Query 002961
Match_columns 862
No_of_seqs 526 out of 4777
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 08:09:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002961.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002961hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 1.5E-62 5E-67 565.4 38.0 399 421-824 41-458 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 8.2E-60 2.8E-64 545.5 36.5 399 421-826 56-470 (499)
3 4b4t_J 26S protease regulatory 100.0 1.3E-37 4.4E-42 348.4 19.4 218 420-637 173-390 (405)
4 2di4_A Zinc protease, cell div 100.0 7.4E-38 2.5E-42 326.8 16.1 179 645-827 10-204 (238)
5 4b4t_I 26S protease regulatory 100.0 1.3E-36 4.6E-41 341.0 20.8 219 420-638 207-425 (437)
6 4b4t_M 26S protease regulatory 100.0 2.6E-36 9E-41 342.4 20.7 217 420-636 206-422 (434)
7 4b4t_L 26S protease subunit RP 100.0 3.9E-36 1.3E-40 341.3 20.5 218 420-637 206-423 (437)
8 4b4t_H 26S protease regulatory 100.0 3.5E-36 1.2E-40 340.7 19.3 219 420-638 234-452 (467)
9 4b4t_K 26S protease regulatory 100.0 1.4E-35 4.7E-40 336.3 20.2 218 420-637 197-415 (428)
10 3cf2_A TER ATPase, transitiona 100.0 4.1E-32 1.4E-36 327.9 6.2 202 418-619 500-701 (806)
11 3cf2_A TER ATPase, transitiona 100.0 1.3E-29 4.5E-34 306.1 16.2 216 417-635 226-458 (806)
12 1lv7_A FTSH; alpha/beta domain 100.0 5.9E-27 2E-31 248.5 24.9 216 422-637 38-253 (257)
13 3cf0_A Transitional endoplasmi 99.9 2.1E-27 7.2E-32 258.7 17.5 215 420-634 40-279 (301)
14 2x8a_A Nuclear valosin-contain 99.9 4.8E-27 1.6E-31 252.9 17.1 211 422-635 37-263 (274)
15 3h4m_A Proteasome-activating n 99.9 3.5E-26 1.2E-30 245.7 20.4 217 421-637 43-259 (285)
16 1ixz_A ATP-dependent metallopr 99.9 4.2E-26 1.5E-30 241.5 20.3 212 422-633 42-253 (254)
17 1iy2_A ATP-dependent metallopr 99.9 4.4E-25 1.5E-29 237.3 20.6 212 422-633 66-277 (278)
18 2qz4_A Paraplegin; AAA+, SPG7, 99.9 2.3E-25 8E-30 235.7 14.3 217 422-638 32-251 (262)
19 1xwi_A SKD1 protein; VPS4B, AA 99.9 1.3E-24 4.3E-29 239.3 20.3 189 426-619 42-233 (322)
20 3hu3_A Transitional endoplasmi 99.9 1.9E-24 6.7E-29 250.2 20.4 209 423-634 232-457 (489)
21 3eie_A Vacuolar protein sortin 99.9 7.5E-25 2.6E-29 240.7 15.9 190 425-619 47-238 (322)
22 2qp9_X Vacuolar protein sortin 99.9 5E-24 1.7E-28 237.6 18.5 190 425-619 80-271 (355)
23 2r62_A Cell division protease 99.9 1.3E-25 4.4E-30 239.4 2.9 214 421-634 36-251 (268)
24 2zan_A Vacuolar protein sortin 99.9 2.8E-23 9.7E-28 238.2 17.2 189 426-619 164-355 (444)
25 1ypw_A Transitional endoplasmi 99.9 8.4E-25 2.9E-29 267.6 4.3 201 420-620 502-702 (806)
26 3t15_A Ribulose bisphosphate c 99.9 5.5E-24 1.9E-28 231.1 5.9 227 424-666 31-281 (293)
27 3b9p_A CG5977-PA, isoform A; A 99.9 3.7E-22 1.3E-26 215.8 15.2 203 427-634 52-270 (297)
28 3d8b_A Fidgetin-like protein 1 99.9 1.8E-21 6.2E-26 217.0 21.2 206 427-637 115-335 (357)
29 3vfd_A Spastin; ATPase, microt 99.9 2.6E-21 9E-26 218.0 17.8 204 427-635 146-364 (389)
30 1ypw_A Transitional endoplasmi 99.8 6.4E-20 2.2E-24 224.5 18.6 214 419-635 228-458 (806)
31 3m6a_A ATP-dependent protease 99.6 4.3E-18 1.5E-22 199.8 -3.4 194 428-635 107-340 (543)
32 2c9o_A RUVB-like 1; hexameric 99.6 2.5E-18 8.5E-23 197.8 -8.5 178 424-611 58-262 (456)
33 3uk6_A RUVB-like 2; hexameric 99.6 2.5E-15 8.4E-20 166.9 14.4 190 427-635 68-329 (368)
34 3syl_A Protein CBBX; photosynt 99.6 9.1E-16 3.1E-20 166.2 10.4 192 428-631 66-281 (309)
35 3pfi_A Holliday junction ATP-d 99.6 1.4E-14 4.7E-19 159.2 17.0 183 428-635 54-253 (338)
36 1qvr_A CLPB protein; coiled co 99.6 6.3E-15 2.2E-19 181.9 14.5 350 230-615 378-818 (854)
37 1ofh_A ATP-dependent HSL prote 99.6 8.6E-15 2.9E-19 158.0 12.4 203 428-634 49-297 (310)
38 1d2n_A N-ethylmaleimide-sensit 99.5 1.9E-14 6.6E-19 153.5 12.9 191 426-634 61-262 (272)
39 1hqc_A RUVB; extended AAA-ATPa 99.5 5.6E-14 1.9E-18 153.0 15.1 182 428-635 37-237 (324)
40 2z4s_A Chromosomal replication 99.5 2.6E-14 8.9E-19 163.6 12.9 190 429-634 130-330 (440)
41 2v1u_A Cell division control p 99.5 2.2E-13 7.4E-18 151.1 15.8 198 427-636 42-276 (387)
42 3bos_A Putative DNA replicatio 99.5 1.8E-13 6.2E-18 141.4 13.8 181 428-634 51-241 (242)
43 3hws_A ATP-dependent CLP prote 99.5 8.8E-14 3E-18 154.9 12.2 190 428-619 50-325 (363)
44 2r44_A Uncharacterized protein 99.5 2.9E-13 9.9E-18 148.4 15.0 191 429-637 46-298 (331)
45 1l8q_A Chromosomal replication 99.5 9.8E-14 3.3E-18 151.8 10.5 170 428-615 36-214 (324)
46 3pxi_A Negative regulator of g 99.5 1.7E-13 5.8E-18 167.1 13.2 163 431-613 523-721 (758)
47 1g41_A Heat shock protein HSLU 99.4 4.2E-14 1.4E-18 160.8 5.7 138 428-577 49-190 (444)
48 2chg_A Replication factor C sm 99.4 8.6E-13 3E-17 133.8 14.4 174 430-634 39-224 (226)
49 1g8p_A Magnesium-chelatase 38 99.4 5.2E-13 1.8E-17 146.8 13.4 133 488-637 144-323 (350)
50 1in4_A RUVB, holliday junction 99.4 2.6E-12 9E-17 141.6 18.4 184 428-636 50-250 (334)
51 3pvs_A Replication-associated 99.4 2.6E-13 8.8E-18 155.5 10.2 176 430-634 51-242 (447)
52 4fcw_A Chaperone protein CLPB; 99.4 2.2E-13 7.5E-18 147.4 8.3 171 430-616 48-278 (311)
53 2qby_A CDC6 homolog 1, cell di 99.4 2.7E-12 9.3E-17 142.0 16.8 196 427-636 43-272 (386)
54 2qby_B CDC6 homolog 3, cell di 99.4 1.8E-12 6.3E-17 144.1 15.0 188 427-636 43-270 (384)
55 1njg_A DNA polymerase III subu 99.4 1.7E-12 5.9E-17 133.0 13.4 181 429-633 45-248 (250)
56 1fnn_A CDC6P, cell division co 99.4 4.8E-12 1.6E-16 140.7 16.2 189 431-636 46-274 (389)
57 3te6_A Regulatory protein SIR3 99.3 6.8E-13 2.3E-17 145.0 7.4 138 427-581 43-213 (318)
58 1um8_A ATP-dependent CLP prote 99.3 2.8E-12 9.5E-17 143.4 12.5 204 428-633 71-362 (376)
59 1r6b_X CLPA protein; AAA+, N-t 99.3 4.3E-12 1.5E-16 154.7 14.4 199 426-636 204-433 (758)
60 1sxj_D Activator 1 41 kDa subu 99.3 9.6E-12 3.3E-16 136.7 14.5 179 430-634 59-261 (353)
61 3u61_B DNA polymerase accessor 99.3 4E-12 1.4E-16 138.8 10.2 175 427-634 46-235 (324)
62 3f9v_A Minichromosome maintena 99.3 1.8E-12 6.2E-17 153.5 7.9 190 426-636 324-587 (595)
63 3pxg_A Negative regulator of g 99.3 7E-12 2.4E-16 144.6 11.6 180 427-634 199-404 (468)
64 1r6b_X CLPA protein; AAA+, N-t 99.3 3.7E-12 1.3E-16 155.2 8.9 168 430-613 489-712 (758)
65 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 2.9E-12 9.8E-17 148.5 6.5 187 427-630 39-280 (500)
66 1jbk_A CLPB protein; beta barr 99.2 8.3E-13 2.8E-17 130.8 0.7 136 427-575 41-194 (195)
67 2chq_A Replication factor C sm 99.2 3.7E-11 1.3E-15 129.8 12.7 172 431-633 40-223 (319)
68 1qvr_A CLPB protein; coiled co 99.2 2E-11 6.9E-16 150.7 10.9 180 427-619 189-395 (854)
69 3pxi_A Negative regulator of g 99.2 2.8E-11 9.6E-16 147.5 10.9 165 427-619 199-388 (758)
70 1sxj_B Activator 1 37 kDa subu 99.2 8.1E-11 2.8E-15 127.3 13.1 173 431-634 44-229 (323)
71 1jr3_A DNA polymerase III subu 99.2 9.8E-11 3.4E-15 129.6 13.9 181 429-633 38-241 (373)
72 1sxj_A Activator 1 95 kDa subu 99.2 4.4E-11 1.5E-15 139.5 10.8 183 428-634 76-272 (516)
73 1iqp_A RFCS; clamp loader, ext 99.1 2.1E-10 7.3E-15 124.2 12.6 172 431-633 48-231 (327)
74 2p65_A Hypothetical protein PF 99.1 2.3E-11 7.9E-16 120.2 3.3 129 427-567 41-187 (187)
75 1sxj_C Activator 1 40 kDa subu 99.1 9.3E-11 3.2E-15 129.2 8.3 177 432-634 49-237 (340)
76 3k1j_A LON protease, ATP-depen 99.0 2.9E-10 9.8E-15 135.1 9.6 132 487-634 200-373 (604)
77 1sxj_E Activator 1 40 kDa subu 99.0 5.5E-10 1.9E-14 123.0 11.0 162 432-613 39-241 (354)
78 2bjv_A PSP operon transcriptio 99.0 5.8E-10 2E-14 118.2 9.9 180 428-629 28-250 (265)
79 1a5t_A Delta prime, HOLB; zinc 99.0 1.2E-09 4.1E-14 120.3 12.4 162 427-612 22-208 (334)
80 1ojl_A Transcriptional regulat 99.0 2.5E-10 8.5E-15 124.2 6.7 181 428-630 24-246 (304)
81 3kw6_A 26S protease regulatory 99.0 1.4E-09 4.7E-14 94.2 9.5 74 564-637 1-74 (78)
82 1w5s_A Origin recognition comp 99.0 3.7E-09 1.3E-13 118.4 14.2 197 428-635 49-292 (412)
83 2krk_A 26S protease regulatory 98.9 2.5E-09 8.6E-14 94.5 8.4 77 561-637 6-82 (86)
84 2gno_A DNA polymerase III, gam 98.8 8.3E-09 2.8E-13 112.3 10.2 125 429-579 18-152 (305)
85 3vlf_B 26S protease regulatory 98.8 1.9E-08 6.4E-13 89.2 9.1 73 567-639 2-74 (88)
86 3n70_A Transport activator; si 98.7 1.8E-08 6.1E-13 97.2 6.5 91 428-544 23-116 (145)
87 3co5_A Putative two-component 98.7 5.2E-09 1.8E-13 100.8 2.3 91 428-544 26-116 (143)
88 3aji_B S6C, proteasome (prosom 98.6 6.4E-08 2.2E-12 84.6 7.2 71 567-637 2-72 (83)
89 4akg_A Glutathione S-transfera 98.6 8E-08 2.7E-12 129.0 9.9 144 423-581 1261-1433(2695)
90 2kjq_A DNAA-related protein; s 98.5 3E-08 1E-12 96.5 3.8 58 428-500 35-95 (149)
91 3ec2_A DNA replication protein 98.4 5.8E-08 2E-12 96.6 3.1 75 423-499 32-111 (180)
92 2dzn_B 26S protease regulatory 98.4 8.4E-08 2.9E-12 83.8 3.7 69 569-637 1-69 (82)
93 3f8t_A Predicted ATPase involv 98.4 7.3E-07 2.5E-11 101.3 10.2 187 429-636 239-483 (506)
94 2vhj_A Ntpase P4, P4; non- hyd 98.3 4E-07 1.4E-11 99.1 5.1 122 425-551 119-242 (331)
95 3cmw_A Protein RECA, recombina 98.3 7.9E-07 2.7E-11 114.9 8.5 118 426-544 1079-1218(1706)
96 4g1u_C Hemin import ATP-bindin 98.2 7.5E-07 2.6E-11 95.0 5.8 56 407-462 11-70 (266)
97 3gfo_A Cobalt import ATP-bindi 98.2 1.2E-06 3.9E-11 94.0 6.7 55 408-462 8-67 (275)
98 1svm_A Large T antigen; AAA+ f 98.2 6.2E-07 2.1E-11 100.2 3.0 121 423-565 163-284 (377)
99 3fvq_A Fe(3+) IONS import ATP- 98.1 5.7E-07 1.9E-11 99.7 2.5 55 408-462 5-63 (359)
100 3rlf_A Maltose/maltodextrin im 98.1 5.4E-07 1.8E-11 100.6 2.0 56 408-463 4-63 (381)
101 3tui_C Methionine import ATP-b 98.1 2.4E-06 8.1E-11 94.9 6.9 56 407-462 24-87 (366)
102 3tif_A Uncharacterized ABC tra 98.1 2.2E-06 7.4E-11 89.7 6.0 41 423-463 25-65 (235)
103 1z47_A CYSA, putative ABC-tran 98.1 1.1E-06 3.6E-11 97.5 3.6 56 408-463 15-75 (355)
104 2fna_A Conserved hypothetical 98.1 2E-05 7E-10 85.6 13.7 164 430-610 31-251 (357)
