHHHHHHHHHhhcc-------ccC---------CC---cEEEEEecCCCCCCCccccCCCCcc
Q 002961 498 DAVGRERGLIKGSGGQERDATLNQLLVCLDG-------FEG---------RG---NVITIASTNRPDILDPALVRPGRFD 558 (862)
Q Consensus 498 d~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~-------~~~---------~~---~vlvI~tTN~~~~Ld~aLlrpgRfd 558 (862)
|.... ..+..++..+.. -+. .. .--|||.||.... |+|+.---|-
T Consensus 397 DGa~~--------------~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A 460 (877)
T KOG1969|consen 397 DGAPR--------------AAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFA 460 (877)
T ss_pred cCCcH--------------HHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccce
Confidence 86432 245555555441 000 01 1257888886554 6664222477
Q ss_pred ccccCCCCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Q 002961 559 RKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 619 (862)
Q Consensus 559 ~~I~~~~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~ 619 (862)
.+|.|.+|......+-|+..+...++. +...+..|+..+ -.||++.+|.....+...
T Consensus 461 ~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~----~~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 461 EIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELT----QNDIRSCINTLQFLASNV 518 (877)
T ss_pred EEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHh----cchHHHHHHHHHHHHHhc
Confidence 899999998877776666555444332 223344555555 458888888777666543
No 165
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=4.9e-08 Score=108.61 Aligned_cols=152 Identities=22% Similarity=0.342 Sum_probs=101.0
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCc--eeeeecccc-----------hhh-hc-----c--cchhhHHHHHHHHH
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN--FFSISASQF-----------VEI-YV-----G--VGASRVRSLYQEAK 485 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~--~~~i~~~~~-----------~~~-~~-----g--q~~~~l~~~f~~a~ 485 (862)
+.+..++|+||+|+|||++++.+|..+... ...-.|+.. .+. ++ + -..+.++.+.+.+.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~ 99 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVV 99 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHh
Confidence 556789999999999999999999876331 100111110 000 01 0 12234566665554
Q ss_pred h----cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccc
Q 002961 486 D----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKI 561 (862)
Q Consensus 486 ~----~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I 561 (862)
. ....|++||++|.+... ..|.||..|+.- +.++++|.+|+.++.+.|++++ |.. .+
T Consensus 100 ~~~~~~~~kv~iI~~a~~m~~~--------------aaNaLLK~LEEP--p~~~~fiL~t~~~~~ll~TI~S--Rc~-~~ 160 (328)
T PRK05707 100 QTAQLGGRKVVLIEPAEAMNRN--------------AANALLKSLEEP--SGDTVLLLISHQPSRLLPTIKS--RCQ-QQ 160 (328)
T ss_pred hccccCCCeEEEECChhhCCHH--------------HHHHHHHHHhCC--CCCeEEEEEECChhhCcHHHHh--hce-ee
Confidence 3 23558899999998654 789999999864 4578888999999999999999 554 69
Q ss_pred cCCCCCHHhHHHHHHHHHccCCCCCcccHHHHHhhcCCC
Q 002961 562 FIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGM 600 (862)
Q Consensus 562 ~~~~P~~~~R~~Il~~~l~~~~~~~~~dl~~lA~~t~G~ 600 (862)
.|++|+.++....+...... ..+.+...++....|.
T Consensus 161 ~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gs 196 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGS 196 (328)
T ss_pred eCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCC
Confidence 99999999888887755311 1223334455555553
No 166
>PHA02244 ATPase-like protein
Probab=98.74 E-value=5.4e-08 Score=108.24 Aligned_cols=129 Identities=20% Similarity=0.231 Sum_probs=82.8
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhh---hcccchhhH-HHHHHHHHhcCCceeEhHHHHHhhh
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI---YVGVGASRV-RSLYQEAKDNAPSVVFIDELDAVGR 502 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~---~~gq~~~~l-~~~f~~a~~~~p~iL~iDEid~l~~ 502 (862)
..+..|+|+||+|||||+|+++|+..++.+++.++...-... +........ ..++..+ ..+++++|||++.+..
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~--~~GgvLiLDEId~a~p 194 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF--KKGGLFFIDEIDASIP 194 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh--hcCCEEEEeCcCcCCH
Confidence 445679999999999999999999999999988873210000 111111101 1222222 2457999999987754
Q ss_pred hccCcCCCCchhHHHHHHHHHHhhcc---------ccCCCcEEEEEecCCC-----------CCCCccccCCCCcccccc
Q 002961 503 ERGLIKGSGGQERDATLNQLLVCLDG---------FEGRGNVITIASTNRP-----------DILDPALVRPGRFDRKIF 562 (862)
Q Consensus 503 ~~~~~~~Sgge~~r~~l~~LL~~Ld~---------~~~~~~vlvI~tTN~~-----------~~Ld~aLlrpgRfd~~I~ 562 (862)
. ++..|...++. +....++.+|+|+|.. ..+++++++ ||- +|.
T Consensus 195 ~--------------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~ 257 (383)
T PHA02244 195 E--------------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIE 257 (383)
T ss_pred H--------------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-Eee
Confidence 3 33344444431 2233578999999973 457899999 995 799
Q ss_pred CCCCCHHhHHHHH
Q 002961 563 IPKPGLIGRMEIL 575 (862)
Q Consensus 563 ~~~P~~~~R~~Il 575 (862)
|..|+. ....|.
T Consensus 258 ~dyp~~-~E~~i~ 269 (383)
T PHA02244 258 FDYDEK-IEHLIS 269 (383)
T ss_pred CCCCcH-HHHHHh
Confidence 999973 333444
No 167
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=1.1e-07 Score=114.03 Aligned_cols=183 Identities=20% Similarity=0.284 Sum_probs=117.8
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceeee---ecc------cchhh------hc-c---cchhhHHHHHHHHHhc
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI---SAS------QFVEI------YV-G---VGASRVRSLYQEAKDN 487 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i---~~~------~~~~~------~~-g---q~~~~l~~~f~~a~~~ 487 (862)
+.+..++|+||+|+||||+++++|..+.+..... .|+ .+... .+ + .....++.+.+.+...
T Consensus 37 ~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~ 116 (614)
T PRK14971 37 KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIP 116 (614)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhC
Confidence 3456689999999999999999999775321100 011 00000 01 1 1123456666555432
Q ss_pred ----CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccC
Q 002961 488 ----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFI 563 (862)
Q Consensus 488 ----~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~ 563 (862)
...|++|||++.+... ..+.|+..|+... ..+++|.+|+....+-++|++ |.. .+.|
T Consensus 117 P~~~~~KVvIIdea~~Ls~~--------------a~naLLK~LEepp--~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f 177 (614)
T PRK14971 117 PQIGKYKIYIIDEVHMLSQA--------------AFNAFLKTLEEPP--SYAIFILATTEKHKILPTILS--RCQ-IFDF 177 (614)
T ss_pred cccCCcEEEEEECcccCCHH--------------HHHHHHHHHhCCC--CCeEEEEEeCCchhchHHHHh--hhh-eeec
Confidence 2348999999888543 6788998888653 356677777777888899998 543 7999
Q ss_pred CCCCHHhHHHHHHHHHccCCCCC-cccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 002961 564 PKPGLIGRMEILKVHARKKPMAD-DVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 633 (862)
Q Consensus 564 ~~P~~~~R~~Il~~~l~~~~~~~-~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al 633 (862)
.+++.++....+...+....+.- +..+..++..+.| +.+++.+++...... .+.. |+.+++.+.+
T Consensus 178 ~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dlr~al~~Lekl~~y---~~~~-It~~~V~~~l 243 (614)
T PRK14971 178 NRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GMRDALSIFDQVVSF---TGGN-ITYKSVIENL 243 (614)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh---ccCC-ccHHHHHHHh
Confidence 99999999988888776655442 3346677777754 566666666654432 2332 7777666554
No 168
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.73 E-value=7.5e-08 Score=112.50 Aligned_cols=192 Identities=22% Similarity=0.229 Sum_probs=117.0
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhccCceeee--eccc------------------chhh--------hcccchh
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI--SASQ------------------FVEI--------YVGVGAS 475 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i--~~~~------------------~~~~--------~~gq~~~ 475 (862)
+.+..+..++|+||||+|||||++.|++.+.+..+.. .... |... .+|.+..
T Consensus 206 ~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~ 285 (499)
T TIGR00368 206 IAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPI 285 (499)
T ss_pred hhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCccc
Confidence 4455667899999999999999999998654322111 1000 0000 1111000
Q ss_pred hHHHHHHHHHhcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc-----------CCCcEEEEEecCCC
Q 002961 476 RVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRP 544 (862)
Q Consensus 476 ~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~-----------~~~~vlvI~tTN~~ 544 (862)
.-.. .+.....++|||||++.+... .+..|+..|+... -..++.+|+++|.-
T Consensus 286 ~~pG---~i~lA~~GvLfLDEi~e~~~~--------------~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npc 348 (499)
T TIGR00368 286 PLPG---EISLAHNGVLFLDELPEFKRS--------------VLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPC 348 (499)
T ss_pred cchh---hhhccCCCeEecCChhhCCHH--------------HHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCc
Confidence 0000 112233469999999987543 6677777665421 12468999999862
Q ss_pred ------C-----------------CCCccccCCCCccccccCCCCCHHh-------------HHHHHHH------HHccC
Q 002961 545 ------D-----------------ILDPALVRPGRFDRKIFIPKPGLIG-------------RMEILKV------HARKK 582 (862)
Q Consensus 545 ------~-----------------~Ld~aLlrpgRfd~~I~~~~P~~~~-------------R~~Il~~------~l~~~ 582 (862)
+ .+...|++ |||.++.++.++..+ |..+.+. .+...
T Consensus 349 pcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~ 426 (499)
T TIGR00368 349 PCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKF 426 (499)
T ss_pred ccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 47778888 999999999765432 2223221 11111
Q ss_pred ---CCCCc----------------ccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 583 ---PMADD----------------VDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 583 ---~~~~~----------------~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
..... .++..-+....++|.+....+++.|...|..++...|+.+|+.+|+.
T Consensus 427 ~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 427 ANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred CCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 11100 11111122334589999999999999999999999999999999974
No 169
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.73 E-value=9.8e-09 Score=99.62 Aligned_cols=109 Identities=32% Similarity=0.447 Sum_probs=69.3
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceeeeecccchhh--hcccch------hhH-HHHHHHHHhcCCceeEhHHHHHhh
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI--YVGVGA------SRV-RSLYQEAKDNAPSVVFIDELDAVG 501 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~--~~gq~~------~~l-~~~f~~a~~~~p~iL~iDEid~l~ 501 (862)
+|+|+||+|+|||+|++.+|..++.++..+.++...+. ++|.-. ... ..+...+. .+++++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccCC
Confidence 47999999999999999999999999888877664332 111100 000 11111111 46799999998765
Q ss_pred hhccCcCCCCchhHHHHHHHHHHhhcccc-----------CCC------cEEEEEecCCCC----CCCccccCCCCc
Q 002961 502 RERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRG------NVITIASTNRPD----ILDPALVRPGRF 557 (862)
Q Consensus 502 ~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~-----------~~~------~vlvI~tTN~~~----~Ld~aLlrpgRf 557 (862)
.. ++..|+..++.-. ... ++.+|+|+|..+ .++++|++ ||
T Consensus 79 ~~--------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 PE--------------VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp HH--------------HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred HH--------------HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 33 5555555555310 111 489999999988 79999998 76
No 170
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.71 E-value=1.2e-07 Score=110.53 Aligned_cols=196 Identities=21% Similarity=0.232 Sum_probs=119.5
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeee--cccch--------------hhhcccchh-hHHHHH----
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS--ASQFV--------------EIYVGVGAS-RVRSLY---- 481 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~--~~~~~--------------~~~~gq~~~-~l~~~f---- 481 (862)
.+....+..++|+||||+|||+|++.|++.+.+..+... ...+. ..|..-+.. ....++
T Consensus 204 ~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~ 283 (506)
T PRK09862 204 EITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGA 283 (506)
T ss_pred heeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCc
Confidence 455566778999999999999999999997754432211 11100 001000000 000000
Q ss_pred ----HHHHhcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc-----------CCCcEEEEEecCCCC-
Q 002961 482 ----QEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD- 545 (862)
Q Consensus 482 ----~~a~~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~-----------~~~~vlvI~tTN~~~- 545 (862)
..+.....+++|+||++.+... .+..|++.|+.-. -..++.+|+|+|...
T Consensus 284 ~~~pG~l~~A~gGvLfLDEi~e~~~~--------------~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pc 349 (506)
T PRK09862 284 IPGPGEISLAHNGVLFLDELPEFERR--------------TLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPT 349 (506)
T ss_pred eehhhHhhhccCCEEecCCchhCCHH--------------HHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccc
Confidence 1122333469999999876543 6777777764321 134689999998752
Q ss_pred --------------------CCCccccCCCCccccccCCCCCHH----------hHHHHHHHH--------Hc----cCC
Q 002961 546 --------------------ILDPALVRPGRFDRKIFIPKPGLI----------GRMEILKVH--------AR----KKP 583 (862)
Q Consensus 546 --------------------~Ld~aLlrpgRfd~~I~~~~P~~~----------~R~~Il~~~--------l~----~~~ 583 (862)
.++.++++ |||.++.+++|+.+ ....|-+.. .+ +..
T Consensus 350 G~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~ 427 (506)
T PRK09862 350 GHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAW 427 (506)
T ss_pred eecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcc
Confidence 36678888 99999999987432 111121100 00 000
Q ss_pred CCC---------c---ccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 584 MAD---------D---VDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 584 ~~~---------~---~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
+.. . ..+..-+....|.|.+....+++.|...|..+++..|+.+|+.+|+.
T Consensus 428 l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 428 LDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVS 490 (506)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 000 0 01111122445789999999999999999999999999999999986
No 171
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.71 E-value=1.5e-07 Score=99.03 Aligned_cols=162 Identities=23% Similarity=0.348 Sum_probs=105.5
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhcccchhhHHHHHHHHHhc-CCceeEhHHHHHhhh
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDN-APSVVFIDELDAVGR 502 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~-~p~iL~iDEid~l~~ 502 (862)
.+..+++|+|+.|||||+++|++.... +..++.+.-.++ ..+..+++.++.. ..-|||+|++. |-
T Consensus 50 ~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L---------~~l~~l~~~l~~~~~kFIlf~DDLs-Fe- 118 (249)
T PF05673_consen 50 LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL---------GDLPELLDLLRDRPYKFILFCDDLS-FE- 118 (249)
T ss_pred CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh---------ccHHHHHHHHhcCCCCEEEEecCCC-CC-
Confidence 455679999999999999999999876 444555543332 2345566666543 34589999862 11
Q ss_pred hccCcCCCCchhHHHHHHHHHHhhccc--cCCCcEEEEEecCCCCCCCccccC----------C-----------CCccc
Q 002961 503 ERGLIKGSGGQERDATLNQLLVCLDGF--EGRGNVITIASTNRPDILDPALVR----------P-----------GRFDR 559 (862)
Q Consensus 503 ~~~~~~~Sgge~~r~~l~~LL~~Ld~~--~~~~~vlvI~tTN~~~~Ld~aLlr----------p-----------gRfd~ 559 (862)
.++. ....|-..||+- ..+.+|++.+|+|+-..++..+.. + -||..
T Consensus 119 --------~~d~---~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL 187 (249)
T PF05673_consen 119 --------EGDT---EYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGL 187 (249)
T ss_pred --------CCcH---HHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCc
Confidence 1111 234455556653 345789999999986555432211 1 28999
Q ss_pred cccCCCCCHHhHHHHHHHHHccCCCCCc-ccH----HHHHhhcCCCCHHHHHHHHH
Q 002961 560 KIFIPKPGLIGRMEILKVHARKKPMADD-VDY----LAVASMTDGMVGAELANIVE 610 (862)
Q Consensus 560 ~I~~~~P~~~~R~~Il~~~l~~~~~~~~-~dl----~~lA~~t~G~s~adI~~lv~ 610 (862)
.|.|.+|+.++-.+|++.++....+.-+ .++ ...|..-.|.||+...+.++
T Consensus 188 ~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 188 WLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTARQFID 243 (249)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999976655433 122 23344555677776665554
No 172
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.70 E-value=3.3e-07 Score=99.65 Aligned_cols=97 Identities=20% Similarity=0.234 Sum_probs=75.1
Q ss_pred EEEEecCC------------CCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCH
Q 002961 536 ITIASTNR------------PDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVG 602 (862)
Q Consensus 536 lvI~tTN~------------~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~ 602 (862)
++|.+||+ |.-+|..|+. |+- +|...+++.++..+|+++......+. ++..++.|+.....-|-
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rll-II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSL 398 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLD--RLL-IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSL 398 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhh--hee-EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhH
Confidence 66667764 4457777877 653 77888899999999999998765443 34456677777666677
Q ss_pred HHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 002961 603 AELANIVEVAAINMMRDGRTEITTDDLLQAAQI 635 (862)
Q Consensus 603 adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 635 (862)
+-..+|+.-|...|.++++..|..+|++.|...
T Consensus 399 RYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 399 RYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred HHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 777788888888999999999999999999764
No 173
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.60 E-value=8.4e-08 Score=105.94 Aligned_cols=128 Identities=31% Similarity=0.438 Sum_probs=87.7
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhcc------------------------CceeeeecccchhhhcccchhhHHHHHH
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAG------------------------VNFFSISASQFVEIYVGVGASRVRSLYQ 482 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~------------------------~~~~~i~~~~~~~~~~gq~~~~l~~~f~ 482 (862)
+.|..++|+||+|+||||++.++|+.+. +.+.+++.++.... +.....++.+.+
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~--~i~~~~vr~~~~ 99 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKI--DIIVEQVRELAE 99 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCC--cchHHHHHHHHH
Confidence 3445699999999999999999999875 45556655542211 011223344444
Q ss_pred HHHhc----CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCcc
Q 002961 483 EAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFD 558 (862)
Q Consensus 483 ~a~~~----~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd 558 (862)
..... ...+++|||+|.+... ..+.++..++.. ..+..+|.+||.+..+-+.+.++|+
T Consensus 100 ~~~~~~~~~~~kviiidead~mt~~--------------A~nallk~lEep--~~~~~~il~~n~~~~il~tI~SRc~-- 161 (325)
T COG0470 100 FLSESPLEGGYKVVIIDEADKLTED--------------AANALLKTLEEP--PKNTRFILITNDPSKILPTIRSRCQ-- 161 (325)
T ss_pred HhccCCCCCCceEEEeCcHHHHhHH--------------HHHHHHHHhccC--CCCeEEEEEcCChhhccchhhhcce--
Confidence 33322 3468999999999764 678888888754 4567888889999999999999443
Q ss_pred ccccCCCCCHHhHHHHH
Q 002961 559 RKIFIPKPGLIGRMEIL 575 (862)
Q Consensus 559 ~~I~~~~P~~~~R~~Il 575 (862)
.+.|++|+........
T Consensus 162 -~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 162 -RIRFKPPSRLEAIAWL 177 (325)
T ss_pred -eeecCCchHHHHHHHh
Confidence 7788776554444433
No 174
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.59 E-value=8.5e-07 Score=96.18 Aligned_cols=191 Identities=18% Similarity=0.279 Sum_probs=115.3
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhcc---------Cceeeeecccchhh---h------cc------cchhhH-HHHHHH
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAG---------VNFFSISASQFVEI---Y------VG------VGASRV-RSLYQE 483 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~---------~~~~~i~~~~~~~~---~------~g------q~~~~l-~~~f~~ 483 (862)
..+++|+|++|.|||++++..+.... .|++.+.+..-.+. | ++ ...... ..+...
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 35699999999999999999986432 24444433221110 1 01 111111 334566
Q ss_pred HHhcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCC--CCCccccCCCCccccc
Q 002961 484 AKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD--ILDPALVRPGRFDRKI 561 (862)
Q Consensus 484 a~~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~--~Ld~aLlrpgRfd~~I 561 (862)
++...+.+++|||++.++.. .....+.++|.|-..-+.+ .-.++.+||..-.. .-|+.+-+ ||+ .+
T Consensus 141 lr~~~vrmLIIDE~H~lLaG-------s~~~qr~~Ln~LK~L~NeL--~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~ 208 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAG-------SYRKQREFLNALKFLGNEL--QIPIVGVGTREAYRALRTDPQLAS--RFE-PF 208 (302)
T ss_pred HHHcCCcEEEeechHHHhcc-------cHHHHHHHHHHHHHHhhcc--CCCeEEeccHHHHHHhccCHHHHh--ccC-Cc
Confidence 67788889999999998642 1233444444433222212 12455556542222 24677877 998 67
Q ss_pred cCCCCCH-HhHHHHHHHHHccCCCC------CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHH
Q 002961 562 FIPKPGL-IGRMEILKVHARKKPMA------DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA 632 (862)
Q Consensus 562 ~~~~P~~-~~R~~Il~~~l~~~~~~------~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~A 632 (862)
.+|.... ++-..++..+-...++. ...-...+-..+.|.+| ++..+++.|+..|.+.|...||.+.+..+
T Consensus 209 ~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 209 ELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred cCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 7776644 33445665554433322 22222455567777665 58899999999999999999999998764
No 175
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=2.4e-07 Score=103.98 Aligned_cols=163 Identities=17% Similarity=0.157 Sum_probs=100.3
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccC-------ceeee-ecccc---hh--------h-hcc----c---------c
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGV-------NFFSI-SASQF---VE--------I-YVG----V---------G 473 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~-------~~~~i-~~~~~---~~--------~-~~g----q---------~ 473 (862)
+.|..++|+||.|+||||+++.+|..+.. +.+.. .++.. .. . ++. . .
T Consensus 43 rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~ 122 (351)
T PRK09112 43 KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAIT 122 (351)
T ss_pred CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCC
Confidence 45667999999999999999999987643 11100 11000 00 0 010 0 0
Q ss_pred hhhHHHHHHHHH----hcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCc
Q 002961 474 ASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 549 (862)
Q Consensus 474 ~~~l~~~f~~a~----~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~ 549 (862)
.+.++.+.+.+. .....|++|||+|.+... ..+.||..|+... .+.++|..|+.++.+.|
T Consensus 123 vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~--------------aanaLLk~LEEpp--~~~~fiLit~~~~~llp 186 (351)
T PRK09112 123 VDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN--------------AANAILKTLEEPP--ARALFILISHSSGRLLP 186 (351)
T ss_pred HHHHHHHHHHhhhccccCCceEEEEEchhhcCHH--------------HHHHHHHHHhcCC--CCceEEEEECChhhccH
Confidence 122333333332 233458999999998654 6788999998643 45566666677888889
Q ss_pred cccCCCCccccccCCCCCHHhHHHHHHHHHccCCCCCcccHHHHHhhcCCCCHHHHHHHHH
Q 002961 550 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVE 610 (862)
Q Consensus 550 aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~ 610 (862)
.+++ |+ ..+.|++|+.++...++........ .++.....++..+.| +++...++++
T Consensus 187 tIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~~s~G-~pr~Al~ll~ 242 (351)
T PRK09112 187 TIRS--RC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQRSKG-SVRKALLLLN 242 (351)
T ss_pred HHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHHHcCC-CHHHHHHHHh
Confidence 9998 65 4999999999999999987432222 112334556666655 3433334443
No 176
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=3.5e-07 Score=109.87 Aligned_cols=181 Identities=23% Similarity=0.377 Sum_probs=124.3
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc----------cCceeeeecccchhh--hcccchhhHHHHHHHHHhcCCceeEh
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFVEI--YVGVGASRVRSLYQEAKDNAPSVVFI 494 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l----------~~~~~~i~~~~~~~~--~~gq~~~~l~~~f~~a~~~~p~iL~i 494 (862)
+...+-+|+|+||+|||.++..||... +...+.++++.++.. |-|+...+++.+.+.+....+-||||
T Consensus 189 R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFI 268 (786)
T COG0542 189 RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFI 268 (786)
T ss_pred cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEE
Confidence 444557999999999999999888754 445667777776544 89999999999999999888889999
Q ss_pred HHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCC-----CCCCccccCCCCccccccCCCCCHH
Q 002961 495 DELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP-----DILDPALVRPGRFDRKIFIPKPGLI 569 (862)
Q Consensus 495 DEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~-----~~Ld~aLlrpgRfd~~I~~~~P~~~ 569 (862)
||++.+.+.... +|+ .-.+-|.|--. ..++.+-+|++|... =.-|++|-| ||. .|.+.-|+.+
T Consensus 269 DEiHtiVGAG~~---~G~--a~DAaNiLKPa----LARGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e 336 (786)
T COG0542 269 DEIHTIVGAGAT---EGG--AMDAANLLKPA----LARGELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVE 336 (786)
T ss_pred echhhhcCCCcc---ccc--ccchhhhhHHH----HhcCCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHH
Confidence 999999765321 121 11122222211 235678888888542 235899999 998 8999999999
Q ss_pred hHHHHHHHHHccCCCC-----CcccHHHHHh-----hcCCCCHHHHHHHHHHHHHHHHHh
Q 002961 570 GRMEILKVHARKKPMA-----DDVDYLAVAS-----MTDGMVGAELANIVEVAAINMMRD 619 (862)
Q Consensus 570 ~R~~Il~~~l~~~~~~-----~~~dl~~lA~-----~t~G~s~adI~~lv~~A~~~A~~~ 619 (862)
+-..||+-.-..+... .|..+.+.+. .++.+-|.....++.+|+......
T Consensus 337 ~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~ 396 (786)
T COG0542 337 DTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLE 396 (786)
T ss_pred HHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhc
Confidence 9999998655433211 2222333332 234456666668888887655443
No 177
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.57 E-value=6.7e-07 Score=100.00 Aligned_cols=188 Identities=24% Similarity=0.374 Sum_probs=114.1
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCceeeeec----c----------------------------cchhhhcccchhhH
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA----S----------------------------QFVEIYVGVGASRV 477 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~----~----------------------------~~~~~~~gq~~~~l 477 (862)
.+++|.|+.|+||||++++|+.-+....+.+.| . .++..-.+.+..++
T Consensus 39 ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrv 118 (423)
T COG1239 39 GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRL 118 (423)
T ss_pred ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhh
Confidence 679999999999999999999977433222211 0 00000111222211
Q ss_pred ------HHHHH-H--------HHhcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcc-----------ccC
Q 002961 478 ------RSLYQ-E--------AKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG-----------FEG 531 (862)
Q Consensus 478 ------~~~f~-~--------a~~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~-----------~~~ 531 (862)
..+.+ - +...+-+|+++||+..+... .++.||..+.. +..
T Consensus 119 vGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~--------------lvd~LLd~aaeG~n~vereGisi~h 184 (423)
T COG1239 119 VGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDH--------------LVDALLDVAAEGVNDVEREGISIRH 184 (423)
T ss_pred ccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHH--------------HHHHHHHHHHhCCceeeeCceeecc
Confidence 11111 0 11223468999999776543 66677766543 223
Q ss_pred CCcEEEEEecCCCC-CCCccccCCCCccccccCCCC-CHHhHHHHHHHHHccCCCCC-----------------------
Q 002961 532 RGNVITIASTNRPD-ILDPALVRPGRFDRKIFIPKP-GLIGRMEILKVHARKKPMAD----------------------- 586 (862)
Q Consensus 532 ~~~vlvI~tTN~~~-~Ld~aLlrpgRfd~~I~~~~P-~~~~R~~Il~~~l~~~~~~~----------------------- 586 (862)
..++++|+|+|+.. .|-|.|+. ||...|.+..| +.++|.+|++..+......+
T Consensus 185 pa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~ 262 (423)
T COG1239 185 PARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSL 262 (423)
T ss_pred CccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46799999999854 68899999 99999999877 67889999886654321110
Q ss_pred -------cccHHHHHh-----hcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 002961 587 -------DVDYLAVAS-----MTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 635 (862)
Q Consensus 587 -------~~dl~~lA~-----~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 635 (862)
+.....++. ...| ..+++ .+++.+...|...|+..++.+|+.+|+..
T Consensus 263 l~~V~l~~~~~~~ia~~~~~~~v~g-~radi-~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l 321 (423)
T COG1239 263 LSEVELDDDAETKIAELCARLAVDG-HRADI-VVVRAAKALAALRGRTEVEEEDIREAAEL 321 (423)
T ss_pred cccccCcHHHHHHHHHHHHHhccCC-Cchhh-HHHHHHHHHHHhcCceeeehhhHHHHHhh
Confidence 000011111 1112 23444 45566666777788888888888888763
No 178
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=6.6e-07 Score=106.24 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=47.5
Q ss_pred ccccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 406 PQYLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 406 ~~l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
..+.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|...+..|.+.+.
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~ 379 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWS 379 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 347788888888642 2 378888888999999999999999999999988777877654
No 179
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=3.3e-07 Score=103.47 Aligned_cols=154 Identities=22% Similarity=0.253 Sum_probs=98.2
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCce----e-------eee-ccc---ch--------hh-hc-----cc-----
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNF----F-------SIS-ASQ---FV--------EI-YV-----GV----- 472 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~----~-------~i~-~~~---~~--------~~-~~-----gq----- 472 (862)
+.+..++|+||+|+||++++..+|..+-..- . .+. ++. .. +. ++ +.
T Consensus 39 rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~ 118 (365)
T PRK07471 39 RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLR 118 (365)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEeccccccccccc
Confidence 5677899999999999999999998762210 0 000 100 00 00 01 11
Q ss_pred ---chhhHHHHHHHHH----hcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCC
Q 002961 473 ---GASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD 545 (862)
Q Consensus 473 ---~~~~l~~~f~~a~----~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~ 545 (862)
..+.++.+.+.+. ...+.|++|||+|.+... ..+.||..++.. ..+.++|.+|+.++
T Consensus 119 ~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~--------------aanaLLK~LEep--p~~~~~IL~t~~~~ 182 (365)
T PRK07471 119 TVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNAN--------------AANALLKVLEEP--PARSLFLLVSHAPA 182 (365)
T ss_pred ccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHH--------------HHHHHHHHHhcC--CCCeEEEEEECCch
Confidence 0122344443332 245679999999988544 778899888854 34567777888888
Q ss_pred CCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCCCCCcccHHHHHhhcCCCCH
Q 002961 546 ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVG 602 (862)
Q Consensus 546 ~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~~~~~~dl~~lA~~t~G~s~ 602 (862)
.+.+.+++ |+. .+.|++|+.++..+++...... ..+..+..++..+.|..+
T Consensus 183 ~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~---~~~~~~~~l~~~s~Gsp~ 233 (365)
T PRK07471 183 RLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPD---LPDDPRAALAALAEGSVG 233 (365)
T ss_pred hchHHhhc--cce-EEECCCCCHHHHHHHHHHhccc---CCHHHHHHHHHHcCCCHH
Confidence 99999988 543 8999999999999888876421 122223456666666444
No 180
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.56 E-value=8.7e-08 Score=96.94 Aligned_cols=114 Identities=32% Similarity=0.349 Sum_probs=72.6
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccC----ceeeeecccchhhh-cccchhh-HHHHHHHHHhcCCceeEhHHHHHhhhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGV----NFFSISASQFVEIY-VGVGASR-VRSLYQEAKDNAPSVVFIDELDAVGRE 503 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~----~~~~i~~~~~~~~~-~gq~~~~-l~~~f~~a~~~~p~iL~iDEid~l~~~ 503 (862)
..++|+||+|+|||.|+++|+..+.. ++..++++.+.... ....... +...-..+......|+++||||+....
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~~ 83 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHPS 83 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhcccc
Confidence 35899999999999999999999985 89999988876510 0000010 110000111112249999999999775
Q ss_pred ccCcCCCCchhHHHHHHHHHHhhccc---------cCCCcEEEEEecCCCCC
Q 002961 504 RGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRPDI 546 (862)
Q Consensus 504 ~~~~~~Sgge~~r~~l~~LL~~Ld~~---------~~~~~vlvI~tTN~~~~ 546 (862)
.+...+.....+++.||..|++- .+.+++++|+|+|.-..
T Consensus 84 ---~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 84 ---NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp ---TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred ---ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 12233334445778888888642 12357999999987543
No 181
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.56 E-value=1e-07 Score=100.08 Aligned_cols=55 Identities=22% Similarity=0.248 Sum_probs=41.6
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|+.. + .++.+..++-|.|+||+|||||||+++|||-..+..|.+.+
T Consensus 4 l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~ 62 (248)
T COG1116 4 LEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLL 62 (248)
T ss_pred EEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 3445556666541 1 26777888889999999999999999999988777776543
No 182
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.55 E-value=2e-07 Score=106.25 Aligned_cols=133 Identities=29% Similarity=0.356 Sum_probs=74.1
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCc--eeeee---c------ccchhhhccc--c----hhhHHHHHHHHHhc--C
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVN--FFSIS---A------SQFVEIYVGV--G----ASRVRSLYQEAKDN--A 488 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~--~~~i~---~------~~~~~~~~gq--~----~~~l~~~f~~a~~~--~ 488 (862)
.+..++|+||||||||++++.++..+... +..+. . .+++..+... + ...+..+...+... .
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~ 272 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEK 272 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccC
Confidence 46789999999999999999999876321 11111 1 1122111111 1 11223444555443 4
Q ss_pred CceeEhHHHHHhhhhccCcC-----CC--CchhHHHHHHHHHHh--hccccCCCcEEEEEecCCCC----CCCccccCCC
Q 002961 489 PSVVFIDELDAVGRERGLIK-----GS--GGQERDATLNQLLVC--LDGFEGRGNVITIASTNRPD----ILDPALVRPG 555 (862)
Q Consensus 489 p~iL~iDEid~l~~~~~~~~-----~S--gge~~r~~l~~LL~~--Ld~~~~~~~vlvI~tTN~~~----~Ld~aLlrpg 555 (862)
|.+++|||++.......++. +. .++.....+ .... .+.+.-..++.||+|+|..| .+|.||+|
T Consensus 273 ~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l--~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR-- 348 (459)
T PRK11331 273 KYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPL--TYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR-- 348 (459)
T ss_pred CcEEEEehhhccCHHHhhhhhhhhccccccccccceee--eccccccccccCCCCeEEEEecCccccchhhccHHHHh--
Confidence 78999999987643321110 00 000000000 0000 12244567899999999988 69999999
Q ss_pred CccccccCCC
Q 002961 556 RFDRKIFIPK 565 (862)
Q Consensus 556 Rfd~~I~~~~ 565 (862)
||. .|.+.+
T Consensus 349 RF~-fi~i~p 357 (459)
T PRK11331 349 RFS-FIDIEP 357 (459)
T ss_pred hhh-eEEecC
Confidence 986 455543
No 183
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=3.9e-07 Score=101.75 Aligned_cols=153 Identities=19% Similarity=0.215 Sum_probs=99.8
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCc--eeeeecccch-----------hh-hc--c-----cchhhHHHHHHHHH
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN--FFSISASQFV-----------EI-YV--G-----VGASRVRSLYQEAK 485 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~--~~~i~~~~~~-----------~~-~~--g-----q~~~~l~~~f~~a~ 485 (862)
+.+..++|+||.|+||++++.++|..+-.. ...-.|+... +. ++ . -..+.++.+.+.+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 667789999999999999999999876221 1111121100 00 01 0 11223455555443
Q ss_pred h----cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccc
Q 002961 486 D----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKI 561 (862)
Q Consensus 486 ~----~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I 561 (862)
. ....|++||++|.+... ..|.||..|+. ++.++++|..|+.++.|.|.++| |.. .+
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~ 162 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLTDA--------------AANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR-LH 162 (334)
T ss_pred hccccCCceEEEEcchHhhCHH--------------HHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-cc
Confidence 2 33458999999998654 78999999995 45678999999999999999999 554 68
Q ss_pred cCCCCCHHhHHHHHHHHHccCCCCCcccHHHHHhhcCCCCH
Q 002961 562 FIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVG 602 (862)
Q Consensus 562 ~~~~P~~~~R~~Il~~~l~~~~~~~~~dl~~lA~~t~G~s~ 602 (862)
.|++|+.++....+.... ..+ ..+...++..+.|..+
T Consensus 163 ~~~~~~~~~~~~~L~~~~---~~~-~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 163 YLAPPPEQYALTWLSREV---TMS-QDALLAALRLSAGAPG 199 (334)
T ss_pred cCCCCCHHHHHHHHHHcc---CCC-HHHHHHHHHHcCCCHH
Confidence 999999888777765321 222 2223445556655433
No 184
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=4.9e-07 Score=100.22 Aligned_cols=133 Identities=19% Similarity=0.258 Sum_probs=92.1
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCce--eeeecccc-----------hhh-hc----c--cchhhHHHHHHHHHh
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNF--FSISASQF-----------VEI-YV----G--VGASRVRSLYQEAKD 486 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~--~~i~~~~~-----------~~~-~~----g--q~~~~l~~~f~~a~~ 486 (862)
+.+..++|+||.|+||+++++.+|..+-..- ..-.|+.. .+. ++ + -+.+.++.+.+.+..