105 2onk_A Molybdate/tungstate ABC 98.1 4.3E-06 1.5E-10 87.7 7.9 52 410-462 4-57 (240)
106 1vpl_A ABC transporter, ATP-bi 98.1 5E-06 1.7E-10 88.1 8.3 55 408-462 16-74 (256)
107 2it1_A 362AA long hypothetical 98.1 3.5E-06 1.2E-10 93.6 7.2 55 408-462 4-62 (362)
108 2yyz_A Sugar ABC transporter, 98.1 3.2E-06 1.1E-10 93.8 6.7 55 408-462 4-62 (359)
109 2ihy_A ABC transporter, ATP-bi 98.1 3.6E-06 1.2E-10 90.3 6.5 56 408-463 22-81 (279)
110 1sgw_A Putative ABC transporte 98.1 1E-05 3.4E-10 83.5 9.6 56 408-463 11-69 (214)
111 2pcj_A ABC transporter, lipopr 98.0 5.4E-06 1.9E-10 86.0 7.2 55 408-462 5-63 (224)
112 2w58_A DNAI, primosome compone 98.0 1.1E-06 3.7E-11 88.8 1.6 69 430-500 55-127 (202)
113 2olj_A Amino acid ABC transpor 98.0 3.5E-06 1.2E-10 89.7 5.2 55 408-462 25-83 (263)
114 2nq2_C Hypothetical ABC transp 98.0 3.5E-06 1.2E-10 89.1 5.1 54 408-461 5-63 (253)
115 1ny5_A Transcriptional regulat 98.0 6.6E-06 2.2E-10 92.3 7.5 179 431-632 162-383 (387)
116 1v43_A Sugar-binding transport 98.0 2.1E-06 7.2E-11 95.8 3.4 56 408-463 12-71 (372)
117 2yz2_A Putative ABC transporte 98.0 9.1E-06 3.1E-10 86.5 7.9 41 423-463 27-67 (266)
118 2pjz_A Hypothetical protein ST 98.0 1.7E-05 5.8E-10 84.3 9.4 39 423-463 25-63 (263)
119 2r2a_A Uncharacterized protein 97.9 3.2E-06 1.1E-10 86.2 3.1 128 430-569 6-156 (199)
120 2ff7_A Alpha-hemolysin translo 97.9 1.2E-05 4E-10 84.7 7.5 54 409-462 9-68 (247)
121 2ixe_A Antigen peptide transpo 97.9 1.1E-05 3.7E-10 86.2 7.4 56 408-463 17-79 (271)
122 2qen_A Walker-type ATPase; unk 97.9 9.6E-05 3.3E-09 80.1 15.1 166 430-610 32-247 (350)
123 1ye8_A Protein THEP1, hypothet 97.9 1.6E-05 5.6E-10 79.4 8.1 26 431-456 2-27 (178)
124 2ehv_A Hypothetical protein PH 97.9 5.4E-05 1.8E-09 78.3 12.3 26 425-450 26-51 (251)
125 3d31_A Sulfate/molybdate ABC t 97.9 2.1E-05 7.3E-10 86.9 9.6 54 410-463 4-60 (348)
126 3nh6_A ATP-binding cassette SU 97.9 8.8E-06 3E-10 88.4 6.4 56 408-463 54-114 (306)
127 1g29_1 MALK, maltose transport 97.9 2.4E-06 8.1E-11 95.4 1.8 55 408-462 4-62 (372)
128 1oxx_K GLCV, glucose, ABC tran 97.9 1.8E-06 6.3E-11 95.7 0.7 55 408-462 4-64 (353)
129 2c9o_A RUVB-like 1; hexameric 97.9 1.8E-05 6.2E-10 90.6 8.1 127 489-635 296-436 (456)
130 2pze_A Cystic fibrosis transme 97.8 2.3E-05 7.9E-10 81.5 7.5 56 408-463 7-68 (229)
131 3gd7_A Fusion complex of cysti 97.8 2.6E-05 8.9E-10 87.5 8.0 54 408-462 20-79 (390)
132 2qi9_C Vitamin B12 import ATP- 97.8 1.1E-05 3.8E-10 85.0 4.7 40 423-463 20-59 (249)
133 2eyu_A Twitching motility prot 97.8 9.3E-06 3.2E-10 86.2 4.1 76 423-498 19-108 (261)
134 1yqt_A RNAse L inhibitor; ATP- 97.8 1.1E-05 3.7E-10 94.4 4.8 56 407-462 287-345 (538)
135 3cmu_A Protein RECA, recombina 97.8 2.9E-05 1E-09 101.6 8.9 118 424-541 1422-1561(2050)
136 3ozx_A RNAse L inhibitor; ATP 97.8 1.7E-05 6E-10 92.6 6.1 56 408-463 270-328 (538)
137 4akg_A Glutathione S-transfera 97.8 3.8E-05 1.3E-09 103.6 9.6 130 427-577 643-791 (2695)
138 3dzd_A Transcriptional regulat 97.7 4E-05 1.4E-09 85.4 8.1 165 430-614 153-359 (368)
139 1ji0_A ABC transporter; ATP bi 97.7 1.5E-05 5.2E-10 83.5 4.3 56 408-463 7-66 (240)
140 2ghi_A Transport protein; mult 97.7 4.6E-05 1.6E-09 80.8 7.9 54 408-462 18-78 (260)
141 2w0m_A SSO2452; RECA, SSPF, un 97.7 4.7E-05 1.6E-09 77.6 7.7 29 425-453 19-47 (235)
142 3bk7_A ABC transporter ATP-bin 97.7 1.7E-05 5.7E-10 94.1 4.9 56 407-462 357-415 (607)
143 1g6h_A High-affinity branched- 97.7 1.8E-05 6.1E-10 83.8 4.4 56 408-463 8-67 (257)
144 2bbs_A Cystic fibrosis transme 97.7 4.1E-05 1.4E-09 82.5 7.2 41 423-463 58-98 (290)
145 4gp7_A Metallophosphoesterase; 97.7 1E-05 3.5E-10 80.0 2.1 26 423-448 3-28 (171)
146 1b0u_A Histidine permease; ABC 97.7 2E-05 6.8E-10 83.7 4.4 56 408-463 7-66 (262)
147 4a74_A DNA repair and recombin 97.7 3.6E-05 1.2E-09 78.6 5.8 30 424-453 20-49 (231)
148 2qgz_A Helicase loader, putati 97.7 5.1E-06 1.7E-10 90.4 -0.7 70 429-500 152-226 (308)
149 1jr3_D DNA polymerase III, del 97.7 8.2E-05 2.8E-09 81.5 8.8 177 427-635 16-208 (343)
150 2pt7_A CAG-ALFA; ATPase, prote 97.7 2.4E-05 8.1E-10 85.9 4.4 77 423-499 165-251 (330)
151 3qf4_B Uncharacterized ABC tra 97.6 5.5E-05 1.9E-09 89.6 7.5 56 408-463 355-415 (598)
152 3b5x_A Lipid A export ATP-bind 97.6 9E-05 3.1E-09 87.5 8.9 55 408-462 342-402 (582)
153 2yl4_A ATP-binding cassette SU 97.6 6.5E-05 2.2E-09 88.9 7.4 56 408-463 342-404 (595)
154 2cbz_A Multidrug resistance-as 97.6 3.2E-05 1.1E-09 80.8 3.8 56 408-463 4-65 (237)
155 1mv5_A LMRA, multidrug resista 97.5 3.3E-05 1.1E-09 81.0 3.5 40 423-462 22-61 (243)
156 3b60_A Lipid A export ATP-bind 97.5 9.4E-05 3.2E-09 87.3 7.5 56 408-463 342-403 (582)
157 4a82_A Cystic fibrosis transme 97.5 6.7E-05 2.3E-09 88.5 5.9 56 408-463 340-401 (578)
158 3qf4_A ABC transporter, ATP-bi 97.5 5.3E-05 1.8E-09 89.6 5.0 56 408-463 342-403 (587)
159 1tue_A Replication protein E1; 97.5 4.4E-05 1.5E-09 77.8 3.7 27 430-456 59-85 (212)
160 2d2e_A SUFC protein; ABC-ATPas 97.5 4.3E-05 1.5E-09 80.5 3.7 55 408-462 4-64 (250)
161 2zu0_C Probable ATP-dependent 97.5 4.5E-05 1.6E-09 81.2 3.9 57 407-463 20-82 (267)
162 2cvh_A DNA repair and recombin 97.5 0.0001 3.5E-09 74.7 5.7 39 425-463 16-54 (220)
163 3jvv_A Twitching mobility prot 97.4 0.00013 4.5E-09 80.8 6.5 76 423-498 117-206 (356)
164 4f4c_A Multidrug resistance pr 97.4 0.00021 7.3E-09 91.9 8.9 56 408-463 416-478 (1321)
165 1n0w_A DNA repair protein RAD5 97.4 0.00012 4.2E-09 75.3 5.4 29 424-452 19-47 (243)
166 3vkg_A Dynein heavy chain, cyt 97.4 0.00025 8.7E-09 96.4 9.8 143 424-580 1299-1470(3245)
167 3hr8_A Protein RECA; alpha and 97.4 0.00025 8.6E-09 78.5 7.8 117 424-541 56-195 (356)
168 1htw_A HI0065; nucleotide-bind 97.3 8.9E-05 3E-09 72.6 3.2 40 423-463 27-66 (158)
169 1yqt_A RNAse L inhibitor; ATP- 97.3 0.00022 7.7E-09 83.3 7.1 49 411-459 25-77 (538)
170 2zr9_A Protein RECA, recombina 97.3 0.00018 6.2E-09 79.5 5.8 79 424-502 56-153 (349)
171 3bk7_A ABC transporter ATP-bin 97.2 0.00036 1.2E-08 82.6 7.7 49 411-459 95-147 (607)
172 3j16_B RLI1P; ribosome recycli 97.2 0.00061 2.1E-08 80.6 9.5 36 425-460 99-134 (608)
173 3g5u_A MCG1178, multidrug resi 97.2 0.00018 6.2E-09 92.3 5.0 56 408-463 388-450 (1284)
174 2ewv_A Twitching motility prot 97.2 0.00012 4E-09 81.7 2.3 77 422-498 129-219 (372)
175 1zp6_A Hypothetical protein AT 97.1 0.00026 8.8E-09 70.3 4.0 37 426-462 6-42 (191)
176 2iw3_A Elongation factor 3A; a 97.1 0.0003 1E-08 86.9 5.4 43 409-451 437-483 (986)
177 1pzn_A RAD51, DNA repair and r 97.1 0.00048 1.6E-08 76.1 6.6 31 423-453 125-155 (349)
178 3g5u_A MCG1178, multidrug resi 97.1 0.00034 1.1E-08 89.9 5.9 56 408-463 1031-1093(1284)
179 3ozx_A RNAse L inhibitor; ATP 97.1 0.00052 1.8E-08 80.2 6.8 32 429-460 25-56 (538)
180 3vkg_A Dynein heavy chain, cyt 97.1 0.00089 3.1E-08 91.2 9.7 129 427-576 602-750 (3245)
181 3vaa_A Shikimate kinase, SK; s 97.0 0.00032 1.1E-08 70.6 3.8 37 423-459 19-55 (199)
182 4f4c_A Multidrug resistance pr 97.0 0.00026 8.9E-09 91.1 3.6 56 408-463 1077-1139(1321)
183 3lda_A DNA repair protein RAD5 97.0 0.00064 2.2E-08 76.5 5.9 119 424-543 173-327 (400)
184 1xp8_A RECA protein, recombina 96.9 0.0013 4.4E-08 73.1 8.1 118 424-541 69-208 (366)
185 1nlf_A Regulatory protein REPA 96.9 0.00052 1.8E-08 73.0 4.3 29 425-453 26-54 (279)
186 1kag_A SKI, shikimate kinase I 96.9 0.00052 1.8E-08 66.9 4.0 30 429-458 4-33 (173)
187 2z43_A DNA repair and recombin 96.9 0.0014 4.8E-08 71.4 7.8 116 424-541 102-255 (324)
188 3thx_B DNA mismatch repair pro 96.9 0.00074 2.5E-08 83.3 6.2 29 423-451 667-695 (918)
189 1u94_A RECA protein, recombina 96.9 0.0013 4.3E-08 73.0 7.2 79 424-502 58-155 (356)
190 1v5w_A DMC1, meiotic recombina 96.8 0.0014 4.7E-08 72.2 6.7 117 424-542 117-272 (343)
191 3tr0_A Guanylate kinase, GMP k 96.8 0.00062 2.1E-08 68.2 3.6 29 426-454 4-32 (205)
192 2oap_1 GSPE-2, type II secreti 96.8 0.00049 1.7E-08 79.9 2.9 76 423-498 254-343 (511)
193 1qhx_A CPT, protein (chloramph 96.7 0.00089 3E-08 65.5 4.3 35 429-463 3-37 (178)
194 3j16_B RLI1P; ribosome recycli 96.7 0.001 3.5E-08 78.7 5.5 30 430-459 379-408 (608)
195 3b85_A Phosphate starvation-in 96.7 0.00035 1.2E-08 71.5 1.1 34 426-460 19-52 (208)
196 3thx_A DNA mismatch repair pro 96.7 0.0017 5.9E-08 80.3 7.2 28 423-450 656-683 (934)
197 1z6g_A Guanylate kinase; struc 96.7 0.00072 2.4E-08 69.4 3.3 31 423-453 17-47 (218)
198 3c8u_A Fructokinase; YP_612366 96.7 0.001 3.5E-08 67.4 4.4 37 427-463 20-59 (208)
199 3nwj_A ATSK2; P loop, shikimat 96.7 0.00066 2.3E-08 71.5 2.9 52 408-459 18-78 (250)
200 4eun_A Thermoresistant glucoki 96.7 0.001 3.5E-08 66.9 4.2 30 427-456 27-56 (200)
201 2iw3_A Elongation factor 3A; a 96.7 0.00059 2E-08 84.3 2.8 57 407-463 671-733 (986)
202 2dr3_A UPF0273 protein PH0284; 96.6 0.0065 2.2E-07 62.3 10.2 38 424-461 18-58 (247)
203 3a00_A Guanylate kinase, GMP k 96.6 0.001 3.5E-08 66.2 3.7 28 430-457 2-29 (186)
204 3io5_A Recombination and repai 96.6 0.0018 6.2E-08 70.3 5.9 116 425-541 25-169 (333)
205 3asz_A Uridine kinase; cytidin 96.6 0.0011 3.9E-08 66.8 4.1 34 428-461 5-38 (211)
206 1znw_A Guanylate kinase, GMP k 96.6 0.00095 3.2E-08 67.6 3.5 31 424-454 15-45 (207)
207 2jeo_A Uridine-cytidine kinase 96.6 0.00096 3.3E-08 69.5 3.3 34 423-456 19-52 (245)
208 2gza_A Type IV secretion syste 96.6 0.00075 2.6E-08 74.8 2.6 42 422-463 168-209 (361)
209 2bbw_A Adenylate kinase 4, AK4 96.5 0.0013 4.4E-08 68.5 4.1 28 428-455 26-53 (246)
210 2obl_A ESCN; ATPase, hydrolase 96.5 0.0018 6E-08 71.5 5.1 56 406-461 44-103 (347)
211 1s96_A Guanylate kinase, GMP k 96.5 0.0014 4.9E-08 67.4 4.1 30 426-455 13-42 (219)
212 3trf_A Shikimate kinase, SK; a 96.5 0.0013 4.6E-08 64.7 3.7 31 429-459 5-35 (185)
213 2o8b_B DNA mismatch repair pro 96.5 0.0038 1.3E-07 78.1 8.5 23 429-452 789-811 (1022)
214 2j41_A Guanylate kinase; GMP, 96.5 0.0015 5.3E-08 65.3 4.2 32 426-457 3-34 (207)
215 2rhm_A Putative kinase; P-loop 96.5 0.0015 5E-08 64.7 3.9 33 427-459 3-35 (193)
216 1knq_A Gluconate kinase; ALFA/ 96.5 0.0016 5.5E-08 63.7 4.0 29 429-457 8-36 (175)
217 1y63_A LMAJ004144AAA protein; 96.5 0.0015 5.1E-08 64.9 3.7 34 426-459 7-41 (184)
218 3lnc_A Guanylate kinase, GMP k 96.4 0.0011 3.9E-08 68.1 2.9 32 423-454 21-53 (231)
219 1lvg_A Guanylate kinase, GMP k 96.4 0.0017 5.6E-08 65.6 4.0 27 428-454 3-29 (198)
220 1tf7_A KAIC; homohexamer, hexa 96.4 0.0037 1.3E-07 72.7 7.3 117 423-548 32-189 (525)
221 3kb2_A SPBC2 prophage-derived 96.4 0.0017 6E-08 62.7 3.8 30 431-460 3-32 (173)
222 3b9q_A Chloroplast SRP recepto 96.4 0.0012 4E-08 71.5 2.7 38 424-461 95-132 (302)
223 2v9p_A Replication protein E1; 96.4 0.0014 4.9E-08 70.9 3.3 46 408-453 102-150 (305)
224 1sq5_A Pantothenate kinase; P- 96.4 0.00071 2.4E-08 73.3 0.7 35 427-461 78-114 (308)
225 1wb9_A DNA mismatch repair pro 96.4 0.0031 1.1E-07 76.9 6.4 26 427-452 605-630 (800)
226 1p9r_A General secretion pathw 96.3 0.002 6.8E-08 72.8 4.1 90 408-497 144-245 (418)
227 3t61_A Gluconokinase; PSI-biol 96.3 0.0023 7.8E-08 64.2 4.1 30 429-458 18-47 (202)
228 2dpy_A FLII, flagellum-specifi 96.3 0.0031 1.1E-07 71.7 5.7 55 408-462 132-190 (438)
229 1g41_A Heat shock protein HSLU 96.3 0.0083 2.8E-07 68.2 9.1 139 490-634 252-431 (444)
230 2zts_A Putative uncharacterize 96.3 0.0084 2.9E-07 61.5 8.5 39 424-462 25-67 (251)
231 3iij_A Coilin-interacting nucl 96.3 0.0023 7.7E-08 63.0 3.8 33 427-459 9-41 (180)
232 3cmu_A Protein RECA, recombina 96.3 0.0049 1.7E-07 81.1 7.8 119 425-543 728-868 (2050)
233 1via_A Shikimate kinase; struc 96.2 0.0024 8.2E-08 62.6 3.8 29 431-459 6-34 (175)
234 2i3b_A HCR-ntpase, human cance 96.2 0.0015 5.2E-08 65.7 2.3 24 430-453 2-25 (189)
235 1cke_A CK, MSSA, protein (cyti 96.2 0.0027 9.1E-08 64.7 4.2 28 430-457 6-33 (227)
236 3cm0_A Adenylate kinase; ATP-b 96.2 0.0022 7.7E-08 63.1 3.4 29 429-457 4-32 (186)
237 1ewq_A DNA mismatch repair pro 96.2 0.036 1.2E-06 67.2 14.5 30 423-453 571-600 (765)
238 1kgd_A CASK, peripheral plasma 96.2 0.0025 8.4E-08 63.1 3.6 26 429-454 5-30 (180)
239 1vma_A Cell division protein F 96.2 0.005 1.7E-07 66.7 6.3 28 426-453 101-128 (306)
240 2if2_A Dephospho-COA kinase; a 96.2 0.0022 7.4E-08 64.4 3.2 28 431-459 3-30 (204)
241 2iyv_A Shikimate kinase, SK; t 96.2 0.0025 8.4E-08 62.9 3.5 30 430-459 3-32 (184)
242 1tf7_A KAIC; homohexamer, hexa 96.2 0.016 5.6E-07 67.3 11.0 112 423-544 275-417 (525)
243 3uie_A Adenylyl-sulfate kinase 96.2 0.0027 9.3E-08 63.8 3.8 29 426-454 22-50 (200)
244 2i1q_A DNA repair and recombin 96.2 0.0042 1.4E-07 67.3 5.6 29 424-452 93-121 (322)
245 2og2_A Putative signal recogni 96.2 0.0019 6.4E-08 71.6 2.8 37 424-460 152-188 (359)
246 3sop_A Neuronal-specific septi 96.1 0.0021 7.1E-08 68.4 2.9 31 431-461 4-34 (270)
247 2ze6_A Isopentenyl transferase 96.1 0.0029 9.8E-08 66.5 3.9 31 431-461 3-33 (253)
248 3lw7_A Adenylate kinase relate 96.1 0.0027 9.1E-08 61.2 3.2 28 431-459 3-30 (179)
249 3tau_A Guanylate kinase, GMP k 96.1 0.0034 1.2E-07 63.6 4.2 28 428-455 7-34 (208)
250 1lw7_A Transcriptional regulat 96.1 0.0022 7.5E-08 71.0 2.8 35 423-457 162-198 (365)
251 2c95_A Adenylate kinase 1; tra 96.1 0.0029 1E-07 62.6 3.4 32 428-459 8-39 (196)
252 2r6a_A DNAB helicase, replicat 96.0 0.0063 2.2E-07 69.4 6.5 39 424-462 198-240 (454)
253 1tev_A UMP-CMP kinase; ploop, 96.0 0.0031 1.1E-07 62.2 3.4 29 429-457 3-31 (196)
254 2npi_A Protein CLP1; CLP1-PCF1 96.0 0.0017 5.8E-08 74.4 1.6 48 409-458 120-167 (460)
255 3euj_A Chromosome partition pr 96.0 0.0025 8.6E-08 73.1 3.1 40 423-463 24-63 (483)
256 2p5t_B PEZT; postsegregational 96.0 0.0034 1.2E-07 65.7 3.8 38 427-464 30-67 (253)
257 1jjv_A Dephospho-COA kinase; P 96.0 0.0035 1.2E-07 63.0 3.7 27 431-458 4-30 (206)
258 1z6t_A APAF-1, apoptotic prote 96.0 0.019 6.4E-07 67.2 10.5 149 429-607 147-326 (591)
259 2pez_A Bifunctional 3'-phospho 96.0 0.0044 1.5E-07 60.9 4.3 34 428-461 4-40 (179)
260 1aky_A Adenylate kinase; ATP:A 96.0 0.0039 1.3E-07 63.5 4.0 32 428-459 3-34 (220)
261 2cdn_A Adenylate kinase; phosp 96.0 0.0042 1.4E-07 62.3 4.1 32 428-459 19-50 (201)
262 1ly1_A Polynucleotide kinase; 96.0 0.0035 1.2E-07 61.1 3.4 26 430-455 3-29 (181)
263 2yhs_A FTSY, cell division pro 95.9 0.0027 9.4E-08 72.9 2.8 39 423-461 287-325 (503)
264 1pui_A ENGB, probable GTP-bind 95.9 0.0019 6.5E-08 64.7 1.3 45 409-453 5-50 (210)
265 1zuh_A Shikimate kinase; alpha 95.9 0.004 1.4E-07 60.4 3.6 30 430-459 8-37 (168)
266 4e22_A Cytidylate kinase; P-lo 95.9 0.0045 1.5E-07 64.9 4.2 30 428-457 26-55 (252)
267 1zd8_A GTP:AMP phosphotransfer 95.9 0.0037 1.3E-07 64.0 3.5 32 428-459 6-37 (227)
268 2bwj_A Adenylate kinase 5; pho 95.9 0.0031 1.1E-07 62.6 2.8 32 427-458 10-41 (199)
269 2r8r_A Sensor protein; KDPD, P 95.9 0.059 2E-06 55.6 12.4 23 431-453 8-30 (228)
270 1kht_A Adenylate kinase; phosp 95.9 0.0043 1.5E-07 61.0 3.8 25 430-454 4-28 (192)
271 2vli_A Antibiotic resistance p 95.9 0.004 1.4E-07 61.0 3.5 30 429-458 5-34 (183)
272 2ius_A DNA translocase FTSK; n 95.9 0.011 3.8E-07 68.3 7.6 75 489-576 297-374 (512)
273 3aez_A Pantothenate kinase; tr 95.9 0.0035 1.2E-07 68.1 3.2 30 426-455 87-116 (312)
274 3dl0_A Adenylate kinase; phosp 95.9 0.0044 1.5E-07 62.7 3.8 29 431-459 2-30 (216)
275 1gvn_B Zeta; postsegregational 95.9 0.0043 1.5E-07 66.5 3.9 35 428-462 32-66 (287)
276 3fb4_A Adenylate kinase; psych 95.9 0.0041 1.4E-07 62.9 3.5 29 431-459 2-30 (216)
277 1qf9_A UMP/CMP kinase, protein 95.9 0.0045 1.5E-07 60.9 3.7 30 429-458 6-35 (194)
278 1rj9_A FTSY, signal recognitio 95.8 0.0038 1.3E-07 67.6 3.3 34 428-461 101-134 (304)
279 2bdt_A BH3686; alpha-beta prot 95.8 0.0033 1.1E-07 62.2 2.7 24 431-454 4-27 (189)
280 2px0_A Flagellar biosynthesis 95.8 0.013 4.4E-07 63.1 7.3 27 428-454 104-130 (296)
281 1e6c_A Shikimate kinase; phosp 95.8 0.0052 1.8E-07 59.6 3.8 29 431-459 4-32 (173)
282 2b8t_A Thymidine kinase; deoxy 95.8 0.015 5.3E-07 60.0 7.4 70 431-500 14-101 (223)
283 3tlx_A Adenylate kinase 2; str 95.7 0.0049 1.7E-07 64.2 3.5 33 427-459 27-59 (243)
284 2pt5_A Shikimate kinase, SK; a 95.7 0.0057 1.9E-07 59.1 3.5 29 431-459 2-30 (168)
285 1zak_A Adenylate kinase; ATP:A 95.7 0.0044 1.5E-07 63.2 2.9 30 428-457 4-33 (222)
286 2qt1_A Nicotinamide riboside k 95.7 0.0054 1.9E-07 61.7 3.5 27 427-453 19-45 (207)
287 2orw_A Thymidine kinase; TMTK, 95.7 0.0062 2.1E-07 60.8 3.8 23 430-452 4-26 (184)
288 2iut_A DNA translocase FTSK; n 95.7 0.022 7.6E-07 66.4 9.0 73 490-575 345-419 (574)
289 3ux8_A Excinuclease ABC, A sub 95.7 0.0054 1.8E-07 73.5 4.0 28 423-450 342-369 (670)
290 2v54_A DTMP kinase, thymidylat 95.6 0.0082 2.8E-07 59.8 4.7 32 429-460 4-36 (204)
291 1ukz_A Uridylate kinase; trans 95.6 0.0062 2.1E-07 60.9 3.8 31 429-459 15-45 (203)
292 2jaq_A Deoxyguanosine kinase; 95.6 0.006 2.1E-07 60.6 3.6 28 431-458 2-29 (205)
293 3e1s_A Exodeoxyribonuclease V, 95.6 0.0067 2.3E-07 71.4 4.5 25 429-453 204-228 (574)
294 3be4_A Adenylate kinase; malar 95.6 0.0066 2.3E-07 61.8 3.9 31 429-459 5-35 (217)
295 1cr0_A DNA primase/helicase; R 95.6 0.0056 1.9E-07 65.4 3.4 31 424-454 30-60 (296)
296 3kta_A Chromosome segregation 95.6 0.0061 2.1E-07 59.8 3.4 25 431-455 28-52 (182)
297 3umf_A Adenylate kinase; rossm 95.6 0.0073 2.5E-07 62.1 4.0 39 426-466 26-64 (217)
298 1tq4_A IIGP1, interferon-induc 95.5 0.0036 1.2E-07 70.6 1.7 31 431-461 71-101 (413)
299 3gmt_A Adenylate kinase; ssgci 95.5 0.01 3.6E-07 61.5 5.0 29 430-458 9-37 (230)
300 2qag_B Septin-6, protein NEDD5 95.5 0.0056 1.9E-07 69.2 3.1 30 423-452 34-65 (427)
301 3e70_C DPA, signal recognition 95.5 0.0047 1.6E-07 67.6 2.5 34 427-460 127-160 (328)
302 1u0j_A DNA replication protein 95.5 0.0089 3E-07 63.3 4.5 32 430-462 105-136 (267)
303 1ak2_A Adenylate kinase isoenz 95.5 0.0078 2.7E-07 62.0 4.0 31 429-459 16-46 (233)
304 1g5t_A COB(I)alamin adenosyltr 95.5 0.033 1.1E-06 56.2 8.3 108 430-553 29-169 (196)
305 2qor_A Guanylate kinase; phosp 95.4 0.0078 2.7E-07 60.6 3.5 29 426-454 9-37 (204)
306 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.0095 3.2E-07 62.6 4.2 33 429-461 4-39 (260)
307 3sr0_A Adenylate kinase; phosp 95.4 0.0088 3E-07 60.9 3.9 34 431-466 2-35 (206)
308 1e4v_A Adenylate kinase; trans 95.4 0.0077 2.6E-07 61.0 3.4 29 431-459 2-30 (214)
309 2pbr_A DTMP kinase, thymidylat 95.4 0.01 3.4E-07 58.5 4.1 30 431-460 2-34 (195)
310 2wwf_A Thymidilate kinase, put 95.4 0.0062 2.1E-07 61.1 2.6 29 428-456 9-37 (212)
311 1nks_A Adenylate kinase; therm 95.3 0.0064 2.2E-07 59.7 2.6 24 431-454 3-26 (194)
312 3ney_A 55 kDa erythrocyte memb 95.3 0.011 3.8E-07 59.8 4.3 28 427-454 17-44 (197)
313 2qm8_A GTPase/ATPase; G protei 95.3 0.0069 2.3E-07 66.4 2.9 31 424-454 50-80 (337)
314 1rz3_A Hypothetical protein rb 95.3 0.013 4.3E-07 59.0 4.6 27 427-453 20-46 (201)
315 3sfz_A APAF-1, apoptotic pepti 95.3 0.06 2.1E-06 68.1 11.8 148 429-606 147-325 (1249)
316 2z0h_A DTMP kinase, thymidylat 95.2 0.011 3.7E-07 58.5 3.9 29 432-460 3-34 (197)
317 1q3t_A Cytidylate kinase; nucl 95.2 0.011 3.9E-07 60.8 4.3 32 427-458 14-45 (236)
318 3upu_A ATP-dependent DNA helic 95.2 0.016 5.5E-07 66.1 5.8 23 431-453 47-69 (459)
319 3r20_A Cytidylate kinase; stru 95.2 0.011 3.9E-07 61.3 4.1 29 429-457 9-37 (233)
320 3bh0_A DNAB-like replicative h 95.2 0.025 8.6E-07 61.2 7.1 39 424-462 63-104 (315)
321 2q6t_A DNAB replication FORK h 95.2 0.018 6.2E-07 65.4 6.2 39 424-462 195-237 (444)
322 3dm5_A SRP54, signal recogniti 95.2 0.024 8.2E-07 64.4 6.9 70 428-497 99-191 (443)
323 3cmw_A Protein RECA, recombina 95.2 0.015 5E-07 75.8 5.8 116 425-541 1427-1565(1706)
324 3ake_A Cytidylate kinase; CMP 95.2 0.011 3.6E-07 59.1 3.6 29 431-459 4-32 (208)
325 3kl4_A SRP54, signal recogniti 95.1 0.016 5.6E-07 65.6 5.4 26 428-453 96-121 (433)