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQ 101 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhh
Confidence 5567899999999999999999998763211 00111110 000 01 1 122344555555433
Q ss_pred ----cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCcccccc
Q 002961 487 ----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIF 562 (862)
Q Consensus 487 ----~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~ 562 (862)
....|++||++|.+... ..|.||..|+. ++.++++|.+|+.++.+.|+++| |.. .+.
T Consensus 102 ~~~~g~~KV~iI~~a~~m~~~--------------AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC~-~~~ 162 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERLTEA--------------AANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RCQ-TWL 162 (325)
T ss_pred ccccCCceEEEEechhhhCHH--------------HHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hce-EEe
Confidence 23458999999998654 78999999995 45678888899999999999999 443 789
Q ss_pred CCCCCHHhHHHHHHHH
Q 002961 563 IPKPGLIGRMEILKVH 578 (862)
Q Consensus 563 ~~~P~~~~R~~Il~~~ 578 (862)
|++|+.++..+.|...
T Consensus 163 ~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 163 IHPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999998888777654
No 185
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=4.6e-07 Score=100.46 Aligned_cols=146 Identities=15% Similarity=0.235 Sum_probs=96.8
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccC--------ceeeeecccchhhhccc--chhhHHHHHHHHHh----cCCcee
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGV--------NFFSISASQFVEIYVGV--GASRVRSLYQEAKD----NAPSVV 492 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~--------~~~~i~~~~~~~~~~gq--~~~~l~~~f~~a~~----~~p~iL 492 (862)
+.+..++|+||.|+|||++++.++..+-+ ++..+... -+. ....++.+.+.+.. ....|+
T Consensus 24 ~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~------~~~~i~v~~ir~~~~~~~~~p~~~~~kv~ 97 (313)
T PRK05564 24 RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI------NKKSIGVDDIRNIIEEVNKKPYEGDKKVI 97 (313)
T ss_pred CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc------cCCCCCHHHHHHHHHHHhcCcccCCceEE
Confidence 44567899999999999999999986522 22222210 111 12335555554432 234589
Q ss_pred EhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHH
Q 002961 493 FIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRM 572 (862)
Q Consensus 493 ~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~ 572 (862)
+||++|.+... ..|.||..|+.. +.++++|.+|+.++.+.|++++ |.. ++.|++|+.++..
T Consensus 98 iI~~ad~m~~~--------------a~naLLK~LEep--p~~t~~il~~~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~ 158 (313)
T PRK05564 98 IIYNSEKMTEQ--------------AQNAFLKTIEEP--PKGVFIILLCENLEQILDTIKS--RCQ-IYKLNRLSKEEIE 158 (313)
T ss_pred EEechhhcCHH--------------HHHHHHHHhcCC--CCCeEEEEEeCChHhCcHHHHh--hce-eeeCCCcCHHHHH
Confidence 99999888543 678999999853 4566666666778999999999 443 8999999999888
Q ss_pred HHHHHHHccCCCCCcccHHHHHhhcCCC
Q 002961 573 EILKVHARKKPMADDVDYLAVASMTDGM 600 (862)
Q Consensus 573 ~Il~~~l~~~~~~~~~dl~~lA~~t~G~ 600 (862)
..+...+.. . +......++..+.|.
T Consensus 159 ~~l~~~~~~--~-~~~~~~~l~~~~~g~ 183 (313)
T PRK05564 159 KFISYKYND--I-KEEEKKSAIAFSDGI 183 (313)
T ss_pred HHHHHHhcC--C-CHHHHHHHHHHcCCC
Confidence 877765431 1 223344566666553
No 186
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.51 E-value=3.5e-08 Score=94.01 Aligned_cols=104 Identities=28% Similarity=0.395 Sum_probs=58.7
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceeeeeccc-chh-h-----hcccchhhH----HHHHHHHHhcCCceeEhHHHHH
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ-FVE-I-----YVGVGASRV----RSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~-~~~-~-----~~gq~~~~l----~~~f~~a~~~~p~iL~iDEid~ 499 (862)
+|+|.|+||+|||++++++|..++..+..|.+.. +.- . ++......+ .-+| ..++++|||..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 4799999999999999999999999998887642 211 1 111111100 1222 24899999988
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhccc---------cCCCcEEEEEecCCCC-----CCCccccCCCCc
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRPD-----ILDPALVRPGRF 557 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~---------~~~~~vlvI~tTN~~~-----~Ld~aLlrpgRf 557 (862)
..++ +.+.||+.|... .-...++||+|-|+.+ .++.+++. ||
T Consensus 74 appk--------------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 APPK--------------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S-HH--------------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred CCHH--------------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 7665 777888877642 2235689999999876 36677766 65
No 187
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.50 E-value=1.5e-06 Score=103.95 Aligned_cols=134 Identities=19% Similarity=0.184 Sum_probs=78.4
Q ss_pred cccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccc-hhhhcccchhhH---H
Q 002961 407 QYLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF-VEIYVGVGASRV---R 478 (862)
Q Consensus 407 ~l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~-~~~~~gq~~~~l---~ 478 (862)
.+.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|...+..|.+..+.- .-.|+.|....+ .
T Consensus 324 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~ 403 (556)
T PRK11819 324 VIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNK 403 (556)
T ss_pred EEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCC
Confidence 47788888888652 2 37888888899999999999999999999998888887765321 112444432111 1
Q ss_pred HHHHHHHhcCC--ce-eEhHHHHHhhhhccCc---------CCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCC
Q 002961 479 SLYQEAKDNAP--SV-VFIDELDAVGRERGLI---------KGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD 545 (862)
Q Consensus 479 ~~f~~a~~~~p--~i-L~iDEid~l~~~~~~~---------~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~ 545 (862)
.+++++..... .. ---.++..++...++. .=|||++.+..+...+ ..+..-+++..+|+..|
T Consensus 404 tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al-----~~~p~lllLDEPt~~LD 477 (556)
T PRK11819 404 TVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTL-----KQGGNVLLLDEPTNDLD 477 (556)
T ss_pred CHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHH-----hcCCCEEEEcCCCCCCC
Confidence 23333321100 00 0011122222222221 1299999999988877 23333444556665543
No 188
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.2e-07 Score=102.03 Aligned_cols=141 Identities=23% Similarity=0.422 Sum_probs=100.1
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCceeeee-cccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccCcC
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS-ASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIK 508 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~-~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~ 508 (862)
..++|.||+|+|||+||-.||.....||+.+- ..+.+...-.....++..+|+.+....-+++++|+|+.+..- .
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~----v 614 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY----V 614 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc----c
Confidence 45999999999999999999999999998763 333222112223456789999998888889999999998642 1
Q ss_pred CCCchhHHHHHHHHHHhhccccCCC-cEEEEEecCCCCCCCc-cccCCCCccccccCCCCCH-HhHHHHHH
Q 002961 509 GSGGQERDATLNQLLVCLDGFEGRG-NVITIASTNRPDILDP-ALVRPGRFDRKIFIPKPGL-IGRMEILK 576 (862)
Q Consensus 509 ~Sgge~~r~~l~~LL~~Ld~~~~~~-~vlvI~tTN~~~~Ld~-aLlrpgRfd~~I~~~~P~~-~~R~~Il~ 576 (862)
.-|....+.++..|+..+....+.+ +++|++||...+.|.. .++. .|+..|.+|..+. ++..+++.
T Consensus 615 pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 615 PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 2344455667777777777666554 5777788766554432 4555 7999999987755 55555554
No 189
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=3.1e-07 Score=102.51 Aligned_cols=133 Identities=22% Similarity=0.268 Sum_probs=88.9
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCce--e-eeecccchh-----------h-hc--c------------------
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNF--F-SISASQFVE-----------I-YV--G------------------ 471 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~--~-~i~~~~~~~-----------~-~~--g------------------ 471 (862)
+.|..++|+||.|+||+++++.+|..+.+.. . .-.|+.... . ++ .
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 6778899999999999999999998764321 0 011111000 0 00 0
Q ss_pred -------------cchhhHHHHHHHHHh----cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCc
Q 002961 472 -------------VGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGN 534 (862)
Q Consensus 472 -------------q~~~~l~~~f~~a~~----~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~ 534 (862)
-..+.++.+...+.. ....|++||++|.+... ..|.||..|+. ++.+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE--Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA--------------AANALLKTLEE--PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHH--------------HHHHHHHHhcC--CCcC
Confidence 011223443333321 12336677777776543 78999999994 5568
Q ss_pred EEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHH
Q 002961 535 VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH 578 (862)
Q Consensus 535 vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~ 578 (862)
+++|.+|+.++.|.|+++| |. ..+.|++|+.++..+.|...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8999999999999999999 55 38999999999888888654
No 190
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.47 E-value=2.1e-06 Score=102.48 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=46.8
Q ss_pred cccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 407 QYLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 407 ~l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
.+.++++++.|++. + .++.+..+..++|.||||+|||||+++|+|...+..|.+.++
T Consensus 322 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~ 382 (552)
T TIGR03719 322 VIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIG 382 (552)
T ss_pred EEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEEC
Confidence 47788888888642 2 378888888899999999999999999999988877777653
No 191
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.46 E-value=2.7e-07 Score=98.41 Aligned_cols=55 Identities=16% Similarity=0.104 Sum_probs=42.7
Q ss_pred ccccCccccccccc--c--ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDMY--R--RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~~--~--~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+..+++++.|++.. . ++.+..+.-++|.||||||||||+|+|++.+.+..|.+..
T Consensus 3 L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l 61 (258)
T COG1120 3 LEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLL 61 (258)
T ss_pred eEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEE
Confidence 45667777776532 2 5666667779999999999999999999998887776643
No 192
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.44 E-value=2.9e-07 Score=93.63 Aligned_cols=77 Identities=23% Similarity=0.129 Sum_probs=54.3
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccc-----hhhHHHHHHHHHhcCCceeEhHHHH
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVG-----ASRVRSLYQEAKDNAPSVVFIDELD 498 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~-----~~~l~~~f~~a~~~~p~iL~iDEid 498 (862)
+.+..+..++|.||||+|||||+++|+|...+..|.+.+....-.|..+. ...-+-.+..+....|.++++||..
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 56778888999999999999999999999888878776543211222222 1122344455556678999999975
Q ss_pred Hh
Q 002961 499 AV 500 (862)
Q Consensus 499 ~l 500 (862)
.-
T Consensus 100 s~ 101 (177)
T cd03222 100 AY 101 (177)
T ss_pred cc
Confidence 43
No 193
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=6.5e-07 Score=96.12 Aligned_cols=96 Identities=33% Similarity=0.547 Sum_probs=69.2
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhh-hcccchhhH-HHHHHHHH----hcCCceeEhHHHHHhhhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGVGASRV-RSLYQEAK----DNAPSVVFIDELDAVGRE 503 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~-~~gq~~~~l-~~~f~~a~----~~~p~iL~iDEid~l~~~ 503 (862)
.+|+|+||+|||||.|++.||..++.||-..++..+... |+|.....+ ..+++.+. ....+|++|||||.++..
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 469999999999999999999999999988888776554 898876654 44444431 223569999999999765
Q ss_pred ccC---cCCCCchhHHHHHHHHHHhhcc
Q 002961 504 RGL---IKGSGGQERDATLNQLLVCLDG 528 (862)
Q Consensus 504 ~~~---~~~Sgge~~r~~l~~LL~~Ld~ 528 (862)
... ..+-.|+. +...||..|++
T Consensus 178 SeN~SITRDVSGEG---VQQALLKiiEG 202 (408)
T COG1219 178 SENPSITRDVSGEG---VQQALLKIIEG 202 (408)
T ss_pred CCCCCcccccCchH---HHHHHHHHHcC
Confidence 322 22234444 44556666665
No 194
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.43 E-value=1e-06 Score=105.34 Aligned_cols=188 Identities=10% Similarity=0.121 Sum_probs=100.2
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceee-eecc---cchhhh------------cccchhhHHHHHHHHHh----
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS-ISAS---QFVEIY------------VGVGASRVRSLYQEAKD---- 486 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~-i~~~---~~~~~~------------~gq~~~~l~~~f~~a~~---- 486 (862)
..+..++|+||+|+||||+++++++.++..+.+ ++.. .....| +......+..++..+..
T Consensus 108 ~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~ 187 (637)
T TIGR00602 108 APKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQM 187 (637)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcc
Confidence 444558999999999999999999988765433 1110 000000 01112223444444431
Q ss_pred ------cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHH-hhccccCCCcEEEEEecC-CCC--------C----
Q 002961 487 ------NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLV-CLDGFEGRGNVITIASTN-RPD--------I---- 546 (862)
Q Consensus 487 ------~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~-~Ld~~~~~~~vlvI~tTN-~~~--------~---- 546 (862)
....||+|||++.+.... ...+..+|. .. ...+.+.+|++++ .+. .
T Consensus 188 ~g~~~~~~~~IILIDEiPn~~~r~-----------~~~lq~lLr~~~---~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~ 253 (637)
T TIGR00602 188 LGDDLMTDKKIILVEDLPNQFYRD-----------TRALHEILRWKY---VSIGRCPLVFIITESLEGDNNQRRLLFPAE 253 (637)
T ss_pred cccccCCceeEEEeecchhhchhh-----------HHHHHHHHHHHh---hcCCCceEEEEecCCccccccccccccchh
Confidence 234599999998765321 013334443 11 1123333443332 111 1
Q ss_pred --CCccccCCCCccccccCCCCCHHhHHHHHHHHHccCC--------CCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 002961 547 --LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP--------MADDVDYLAVASMTDGMVGAELANIVEVAAINM 616 (862)
Q Consensus 547 --Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~--------~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A 616 (862)
+.+++++..|+. +|.|++.+.....+.|...+.... +.....+..++....| ||+.+++.....+
T Consensus 254 ~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~ 328 (637)
T TIGR00602 254 TIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSG----DIRSAINSLQFSS 328 (637)
T ss_pred cccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHH
Confidence 336777544554 799999999997777776664321 1122356667665555 5655555444333
Q ss_pred HH-------hCCcccCHHHHHHHH
Q 002961 617 MR-------DGRTEITTDDLLQAA 633 (862)
Q Consensus 617 ~~-------~~~~~It~edl~~Al 633 (862)
.+ .+...++..++..+.
T Consensus 329 ~~~g~~a~~~~~~~vs~~hv~~a~ 352 (637)
T TIGR00602 329 SKSGSLPIKKRMSTKSDAHASKSK 352 (637)
T ss_pred hcCCccccccccccccHHHhhhcc
Confidence 22 233456666665553
No 195
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=1.2e-06 Score=97.04 Aligned_cols=153 Identities=23% Similarity=0.325 Sum_probs=97.1
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCce----eeeecccch------hh-hc-------c------cchhhHHHHHH
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNF----FSISASQFV------EI-YV-------G------VGASRVRSLYQ 482 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~----~~i~~~~~~------~~-~~-------g------q~~~~l~~~f~ 482 (862)
+.|..++|+||.|+||++++..+|..+-..- +...+-.+. +. ++ | -..+.++.+.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 5667899999999999999999998652210 000000000 00 11 0 01233455555
Q ss_pred HHHhc----CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCcc
Q 002961 483 EAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFD 558 (862)
Q Consensus 483 ~a~~~----~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd 558 (862)
.+... ...|++||++|.+... ..|.||..|+.- ..++++|.+|+.++.|.|.++| |..
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLEEP--p~~~~fiL~~~~~~~lLpTIrS--RCq 165 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAINRA--------------ACNALLKTLEEP--SPGRYLWLISAQPARLPATIRS--RCQ 165 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhCHH--------------HHHHHHHHhhCC--CCCCeEEEEECChhhCchHHHh--hhe
Confidence 44332 2358999999998654 789999999864 4567888888889999999999 544
Q ss_pred ccccCCCCCHHhHHHHHHHHHccCCCCCcccHHHHHhhcCCCCHH
Q 002961 559 RKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGA 603 (862)
Q Consensus 559 ~~I~~~~P~~~~R~~Il~~~l~~~~~~~~~dl~~lA~~t~G~s~a 603 (862)
.+.|++|+.++-...+... .. +..+...++..+.|..+.
T Consensus 166 -~i~~~~~~~~~~~~~L~~~----~~-~~~~a~~~~~l~~G~p~~ 204 (319)
T PRK08769 166 -RLEFKLPPAHEALAWLLAQ----GV-SERAAQEALDAARGHPGL 204 (319)
T ss_pred -EeeCCCcCHHHHHHHHHHc----CC-ChHHHHHHHHHcCCCHHH
Confidence 7889999988777776532 22 222233455555554443
No 196
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.40 E-value=4.3e-07 Score=96.45 Aligned_cols=55 Identities=24% Similarity=0.248 Sum_probs=44.2
Q ss_pred ccccCccccccc--ccc--ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSD--MYR--RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~--~~~--~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++++++++.|+. ... ++.+..+.-+.|+||||+|||||+|+|.|.+.+..|++..
T Consensus 5 i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~ 63 (254)
T COG1121 5 IEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63 (254)
T ss_pred EEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEE
Confidence 566788888874 222 6667777779999999999999999999988888777764
No 197
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=7.4e-07 Score=99.52 Aligned_cols=132 Identities=19% Similarity=0.178 Sum_probs=88.0
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCce--eeeeccc------c-----hhh-hc---cc--chhhHHHHHHHHHh-
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNF--FSISASQ------F-----VEI-YV---GV--GASRVRSLYQEAKD- 486 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~--~~i~~~~------~-----~~~-~~---gq--~~~~l~~~f~~a~~- 486 (862)
+.+..++|+||+|+||+++++.++..+-..- ....|+. + .+. ++ +. ....++.+.+.+..
T Consensus 26 ~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~ 105 (329)
T PRK08058 26 RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKS 105 (329)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhC
Confidence 4566789999999999999999998753211 0001110 0 000 00 11 12234555554432
Q ss_pred ---cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccC
Q 002961 487 ---NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFI 563 (862)
Q Consensus 487 ---~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~ 563 (862)
....|++||+++.+... ..|.||..|+.. +.++++|.+|+.+..+.|+++++|+ ++.|
T Consensus 106 ~~~~~~kvviI~~a~~~~~~--------------a~NaLLK~LEEP--p~~~~~Il~t~~~~~ll~TIrSRc~---~i~~ 166 (329)
T PRK08058 106 GVESNKKVYIIEHADKMTAS--------------AANSLLKFLEEP--SGGTTAILLTENKHQILPTILSRCQ---VVEF 166 (329)
T ss_pred CcccCceEEEeehHhhhCHH--------------HHHHHHHHhcCC--CCCceEEEEeCChHhCcHHHHhhce---eeeC
Confidence 23458999999988654 778999999864 4567777788888899999999443 8999
Q ss_pred CCCCHHhHHHHHHH
Q 002961 564 PKPGLIGRMEILKV 577 (862)
Q Consensus 564 ~~P~~~~R~~Il~~ 577 (862)
++|+.++...++..
T Consensus 167 ~~~~~~~~~~~L~~ 180 (329)
T PRK08058 167 RPLPPESLIQRLQE 180 (329)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999887777653
No 198
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.40 E-value=4e-07 Score=106.96 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=46.8
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeeccc
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 464 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~ 464 (862)
+.+.++++.|++. + .++.+..+.+++|+|+||+|||||+++|+|...+..|.|....
T Consensus 4 i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~ 64 (530)
T COG0488 4 ITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK 64 (530)
T ss_pred EEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC
Confidence 4556677777552 2 3788899999999999999999999999999988888887654
No 199
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=1e-06 Score=97.44 Aligned_cols=132 Identities=23% Similarity=0.334 Sum_probs=89.7
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCcee-eeecccc-----------hhh-hc-----cc--chhhHHHHHHHHHh
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF-SISASQF-----------VEI-YV-----GV--GASRVRSLYQEAKD 486 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~-~i~~~~~-----------~~~-~~-----gq--~~~~l~~~f~~a~~ 486 (862)
+.+..++|+||.|+||++++..+|..+-..-. .-.|+.. .+. ++ +. ..+.++.+.+.+..
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~ 102 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQE 102 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhh
Confidence 56678999999999999999999986522100 0011110 000 01 11 12234544444332
Q ss_pred ----cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCcccccc
Q 002961 487 ----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIF 562 (862)
Q Consensus 487 ----~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~ 562 (862)
....|++||++|.+... ..|.||..|+. ++.++++|..|+.++.+.|.++| |.. .+.
T Consensus 103 ~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RCq-~~~ 163 (319)
T PRK06090 103 SSQLNGYRLFVIEPADAMNES--------------ASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RCQ-QWV 163 (319)
T ss_pred CcccCCceEEEecchhhhCHH--------------HHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cce-eEe
Confidence 23468999999998654 78999999995 45578889888999999999999 443 889
Q ss_pred CCCCCHHhHHHHHHH
Q 002961 563 IPKPGLIGRMEILKV 577 (862)
Q Consensus 563 ~~~P~~~~R~~Il~~ 577 (862)
|++|+.++..+.+..
T Consensus 164 ~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 164 VTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999998887777653
No 200
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.37 E-value=2.6e-06 Score=104.06 Aligned_cols=133 Identities=22% Similarity=0.215 Sum_probs=77.7
Q ss_pred ccccCCeEEEECCCCCchhHHHHHHHhhccCc-------eeeeecccchhhhcccchhhHHHHHH--HHHhcCCceeEhH
Q 002961 425 GVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN-------FFSISASQFVEIYVGVGASRVRSLYQ--EAKDNAPSVVFID 495 (862)
Q Consensus 425 ~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~-------~~~i~~~~~~~~~~gq~~~~l~~~f~--~a~~~~p~iL~iD 495 (862)
.++....|+|+|.||||||++++.++...... +..+.+..... +.+...... .++ .+.....++++||
T Consensus 488 ~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~--~le~GaLvlAdgGtL~ID 564 (915)
T PTZ00111 488 NFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRA--MIQPGAVVLANGGVCCID 564 (915)
T ss_pred cccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhh-hcccccCcc--cccCCcEEEcCCCeEEec
Confidence 35666789999999999999999998754321 11111211110 011000000 000 0111234689999
Q ss_pred HHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc-----------CCCcEEEEEecCCCC-------------CCCccc
Q 002961 496 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-------------ILDPAL 551 (862)
Q Consensus 496 Eid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~-----------~~~~vlvI~tTN~~~-------------~Ld~aL 551 (862)
|++.+... ....|++.|+.-. -+..+.||+|+|+.. .|+++|
T Consensus 565 Eidkms~~--------------~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~L 630 (915)
T PTZ00111 565 ELDKCHNE--------------SRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSL 630 (915)
T ss_pred chhhCCHH--------------HHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHH
Confidence 99998543 4555666664321 135689999999852 277899
Q ss_pred cCCCCccccc-cCCCCCHHhHHHHHH
Q 002961 552 VRPGRFDRKI-FIPKPGLIGRMEILK 576 (862)
Q Consensus 552 lrpgRfd~~I-~~~~P~~~~R~~Il~ 576 (862)
++ |||.++ .++.|+.+.-..|..
T Consensus 631 LS--RFDLIf~l~D~~d~~~D~~lA~ 654 (915)
T PTZ00111 631 FT--RFDLIYLVLDHIDQDTDQLISL 654 (915)
T ss_pred hh--hhcEEEEecCCCChHHHHHHHH
Confidence 99 999764 455666655444433
No 201
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.37 E-value=3.5e-06 Score=100.26 Aligned_cols=187 Identities=14% Similarity=0.089 Sum_probs=123.4
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccC--ceeeeecccchhhhcccchhhHHHHHH---------HHHhcCCceeEhHHHH
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISASQFVEIYVGVGASRVRSLYQ---------EAKDNAPSVVFIDELD 498 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~--~~~~i~~~~~~~~~~gq~~~~l~~~f~---------~a~~~~p~iL~iDEid 498 (862)
.||+|.|+.|+||||++++++..+.. +|..+..+......+|.. .+...+. .+...+.+|||+||+.
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~--Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n 103 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGL--DLAATLRAGRPVAQRGLLAEADGGVLVLAMAE 103 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCc--hHHhHhhcCCcCCCCCceeeccCCEEEecCcc
Confidence 57999999999999999999998754 666655443333344432 0111110 1112234699999998
Q ss_pred HhhhhccCcCCCCchhHHHHHHHHHHhhccc-----------cCCCcEEEEEecCCC---CCCCccccCCCCccccccCC
Q 002961 499 AVGRERGLIKGSGGQERDATLNQLLVCLDGF-----------EGRGNVITIASTNRP---DILDPALVRPGRFDRKIFIP 564 (862)
Q Consensus 499 ~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~-----------~~~~~vlvI~tTN~~---~~Ld~aLlrpgRfd~~I~~~ 564 (862)
.+... +++.|++.|+.- .-...+++|++.|.. ..|+++++. ||+.+|.++
T Consensus 104 ~~~~~--------------~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~ 167 (584)
T PRK13406 104 RLEPG--------------TAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLD 167 (584)
T ss_pred cCCHH--------------HHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcC
Confidence 77654 888999888752 123568888875432 448899999 999999999
Q ss_pred CCCHHhH-------HHHHH--HHHccCCCCCcccHHHHHh--hcCCC-CHHHHHHHHHHHHHHHHHhCCcccCHHHHHHH
Q 002961 565 KPGLIGR-------MEILK--VHARKKPMADDVDYLAVAS--MTDGM-VGAELANIVEVAAINMMRDGRTEITTDDLLQA 632 (862)
Q Consensus 565 ~P~~~~R-------~~Il~--~~l~~~~~~~~~dl~~lA~--~t~G~-s~adI~~lv~~A~~~A~~~~~~~It~edl~~A 632 (862)
.|+..+. ..|.. ..+.+..+. +..+..++. ..-|. |.+-...+++.|...|..+|+..|+.+||.+|
T Consensus 168 ~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~-~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~A 246 (584)
T PRK13406 168 GLALRDAREIPIDADDIAAARARLPAVGPP-PEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALA 246 (584)
T ss_pred CCChHHhcccCCCHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 8875432 12332 222322222 222222222 12354 66666689999999999999999999999999
Q ss_pred HHH
Q 002961 633 AQI 635 (862)
Q Consensus 633 l~~ 635 (862)
+..
T Consensus 247 a~l 249 (584)
T PRK13406 247 ARL 249 (584)
T ss_pred HHH
Confidence 983
No 202
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.32 E-value=5.1e-06 Score=88.23 Aligned_cols=130 Identities=22% Similarity=0.271 Sum_probs=86.6
Q ss_pred cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCC-------------CCCCCccccC
Q 002961 487 NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR-------------PDILDPALVR 553 (862)
Q Consensus 487 ~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~-------------~~~Ld~aLlr 553 (862)
.-|+++||||++.+--. .+..|-..++.-- .-+||.+||+ |..+++.|+.
T Consensus 295 lvPGVLFIDEVhMLDiE--------------cFTyL~kalES~i---aPivifAsNrG~~~irGt~d~~sPhGip~dllD 357 (456)
T KOG1942|consen 295 LVPGVLFIDEVHMLDIE--------------CFTYLHKALESPI---APIVIFASNRGMCTIRGTEDILSPHGIPPDLLD 357 (456)
T ss_pred hcCcceEeeehhhhhhH--------------HHHHHHHHhcCCC---CceEEEecCCcceeecCCcCCCCCCCCCHHHhh
Confidence 45899999999877322 3344444444322 2256666654 3446777776
Q ss_pred CCCccccccCCCCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHH
Q 002961 554 PGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA 632 (862)
Q Consensus 554 pgRfd~~I~~~~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~A 632 (862)
|+- +|..-+++.++.++|+++......+. ++..+..++......|-+-..+|+.-|...|...|+..|..+|++++
T Consensus 358 --Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~ 434 (456)
T KOG1942|consen 358 --RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEV 434 (456)
T ss_pred --hee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHH
Confidence 543 56666788889999999887655443 33345566666555566666677776777888889999999999998
Q ss_pred HHHH
Q 002961 633 AQIE 636 (862)
Q Consensus 633 l~~~ 636 (862)
-...
T Consensus 435 ~~Lf 438 (456)
T KOG1942|consen 435 TELF 438 (456)
T ss_pred HHHH
Confidence 7643
No 203
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.31 E-value=9.5e-07 Score=91.09 Aligned_cols=220 Identities=15% Similarity=0.195 Sum_probs=118.2
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc-cC----ceeeeecccchhhhcccchhhHHHHHHHHHhcCC---ceeEhHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA-GV----NFFSISASQFVEIYVGVGASRVRSLYQEAKDNAP---SVVFIDELDAVG 501 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l-~~----~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p---~iL~iDEid~l~ 501 (862)
.+++|.||||+||||-+.+||.++ |. -+.+++.++-.. .+.....++.+-+.-...+| .|+++||.|++.
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRG--IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERG--IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccc--cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh
Confidence 368999999999999999999875 32 233444443111 11111112222111112233 489999999985
Q ss_pred hhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHH-HHHHc
Q 002961 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEIL-KVHAR 580 (862)
Q Consensus 502 ~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il-~~~l~ 580 (862)
.. +...|-..|+-+.. ..-+..++|..+.+=..+.+ |.. .+.+...+..+...-+ ...-.
T Consensus 127 ~g--------------AQQAlRRtMEiyS~--ttRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~ 187 (333)
T KOG0991|consen 127 AG--------------AQQALRRTMEIYSN--TTRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKA 187 (333)
T ss_pred hH--------------HHHHHHHHHHHHcc--cchhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHH
Confidence 32 33334444443433 33566677888887777777 433 4445445444433333 22222
Q ss_pred cCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHhccccccccccccchhHH---HHH
Q 002961 581 KKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQV---AIN 657 (862)
Q Consensus 581 ~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~~~~~~~~~~~~~~r~v---A~h 657 (862)
+..-..+.-++.+.-..+|- .++.+|.. ++...|-..|+.+.+..+++......+. ...... -++
T Consensus 188 Ekv~yt~dgLeaiifta~GD----MRQalNnL--Qst~~g~g~Vn~enVfKv~d~PhP~~v~------~ml~~~~~~~~~ 255 (333)
T KOG0991|consen 188 EKVNYTDDGLEAIIFTAQGD----MRQALNNL--QSTVNGFGLVNQENVFKVCDEPHPLLVK------KMLQACLKRNID 255 (333)
T ss_pred hCCCCCcchHHHhhhhccch----HHHHHHHH--HHHhccccccchhhhhhccCCCChHHHH------HHHHHHHhccHH
Confidence 33233445566777666664 44444443 3445677778888888877622111110 111111 356
Q ss_pred HHHHHHHHHhCCCCCccceEEEecC
Q 002961 658 EAAMAVVAVNFPDLKNIEFVTIAPR 682 (862)
Q Consensus 658 EaGHAlva~ll~~~~~i~~VTI~pr 682 (862)
||-.-+...+-.++.+.+.|+-..|
T Consensus 256 ~A~~il~~lw~lgysp~Dii~~~FR 280 (333)
T KOG0991|consen 256 EALKILAELWKLGYSPEDIITTLFR 280 (333)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 6766666655556666666554444
No 204
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=1.3e-06 Score=97.31 Aligned_cols=131 Identities=22% Similarity=0.335 Sum_probs=88.6
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccC-------------------------ceeeeecccchhhhcc-----cchhh
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGV-------------------------NFFSISASQFVEIYVG-----VGASR 476 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~-------------------------~~~~i~~~~~~~~~~g-----q~~~~ 476 (862)
+.+..++|+||+|+|||++++.+|..+.+ ++.+++...-. .--| -..+.
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 67788999999999999999999987632 12222211000 0000 12334
Q ss_pred HHHHHHHHHhc----CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCcccc
Q 002961 477 VRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALV 552 (862)
Q Consensus 477 l~~~f~~a~~~----~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLl 552 (862)
++.+.+.+... ...|+++|+++.+... ..+.++..|+... .++.+|.+|+.++.+.+.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~--------------a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNLQ--------------AANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCHH--------------HHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHH
Confidence 56666665432 2357888889887554 6678888888764 34667778888899999999
Q ss_pred CCCCccccccCCCCCHHhHHHHHHH
Q 002961 553 RPGRFDRKIFIPKPGLIGRMEILKV 577 (862)
Q Consensus 553 rpgRfd~~I~~~~P~~~~R~~Il~~ 577 (862)
+ |.. .+.|++|+.++....|..
T Consensus 162 S--Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 S--RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred H--Hhh-hhcCCCCCHHHHHHHHHh
Confidence 8 443 888999999887777754
No 205
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.28 E-value=1.5e-06 Score=87.02 Aligned_cols=110 Identities=21% Similarity=0.110 Sum_probs=67.2
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccch----------hh---hcccc--hhhHHHHHHHHHhc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV----------EI---YVGVG--ASRVRSLYQEAKDN 487 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~----------~~---~~gq~--~~~l~~~f~~a~~~ 487 (862)
++.+.++..++|.||||+|||||+++|+|...+..|.+...... .. |+.+. ....+-.+..+...
T Consensus 20 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALAR 99 (163)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhc
Confidence 67788899999999999999999999999987777765432210 00 21111 11224455555667
Q ss_pred CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCC
Q 002961 488 APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 546 (862)
Q Consensus 488 ~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~ 546 (862)
.|.++++||...-+. ...+..+..++..+ ... +..+|.+|++.+.
T Consensus 100 ~p~illlDEP~~~LD----------~~~~~~l~~~l~~~---~~~-~~tiii~sh~~~~ 144 (163)
T cd03216 100 NARLLILDEPTAALT----------PAEVERLFKVIRRL---RAQ-GVAVIFISHRLDE 144 (163)
T ss_pred CCCEEEEECCCcCCC----------HHHHHHHHHHHHHH---HHC-CCEEEEEeCCHHH
Confidence 899999999754332 22233444444333 222 3456666666543
No 206
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.27 E-value=6.8e-06 Score=98.70 Aligned_cols=101 Identities=21% Similarity=0.306 Sum_probs=66.1
Q ss_pred cEEEEEecCCC--CCCCccccCCCCcc---ccccCCC--C-CHHhHHHHHHHHH---ccCCCCCcccH---HHHHh---h
Q 002961 534 NVITIASTNRP--DILDPALVRPGRFD---RKIFIPK--P-GLIGRMEILKVHA---RKKPMADDVDY---LAVAS---M 596 (862)
Q Consensus 534 ~vlvI~tTN~~--~~Ld~aLlrpgRfd---~~I~~~~--P-~~~~R~~Il~~~l---~~~~~~~~~dl---~~lA~---~ 596 (862)
++.+|+++|.. ..++|.|++ ||+ ..+.|+. | +.+.+..+++... ........++- ..+.+ +
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 57889998864 578999999 998 5565542 3 4555655544333 22211122222 22221 1
Q ss_pred cCC------CCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHH
Q 002961 597 TDG------MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 636 (862)
Q Consensus 597 t~G------~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~ 636 (862)
..| .+.++|.++++.|...|..++...|+.+|+.+|+...