326 2plr_A DTMP kinase, probable t 95.1 0.0097 3.3E-07 59.5 3.2 27 429-455 4-30 (213)
327 1u0l_A Probable GTPase ENGC; p 95.1 0.0081 2.8E-07 64.7 2.7 36 427-462 167-202 (301)
328 2xb4_A Adenylate kinase; ATP-b 95.1 0.012 3.9E-07 60.4 3.8 27 431-457 2-28 (223)
329 1nn5_A Similar to deoxythymidy 95.1 0.0079 2.7E-07 60.4 2.4 28 428-455 8-35 (215)
330 2rcn_A Probable GTPase ENGC; Y 95.1 0.01 3.5E-07 65.6 3.5 35 428-462 214-249 (358)
331 1vht_A Dephospho-COA kinase; s 95.1 0.013 4.6E-07 59.3 4.1 30 429-459 4-33 (218)
332 1qhl_A Protein (cell division 95.0 0.0013 4.5E-08 68.2 -3.6 31 430-460 28-58 (227)
333 2f1r_A Molybdopterin-guanine d 95.0 0.0064 2.2E-07 60.1 1.5 34 430-463 3-39 (171)
334 2yvu_A Probable adenylyl-sulfa 95.0 0.013 4.4E-07 57.9 3.5 28 427-454 11-38 (186)
335 1uf9_A TT1252 protein; P-loop, 94.9 0.015 5E-07 57.9 3.9 29 429-458 8-36 (203)
336 1t9h_A YLOQ, probable GTPase E 94.9 0.0051 1.7E-07 66.6 0.5 36 426-461 170-205 (307)
337 3crm_A TRNA delta(2)-isopenten 94.9 0.014 4.7E-07 63.7 3.8 32 430-461 6-37 (323)
338 1uj2_A Uridine-cytidine kinase 94.7 0.021 7.3E-07 59.4 4.7 29 428-456 21-49 (252)
339 2grj_A Dephospho-COA kinase; T 94.7 0.015 5.1E-07 58.5 3.2 29 431-459 14-42 (192)
340 3tqc_A Pantothenate kinase; bi 94.7 0.023 7.8E-07 61.9 4.8 26 429-454 92-117 (321)
341 1m7g_A Adenylylsulfate kinase; 94.6 0.013 4.4E-07 59.3 2.6 29 426-454 22-50 (211)
342 2a5y_B CED-4; apoptosis; HET: 94.6 0.063 2.1E-06 62.6 8.6 23 429-451 152-174 (549)
343 2f9l_A RAB11B, member RAS onco 94.5 0.017 5.8E-07 57.4 3.1 23 431-453 7-29 (199)
344 2yv5_A YJEQ protein; hydrolase 94.5 0.015 5.1E-07 62.7 2.9 34 428-462 164-197 (302)
345 2fz4_A DNA repair protein RAD2 94.5 0.055 1.9E-06 55.9 7.0 32 430-461 109-140 (237)
346 2vp4_A Deoxynucleoside kinase; 94.5 0.014 4.7E-07 60.1 2.3 26 427-452 18-43 (230)
347 2ga8_A Hypothetical 39.9 kDa p 94.4 0.0095 3.2E-07 65.6 1.1 29 431-459 26-54 (359)
348 1ex7_A Guanylate kinase; subst 94.4 0.024 8.2E-07 56.8 3.9 23 432-454 4-26 (186)
349 1oix_A RAS-related protein RAB 94.4 0.017 6E-07 57.1 2.9 24 430-453 30-53 (191)
350 2h92_A Cytidylate kinase; ross 94.2 0.03 1E-06 56.6 4.1 30 430-459 4-33 (219)
351 3a8t_A Adenylate isopentenyltr 94.1 0.027 9.1E-07 61.7 3.8 32 430-461 41-72 (339)
352 1nij_A Hypothetical protein YJ 94.1 0.019 6.4E-07 62.3 2.6 23 431-453 6-28 (318)
353 4aby_A DNA repair protein RECN 94.1 0.0097 3.3E-07 66.6 0.3 32 423-455 55-86 (415)
354 1f2t_A RAD50 ABC-ATPase; DNA d 94.1 0.025 8.5E-07 54.4 3.1 23 431-453 25-47 (149)
355 2qag_C Septin-7; cell cycle, c 94.0 0.027 9.4E-07 63.5 3.8 23 432-454 34-56 (418)
356 1j8m_F SRP54, signal recogniti 94.0 0.08 2.7E-06 56.9 7.2 25 429-453 98-122 (297)
357 1gtv_A TMK, thymidylate kinase 94.0 0.013 4.3E-07 58.9 0.8 25 431-455 2-26 (214)
358 4eaq_A DTMP kinase, thymidylat 93.9 0.03 1E-06 57.7 3.5 28 428-455 25-52 (229)
359 3szr_A Interferon-induced GTP- 93.9 0.022 7.6E-07 67.4 2.8 30 432-461 48-78 (608)
360 3d3q_A TRNA delta(2)-isopenten 93.8 0.03 1E-06 61.4 3.6 28 431-458 9-36 (340)
361 3qf7_A RAD50; ABC-ATPase, ATPa 93.8 0.028 9.6E-07 62.2 3.3 23 431-453 25-47 (365)
362 2f6r_A COA synthase, bifunctio 93.8 0.032 1.1E-06 59.4 3.6 29 429-458 75-103 (281)
363 3zvl_A Bifunctional polynucleo 93.8 0.038 1.3E-06 62.2 4.5 32 426-457 255-286 (416)
364 3foz_A TRNA delta(2)-isopenten 93.8 0.035 1.2E-06 60.1 3.9 33 429-461 10-42 (316)
365 3ux8_A Excinuclease ABC, A sub 93.8 0.025 8.6E-07 67.7 3.1 24 423-446 38-61 (670)
366 1ltq_A Polynucleotide kinase; 93.7 0.028 9.6E-07 59.8 2.9 24 430-453 3-26 (301)
367 2v3c_C SRP54, signal recogniti 93.6 0.08 2.8E-06 59.9 6.7 35 428-462 98-135 (432)
368 1odf_A YGR205W, hypothetical 3 93.6 0.032 1.1E-06 59.8 3.2 28 428-455 30-57 (290)
369 3cr8_A Sulfate adenylyltranfer 93.5 0.021 7.3E-07 66.7 1.8 32 425-456 365-396 (552)
370 2wji_A Ferrous iron transport 93.5 0.036 1.2E-06 53.3 3.0 23 430-452 4-26 (165)
371 3bgw_A DNAB-like replicative h 93.5 0.079 2.7E-06 60.2 6.3 38 425-462 193-233 (444)
372 2gj8_A MNME, tRNA modification 93.4 0.033 1.1E-06 54.1 2.8 24 429-452 4-27 (172)
373 1w1w_A Structural maintenance 93.4 0.04 1.4E-06 62.1 3.8 33 424-456 21-53 (430)
374 2xau_A PRE-mRNA-splicing facto 93.4 0.064 2.2E-06 65.3 5.7 25 428-452 108-132 (773)
375 2qmh_A HPR kinase/phosphorylas 93.4 0.048 1.6E-06 55.3 3.8 27 428-454 33-59 (205)
376 3exa_A TRNA delta(2)-isopenten 93.3 0.049 1.7E-06 59.0 4.1 29 431-459 5-33 (322)
377 1np6_A Molybdopterin-guanine d 93.3 0.044 1.5E-06 54.2 3.5 25 429-453 6-30 (174)
378 2p67_A LAO/AO transport system 93.3 0.11 3.8E-06 56.7 6.9 28 426-453 53-80 (341)
379 1zu4_A FTSY; GTPase, signal re 93.2 0.042 1.5E-06 59.7 3.5 31 424-454 100-130 (320)
380 2zej_A Dardarin, leucine-rich 93.2 0.038 1.3E-06 54.1 2.9 22 431-452 4-25 (184)
381 2o5v_A DNA replication and rep 93.1 0.04 1.4E-06 61.0 3.0 23 431-453 28-50 (359)
382 2wjg_A FEOB, ferrous iron tran 93.1 0.046 1.6E-06 53.2 3.1 23 430-452 8-30 (188)
383 1ni3_A YCHF GTPase, YCHF GTP-b 93.0 0.064 2.2E-06 60.0 4.5 26 427-452 18-43 (392)
384 1q57_A DNA primase/helicase; d 92.8 0.073 2.5E-06 61.3 4.9 39 425-463 238-280 (503)
385 1a7j_A Phosphoribulokinase; tr 92.8 0.054 1.9E-06 58.0 3.5 35 430-464 6-43 (290)
386 3qks_A DNA double-strand break 92.8 0.052 1.8E-06 54.9 3.1 24 431-454 25-48 (203)
387 1sky_E F1-ATPase, F1-ATP synth 92.7 0.062 2.1E-06 61.3 3.9 27 427-453 149-175 (473)
388 2qnr_A Septin-2, protein NEDD5 92.7 0.041 1.4E-06 59.2 2.3 22 431-452 20-41 (301)
389 2j37_W Signal recognition part 92.5 0.14 4.8E-06 59.0 6.6 35 428-462 100-137 (504)
390 1e69_A Chromosome segregation 92.4 0.06 2E-06 58.3 3.2 23 431-453 26-48 (322)
391 1z2a_A RAS-related protein RAB 92.4 0.067 2.3E-06 50.6 3.1 23 430-452 6-28 (168)
392 2dyk_A GTP-binding protein; GT 92.3 0.069 2.4E-06 50.2 3.2 22 431-452 3-24 (161)
393 1udx_A The GTP-binding protein 92.3 0.059 2E-06 60.7 3.1 30 423-452 151-180 (416)
394 3fdi_A Uncharacterized protein 92.3 0.074 2.5E-06 53.7 3.5 29 431-459 8-36 (201)
395 1ls1_A Signal recognition part 92.2 0.042 1.5E-06 58.9 1.6 27 428-454 97-123 (295)
396 1kao_A RAP2A; GTP-binding prot 92.1 0.076 2.6E-06 50.0 3.2 23 430-452 4-26 (167)
397 2nzj_A GTP-binding protein REM 92.1 0.072 2.5E-06 50.8 3.1 23 430-452 5-27 (175)
398 2ged_A SR-beta, signal recogni 92.0 0.086 2.9E-06 51.5 3.6 26 428-453 47-72 (193)
399 2erx_A GTP-binding protein DI- 92.0 0.08 2.7E-06 50.2 3.2 22 431-452 5-26 (172)
400 1u8z_A RAS-related protein RAL 92.0 0.08 2.7E-06 49.9 3.1 23 430-452 5-27 (168)
401 3qkt_A DNA double-strand break 91.9 0.071 2.4E-06 58.2 3.1 23 431-453 25-47 (339)
402 2ce2_X GTPase HRAS; signaling 91.9 0.074 2.5E-06 49.9 2.8 22 431-452 5-26 (166)
403 1z0j_A RAB-22, RAS-related pro 91.9 0.082 2.8E-06 50.1 3.2 24 430-453 7-30 (170)
404 3eph_A TRNA isopentenyltransfe 91.9 0.077 2.6E-06 59.4 3.3 29 431-459 4-32 (409)
405 2www_A Methylmalonic aciduria 91.9 0.076 2.6E-06 58.3 3.3 25 429-453 74-98 (349)
406 3q72_A GTP-binding protein RAD 91.9 0.064 2.2E-06 50.8 2.3 22 431-452 4-25 (166)
407 1ek0_A Protein (GTP-binding pr 91.8 0.084 2.9E-06 49.9 3.1 22 431-452 5-26 (170)
408 2lkc_A Translation initiation 91.8 0.097 3.3E-06 50.2 3.6 25 428-452 7-31 (178)
409 1xjc_A MOBB protein homolog; s 91.8 0.091 3.1E-06 51.8 3.4 32 430-461 5-39 (169)
410 3q85_A GTP-binding protein REM 91.8 0.082 2.8E-06 50.2 3.0 22 431-452 4-25 (169)
411 3lxx_A GTPase IMAP family memb 91.8 0.082 2.8E-06 54.2 3.2 24 430-453 30-53 (239)
412 1c9k_A COBU, adenosylcobinamid 91.7 0.11 3.8E-06 51.7 3.9 32 432-464 2-33 (180)
413 1wms_A RAB-9, RAB9, RAS-relate 91.7 0.088 3E-06 50.4 3.2 23 430-452 8-30 (177)
414 1z08_A RAS-related protein RAB 91.7 0.089 3E-06 49.9 3.2 23 430-452 7-29 (170)
415 1g16_A RAS-related protein SEC 91.7 0.081 2.8E-06 50.1 2.8 22 431-452 5-26 (170)
416 3p32_A Probable GTPase RV1496/ 91.6 0.19 6.6E-06 55.1 6.2 24 430-453 80-103 (355)
417 1c1y_A RAS-related protein RAP 91.6 0.093 3.2E-06 49.5 3.1 22 431-452 5-26 (167)
418 3tw8_B RAS-related protein RAB 91.6 0.08 2.7E-06 50.7 2.7 23 430-452 10-32 (181)
419 1ky3_A GTP-binding protein YPT 91.5 0.094 3.2E-06 50.3 3.2 23 430-452 9-31 (182)
420 3lv8_A DTMP kinase, thymidylat 91.5 0.09 3.1E-06 54.6 3.1 29 426-454 24-52 (236)
421 3k53_A Ferrous iron transport 91.5 0.081 2.8E-06 55.6 2.8 24 430-453 4-27 (271)
422 1upt_A ARL1, ADP-ribosylation 91.5 0.1 3.5E-06 49.6 3.3 24 429-452 7-30 (171)
423 1r2q_A RAS-related protein RAB 91.4 0.098 3.4E-06 49.4 3.1 23 430-452 7-29 (170)
424 1nrj_B SR-beta, signal recogni 91.4 0.11 3.7E-06 52.0 3.5 25 429-453 12-36 (218)
425 1r8s_A ADP-ribosylation factor 91.3 0.1 3.5E-06 49.2 3.1 22 431-452 2-23 (164)
426 2hxs_A RAB-26, RAS-related pro 91.3 0.11 3.8E-06 49.7 3.4 23 430-452 7-29 (178)
427 3bc1_A RAS-related protein RAB 91.3 0.1 3.5E-06 50.6 3.1 23 430-452 12-34 (195)
428 4dsu_A GTPase KRAS, isoform 2B 91.2 0.1 3.6E-06 50.4 3.2 23 430-452 5-27 (189)
429 2xxa_A Signal recognition part 91.2 0.24 8.1E-06 56.1 6.5 37 427-463 98-138 (433)
430 2fn4_A P23, RAS-related protei 91.2 0.099 3.4E-06 50.1 2.9 23 430-452 10-32 (181)
431 3clv_A RAB5 protein, putative; 91.1 0.11 3.7E-06 50.7 3.2 24 429-452 7-30 (208)
432 1svi_A GTP-binding protein YSX 91.1 0.11 3.9E-06 50.7 3.3 25 428-452 22-46 (195)
433 1ega_A Protein (GTP-binding pr 91.1 0.089 3.1E-06 56.5 2.8 23 430-452 9-31 (301)
434 3ice_A Transcription terminati 91.1 0.17 5.7E-06 56.4 4.9 30 424-453 169-198 (422)
435 2oil_A CATX-8, RAS-related pro 91.0 0.11 3.8E-06 50.8 3.1 23 430-452 26-48 (193)
436 1z0f_A RAB14, member RAS oncog 91.0 0.11 3.9E-06 49.6 3.1 23 430-452 16-38 (179)
437 2y8e_A RAB-protein 6, GH09086P 90.9 0.11 3.6E-06 49.8 2.8 23 430-452 15-37 (179)
438 3con_A GTPase NRAS; structural 90.9 0.12 4E-06 50.4 3.1 23 430-452 22-44 (190)