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 111 3569999999999888888888899999999998843
No 207
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=3e-06 Score=94.23 Aligned_cols=96 Identities=33% Similarity=0.530 Sum_probs=67.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCceeeeecccchh-hhcccchhhH-HHHHHHH----HhcCCceeEhHHHHHhhhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE-IYVGVGASRV-RSLYQEA----KDNAPSVVFIDELDAVGRE 503 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~-~~~gq~~~~l-~~~f~~a----~~~~p~iL~iDEid~l~~~ 503 (862)
.+|+|.||+|+|||.|++.||.-++.|+...+|..+.. .|+|...+.+ ..++..+ ....-+|+||||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 46899999999999999999999999999999988654 4888765543 4455443 2334579999999999733
Q ss_pred ccC---cCCCCchhHHHHHHHHHHhhcc
Q 002961 504 RGL---IKGSGGQERDATLNQLLVCLDG 528 (862)
Q Consensus 504 ~~~---~~~Sgge~~r~~l~~LL~~Ld~ 528 (862)
... ..+-+|+-. ...||..+++
T Consensus 307 ~~~i~~~RDVsGEGV---QQaLLKllEG 331 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGV---QQALLKLLEG 331 (564)
T ss_pred CccccccccccchhH---HHHHHHHhcc
Confidence 211 123355554 4445555554
No 208
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.26 E-value=1.3e-06 Score=97.20 Aligned_cols=55 Identities=27% Similarity=0.278 Sum_probs=44.6
Q ss_pred ccccCccccccccc----cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDMY----RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~~----~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++++++++.|++.. .++.+..++-+.|.||+||||||++++|||...+..|.|..
T Consensus 6 l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l 64 (352)
T COG3842 6 LEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILL 64 (352)
T ss_pred EEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 66778888888532 36777777779999999999999999999988888777743
No 209
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.25 E-value=6e-06 Score=92.17 Aligned_cols=167 Identities=19% Similarity=0.181 Sum_probs=93.5
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh-----hcccchhhH-------HHHHHHHHhcCCceeE
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV-------RSLYQEAKDNAPSVVF 493 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~-----~~gq~~~~l-------~~~f~~a~~~~p~iL~ 493 (862)
...|+|+|++||||+++|++|.... ..+|+.++|+.+... .+|.....+ ...|+ ....+.||
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~---~a~gGtL~ 98 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFE---RADGGTLF 98 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchh---hCCCCEEE
Confidence 4568999999999999999997643 468999999864322 222111100 11122 23456899
Q ss_pred hHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc---------CCCcEEEEEecCCC-------CCCCccccCCCCc
Q 002961 494 IDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRP-------DILDPALVRPGRF 557 (862)
Q Consensus 494 iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~---------~~~~vlvI~tTN~~-------~~Ld~aLlrpgRf 557 (862)
||||+.+... ....|+..|+.-. ...++-+|++||.. ..+.+.|.. |+
T Consensus 99 Ldei~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl 162 (329)
T TIGR02974 99 LDELATASLL--------------VQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RL 162 (329)
T ss_pred eCChHhCCHH--------------HHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hh
Confidence 9999998654 5566666665321 12357888888653 234455555 55
Q ss_pred c-ccccCCCCC--HHhHHHHHHHHHccC----CCC--CcccH---HHHHhhcCCCCHHHHHHHHHHHHH
Q 002961 558 D-RKIFIPKPG--LIGRMEILKVHARKK----PMA--DDVDY---LAVASMTDGMVGAELANIVEVAAI 614 (862)
Q Consensus 558 d-~~I~~~~P~--~~~R~~Il~~~l~~~----~~~--~~~dl---~~lA~~t~G~s~adI~~lv~~A~~ 614 (862)
. ..|.+|+.. .++...++.+++... ... ..+.- ..|....---+.++|.++++.++.
T Consensus 163 ~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~ 231 (329)
T TIGR02974 163 AFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVY 231 (329)
T ss_pred cchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 3 345555543 244555666655321 111 12332 233333211244666677766654
No 210
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.24 E-value=2.2e-06 Score=89.71 Aligned_cols=41 Identities=20% Similarity=0.163 Sum_probs=36.7
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+|.+..++++.|+|+||+|||||++.|+|...|..|.+.+.
T Consensus 47 sf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~ 87 (249)
T COG1134 47 SFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVT 87 (249)
T ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEc
Confidence 57788899999999999999999999999999888887543
No 211
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.23 E-value=2e-06 Score=84.47 Aligned_cols=77 Identities=22% Similarity=0.212 Sum_probs=53.8
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccch-hhhcccch--hhHHHHHHHHHhcCCceeEhHHHHH
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV-EIYVGVGA--SRVRSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~-~~~~gq~~--~~l~~~f~~a~~~~p~iL~iDEid~ 499 (862)
++.+..++.++|.||||+|||||+++|+|...+..|.+...... ..|+.+.. ..-+-.+..+....|.++++||...
T Consensus 20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 57788889999999999999999999999988877777554311 11222211 1123344455566789999999754
No 212
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.23 E-value=5.5e-07 Score=92.95 Aligned_cols=28 Identities=39% Similarity=0.585 Sum_probs=21.5
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
..+.+++|+||||||||++++.+.+.+.
T Consensus 20 aG~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 20 AGGHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp HCC--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 3457899999999999999999998763
No 213
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.23 E-value=1.7e-05 Score=82.54 Aligned_cols=162 Identities=20% Similarity=0.255 Sum_probs=104.2
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhcccchhhHHHHHHHHHhcC-CceeEhHHHHHhhhh
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNA-PSVVFIDELDAVGRE 503 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~-p~iL~iDEid~l~~~ 503 (862)
+-.+|+|+|..|||||+|+|++.++. +..+++++-.++. .+-.+++.++..+ .-|+|.|++-
T Consensus 84 pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~---------~Lp~l~~~Lr~~~~kFIlFcDDLS----- 149 (287)
T COG2607 84 PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA---------TLPDLVELLRARPEKFILFCDDLS----- 149 (287)
T ss_pred cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh---------hHHHHHHHHhcCCceEEEEecCCC-----
Confidence 34679999999999999999999876 4556666654422 2455666666543 3478888761
Q ss_pred ccCcCCCCchhHHHHHHHHHHhhccc--cCCCcEEEEEecCCCCCCCcccc--------------------CCCCccccc
Q 002961 504 RGLIKGSGGQERDATLNQLLVCLDGF--EGRGNVITIASTNRPDILDPALV--------------------RPGRFDRKI 561 (862)
Q Consensus 504 ~~~~~~Sgge~~r~~l~~LL~~Ld~~--~~~~~vlvI~tTN~~~~Ld~aLl--------------------rpgRfd~~I 561 (862)
+. .|.. ....|-..|++- ..+.+|+|-+|+|+-..++..+. -.-||...+
T Consensus 150 Fe----~gd~----~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL 221 (287)
T COG2607 150 FE----EGDD----AYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWL 221 (287)
T ss_pred CC----CCch----HHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceee
Confidence 11 1111 233444455653 23568999999998766652111 123899999
Q ss_pred cCCCCCHHhHHHHHHHHHccCCCCCc---ccHH--HHHhhcCCCCHHHHHHHHHH
Q 002961 562 FIPKPGLIGRMEILKVHARKKPMADD---VDYL--AVASMTDGMVGAELANIVEV 611 (862)
Q Consensus 562 ~~~~P~~~~R~~Il~~~l~~~~~~~~---~dl~--~lA~~t~G~s~adI~~lv~~ 611 (862)
.|++++.++-..|+.+++....++-+ .+.. ..|..-.|-||+-.-+.++.
T Consensus 222 ~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF~~~ 276 (287)
T COG2607 222 SFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQFIRD 276 (287)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhHHHHHHH
Confidence 99999999999999999977655432 1111 23344445566655555543
No 214
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=4.6e-06 Score=92.46 Aligned_cols=155 Identities=21% Similarity=0.260 Sum_probs=97.8
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCc------------------eeeeecccchhh---------hcc-------c
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------------FFSISASQFVEI---------YVG-------V 472 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~------------------~~~i~~~~~~~~---------~~g-------q 472 (862)
+.+..++|+||.|+||++++.++|..+-.. +..+........ ..| +
T Consensus 24 rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (314)
T PRK07399 24 RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQ 103 (314)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhcccccccccc
Confidence 446789999999999999999998875321 111111000000 000 0
Q ss_pred -chhhHHHHHHHHHh----cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCC
Q 002961 473 -GASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 547 (862)
Q Consensus 473 -~~~~l~~~f~~a~~----~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~L 547 (862)
....++.+.+.+.. ....|++||++|.+... ..|.||..|+... +.++|..|+.++.|
T Consensus 104 I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~--------------aaNaLLK~LEEPp---~~~fILi~~~~~~L 166 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEA--------------AANALLKTLEEPG---NGTLILIAPSPESL 166 (314)
T ss_pred CcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHH--------------HHHHHHHHHhCCC---CCeEEEEECChHhC
Confidence 01123444444432 23458888888887543 7789999998654 33566677788999
Q ss_pred CccccCCCCccccccCCCCCHHhHHHHHHHHHccCCCCCcccHHHHHhhcCCCCHH
Q 002961 548 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGA 603 (862)
Q Consensus 548 d~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~~~~~~dl~~lA~~t~G~s~a 603 (862)
.|++++ |.. .+.|++|+.++..+++........ .+.+...++....|..+.
T Consensus 167 l~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~~~a~Gs~~~ 217 (314)
T PRK07399 167 LPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELLALAQGSPGA 217 (314)
T ss_pred cHHHHh--hce-EEecCCCCHHHHHHHHHHhhcccc--chhHHHHHHHHcCCCHHH
Confidence 999999 543 899999999999998887643211 122345677777664444
No 215
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.22 E-value=2e-05 Score=92.51 Aligned_cols=187 Identities=19% Similarity=0.214 Sum_probs=108.2
Q ss_pred eEEEECCCCCchhHHHHHHHhhc----------cCceeeeecccchhh---h-------cccch------hhHHHHHHHH
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFVEI---Y-------VGVGA------SRVRSLYQEA 484 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l----------~~~~~~i~~~~~~~~---~-------~gq~~------~~l~~~f~~a 484 (862)
.+.|.|-||||||.+++.+...+ ...+++|++-.+... | .|... ..+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 58899999999999998888755 245556655443322 2 12111 1111112100
Q ss_pred -HhcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcc-ccCCCcEEEEEecCCCCCCC----ccccCCCCcc
Q 002961 485 -KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG-FEGRGNVITIASTNRPDILD----PALVRPGRFD 558 (862)
Q Consensus 485 -~~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~-~~~~~~vlvI~tTN~~~~Ld----~aLlrpgRfd 558 (862)
-...++|++|||+|.++.+.. .++..| +|- ...+.+++||+..|..+... ...-+ |++
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~Q-----------dVlYn~---fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg 567 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRSQ-----------DVLYNI---FDWPTLKNSKLVVIAIANTMDLPERLLMNRVSS--RLG 567 (767)
T ss_pred CCCCCCEEEEeccHHHHhcccH-----------HHHHHH---hcCCcCCCCceEEEEecccccCHHHHhccchhh--hcc
Confidence 123478999999999987531 133333 332 13456889998888866532 22223 444
Q ss_pred -ccccCCCCCHHhHHHHHHHHHccCCCCCcccHHHHHhh---cCCCCHHHHHHHHHHHHHHHHHhCC-------cccCHH
Q 002961 559 -RKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASM---TDGMVGAELANIVEVAAINMMRDGR-------TEITTD 627 (862)
Q Consensus 559 -~~I~~~~P~~~~R~~Il~~~l~~~~~~~~~dl~~lA~~---t~G~s~adI~~lv~~A~~~A~~~~~-------~~It~e 627 (862)
..|.|.+++..+..+|+...+.....-..-...-+|.. ..|-..+ ...+|++|.-.|..+.. ..|+.-
T Consensus 568 ~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRr-aldic~RA~Eia~~~~~~~k~~~~q~v~~~ 646 (767)
T KOG1514|consen 568 LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARR-ALDICRRAAEIAEERNVKGKLAVSQLVGIL 646 (767)
T ss_pred ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHH-HHHHHHHHHHHhhhhcccccccccceeehH
Confidence 36899999999999999999876522221112222222 2233333 44777777766665543 345666
Q ss_pred HHHHHHH
Q 002961 628 DLLQAAQ 634 (862)
Q Consensus 628 dl~~Al~ 634 (862)
|+.+|+.
T Consensus 647 ~v~~Ai~ 653 (767)
T KOG1514|consen 647 HVMEAIN 653 (767)
T ss_pred HHHHHHH
Confidence 6666654
No 216
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.22 E-value=2.9e-06 Score=87.24 Aligned_cols=55 Identities=22% Similarity=0.273 Sum_probs=43.2
Q ss_pred ccccCccccccccc----cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDMY----RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~~----~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++.+.|++.. .++.+..++-++|+||+|+|||||+++|.+--.+..|.|..
T Consensus 3 i~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i 61 (240)
T COG1126 3 IEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITV 61 (240)
T ss_pred EEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEE
Confidence 45567777777632 37888888889999999999999999999876666665544
No 217
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=6.4e-06 Score=89.25 Aligned_cols=84 Identities=29% Similarity=0.429 Sum_probs=59.5
Q ss_pred CceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccc--------cCCCcEEEEEec----CCCCCCCccccCCCC
Q 002961 489 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF--------EGRGNVITIAST----NRPDILDPALVRPGR 556 (862)
Q Consensus 489 p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~--------~~~~~vlvI~tT----N~~~~Ld~aLlrpgR 556 (862)
-+|+||||||.++.+.+ . ++++-....+...||-.+++. ...+++++|++. ..|+.|=|.|. ||
T Consensus 251 ~GIvFIDEIDKIa~~~~-~-g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GR 326 (444)
T COG1220 251 NGIVFIDEIDKIAKRGG-S-GGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GR 326 (444)
T ss_pred cCeEEEehhhHHHhcCC-C-CCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CC
Confidence 46999999999987643 1 112333344556666666653 234678899887 44677777885 59
Q ss_pred ccccccCCCCCHHhHHHHHH
Q 002961 557 FDRKIFIPKPGLIGRMEILK 576 (862)
Q Consensus 557 fd~~I~~~~P~~~~R~~Il~ 576 (862)
|...+++...+.++-..||.
T Consensus 327 fPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 327 FPIRVELDALTKEDFERILT 346 (444)
T ss_pred CceEEEcccCCHHHHHHHHc
Confidence 99999999999999888874
No 218
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.19 E-value=2.5e-06 Score=86.03 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=33.8
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+.
T Consensus 22 ~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~ 60 (171)
T cd03228 22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60 (171)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE
Confidence 577788889999999999999999999998877666554
No 219
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.17 E-value=3.2e-06 Score=87.96 Aligned_cols=40 Identities=28% Similarity=0.315 Sum_probs=34.1
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+|+||+|||||+++|+|...+..|.+..
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 61 (207)
T PRK13539 22 SFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKL 61 (207)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 6777888889999999999999999999987766666543
No 220
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.17 E-value=2.1e-06 Score=86.07 Aligned_cols=117 Identities=28% Similarity=0.358 Sum_probs=74.3
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCc-----------------------eeeeecccchhhhcccchhhHHHHHHH
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN-----------------------FFSISASQFVEIYVGVGASRVRSLYQE 483 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~-----------------------~~~i~~~~~~~~~~gq~~~~l~~~f~~ 483 (862)
+.|..++|+||+|+||++++..++..+-.. +..+...... -.-..+.++.+...
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~---~~i~i~~ir~i~~~ 93 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK---KSIKIDQIREIIEF 93 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS---SSBSHHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc---chhhHHHHHHHHHH
Confidence 556778999999999999999999865221 1111111000 00112344555554
Q ss_pred HHh----cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccc
Q 002961 484 AKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDR 559 (862)
Q Consensus 484 a~~----~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~ 559 (862)
+.. ....|++||++|.+... ..|.||..|+.. +.++.+|.+|+.++.+.|.+++ |.-
T Consensus 94 ~~~~~~~~~~KviiI~~ad~l~~~--------------a~NaLLK~LEep--p~~~~fiL~t~~~~~il~TI~S--Rc~- 154 (162)
T PF13177_consen 94 LSLSPSEGKYKVIIIDEADKLTEE--------------AQNALLKTLEEP--PENTYFILITNNPSKILPTIRS--RCQ- 154 (162)
T ss_dssp CTSS-TTSSSEEEEEETGGGS-HH--------------HHHHHHHHHHST--TTTEEEEEEES-GGGS-HHHHT--TSE-
T ss_pred HHHHHhcCCceEEEeehHhhhhHH--------------HHHHHHHHhcCC--CCCEEEEEEECChHHChHHHHh--hce-
Confidence 432 23458999999998655 789999999955 4578899999999999999999 533
Q ss_pred cccCCC
Q 002961 560 KIFIPK 565 (862)
Q Consensus 560 ~I~~~~ 565 (862)
.+.|++
T Consensus 155 ~i~~~~ 160 (162)
T PF13177_consen 155 VIRFRP 160 (162)
T ss_dssp EEEE--
T ss_pred EEecCC
Confidence 555554
No 221
>PRK08116 hypothetical protein; Validated
Probab=98.16 E-value=2e-06 Score=93.34 Aligned_cols=123 Identities=20% Similarity=0.262 Sum_probs=70.2
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhc----ccchhhHHHHHHHHHhcCCceeEhHHHHHhh
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYV----GVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~----gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~ 501 (862)
+.+++|+|++|+|||+|+.+|+..+ +.++++++..++...+. +........+++.+. ..++|+|||+...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e- 190 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE- 190 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC-
Confidence 3469999999999999999999976 56777777766544321 111111223333332 3469999998432
Q ss_pred hhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCC-CC----CCccccCCCCc---cccccCCCCCH
Q 002961 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP-DI----LDPALVRPGRF---DRKIFIPKPGL 568 (862)
Q Consensus 502 ~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~-~~----Ld~aLlrpgRf---d~~I~~~~P~~ 568 (862)
...+. ....|...++..... +..+|.|||.+ +. ++..+.+ |+ ...|.++.|+.
T Consensus 191 --------~~t~~---~~~~l~~iin~r~~~-~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 191 --------RDTEW---AREKVYNIIDSRYRK-GLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred --------CCCHH---HHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 11222 334455555554333 33566666653 33 3555555 52 22455555554
No 222
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.16 E-value=9.2e-07 Score=97.85 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=46.4
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeeccc
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 464 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~ 464 (862)
+.++++.+.|++. . .++.+..++-+.|.||+|||||||+++|||-..+..|.|..+.
T Consensus 4 i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g 64 (338)
T COG3839 4 LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDG 64 (338)
T ss_pred EEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 5567778888764 2 2677777778999999999999999999999988888886543
No 223
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=2.1e-05 Score=96.05 Aligned_cols=102 Identities=36% Similarity=0.438 Sum_probs=78.8
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh---------hcccchhhHHHHHHHHHhcCCceeEhH
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI---------YVGVGASRVRSLYQEAKDNAPSVVFID 495 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~---------~~gq~~~~l~~~f~~a~~~~p~iL~iD 495 (862)
++..++|.||.|+|||-|+++||..+ ...++.++++++... |.|... ...+.+.++..+.+|++||
T Consensus 590 ~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~--gg~LteavrrrP~sVVLfd 667 (898)
T KOG1051|consen 590 PDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFE 667 (898)
T ss_pred CCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchh--HHHHHHHHhcCCceEEEEe
Confidence 44558999999999999999999976 567888888864432 444433 3678888888889999999
Q ss_pred HHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc---------CCCcEEEEEecCCCC
Q 002961 496 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPD 545 (862)
Q Consensus 496 Eid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~---------~~~~vlvI~tTN~~~ 545 (862)
|||..... .++.|++.+|... +-.+++||+|+|.-.
T Consensus 668 eIEkAh~~--------------v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~ 712 (898)
T KOG1051|consen 668 EIEKAHPD--------------VLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGS 712 (898)
T ss_pred chhhcCHH--------------HHHHHHHHHhcCccccCCCcEeeccceEEEEecccch
Confidence 99998765 7888888887532 125799999998643
No 224
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.14 E-value=3.1e-06 Score=85.95 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=34.4
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~ 61 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITL 61 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEE
Confidence 5778888899999999999999999999988776666543
No 225
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.14 E-value=5.2e-06 Score=83.92 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=33.4
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
++.+..++.++|.||||+|||||+++|+|...+..|.+.
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 60 (173)
T cd03246 22 SFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60 (173)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE
Confidence 566778888999999999999999999998876666554
No 226
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.13 E-value=4.3e-06 Score=84.53 Aligned_cols=39 Identities=31% Similarity=0.219 Sum_probs=33.2
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+.
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 58 (173)
T cd03230 20 SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58 (173)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 577788888999999999999999999998766666553
No 227
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.12 E-value=3.6e-06 Score=85.63 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=33.7
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+.
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~ 57 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 577788889999999999999999999998876666554
No 228
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.12 E-value=9.4e-06 Score=96.60 Aligned_cols=180 Identities=22% Similarity=0.228 Sum_probs=101.9
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh-----hcccchhhH-------HHHHHHHHhcCCceeE
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV-------RSLYQEAKDNAPSVVF 493 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~-----~~gq~~~~l-------~~~f~~a~~~~p~iL~ 493 (862)
...|+|+|++||||++++++|.... +.+++.++|+.+... .+|.....+ ...+. ....+.||
T Consensus 219 ~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~GtL~ 295 (534)
T TIGR01817 219 NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFE---LADGGTLF 295 (534)
T ss_pred CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCccc---ccCCCeEE
Confidence 4468999999999999999998764 568999999875332 122111100 00111 22356899
Q ss_pred hHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc--C-------CCcEEEEEecCCC-------CCCCccccCCCCc
Q 002961 494 IDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--G-------RGNVITIASTNRP-------DILDPALVRPGRF 557 (862)
Q Consensus 494 iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~--~-------~~~vlvI~tTN~~-------~~Ld~aLlrpgRf 557 (862)
||||+.+... ....|+..++.-. . ..++-+|++|+.. ..+.+.|.. |+
T Consensus 296 ldei~~L~~~--------------~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl 359 (534)
T TIGR01817 296 LDEIGEISPA--------------FQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RI 359 (534)
T ss_pred EechhhCCHH--------------HHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--Hh
Confidence 9999998654 5566666665421 1 1247788887643 122333333 44
Q ss_pred c-ccccCCCCC--HHhHHHHHHHHHccC----CCCCccc---HHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHH
Q 002961 558 D-RKIFIPKPG--LIGRMEILKVHARKK----PMADDVD---YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 627 (862)
Q Consensus 558 d-~~I~~~~P~--~~~R~~Il~~~l~~~----~~~~~~d---l~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~e 627 (862)
. ..|.+|+.. .++...|+.+++... .....++ +..|....---+.++|.++++.++.. .....|+.+
T Consensus 360 ~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~---~~~~~I~~~ 436 (534)
T TIGR01817 360 NVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATL---SRSGTITRS 436 (534)
T ss_pred cCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHh---CCCCcccHH
Confidence 3 245565543 355556666666432 1111222 33333333222456777777776543 334578888
Q ss_pred HHH
Q 002961 628 DLL 630 (862)
Q Consensus 628 dl~ 630 (862)
|+.
T Consensus 437 ~l~ 439 (534)
T TIGR01817 437 DFS 439 (534)
T ss_pred HCc
Confidence 864
No 229
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.12 E-value=0.00018 Score=87.58 Aligned_cols=133 Identities=17% Similarity=0.102 Sum_probs=87.5
Q ss_pred ccccCcccccccc----c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhh------------h
Q 002961 408 YLERGVDVKFSDM----Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI------------Y 469 (862)
Q Consensus 408 l~~~~~s~~~~~~----~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~------------~ 469 (862)
+.++++++.|+.. . .++.+++++.|+|+|++|||||||+|.|.|-..+..|.|......-. |
T Consensus 472 I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~ 551 (709)
T COG2274 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGY 551 (709)
T ss_pred EEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeE
Confidence 6677888888642 1 27778888889999999999999999999999888888765542111 3
Q ss_pred cccchhhH-HHHHHHHHhcCCceeEhHHHHHhhhhc-----------------cC--cCCCCchhHHHHHHHHHHhhccc
Q 002961 470 VGVGASRV-RSLYQEAKDNAPSVVFIDELDAVGRER-----------------GL--IKGSGGQERDATLNQLLVCLDGF 529 (862)
Q Consensus 470 ~gq~~~~l-~~~f~~a~~~~p~iL~iDEid~l~~~~-----------------~~--~~~Sgge~~r~~l~~LL~~Ld~~ 529 (862)
+.|..-.. .++.++.....|.. -.+|+-..+... +. ..=|||++.|..+++.+ .
T Consensus 552 V~Q~~~Lf~gSI~eNi~l~~p~~-~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaL-----l 625 (709)
T COG2274 552 VLQDPFLFSGSIRENIALGNPEA-TDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARAL-----L 625 (709)
T ss_pred EcccchhhcCcHHHHHhcCCCCC-CHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHh-----c
Confidence 33433222 66777777777753 344443322110 00 11199999999999887 4
Q ss_pred cCCCcEEEEEecCCCCC
Q 002961 530 EGRGNVITIASTNRPDI 546 (862)
Q Consensus 530 ~~~~~vlvI~tTN~~~~ 546 (862)
.++.-+++..+|+..|.
T Consensus 626 ~~P~ILlLDEaTSaLD~ 642 (709)
T COG2274 626 SKPKILLLDEATSALDP 642 (709)
T ss_pred cCCCEEEEeCcccccCH
Confidence 44444555677766554
No 230
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.10 E-value=8.1e-06 Score=91.08 Aligned_cols=133 Identities=21% Similarity=0.256 Sum_probs=79.5
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh-----hcccchhhH-------HHHHHHHHhcCCcee
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV-------RSLYQEAKDNAPSVV 492 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~-----~~gq~~~~l-------~~~f~~a~~~~p~iL 492 (862)
.+..|+|+|++||||+++|++|.... +.+++.++|..+... .+|...... ...+ .....+.|
T Consensus 28 ~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l---~~a~gGtL 104 (326)
T PRK11608 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRF---ERADGGTL 104 (326)
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCch---hccCCCeE
Confidence 34568999999999999999997643 468999999875322 222211000 1112 22345689
Q ss_pred EhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc--C-------CCcEEEEEecCCC-------CCCCccccCCCC
Q 002961 493 FIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--G-------RGNVITIASTNRP-------DILDPALVRPGR 556 (862)
Q Consensus 493 ~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~--~-------~~~vlvI~tTN~~-------~~Ld~aLlrpgR 556 (862)
||||++.+... ....|+..++.-. . ..++.+|++|+.. ..+.+.|.. |
T Consensus 105 ~l~~i~~L~~~--------------~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~ 168 (326)
T PRK11608 105 FLDELATAPML--------------VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--R 168 (326)
T ss_pred EeCChhhCCHH--------------HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--h
Confidence 99999998654 5566666665321 1 1247788887652 234555655 6
Q ss_pred cc-ccccCCCCCH--HhHHHHHHHHH
Q 002961 557 FD-RKIFIPKPGL--IGRMEILKVHA 579 (862)
Q Consensus 557 fd-~~I~~~~P~~--~~R~~Il~~~l 579 (862)
|. ..|.+|+... ++...++.+++
T Consensus 169 l~~~~i~lPpLReR~eDI~~L~~~fl 194 (326)
T PRK11608 169 LAFDVVQLPPLRERQSDIMLMAEHFA 194 (326)
T ss_pred cCCCEEECCChhhhhhhHHHHHHHHH
Confidence 63 3455554422 34455666655
No 231
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.09 E-value=2.6e-06 Score=95.20 Aligned_cols=191 Identities=21% Similarity=0.230 Sum_probs=105.4
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchh----hhccc---chhh-H-HHHHHHHHhcCCceeEhHH
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE----IYVGV---GASR-V-RSLYQEAKDNAPSVVFIDE 496 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~----~~~gq---~~~~-l-~~~f~~a~~~~p~iL~iDE 496 (862)
.+..-+|+|+|.||+|||.|++.++..... .++.+...... ..+.. +.+. + ... +.....+|++|||
T Consensus 54 ~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr-~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGa---lvlad~GiccIDe 129 (331)
T PF00493_consen 54 IRGNIHILLVGDPGTGKSQLLKYVAKLAPR-SVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGA---LVLADGGICCIDE 129 (331)
T ss_dssp E--S--EEEECSCHHCHHHHHHCCCCT-SS-EEEEECCGSTCCCCCEEECCCGGTSSECEEE-H---HHHCTTSEEEECT
T ss_pred cccccceeeccchhhhHHHHHHHHHhhCCc-eEEECCCCcccCCccceeccccccceeEEeCCc---hhcccCceeeecc
Confidence 455667999999999999999988665433 33333222110 01100 0000 0 001 1123457999999
Q ss_pred HHHhhhhccCcCCCCchhHHHHHHHHHHhhccc----cC-------CCcEEEEEecCCCC-------------CCCcccc
Q 002961 497 LDAVGRERGLIKGSGGQERDATLNQLLVCLDGF----EG-------RGNVITIASTNRPD-------------ILDPALV 552 (862)
Q Consensus 497 id~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~----~~-------~~~vlvI~tTN~~~-------------~Ld~aLl 552 (862)
+|.+... ....|++.|+.- .. +...-|++++|+.. .+++.|+
T Consensus 130 ~dk~~~~--------------~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LL 195 (331)
T PF00493_consen 130 FDKMKED--------------DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLL 195 (331)
T ss_dssp TTT--CH--------------HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCH
T ss_pred cccccch--------------HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhH
Confidence 9988543 455666666641 11 24578999998765 3788999
Q ss_pred CCCCccccccC-CCCCHHhHHHHHHHHHccCCC----------------CCcc--cHHHHHh------------------
Q 002961 553 RPGRFDRKIFI-PKPGLIGRMEILKVHARKKPM----------------ADDV--DYLAVAS------------------ 595 (862)
Q Consensus 553 rpgRfd~~I~~-~~P~~~~R~~Il~~~l~~~~~----------------~~~~--dl~~lA~------------------ 595 (862)
+ |||.++.+ ..|+.+.-..|.++.+..... ..+. .+...++
T Consensus 196 S--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~ 273 (331)
T PF00493_consen 196 S--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINY 273 (331)
T ss_dssp C--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHH
T ss_pred h--hcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHH
Confidence 9 99988665 566766666666555433210 0000 0111111
Q ss_pred ------------hcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHH
Q 002961 596 ------------MTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 636 (862)
Q Consensus 596 ------------~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~ 636 (862)
.....+.+.|+.+++.|...|..+.+..|+.+|+..|+...
T Consensus 274 Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~ 326 (331)
T PF00493_consen 274 YVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLF 326 (331)
T ss_dssp HCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHH
T ss_pred HHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHH
Confidence 01235677889999999999999999999999999998743
No 232
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.09 E-value=6.3e-06 Score=88.89 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=43.8
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 13 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~ 71 (257)
T PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA 71 (257)
T ss_pred EEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 5666777777542 2 26777888889999999999999999999998777777654
No 233
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.09 E-value=8.8e-06 Score=85.31 Aligned_cols=49 Identities=24% Similarity=0.224 Sum_probs=40.8
Q ss_pred cccccCccccccccc----cccccccCCeEEEECCCCCchhHHHHHHHhhccC
Q 002961 407 QYLERGVDVKFSDMY----RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV 455 (862)
Q Consensus 407 ~l~~~~~s~~~~~~~----~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~ 455 (862)
.+.++++++.+.+.. .++.+.++.+..|+||||+|||||++.++++..+
T Consensus 31 li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~p 83 (257)
T COG1119 31 LIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP 83 (257)
T ss_pred eEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCC
Confidence 367788888776632 3888999999999999999999999999997644
No 234
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.07 E-value=3.9e-06 Score=85.25 Aligned_cols=39 Identities=28% Similarity=0.338 Sum_probs=33.4
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+.
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 58 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 577788888999999999999999999998776666553
No 235
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.06 E-value=4.6e-06 Score=82.79 Aligned_cols=112 Identities=24% Similarity=0.243 Sum_probs=66.6
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccch--h----------hhccc--chhhHHHHHHHHHhcC
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV--E----------IYVGV--GASRVRSLYQEAKDNA 488 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~--~----------~~~gq--~~~~l~~~f~~a~~~~ 488 (862)
++.+..+..++|+|+||+|||||+++|++.+.+..|.+...... . .|..+ +....+-.+..+....
T Consensus 19 ~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 19 SLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLN 98 (157)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcC
Confidence 56677888899999999999999999999987777766543310 0 02111 1111233344445567
Q ss_pred CceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCC
Q 002961 489 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD 548 (862)
Q Consensus 489 p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld 548 (862)
|.++++||...-+.. ..+..+..++..+ ... +..++.+|+..+.++
T Consensus 99 ~~i~ilDEp~~~lD~----------~~~~~l~~~l~~~---~~~-~~tii~~sh~~~~~~ 144 (157)
T cd00267 99 PDLLLLDEPTSGLDP----------ASRERLLELLREL---AEE-GRTVIIVTHDPELAE 144 (157)
T ss_pred CCEEEEeCCCcCCCH----------HHHHHHHHHHHHH---HHC-CCEEEEEeCCHHHHH
Confidence 889999998543321 2222344444333 222 346677776655433
No 236
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.05 E-value=1.2e-05 Score=82.37 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=36.8
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeeccc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 464 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~ 464 (862)
++.+++++-+.|.||||+|||||+|+|+|++.+..|.+....
T Consensus 21 sl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g 62 (259)
T COG4559 21 SLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNG 62 (259)
T ss_pred ceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCC
Confidence 577788888999999999999999999999998888876543
No 237
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1.7e-05 Score=79.98 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=36.6
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+|.+..++-+.|.||||+|||||+++|||-+.+..|++.+.
T Consensus 22 ~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~ 62 (209)
T COG4133 22 SFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62 (209)
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEec
Confidence 56778888899999999999999999999999988888654
No 238
>PRK09183 transposase/IS protein; Provisional
Probab=98.03 E-value=6.7e-06 Score=88.76 Aligned_cols=74 Identities=31% Similarity=0.427 Sum_probs=47.5
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhccc-chhhHHHHHHHHHhcCCceeEhHHHHHh
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV-GASRVRSLYQEAKDNAPSVVFIDELDAV 500 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~gq-~~~~l~~~f~~a~~~~p~iL~iDEid~l 500 (862)
+..+.+++|+||+|+|||+|+.+|+..+ +..+.+++..++...+... ....+..++... ...+++++|||++..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 4567789999999999999999997754 4455566655544322111 111233444433 245679999999654
No 239
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.03 E-value=1.2e-05 Score=84.17 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=43.6
Q ss_pred ccccCccccccccc--------cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSDMY--------RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~~~--------~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++++|+++.|+... .++.+..+..+.|+|++|||||||+++|+|...+..|.|...
T Consensus 4 l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~ 67 (252)
T COG1124 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLD 67 (252)
T ss_pred EEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEEC
Confidence 44556666665321 378888899999999999999999999999888777777544
No 240
>PRK06526 transposase; Provisional
Probab=98.03 E-value=4.6e-06 Score=89.69 Aligned_cols=72 Identities=25% Similarity=0.383 Sum_probs=45.3
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhccc-chhhHHHHHHHHHhcCCceeEhHHHHHh
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV-GASRVRSLYQEAKDNAPSVVFIDELDAV 500 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~gq-~~~~l~~~f~~a~~~~p~iL~iDEid~l 500 (862)
..+.+++|+||+|||||+|+.+|+..+ +..+.++++.++....... ....+...+..+ ..+++|+|||++..