439 3tqf_A HPR(Ser) kinase; transf 90.9 0.11 3.6E-06 51.6 2.7 25 428-452 15-39 (181)
440 1xx6_A Thymidine kinase; NESG, 90.8 0.16 5.6E-06 50.9 4.2 24 430-453 9-32 (191)
441 2ocp_A DGK, deoxyguanosine kin 90.8 0.11 3.7E-06 53.5 3.0 26 429-454 2-27 (241)
442 2gxq_A Heat resistant RNA depe 90.8 0.64 2.2E-05 45.9 8.6 17 429-445 38-54 (207)
443 2cxx_A Probable GTP-binding pr 90.8 0.1 3.4E-06 50.7 2.5 22 431-452 3-24 (190)
444 2e87_A Hypothetical protein PH 90.8 3.2 0.00011 45.3 14.9 25 429-453 167-191 (357)
445 1p5z_B DCK, deoxycytidine kina 90.8 0.077 2.6E-06 55.5 1.8 27 428-454 23-49 (263)
446 2ohf_A Protein OLA1, GTP-bindi 90.8 0.17 5.8E-06 56.5 4.7 26 427-452 20-45 (396)
447 3t1o_A Gliding protein MGLA; G 90.7 0.12 4.3E-06 50.1 3.2 24 430-453 15-38 (198)
448 2a9k_A RAS-related protein RAL 90.7 0.12 4.2E-06 49.7 3.1 23 430-452 19-41 (187)
449 2efe_B Small GTP-binding prote 90.7 0.13 4.3E-06 49.5 3.2 23 430-452 13-35 (181)
450 1x6v_B Bifunctional 3'-phospho 90.7 0.14 4.8E-06 60.6 4.0 33 429-461 52-87 (630)
451 3pqc_A Probable GTP-binding pr 90.6 0.11 3.7E-06 50.5 2.6 24 430-453 24-47 (195)
452 2g6b_A RAS-related protein RAB 90.6 0.13 4.5E-06 49.3 3.1 23 430-452 11-33 (180)
453 1fzq_A ADP-ribosylation factor 90.5 0.1 3.5E-06 50.9 2.3 24 429-452 16-39 (181)
454 3b6e_A Interferon-induced heli 90.5 0.36 1.2E-05 47.8 6.4 24 429-452 48-71 (216)
455 2bme_A RAB4A, RAS-related prot 90.5 0.12 4.2E-06 49.9 2.8 23 430-452 11-33 (186)
456 1m7b_A RND3/RHOE small GTP-bin 90.5 0.12 4.2E-06 50.2 2.8 23 430-452 8-30 (184)
457 1m2o_B GTP-binding protein SAR 90.5 0.13 4.3E-06 50.7 2.9 23 430-452 24-46 (190)
458 3kkq_A RAS-related protein M-R 90.4 0.14 4.6E-06 49.5 3.1 23 430-452 19-41 (183)
459 3auy_A DNA double-strand break 90.3 0.12 4.3E-06 57.0 3.1 21 431-451 27-47 (371)
460 1mh1_A RAC1; GTP-binding, GTPa 90.3 0.14 4.9E-06 49.3 3.1 23 430-452 6-28 (186)
461 2b6h_A ADP-ribosylation factor 90.3 0.14 4.9E-06 50.4 3.2 26 427-452 27-52 (192)
462 2gf9_A RAS-related protein RAB 90.3 0.14 4.9E-06 49.9 3.1 23 430-452 23-45 (189)
463 3tkl_A RAS-related protein RAB 90.2 0.14 4.9E-06 49.9 3.1 23 430-452 17-39 (196)
464 4a1f_A DNAB helicase, replicat 90.2 0.2 6.8E-06 54.8 4.5 39 425-463 42-83 (338)
465 3ihw_A Centg3; RAS, centaurin, 90.2 0.15 5E-06 50.0 3.2 22 431-452 22-43 (184)
466 3bwd_D RAC-like GTP-binding pr 90.2 0.16 5.5E-06 48.8 3.4 24 429-452 8-31 (182)
467 1vg8_A RAS-related protein RAB 90.2 0.15 5E-06 50.4 3.2 23 430-452 9-31 (207)
468 2bov_A RAla, RAS-related prote 90.1 0.15 5E-06 50.2 3.1 23 430-452 15-37 (206)
469 1zbd_A Rabphilin-3A; G protein 90.1 0.15 5.1E-06 50.3 3.1 23 430-452 9-31 (203)
470 1moz_A ARL1, ADP-ribosylation 90.1 0.089 3.1E-06 50.8 1.4 24 428-451 17-40 (183)
471 1ksh_A ARF-like protein 2; sma 90.0 0.14 4.9E-06 49.6 2.9 27 427-453 16-42 (186)
472 2fg5_A RAB-22B, RAS-related pr 90.0 0.14 4.9E-06 50.2 2.9 23 430-452 24-46 (192)
473 3dz8_A RAS-related protein RAB 90.0 0.14 4.9E-06 50.1 2.8 24 430-453 24-47 (191)
474 3hdt_A Putative kinase; struct 89.9 0.16 5.6E-06 52.2 3.3 29 431-459 16-44 (223)
475 2axn_A 6-phosphofructo-2-kinas 89.8 0.18 6.3E-06 58.4 4.1 27 429-455 35-61 (520)
476 3reg_A RHO-like small GTPase; 89.8 0.16 5.5E-06 49.7 3.1 23 430-452 24-46 (194)
477 1zd9_A ADP-ribosylation factor 89.8 0.16 5.6E-06 49.6 3.1 23 430-452 23-45 (188)
478 3b1v_A Ferrous iron uptake tra 89.8 0.15 5.2E-06 53.9 3.1 22 431-452 5-26 (272)
479 2cjw_A GTP-binding protein GEM 89.8 0.16 5.6E-06 50.1 3.1 23 430-452 7-29 (192)
480 3v9p_A DTMP kinase, thymidylat 89.8 0.16 5.5E-06 52.4 3.1 27 428-454 24-50 (227)
481 1z06_A RAS-related protein RAB 89.7 0.17 5.8E-06 49.4 3.2 23 430-452 21-43 (189)
482 2atv_A RERG, RAS-like estrogen 89.7 0.17 5.7E-06 49.8 3.2 25 428-452 27-51 (196)
483 4i1u_A Dephospho-COA kinase; s 89.7 0.17 6E-06 51.5 3.3 29 431-460 11-39 (210)
484 3t5g_A GTP-binding protein RHE 89.7 0.15 5.3E-06 49.0 2.8 22 430-451 7-28 (181)
485 2gf0_A GTP-binding protein DI- 89.7 0.15 5.3E-06 49.8 2.9 23 430-452 9-31 (199)
486 1x3s_A RAS-related protein RAB 89.7 0.17 5.7E-06 49.2 3.1 23 430-452 16-38 (195)
487 2iwr_A Centaurin gamma 1; ANK 89.7 0.13 4.4E-06 49.5 2.3 23 430-452 8-30 (178)
488 3oes_A GTPase rhebl1; small GT 89.7 0.15 5.2E-06 50.4 2.8 24 429-452 24-47 (201)
489 2a5j_A RAS-related protein RAB 89.7 0.17 5.9E-06 49.5 3.1 23 430-452 22-44 (191)
490 3c5c_A RAS-like protein 12; GD 89.6 0.18 6E-06 49.4 3.2 23 430-452 22-44 (187)
491 1f6b_A SAR1; gtpases, N-termin 89.6 0.12 4E-06 51.4 1.9 22 430-451 26-47 (198)
492 2p5s_A RAS and EF-hand domain 89.5 0.18 6E-06 49.8 3.1 26 427-452 26-51 (199)
493 3iby_A Ferrous iron transport 89.5 0.16 5.5E-06 53.1 2.9 22 431-452 3-24 (256)
494 3lxw_A GTPase IMAP family memb 89.5 0.17 5.8E-06 52.5 3.1 25 429-453 21-45 (247)
495 4edh_A DTMP kinase, thymidylat 89.4 0.18 6.1E-06 51.4 3.1 26 429-454 6-31 (213)
496 3cph_A RAS-related protein SEC 89.4 0.18 6.2E-06 49.9 3.1 24 429-452 20-43 (213)
497 2bcg_Y Protein YP2, GTP-bindin 89.4 0.17 5.7E-06 50.1 2.8 23 430-452 9-31 (206)
498 3cbq_A GTP-binding protein REM 89.3 0.13 4.6E-06 50.9 2.1 22 430-451 24-45 (195)
499 2il1_A RAB12; G-protein, GDP, 89.1 0.17 5.7E-06 49.8 2.6 22 431-452 28-49 (192)
500 1mky_A Probable GTP-binding pr 89.1 0.17 5.9E-06 57.1 3.1 24 430-453 181-204 (439)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=1.5e-62 Score=565.37 Aligned_cols=399 Identities=45% Similarity=0.719 Sum_probs=336.9
Q ss_pred ccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHh
Q 002961 421 YRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAV 500 (862)
Q Consensus 421 ~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l 500 (862)
+.+++...|.+++|+||||||||+|+++|+++++.+++.++++++...|.|.+...++.+|..+....|++|||||+|.+
T Consensus 41 ~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l 120 (476)
T 2ce7_A 41 FNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAV 120 (476)
T ss_dssp HHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGT
T ss_pred HhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhh
Confidence 34677888999999999999999999999999999999999999988888888888899999999999999999999999
Q ss_pred hhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHc
Q 002961 501 GRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR 580 (862)
Q Consensus 501 ~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~ 580 (862)
...++...+++......+++.|+..|+++....+++||++||.++.+|++++|||||++.|.+++|+.++|.+|++.+++
T Consensus 121 ~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~ 200 (476)
T 2ce7_A 121 GRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTR 200 (476)
T ss_dssp CCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred hhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHH
Confidence 77654322234456667899999999988777889999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHhcccccc-ccccccchhHHHHHHH
Q 002961 581 KKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDR-KERSSETWRQVAINEA 659 (862)
Q Consensus 581 ~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~~~~~~-~~~~~~~~r~vA~hEa 659 (862)
...+..++++..++..++|++++||.++|++|+..|.+++...|+.+|+..|++....+...+ ...++.+++.+++||+
T Consensus 201 ~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~ 280 (476)
T 2ce7_A 201 NKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEA 280 (476)
T ss_dssp TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--------CCCHHHHHHHHHHHH
T ss_pred hCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHh
Confidence 888888899999999999999999999999999999998888999999999998654432211 2345678899999999
Q ss_pred HHHHHHHhCCCCCccceEEEecCCCCcccceecccchhhhhhccccHHHHHHHHHHhhChhhHHHhhcCCCCccccccch
Q 002961 660 AMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAET 739 (862)
Q Consensus 660 GHAlva~ll~~~~~i~~VTI~pr~g~~lG~t~~~~~e~~~~~~~~Tr~~l~~~I~v~LAGraAEel~fG~~~~stga~~D 739 (862)
||+++++++++.++++++||.|++..++||+++.|.++ .+++||.+|+++|+|+|||||||+++||+ +|+||++|
T Consensus 281 G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~~~p~~~---~~~~~~~~l~~~i~~~l~Gr~ae~~~~g~--~~~ga~~D 355 (476)
T 2ce7_A 281 GHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEED---KYLVSRNELLDKLTALLGGRAAEEVVFGD--VTSGAAND 355 (476)
T ss_dssp HHHHHHHHSTTCCCCCEEECC--------------------CCSCBHHHHHHHHHHHTHHHHHHHHHHSS--CCGGGHHH
T ss_pred hhHHHhhccCCccccceeeeecCcccccceEEEcCccc---ccccCHHHHHHHHHHHHhHHHHHhhhcCC--CCcccHHH
Confidence 99999999999999999999999449999999988765 67899999999999999999999999996 99999999
Q ss_pred HHHHHHHHHHHH-HcCCCC-CC---CCCc-------------ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002961 740 ADNARSAARTFV-LGGLSD-KH---FGLS-------------NFWVADRINEIDTEALRILNLCYERAKEILQRNRNLLD 801 (862)
Q Consensus 740 l~~At~iA~~mv-~~Gm~~-~~---~~~~-------------~~~~~~~~~~id~ev~~iL~~a~~rA~~iL~~~r~~l~ 801 (862)
+++||.+|+.|| .|||++ ++ ++.. ..|++.+...||.+|+++|+++|++|++||++||+.|+
T Consensus 356 l~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~ 435 (476)
T 2ce7_A 356 IERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLD 435 (476)
T ss_dssp HHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcCCceeecCCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999 899998 32 3211 13567788999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCHHHHHHHHhh
Q 002961 802 AVVNELVEKKSLTKQEFFHLVEL 824 (862)
Q Consensus 802 ~la~~LLeketL~~~ei~~il~~ 824 (862)
+||++|+++|+|+++||.+|++.
T Consensus 436 ~~a~~l~~~e~l~~~~~~~~~~~ 458 (476)
T 2ce7_A 436 NIVEILLEKETIEGDELRRILSE 458 (476)
T ss_dssp HHHHHHHHHSEEEHHHHHHHTC-
T ss_pred HHHHHHHHhCeeCHHHHHHHhcc
Confidence 99999999999999999999975
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=8.2e-60 Score=545.45 Aligned_cols=399 Identities=44% Similarity=0.662 Sum_probs=351.7
Q ss_pred ccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHh
Q 002961 421 YRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAV 500 (862)
Q Consensus 421 ~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l 500 (862)
+.+++...|.+++|+||||||||||+++|++.++.+++.++++++...+.+.....++.+|+.+....|+++||||||.+
T Consensus 56 ~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l 135 (499)
T 2dhr_A 56 FHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV 135 (499)
T ss_dssp TTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGT
T ss_pred hhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 44677888899999999999999999999999999999999998887787777777888898887778999999999998
Q ss_pred hhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHc
Q 002961 501 GRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR 580 (862)
Q Consensus 501 ~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~ 580 (862)
...+....+.+.+.....++.++..|+++.....++++++||.++.+|++++|||||+++|.|++|+.++|.+||+.+++
T Consensus 136 ~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~ 215 (499)
T 2dhr_A 136 GRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 215 (499)
T ss_dssp CCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS
T ss_pred HHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh
Confidence 76544222234456677899999999998887889999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHhccccc-cccccccchhHHHHHHH
Q 002961 581 KKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLD-RKERSSETWRQVAINEA 659 (862)
Q Consensus 581 ~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~~~~~-~~~~~~~~~r~vA~hEa 659 (862)
...+..++++..++..++|++++||.++|++|+..|.+++...|+.+|+..|++....+... ....++.+++.++|||+
T Consensus 216 ~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~ 295 (499)
T 2dhr_A 216 GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEA 295 (499)
T ss_dssp SSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHH
Confidence 88888889999999999999999999999999999988888899999999999876543221 22445778899999999
Q ss_pred HHHHHHHhCCCCCccceEEEecCCCCcccceecccchhhhhhccccHHHHHHHHHHhhChhhHHHhhcCCCCccccccch
Q 002961 660 AMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAET 739 (862)
Q Consensus 660 GHAlva~ll~~~~~i~~VTI~pr~g~~lG~t~~~~~e~~~~~~~~Tr~~l~~~I~v~LAGraAEel~fG~~~~stga~~D 739 (862)
||+|+++++++.++|+++||.|+ ++++||+. |.. .+.+++||.+++++|+++|||||||+++||+ +|||+++|
T Consensus 296 g~av~~~~l~~~~~v~~~~i~pr-~~~~g~~~--p~q--~~~~~~t~~~l~~~i~~~lgGr~ae~~~~g~--~~~ga~~D 368 (499)
T 2dhr_A 296 GHALAAHFLEHADGVHKVTIVPR-GRALGFMM--PRR--EDMLHWSRKRLLDQIAVALAGRAAEEIVFDD--VTTGAEND 368 (499)
T ss_dssp HHHHHHCCSSSCCCCCCEESCCS-SCTTCSSH--HHH--TTCCCCCHHHHHHHHHHHHHHHHHHHHHSCS--CCBCCCHH
T ss_pred HHHHHHhhcCCCCeeeEEEeecC-CCcCcccc--cch--hhhhccCHHHHHHHHHHHhhhHhHHHhhhcc--cCcccHHH
Confidence 99999999999999999999999 78999997 431 1357789999999999999999999999996 99999999
Q ss_pred HHHHHHHHHHHH-HcCCCC-CC---CCCc----------ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002961 740 ADNARSAARTFV-LGGLSD-KH---FGLS----------NFWVADRINEIDTEALRILNLCYERAKEILQRNRNLLDAVV 804 (862)
Q Consensus 740 l~~At~iA~~mv-~~Gm~~-~~---~~~~----------~~~~~~~~~~id~ev~~iL~~a~~rA~~iL~~~r~~l~~la 804 (862)
+++||.+|+.|| .|||++ ++ ++.. ..|++.+...||.+|+++|+++|++|++||++|++.|++||
T Consensus 369 l~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a 448 (499)
T 2dhr_A 369 FRQATELARRMITEWGMHPEFGPVAYAVREDTYLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVA 448 (499)
T ss_dssp HHHHHHHHHHHHTTSCCCSSSCSCCCCCCCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCceeecCCCccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 899998 32 3211 13577889999999999999999999999999999999999
Q ss_pred HHHHHhcccCHHHHHHHHhhcC
Q 002961 805 NELVEKKSLTKQEFFHLVELHG 826 (862)
Q Consensus 805 ~~LLeketL~~~ei~~il~~~~ 826 (862)
++|+++|+|+++||.+|++...
T Consensus 449 ~~l~~~e~l~~~~~~~~~~~~~ 470 (499)
T 2dhr_A 449 ETLLERETLTAEEFQRVVEGLP 470 (499)
T ss_dssp HHHHHHSEECHHHHHHHHTTCC
T ss_pred HHHHHhCeeCHHHHHHHhccCC
Confidence 9999999999999999998754
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-37 Score=348.39 Aligned_cols=218 Identities=40% Similarity=0.693 Sum_probs=205.9
Q ss_pred cccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHH
Q 002961 420 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 420 ~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~ 499 (862)
.|..+|+.+|.||+|+||||||||+|++++|++++.+++.++++++...|+|.+...++.+|..++...|||+||||+|+
T Consensus 173 ~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDa 252 (405)
T 4b4t_J 173 LFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 252 (405)
T ss_dssp HHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSC
T ss_pred HHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchh
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHH
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l 579 (862)
+++.+....++++...+.+++.||..||++....+|+||+|||+++.|||+|+||||||++|+|++|+.++|.+||+.++
T Consensus 253 i~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 332 (405)
T 4b4t_J 253 IGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHS 332 (405)
T ss_dssp CTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred hccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHh
Confidence 99887665555566777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHh
Q 002961 580 RKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 637 (862)
Q Consensus 580 ~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 637 (862)
++..+..++|+..+|..|+||||+||.++|++|+..|.++++..||.+||..|+....
T Consensus 333 ~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~ 390 (405)
T 4b4t_J 333 RKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVM 390 (405)
T ss_dssp TTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred cCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 9998889999999999999999999999999999999999999999999999998554
No 4
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=7.4e-38 Score=326.76 Aligned_cols=179 Identities=30% Similarity=0.392 Sum_probs=149.4
Q ss_pred cccccchhHHHHHHHHHHHHHHhCCCCCccceEEEecCCCCcccceecccchhhhhhccccHHHHHHHHHHhhChhhHHH
Q 002961 645 ERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADE 724 (862)
Q Consensus 645 ~~~~~~~r~vA~hEaGHAlva~ll~~~~~i~~VTI~pr~g~~lG~t~~~~~e~~~~~~~~Tr~~l~~~I~v~LAGraAEe 724 (862)
..++.+++++||||||||||++++++.++|++|||+|| |+++|||.+.|.++ .+++||.+|+++|+|+|||||||+
T Consensus 10 ~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPR-G~alG~t~~~P~ed---~~~~tk~~l~~~i~v~LgGRaAEe 85 (238)
T 2di4_A 10 TISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPR-GMALGVTQQLPIED---KHIYDKKDLYNKILVLLGGRAAEE 85 (238)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC--------------------CCCCBHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeec-CCcceEEEeCCccc---ccccCHHHHHHHHHHHHhHHHHHH
Confidence 34589999999999999999999999999999999999 78999999988765 688999999999999999999999
Q ss_pred hhcCCCCccccccchHHHHHHHHHHHH-HcCCCC-C-C--CCC-----------cccchhhhHHHHHHHHHHHHHHHHHH
Q 002961 725 LWCGEGQLSTIWAETADNARSAARTFV-LGGLSD-K-H--FGL-----------SNFWVADRINEIDTEALRILNLCYER 788 (862)
Q Consensus 725 l~fG~~~~stga~~Dl~~At~iA~~mv-~~Gm~~-~-~--~~~-----------~~~~~~~~~~~id~ev~~iL~~a~~r 788 (862)
++||.+++||||++|+++||.+|+.|| .||||+ + + |+. ...|++.+...||.+|+++|+.||++
T Consensus 86 lifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~iD~Ev~~il~~ay~~ 165 (238)
T 2di4_A 86 VFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEK 165 (238)
T ss_dssp HHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCccccccccccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 999766799999999999999999999 899998 3 2 321 12367788999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhhcCC
Q 002961 789 AKEILQRNRNLLDAVVNELVEKKSLTKQEFFHLVELHGS 827 (862)
Q Consensus 789 A~~iL~~~r~~l~~la~~LLeketL~~~ei~~il~~~~~ 827 (862)
|++||++||+.|++||++||++|||+++||.+|++.++.
T Consensus 166 a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~~~ 204 (238)
T 2di4_A 166 AKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLYGI 204 (238)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccCCC
Confidence 999999999999999999999999999999999998753
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-36 Score=341.03 Aligned_cols=219 Identities=39% Similarity=0.692 Sum_probs=206.0
Q ss_pred cccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHH
Q 002961 420 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 420 ~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~ 499 (862)
.|..+|+.+|.||+|+||||||||+|+++||++++.+++.++++++...|+|.....++.+|..++...|||+||||+|+
T Consensus 207 ~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDa 286 (437)
T 4b4t_I 207 LYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDA 286 (437)
T ss_dssp HHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESS
T ss_pred HHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhh
Confidence 35578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHH
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l 579 (862)
++..+...+.++......+++.||..||++...++++||+|||+++.|||+|+||||||++|+|++|+.++|.+||+.++
T Consensus 287 i~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l 366 (437)
T 4b4t_I 287 IGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHT 366 (437)
T ss_dssp SSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHH
T ss_pred hcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHh
Confidence 99888665555666777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHhc
Q 002961 580 RKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEER 638 (862)
Q Consensus 580 ~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~ 638 (862)
++..+..++|+..+|..|+||||+||.++|++|+..|.++++..||.+||..|++....