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~ 171 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYI 171 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccC
Confidence 356789999999999999999998865 4455555555444332111 011122222222 34679999999765
No 241
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.03 E-value=2.5e-05 Score=92.34 Aligned_cols=169 Identities=20% Similarity=0.196 Sum_probs=94.7
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh-----hcccchhhH-------HHHHHHHHhcCCceeE
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV-------RSLYQEAKDNAPSVVF 493 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~-----~~gq~~~~l-------~~~f~~a~~~~p~iL~ 493 (862)
+..|+|+|++||||++++++|.... +.+++.++|..+... .+|.....+ ...|+ ....+.||
T Consensus 210 ~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~---~a~gGtL~ 286 (509)
T PRK05022 210 DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFE---LADGGTLF 286 (509)
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchh---hcCCCEEE
Confidence 3468999999999999999998754 568999999875432 233211100 11222 23456799
Q ss_pred hHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc---------CCCcEEEEEecCCCC-------CCCccccCCCCc
Q 002961 494 IDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPD-------ILDPALVRPGRF 557 (862)
Q Consensus 494 iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~---------~~~~vlvI~tTN~~~-------~Ld~aLlrpgRf 557 (862)
||||+.+... ....|+..++.-. ...++-+|++||..- .+.+.|.. |+
T Consensus 287 ldeI~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl 350 (509)
T PRK05022 287 LDEIGELPLA--------------LQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RL 350 (509)
T ss_pred ecChhhCCHH--------------HHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHh--cc
Confidence 9999998654 5566666665321 112578888886531 23333333 33
Q ss_pred cccccCCCCCHHh----HHHHHHHHHccC----C-CCCccc---HHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 002961 558 DRKIFIPKPGLIG----RMEILKVHARKK----P-MADDVD---YLAVASMTDGMVGAELANIVEVAAINMM 617 (862)
Q Consensus 558 d~~I~~~~P~~~~----R~~Il~~~l~~~----~-~~~~~d---l~~lA~~t~G~s~adI~~lv~~A~~~A~ 617 (862)
. .+.+..|...+ ...++.+++... . -...+. +..|....---+.++|+++++.|+..+.
T Consensus 351 ~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 351 S-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred c-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 3 23344444434 334555554322 1 111222 2233332222356788888888876543
No 242
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.02 E-value=1.8e-05 Score=87.76 Aligned_cols=47 Identities=28% Similarity=0.275 Sum_probs=29.6
Q ss_pred EEEEecCC------------CCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCCCC
Q 002961 536 ITIASTNR------------PDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA 585 (862)
Q Consensus 536 lvI~tTN~------------~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~~~ 585 (862)
+||.+||+ |.-+|..|+. |+= +|...+++.++..+|++.++....+.
T Consensus 309 iiIlATNRg~~~irGt~~~sphGiP~DlLD--Rll-II~t~py~~~ei~~Il~iR~~~E~v~ 367 (398)
T PF06068_consen 309 IIILATNRGITKIRGTDIISPHGIPLDLLD--RLL-IIRTKPYSEEEIKQILKIRAKEEDVE 367 (398)
T ss_dssp EEEEEES-SEEE-BTTS-EEETT--HHHHT--TEE-EEEE----HHHHHHHHHHHHHHCT--
T ss_pred EEEEecCceeeeccCccCcCCCCCCcchHh--hcE-EEECCCCCHHHHHHHHHhhhhhhcCc
Confidence 77777773 3457778887 653 77888999999999999999776544
No 243
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.02 E-value=8.6e-06 Score=86.45 Aligned_cols=40 Identities=28% Similarity=0.166 Sum_probs=34.7
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 60 (236)
T TIGR03864 21 SFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISV 60 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 6778888999999999999999999999988777776643
No 244
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.02 E-value=5.9e-05 Score=80.06 Aligned_cols=157 Identities=20% Similarity=0.225 Sum_probs=103.6
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc-c--Cceeeeecccc-------------hhh-hc-------ccc-hhhHHHHHHHH
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA-G--VNFFSISASQF-------------VEI-YV-------GVG-ASRVRSLYQEA 484 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l-~--~~~~~i~~~~~-------------~~~-~~-------gq~-~~~l~~~f~~a 484 (862)
.+++++||+|+||-|.+-+|..++ | ..-..+....+ ... ++ |.. .--++.++..+
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 468999999999999888888765 2 11111111000 000 11 111 11235555555
Q ss_pred HhcC---------CceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCC
Q 002961 485 KDNA---------PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPG 555 (862)
Q Consensus 485 ~~~~---------p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpg 555 (862)
.+.. -.+++|.|+|.+..+ +...|-..|+.+.+ ++-+|..+|....+=+++++++
T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT~d--------------AQ~aLRRTMEkYs~--~~RlIl~cns~SriIepIrSRC 178 (351)
T KOG2035|consen 115 AQTQQIETQGQRPFKVVVINEADELTRD--------------AQHALRRTMEKYSS--NCRLILVCNSTSRIIEPIRSRC 178 (351)
T ss_pred HhhcchhhccccceEEEEEechHhhhHH--------------HHHHHHHHHHHHhc--CceEEEEecCcccchhHHhhhe
Confidence 4432 247889999888654 67788888888765 5667777799999999999844
Q ss_pred CccccccCCCCCHHhHHHHHHHHHccCCCCCc-ccHHHHHhhcCCCCHHHH
Q 002961 556 RFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDGMVGAEL 605 (862)
Q Consensus 556 Rfd~~I~~~~P~~~~R~~Il~~~l~~~~~~~~-~dl~~lA~~t~G~s~adI 605 (862)
..|.+|.|+.++...++...+.+..+.-+ .-+..+|+.+.|.-.+.|
T Consensus 179 ---l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAl 226 (351)
T KOG2035|consen 179 ---LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRAL 226 (351)
T ss_pred ---eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHH
Confidence 36899999999999999988876655433 335667777777655544
No 245
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.01 E-value=3.7e-05 Score=89.84 Aligned_cols=135 Identities=20% Similarity=0.241 Sum_probs=75.6
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccc---hhhhcccchhhHHHHHHH--HHhcCCceeEhHHHHHh
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF---VEIYVGVGASRVRSLYQE--AKDNAPSVVFIDELDAV 500 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~---~~~~~gq~~~~l~~~f~~--a~~~~p~iL~iDEid~l 500 (862)
.+..-+|||+|.||||||.|++.+...+..-.+.---+.- .+.|+......-+-+++. +.....++..|||+|++
T Consensus 459 ~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM 538 (804)
T KOG0478|consen 459 FRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKM 538 (804)
T ss_pred ccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhh
Confidence 3444579999999999999999999876543322111110 111221111100111111 11123468899999998
Q ss_pred hhhccCcCCCCchhHHHHHHHHHHhhccc-----------cCCCcEEEEEecCCCCC-------------CCccccCCCC
Q 002961 501 GRERGLIKGSGGQERDATLNQLLVCLDGF-----------EGRGNVITIASTNRPDI-------------LDPALVRPGR 556 (862)
Q Consensus 501 ~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~-----------~~~~~vlvI~tTN~~~~-------------Ld~aLlrpgR 556 (862)
... +-+.|.+.|+.- .-+...-|+++.|+... |+|.|++ |
T Consensus 539 ~dS--------------trSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--R 602 (804)
T KOG0478|consen 539 SDS--------------TRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--R 602 (804)
T ss_pred hHH--------------HHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--h
Confidence 543 333444444420 11345678888885432 7899999 9
Q ss_pred ccccc-cCCCCCHHhHHHHHH
Q 002961 557 FDRKI-FIPKPGLIGRMEILK 576 (862)
Q Consensus 557 fd~~I-~~~~P~~~~R~~Il~ 576 (862)
||.++ -+..||...-+.|..
T Consensus 603 FDLIylllD~~DE~~Dr~La~ 623 (804)
T KOG0478|consen 603 FDLIFLLLDKPDERSDRRLAD 623 (804)
T ss_pred hcEEEEEecCcchhHHHHHHH
Confidence 99765 455677653444433
No 246
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.01 E-value=7.5e-06 Score=85.90 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=34.4
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 63 (220)
T cd03293 24 SLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLV 63 (220)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 5777888889999999999999999999988777776644
No 247
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.01 E-value=1.1e-05 Score=83.17 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=33.9
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhc--cCceeeee
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEA--GVNFFSIS 461 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l--~~~~~~i~ 461 (862)
++.+..+..++|.||||+|||||+++|+|.. .+..|.+.
T Consensus 29 ~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~ 69 (194)
T cd03213 29 SGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVL 69 (194)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEE
Confidence 6777888899999999999999999999988 77666653
No 248
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.00 E-value=1.3e-05 Score=80.51 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=34.1
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 21 ~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (166)
T cd03223 21 SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60 (166)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 5777888899999999999999999999988766665543
No 249
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.00 E-value=5.1e-05 Score=85.69 Aligned_cols=182 Identities=18% Similarity=0.173 Sum_probs=109.8
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhc-----cCceeeeecccchhh---h-----------cccchh-hHHHHHH-
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEI---Y-----------VGVGAS-RVRSLYQ- 482 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l-----~~~~~~i~~~~~~~~---~-----------~gq~~~-~l~~~f~- 482 (862)
+...-++.+.+.|.||+|||.++.-+...+ .+..++++|..+... | .+.+.+ .....|+
T Consensus 170 le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~ 249 (529)
T KOG2227|consen 170 LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEK 249 (529)
T ss_pred hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 334556678999999999999888665543 234467777653221 1 111111 1122222
Q ss_pred HHHhc-CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCcccc----CCCCc
Q 002961 483 EAKDN-APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALV----RPGRF 557 (862)
Q Consensus 483 ~a~~~-~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLl----rpgRf 557 (862)
..... .+-++++||+|.++.+... ++..+ -++..+ .+..+++|+..|..|.-|..|- +.+.-
T Consensus 250 h~~q~k~~~llVlDEmD~L~tr~~~-----------vLy~l-Fewp~l-p~sr~iLiGiANslDlTdR~LprL~~~~~~~ 316 (529)
T KOG2227|consen 250 HTKQSKFMLLLVLDEMDHLITRSQT-----------VLYTL-FEWPKL-PNSRIILIGIANSLDLTDRFLPRLNLDLTIK 316 (529)
T ss_pred HHhcccceEEEEechhhHHhhcccc-----------eeeee-hhcccC-CcceeeeeeehhhhhHHHHHhhhhhhccCCC
Confidence 22223 2567999999999854211 22221 223333 3568899999999887554332 12334
Q ss_pred cccccCCCCCHHhHHHHHHHHHccCCCCCc--ccHHHHHhhcCCCCH--HHHHHHHHHHHHHHHH
Q 002961 558 DRKIFIPKPGLIGRMEILKVHARKKPMADD--VDYLAVASMTDGMVG--AELANIVEVAAINMMR 618 (862)
Q Consensus 558 d~~I~~~~P~~~~R~~Il~~~l~~~~~~~~--~dl~~lA~~t~G~s~--adI~~lv~~A~~~A~~ 618 (862)
...+.|++|+.++..+||...+........ ..+..+|+...|.|| +.+-.+|+.|.-.+..
T Consensus 317 P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~E~ 381 (529)
T KOG2227|consen 317 PKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIAEI 381 (529)
T ss_pred CceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999977654433 345567777777776 2333455555444443
No 250
>PF13173 AAA_14: AAA domain
Probab=98.00 E-value=2e-05 Score=75.65 Aligned_cols=69 Identities=28% Similarity=0.353 Sum_probs=44.1
Q ss_pred CeEEEECCCCCchhHHHHHHHhhcc--CceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAG--VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAV 500 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~--~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l 500 (862)
.-++|+||.|+||||+++.++..+. ....++++.+........ .. +...+.......+.+++|||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLAD-PD-LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhh-hh-hHHHHHHhhccCCcEEEEehhhhh
Confidence 3478999999999999999998775 667777766533211110 00 112222211124568999999887
No 251
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.00 E-value=1.8e-05 Score=78.43 Aligned_cols=40 Identities=30% Similarity=0.275 Sum_probs=35.3
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.++.++.++|+||+|||||||+|++|.-..+..|.+.+
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f 62 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLF 62 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEE
Confidence 5778999999999999999999999999988877777643
No 252
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.99 E-value=1.5e-05 Score=96.86 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=43.2
Q ss_pred cccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 409 LERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 409 ~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|...+..|.|...
T Consensus 3 ~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~ 61 (638)
T PRK10636 3 VFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFP 61 (638)
T ss_pred EEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEec
Confidence 445666666542 2 367888889999999999999999999999888877777543
No 253
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.99 E-value=1.6e-05 Score=91.35 Aligned_cols=178 Identities=24% Similarity=0.310 Sum_probs=105.2
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh-----hcccchhhH-------HHHHHHHHhcCCceeEh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV-------RSLYQEAKDNAPSVVFI 494 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~-----~~gq~~~~l-------~~~f~~a~~~~p~iL~i 494 (862)
..|+|+|.+||||-.+|++|-... +.||+.++|+.+... .+|.....+ ...|+ ....+.|||
T Consensus 165 a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE---~A~GGTLfL 241 (464)
T COG2204 165 ASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFE---QANGGTLFL 241 (464)
T ss_pred CCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCccee---EcCCceEEe
Confidence 457999999999999999998754 569999999876543 344322211 11232 234567999
Q ss_pred HHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc-----C----CCcEEEEEecCCC--CC-----CCccccCCCCcc
Q 002961 495 DELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----G----RGNVITIASTNRP--DI-----LDPALVRPGRFD 558 (862)
Q Consensus 495 DEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~-----~----~~~vlvI~tTN~~--~~-----Ld~aLlrpgRfd 558 (862)
|||..+.-. +...||..|..-. + +-+|-||++||.. +. +-+.|.. |+.
T Consensus 242 DEI~~mpl~--------------~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn 305 (464)
T COG2204 242 DEIGEMPLE--------------LQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN 305 (464)
T ss_pred eccccCCHH--------------HHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc
Confidence 999887543 6677777776311 1 1257899999763 11 2233333 444
Q ss_pred ccccCCCCCHHhHH----HHHHHHHccC-----CCCCcccHHHHHhhcCCCCH---HHHHHHHHHHHHHHHHhCCcccCH
Q 002961 559 RKIFIPKPGLIGRM----EILKVHARKK-----PMADDVDYLAVASMTDGMVG---AELANIVEVAAINMMRDGRTEITT 626 (862)
Q Consensus 559 ~~I~~~~P~~~~R~----~Il~~~l~~~-----~~~~~~dl~~lA~~t~G~s~---adI~~lv~~A~~~A~~~~~~~It~ 626 (862)
++.+..|...+|. -++.+++... .-...+.-..+.....--.| ++|+|+++.++ .......|+.
T Consensus 306 -V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~---il~~~~~i~~ 381 (464)
T COG2204 306 -VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAV---ILSEGPEIEV 381 (464)
T ss_pred -cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHH---hcCCccccch
Confidence 5666666655544 3555555432 22234555555555443344 44555555444 3444556776
Q ss_pred HHHH
Q 002961 627 DDLL 630 (862)
Q Consensus 627 edl~ 630 (862)
+++.
T Consensus 382 ~~l~ 385 (464)
T COG2204 382 EDLP 385 (464)
T ss_pred hhcc
Confidence 6664
No 254
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.00076 Score=77.78 Aligned_cols=57 Identities=19% Similarity=0.171 Sum_probs=49.4
Q ss_pred ccccCccccccccc------cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeeccc
Q 002961 408 YLERGVDVKFSDMY------RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 464 (862)
Q Consensus 408 l~~~~~s~~~~~~~------~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~ 464 (862)
++.+|+++.|++.. .++.+..+++|.|.|++|||||||++.|++...+..|++..+.
T Consensus 337 l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g 399 (573)
T COG4987 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNG 399 (573)
T ss_pred eeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECC
Confidence 77889999997632 3888899999999999999999999999999988888886654
No 255
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.98 E-value=1.4e-05 Score=82.43 Aligned_cols=41 Identities=20% Similarity=0.095 Sum_probs=35.2
Q ss_pred cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 422 RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 422 ~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
.++.+.++..++|.|+||+|||||+++|+|...+..|.+..
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYY 59 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 36778888999999999999999999999988777676654
No 256
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=97.97 E-value=3.6e-05 Score=90.96 Aligned_cols=98 Identities=24% Similarity=0.387 Sum_probs=63.8
Q ss_pred CCeEEEECCCCCchhHHHHHHHhh-----------ccCceeeeecccchhh-----hcccchhhH--------HHHHHHH
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGE-----------AGVNFFSISASQFVEI-----YVGVGASRV--------RSLYQEA 484 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~-----------l~~~~~~i~~~~~~~~-----~~gq~~~~l--------~~~f~~a 484 (862)
+..|+|+|++||||+++|++|-.. .+.+|+.++|+.+... .+|.....+ ..+|+.
T Consensus 242 ~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~- 320 (538)
T PRK15424 242 SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI- 320 (538)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhc-
Confidence 456899999999999999999765 3568999999875432 223211100 123332
Q ss_pred HhcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc-----C----CCcEEEEEecCC
Q 002961 485 KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----G----RGNVITIASTNR 543 (862)
Q Consensus 485 ~~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~-----~----~~~vlvI~tTN~ 543 (862)
...+.||||||+.+... ....|+..|+.-. + ..++-+|++||.
T Consensus 321 --A~gGTLfLdeI~~Lp~~--------------~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~ 372 (538)
T PRK15424 321 --AHGGTLFLDEIGEMPLP--------------LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHC 372 (538)
T ss_pred --cCCCEEEEcChHhCCHH--------------HHHHHHhhhhcCeEEecCCCceeccceEEEEecCC
Confidence 23457999999998654 5666776665421 1 124678888865
No 257
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.97 E-value=1.3e-05 Score=95.17 Aligned_cols=131 Identities=16% Similarity=0.169 Sum_probs=79.2
Q ss_pred ccccCccccccc---cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccc-----------hhhhcc
Q 002961 408 YLERGVDVKFSD---MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF-----------VEIYVG 471 (862)
Q Consensus 408 l~~~~~s~~~~~---~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~-----------~~~~~g 471 (862)
+..+++++.|++ .+ .++.++++..++|+||+|+|||||+++|+|...+..|.+..... .-.|+.
T Consensus 335 I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~ 414 (529)
T TIGR02868 335 LELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFA 414 (529)
T ss_pred EEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEc
Confidence 667788888854 22 27788888899999999999999999999999888777754431 011455
Q ss_pred cchhhH-HHHHHHHHhcCCceeEhHHH-------------HHh-------hhhccCcCCCCchhHHHHHHHHHHhhcccc
Q 002961 472 VGASRV-RSLYQEAKDNAPSVVFIDEL-------------DAV-------GRERGLIKGSGGQERDATLNQLLVCLDGFE 530 (862)
Q Consensus 472 q~~~~l-~~~f~~a~~~~p~iL~iDEi-------------d~l-------~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~ 530 (862)
|....+ .++.+++....|+. --+++ ..+ .+..+ ..=|||++.|..+++.+ +.
T Consensus 415 Q~~~lF~~TI~eNI~~g~~~~-~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G-~~LSGGQrQRiaiARal-----l~ 487 (529)
T TIGR02868 415 QDAHLFDTTVRDNLRLGRPDA-TDEELWAALERVGLADWLRSLPDGLDTVLGEGG-ARLSGGERQRLALARAL-----LA 487 (529)
T ss_pred cCcccccccHHHHHhccCCCC-CHHHHHHHHHHcCCHHHHHhCcccccchhcccc-CcCCHHHHHHHHHHHHH-----hc
Confidence 543322 33444444333321 11222 111 11111 11189999999999887 33
Q ss_pred CCCcEEEEEecCCCC
Q 002961 531 GRGNVITIASTNRPD 545 (862)
Q Consensus 531 ~~~~vlvI~tTN~~~ 545 (862)
++.-+++..+|...|
T Consensus 488 ~~~iliLDE~TSaLD 502 (529)
T TIGR02868 488 DAPILLLDEPTEHLD 502 (529)
T ss_pred CCCEEEEeCCcccCC
Confidence 333344456665433
No 258
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.97 E-value=1e-05 Score=91.42 Aligned_cols=55 Identities=25% Similarity=0.257 Sum_probs=41.6
Q ss_pred ccccCccccc-cc--cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKF-SD--MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~-~~--~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.| ++ .+ .++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 4 l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~ 63 (356)
T PRK11650 4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWI 63 (356)
T ss_pred EEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEE
Confidence 4455666666 32 11 36777788889999999999999999999988777776643
No 259
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.96 E-value=2.9e-05 Score=86.67 Aligned_cols=61 Identities=23% Similarity=0.280 Sum_probs=43.2
Q ss_pred HHHHHHHhhcc--ccC-------CCcEEEEEecCCCC-------CCCccccCCCCccccccCCCC-CHHhHHHHHHHHHc
Q 002961 518 TLNQLLVCLDG--FEG-------RGNVITIASTNRPD-------ILDPALVRPGRFDRKIFIPKP-GLIGRMEILKVHAR 580 (862)
Q Consensus 518 ~l~~LL~~Ld~--~~~-------~~~vlvI~tTN~~~-------~Ld~aLlrpgRfd~~I~~~~P-~~~~R~~Il~~~l~ 580 (862)
.++.||..++. +.. .-..+||++||..+ ....+|++ |+. .|.+|.| +..+-.+|.+..+.
T Consensus 252 ~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~~ 328 (361)
T smart00763 252 FLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLLR 328 (361)
T ss_pred HHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHhc
Confidence 66777777663 111 12368899999873 56789999 887 8888877 56777888887775
Q ss_pred c
Q 002961 581 K 581 (862)
Q Consensus 581 ~ 581 (862)
.
T Consensus 329 ~ 329 (361)
T smart00763 329 N 329 (361)
T ss_pred c
Confidence 4
No 260
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.96 E-value=1.2e-05 Score=90.69 Aligned_cols=55 Identities=24% Similarity=0.268 Sum_probs=42.8
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++. + .++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 5 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i 63 (353)
T TIGR03265 5 LSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQ 63 (353)
T ss_pred EEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEE
Confidence 4556666666542 1 36777788889999999999999999999988777776644
No 261
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.96 E-value=2.2e-05 Score=84.38 Aligned_cols=56 Identities=23% Similarity=0.243 Sum_probs=43.2
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++. + .++.+..+..++|.||||+|||||+++|+|.+.+..|.+.+.
T Consensus 5 l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~ 64 (251)
T PRK09544 5 VSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRN 64 (251)
T ss_pred EEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 4455666655431 2 267888889999999999999999999999988777777543
No 262
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.95 E-value=7.4e-06 Score=85.45 Aligned_cols=40 Identities=30% Similarity=0.274 Sum_probs=34.7
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 59 (213)
T cd03259 20 SLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI 59 (213)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 5777888889999999999999999999988777776644
No 263
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.95 E-value=1.5e-05 Score=82.90 Aligned_cols=41 Identities=22% Similarity=0.118 Sum_probs=35.5
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+.+.
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFD 60 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 67778888899999999999999999999887777776543
No 264
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.95 E-value=1.8e-05 Score=82.85 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=43.6
Q ss_pred ccccCccccccc--cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD--MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~--~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++ .+ .++.+..+..++|.|+||+|||||+++|+|...+..|.+...
T Consensus 12 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 71 (214)
T PRK13543 12 LAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQID 71 (214)
T ss_pred EEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEEC
Confidence 556666666653 22 367888889999999999999999999999887777766543
No 265
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.95 E-value=1.6e-05 Score=83.48 Aligned_cols=40 Identities=25% Similarity=0.105 Sum_probs=34.7
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 59 (220)
T cd03265 20 SFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATV 59 (220)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 5777888889999999999999999999988777776654
No 266
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.95 E-value=4.6e-05 Score=92.69 Aligned_cols=183 Identities=22% Similarity=0.268 Sum_probs=100.7
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh-----hcccchh----hHHHHHHHHHhcCCceeEhH
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGAS----RVRSLYQEAKDNAPSVVFID 495 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~-----~~gq~~~----~l~~~f~~a~~~~p~iL~iD 495 (862)
.+..|+|+|++||||+++|++|.... ..+|+.++|+.+... .+|.... .....|+ ....+.||||
T Consensus 347 ~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~---~a~~GtL~ld 423 (638)
T PRK11388 347 SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFE---LAHGGTLFLE 423 (638)
T ss_pred cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCcee---ECCCCEEEEc
Confidence 34569999999999999999998754 468999999875321 2332100 0001122 2345689999
Q ss_pred HHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc----CC-----CcEEEEEecCCCC-------CCCccccCCCCccc
Q 002961 496 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----GR-----GNVITIASTNRPD-------ILDPALVRPGRFDR 559 (862)
Q Consensus 496 Eid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~----~~-----~~vlvI~tTN~~~-------~Ld~aLlrpgRfd~ 559 (862)
||+.+... ....|+..|+.-. +. -++-+|+|||..- .+.+.|.. |+.
T Consensus 424 ei~~l~~~--------------~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~- 486 (638)
T PRK11388 424 KVEYLSPE--------------LQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYY--ALH- 486 (638)
T ss_pred ChhhCCHH--------------HHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhh--hhc-
Confidence 99998654 5566666665321 11 1467888887531 12222222 222
Q ss_pred cccCCCCCHHhH----HHHHHHHHccC------CC-CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHH
Q 002961 560 KIFIPKPGLIGR----MEILKVHARKK------PM-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDD 628 (862)
Q Consensus 560 ~I~~~~P~~~~R----~~Il~~~l~~~------~~-~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~ed 628 (862)
.+.+..|...+| ..++.+++... .+ ..+..+..|....---+.++|.++++.+... .....|+.+|
T Consensus 487 ~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~---~~~~~i~~~~ 563 (638)
T PRK11388 487 AFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALS---SDNGRIRLSD 563 (638)
T ss_pred eeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHh---CCCCeecHHH
Confidence 234444444444 44555555322 11 1122233333333123457777887776643 2344688888
Q ss_pred HHHHH
Q 002961 629 LLQAA 633 (862)
Q Consensus 629 l~~Al 633 (862)
+...+
T Consensus 564 lp~~~ 568 (638)
T PRK11388 564 LPEHL 568 (638)
T ss_pred Cchhh
Confidence 75443
No 267
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.94 E-value=2.5e-05 Score=81.06 Aligned_cols=40 Identities=35% Similarity=0.234 Sum_probs=35.0
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 59 (205)
T cd03226 20 SLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59 (205)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 5777888889999999999999999999988877777654
No 268
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.94 E-value=2.1e-05 Score=88.83 Aligned_cols=170 Identities=22% Similarity=0.227 Sum_probs=99.5
Q ss_pred CCeEEEECCCCCchhHHHHHHHhh----ccCceeeeecccchhh-----hcccchh-------hHHHHHHHHHhcCCcee
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGE----AGVNFFSISASQFVEI-----YVGVGAS-------RVRSLYQEAKDNAPSVV 492 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~----l~~~~~~i~~~~~~~~-----~~gq~~~-------~l~~~f~~a~~~~p~iL 492 (862)
+..|+|.|++||||+.+|+.|... ...||+.++|+.+... .+|.... .-..+|+.+ +.+.|
T Consensus 101 ~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A---~GGtL 177 (403)
T COG1221 101 GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQA---NGGTL 177 (403)
T ss_pred CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchheec---CCCEE
Confidence 345899999999999999998642 3679999999886543 2221111 112344433 34689
Q ss_pred EhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccc-----c----CCCcEEEEEecCC--CCCCCc--cccCCCCccc
Q 002961 493 FIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF-----E----GRGNVITIASTNR--PDILDP--ALVRPGRFDR 559 (862)
Q Consensus 493 ~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~-----~----~~~~vlvI~tTN~--~~~Ld~--aLlrpgRfd~ 559 (862)
|+|||..+-.. ....|+..||.- . ...+|.+|++||. .+.+-. .|.++ |+..
T Consensus 178 fLDEI~~LP~~--------------~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~ 242 (403)
T COG1221 178 FLDEIHRLPPE--------------GQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNIL 242 (403)
T ss_pred ehhhhhhCCHh--------------HHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCc
Confidence 99999988654 456666666651 1 1246888888853 223333 44431 4555
Q ss_pred cccCCCCCH--HhHHHHHHHHHcc----CCCC--Ccc--cHHH-HHhhcCCCCHHHHHHHHHHHHHHHH
Q 002961 560 KIFIPKPGL--IGRMEILKVHARK----KPMA--DDV--DYLA-VASMTDGMVGAELANIVEVAAINMM 617 (862)
Q Consensus 560 ~I~~~~P~~--~~R~~Il~~~l~~----~~~~--~~~--dl~~-lA~~t~G~s~adI~~lv~~A~~~A~ 617 (862)
.|.+|+... .++..++.+++.. .... ... .... +....+| +.+++.+++..++..+.
T Consensus 243 ~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pG-NirELkN~Ve~~~~~~~ 310 (403)
T COG1221 243 TITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPG-NIRELKNLVERAVAQAS 310 (403)
T ss_pred eecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHHhc
Confidence 666665432 4444555555532 2222 111 1222 2233444 55779999998886554
No 269
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.94 E-value=1.7e-05 Score=83.26 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=34.9
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+.+
T Consensus 25 sl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 64 (221)
T TIGR02211 25 SLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLF 64 (221)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 6778888899999999999999999999998777776643
No 270
>PRK08181 transposase; Validated
Probab=97.94 E-value=9.9e-06 Score=87.78 Aligned_cols=71 Identities=24% Similarity=0.345 Sum_probs=47.7
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhccc-chhhHHHHHHHHHhcCCceeEhHHHHHh
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV-GASRVRSLYQEAKDNAPSVVFIDELDAV 500 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~gq-~~~~l~~~f~~a~~~~p~iL~iDEid~l 500 (862)
.+.+++|+||+|+|||+|+.+|+..+ +..+.+++..++...+... ........+..+ ..+++|+|||++..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~ 179 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYV 179 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccc
Confidence 45679999999999999999999754 5667777776655543211 111123344433 24579999999765
No 271
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.94 E-value=2.7e-05 Score=74.16 Aligned_cols=73 Identities=21% Similarity=0.257 Sum_probs=45.4
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc--------cCceeeeecccchhh---------hc-----c-cchhh-HHHHHHHH
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA--------GVNFFSISASQFVEI---------YV-----G-VGASR-VRSLYQEA 484 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l--------~~~~~~i~~~~~~~~---------~~-----g-q~~~~-l~~~f~~a 484 (862)
...++|+|++|+|||++++.++..+ ..+++.+++...... .+ . ..... ...+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3457899999999999999999976 566666665443211 01 1 11122 24455555
Q ss_pred HhcCCceeEhHHHHHhh
Q 002961 485 KDNAPSVVFIDELDAVG 501 (862)
Q Consensus 485 ~~~~p~iL~iDEid~l~ 501 (862)
......+++|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 55555589999999973
No 272
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.93 E-value=2.3e-05 Score=79.33 Aligned_cols=40 Identities=28% Similarity=0.279 Sum_probs=35.0
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++++..+.-+++.||+|||||||++.+||...+.-|.+..
T Consensus 25 sL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l 64 (259)
T COG4525 25 SLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQL 64 (259)
T ss_pred ceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEE
Confidence 6778888999999999999999999999988777776643
No 273
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.93 E-value=0.00058 Score=80.79 Aligned_cols=129 Identities=24% Similarity=0.186 Sum_probs=73.7
Q ss_pred ccccCcccccccc-----ccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccch-------hhhcccchh
Q 002961 408 YLERGVDVKFSDM-----YRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV-------EIYVGVGAS 475 (862)
Q Consensus 408 l~~~~~s~~~~~~-----~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~-------~~~~gq~~~ 475 (862)
+.++++++..++. ..++.++++.+++|.|++|||||||+|+|||--..-.|.+.+..-. ..|+.++
T Consensus 393 i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~G-- 470 (604)
T COG4178 393 ITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQG-- 470 (604)
T ss_pred eEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCc--
Confidence 4555666544431 1378889999999999999999999999999765545555443211 1244333
Q ss_pred hHHHHHHHHHhcCCceeEhHHHHH---------hhhhccCcCC-----CCchhHHHHHHHHHHhhccccCCCcEEEEEec
Q 002961 476 RVRSLYQEAKDNAPSVVFIDELDA---------VGRERGLIKG-----SGGQERDATLNQLLVCLDGFEGRGNVITIAST 541 (862)
Q Consensus 476 ~l~~~f~~a~~~~p~iL~iDEid~---------l~~~~~~~~~-----Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tT 541 (862)
.++.++-.- ..+.-+--+|+-. +..+...... |+||+.|..++.++ +..+.-+++..||
T Consensus 471 tLre~l~YP--~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARil-----L~kP~~v~LDEAT 543 (604)
T COG4178 471 TLREALCYP--NAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLL-----LHKPKWVFLDEAT 543 (604)
T ss_pred cHHHHHhCC--CCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHH-----HcCCCEEEEecch
Confidence 222222110 0010011111111 1111111111 89999999999998 6666667777888
Q ss_pred CCCC
Q 002961 542 NRPD 545 (862)
Q Consensus 542 N~~~ 545 (862)
+..|
T Consensus 544 sALD 547 (604)
T COG4178 544 SALD 547 (604)
T ss_pred hccC
Confidence 6544
No 274
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.93 E-value=1.8e-05 Score=82.71 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=34.9
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 62 (216)
T TIGR00960 23 NFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRF 62 (216)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 5777888889999999999999999999988777777654
No 275
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.93 E-value=2e-05 Score=84.85 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=35.0
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.++.++-+.|.||+|+|||||+++|||-..+..|.|...
T Consensus 22 ~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~ 62 (345)
T COG1118 22 SLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62 (345)
T ss_pred eeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEEC
Confidence 56677778899999999999999999999988887777443
No 276
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.0013 Score=78.35 Aligned_cols=133 Identities=18% Similarity=0.146 Sum_probs=84.7
Q ss_pred ccccCcccccccc-----c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccch-----hh-------
Q 002961 408 YLERGVDVKFSDM-----Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV-----EI------- 468 (862)
Q Consensus 408 l~~~~~s~~~~~~-----~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~-----~~------- 468 (862)
++.+|+++.|+.. + .++.+++++.++|+||+|+||||++..|-....|..|.|...... ..
T Consensus 466 IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig 545 (716)
T KOG0058|consen 466 IEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIG 545 (716)
T ss_pred EEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHee
Confidence 6788999988752 2 378888999999999999999999999999988888887544311 11
Q ss_pred hcccchhhH-HHHHHHHHhcCCceeEhHHHHHhhhh---------c--cCcC--------CCCchhHHHHHHHHHHhhcc
Q 002961 469 YVGVGASRV-RSLYQEAKDNAPSVVFIDELDAVGRE---------R--GLIK--------GSGGQERDATLNQLLVCLDG 528 (862)
Q Consensus 469 ~~gq~~~~l-~~~f~~a~~~~p~iL~iDEid~l~~~---------~--~~~~--------~Sgge~~r~~l~~LL~~Ld~ 528 (862)
+++|.+-.. .++-+++....+. .-.||+...+.. + +... =|||++.|.++++.|
T Consensus 546 ~V~QEPvLFs~sI~eNI~YG~~~-~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARAL----- 619 (716)
T KOG0058|consen 546 LVGQEPVLFSGSIRENIAYGLDN-ATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARAL----- 619 (716)
T ss_pred eeeccceeecccHHHHHhcCCCC-CCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHH-----
Confidence 344433322 4444555444332 234444432111 0 0000 099999999999887
Q ss_pred ccCCCcEEEEEecCCCCC
Q 002961 529 FEGRGNVITIASTNRPDI 546 (862)
Q Consensus 529 ~~~~~~vlvI~tTN~~~~ 546 (862)
+.++.-+++..+|.-.|.