T Consensus 367 ~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~ 425 (437)
T 4b4t_I 367 SKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMK 425 (437)
T ss_dssp TTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred cCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999986543
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-36 Score=342.38 Aligned_cols=217 Identities=41% Similarity=0.698 Sum_probs=204.7
Q ss_pred cccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHH
Q 002961 420 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 420 ~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~ 499 (862)
.|..+|+.+|.||+|+||||||||+|+++||++++.+++.++++.+...|+|.+...++.+|..++...|||+||||+|+
T Consensus 206 ~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDa 285 (434)
T 4b4t_M 206 KFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDA 285 (434)
T ss_dssp HHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHH
T ss_pred HHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhh
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHH
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l 579 (862)
++..+.....++......+++.||..||++...++|+||+|||+++.|||+|+||||||++|+|++|+.++|.+||+.++
T Consensus 286 l~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 365 (434)
T 4b4t_M 286 IGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHS 365 (434)
T ss_dssp HHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHh
Confidence 99887665555666777889999999999999899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHH
Q 002961 580 RKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 636 (862)
Q Consensus 580 ~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~ 636 (862)
++..+..++|+..+|..|+||||+||.++|++|+..|.++++..|+.+||..|+...
T Consensus 366 ~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 366 RKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred cCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998743
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-36 Score=341.27 Aligned_cols=218 Identities=44% Similarity=0.730 Sum_probs=205.2
Q ss_pred cccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHH
Q 002961 420 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 420 ~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~ 499 (862)
.|..+|+.+|.||+|+||||||||+|+++||++++.+++.++++++...|+|.+...++.+|..++...|||+||||+|+
T Consensus 206 ~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDa 285 (437)
T 4b4t_L 206 IFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDA 285 (437)
T ss_dssp HHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCS
T ss_pred HHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccc
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHH
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l 579 (862)
++..+...+.+++.....+++.||..||++...++++||+|||+++.|||+|+||||||++|+|++|+.++|.+||+.++
T Consensus 286 i~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 365 (437)
T 4b4t_L 286 IGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHT 365 (437)
T ss_dssp SSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHH
T ss_pred cccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHh
Confidence 99887665555666677889999999999999899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHh
Q 002961 580 RKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 637 (862)
Q Consensus 580 ~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 637 (862)
++.....++|+..+|..|+||||+||.++|++|+..|.++++..|+.+||..|+....
T Consensus 366 ~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~ 423 (437)
T 4b4t_L 366 AKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVA 423 (437)
T ss_dssp HTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHH
T ss_pred cCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 9998889999999999999999999999999999999999999999999999998543
No 8
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-36 Score=340.68 Aligned_cols=219 Identities=37% Similarity=0.634 Sum_probs=206.0
Q ss_pred cccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHH
Q 002961 420 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 420 ~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~ 499 (862)
.|..+|+.+|.||||+||||||||+|+++||++++.+++.++++.+...|+|.+...++.+|..++...|||+||||+|.
T Consensus 234 ~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDa 313 (467)
T 4b4t_H 234 RFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDA 313 (467)
T ss_dssp HHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTT
T ss_pred HHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeeccccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHH
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l 579 (862)
++..+...+.++......+++.+|..||++....+|+||+|||+++.||++|+||||||++|+|++|+.++|.+||+.++
T Consensus 314 i~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l 393 (467)
T 4b4t_H 314 VGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHS 393 (467)
T ss_dssp TSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHH
T ss_pred ccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHh
Confidence 99887665555566777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHhc
Q 002961 580 RKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEER 638 (862)
Q Consensus 580 ~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~ 638 (862)
+...+..++|+..||..|+||||+||.++|++|+..|.++++..||.+||..|++....
T Consensus 394 ~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 394 KSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVIS 452 (467)
T ss_dssp TTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999986544
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=336.26 Aligned_cols=218 Identities=39% Similarity=0.610 Sum_probs=204.6
Q ss_pred cccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHH
Q 002961 420 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 420 ~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~ 499 (862)
.|..+|+.+|+|++|+||||||||+|+++||++++.+++.++++++...|+|.+...++.+|..++...|||+||||+|+
T Consensus 197 ~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~ 276 (428)
T 4b4t_K 197 LYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDS 276 (428)
T ss_dssp HHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHH
T ss_pred HHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhh
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCC-CCCHHhHHHHHHHH
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIP-KPGLIGRMEILKVH 578 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~-~P~~~~R~~Il~~~ 578 (862)
++..+.....+++...+.+++.||..||++....+++||+|||+++.|||+|+||||||++|+|| +|+.++|..||+.+
T Consensus 277 i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~ 356 (428)
T 4b4t_K 277 IATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTI 356 (428)
T ss_dssp HHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHH
T ss_pred hhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 99887665555566677789999999999999999999999999999999999999999999997 89999999999999
Q ss_pred HccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHh
Q 002961 579 ARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 637 (862)
Q Consensus 579 l~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 637 (862)
+++..+..++|+..+|..|+||||+||.++|++|+..|.++++..|+.+||..|+....
T Consensus 357 ~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 357 ASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQV 415 (428)
T ss_dssp HHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHS
T ss_pred hcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhh
Confidence 99999889999999999999999999999999999999999999999999999987543
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.97 E-value=4.1e-32 Score=327.85 Aligned_cols=202 Identities=43% Similarity=0.764 Sum_probs=156.6
Q ss_pred cccccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHH
Q 002961 418 SDMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDEL 497 (862)
Q Consensus 418 ~~~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEi 497 (862)
.+.+..+++.++.+++|+||||||||+++++||++++.+++.++.+++...|+|.....++.+|+.++...||||||||+
T Consensus 500 p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEi 579 (806)
T 3cf2_A 500 PDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDEL 579 (806)
T ss_dssp SGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCG
T ss_pred HHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhh
Confidence 34566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHH
Q 002961 498 DAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKV 577 (862)
Q Consensus 498 d~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~ 577 (862)
|+++..++...++++...+.+++.||.+||++....+|+||+|||+++.||++++||||||++|+|++|+.++|.+||+.
T Consensus 580 Dsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~ 659 (806)
T 3cf2_A 580 DSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA 659 (806)
T ss_dssp GGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTT
T ss_pred hHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHH
Confidence 99998876544445556667899999999999998999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Q 002961 578 HARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 619 (862)
Q Consensus 578 ~l~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~ 619 (862)
++++.++..++|+..||..|+||||+||.++|++|+..|.++
T Consensus 660 ~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~ 701 (806)
T 3cf2_A 660 NLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701 (806)
T ss_dssp TSSCC--CCC----------------CHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999988889999999999999999999999999999988875
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.96 E-value=1.3e-29 Score=306.05 Aligned_cols=216 Identities=43% Similarity=0.710 Sum_probs=197.5
Q ss_pred ccccccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHH
Q 002961 417 FSDMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDE 496 (862)
Q Consensus 417 ~~~~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDE 496 (862)
+.+.|..+++.+|.||+|+||||||||+|+++||++++.+++.+++.++...|.|.....++.+|+.++...|+||||||
T Consensus 226 ~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDE 305 (806)
T 3cf2_A 226 HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDE 305 (806)
T ss_dssp CCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEES
T ss_pred CHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEeh
Confidence 34466789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHH
Q 002961 497 LDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILK 576 (862)
Q Consensus 497 id~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~ 576 (862)
+|.+++.+.. ++++..+.++++|+..|+++..+++|+||++||+++.||++|+||||||+.|+++.|+.++|.+||+
T Consensus 306 iDal~~~r~~---~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~ 382 (806)
T 3cf2_A 306 LDAIAPKREK---THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382 (806)
T ss_dssp GGGTCCTTTT---CCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHH
T ss_pred hcccccccCC---CCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHH
Confidence 9999877642 4456667789999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhC-----------------CcccCHHHHHHHHHH
Q 002961 577 VHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG-----------------RTEITTDDLLQAAQI 635 (862)
Q Consensus 577 ~~l~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~-----------------~~~It~edl~~Al~~ 635 (862)
.++++..+..++|+..+|..|.||+++||.++|++|+..|.++. ...|+.+|+..|+..
T Consensus 383 ~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~ 458 (806)
T 3cf2_A 383 IHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 458 (806)
T ss_dssp HTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSS
T ss_pred HHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHh
Confidence 99999888899999999999999999999999999998887652 134788899998863
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=5.9e-27 Score=248.54 Aligned_cols=216 Identities=53% Similarity=0.887 Sum_probs=188.8
Q ss_pred cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhh
Q 002961 422 RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501 (862)
Q Consensus 422 ~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~ 501 (862)
..++...+.+++|+||||||||||+++|++.++.+++.+++..+...+.+.....+..+|+.+....|+++++||+|.+.
T Consensus 38 ~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~ 117 (257)
T 1lv7_A 38 QKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVG 117 (257)
T ss_dssp -----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHT
T ss_pred HHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhc
Confidence 34566778899999999999999999999999999999999988888888888888999999988889999999999997
Q ss_pred hhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHcc
Q 002961 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK 581 (862)
Q Consensus 502 ~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~ 581 (862)
..+......+.+.....++.++..++++....+++||++||.++.+|++++|+|||++.+.+++|+.++|.+|++.++..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~ 197 (257)
T 1lv7_A 118 RQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 197 (257)
T ss_dssp CCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred cCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc
Confidence 65543222333445568889999999988778899999999999999999999999999999999999999999999988
Q ss_pred CCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHh
Q 002961 582 KPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 637 (862)
Q Consensus 582 ~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 637 (862)
..+..+.++..++..++||+++||.++|+.|...|..++...|+.+|+..|+....
T Consensus 198 ~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 198 VPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred CCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 88888888999999999999999999999999999999989999999999987543
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.95 E-value=2.1e-27 Score=258.74 Aligned_cols=215 Identities=42% Similarity=0.734 Sum_probs=186.8
Q ss_pred cccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHH
Q 002961 420 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 420 ~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~ 499 (862)
.+.++++.++.+++|+||||||||+|+++|++.++.+++.++++.+...++|.....+..+|..+....|+++||||+|.
T Consensus 40 ~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~ 119 (301)
T 3cf0_A 40 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS 119 (301)
T ss_dssp HHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTH
T ss_pred HHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHH
Confidence 34467788899999999999999999999999999999999999888888888888889999999999999999999999
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHH
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l 579 (862)
+...++.....++...+..++.|+..|+++....+++||+|||.++.+|++++|+|||+..|++++|+.++|.+|++.++
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 120 IAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp HHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred HhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHH
Confidence 98765433223333344577889999998877788999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhC-------------------------CcccCHHHHHHHHH
Q 002961 580 RKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG-------------------------RTEITTDDLLQAAQ 634 (862)
Q Consensus 580 ~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~-------------------------~~~It~edl~~Al~ 634 (862)
....+..++++..++..+.||+|+||.++|+.|+..|.++. ...|+.+|+..|+.
T Consensus 200 ~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~ 279 (301)
T 3cf0_A 200 RKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMR 279 (301)
T ss_dssp TTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHT
T ss_pred ccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHH
Confidence 88877788999999999999999999999999988776542 13578888888875
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.94 E-value=4.8e-27 Score=252.85 Aligned_cols=211 Identities=41% Similarity=0.702 Sum_probs=176.0
Q ss_pred cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhh
Q 002961 422 RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501 (862)
Q Consensus 422 ~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~ 501 (862)
.++++..+.|++|+||||||||||+++|++.++..++.++..++...+.+.....+..+|+.+....|+++++||+|.++
T Consensus 37 ~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~ 116 (274)
T 2x8a_A 37 KALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALC 116 (274)
T ss_dssp HHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTC
T ss_pred HHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhh
Confidence 35677888889999999999999999999999999999988887776777777778999999988889999999999876
Q ss_pred hhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHcc
Q 002961 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK 581 (862)
Q Consensus 502 ~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~ 581 (862)
..+... ........++.++..|++......++++++||.++.||++++||||||+.|++++|+.++|.+||+.++..
T Consensus 117 ~~r~~~---~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~ 193 (274)
T 2x8a_A 117 PRRSDR---ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKN 193 (274)
T ss_dssp C------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTT
T ss_pred cccCCC---cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhc
Confidence 543211 11112236788999999988888899999999999999999999999999999999999999999999854
Q ss_pred ---CCCCCcccHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHh-----------CCcccCHHHHHHHHHH
Q 002961 582 ---KPMADDVDYLAVASMT--DGMVGAELANIVEVAAINMMRD-----------GRTEITTDDLLQAAQI 635 (862)
Q Consensus 582 ---~~~~~~~dl~~lA~~t--~G~s~adI~~lv~~A~~~A~~~-----------~~~~It~edl~~Al~~ 635 (862)
.....++++..+|..+ +||||+||.++|++|+..|.++ +...|+.+|+..|+..
T Consensus 194 ~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~ 263 (274)
T 2x8a_A 194 GTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKK 263 (274)
T ss_dssp TBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTT
T ss_pred ccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHH
Confidence 3456789999999875 5999999999999999888764 2346999999999864
No 15
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=3.5e-26 Score=245.74 Aligned_cols=217 Identities=48% Similarity=0.790 Sum_probs=194.6
Q ss_pred ccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHh
Q 002961 421 YRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAV 500 (862)
Q Consensus 421 ~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l 500 (862)
+..+++..+.+++|+||||||||+|+++|++.++.+++.+++..+...+.+.....+..+|..+....|++++|||+|.+
T Consensus 43 ~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 122 (285)
T 3h4m_A 43 FEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAI 122 (285)
T ss_dssp HHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHH
T ss_pred HHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHh
Confidence 34566788899999999999999999999999999999999998888888888788899999999999999999999999
Q ss_pred hhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHc
Q 002961 501 GRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR 580 (862)
Q Consensus 501 ~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~ 580 (862)
...+.....++.......+..++..++++....+++||+|||.++.+|+++++++||+.++.+++|+.++|.+|++.++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~ 202 (285)
T 3h4m_A 123 AAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTR 202 (285)
T ss_dssp HBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHT
T ss_pred cccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHh
Confidence 87654433344556667888888889888877899999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHh
Q 002961 581 KKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 637 (862)
Q Consensus 581 ~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 637 (862)
...+..+.++..++..+.|+++++|..+|+.|...|..++...|+.+|+..|+....