T Consensus 620 lr~P~VLILDEATSALDa 637 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDA 637 (716)
T ss_pred hcCCCEEEEechhhhcch
Confidence 444444555677765554
No 277
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=1.4e-05 Score=90.74 Aligned_cols=195 Identities=24% Similarity=0.271 Sum_probs=111.7
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhccCce----eeeec-----ccchh--------hhcccchh-hHHHHHH---
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF----FSISA-----SQFVE--------IYVGVGAS-RVRSLYQ--- 482 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~----~~i~~-----~~~~~--------~~~gq~~~-~l~~~f~--- 482 (862)
.....+++++++||||||||.|++-+.+-+.+-. ++++. +.+.. .|..-+.+ ....++.
T Consensus 193 iAAAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~ 272 (490)
T COG0606 193 IAAAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSASLAALVGGGG 272 (490)
T ss_pred HHHhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCCccCCCccchHHHHhCCCC
Confidence 4446678899999999999999999998764321 11110 00000 01100100 0111110
Q ss_pred -----HHHhcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc-----------CCCcEEEEEecCCCCC
Q 002961 483 -----EAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPDI 546 (862)
Q Consensus 483 -----~a~~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~-----------~~~~vlvI~tTN~~~~ 546 (862)
.+...+.+|||+||+-.+- +.+++.|.+-|++-. -..++.+++++|.--.
T Consensus 273 ~p~PGeIsLAH~GVLFLDElpef~--------------~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpc 338 (490)
T COG0606 273 VPRPGEISLAHNGVLFLDELPEFK--------------RSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPC 338 (490)
T ss_pred CCCCCceeeecCCEEEeeccchhh--------------HHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCc
Confidence 1111224699999985543 348888888777521 1245788888886321
Q ss_pred -----------------------CCccccCCCCccccccCCCCCHHhH--------------HHHHHHH----HccCCC-
Q 002961 547 -----------------------LDPALVRPGRFDRKIFIPKPGLIGR--------------MEILKVH----ARKKPM- 584 (862)
Q Consensus 547 -----------------------Ld~aLlrpgRfd~~I~~~~P~~~~R--------------~~Il~~~----l~~~~~- 584 (862)
|...|++ |+|..+.++.++..++ ..+++.+ .+...+
T Consensus 339 G~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~ 416 (490)
T COG0606 339 GNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSAGELIRQVPTGESSAGVRERVAKAREAQIARAGRIG 416 (490)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccC
Confidence 2235666 8999998888763222 2222211 111111
Q ss_pred -C----------------CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 585 -A----------------DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 585 -~----------------~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
. .+.++...+-..-++|.+....+++.|...|-..+...|...|+.+|+.
T Consensus 417 ~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 417 INAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVARTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred cchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHhhhhcccCcchhhHHHHHHHHh
Confidence 1 1223333344455677888888888888888888888888888888875
No 278
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.92 E-value=2.3e-05 Score=82.97 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=34.9
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.||||+|||||+++|+|.+.+..|.+.+
T Consensus 29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 68 (233)
T PRK11629 29 SFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIF 68 (233)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 6777888889999999999999999999988777776654
No 279
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.92 E-value=1.4e-05 Score=90.74 Aligned_cols=54 Identities=24% Similarity=0.245 Sum_probs=42.2
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
+.++++++.|++. + .++.+..+..++|.||||+|||||+++|+|...+..|.+.
T Consensus 15 L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~ 72 (375)
T PRK09452 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM 72 (375)
T ss_pred EEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence 5566677766542 2 3677788888999999999999999999998877766664
No 280
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.91 E-value=2.1e-05 Score=81.99 Aligned_cols=40 Identities=28% Similarity=0.306 Sum_probs=34.7
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 22 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 61 (214)
T TIGR02673 22 SLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI 61 (214)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 6778888889999999999999999999988777776643
No 281
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.91 E-value=9.5e-06 Score=84.60 Aligned_cols=40 Identities=25% Similarity=0.241 Sum_probs=34.4
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~ 59 (213)
T cd03301 20 NLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYI 59 (213)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 5777888899999999999999999999988777676643
No 282
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.90 E-value=2.4e-05 Score=81.41 Aligned_cols=116 Identities=17% Similarity=0.119 Sum_probs=71.7
Q ss_pred ccccCccccccccc----cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccc-hh------------hhc
Q 002961 408 YLERGVDVKFSDMY----RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF-VE------------IYV 470 (862)
Q Consensus 408 l~~~~~s~~~~~~~----~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~-~~------------~~~ 470 (862)
+.+++++..|+... .++.+..+..++|.|+||+|||||+++|+|...+..|.|.+..- ++ .|+
T Consensus 4 L~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~V 83 (237)
T COG0410 4 LEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYV 83 (237)
T ss_pred eeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeC
Confidence 55667777776522 37888888899999999999999999999999888888764321 11 145
Q ss_pred ccchhhH--HHHHHHHHhc-------CCceeEhHHHHHhhhh----cc--CcCCCCchhHHHHHHHHH
Q 002961 471 GVGASRV--RSLYQEAKDN-------APSVVFIDELDAVGRE----RG--LIKGSGGQERDATLNQLL 523 (862)
Q Consensus 471 gq~~~~l--~~~f~~a~~~-------~p~iL~iDEid~l~~~----~~--~~~~Sgge~~r~~l~~LL 523 (862)
.++...+ .++-+++.-. ...--.+|++-.+.+. +. .+.=|||++.-.++...|
T Consensus 84 PegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRAL 151 (237)
T COG0410 84 PEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARAL 151 (237)
T ss_pred cccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHH
Confidence 5544322 2233333211 0111126677665442 11 112289998877777665
No 283
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.89 E-value=3.7e-06 Score=89.22 Aligned_cols=40 Identities=25% Similarity=0.281 Sum_probs=35.4
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+|+||+|||||++.++|-+.+..|.+..
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~ 63 (235)
T COG1122 24 SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV 63 (235)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEE
Confidence 6778888899999999999999999999999888777643
No 284
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.89 E-value=1.6e-05 Score=83.05 Aligned_cols=54 Identities=24% Similarity=0.199 Sum_probs=44.5
Q ss_pred cccccCccccccccc----cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeee
Q 002961 407 QYLERGVDVKFSDMY----RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI 460 (862)
Q Consensus 407 ~l~~~~~s~~~~~~~----~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i 460 (862)
+++++++++.|++.. .++.+..++-+.|.||+|+|||||+|.|.|.+.+..|++
T Consensus 8 ~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI 65 (263)
T COG1127 8 LIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65 (263)
T ss_pred eEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeE
Confidence 367788888888743 267777777799999999999999999999988777766
No 285
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.89 E-value=3.1e-05 Score=80.21 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=34.4
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.|+||+|||||+++|+|...+..|.+..
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (201)
T cd03231 20 SFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLL 59 (201)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 5777888999999999999999999999988776666643
No 286
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.88 E-value=1.8e-05 Score=82.11 Aligned_cols=40 Identities=25% Similarity=0.219 Sum_probs=35.0
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.|+||+|||||+++|+|...+..|.+..
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~ 60 (204)
T PRK13538 21 SFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW 60 (204)
T ss_pred eEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 6777888889999999999999999999998777776654
No 287
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=3.8e-05 Score=83.69 Aligned_cols=118 Identities=18% Similarity=0.204 Sum_probs=79.3
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccC----------------ceeeeecccchhhhcccchhhHHHHHHHHHhc---
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGV----------------NFFSISASQFVEIYVGVGASRVRSLYQEAKDN--- 487 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~----------------~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~--- 487 (862)
+.+..++|+||.|+||++++..+|..+-+ ++..+....- .. .-..+.++.+.+.+...
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~-~~--~I~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK-GR--LHSIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC-CC--cCcHHHHHHHHHHHhhCccC
Confidence 55678999999999999999999886532 1111111000 00 00122345555544322
Q ss_pred -CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCC
Q 002961 488 -APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKP 566 (862)
Q Consensus 488 -~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P 566 (862)
...|++||++|.+... ..|.||..|+. ++.++++|..|+.++.+.|.++| |.. .+.|+++
T Consensus 94 ~~~kv~ii~~ad~mt~~--------------AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLD--------------AISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHH--------------HHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 2358899999998655 78999999996 45578888888889999999999 543 6667664
No 288
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.88 E-value=2.5e-05 Score=79.50 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=26.1
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHh
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAG 451 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~ 451 (862)
++.+..+..+.|.||||+|||||++++.+
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 46778889999999999999999999974
No 289
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.88 E-value=8.4e-06 Score=91.82 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=43.9
Q ss_pred ccccCccccccccc----cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDMY----RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~~----~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++.. .++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 7 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~ 65 (351)
T PRK11432 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFI 65 (351)
T ss_pred EEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEE
Confidence 55667777665421 36778888899999999999999999999998888777754
No 290
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.88 E-value=6.6e-05 Score=89.02 Aligned_cols=178 Identities=17% Similarity=0.229 Sum_probs=94.6
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh-----hcccchhh-------HHHHHHHHHhcCCceeE
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASR-------VRSLYQEAKDNAPSVVF 493 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~-----~~gq~~~~-------l~~~f~~a~~~~p~iL~ 493 (862)
...|+|+|++||||+++|++|.... ..+++.++|..+... .+|..... -..+|+. ...+.||
T Consensus 227 ~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~---a~~GtL~ 303 (520)
T PRK10820 227 DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQ---ANGGSVL 303 (520)
T ss_pred CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhh---cCCCEEE
Confidence 4458999999999999999986543 468899999875432 22321100 0112332 2346799
Q ss_pred hHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccc--cC-------CCcEEEEEecCCC-------CCCCccccCCCCc
Q 002961 494 IDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF--EG-------RGNVITIASTNRP-------DILDPALVRPGRF 557 (862)
Q Consensus 494 iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~--~~-------~~~vlvI~tTN~~-------~~Ld~aLlrpgRf 557 (862)
||||+.+... ....|+..++.- .. ..++-||++|+.. ..+.+.|.. |+
T Consensus 304 LdeI~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL 367 (520)
T PRK10820 304 LDEIGEMSPR--------------MQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RL 367 (520)
T ss_pred EeChhhCCHH--------------HHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hc
Confidence 9999998654 455666665431 11 1246788877543 123344444 54
Q ss_pred cccccCCCCCHHh----HHHHHHHHHcc----CCC-CCcccHHHHHhhcCC-C--CHHHHHHHHHHHHHHHHHhCCcccC
Q 002961 558 DRKIFIPKPGLIG----RMEILKVHARK----KPM-ADDVDYLAVASMTDG-M--VGAELANIVEVAAINMMRDGRTEIT 625 (862)
Q Consensus 558 d~~I~~~~P~~~~----R~~Il~~~l~~----~~~-~~~~dl~~lA~~t~G-~--s~adI~~lv~~A~~~A~~~~~~~It 625 (862)
. .+.+..|...+ ...++.+++.. ... ...+.-+.+.....- | +.++|.+++..|... .....|+
T Consensus 368 ~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~---~~~~~i~ 443 (520)
T PRK10820 368 N-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQ---LEGYELR 443 (520)
T ss_pred C-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHh---CCCCccc
Confidence 3 23444444433 33444444432 211 112333333222221 2 345666666655432 2334677
Q ss_pred HHHH
Q 002961 626 TDDL 629 (862)
Q Consensus 626 ~edl 629 (862)
.+|+
T Consensus 444 ~~~~ 447 (520)
T PRK10820 444 PQDI 447 (520)
T ss_pred HHHc
Confidence 7765
No 291
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.88 E-value=2.4e-05 Score=84.82 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=40.7
Q ss_pred ccccCccccccc----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSD----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++ .+ .++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 8 l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 68 (269)
T PRK13648 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFY 68 (269)
T ss_pred EEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 444555555542 12 26777888889999999999999999999988766665543
No 292
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.88 E-value=1.7e-05 Score=83.62 Aligned_cols=53 Identities=21% Similarity=0.157 Sum_probs=40.6
Q ss_pred ccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 410 ERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 410 ~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++.|++. + .++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 25 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 81 (224)
T cd03220 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTV 81 (224)
T ss_pred hhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 34445555442 1 26778888999999999999999999999988777776654
No 293
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.88 E-value=0.00014 Score=77.78 Aligned_cols=90 Identities=10% Similarity=0.099 Sum_probs=66.2
Q ss_pred CCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCCCCCc-ccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCc
Q 002961 544 PDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDGMVGAELANIVEVAAINMMRDGRT 622 (862)
Q Consensus 544 ~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~~~~~-~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~ 622 (862)
|..+|-.|+. |+- +|...+++.++...||++.+.+..+.-+ ..++.|.......|-+-..+|+..|...+.++...
T Consensus 339 phGiP~D~lD--R~l-II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~ 415 (454)
T KOG2680|consen 339 PHGIPIDLLD--RML-IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK 415 (454)
T ss_pred CCCCcHHHhh--hhh-eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 4557777877 653 6778889999999999999876543322 23444444444455666668888898899999888
Q ss_pred ccCHHHHHHHHHHH
Q 002961 623 EITTDDLLQAAQIE 636 (862)
Q Consensus 623 ~It~edl~~Al~~~ 636 (862)
.+..+|+..+....
T Consensus 416 ~v~~~di~r~y~LF 429 (454)
T KOG2680|consen 416 VVEVDDIERVYRLF 429 (454)
T ss_pred eeehhHHHHHHHHH
Confidence 99999999998744
No 294
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.87 E-value=2e-05 Score=84.85 Aligned_cols=40 Identities=28% Similarity=0.315 Sum_probs=34.7
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+.+
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 60 (255)
T PRK11248 21 NLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL 60 (255)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 6778888889999999999999999999988777776644
No 295
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.87 E-value=2.3e-05 Score=85.58 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=41.2
Q ss_pred ccccCccccccc----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 408 YLERGVDVKFSD----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 408 l~~~~~s~~~~~----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
+.++++++.|++ .+ .++.+..+..++|.||||+|||||+++|+|.+.+..|.+.
T Consensus 6 l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~ 65 (279)
T PRK13635 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65 (279)
T ss_pred EEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence 445566665542 12 2677888888999999999999999999999877766653
No 296
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.87 E-value=2.2e-05 Score=94.39 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=45.8
Q ss_pred ccccCccccccc----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++ .+ .++.+.++..++|+|++|+|||||+++|+|...+..|.+...
T Consensus 342 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~ 403 (582)
T PRK11176 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLD 403 (582)
T ss_pred EEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEEC
Confidence 667788887753 22 277778888899999999999999999999998888877544
No 297
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.87 E-value=2e-05 Score=96.58 Aligned_cols=56 Identities=16% Similarity=0.165 Sum_probs=45.8
Q ss_pred ccccCccccccc----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++ .+ .++.+.++..++|+|++|+|||||++.|+|...+..|.+...
T Consensus 452 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 513 (686)
T TIGR03797 452 IEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYD 513 (686)
T ss_pred EEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEEC
Confidence 677888888842 12 278888899999999999999999999999988877777443
No 298
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.87 E-value=1.9e-05 Score=88.68 Aligned_cols=39 Identities=21% Similarity=0.053 Sum_probs=34.2
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
++.+..+..+.|+||||+|||||+++|++...+..|.+.
T Consensus 25 sl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~ 63 (343)
T TIGR02314 25 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI 63 (343)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 577788888999999999999999999998877777664
No 299
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.87 E-value=2.6e-05 Score=94.74 Aligned_cols=55 Identities=25% Similarity=0.239 Sum_probs=43.1
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|...+..|.+.+
T Consensus 4 l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~ 62 (635)
T PRK11147 4 ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIY 62 (635)
T ss_pred EEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEe
Confidence 4455666666542 2 26777888889999999999999999999998877777654
No 300
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.86 E-value=2.6e-05 Score=96.05 Aligned_cols=56 Identities=23% Similarity=0.163 Sum_probs=46.2
Q ss_pred ccccCccccccc----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++ .+ .++.+.++..++|+|++|+|||||+++|+|...+..|.+...
T Consensus 478 I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 539 (710)
T TIGR03796 478 VELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFD 539 (710)
T ss_pred EEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 677888888864 12 277788889999999999999999999999998887777543
No 301
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.86 E-value=2.1e-05 Score=89.46 Aligned_cols=54 Identities=20% Similarity=0.144 Sum_probs=43.2
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
+.++++++.|++. + .++.+..+..++|.||||+|||||+++|+|...+..|.+.
T Consensus 20 l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~ 77 (377)
T PRK11607 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIM 77 (377)
T ss_pred EEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence 6667777777642 1 3777888888999999999999999999998877666554
No 302
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.86 E-value=3.8e-05 Score=89.14 Aligned_cols=197 Identities=15% Similarity=0.171 Sum_probs=114.2
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeeccc-----chhhhcccchhhHHHHHHH--HHhcCCceeEhHH
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ-----FVEIYVGVGASRVRSLYQE--AKDNAPSVVFIDE 496 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~-----~~~~~~gq~~~~l~~~f~~--a~~~~p~iL~iDE 496 (862)
..+++.-+|+|+|.||+|||-++++.++.++...+. +... +....+..... -...++. +.-...+|..|||
T Consensus 373 ~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt-sGkaSSaAGLTaaVvkD~es-gdf~iEAGALmLADnGICCIDE 450 (764)
T KOG0480|consen 373 TSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT-SGKASSAAGLTAAVVKDEES-GDFTIEAGALMLADNGICCIDE 450 (764)
T ss_pred ccccCCceEEEeCCCCccHHHHHHHHhccCCcceEe-cCcccccccceEEEEecCCC-CceeeecCcEEEccCceEEech
Confidence 445666779999999999999999999976554332 2211 10000000000 0011110 0112346889999
Q ss_pred HHHhhhhccCcCCCCchhHHHHHHHHHHhhccc----c-------CCCcEEEEEecCCCCC-------------CCcccc
Q 002961 497 LDAVGRERGLIKGSGGQERDATLNQLLVCLDGF----E-------GRGNVITIASTNRPDI-------------LDPALV 552 (862)
Q Consensus 497 id~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~----~-------~~~~vlvI~tTN~~~~-------------Ld~aLl 552 (862)
+|++..+ -...+.+.|+.- . -+.+.-||+++|+... +.++++
T Consensus 451 FDKMd~~--------------dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApim 516 (764)
T KOG0480|consen 451 FDKMDVK--------------DQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIM 516 (764)
T ss_pred hcccChH--------------hHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhh
Confidence 9998542 123455555531 1 1234567888887532 678899
Q ss_pred CCCCcccc-ccCCCCCHHhHHHHHHHHHccCCC-CCc----------------------------ccHHHHH--------
Q 002961 553 RPGRFDRK-IFIPKPGLIGRMEILKVHARKKPM-ADD----------------------------VDYLAVA-------- 594 (862)
Q Consensus 553 rpgRfd~~-I~~~~P~~~~R~~Il~~~l~~~~~-~~~----------------------------~dl~~lA-------- 594 (862)
+ |||.. |-+..|+...-..|-++.+..+.. .+. ..-..+.
T Consensus 517 S--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~ 594 (764)
T KOG0480|consen 517 S--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQ 594 (764)
T ss_pred h--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHH
Confidence 9 99965 456677776666665555432210 000 0000011
Q ss_pred -------hhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHhc
Q 002961 595 -------SMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEER 638 (862)
Q Consensus 595 -------~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~ 638 (862)
..+.+.|.++|+.+++.+...|...-+..+|.+|+.+|++....
T Consensus 595 ~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk~ 645 (764)
T KOG0480|consen 595 RDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELLKK 645 (764)
T ss_pred hhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHh
Confidence 01224677889999998887888777888999999888875443
No 303
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.86 E-value=2.3e-05 Score=88.64 Aligned_cols=55 Identities=22% Similarity=0.170 Sum_probs=41.5
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCce--eeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF--FSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~--~~i~~ 462 (862)
+.++++++.|+.. + .++.+..+..++|+||||+|||||+++|+|...+.. |.+..
T Consensus 6 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~ 66 (362)
T TIGR03258 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAI 66 (362)
T ss_pred EEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEE
Confidence 4455666666542 1 267777788899999999999999999999887777 76643
No 304
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.86 E-value=2.1e-05 Score=88.38 Aligned_cols=40 Identities=13% Similarity=0.041 Sum_probs=34.5
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+.+
T Consensus 25 sl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~ 64 (343)
T PRK11153 25 SLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLV 64 (343)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 6777888889999999999999999999988777676643
No 305
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.85 E-value=3.4e-05 Score=79.91 Aligned_cols=40 Identities=13% Similarity=0.058 Sum_probs=34.7
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 57 (206)
T TIGR03608 18 NLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYL 57 (206)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 5777888899999999999999999999988777776644
No 306
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.85 E-value=1.3e-05 Score=88.63 Aligned_cols=55 Identities=27% Similarity=0.218 Sum_probs=44.2
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++. + .++.+..+..++|.||||+|||||+++|+|.+.+..|.+..
T Consensus 8 i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i 66 (306)
T PRK13537 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISL 66 (306)
T ss_pred EEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 5667777777642 1 36777888889999999999999999999998887777654
No 307
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.85 E-value=2.8e-05 Score=80.03 Aligned_cols=38 Identities=34% Similarity=0.308 Sum_probs=31.0
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhc--cCceeee
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEA--GVNFFSI 460 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l--~~~~~~i 460 (862)
++.+..+..++|+||||+|||||+++|+|.. .+..|.+
T Consensus 27 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i 66 (192)
T cd03232 27 SGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEI 66 (192)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEE
Confidence 5777888889999999999999999999953 2444544
No 308
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.85 E-value=3.2e-05 Score=82.30 Aligned_cols=40 Identities=28% Similarity=0.277 Sum_probs=34.6
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (239)
T cd03296 22 SLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF 61 (239)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 6777888889999999999999999999988777776643
No 309
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.85 E-value=6.3e-05 Score=82.73 Aligned_cols=56 Identities=29% Similarity=0.191 Sum_probs=43.7
Q ss_pred ccccCcccccc-cc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFS-DM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~-~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+...++++.|+ +. . .++.+..+.-++|.||||+|||||+++|+|...+..|.+...
T Consensus 5 i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~ 65 (293)
T COG1131 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVL 65 (293)
T ss_pred eeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEc
Confidence 34556777777 32 2 266777777799999999999999999999998888887544
No 310
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.85 E-value=3.2e-05 Score=80.63 Aligned_cols=41 Identities=29% Similarity=0.261 Sum_probs=35.4
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+...
T Consensus 19 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~ 59 (213)
T cd03235 19 SFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVF 59 (213)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEEC
Confidence 57778888899999999999999999999987777776543
No 311
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.85 E-value=3.3e-05 Score=88.95 Aligned_cols=180 Identities=26% Similarity=0.291 Sum_probs=105.5
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh-----hcccchhhH--------HHHHHHHHhcCCc
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV--------RSLYQEAKDNAPS 490 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~-----~~gq~~~~l--------~~~f~~a~~~~p~ 490 (862)
..+..|+|.|.+||||..++++|-... +.||+.++|+.+... .+|...+.+ ...|+.| +.+
T Consensus 266 ~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A---~gG 342 (560)
T COG3829 266 KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELA---NGG 342 (560)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcCCccccccccCCCCcceeec---cCC
Confidence 445679999999999999999997754 679999999986544 333322211 2233322 234
Q ss_pred eeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc---------CCCcEEEEEecCCC--C-----CCCccccCC
Q 002961 491 VVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRP--D-----ILDPALVRP 554 (862)
Q Consensus 491 iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~---------~~~~vlvI~tTN~~--~-----~Ld~aLlrp 554 (862)
-||+|||..+.-. +...||..|+.-. ..-.|-||+|||.. + .+-..|..
T Consensus 343 TLFLDEIgempl~--------------LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYY- 407 (560)
T COG3829 343 TLFLDEIGEMPLP--------------LQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYY- 407 (560)
T ss_pred eEEehhhccCCHH--------------HHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHHHhcCcchhhhee-
Confidence 5899999877433 6677887776411 12358999999863 1 12233333
Q ss_pred CCccccccCCCCCHHhHH----HHHHHHHccC----C-----CCCcccHHHHH-hhcCCCCHHHHHHHHHHHHHHHHHhC
Q 002961 555 GRFDRKIFIPKPGLIGRM----EILKVHARKK----P-----MADDVDYLAVA-SMTDGMVGAELANIVEVAAINMMRDG 620 (862)
Q Consensus 555 gRfd~~I~~~~P~~~~R~----~Il~~~l~~~----~-----~~~~~dl~~lA-~~t~G~s~adI~~lv~~A~~~A~~~~ 620 (862)
|+. ++.+..|...+|. .+...++.+. + +++++ +..|. ..-+| +.++|+|++..+... ...
T Consensus 408 -RLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a-~~~L~~y~WPG-NVRELeNviER~v~~--~~~ 481 (560)
T COG3829 408 -RLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDA-LALLLRYDWPG-NVRELENVIERAVNL--VES 481 (560)
T ss_pred -eec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHH-HHHHHhCCCCc-hHHHHHHHHHHHHhc--cCC
Confidence 444 4555555544433 3444444321 1 22222 22222 22333 457888998888752 334
Q ss_pred CcccCHHHHH
Q 002961 621 RTEITTDDLL 630 (862)
Q Consensus 621 ~~~It~edl~ 630 (862)
...|+.+|+-
T Consensus 482 ~~~I~~~~lp 491 (560)
T COG3829 482 DGLIDADDLP 491 (560)
T ss_pred cceeehhhcc
Confidence 4447777775
No 312
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.84 E-value=1.6e-05 Score=80.36 Aligned_cols=55 Identities=22% Similarity=0.195 Sum_probs=41.4
Q ss_pred ccCccccccccc-----cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeeccc
Q 002961 410 ERGVDVKFSDMY-----RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 464 (862)
Q Consensus 410 ~~~~s~~~~~~~-----~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~ 464 (862)
.+++++.|.... .++.+..++-++|+||+|+|||||+|.|.+...+..|.+....
T Consensus 4 f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~ 63 (223)
T COG2884 4 FENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNG 63 (223)
T ss_pred ehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECC
Confidence 345555554321 2566777777999999999999999999999988888776543
No 313
>PRK13409 putative ATPase RIL; Provisional
Probab=97.84 E-value=2.8e-05 Score=93.40 Aligned_cols=56 Identities=23% Similarity=0.230 Sum_probs=44.4
Q ss_pred cccccCcccccccc-c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 407 QYLERGVDVKFSDM-Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 407 ~l~~~~~s~~~~~~-~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
.+.++++++.|++. + .++.+..++.+.|+||||+|||||+++|+|.+.+..|.+.+
T Consensus 340 ~l~~~~ls~~~~~~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~ 398 (590)
T PRK13409 340 LVEYPDLTKKLGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDP 398 (590)
T ss_pred EEEEcceEEEECCEEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 36677777777542 1 26677888899999999999999999999998877777654
No 314
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=97.84 E-value=5.8e-05 Score=89.18 Aligned_cols=184 Identities=21% Similarity=0.207 Sum_probs=99.0
Q ss_pred CCeEEEECCCCCchhHHHHHHHhh---ccCceeeeecccchhh-----hcccchhh--------HHHHHHHHHhcCCcee
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGE---AGVNFFSISASQFVEI-----YVGVGASR--------VRSLYQEAKDNAPSVV 492 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~---l~~~~~~i~~~~~~~~-----~~gq~~~~--------l~~~f~~a~~~~p~iL 492 (862)
...|+|+|++||||+++|++|... .+.+|+.++|+.+... .+|..... -..+|+. ...+.|
T Consensus 235 ~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~---A~gGTL 311 (526)
T TIGR02329 235 DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEA---AHRGTL 311 (526)
T ss_pred CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhh---cCCceE
Confidence 456899999999999999999864 3578999999875432 22221110 0122322 234579
Q ss_pred EhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc-----C----CCcEEEEEecCCCC--CCCc-----cccCCCC
Q 002961 493 FIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----G----RGNVITIASTNRPD--ILDP-----ALVRPGR 556 (862)
Q Consensus 493 ~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~-----~----~~~vlvI~tTN~~~--~Ld~-----aLlrpgR 556 (862)
|||||+.+... ....|+..|+.-. + ..++-+|++||..- .+.. .|.. |
T Consensus 312 fLdeI~~Lp~~--------------~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--r 375 (526)
T TIGR02329 312 FLDEIGEMPLP--------------LQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--R 375 (526)
T ss_pred EecChHhCCHH--------------HHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--h
Confidence 99999998654 5566666665321 0 12356888876531 1222 2222 3
Q ss_pred cc-ccccCCCCCH--HhHHHHHHHHHccCCC--CCcccHHH----------HHhhcCCCCHHHHHHHHHHHHHHHHHhCC
Q 002961 557 FD-RKIFIPKPGL--IGRMEILKVHARKKPM--ADDVDYLA----------VASMTDGMVGAELANIVEVAAINMMRDGR 621 (862)
Q Consensus 557 fd-~~I~~~~P~~--~~R~~Il~~~l~~~~~--~~~~dl~~----------lA~~t~G~s~adI~~lv~~A~~~A~~~~~ 621 (862)
+. ..|.+|+... ++...++.+++..... ...+.-+. |....-=-+.++|.++++.++..+.....
T Consensus 376 L~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~ 455 (526)
T TIGR02329 376 LSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPA 455 (526)
T ss_pred cCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCC
Confidence 32 2344444322 3444556666643210 00122111 22221112457788888877654432223
Q ss_pred cccCHHHHHH
Q 002961 622 TEITTDDLLQ 631 (862)
Q Consensus 622 ~~It~edl~~ 631 (862)
..|+.+++..
T Consensus 456 ~~I~~~~l~~ 465 (526)
T TIGR02329 456 GALTPDVLRA 465 (526)
T ss_pred CccCHHHhhh
Confidence 4678777643
No 315
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.84 E-value=1.5e-05 Score=81.29 Aligned_cols=53 Identities=28% Similarity=0.159 Sum_probs=40.3
Q ss_pred ccccCccccccccc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDMY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.| .+ .++.+..+..++|.|+||+|||||+++|+|...+..|.+..
T Consensus 5 l~~~~l~~~~--~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (182)
T cd03215 5 LEVRGLSVKG--AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITL 59 (182)
T ss_pred EEEeccEEEe--eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 4445555554 22 26777888889999999999999999999998777666543
No 316
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.84 E-value=2.7e-05 Score=82.62 Aligned_cols=42 Identities=14% Similarity=0.044 Sum_probs=36.2
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeeccc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 464 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~ 464 (862)
+|.+.++..+++.||||.||||++|.|.|.+-+..|.+....
T Consensus 44 sf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G 85 (325)
T COG4586 44 SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNG 85 (325)
T ss_pred eeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecC
Confidence 466778888999999999999999999999988888876544
No 317
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.83 E-value=6.6e-05 Score=81.28 Aligned_cols=131 Identities=21% Similarity=0.252 Sum_probs=85.1
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceeee------ecccchhhhcccchhhHHHHHHHHHh-------cCCceeEhHHH
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFSI------SASQFVEIYVGVGASRVRSLYQEAKD-------NAPSVVFIDEL 497 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~i------~~~~~~~~~~gq~~~~l~~~f~~a~~-------~~p~iL~iDEi 497 (862)
+.+++||||+|||+...+.|..+..+..+- +.++-.. .+..... ...|...+. ..+.++++||.
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rg--id~vr~q-i~~fast~~~~~fst~~~fKlvILDEA 140 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRG--IDPVRQQ-IHLFASTQQPTTYSTHAAFKLVILDEA 140 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccC--CcchHHH-HHHHHhhccceeccccCceeEEEecch
Confidence 799999999999999999998875532211 1111000 0000010 122332221 25668999999
Q ss_pred HHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHH
Q 002961 498 DAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKV 577 (862)
Q Consensus 498 d~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~ 577 (862)
|++..+ +.++|-..++.+..+ +.+...+|++..+.|++++ |+. .+.|.+.+.......+.+
T Consensus 141 DaMT~~--------------AQnALRRviek~t~n--~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~sh 201 (360)
T KOG0990|consen 141 DAMTRD--------------AQNALRRVIEKYTAN--TRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSH 201 (360)
T ss_pred hHhhHH--------------HHHHHHHHHHHhccc--eEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHH
Confidence 998654 677777777777664 4444666999999999998 776 566667777777777777
Q ss_pred HHccCC
Q 002961 578 HARKKP 583 (862)
Q Consensus 578 ~l~~~~ 583 (862)
+.....
T Consensus 202 i~e~e~ 207 (360)
T KOG0990|consen 202 IRESEQ 207 (360)
T ss_pred HHhcch
Confidence 765443
No 318
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.82 E-value=1.4e-05 Score=88.24 Aligned_cols=55 Identities=22% Similarity=0.213 Sum_probs=43.1
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 5 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~ 63 (303)
T TIGR01288 5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITV 63 (303)
T ss_pred EEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 4455666666542 2 26778888899999999999999999999988777777654
No 319
>PRK12377 putative replication protein; Provisional
Probab=97.82 E-value=4e-05 Score=82.13 Aligned_cols=70 Identities=19% Similarity=0.293 Sum_probs=45.6
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhcccc--hhhHHHHHHHHHhcCCceeEhHHHHHh
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVG--ASRVRSLYQEAKDNAPSVVFIDELDAV 500 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~gq~--~~~l~~~f~~a~~~~p~iL~iDEid~l 500 (862)
..+++|+||+|||||+|+.+|+..+ +..+++++..++...+.... ......++..+ ...++|+|||+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 3579999999999999999999977 55667777666544321100 00112333333 34579999998553
No 320
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=4.8e-05 Score=87.41 Aligned_cols=114 Identities=17% Similarity=0.168 Sum_probs=76.0
Q ss_pred ccccCccccccccc-----cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeee--ecccchhh----------hc
Q 002961 408 YLERGVDVKFSDMY-----RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI--SASQFVEI----------YV 470 (862)
Q Consensus 408 l~~~~~s~~~~~~~-----~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i--~~~~~~~~----------~~ 470 (862)
+..+|+++.|++.- .++.+..+..|.|+|+||+||||++++|..... ..|.| +..++... |+
T Consensus 352 I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~V 430 (591)
T KOG0057|consen 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVV 430 (591)
T ss_pred EEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEe
Confidence 56678887777532 278888889999999999999999999998775 44444 22222211 55
Q ss_pred ccchhhH-HHHHHHHHhcCCceeEhHHHHHhhhhccCc-------C------------CCCchhHHHHHHHHH
Q 002961 471 GVGASRV-RSLYQEAKDNAPSVVFIDELDAVGRERGLI-------K------------GSGGQERDATLNQLL 523 (862)
Q Consensus 471 gq~~~~l-~~~f~~a~~~~p~iL~iDEid~l~~~~~~~-------~------------~Sgge~~r~~l~~LL 523 (862)
.|....+ .+++.++...+|++ -.+|+-..+.+.+.. . =||||+.+..+.+.+
T Consensus 431 PQd~~LFndTIl~NI~YGn~sa-s~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~ 502 (591)
T KOG0057|consen 431 PQDSVLFNDTILYNIKYGNPSA-SDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAF 502 (591)
T ss_pred CCcccccchhHHHHhhcCCCCc-CHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHH
Confidence 5554433 66777887777763 455554444332110 0 099999998887766
No 321
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.82 E-value=2.3e-05 Score=93.72 Aligned_cols=132 Identities=25% Similarity=0.239 Sum_probs=75.1
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHH--HH------HHhcCCceeEhHHH
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLY--QE------AKDNAPSVVFIDEL 497 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f--~~------a~~~~p~iL~iDEi 497 (862)
+++.-+|||+|.||+|||.|++.+++.+...++.---+... .|-+...++.-. ++ +....++|+.|||+
T Consensus 316 iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~---~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEf 392 (682)
T COG1241 316 IRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA---AGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEF 392 (682)
T ss_pred cccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc---cCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEec
Confidence 45556799999999999999999998765443322111100 011110000000 10 01134678999999
Q ss_pred HHhhhhccCcCCCCchhHHHHHHHHHHhhccc----c-------CCCcEEEEEecCCCCC-------------CCccccC
Q 002961 498 DAVGRERGLIKGSGGQERDATLNQLLVCLDGF----E-------GRGNVITIASTNRPDI-------------LDPALVR 553 (862)
Q Consensus 498 d~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~----~-------~~~~vlvI~tTN~~~~-------------Ld~aLlr 553 (862)
|.+... ..+.+.+.|+.- . -+...-|++|+|+... |+++|++
T Consensus 393 dKm~~~--------------dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS 458 (682)
T COG1241 393 DKMNEE--------------DRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS 458 (682)
T ss_pred cCCChH--------------HHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh
Confidence 987432 334455555431 1 1234567888887642 6789999
Q ss_pred CCCccccccCC-CCCHHhHHHHHH
Q 002961 554 PGRFDRKIFIP-KPGLIGRMEILK 576 (862)
Q Consensus 554 pgRfd~~I~~~-~P~~~~R~~Il~ 576 (862)
|||..+.+. .|+.+.-..|..
T Consensus 459 --RFDLifvl~D~~d~~~D~~ia~ 480 (682)
T COG1241 459 --RFDLIFVLKDDPDEEKDEEIAE 480 (682)
T ss_pred --hCCeeEEecCCCCccchHHHHH
Confidence 999776554 566554444433
No 322
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.82 E-value=4e-05 Score=79.38 Aligned_cols=38 Identities=32% Similarity=0.367 Sum_probs=32.0
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhc--cCceeee
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEA--GVNFFSI 460 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l--~~~~~~i 460 (862)
++.+.++..++|+|+||+|||||+++|+|.. .+..|.+
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i 59 (200)
T cd03217 20 NLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEI 59 (200)
T ss_pred ceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEE
Confidence 5778888999999999999999999999983 4555544
No 323
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.81 E-value=1.9e-05 Score=82.20 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=34.2
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 21 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (211)
T cd03225 21 SLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60 (211)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 5667788889999999999999999999988777776643
No 324
>PRK10908 cell division protein FtsE; Provisional
Probab=97.81 E-value=3.9e-05 Score=80.65 Aligned_cols=40 Identities=25% Similarity=0.183 Sum_probs=35.1
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 61 (222)
T PRK10908 22 TFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF 61 (222)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 5777888899999999999999999999998777777654
No 325
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.81 E-value=2.8e-05 Score=81.66 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=34.0
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
++.+..++-+.|.||+|||||||++.|++-..+..|.+.
T Consensus 25 ~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~ 63 (226)
T COG1136 25 NLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVL 63 (226)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 677888888999999999999999999998877777653
No 326
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.81 E-value=4.3e-05 Score=76.69 Aligned_cols=53 Identities=21% Similarity=0.185 Sum_probs=41.3
Q ss_pred ccCccccccccc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 410 ERGVDVKFSDMY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 410 ~~~~s~~~~~~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++++.+.|+... .++.+..++.+.|.||+|+|||||++.|||...+..|.+..
T Consensus 4 L~~V~~~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i 58 (231)
T COG3840 4 LDDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILI 58 (231)
T ss_pred ccceEEeeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEE
Confidence 345555565432 36777788889999999999999999999998887777744
No 327
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.80 E-value=6.3e-05 Score=84.45 Aligned_cols=56 Identities=23% Similarity=0.243 Sum_probs=46.5
Q ss_pred cccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 407 QYLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 407 ~l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|.+.+..|.+..
T Consensus 41 ~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i 100 (340)
T PRK13536 41 AIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITV 100 (340)
T ss_pred eEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEE
Confidence 47788888888763 2 37778888889999999999999999999998887777654
No 328
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.79 E-value=0.00016 Score=88.76 Aligned_cols=102 Identities=24% Similarity=0.290 Sum_probs=63.6
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh-----hcccchhh----HHHHHHHHHhcCCceeEhH
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASR----VRSLYQEAKDNAPSVVFID 495 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~-----~~gq~~~~----l~~~f~~a~~~~p~iL~iD 495 (862)
....|+|+|++|||||++|++|.... +.+++.++|..+... .+|..... .......+.....+.||||
T Consensus 398 ~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ld 477 (686)
T PRK15429 398 SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 477 (686)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccchhhHHHhcCCCeEEEe
Confidence 34568999999999999999998743 568999998865322 22321100 0001111223345689999
Q ss_pred HHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc--C-------CCcEEEEEecCC
Q 002961 496 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--G-------RGNVITIASTNR 543 (862)
Q Consensus 496 Eid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~--~-------~~~vlvI~tTN~ 543 (862)
||+.+... ....|+..|+.-. . ..++-+|++|+.
T Consensus 478 ei~~L~~~--------------~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 478 EVGDMPLE--------------LQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred chhhCCHH--------------HHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 99998654 5566666664321 1 235778888865
No 329
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.79 E-value=4.6e-05 Score=82.47 Aligned_cols=55 Identities=18% Similarity=0.106 Sum_probs=42.8
Q ss_pred ccccCccccccc--cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSD--MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~--~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++ .+ .++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 12 l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 70 (265)
T PRK10575 12 FALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70 (265)
T ss_pred EEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence 556666666653 12 36788888899999999999999999999988766666543
No 330
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.79 E-value=1.3e-05 Score=91.09 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=41.8
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++. + .++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 4 l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~ 62 (369)
T PRK11000 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI 62 (369)
T ss_pred EEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 3445556555432 1 26777788889999999999999999999998777777654
No 331
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.78 E-value=4.6e-05 Score=93.63 Aligned_cols=115 Identities=21% Similarity=0.142 Sum_probs=72.5
Q ss_pred ccccCccccccc----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccc--h--------h--hh
Q 002961 408 YLERGVDVKFSD----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF--V--------E--IY 469 (862)
Q Consensus 408 l~~~~~s~~~~~----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~--~--------~--~~ 469 (862)
+.++++++.|++ .+ .++.+.++..++|+|++|+|||||++.|+|...+..|.+..... . . .|
T Consensus 464 I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~ 543 (694)
T TIGR03375 464 IEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGY 543 (694)
T ss_pred EEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEE
Confidence 667788888853 12 37778888999999999999999999999998888777654421 0 0 14
Q ss_pred cccchhhH-HHHHHHHHhcCCceeEhHHH-------------HHhhhhc----cC--cCCCCchhHHHHHHHHH
Q 002961 470 VGVGASRV-RSLYQEAKDNAPSVVFIDEL-------------DAVGRER----GL--IKGSGGQERDATLNQLL 523 (862)
Q Consensus 470 ~gq~~~~l-~~~f~~a~~~~p~iL~iDEi-------------d~l~~~~----~~--~~~Sgge~~r~~l~~LL 523 (862)
+.|....+ .++.+++....|+. -.+++ +.+.... +. ..=|||++.|..+++.+
T Consensus 544 v~Q~~~lf~~TI~eNi~~~~~~~-~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARal 616 (694)
T TIGR03375 544 VPQDPRLFYGTLRDNIALGAPYA-DDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARAL 616 (694)
T ss_pred ECCChhhhhhhHHHHHhCCCCCC-CHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 44543322 45555555444431 12222 2221000 00 11189999999998877
No 332
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.78 E-value=4e-05 Score=91.87 Aligned_cols=56 Identities=16% Similarity=0.111 Sum_probs=45.5
Q ss_pred ccccCccccccc----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++ .+ .++.+++++.++|+|++|+|||||+++|+|...+..|.+...
T Consensus 331 i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~ 392 (571)
T TIGR02203 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLD 392 (571)
T ss_pred EEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEEC
Confidence 667788877753 12 277788899999999999999999999999998877777544
No 333
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.78 E-value=8.9e-05 Score=76.53 Aligned_cols=40 Identities=23% Similarity=0.283 Sum_probs=34.5
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (198)
T TIGR01189 20 SFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRW 59 (198)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEE
Confidence 6778888899999999999999999999988776666543
No 334
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.78 E-value=5e-05 Score=90.91 Aligned_cols=55 Identities=18% Similarity=0.080 Sum_probs=43.9
Q ss_pred ccccCcccccc-c--cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFS-D--MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~-~--~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|+ + .+ .++.+..+..++|+||||+|||||+++|+|.+.+..|.+.+
T Consensus 7 l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~ 66 (556)
T PRK11819 7 YTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARP 66 (556)
T ss_pred EEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 56667777776 3 22 36778888889999999999999999999998777777654
No 335
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.77 E-value=6.4e-05 Score=78.47 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=44.2
Q ss_pred ccccCccccccc-c----ccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSD-M----YRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~-~----~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|.+ . ..++.+..++-|.|+|++|+|||||+++|.+...+..|++-.
T Consensus 4 i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~ 63 (258)
T COG3638 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILF 63 (258)
T ss_pred EEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEe
Confidence 556777777733 1 237888888999999999999999999999988877777643
No 336
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.77 E-value=3.2e-05 Score=78.07 Aligned_cols=99 Identities=26% Similarity=0.383 Sum_probs=64.2
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh-----hcccchh-------hHHHHHHHHHhcCCcee
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGAS-------RVRSLYQEAKDNAPSVV 492 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~-----~~gq~~~-------~l~~~f~~a~~~~p~iL 492 (862)
.+..|+|+|++||||+.+|++|-... ..+|+.++|+.+... .+|.... .-..+++. ...+.|
T Consensus 21 ~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~---A~~GtL 97 (168)
T PF00158_consen 21 SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQ---ANGGTL 97 (168)
T ss_dssp STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHH---TTTSEE
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceee---ccceEE
Confidence 34678999999999999999998854 468999999876432 3343211 01234443 344689
Q ss_pred EhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccc--c---C----CCcEEEEEecCC
Q 002961 493 FIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF--E---G----RGNVITIASTNR 543 (862)
Q Consensus 493 ~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~--~---~----~~~vlvI~tTN~ 543 (862)
+||||+.+... ....|+..|+.- . . ..++-+|++|+.
T Consensus 98 ~Ld~I~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 98 FLDEIEDLPPE--------------LQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp EEETGGGS-HH--------------HHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred eecchhhhHHH--------------HHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 99999998665 667777777631 1 1 236888998875
No 337
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.77 E-value=4.8e-05 Score=81.55 Aligned_cols=40 Identities=28% Similarity=0.306 Sum_probs=33.9
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.+..+..++|+||||+|||||+++|+|...+..|.+.+.
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~ 59 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIE 59 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEEC
Confidence 4456778899999999999999999999988777777554
No 338
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.77 E-value=5.2e-05 Score=78.93 Aligned_cols=160 Identities=25% Similarity=0.250 Sum_probs=83.3
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccC---ceeeeec-ccchh---------------------h-hc------------
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGV---NFFSISA-SQFVE---------------------I-YV------------ 470 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~---~~~~i~~-~~~~~---------------------~-~~------------ 470 (862)
...++|+||.|+|||+|++.+...+.. ..+++.. ..... . ..
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 456899999999999999999987732 1112211 10000 0 00
Q ss_pred ccchhhHHHHHHHHHhcC-CceeEhHHHHHhh-hhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEE-EecCC--C-
Q 002961 471 GVGASRVRSLYQEAKDNA-PSVVFIDELDAVG-RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNR--P- 544 (862)
Q Consensus 471 gq~~~~l~~~f~~a~~~~-p~iL~iDEid~l~-~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI-~tTN~--~- 544 (862)
......+..+++.+.... ..+++|||++.+. ... .....+..|...++......++.+| ++++. .
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~ 170 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLME 170 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---------chHHHHHHHHHHHhhccccCCceEEEECCchHHHH
Confidence 011223456666665543 3689999999987 211 1122455555555553334444444 43321 1
Q ss_pred --CCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCC-C-CCcccHHHHHhhcCCC
Q 002961 545 --DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP-M-ADDVDYLAVASMTDGM 600 (862)
Q Consensus 545 --~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~-~-~~~~dl~~lA~~t~G~ 600 (862)
..-...+.. |+.. +.+++.+.++..+++...+.... + .++.++..+...+.|.
T Consensus 171 ~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 171 EFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp HTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-
T ss_pred HhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCC
Confidence 112233443 7776 99999999999999998876651 1 2566777788887764
No 339
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.77 E-value=2.5e-05 Score=79.65 Aligned_cols=70 Identities=31% Similarity=0.496 Sum_probs=45.4
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhccc-chhhHHHHHHHHHhcCCceeEhHHHH
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV-GASRVRSLYQEAKDNAPSVVFIDELD 498 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~gq-~~~~l~~~f~~a~~~~p~iL~iDEid 498 (862)
..+.+++|+||+|+|||+|+.+|+.++ +..+.+++..++...+... ........+..+. ..++|+|||+.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG 118 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLG 118 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccc
Confidence 345789999999999999999998865 6777788877766542211 1112234444443 34689999984
No 340
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.76 E-value=0.00013 Score=71.27 Aligned_cols=72 Identities=24% Similarity=0.329 Sum_probs=44.7
Q ss_pred EEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhh-------------------ccc-chhhH----HHHHHHH
Q 002961 432 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIY-------------------VGV-GASRV----RSLYQEA 484 (862)
Q Consensus 432 vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~-------------------~gq-~~~~l----~~~f~~a 484 (862)
++|+|+||+|||+++..+++.. +.+.++++........ ... ..... ......+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 5899999999999999999876 3455555543322100 000 00001 1223444
Q ss_pred HhcCCceeEhHHHHHhhhh
Q 002961 485 KDNAPSVVFIDELDAVGRE 503 (862)
Q Consensus 485 ~~~~p~iL~iDEid~l~~~ 503 (862)
....|.++++||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 5567889999999988643
No 341
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.75 E-value=3e-05 Score=82.82 Aligned_cols=69 Identities=22% Similarity=0.420 Sum_probs=47.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhccc---chhhHHHHHHHHHhcCCceeEhHHHHHh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV---GASRVRSLYQEAKDNAPSVVFIDELDAV 500 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~gq---~~~~l~~~f~~a~~~~p~iL~iDEid~l 500 (862)
.+++|+|++|||||+|+.+|+..+ +..+..++..++...+.+. .......+++.+. ..++|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 479999999999999999999987 6677777777665432211 1111234444443 4679999999664
No 342
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.75 E-value=5.4e-05 Score=93.18 Aligned_cols=131 Identities=20% Similarity=0.155 Sum_probs=79.0
Q ss_pred ccccCccccccc---cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccch----------h--hhc
Q 002961 408 YLERGVDVKFSD---MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV----------E--IYV 470 (862)
Q Consensus 408 l~~~~~s~~~~~---~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~----------~--~~~ 470 (862)
+.++++++.|++ .+ .++.+.++..++|+|++|+|||||++.|+|...+..|.+...... . .|+
T Consensus 474 I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v 553 (708)
T TIGR01193 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYL 553 (708)
T ss_pred EEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEE
Confidence 667788888853 12 377888889999999999999999999999988887777544311 0 144
Q ss_pred ccchhhH-HHHHHHHHhc-CCceeEhHHHHHhhhh-------------c----c--CcCCCCchhHHHHHHHHHHhhccc
Q 002961 471 GVGASRV-RSLYQEAKDN-APSVVFIDELDAVGRE-------------R----G--LIKGSGGQERDATLNQLLVCLDGF 529 (862)
Q Consensus 471 gq~~~~l-~~~f~~a~~~-~p~iL~iDEid~l~~~-------------~----~--~~~~Sgge~~r~~l~~LL~~Ld~~ 529 (862)
.|....+ .++.+++.-. .|+. --+++...+.. . + ...=|||++.|..+++.+ +
T Consensus 554 ~Q~~~lf~gTI~eNi~l~~~~~~-~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARal-----l 627 (708)
T TIGR01193 554 PQEPYIFSGSILENLLLGAKENV-SQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARAL-----L 627 (708)
T ss_pred ecCceehhHHHHHHHhccCCCCC-CHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHH-----h
Confidence 5543322 4555555543 2331 11222221110 0 0 011189999999998877 3
Q ss_pred cCCCcEEEEEecCCC
Q 002961 530 EGRGNVITIASTNRP 544 (862)
Q Consensus 530 ~~~~~vlvI~tTN~~ 544 (862)
.++.-+++..+|...
T Consensus 628 ~~p~iliLDE~Ts~L 642 (708)
T TIGR01193 628 TDSKVLILDESTSNL 642 (708)
T ss_pred hCCCEEEEeCccccC
Confidence 333334444555443
No 343
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.75 E-value=3.4e-05 Score=81.14 Aligned_cols=53 Identities=19% Similarity=0.130 Sum_probs=40.7
Q ss_pred cccCccccccccc----cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 409 LERGVDVKFSDMY----RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 409 ~~~~~s~~~~~~~----~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
.++++++.|++.. .++.+..+.-++|+||+||||||++|.|-+-+.+..|.|-
T Consensus 3 ~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~ 59 (309)
T COG1125 3 EFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59 (309)
T ss_pred eeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEE
Confidence 3456666666422 2666777777999999999999999999998888777763
No 344
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.74 E-value=8.6e-05 Score=80.47 Aligned_cols=40 Identities=25% Similarity=0.223 Sum_probs=35.0
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+||||+|||||+++|+|.+.+..|.+..
T Consensus 33 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~ 72 (267)
T PRK15112 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLI 72 (267)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 6778888899999999999999999999998777776644
No 345
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.74 E-value=9.5e-05 Score=85.86 Aligned_cols=180 Identities=23% Similarity=0.246 Sum_probs=96.3
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh-----hcccchhhH----HHHHHHHHhcCCceeEhHHH
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV----RSLYQEAKDNAPSVVFIDEL 497 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~-----~~gq~~~~l----~~~f~~a~~~~p~iL~iDEi 497 (862)
..++|+|++||||++++++|.... +.+++.++|..+... .+|...... ......+.....+.|||||+
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i 242 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEI 242 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEech
Confidence 457999999999999999997654 457888988875322 122111000 00000011234568999999
Q ss_pred HHhhhhccCcCCCCchhHHHHHHHHHHhhcccc----C-----CCcEEEEEecCCC-------CCCCccccCCCCccccc
Q 002961 498 DAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----G-----RGNVITIASTNRP-------DILDPALVRPGRFDRKI 561 (862)
Q Consensus 498 d~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~----~-----~~~vlvI~tTN~~-------~~Ld~aLlrpgRfd~~I 561 (862)
+.+... ....|+..++.-. + ..++-+|++|+.. ..+.+.|.. |+. .+
T Consensus 243 ~~l~~~--------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~ 305 (445)
T TIGR02915 243 GDLPLN--------------LQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EI 305 (445)
T ss_pred hhCCHH--------------HHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cc
Confidence 998654 5566666665321 1 1257788888653 223344433 433 23
Q ss_pred cCCCCCHHhHH----HHHHHHHccC----CC----CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHH
Q 002961 562 FIPKPGLIGRM----EILKVHARKK----PM----ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDL 629 (862)
Q Consensus 562 ~~~~P~~~~R~----~Il~~~l~~~----~~----~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl 629 (862)
.+..|...+|. .++.+++... .. ..+..+..|....---+.+++.++++.|+.. .....|+.+++
T Consensus 306 ~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~---~~~~~i~~~~l 382 (445)
T TIGR02915 306 SITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIM---AEGNQITAEDL 382 (445)
T ss_pred eecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHh---CCCCcccHHHc
Confidence 44445444443 3555554321 11 1122233333333223457777888777643 22345766665
No 346
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.74 E-value=0.00011 Score=77.41 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=34.2
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 23 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (229)
T cd03254 23 NFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62 (229)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 5677788889999999999999999999998777776643
No 347
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.73 E-value=7.3e-05 Score=89.83 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=46.1
Q ss_pred ccccCccccccc----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++ .+ .++.+++++.++|+||+|+|||||++.|+|...+..|.+...
T Consensus 339 i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~ 400 (574)
T PRK11160 339 LTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLN 400 (574)
T ss_pred EEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 677788888853 12 277888889999999999999999999999998887877554
No 348
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.72 E-value=5.1e-05 Score=91.42 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=44.5
Q ss_pred ccccCccccccc---cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSD---MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~---~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++ .+ .++.+.+++.++|+|++|+|||||++.|+|...+..|.+..
T Consensus 335 I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i 394 (588)
T PRK13657 335 VEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILI 394 (588)
T ss_pred EEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 667788877753 22 27788888999999999999999999999998887776643
No 349
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.72 E-value=5.5e-05 Score=86.65 Aligned_cols=55 Identities=27% Similarity=0.303 Sum_probs=43.1
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++. + .++.+..+..++|.||||+|||||+++|+|.+.+..|.+..
T Consensus 4 L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l 62 (402)
T PRK09536 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLV 62 (402)
T ss_pred EEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEE
Confidence 4456666666542 1 37778888889999999999999999999998777776643
No 350
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=8.2e-05 Score=86.52 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=46.1
Q ss_pred ccccCcccccccc-----ccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeeccc
Q 002961 408 YLERGVDVKFSDM-----YRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 464 (862)
Q Consensus 408 l~~~~~s~~~~~~-----~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~ 464 (862)
+..+++++.|++. ..++.+.++..+.|+|++|+|||||+.+|+|.+.+..|++.+.+
T Consensus 321 i~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng 382 (559)
T COG4988 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNG 382 (559)
T ss_pred eeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECC
Confidence 4455777777652 13788888899999999999999999999999988888886653
No 351
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.71 E-value=4.1e-05 Score=82.43 Aligned_cols=71 Identities=30% Similarity=0.478 Sum_probs=47.7
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhcccch-hhHH-HHHHHHHhcCCceeEhHHHHHh
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGA-SRVR-SLYQEAKDNAPSVVFIDELDAV 500 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~gq~~-~~l~-~~f~~a~~~~p~iL~iDEid~l 500 (862)
.+.+++|+||+|+|||+|+-+|+.++ +..+.+++..+++........ .... .+...+ ...++|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 67889999999999999999999876 677778887776654211111 1111 122212 23469999998553
No 352
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.71 E-value=4.4e-05 Score=86.11 Aligned_cols=52 Identities=23% Similarity=0.245 Sum_probs=39.4
Q ss_pred ccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 410 ERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 410 ~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
++++++.|++. + .++.+..+..++|.||||+|||||+++|+|...+..|.+.
T Consensus 5 i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~ 60 (353)
T PRK10851 5 IANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIR 60 (353)
T ss_pred EEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 34555555431 1 3677788889999999999999999999998877666654
No 353
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.71 E-value=2.5e-05 Score=86.18 Aligned_cols=53 Identities=15% Similarity=0.124 Sum_probs=40.9
Q ss_pred ccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 410 ERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 410 ~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++++++.|++. + .++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 5 ~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i 61 (301)
T TIGR03522 5 VSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV 61 (301)
T ss_pred EEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 44555555431 1 26778888889999999999999999999998887777653
No 354
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.70 E-value=6.6e-05 Score=76.56 Aligned_cols=55 Identities=15% Similarity=0.012 Sum_probs=41.3
Q ss_pred cccCccccccccc-----cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 409 LERGVDVKFSDMY-----RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 409 ~~~~~s~~~~~~~-----~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
.+.++++.|++.. .+|....+.-+.|.|+||+||||+++.||.-+.+..|.+...
T Consensus 3 ~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~id 62 (245)
T COG4555 3 EVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTID 62 (245)
T ss_pred eeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEe
Confidence 3445555665522 256677777799999999999999999999998877776433
No 355
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.70 E-value=0.0025 Score=76.22 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=44.2
Q ss_pred ccccCccccccc----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSD----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+..+++++.|++ .+ .++.+.++..++|+||+|+|||||+++|+|...+..|.+..
T Consensus 317 i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 377 (544)
T TIGR01842 317 LSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRL 377 (544)
T ss_pred EEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 666777777742 12 37888888999999999999999999999998877776644
No 356
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.69 E-value=6.3e-05 Score=90.27 Aligned_cols=56 Identities=20% Similarity=0.141 Sum_probs=45.0
Q ss_pred ccccCccccccc-----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD-----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~-----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|+. .+ .++.+.+++.++|+|++|+|||||+++|+|...+..|.+...
T Consensus 338 i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~ 400 (576)
T TIGR02204 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLD 400 (576)
T ss_pred EEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEEC
Confidence 667778877752 12 278888999999999999999999999999988877766443
No 357
>PF05729 NACHT: NACHT domain
Probab=97.69 E-value=0.00021 Score=70.46 Aligned_cols=139 Identities=18% Similarity=0.168 Sum_probs=69.8
Q ss_pred eEEEECCCCCchhHHHHHHHhhccC---------ceeeeecccchhh--------h----cccchhhHHHHHH-HHHhcC
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGV---------NFFSISASQFVEI--------Y----VGVGASRVRSLYQ-EAKDNA 488 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~---------~~~~i~~~~~~~~--------~----~gq~~~~l~~~f~-~a~~~~ 488 (862)
-++|+|++|+||||+++.++..+.. ..+.+.+...... + .......+...+. ......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 3689999999999999999876511 1222222221111 0 0111111122122 223344
Q ss_pred CceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcc-ccCCCcEEEEEecCC--CCCCCccccCCCCccccccCCC
Q 002961 489 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG-FEGRGNVITIASTNR--PDILDPALVRPGRFDRKIFIPK 565 (862)
Q Consensus 489 p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~-~~~~~~vlvI~tTN~--~~~Ld~aLlrpgRfd~~I~~~~ 565 (862)
..+++||.+|.+...... ++.......+..+ +.. ... ++-++.|+.. ...+...+... ..+.+++
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l---~~~~~~~--~~~liit~r~~~~~~~~~~~~~~----~~~~l~~ 149 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQL---LPQALPP--GVKLIITSRPRAFPDLRRRLKQA----QILELEP 149 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHH---hhhccCC--CCeEEEEEcCChHHHHHHhcCCC----cEEEECC
Confidence 567899999998653211 0111112222233 332 122 2333333332 22233222221 4688888
Q ss_pred CCHHhHHHHHHHHHcc
Q 002961 566 PGLIGRMEILKVHARK 581 (862)
Q Consensus 566 P~~~~R~~Il~~~l~~ 581 (862)
.+.++..++++.++..
T Consensus 150 ~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 150 FSEEDIKQYLRKYFSN 165 (166)
T ss_pred CCHHHHHHHHHHHhhc
Confidence 9999999999988753
No 358
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.68 E-value=7.4e-05 Score=88.83 Aligned_cols=56 Identities=23% Similarity=0.245 Sum_probs=45.2
Q ss_pred ccccCccccccc----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+..+++++.|++ .+ .++.++++..++|+||+|+|||||++.|+|...+..|.+...
T Consensus 321 i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~ 382 (529)
T TIGR02857 321 LEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVN 382 (529)
T ss_pred EEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 667788887754 12 277888889999999999999999999999988877776443
No 359
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.68 E-value=7.5e-05 Score=91.97 Aligned_cols=56 Identities=14% Similarity=0.112 Sum_probs=45.5
Q ss_pred ccccCccccccc-----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD-----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~-----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+..+++++.|++ .+ .++.++++..++|+||+|+|||||++.|+|...+..|.+...
T Consensus 479 I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~id 541 (711)
T TIGR00958 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLD 541 (711)
T ss_pred EEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEEC
Confidence 667788887753 12 378888899999999999999999999999998877776543
No 360
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.68 E-value=0.00012 Score=75.79 Aligned_cols=41 Identities=29% Similarity=0.263 Sum_probs=35.6
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+...
T Consensus 25 s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~ 65 (204)
T cd03250 25 NLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVP 65 (204)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEc
Confidence 57778888999999999999999999999988777777543
No 361
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.00032 Score=76.80 Aligned_cols=128 Identities=17% Similarity=0.243 Sum_probs=81.2
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCc-------eeee-ecc-----cchhh-hc---cc--chhhHHHHHHHHHh-
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN-------FFSI-SAS-----QFVEI-YV---GV--GASRVRSLYQEAKD- 486 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~-------~~~i-~~~-----~~~~~-~~---gq--~~~~l~~~f~~a~~- 486 (862)
+.+..++|+|| +||++++..+|..+-.. .+.+ +|. ...+. ++ |. ..+.++.+...+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 55677899996 68999999999865221 1111 000 00000 11 11 12334555555433
Q ss_pred ---cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccC
Q 002961 487 ---NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFI 563 (862)
Q Consensus 487 ---~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~ 563 (862)
....|++||++|.+... ..|.||..|+. ++.++++|.+|+.++.+.|.++|++ . +|.|
T Consensus 100 p~~~~~kV~II~~ad~m~~~--------------AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~SRc--q-~i~f 160 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHVN--------------AANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKSRT--Q-IFHF 160 (290)
T ss_pred cccCCcEEEEeehhhhcCHH--------------HHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHHcc--e-eeeC
Confidence 22358999999998654 78999999985 4456788888888999999999944 3 7778
Q ss_pred CCCCHHhHHHHHH
Q 002961 564 PKPGLIGRMEILK 576 (862)
Q Consensus 564 ~~P~~~~R~~Il~ 576 (862)
+. +.+...+++.
T Consensus 161 ~~-~~~~~~~~L~ 172 (290)
T PRK07276 161 PK-NEAYLIQLLE 172 (290)
T ss_pred CC-cHHHHHHHHH
Confidence 65 5555445553
No 362
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=7.8e-05 Score=85.04 Aligned_cols=130 Identities=20% Similarity=0.234 Sum_probs=71.5
Q ss_pred ccCccccccccc----cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeee--c-ccchhhhcccc-hh-hHHHH
Q 002961 410 ERGVDVKFSDMY----RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS--A-SQFVEIYVGVG-AS-RVRSL 480 (862)
Q Consensus 410 ~~~~s~~~~~~~----~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~--~-~~~~~~~~gq~-~~-~l~~~ 480 (862)
..+.++.|+... .++.+..+++..|+|+||+|||||+++|+.. +.....+. + +.......... .+ ....+
T Consensus 83 ~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~-~v~~f~veqE~~g~~t~~~~~~l~~D~~~~df 161 (582)
T KOG0062|consen 83 IDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANG-QVSGFHVEQEVRGDDTEALQSVLESDTERLDF 161 (582)
T ss_pred eeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhc-CcCccCchhheeccchHHHhhhhhccHHHHHH
Confidence 344555555421 3788899999999999999999999999981 11111110 0 00000000000 00 00111
Q ss_pred HHHHHhcCCceeEhHHHHH-hhhhccCcCC---------CCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCC
Q 002961 481 YQEAKDNAPSVVFIDELDA-VGRERGLIKG---------SGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 546 (862)
Q Consensus 481 f~~a~~~~p~iL~iDEid~-l~~~~~~~~~---------Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~ 546 (862)
+..-...... +-++||-. ++...+|..+ |||=+++..|+..| +...+-+++..+||+.|.
T Consensus 162 l~~e~~l~~~-~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAl-----f~~pDlLLLDEPTNhLDv 231 (582)
T KOG0062|consen 162 LAEEKELLAG-LTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARAL-----FAKPDLLLLDEPTNHLDV 231 (582)
T ss_pred HHhhhhhhcc-chHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHH-----hcCCCEEeecCCcccchh
Confidence 1110000001 13345443 4433333222 89999999999888 666677788899998876
No 363
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.65 E-value=0.00024 Score=83.67 Aligned_cols=169 Identities=19% Similarity=0.227 Sum_probs=87.5
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceeeee-cccch------hhhccc---c---hhhHHHHHHHH-----Hh------
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFSIS-ASQFV------EIYVGV---G---ASRVRSLYQEA-----KD------ 486 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~-~~~~~------~~~~gq---~---~~~l~~~f~~a-----~~------ 486 (862)
-++|+||+||||||++++||.+++..+.+.. ...+. ..|.+. . ... ...|... +.
T Consensus 47 iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq-~~~F~~f~l~~s~y~~l~~~ 125 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQ-SDKFSEFLLRASKYSSLSMS 125 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccch-hhhhcccccccccccccccc
Confidence 4678999999999999999999987666542 11100 001110 0 000 1112111 11
Q ss_pred -----cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCC-cEEEEEec-------CCC--------C
Q 002961 487 -----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRG-NVITIAST-------NRP--------D 545 (862)
Q Consensus 487 -----~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~-~vlvI~tT-------N~~--------~ 545 (862)
....||+++|+=..... ++ ...+..+..++ .. ... .+++|.+- |.. .
T Consensus 126 g~~~~~~~kvILVEDlPN~~~~-----~~--~~f~~~L~~~l---~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~ 193 (519)
T PF03215_consen 126 GSNSSSNKKVILVEDLPNVFHR-----DT--SRFREALRQYL---RS--SRCLPLVFIISETESLSGDNSYRSNSFTAER 193 (519)
T ss_pred CCCcCCCceEEEeeccccccch-----hH--HHHHHHHHHHH---Hc--CCCCCEEEEEecccccCCCCcccccchhhhh
Confidence 23568888887543221 11 23333333333 21 222 56666661 111 1
Q ss_pred CCCccccCCCCccccccCCCCCHHhHHHHHHHHHccC--------CCCCccc-HHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 002961 546 ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK--------PMADDVD-YLAVASMTDGMVGAELANIVEVAAINM 616 (862)
Q Consensus 546 ~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~--------~~~~~~d-l~~lA~~t~G~s~adI~~lv~~A~~~A 616 (862)
.+++.++...++. +|.|.+-...-....|...+... ....... ++.|+..+. +||+.+++.....+
T Consensus 194 L~~~~il~~~~i~-~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~ 268 (519)
T PF03215_consen 194 LFPKEILNHPGIT-RIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWC 268 (519)
T ss_pred ccCHHHHhCCCce-EEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHh
Confidence 3566666544444 68888766655555554444321 1222222 566766654 58888888776666
Q ss_pred H
Q 002961 617 M 617 (862)
Q Consensus 617 ~ 617 (862)
.
T Consensus 269 ~ 269 (519)
T PF03215_consen 269 L 269 (519)
T ss_pred c
Confidence 5
No 364
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.65 E-value=6.3e-05 Score=90.60 Aligned_cols=55 Identities=22% Similarity=0.195 Sum_probs=42.0
Q ss_pred ccccCccccc-cc--cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKF-SD--MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~-~~--~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+..+++++.+ ++ .+ .++.++++..++|+||+|+|||||++.|++.. +..|.+...
T Consensus 350 i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~ 409 (588)
T PRK11174 350 IEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKIN 409 (588)
T ss_pred EEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEEC
Confidence 5556666433 22 12 37888889999999999999999999999998 777777544
No 365
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.64 E-value=7.2e-05 Score=82.67 Aligned_cols=70 Identities=27% Similarity=0.416 Sum_probs=46.4
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhccc-chhhHHHHHHHHHhcCCceeEhHHHHH
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV-GASRVRSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~gq-~~~~l~~~f~~a~~~~p~iL~iDEid~ 499 (862)
.+.+++|+||+|+|||+|+.+|+.++ +..+..+....+...+... ....+...++.+. ..++|+|||+..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~ 228 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGA 228 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCC
Confidence 45689999999999999999999987 5666667666554432111 0011233444432 356999999854
No 366
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.64 E-value=4.4e-05 Score=83.32 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=34.9
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+|+||+|||||+++|+|.+.+..|.+..
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 66 (279)
T PRK13650 27 SFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIII 66 (279)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 6778888899999999999999999999998777776643
No 367
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.63 E-value=4.1e-05 Score=85.38 Aligned_cols=70 Identities=24% Similarity=0.439 Sum_probs=46.2
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhccc---chhhHHHHHHHHHhcCCceeEhHHHHHh
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV---GASRVRSLYQEAKDNAPSVVFIDELDAV 500 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~gq---~~~~l~~~f~~a~~~~p~iL~iDEid~l 500 (862)
..+++|+||+|+|||+|+.+||.++ +..+.+++..++...+... ........++.+. ..++|+||++...
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e 258 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE 258 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC
Confidence 3789999999999999999999976 5677777776655432110 0011111233332 3469999998654
No 368
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.63 E-value=0.00015 Score=75.90 Aligned_cols=40 Identities=25% Similarity=0.213 Sum_probs=34.2
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 24 ~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 63 (220)
T cd03245 24 SLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLL 63 (220)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEE
Confidence 5777888889999999999999999999988766666643
No 369
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.63 E-value=4.4e-05 Score=79.87 Aligned_cols=40 Identities=18% Similarity=0.237 Sum_probs=35.2
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+||||+|||||+++|+|.+.+..|.+..
T Consensus 24 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 63 (218)
T cd03255 24 SLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRV 63 (218)
T ss_pred EEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEE
Confidence 5777888889999999999999999999998887777754
No 370
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.63 E-value=6.6e-05 Score=89.33 Aligned_cols=53 Identities=17% Similarity=0.240 Sum_probs=40.1
Q ss_pred ccCccccccc--cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 410 ERGVDVKFSD--MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 410 ~~~~s~~~~~--~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++++++.|++ .+ .++.+..+..++|+||||+|||||+++|+|.+.+..|.+..
T Consensus 4 i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~ 60 (530)
T PRK15064 4 TANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSL 60 (530)
T ss_pred EEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 3455555543 12 26778888899999999999999999999988776666554
No 371
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.62 E-value=0.0001 Score=83.19 Aligned_cols=40 Identities=25% Similarity=0.237 Sum_probs=34.5
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 18 sl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~ 57 (352)
T PRK11144 18 NLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVL 57 (352)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 5677888889999999999999999999988777776643
No 372
>PRK06921 hypothetical protein; Provisional
Probab=97.62 E-value=5.4e-05 Score=82.08 Aligned_cols=68 Identities=28% Similarity=0.286 Sum_probs=42.8
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc----cCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHH
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA----GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELD 498 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l----~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid 498 (862)
.+.+++|+|++|+|||+|+.+|+.++ +..+++++..++....... .......++.+ ...++|+|||++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~ 187 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLF 187 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEeccc
Confidence 35679999999999999999999976 4455666654433221110 11112222222 345799999993
No 373
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.62 E-value=5e-05 Score=83.82 Aligned_cols=40 Identities=20% Similarity=0.096 Sum_probs=35.0
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+||||+|||||+++|+|.+.+..|.+..
T Consensus 13 s~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~ 52 (302)
T TIGR01188 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARV 52 (302)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 4677888889999999999999999999998887777654
No 374
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.61 E-value=0.00016 Score=74.97 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=25.5
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
++.+..++-++|+||||+|||||++.|++..
T Consensus 19 ~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 19 DIDMEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred eEEEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 4555556778999999999999999999743
No 375
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.60 E-value=4.6e-05 Score=79.07 Aligned_cols=40 Identities=28% Similarity=0.222 Sum_probs=34.2
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhcc---Cceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG---VNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~---~~~~~i~~ 462 (862)
++.+..+..++|+||||+|||||+++|+|... +..|.+.+
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i 69 (202)
T cd03233 27 SGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHY 69 (202)
T ss_pred EEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEE
Confidence 67778888899999999999999999999876 56666654
No 376
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.60 E-value=0.0012 Score=69.88 Aligned_cols=191 Identities=17% Similarity=0.181 Sum_probs=111.0
Q ss_pred cccCC-eEEEECCCCCchhHHHHHHHhhccCce---eeeeccc-----chhhh----cccchhhH--------HHHHHHH
Q 002961 426 VRIPG-GILLCGPPGVGKTLLAKAVAGEAGVNF---FSISASQ-----FVEIY----VGVGASRV--------RSLYQEA 484 (862)
Q Consensus 426 i~~~~-~vlL~GpnGtGKTtLakaLA~~l~~~~---~~i~~~~-----~~~~~----~gq~~~~l--------~~~f~~a 484 (862)
+..+. .+.++|+-|+|||++++++...+...- +.++-.. +.... ..+....+ +.+.+..
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~ 126 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALV 126 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Confidence 34444 477999999999999997776653221 2222111 11111 11111111 2223333
Q ss_pred Hh-cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCC-C---ccccCCCCccc
Q 002961 485 KD-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL-D---PALVRPGRFDR 559 (862)
Q Consensus 485 ~~-~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~L-d---~aLlrpgRfd~ 559 (862)
.. ..|-++++||.+.+...-. ..+..|...-++..+.-.+++|+-...-..+ - ..+-. |++.
T Consensus 127 ~~g~r~v~l~vdEah~L~~~~l-----------e~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~--R~~i 193 (269)
T COG3267 127 KKGKRPVVLMVDEAHDLNDSAL-----------EALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQ--RIDI 193 (269)
T ss_pred HhCCCCeEEeehhHhhhChhHH-----------HHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhh--eEEE
Confidence 33 3457899999988865411 1222222222223333345666643111100 0 12223 7876
Q ss_pred cccCCCCCHHhHHHHHHHHHccCC----CCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHH
Q 002961 560 KIFIPKPGLIGRMEILKVHARKKP----MADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 630 (862)
Q Consensus 560 ~I~~~~P~~~~R~~Il~~~l~~~~----~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~ 630 (862)
.|.+++.+.++-...+++++..-. +.++-.+..+...+.| .|+-|.+++..|...|...+...|+...+.
T Consensus 194 r~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 194 RIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred EEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 789999999988888998886543 3344456667777777 677899999999999998888888876654
No 377
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.60 E-value=0.00012 Score=90.12 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=45.4
Q ss_pred ccccCccccccc----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++ .+ .++.+.++..++|+|++|+|||||+++|+|...+..|.+...
T Consensus 456 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~id 517 (694)
T TIGR01846 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVD 517 (694)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 667788888742 22 377778888999999999999999999999988877776544
No 378
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.59 E-value=0.00012 Score=86.76 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=43.2
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|.+.+..|.+..
T Consensus 12 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~ 70 (510)
T PRK15439 12 LCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEI 70 (510)
T ss_pred EEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 5566777777542 2 36777788889999999999999999999998777777654
No 379
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=5.4e-05 Score=80.27 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=35.8
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+...
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~ 60 (235)
T cd03261 20 DLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID 60 (235)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 57788888899999999999999999999988877777543
No 380
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.57 E-value=0.00012 Score=88.22 Aligned_cols=55 Identities=18% Similarity=0.176 Sum_probs=44.3
Q ss_pred ccccCccccccc---cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSD---MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~---~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++ .+ .++.+..+..++|+||+|+|||||++.|+|...+..|.+..
T Consensus 335 i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 394 (585)
T TIGR01192 335 VEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILI 394 (585)
T ss_pred EEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEE
Confidence 666777777753 12 27778888999999999999999999999998877776644
No 381
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=5e-05 Score=83.03 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=30.9
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCce
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF 457 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~ 457 (862)
++.+..+..++|+||||+|||||+++|+|.+.+..
T Consensus 27 ~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~ 61 (282)
T PRK13640 27 SFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD 61 (282)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCC
Confidence 67778888899999999999999999999886654
No 382
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=6e-05 Score=79.75 Aligned_cols=41 Identities=20% Similarity=0.157 Sum_probs=35.7
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+.+.
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 65 (233)
T cd03258 25 SLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVD 65 (233)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 57778888999999999999999999999988777776543
No 383
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.57 E-value=0.00012 Score=88.29 Aligned_cols=56 Identities=23% Similarity=0.210 Sum_probs=44.8
Q ss_pred ccccCccccccc---cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD---MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~---~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++ .+ .++.++++..++|+|++|+|||||++.|+|...+..|.+...
T Consensus 341 i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~id 401 (592)
T PRK10790 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLD 401 (592)
T ss_pred EEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEEC
Confidence 566777777753 22 277888889999999999999999999999988877776543
No 384
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.57 E-value=0.00015 Score=84.62 Aligned_cols=185 Identities=17% Similarity=0.201 Sum_probs=101.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh-----hcccchhhH----HHHHHHHHhcCCceeEhHHH
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV----RSLYQEAKDNAPSVVFIDEL 497 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~-----~~gq~~~~l----~~~f~~a~~~~p~iL~iDEi 497 (862)
..+++.|.+||||++++++|.... ..+++.++|+.+... .+|.....+ ............+.|||||+
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei 237 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEI 237 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEch
Confidence 357999999999999999998753 568889998765322 222211100 00000111233568999999
Q ss_pred HHhhhhccCcCCCCchhHHHHHHHHHHhhcccc----C-----CCcEEEEEecCCCC-------CCCccccCCCCcc-cc
Q 002961 498 DAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----G-----RGNVITIASTNRPD-------ILDPALVRPGRFD-RK 560 (862)
Q Consensus 498 d~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~----~-----~~~vlvI~tTN~~~-------~Ld~aLlrpgRfd-~~ 560 (862)
+.+... ....|+..++.-. + ..++-+|++|+..- .+.+.|.. |+. ..
T Consensus 238 ~~l~~~--------------~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~ 301 (463)
T TIGR01818 238 GDMPLD--------------AQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIR 301 (463)
T ss_pred hhCCHH--------------HHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcce
Confidence 988654 4455665554321 0 12466788776431 23334433 443 35
Q ss_pred ccCCCCC--HHhHHHHHHHHHccC----CC-CCccc---HHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHH
Q 002961 561 IFIPKPG--LIGRMEILKVHARKK----PM-ADDVD---YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 630 (862)
Q Consensus 561 I~~~~P~--~~~R~~Il~~~l~~~----~~-~~~~d---l~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~ 630 (862)
|.+|+.. .++...++.+++... .. ...+. +..|....---+.++|.++++.++..+ ....|+.+|+.
T Consensus 302 i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~ 378 (463)
T TIGR01818 302 IHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLP 378 (463)
T ss_pred ecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHhch
Confidence 6666654 455666666665332 11 01222 333333321123477888888776433 33468888876
Q ss_pred HHH
Q 002961 631 QAA 633 (862)
Q Consensus 631 ~Al 633 (862)
..+
T Consensus 379 ~~~ 381 (463)
T TIGR01818 379 AEL 381 (463)
T ss_pred HHH
Confidence 544
No 385
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.57 E-value=0.00011 Score=78.55 Aligned_cols=109 Identities=18% Similarity=0.127 Sum_probs=71.9
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccch----------hh-----------------hccc--c
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV----------EI-----------------YVGV--G 473 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~----------~~-----------------~~gq--~ 473 (862)
+|.+..++.+.|+|.+||||||++++|.+-..+..|.|....-. .. |..+ +
T Consensus 33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 57788899999999999999999999999998888887544210 00 1111 1
Q ss_pred hhhHHHHHHHHHhcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCC
Q 002961 474 ASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 544 (862)
Q Consensus 474 ~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~ 544 (862)
.++-+-.+..+....|.+++.||.-+.+.-. +.++++..|..++..-++..+..|++.
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSaLDvS-------------iqaqIlnLL~dlq~~~~lt~lFIsHDL 170 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSALDVS-------------VQAQILNLLKDLQEELGLTYLFISHDL 170 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhhcchh-------------HHHHHHHHHHHHHHHhCCeEEEEEEEH
Confidence 1122445555667789999999987765431 444555555555554455666666543
No 386
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.56 E-value=0.00011 Score=82.20 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=29.2
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
+|.+..++.+.|+|+||+|||||+++|+|.+.
T Consensus 27 sl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 27 SYSVKQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 67788888899999999999999999999875
No 387
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.55 E-value=0.00015 Score=87.08 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=43.2
Q ss_pred ccccCccccccc----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSD----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|+. .+ .++.+.++..++|+||||+|||||+++|+|...+..|.+..
T Consensus 314 I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~ 374 (569)
T PRK10789 314 LDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRF 374 (569)
T ss_pred EEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEE
Confidence 455666666642 12 26778888899999999999999999999998887777654
No 388
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.55 E-value=6.1e-05 Score=78.46 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=35.4
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+.++..++|.||||+|||||+++|+|...+..|.+...
T Consensus 20 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (213)
T cd03262 20 DLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60 (213)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 57778888999999999999999999999987777776543
No 389
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.54 E-value=0.00028 Score=82.19 Aligned_cols=179 Identities=23% Similarity=0.302 Sum_probs=97.1
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh-----hcccchhhH-------HHHHHHHHhcCCceeEh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV-------RSLYQEAKDNAPSVVFI 494 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~-----~~gq~~~~l-------~~~f~~a~~~~p~iL~i 494 (862)
..+++.|++|+||++++++|.... +.+++.++|..+... .+|...... ...+ .....+.+||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~---~~a~~gtl~l 243 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLF---ERANEGTLLL 243 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCce---EECCCCEEEE
Confidence 458999999999999999997653 568888888765322 222111000 0011 1223468999
Q ss_pred HHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc----C-----CCcEEEEEecCCCC-------CCCccccCCCCcc
Q 002961 495 DELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----G-----RGNVITIASTNRPD-------ILDPALVRPGRFD 558 (862)
Q Consensus 495 DEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~----~-----~~~vlvI~tTN~~~-------~Ld~aLlrpgRfd 558 (862)
||++.+... ....|+..++.-. + ..++.+|++||..- .+.+.+.. |+.
T Consensus 244 d~i~~l~~~--------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~ 307 (457)
T PRK11361 244 DEIGEMPLV--------------LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN 307 (457)
T ss_pred echhhCCHH--------------HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc
Confidence 999998654 4566666655321 1 13478888887531 23333332 332
Q ss_pred ccccCCCCCHHhHH----HHHHHHHccC----CCC-Cccc---HHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCH
Q 002961 559 RKIFIPKPGLIGRM----EILKVHARKK----PMA-DDVD---YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 626 (862)
Q Consensus 559 ~~I~~~~P~~~~R~----~Il~~~l~~~----~~~-~~~d---l~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~ 626 (862)
.+.+..|...+|. .++..++... ... ..++ +..+....---+.+++.++++.+... .....|+.
T Consensus 308 -~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~---~~~~~i~~ 383 (457)
T PRK11361 308 -VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM---NSGPIIFS 383 (457)
T ss_pred -cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh---CCCCcccH
Confidence 3445555554443 3444444321 111 1122 23333332223557777887776643 33446777
Q ss_pred HHHHH
Q 002961 627 DDLLQ 631 (862)
Q Consensus 627 edl~~ 631 (862)
+|+..
T Consensus 384 ~~l~~ 388 (457)
T PRK11361 384 EDLPP 388 (457)
T ss_pred HHChH
Confidence 77643
No 390
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.54 E-value=0.00013 Score=86.40 Aligned_cols=55 Identities=22% Similarity=0.168 Sum_probs=42.7
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 6 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~ 64 (510)
T PRK09700 6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITI 64 (510)
T ss_pred EEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEE
Confidence 5556677666542 2 26777788889999999999999999999998777776643
No 391
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.54 E-value=7.2e-05 Score=78.89 Aligned_cols=56 Identities=23% Similarity=0.182 Sum_probs=42.5
Q ss_pred ccccCccccccc--cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD--MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~--~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++ .+ .++.+..+..++|+||||+|||||+++|+|...+..|.+.+.
T Consensus 8 i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 67 (225)
T PRK10247 8 LQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFE 67 (225)
T ss_pred EEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEEC
Confidence 445555555543 12 267788888899999999999999999999887777776543
No 392
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.54 E-value=0.00011 Score=83.07 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=33.7
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+.
T Consensus 13 s~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~ 51 (363)
T TIGR01186 13 DLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIF 51 (363)
T ss_pred EEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEE
Confidence 467788889999999999999999999998877766553
No 393
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.53 E-value=6.4e-05 Score=79.37 Aligned_cols=41 Identities=32% Similarity=0.211 Sum_probs=36.1
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|+|+||+|||||+++|+|...+..|++.+.
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (230)
T TIGR03410 20 SLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLD 60 (230)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEEC
Confidence 67788888999999999999999999999988877777654
No 394
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.53 E-value=7.6e-05 Score=80.98 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=43.8
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|...+..|.+...
T Consensus 8 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 67 (269)
T PRK11831 8 VDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFD 67 (269)
T ss_pred EEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 5566666666542 2 367788888899999999999999999999987777776543
No 395
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=0.00029 Score=75.53 Aligned_cols=121 Identities=12% Similarity=0.089 Sum_probs=78.4
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccc-----------hhhhc--cc----chhhHHHHHHHHHh---
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF-----------VEIYV--GV----GASRVRSLYQEAKD--- 486 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~-----------~~~~~--gq----~~~~l~~~f~~a~~--- 486 (862)
..|..++|+||.|+||..++..+|..+-..-..-.|+.. .+.++ .. ..+.++.+.+.+..
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 456789999999999999999999865221110011110 00010 11 12233444443321
Q ss_pred --cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCC
Q 002961 487 --NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIP 564 (862)
Q Consensus 487 --~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~ 564 (862)
....|++|+++|.+... ..|.||..++. +..++++|..|+.++.+.|.+++ |.. .+.|+
T Consensus 85 e~~~~KV~II~~ae~m~~~--------------AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNKQ--------------SANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCV-QYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhhCHH--------------HHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--hee-eeecC
Confidence 22468889999888654 78999999985 45678889999999999999999 543 45666
Q ss_pred CC
Q 002961 565 KP 566 (862)
Q Consensus 565 ~P 566 (862)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 65
No 396
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.53 E-value=0.00012 Score=82.77 Aligned_cols=140 Identities=22% Similarity=0.353 Sum_probs=78.6
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhccC-ceeeeecccchhhh------cccchhhHHHHHHHHHhcCCceeEhHHHH
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEAGV-NFFSISASQFVEIY------VGVGASRVRSLYQEAKDNAPSVVFIDELD 498 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l~~-~~~~i~~~~~~~~~------~gq~~~~l~~~f~~a~~~~p~iL~iDEid 498 (862)
...|.|+.|+|+.|+|||.|+.+....+.. .-..+....|+... ......-+..+.+.+... ..+|++||+.
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~-~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKE-SRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhc-CCEEEEeeee
Confidence 467899999999999999999999988754 22222222322210 011112233344444333 3489999985
Q ss_pred Hh--hhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHH
Q 002961 499 AV--GRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILK 576 (862)
Q Consensus 499 ~l--~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~ 576 (862)
-- +.. .++..|+..+= ..++++|+|+|.+ |.=+.++.+.+..++| -..+++
T Consensus 138 V~DiaDA-------------mil~rLf~~l~----~~gvvlVaTSN~~----P~~Ly~~gl~r~~Flp------~I~~l~ 190 (362)
T PF03969_consen 138 VTDIADA-------------MILKRLFEALF----KRGVVLVATSNRP----PEDLYKNGLQRERFLP------FIDLLK 190 (362)
T ss_pred ccchhHH-------------HHHHHHHHHHH----HCCCEEEecCCCC----hHHHcCCcccHHHHHH------HHHHHH
Confidence 32 111 14555555442 3578999999872 2222233444333332 245566
Q ss_pred HHHccCCCCCcccHHHH
Q 002961 577 VHARKKPMADDVDYLAV 593 (862)
Q Consensus 577 ~~l~~~~~~~~~dl~~l 593 (862)
.++.-..+....|+...
T Consensus 191 ~~~~vv~ld~~~DyR~~ 207 (362)
T PF03969_consen 191 RRCDVVELDGGVDYRRR 207 (362)
T ss_pred hceEEEEecCCCchhhh
Confidence 66655566666676553
No 397
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.53 E-value=7.1e-05 Score=78.75 Aligned_cols=41 Identities=27% Similarity=0.245 Sum_probs=35.4
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+...
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 65 (228)
T cd03257 25 SFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFD 65 (228)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 57778888899999999999999999999988777776543
No 398
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.52 E-value=6.6e-05 Score=78.69 Aligned_cols=41 Identities=29% Similarity=0.173 Sum_probs=35.4
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+.++..++|+||||+|||||+++|+|...+..|.+...
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 60 (222)
T cd03224 20 SLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD 60 (222)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 57788888999999999999999999999987777766543
No 399
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.52 E-value=0.00022 Score=71.54 Aligned_cols=38 Identities=29% Similarity=0.271 Sum_probs=34.4
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeee
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI 460 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i 460 (862)
+|.+..+..+.++|.||+|||||+|.|+|-..+..|++
T Consensus 33 SFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~i 70 (267)
T COG4167 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEI 70 (267)
T ss_pred EEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceE
Confidence 67788888899999999999999999999988877777
No 400
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.51 E-value=0.00014 Score=87.09 Aligned_cols=55 Identities=18% Similarity=0.085 Sum_probs=42.2
Q ss_pred ccccCcccccc-c--cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFS-D--MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~-~--~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|+ + .+ .++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 5 i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~ 64 (552)
T TIGR03719 5 YTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARP 64 (552)
T ss_pred EEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 44566666665 3 22 26777888889999999999999999999998777676654
No 401
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.51 E-value=8e-05 Score=78.51 Aligned_cols=40 Identities=28% Similarity=0.220 Sum_probs=35.2
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+.+
T Consensus 30 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~ 69 (228)
T PRK10584 30 ELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSL 69 (228)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEE
Confidence 6777888889999999999999999999998877777654
No 402
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.51 E-value=0.00014 Score=75.46 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=25.3
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHh
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAG 451 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~ 451 (862)
++.+..++.++|+||||+|||||+++|++
T Consensus 23 ~~~l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 23 DINLGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEcCCeEEEEECCCCCccHHHHHHHHH
Confidence 45566678899999999999999999994
No 403
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.50 E-value=0.00013 Score=82.31 Aligned_cols=39 Identities=26% Similarity=0.223 Sum_probs=33.6
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+.
T Consensus 17 sl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~ 55 (354)
T TIGR02142 17 DFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIV 55 (354)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 566777888999999999999999999998877767654
No 404
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.50 E-value=8e-05 Score=78.03 Aligned_cols=40 Identities=25% Similarity=0.095 Sum_probs=34.9
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+.+
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (220)
T cd03263 22 SLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYI 61 (220)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 5677888889999999999999999999988877777654
No 405
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=0.0002 Score=84.83 Aligned_cols=55 Identities=24% Similarity=0.245 Sum_probs=41.8
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccC--ceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~--~~~~i~~ 462 (862)
+.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|...+ ..|.+.+
T Consensus 6 l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~ 66 (506)
T PRK13549 6 LEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIF 66 (506)
T ss_pred EEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEE
Confidence 5556666666542 2 2677788888999999999999999999998764 4666643
No 406
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.50 E-value=7.6e-05 Score=78.85 Aligned_cols=40 Identities=25% Similarity=0.171 Sum_probs=34.9
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 59 (232)
T cd03218 20 SLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILL 59 (232)
T ss_pred eeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 5777888889999999999999999999998777776654
No 407
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=0.00011 Score=84.18 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=34.4
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+.+
T Consensus 48 sl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i 87 (400)
T PRK10070 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLI 87 (400)
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEE
Confidence 5677888889999999999999999999988777776643
No 408
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.50 E-value=8.4e-05 Score=79.10 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=41.8
Q ss_pred cccCccccccc--cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 409 LERGVDVKFSD--MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 409 ~~~~~s~~~~~--~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
.++++++.|++ .+ .++.+..+..++|+||||+|||||+++|+|...+..|.+...
T Consensus 5 ~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 63 (241)
T PRK10895 5 TAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIID 63 (241)
T ss_pred EEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 34455555543 11 367788888999999999999999999999988777776543
No 409
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.50 E-value=7.8e-05 Score=78.97 Aligned_cols=40 Identities=30% Similarity=0.173 Sum_probs=34.9
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.||||+|||||+++|+|.+.+..|.+..
T Consensus 20 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 59 (236)
T cd03219 20 SFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLF 59 (236)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEE
Confidence 5777888889999999999999999999988777777654
No 410
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.50 E-value=0.00018 Score=78.04 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=35.3
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+.++..++|.||||+|||||+++|+|...+..|.+.+.
T Consensus 44 s~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~ 84 (264)
T PRK13546 44 SLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRN 84 (264)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEC
Confidence 57788889999999999999999999999987777766543
No 411
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.50 E-value=0.00043 Score=81.03 Aligned_cols=182 Identities=16% Similarity=0.221 Sum_probs=102.1
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh-----hcccchhhH-------HHHHHHHHhcCCceeE
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV-------RSLYQEAKDNAPSVVF 493 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~-----~~gq~~~~l-------~~~f~~a~~~~p~iL~ 493 (862)
...++|.|++|||||+++++|.... +.+++.++|+.+... .+|...... ...++ ....+.+|
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~---~a~~Gtl~ 237 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFE---QADGGTLF 237 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCee---ECCCCEEE
Confidence 3458999999999999999998865 468899998775322 122111100 00111 22345789
Q ss_pred hHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc-----C----CCcEEEEEecCCC-------CCCCccccCCCCc
Q 002961 494 IDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----G----RGNVITIASTNRP-------DILDPALVRPGRF 557 (862)
Q Consensus 494 iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~-----~----~~~vlvI~tTN~~-------~~Ld~aLlrpgRf 557 (862)
|||++.+... ....|+..++.-. + ..++-+|+||+.. ..+.+.|.. ||
T Consensus 238 l~~i~~l~~~--------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l 301 (469)
T PRK10923 238 LDEIGDMPLD--------------VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RL 301 (469)
T ss_pred EeccccCCHH--------------HHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hh
Confidence 9999988654 4556666665321 1 1246788887652 234455555 55
Q ss_pred c-ccccCCCCC--HHhHHHHHHHHHccC----C--C--CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCH
Q 002961 558 D-RKIFIPKPG--LIGRMEILKVHARKK----P--M--ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 626 (862)
Q Consensus 558 d-~~I~~~~P~--~~~R~~Il~~~l~~~----~--~--~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~ 626 (862)
. ..|.+|+.. .++...++.+++... . . ..+..+..|....---+.++|+++++.+... .....|+.
T Consensus 302 ~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~---~~~~~i~~ 378 (469)
T PRK10923 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVM---AAGQEVLI 378 (469)
T ss_pred cceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh---CCCCcccH
Confidence 3 445555442 244555666665331 1 1 1122233333333223557788888777643 23446888
Q ss_pred HHHHHH
Q 002961 627 DDLLQA 632 (862)
Q Consensus 627 edl~~A 632 (862)
+|+...
T Consensus 379 ~~l~~~ 384 (469)
T PRK10923 379 QDLPGE 384 (469)
T ss_pred HHCcHh
Confidence 887543
No 412
>PLN03073 ABC transporter F family; Provisional
Probab=97.49 E-value=0.00097 Score=81.94 Aligned_cols=46 Identities=17% Similarity=0.168 Sum_probs=38.4
Q ss_pred ccccCccccccc--cc--cccccccCCeEEEECCCCCchhHHHHHHHhhc
Q 002961 408 YLERGVDVKFSD--MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 408 l~~~~~s~~~~~--~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
+.++++++.|++ .+ .++.+..+.+++|+|+||+|||||+++|+|..
T Consensus 178 I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~ 227 (718)
T PLN03073 178 IHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHA 227 (718)
T ss_pred EEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 667888888864 23 27888888899999999999999999999853
No 413
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.49 E-value=8.3e-05 Score=79.72 Aligned_cols=56 Identities=14% Similarity=0.127 Sum_probs=42.8
Q ss_pred ccccCccccccc--cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD--MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~--~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++ .+ .++.+..+..++|.||||+|||||+++|+|...+..|.+.+.
T Consensus 4 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 63 (253)
T TIGR02323 4 LQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYI 63 (253)
T ss_pred EEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe
Confidence 444555555543 12 367788888999999999999999999999988877777653
No 414
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=7.6e-05 Score=78.99 Aligned_cols=41 Identities=24% Similarity=0.239 Sum_probs=35.4
Q ss_pred cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 422 RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 422 ~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
.++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 18 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 58 (232)
T PRK10771 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTL 58 (232)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 36778888999999999999999999999988777776654
No 415
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.49 E-value=8.5e-05 Score=77.59 Aligned_cols=40 Identities=28% Similarity=0.255 Sum_probs=35.4
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 57 (213)
T TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKV 57 (213)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 6778889999999999999999999999998877776654
No 416
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.48 E-value=8.7e-05 Score=77.11 Aligned_cols=41 Identities=24% Similarity=0.166 Sum_probs=35.6
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+...
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 60 (208)
T cd03268 20 SLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFD 60 (208)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEC
Confidence 57778888899999999999999999999888777777653
No 417
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.47 E-value=9.4e-05 Score=76.54 Aligned_cols=40 Identities=30% Similarity=0.214 Sum_probs=35.3
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..++.++|.||||+|||||+++|+|...+..|.+.+
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~ 60 (200)
T PRK13540 21 SFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILF 60 (200)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEE
Confidence 6778888999999999999999999999988877776654
No 418
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.47 E-value=9.8e-05 Score=77.81 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=34.6
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhc-----cCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l-----~~~~~~i~~ 462 (862)
++.+..+..++|.||||+|||||+++|+|.. .+..|.+..
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 64 (227)
T cd03260 20 SLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLL 64 (227)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEE
Confidence 5777888889999999999999999999998 666676654
No 419
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.47 E-value=0.0001 Score=78.81 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=42.0
Q ss_pred ccccCccccccc--cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD--MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~--~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++ .+ .++.+..+..++|+||||+|||||+++|+|...+..|.+...
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 63 (250)
T PRK11264 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVG 63 (250)
T ss_pred EEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEEC
Confidence 344555555543 12 267778888899999999999999999999887777776543
No 420
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.47 E-value=9.7e-05 Score=79.24 Aligned_cols=56 Identities=23% Similarity=0.226 Sum_probs=43.8
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++. + .++.+..+..++|.||||+|||||+++|+|...+..|.+...
T Consensus 6 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 65 (255)
T PRK11300 6 LSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLR 65 (255)
T ss_pred EEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEEC
Confidence 4556666666531 2 367788888899999999999999999999988877777654
No 421
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.47 E-value=9.9e-05 Score=78.57 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=34.8
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (243)
T TIGR02315 22 NLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61 (243)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEE
Confidence 5777888889999999999999999999988777776654
No 422
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.47 E-value=9.2e-05 Score=77.44 Aligned_cols=40 Identities=25% Similarity=0.154 Sum_probs=34.5
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.|+||+|||||+++|+|...+..|.+..
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 64 (218)
T cd03266 25 SFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATV 64 (218)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence 5677788889999999999999999999988777776654
No 423
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.46 E-value=0.00025 Score=83.84 Aligned_cols=55 Identities=24% Similarity=0.191 Sum_probs=42.3
Q ss_pred ccccCccccccc--cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSD--MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~--~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++ .+ .++.+..+..++|+||||+|||||+++|+|...+..|.+.+
T Consensus 5 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~ 63 (501)
T PRK11288 5 LSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILI 63 (501)
T ss_pred EEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 455666666654 12 36777888889999999999999999999988777676643
No 424
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.46 E-value=0.00023 Score=83.81 Aligned_cols=55 Identities=22% Similarity=0.195 Sum_probs=41.9
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|.+.+..|.+..
T Consensus 4 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~ 62 (490)
T PRK10938 4 LQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQS 62 (490)
T ss_pred EEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEE
Confidence 4455666666431 2 26777888889999999999999999999988777776653
No 425
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.45 E-value=0.00011 Score=79.25 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=43.5
Q ss_pred ccccCccccccc--cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD--MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~--~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++ .+ .++.+..+..++|.||||+|||||+++|+|...+..|.+.+.
T Consensus 7 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 66 (258)
T PRK11701 7 LSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYR 66 (258)
T ss_pred EEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEEC
Confidence 455566666643 12 367788889999999999999999999999988777776543
No 426
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=9.9e-05 Score=78.40 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=34.6
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 60 (241)
T cd03256 21 SLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60 (241)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence 5777888889999999999999999999988777676654
No 427
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=0.0001 Score=76.79 Aligned_cols=41 Identities=20% Similarity=0.128 Sum_probs=35.4
Q ss_pred cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 422 RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 422 ~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
.++.+..+..++|.||||+|||||+++|+|...+..|.+.+
T Consensus 17 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~ 57 (211)
T cd03298 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLI 57 (211)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 36778888899999999999999999999998777776654
No 428
>PRK15115 response regulator GlrR; Provisional
Probab=97.45 E-value=0.00046 Score=80.11 Aligned_cols=180 Identities=20% Similarity=0.260 Sum_probs=98.6
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh-----hcccchhhH-------HHHHHHHHhcCCceeEh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV-------RSLYQEAKDNAPSVVFI 494 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~-----~~gq~~~~l-------~~~f~~a~~~~p~iL~i 494 (862)
..++|+|++|+|||+++++|.... +.+++.++|..+... .+|...... ...+ .....+.|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~---~~a~~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLF---QAAEGGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcE---EECCCCEEEE
Confidence 458999999999999999997754 468999998765322 112111000 0011 1223468999
Q ss_pred HHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc-----C----CCcEEEEEecCCCCCCCccccCCCCccc------
Q 002961 495 DELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----G----RGNVITIASTNRPDILDPALVRPGRFDR------ 559 (862)
Q Consensus 495 DEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~-----~----~~~vlvI~tTN~~~~Ld~aLlrpgRfd~------ 559 (862)
||++.+... ....|+..|+.-. . ..++.+|++|+.. ++ .++..|+|..
T Consensus 235 ~~i~~l~~~--------------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~-~~~~~~~f~~~l~~~l 297 (444)
T PRK15115 235 DEIGDMPAP--------------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LP-KAMARGEFREDLYYRL 297 (444)
T ss_pred EccccCCHH--------------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HH-HHHHcCCccHHHHHhh
Confidence 999998654 4555666554321 0 1257888888742 22 2222344421
Q ss_pred -cccCCCCCHHhHH----HHHHHHHccC----C--C--CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCH
Q 002961 560 -KIFIPKPGLIGRM----EILKVHARKK----P--M--ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 626 (862)
Q Consensus 560 -~I~~~~P~~~~R~----~Il~~~l~~~----~--~--~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~ 626 (862)
.+.+..|...+|. .|+.+++... . . ..+..+..|....---+.+++.++++.++.. .....|+.
T Consensus 298 ~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~---~~~~~i~~ 374 (444)
T PRK15115 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL---TSSPVISD 374 (444)
T ss_pred ceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh---CCCCccCh
Confidence 2344445554443 3445554321 1 1 1222344444444223557777887776543 33446887
Q ss_pred HHHHHH
Q 002961 627 DDLLQA 632 (862)
Q Consensus 627 edl~~A 632 (862)
+++...
T Consensus 375 ~~l~~~ 380 (444)
T PRK15115 375 ALVEQA 380 (444)
T ss_pred hhhhhh
Confidence 777543
No 429
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.44 E-value=0.00033 Score=69.84 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=33.5
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
++.+..++.+.|+||+|+|||||+-.+||--.+..+.+.
T Consensus 30 ~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~ 68 (228)
T COG4181 30 ELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVR 68 (228)
T ss_pred eEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEE
Confidence 677889999999999999999999999997666666553
No 430
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.44 E-value=0.00011 Score=76.65 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=35.4
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+...
T Consensus 21 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 61 (214)
T cd03292 21 NISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVN 61 (214)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 57778888899999999999999999999987777776543
No 431
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=9.8e-05 Score=80.17 Aligned_cols=40 Identities=18% Similarity=0.097 Sum_probs=35.1
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+||||+|||||+++|+|.+.+..|.+..
T Consensus 21 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 60 (271)
T PRK13638 21 NLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLW 60 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEE
Confidence 5777888889999999999999999999998887777654
No 432
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.44 E-value=0.00029 Score=83.08 Aligned_cols=40 Identities=30% Similarity=0.168 Sum_probs=34.7
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+.+
T Consensus 18 s~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 57 (491)
T PRK10982 18 NLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILF 57 (491)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEE
Confidence 5677788889999999999999999999988777777654
No 433
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.0002 Score=77.53 Aligned_cols=38 Identities=16% Similarity=0.036 Sum_probs=32.3
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeee
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI 460 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i 460 (862)
++.+..+..+.|+|.+|.|||||+++|-+--.+..|.+
T Consensus 26 sL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v 63 (339)
T COG1135 26 SLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63 (339)
T ss_pred eEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE
Confidence 57788888899999999999999999988666665555
No 434
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.43 E-value=0.00036 Score=83.42 Aligned_cols=56 Identities=21% Similarity=0.167 Sum_probs=45.5
Q ss_pred ccccCccccccc---cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD---MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~---~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++ .+ .++.+.++..++|+||+|+|||||++.|+|...+..|.+...
T Consensus 323 i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~ 383 (547)
T PRK10522 323 LELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLD 383 (547)
T ss_pred EEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 667788887753 22 277888888999999999999999999999988887777543
No 435
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.43 E-value=0.00022 Score=85.63 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=45.9
Q ss_pred ccccCccccccc---cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSD---MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~---~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+..+++++.|++ .+ .++.++++..++|+||+|+||||+++.|.+...+..|.|..
T Consensus 329 I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred EEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 677888888873 22 37888899999999999999999999999998887776654
No 436
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.43 E-value=0.00011 Score=78.22 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=35.8
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+...
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~ 62 (242)
T TIGR03411 22 SLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFG 62 (242)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEC
Confidence 67788888999999999999999999999988777776644
No 437
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.43 E-value=0.00011 Score=78.71 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=36.0
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+...
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (252)
T TIGR03005 20 NFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 67788889999999999999999999999988877777543
No 438
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.42 E-value=0.00012 Score=78.01 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=35.9
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+...
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 62 (242)
T PRK11124 22 TLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62 (242)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 67778888899999999999999999999988777777654
No 439
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.42 E-value=0.00011 Score=78.33 Aligned_cols=41 Identities=22% Similarity=0.133 Sum_probs=35.5
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+...
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 63 (241)
T PRK14250 23 SVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILID 63 (241)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 67778888899999999999999999999988777776543
No 440
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.42 E-value=0.00065 Score=77.18 Aligned_cols=196 Identities=19% Similarity=0.228 Sum_probs=110.2
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHH------HHHH--HHhcCCceeEhH
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRS------LYQE--AKDNAPSVVFID 495 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~------~f~~--a~~~~p~iL~iD 495 (862)
+.+++.-+|+|.|.||+.||-|++.|..-.....+...-+.- -+|-+..-++. +++- +.....+|..||
T Consensus 370 MKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS---GVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCID 446 (721)
T KOG0482|consen 370 MKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS---GVGLTAAVMKDPVTGEMVLEGGALVLADGGICCID 446 (721)
T ss_pred ceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC---ccccchhhhcCCCCCeeEeccceEEEccCceEeeh
Confidence 445666679999999999999999998865443333221110 01111111100 0000 001124588999
Q ss_pred HHHHhhhhccCcCCCCchhHHHHHHHHHHh----hc--cc--cCCCcEEEEEecCCCC-------------CCCccccCC
Q 002961 496 ELDAVGRERGLIKGSGGQERDATLNQLLVC----LD--GF--EGRGNVITIASTNRPD-------------ILDPALVRP 554 (862)
Q Consensus 496 Eid~l~~~~~~~~~Sgge~~r~~l~~LL~~----Ld--~~--~~~~~vlvI~tTN~~~-------------~Ld~aLlrp 554 (862)
|+|++... .|..+...++. |. ++ .-+.+.-|+++.|+.. .||.+|++
T Consensus 447 EfDKM~e~-----------DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLS- 514 (721)
T KOG0482|consen 447 EFDKMDES-----------DRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLS- 514 (721)
T ss_pred hhhhhhhh-----------hhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHH-
Confidence 99998543 12233333321 10 11 1123566777777642 27889999
Q ss_pred CCccccccC-CCCCHHhHHHHHHHHH----ccCCCC---CcccH----------------------HHH----------H
Q 002961 555 GRFDRKIFI-PKPGLIGRMEILKVHA----RKKPMA---DDVDY----------------------LAV----------A 594 (862)
Q Consensus 555 gRfd~~I~~-~~P~~~~R~~Il~~~l----~~~~~~---~~~dl----------------------~~l----------A 594 (862)
|||...-+ ..|+.+.-..+.++.. ....-. ..++. +.+ +
T Consensus 515 -RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea 593 (721)
T KOG0482|consen 515 -RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPVVPEALADYITGAYVELRREA 593 (721)
T ss_pred -hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99976544 3677666555554433 111100 00111 001 0
Q ss_pred --hhc-CCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 002961 595 --SMT-DGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 635 (862)
Q Consensus 595 --~~t-~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 635 (862)
..- .-.|++.|-.+++.+...|..+-...+..+|+.+|+..
T Consensus 594 ~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRL 637 (721)
T KOG0482|consen 594 RSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRL 637 (721)
T ss_pred hccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 001 12478899999999988888888889999999999983
No 441
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.42 E-value=0.00044 Score=71.86 Aligned_cols=116 Identities=20% Similarity=0.244 Sum_probs=64.0
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhc------------cc-------c----hhhH
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYV------------GV-------G----ASRV 477 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~------------gq-------~----~~~l 477 (862)
-|+..+.-+.|+||||+|||+|+..++... +...++++...+....+ +. . ...+
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 356666678999999999999998887543 55677777654211100 00 0 0112
Q ss_pred HHHHHHHHhcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecC
Q 002961 478 RSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTN 542 (862)
Q Consensus 478 ~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN 542 (862)
..+...+....+++++||-+..+..... . +........+..++..|..+....++.++.++.
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~~~~--~-~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYRLEL--S-DDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhHHHh--C-CccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 3333334455788999999988753211 1 111111223333444444444455667776643
No 442
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.41 E-value=0.00018 Score=81.83 Aligned_cols=40 Identities=28% Similarity=0.227 Sum_probs=34.7
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.|+||+|||||+++|+|...+..|.+.+
T Consensus 44 sf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~i 83 (382)
T TIGR03415 44 SLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLV 83 (382)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence 5777888889999999999999999999998777776644
No 443
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.41 E-value=0.00034 Score=71.29 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=39.0
Q ss_pred ccCccccccccc--c--ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeeccc
Q 002961 410 ERGVDVKFSDMY--R--RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 464 (862)
Q Consensus 410 ~~~~s~~~~~~~--~--~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~ 464 (862)
++++++.|+... . ++.+..+.--.|+||||.|||||+-.++.-++...|.+....
T Consensus 4 i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g 62 (252)
T COG4604 4 IENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDG 62 (252)
T ss_pred ehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEee
Confidence 345555555422 2 344455555789999999999999999999888888776543
No 444
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.41 E-value=0.00012 Score=77.68 Aligned_cols=55 Identities=18% Similarity=0.179 Sum_probs=42.1
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|+.. + .++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 6 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 64 (237)
T PRK11614 6 LSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVF 64 (237)
T ss_pred EEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEE
Confidence 3445555555431 1 26788889999999999999999999999998777777654
No 445
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.40 E-value=0.00037 Score=73.48 Aligned_cols=39 Identities=26% Similarity=0.255 Sum_probs=32.7
Q ss_pred ccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 425 GVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 425 ~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
.+..+..++|.|+||+|||||+++|+|...+..|.+...
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 40 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVA 40 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 456778899999999999999999999887777766543
No 446
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.40 E-value=0.00013 Score=77.71 Aligned_cols=40 Identities=30% Similarity=0.330 Sum_probs=33.6
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhc--cCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEA--GVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l--~~~~~~i~~ 462 (862)
++.+..+..++|+||||+|||||+++|+|.. .+..|.+..
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~ 61 (243)
T TIGR01978 20 NLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILF 61 (243)
T ss_pred ceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEE
Confidence 6777888889999999999999999999984 456666654
No 447
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00012 Score=79.32 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=42.9
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|...+..|.+.+
T Consensus 8 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 66 (265)
T PRK10253 8 LRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWL 66 (265)
T ss_pred EEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEE
Confidence 4455666666542 2 26778888899999999999999999999998777777654
No 448
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.40 E-value=0.00011 Score=76.41 Aligned_cols=40 Identities=25% Similarity=0.157 Sum_probs=33.6
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+ .++|.||||+|||||+++|+|...+..|.+...
T Consensus 20 s~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 59 (211)
T cd03264 20 SLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59 (211)
T ss_pred eEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEEC
Confidence 5666777 899999999999999999999888777776543
No 449
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.40 E-value=0.00013 Score=77.47 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=35.7
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|.|+||+|||||+++|+|...+..|.+...
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 61 (240)
T PRK09493 21 DLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVD 61 (240)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 67778888999999999999999999999988777777543
No 450
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.40 E-value=0.00064 Score=77.70 Aligned_cols=166 Identities=23% Similarity=0.229 Sum_probs=95.3
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh-----hcccchhhHHHHHHHHHh--------cCCceeE
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRVRSLYQEAKD--------NAPSVVF 493 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~-----~~gq~~~~l~~~f~~a~~--------~~p~iL~ 493 (862)
..|+|.|.+||||..+|++|-... ..|++.++|+.+... .+|... ..|.-+.. ...+-+|
T Consensus 247 ~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeK----GAFTGA~~~r~GrFElAdGGTLF 322 (550)
T COG3604 247 STVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEK----GAFTGAINTRRGRFELADGGTLF 322 (550)
T ss_pred CeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccc----cccccchhccCcceeecCCCeEe
Confidence 457999999999999999997644 679999999986554 334322 23322221 1234699
Q ss_pred hHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccc-----cCC----CcEEEEEecCCCC-------CCCccccCCCCc
Q 002961 494 IDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF-----EGR----GNVITIASTNRPD-------ILDPALVRPGRF 557 (862)
Q Consensus 494 iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~-----~~~----~~vlvI~tTN~~~-------~Ld~aLlrpgRf 557 (862)
+|||..+.-. ....||..|..- -+. -.|-||++||.-= .+-..|.. |+
T Consensus 323 LDEIGelPL~--------------lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V~~G~FRaDLYy--RL 386 (550)
T COG3604 323 LDEIGELPLA--------------LQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVRDGEFRADLYY--RL 386 (550)
T ss_pred chhhccCCHH--------------HHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHHHcCcchhhhhh--cc
Confidence 9999776433 567777766531 111 2488999999621 11222222 33
Q ss_pred cccccCCCCCHHhHH----HHHHHHHcc----CCC-CCcc---cHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 002961 558 DRKIFIPKPGLIGRM----EILKVHARK----KPM-ADDV---DYLAVASMTDGMVGAELANIVEVAAINM 616 (862)
Q Consensus 558 d~~I~~~~P~~~~R~----~Il~~~l~~----~~~-~~~~---dl~~lA~~t~G~s~adI~~lv~~A~~~A 616 (862)
. ++.+..|...+|. -+..+++.+ ... ...+ .++.+....-=-+-++++++++.|+..|
T Consensus 387 s-V~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 387 S-VFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred c-ccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 3 3444445443332 233333322 122 1112 2333333321125589999999998876
No 451
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.40 E-value=0.00026 Score=74.33 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.2
Q ss_pred CeEEEECCCCCchhHHHHHHHh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAG 451 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~ 451 (862)
+.++|+||||+|||||++.|+.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6789999999999999999984
No 452
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.39 E-value=0.00041 Score=81.32 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=35.9
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+...
T Consensus 44 SfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~ 84 (549)
T PRK13545 44 SFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIK 84 (549)
T ss_pred EEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 67788888899999999999999999999988777777543
No 453
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.39 E-value=0.0003 Score=72.89 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=24.0
Q ss_pred ccccccCC-eEEEECCCCCchhHHHHHHH
Q 002961 423 RRGVRIPG-GILLCGPPGVGKTLLAKAVA 450 (862)
Q Consensus 423 ~l~i~~~~-~vlL~GpnGtGKTtLakaLA 450 (862)
++.+..+. .++|+||||+|||||++.|+
T Consensus 21 ~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 21 DIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 46666664 59999999999999999998
No 454
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.38 E-value=0.00013 Score=77.77 Aligned_cols=41 Identities=22% Similarity=0.152 Sum_probs=35.4
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+...
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 61 (242)
T cd03295 21 NLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFID 61 (242)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 57778888999999999999999999999887777776543
No 455
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.38 E-value=0.00047 Score=75.18 Aligned_cols=39 Identities=21% Similarity=0.098 Sum_probs=33.5
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+|+||+|||||+++|++.+. ..|.+.+
T Consensus 24 sl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i 62 (275)
T cd03289 24 SFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQI 62 (275)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEE
Confidence 67788889999999999999999999999876 5565543
No 456
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.38 E-value=0.00014 Score=76.36 Aligned_cols=40 Identities=28% Similarity=0.185 Sum_probs=35.0
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.||||+|||||+++|+|.+.+..|.+..
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (223)
T TIGR03740 20 SLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIF 59 (223)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 5777888999999999999999999999988777776654
No 457
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.38 E-value=0.00012 Score=70.55 Aligned_cols=41 Identities=29% Similarity=0.302 Sum_probs=35.2
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|+|+||+|||||+++|+|...+..|.+...
T Consensus 5 ~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~ 45 (137)
T PF00005_consen 5 SLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILIN 45 (137)
T ss_dssp EEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEET
T ss_pred EEEEcCCCEEEEEccCCCccccceeeecccccccccccccc
Confidence 46678888999999999999999999999988777777443
No 458
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.38 E-value=0.00016 Score=77.48 Aligned_cols=55 Identities=18% Similarity=0.179 Sum_probs=40.8
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhcc-----Cceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG-----VNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~-----~~~~~i~~ 462 (862)
+.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|... +..|.+..
T Consensus 7 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 70 (253)
T PRK14242 7 MEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILL 70 (253)
T ss_pred EEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEE
Confidence 5566666666532 2 367788888899999999999999999999754 23555543
No 459
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.37 E-value=0.00017 Score=77.59 Aligned_cols=56 Identities=13% Similarity=0.078 Sum_probs=43.3
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++. + .++.+..+..++|+|+||+|||||+++|+|...+..|.+...
T Consensus 6 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 65 (257)
T PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVN 65 (257)
T ss_pred EEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 4555666666431 2 367788888999999999999999999999987777776543
No 460
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.37 E-value=0.00013 Score=78.63 Aligned_cols=40 Identities=25% Similarity=0.355 Sum_probs=34.9
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+|+||+|||||+++|+|...+..|.+..
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~ 61 (258)
T PRK13548 22 SLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL 61 (258)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 6777888889999999999999999999988777776654
No 461
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.37 E-value=0.00018 Score=73.64 Aligned_cols=77 Identities=22% Similarity=0.232 Sum_probs=50.6
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhh-----------hccc-----chhhHHHHHHHHHh
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-----------YVGV-----GASRVRSLYQEAKD 486 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~-----------~~gq-----~~~~l~~~f~~a~~ 486 (862)
.+.++.+..++|+||||+|||||+++|++.+.+..+.+...+.... +..+ .......++..+..
T Consensus 19 ~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR 98 (186)
T cd01130 19 WLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALR 98 (186)
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhc
Confidence 3556777889999999999999999999987654443332221110 0000 11224566666677
Q ss_pred cCCceeEhHHHHH
Q 002961 487 NAPSVVFIDELDA 499 (862)
Q Consensus 487 ~~p~iL~iDEid~ 499 (862)
..|++++++|++.
T Consensus 99 ~~pd~i~igEir~ 111 (186)
T cd01130 99 MRPDRIIVGEVRG 111 (186)
T ss_pred cCCCEEEEEccCc
Confidence 8899999999853
No 462
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.36 E-value=0.00036 Score=82.41 Aligned_cols=53 Identities=26% Similarity=0.249 Sum_probs=38.7
Q ss_pred ccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccC--ceeeeec
Q 002961 410 ERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISA 462 (862)
Q Consensus 410 ~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~--~~~~i~~ 462 (862)
++++++.|++. + .++.+..+..++|+||||+|||||+++|+|...+ ..|.+.+
T Consensus 4 i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~ 62 (500)
T TIGR02633 4 MKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYW 62 (500)
T ss_pred EEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEE
Confidence 34455555431 2 2677788888999999999999999999998764 4666644
No 463
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.35 E-value=8.5e-05 Score=72.26 Aligned_cols=85 Identities=31% Similarity=0.502 Sum_probs=52.4
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccC---ceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhcc
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGV---NFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 505 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~---~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~ 505 (862)
...|+|+|++||||+++|+.|...... ++..+++.... ..+++. ..++.++|+++|.+...
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~---a~~gtL~l~~i~~L~~~-- 84 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQ---AKGGTLYLKNIDRLSPE-- 84 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHH---CTTSEEEEECGCCS-HH--
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHH---cCCCEEEECChHHCCHH--
Confidence 346899999999999999999886543 34444443311 223333 35668999999988654
Q ss_pred CcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecC
Q 002961 506 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTN 542 (862)
Q Consensus 506 ~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN 542 (862)
....|+..+.... ..++-+|++|.
T Consensus 85 ------------~Q~~L~~~l~~~~-~~~~RlI~ss~ 108 (138)
T PF14532_consen 85 ------------AQRRLLDLLKRQE-RSNVRLIASSS 108 (138)
T ss_dssp ------------HHHHHHHHHHHCT-TTTSEEEEEEC
T ss_pred ------------HHHHHHHHHHhcC-CCCeEEEEEeC
Confidence 4555555565433 33445555553
No 464
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.35 E-value=0.00039 Score=69.30 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=44.2
Q ss_pred cccccCcccccccc----ccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeee
Q 002961 407 QYLERGVDVKFSDM----YRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI 460 (862)
Q Consensus 407 ~l~~~~~s~~~~~~----~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i 460 (862)
.+.+.++++.|+.. ..+|.+.+++-+.|+|.+|+|||||+++|++.+.+..+.+
T Consensus 6 LL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v 63 (258)
T COG4107 6 LLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTV 63 (258)
T ss_pred ceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeE
Confidence 36667777777652 2478889999999999999999999999999987776665
No 465
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.35 E-value=0.00039 Score=75.48 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=44.6
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCceeeeecc-----------cchhh--hcccc-----------hhhHHHHHHHHH
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS-----------QFVEI--YVGVG-----------ASRVRSLYQEAK 485 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~-----------~~~~~--~~gq~-----------~~~l~~~f~~a~ 485 (862)
.+++|.||||+|||||+++|++.+.+..+.+... ++... ++.|. ......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 5789999999999999999999887655443221 11100 11111 111234556667
Q ss_pred hcCCceeEhHHH
Q 002961 486 DNAPSVVFIDEL 497 (862)
Q Consensus 486 ~~~p~iL~iDEi 497 (862)
...|.++++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 788999999996
No 466
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=97.35 E-value=0.00046 Score=82.69 Aligned_cols=56 Identities=18% Similarity=0.084 Sum_probs=45.5
Q ss_pred ccccCccccccc-------cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD-------MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~-------~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++ .+ .++.+..+..++|+||+|+|||||++.|++...+..|.+...
T Consensus 338 i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~ 402 (555)
T TIGR01194 338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLD 402 (555)
T ss_pred EEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 667788887753 12 267788888899999999999999999999988888877554
No 467
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00015 Score=77.87 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=40.1
Q ss_pred ccCccccccc--cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 410 ERGVDVKFSD--MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 410 ~~~~s~~~~~--~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++++++.|++ .+ .++.+..+..++|+|+||+|||||+++|+|...+..|.+..
T Consensus 5 ~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (255)
T PRK11231 5 TENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFL 61 (255)
T ss_pred EEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEE
Confidence 3455555543 12 26777888889999999999999999999988777776654
No 468
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.34 E-value=0.00016 Score=76.05 Aligned_cols=55 Identities=13% Similarity=0.056 Sum_probs=41.4
Q ss_pred ccccCccccccc-----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSD-----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~-----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++ .+ .++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 12 l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 73 (226)
T cd03248 12 VKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLL 73 (226)
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEE
Confidence 444555555532 12 26777888889999999999999999999998777776654
No 469
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00015 Score=79.59 Aligned_cols=40 Identities=13% Similarity=0.034 Sum_probs=34.9
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 31 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 70 (289)
T PRK13645 31 SLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIV 70 (289)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 6778888889999999999999999999998777776654
No 470
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.34 E-value=0.00015 Score=78.04 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=35.2
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.|+||+|||||+++|+|...+..|.+..
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 60 (256)
T TIGR03873 21 DVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL 60 (256)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence 6777888999999999999999999999988877776654
No 471
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=97.34 E-value=0.00048 Score=84.13 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=42.8
Q ss_pred ccccCcccccc-c--cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFS-D--MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~-~--~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|+ + .+ .++.+..++.++|+||||+|||||+++|+|...+..|.+..
T Consensus 452 i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~ 511 (659)
T TIGR00954 452 IKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTK 511 (659)
T ss_pred EEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEee
Confidence 66777777763 2 22 27778888899999999999999999999987666565543
No 472
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00016 Score=78.81 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=35.5
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+.+.
T Consensus 27 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~ 67 (280)
T PRK13649 27 NLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVD 67 (280)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 57778888899999999999999999999988877777543
No 473
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.33 E-value=0.00063 Score=78.76 Aligned_cols=183 Identities=21% Similarity=0.200 Sum_probs=96.9
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh-----hcccchhhH----HHHHHHHHhcCCceeEhHH
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV----RSLYQEAKDNAPSVVFIDE 496 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~-----~~gq~~~~l----~~~f~~a~~~~p~iL~iDE 496 (862)
...++|+|.+|+||++++++|.... ..+++.++|+..... .+|...... ...........++.+||||
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~lde 241 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEec
Confidence 3568999999999999999997543 568999998864322 122111100 0000011233467899999
Q ss_pred HHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc----C-----CCcEEEEEecCCCCCCCccccCCCCccc-------c
Q 002961 497 LDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----G-----RGNVITIASTNRPDILDPALVRPGRFDR-------K 560 (862)
Q Consensus 497 id~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~----~-----~~~vlvI~tTN~~~~Ld~aLlrpgRfd~-------~ 560 (862)
|+.+... ....|+..++.-. + ..++.+|++|+..- ..++.+|+|.. .
T Consensus 242 i~~l~~~--------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~ 304 (441)
T PRK10365 242 IGDISPM--------------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL---AAEVNAGRFRQDLYYRLNV 304 (441)
T ss_pred cccCCHH--------------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCchHHHHHHhcc
Confidence 9998654 4556666655321 1 12456777775421 12223344422 2
Q ss_pred ccCCCCCHHh----HHHHHHHHHccC----CC----CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHH
Q 002961 561 IFIPKPGLIG----RMEILKVHARKK----PM----ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDD 628 (862)
Q Consensus 561 I~~~~P~~~~----R~~Il~~~l~~~----~~----~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~ed 628 (862)
+.+..|...+ ...++.+++... .. ..+..+..|....---+.+++.++++.++.. .....|+.++
T Consensus 305 ~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~---~~~~~i~~~~ 381 (441)
T PRK10365 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL---LTGEYISERE 381 (441)
T ss_pred ceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh---CCCCccchHh
Confidence 3444444443 444555555431 11 1222233344333122456677777766543 3344677777
Q ss_pred HHH
Q 002961 629 LLQ 631 (862)
Q Consensus 629 l~~ 631 (862)
+..
T Consensus 382 l~~ 384 (441)
T PRK10365 382 LPL 384 (441)
T ss_pred Cch
Confidence 643
No 474
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.33 E-value=0.00016 Score=76.46 Aligned_cols=40 Identities=23% Similarity=0.254 Sum_probs=34.8
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 61 (234)
T cd03251 22 SLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILI 61 (234)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEE
Confidence 5777888889999999999999999999998777776654
No 475
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.32 E-value=0.00043 Score=82.18 Aligned_cols=55 Identities=22% Similarity=0.205 Sum_probs=43.1
Q ss_pred ccccCccccccc-------cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSD-------MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~-------~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++ .+ .++.+..+..++|.||||+|||||+++|+|...+..|.+.+
T Consensus 280 l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~ 343 (520)
T TIGR03269 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNV 343 (520)
T ss_pred EEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 566677776631 22 36778888889999999999999999999998777777654
No 476
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.31 E-value=0.00018 Score=78.39 Aligned_cols=34 Identities=29% Similarity=0.301 Sum_probs=30.5
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN 456 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~ 456 (862)
++.+..+..++|+||||+|||||+++|+|.+.+.
T Consensus 21 sl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~ 54 (272)
T PRK13547 21 SLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGG 54 (272)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCc
Confidence 5777888889999999999999999999987665
No 477
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.31 E-value=0.00019 Score=76.66 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=34.3
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCc-----eeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN-----FFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~-----~~~i~~ 462 (862)
++.+..+..++|.|+||+|||||+++|+|...+. .|.+..
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~ 65 (247)
T TIGR00972 21 NLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLF 65 (247)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEE
Confidence 6777888889999999999999999999988765 666654
No 478
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.31 E-value=0.00022 Score=77.31 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=40.9
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhcc-----Cceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG-----VNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~-----~~~~~i~~ 462 (862)
+.++++++.|++. + .++.+..+..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 22 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 85 (268)
T PRK14248 22 LEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILY 85 (268)
T ss_pred EEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEE
Confidence 5566677666542 2 267788888999999999999999999999653 34565543
No 479
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.30 E-value=0.00053 Score=76.05 Aligned_cols=77 Identities=23% Similarity=0.324 Sum_probs=51.3
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhh---------hc------ccchhhHHHHHHHHHhc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI---------YV------GVGASRVRSLYQEAKDN 487 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~---------~~------gq~~~~l~~~f~~a~~~ 487 (862)
++.+..+..++|+||+|+|||||+++|++.+......+...+.... +. +...-.+..++..+...
T Consensus 138 ~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~ 217 (308)
T TIGR02788 138 RLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRM 217 (308)
T ss_pred HHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcC
Confidence 3456678899999999999999999999987554333322221110 00 00111246677777788
Q ss_pred CCceeEhHHHHH
Q 002961 488 APSVVFIDELDA 499 (862)
Q Consensus 488 ~p~iL~iDEid~ 499 (862)
.|+++++||+..
T Consensus 218 ~pd~ii~gE~r~ 229 (308)
T TIGR02788 218 RPDRIILGELRG 229 (308)
T ss_pred CCCeEEEeccCC
Confidence 899999999963
No 480
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.30 E-value=0.00061 Score=82.10 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=61.9
Q ss_pred cEEEEEecCCC--CCCCccccCCCCcc---ccccCCC--C-CHHhHHHHHHHHHccCC---CCCcccHH---HHHh---h
Q 002961 534 NVITIASTNRP--DILDPALVRPGRFD---RKIFIPK--P-GLIGRMEILKVHARKKP---MADDVDYL---AVAS---M 596 (862)
Q Consensus 534 ~vlvI~tTN~~--~~Ld~aLlrpgRfd---~~I~~~~--P-~~~~R~~Il~~~l~~~~---~~~~~dl~---~lA~---~ 596 (862)
++.||+++|.. ..++|.|.. ||. ..+.|.. + +.+.+..+++...+... ....++-. .+.. +
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 56788888774 567899988 765 4455542 2 23445555553332211 11223322 2221 2
Q ss_pred cCC------CCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 597 TDG------MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 597 t~G------~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
..| ...++|..+++.|...|...+...++.+|+.+|+.
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKK 398 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHH
Confidence 222 34689999999999999999999999999988875
No 481
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.30 E-value=0.00018 Score=78.84 Aligned_cols=41 Identities=17% Similarity=0.113 Sum_probs=36.2
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+.+.
T Consensus 27 sl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~ 67 (287)
T PRK13641 27 SFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIA 67 (287)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 67788888999999999999999999999988887877653
No 482
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.30 E-value=0.0002 Score=73.36 Aligned_cols=40 Identities=18% Similarity=0.102 Sum_probs=34.6
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 12 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 51 (190)
T TIGR01166 12 NFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLI 51 (190)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEE
Confidence 4667888899999999999999999999988777776654
No 483
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.30 E-value=0.00024 Score=74.98 Aligned_cols=29 Identities=21% Similarity=0.108 Sum_probs=25.0
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHh
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAG 451 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~ 451 (862)
++.+..++.++|+||||+||||+++.+++
T Consensus 25 ~~~~~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 25 HLSAEGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred EEEecCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34556677899999999999999999998
No 484
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.29 E-value=0.00018 Score=76.36 Aligned_cols=41 Identities=15% Similarity=0.083 Sum_probs=35.1
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|+|+||+|||||+++|+|...+..|.+...
T Consensus 23 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 63 (238)
T cd03249 23 SLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLD 63 (238)
T ss_pred EEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEEC
Confidence 57778888999999999999999999999987777766543
No 485
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.29 E-value=0.0004 Score=82.07 Aligned_cols=40 Identities=23% Similarity=0.159 Sum_probs=34.9
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 273 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 312 (501)
T PRK11288 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYL 312 (501)
T ss_pred eEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEE
Confidence 6778888999999999999999999999988776666654
No 486
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.29 E-value=0.00019 Score=75.45 Aligned_cols=40 Identities=25% Similarity=0.235 Sum_probs=34.9
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+|+||+|||||+++|+|...+..|.+.+
T Consensus 28 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 67 (224)
T TIGR02324 28 SLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILV 67 (224)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 5777888889999999999999999999998777776654
No 487
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.29 E-value=0.0002 Score=77.82 Aligned_cols=55 Identities=25% Similarity=0.179 Sum_probs=41.4
Q ss_pred ccccCccccccc---cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSD---MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~---~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++ .+ .++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 7 l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 66 (272)
T PRK15056 7 IVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISI 66 (272)
T ss_pred EEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 344455555531 12 26777888889999999999999999999998877777654
No 488
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.28 E-value=7.8e-05 Score=78.27 Aligned_cols=56 Identities=25% Similarity=0.240 Sum_probs=47.9
Q ss_pred ccccCccccccccc----cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSDMY----RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~~~----~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+..+++++.|+... .++.+..+..+.|+||||+||||+.+.|.|.+.+..|.+...
T Consensus 5 L~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~ 64 (250)
T COG0411 5 LEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFR 64 (250)
T ss_pred eeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEEC
Confidence 55678888888742 488889999999999999999999999999999988887654
No 489
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=97.28 E-value=0.00076 Score=77.64 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=36.9
Q ss_pred cccCccccccccc----cccccccCCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 409 LERGVDVKFSDMY----RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 409 ~~~~~s~~~~~~~----~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
.+.++++.|.+.. ..+.+..++++.|+|+||+||||++++|++...
T Consensus 77 k~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~ 126 (614)
T KOG0927|consen 77 KIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV 126 (614)
T ss_pred eeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC
Confidence 3456666665532 378889999999999999999999999999653
No 490
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.28 E-value=0.0002 Score=75.91 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=34.8
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+.+
T Consensus 21 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~ 60 (236)
T cd03253 21 SFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEE
Confidence 5777888889999999999999999999988777776654
No 491
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.28 E-value=0.00023 Score=75.44 Aligned_cols=40 Identities=28% Similarity=0.257 Sum_probs=35.0
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+.++..++|+|+||+|||||+++|+|...+..|.+..
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~ 59 (232)
T cd03300 20 SLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL 59 (232)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 5677888899999999999999999999998877776654
No 492
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.00025 Score=77.72 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=46.0
Q ss_pred CCCccccccCccccccc--cc--cccccccCCeEEEECCCCCchhHHHHHHHhhcc-----Cceeeeec
Q 002961 403 KGLPQYLERGVDVKFSD--MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG-----VNFFSISA 462 (862)
Q Consensus 403 i~~~~l~~~~~s~~~~~--~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~-----~~~~~i~~ 462 (862)
.+.+.+.++++++.|++ .+ .++.+..+..++|+||||+|||||+++|+|... +..|.+.+
T Consensus 35 ~~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i 103 (285)
T PRK14254 35 SGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTF 103 (285)
T ss_pred CCCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEE
Confidence 34455778888888864 22 377888888899999999999999999999875 34565544
No 493
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.00022 Score=76.44 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=40.1
Q ss_pred ccccCccccccc--cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCc-----eeeeec
Q 002961 408 YLERGVDVKFSD--MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN-----FFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~--~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~-----~~~i~~ 462 (862)
+.++++++.|+. .+ .++.+..+..++|.||||+|||||+++|+|...+. .|.+..
T Consensus 5 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~ 68 (253)
T PRK14267 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRL 68 (253)
T ss_pred EEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEE
Confidence 344455555543 12 26777888889999999999999999999987652 566654
No 494
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.26 E-value=0.00022 Score=77.20 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=35.7
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|.||||+|||||+++|+|...+..|.+.+.
T Consensus 31 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 71 (265)
T TIGR02769 31 SLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFR 71 (265)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 57778888999999999999999999999988877777543
No 495
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.26 E-value=0.00027 Score=76.09 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=37.7
Q ss_pred ccccCccccccc--cc--cccccccCCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 408 YLERGVDVKFSD--MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 408 l~~~~~s~~~~~--~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
+.++++++.|+. .+ .++.+..+..++|.|+||+|||||+++|+|...
T Consensus 13 l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 13 YQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred EEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 566677776653 22 267778888899999999999999999999875
No 496
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.26 E-value=0.00028 Score=76.48 Aligned_cols=55 Identities=16% Similarity=0.188 Sum_probs=42.3
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccC-----ceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-----NFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~-----~~~~i~~ 462 (862)
+.++++++.|++. + .++.+.++..++|.||||+|||||+++|+|...+ ..|.+..
T Consensus 20 l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~ 83 (267)
T PRK14235 20 MRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITL 83 (267)
T ss_pred EEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEE
Confidence 5566777776542 2 3777888889999999999999999999998754 4566643
No 497
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.26 E-value=0.00022 Score=74.75 Aligned_cols=40 Identities=20% Similarity=0.126 Sum_probs=34.7
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 63 (221)
T cd03244 24 SFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILI 63 (221)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEE
Confidence 5777888889999999999999999999988777676654
No 498
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.26 E-value=0.00025 Score=76.43 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=40.6
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhcc-----Cceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG-----VNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~-----~~~~~i~~ 462 (862)
+.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|... +..|.+..
T Consensus 14 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~ 77 (260)
T PRK10744 14 IQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILL 77 (260)
T ss_pred EEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEE
Confidence 4555666666532 2 267788888899999999999999999999865 23565543
No 499
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.25 E-value=0.00025 Score=75.86 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=39.7
Q ss_pred ccccCccccccc--cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccC-----ceeeeec
Q 002961 408 YLERGVDVKFSD--MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-----NFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~--~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~-----~~~~i~~ 462 (862)
+.++++++.|++ .+ .++.+..+..++|.||||+|||||+++|+|...+ ..|.+..
T Consensus 4 l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i 67 (250)
T PRK14262 4 IEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYF 67 (250)
T ss_pred EEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEE
Confidence 344555555543 12 2677888889999999999999999999997653 4565543
No 500
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.25 E-value=0.00026 Score=76.89 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=42.3
Q ss_pred ccccCccccccc--cc--cccccccCCeEEEECCCCCchhHHHHHHHhhcc-----Cceeeeec
Q 002961 408 YLERGVDVKFSD--MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG-----VNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~--~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~-----~~~~~i~~ 462 (862)
+.++++++.|++ .+ .++.+..+..++|+|+||+|||||+++|+|.+. +..|.+.+
T Consensus 25 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~ 88 (271)
T PRK14238 25 FDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILY 88 (271)
T ss_pred EEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEE
Confidence 566777777654 22 367788888999999999999999999999875 35565544
Done!