T Consensus 203 ~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 203 KMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIM 259 (285)
T ss_dssp TSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHH
T ss_pred cCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHH
Confidence 888888889999999999999999999999999999999999999999999998543
No 16
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.94 E-value=4.2e-26 Score=241.54 Aligned_cols=212 Identities=58% Similarity=0.944 Sum_probs=180.0
Q ss_pred cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhh
Q 002961 422 RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501 (862)
Q Consensus 422 ~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~ 501 (862)
.++++..+.+++|+||||||||||+++|++.++..++.+++..+...+.+.....+..+|+.+....|+++++||+|.+.
T Consensus 42 ~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~ 121 (254)
T 1ixz_A 42 HEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 121 (254)
T ss_dssp HHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHH
T ss_pred HHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhh
Confidence 35667778889999999999999999999999888888887776665666656667888998877788999999999987
Q ss_pred hhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHcc
Q 002961 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK 581 (862)
Q Consensus 502 ~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~ 581 (862)
..+....+.........++.++..|++......++++++||.++.+|++++|+|||++.+.++.|+.++|.+||+.++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~ 201 (254)
T 1ixz_A 122 RKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG 201 (254)
T ss_dssp C---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTT
T ss_pred cccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcC
Confidence 65432111233455667889999999887777889999999999999999999999999999999999999999999988
Q ss_pred CCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 002961 582 KPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 633 (862)
Q Consensus 582 ~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al 633 (862)
..+..++++..++..++|++++||.++|+.|...|.+++...||.+|+.+|+
T Consensus 202 ~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 202 KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 8788888999999999999999999999999999998888899999999875
No 17
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.93 E-value=4.4e-25 Score=237.32 Aligned_cols=212 Identities=58% Similarity=0.944 Sum_probs=179.8
Q ss_pred cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhh
Q 002961 422 RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501 (862)
Q Consensus 422 ~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~ 501 (862)
.++++..+.+++|+||||||||||+++|++.++..++.+++..+...+.+.....+..+|+.+....|+++++||++.+.
T Consensus 66 ~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~ 145 (278)
T 1iy2_A 66 HEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 145 (278)
T ss_dssp HHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHH
T ss_pred HHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhh
Confidence 35667778889999999999999999999999888888887776655666555667889999887789999999999986
Q ss_pred hhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHcc
Q 002961 502 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK 581 (862)
Q Consensus 502 ~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~ 581 (862)
..+..............++.++..|++......++++++||.++.+|++++|++||+++|.+++|+.++|.+||+.++..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~ 225 (278)
T 1iy2_A 146 RKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG 225 (278)
T ss_dssp CC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT
T ss_pred cccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc
Confidence 54322111223455667888999999887777789999999999999999999999999999999999999999999988
Q ss_pred CCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 002961 582 KPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 633 (862)
Q Consensus 582 ~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al 633 (862)
..+..++++..++..++|++++||.++|+.|...|..++...|+.+|+.+|+
T Consensus 226 ~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 226 KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 7788888999999999999999999999999999998888899999999875
No 18
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.92 E-value=2.3e-25 Score=235.68 Aligned_cols=217 Identities=46% Similarity=0.710 Sum_probs=167.4
Q ss_pred cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhh
Q 002961 422 RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 501 (862)
Q Consensus 422 ~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~ 501 (862)
..++...+.+++|+||||||||+++++|++.++.+++.++++.+...+.+.....+..+|..+....|++++|||+|.+.
T Consensus 32 ~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~ 111 (262)
T 2qz4_A 32 LQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVG 111 (262)
T ss_dssp ----CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC----
T ss_pred HHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhh
Confidence 34667888899999999999999999999999999999999988777777777777889999988889999999999997
Q ss_pred hhccCcCC-CCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHc
Q 002961 502 RERGLIKG-SGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR 580 (862)
Q Consensus 502 ~~~~~~~~-Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~ 580 (862)
..+..... .........++.++..+++.....++++|++||.++.+|++++++|||+..+++++|+.++|.+|++.++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~ 191 (262)
T 2qz4_A 112 KKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLK 191 (262)
T ss_dssp ---------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHH
T ss_pred ccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHH
Confidence 65432111 11233345778888889887777789999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcc--cHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHhc
Q 002961 581 KKPMADDV--DYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEER 638 (862)
Q Consensus 581 ~~~~~~~~--dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~ 638 (862)
......+. ....++..+.|+++++|.++++.|+..|.+++...|+.+|+..|+.....
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 192 SLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLA 251 (262)
T ss_dssp HTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHHHH
T ss_pred hCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcc
Confidence 77655443 34789999999999999999999999999888889999999999985543
No 19
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=239.27 Aligned_cols=189 Identities=36% Similarity=0.605 Sum_probs=167.5
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhc-cCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhc
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEA-GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRER 504 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l-~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~ 504 (862)
..++.+++|+||||||||+|++++|+.+ +.+++.++++++...|.|.....++.+|..+....|++|||||+|.+...+
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~ 121 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 121 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCS
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccc
Confidence 4567899999999999999999999999 889999999998888899888889999999999999999999999997765
Q ss_pred cCcCCCCchhHHHHHHHHHHhhcccc-CCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCC
Q 002961 505 GLIKGSGGQERDATLNQLLVCLDGFE-GRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP 583 (862)
Q Consensus 505 ~~~~~Sgge~~r~~l~~LL~~Ld~~~-~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~ 583 (862)
.. ...+..+..++.++..|+++. ...+++||++||.++.+|++++| ||+..+++++|+.++|..||+.++....
T Consensus 122 ~~---~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~ 196 (322)
T 1xwi_A 122 SE---NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQ 196 (322)
T ss_dssp SS---CCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCC
T ss_pred cc---ccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCC
Confidence 32 223445668899999999875 35789999999999999999999 9999999999999999999999998765
Q ss_pred CC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Q 002961 584 MA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 619 (862)
Q Consensus 584 ~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~ 619 (862)
.. .+.++..++..+.||+++||..+|+.|+..+.++
T Consensus 197 ~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 197 NSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp BCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 43 6788999999999999999999999999888765
No 20
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.92 E-value=1.9e-24 Score=250.15 Aligned_cols=209 Identities=44% Similarity=0.721 Sum_probs=189.3
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhh
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGR 502 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~ 502 (862)
.++...+.+++|+||||||||+++++|+..++.+++.++++.+...|+|.....+..+|..+....|++|||||||.+..
T Consensus 232 ~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~ 311 (489)
T 3hu3_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAP 311 (489)
T ss_dssp HHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCB
T ss_pred hcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhcc
Confidence 45677888999999999999999999999999999999999988888888888889999999999999999999999987
Q ss_pred hccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccC
Q 002961 503 ERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK 582 (862)
Q Consensus 503 ~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~ 582 (862)
.+. ...++....+++.|+..|++.....+++||+|||.++.+|++++++|||+..|+++.|+.++|.+||+.++...
T Consensus 312 ~~~---~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~ 388 (489)
T 3hu3_A 312 KRE---KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM 388 (489)
T ss_dssp CTT---SCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTS
T ss_pred ccc---cccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcC
Confidence 643 24466677889999999999888889999999999999999999999999999999999999999999999988
Q ss_pred CCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCc-----------------ccCHHHHHHHHH
Q 002961 583 PMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRT-----------------EITTDDLLQAAQ 634 (862)
Q Consensus 583 ~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~-----------------~It~edl~~Al~ 634 (862)
.+..+.++..++..+.||+++||..+|+.|...+.++... .|+.+|+..|+.
T Consensus 389 ~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~ 457 (489)
T 3hu3_A 389 KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALS 457 (489)
T ss_dssp CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHT
T ss_pred CCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHH
Confidence 8888889999999999999999999999999999887543 478888888876
No 21
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.92 E-value=7.5e-25 Score=240.74 Aligned_cols=190 Identities=37% Similarity=0.652 Sum_probs=165.3
Q ss_pred ccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhc
Q 002961 425 GVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRER 504 (862)
Q Consensus 425 ~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~ 504 (862)
+..++.+++|+||||||||+|+++|+..++.+++.++++.+...|.|.....++.+|..+....|++|||||+|.+...+
T Consensus 47 ~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~ 126 (322)
T 3eie_A 47 NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR 126 (322)
T ss_dssp TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccC
Confidence 34567889999999999999999999999999999999998888999888889999999999999999999999997654
Q ss_pred cCcCCCCchhHHHHHHHHHHhhcccc-CCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCC
Q 002961 505 GLIKGSGGQERDATLNQLLVCLDGFE-GRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP 583 (862)
Q Consensus 505 ~~~~~Sgge~~r~~l~~LL~~Ld~~~-~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~ 583 (862)
.. +.....+..++.++..|+++. ...+++||+|||.++.+|++++| ||+..+++++|+.++|.+||+.++....
T Consensus 127 ~~---~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~ 201 (322)
T 3eie_A 127 GE---GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTP 201 (322)
T ss_dssp --------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCC
T ss_pred CC---CcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCC
Confidence 32 122334557788999999874 45689999999999999999999 9999999999999999999999998765
Q ss_pred CC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Q 002961 584 MA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 619 (862)
Q Consensus 584 ~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~ 619 (862)
.. .+.++..++..+.||+++||.++|+.|...+.++
T Consensus 202 ~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~ 238 (322)
T 3eie_A 202 CVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238 (322)
T ss_dssp CCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 43 6778999999999999999999999998888775
No 22
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.91 E-value=5e-24 Score=237.59 Aligned_cols=190 Identities=37% Similarity=0.649 Sum_probs=161.5
Q ss_pred ccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhc
Q 002961 425 GVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRER 504 (862)
Q Consensus 425 ~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~ 504 (862)
+..++.+|+|+||||||||+|+++|+..++.+++.+++.++...|.|.....++.+|..+....|++|||||+|.+...+
T Consensus 80 ~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r 159 (355)
T 2qp9_X 80 NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR 159 (355)
T ss_dssp SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccC
Confidence 45667889999999999999999999999999999999988888888888888999999998899999999999997654
Q ss_pred cCcCCCCchhHHHHHHHHHHhhccccC-CCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCC
Q 002961 505 GLIKGSGGQERDATLNQLLVCLDGFEG-RGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP 583 (862)
Q Consensus 505 ~~~~~Sgge~~r~~l~~LL~~Ld~~~~-~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~ 583 (862)
.. ......+.+++.|+..|+++.. ..+++||++||.++.+|++++| ||+..+++++|+.++|..||+.++....
T Consensus 160 ~~---~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~ 234 (355)
T 2qp9_X 160 GE---GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTP 234 (355)
T ss_dssp -------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSC
T ss_pred CC---CcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCC
Confidence 32 2334556678889999988754 5689999999999999999999 9999999999999999999999998765
Q ss_pred C-CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Q 002961 584 M-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 619 (862)
Q Consensus 584 ~-~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~ 619 (862)
. ..+.++..|+..+.||+++||.++|+.|+..|.++
T Consensus 235 ~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 235 SVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp BCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 4 36788999999999999999999999999888875
No 23
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.91 E-value=1.3e-25 Score=239.40 Aligned_cols=214 Identities=54% Similarity=0.901 Sum_probs=177.2
Q ss_pred ccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHh
Q 002961 421 YRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAV 500 (862)
Q Consensus 421 ~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l 500 (862)
+..++...+.+++|+||||||||+|+++|++.++.+++.++++.+...+.+.....+..+|..+....|++++|||+|.+
T Consensus 36 ~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l 115 (268)
T 2r62_A 36 YANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAI 115 (268)
T ss_dssp HHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGT
T ss_pred HHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhh
Confidence 34566777889999999999999999999999999999999988877777776666778888888888999999999999
Q ss_pred hhhccCcC-CCCchhHHHHHHHHHHhhccccCC-CcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHH
Q 002961 501 GRERGLIK-GSGGQERDATLNQLLVCLDGFEGR-GNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH 578 (862)
Q Consensus 501 ~~~~~~~~-~Sgge~~r~~l~~LL~~Ld~~~~~-~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~ 578 (862)
...+...+ .++.......++.|+..+++.... ..++||+|||.++.+|++++++|||+..+.+++|+.++|.+||+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~ 195 (268)
T 2r62_A 116 GKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVH 195 (268)
T ss_dssp TC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHH
T ss_pred cccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHH
Confidence 76532111 111222223567788888876543 4589999999999999999999999999999999999999999999
Q ss_pred HccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 579 ARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 579 l~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
+....+..+.++..++..+.|+++++|.++|+.|...|..++...|+.+|+..|+.
T Consensus 196 ~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 251 (268)
T 2r62_A 196 IKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVE 251 (268)
T ss_dssp TSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCT
T ss_pred HhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 98877777888889999999999999999999999888877788899999988764
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.90 E-value=2.8e-23 Score=238.22 Aligned_cols=189 Identities=35% Similarity=0.597 Sum_probs=158.6
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhc-cCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhc
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEA-GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRER 504 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l-~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~ 504 (862)
..++.+++|+||||||||+|+++||..+ +.+++.++++.+...|.|.....++.+|..+....|++|||||+|.+...+
T Consensus 164 ~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~ 243 (444)
T 2zan_A 164 RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 243 (444)
T ss_dssp GCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCS
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCC
Confidence 4567899999999999999999999999 889999999998888888888888999999999999999999999997654
Q ss_pred cCcCCCCchhHHHHHHHHHHhhccccC-CCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCC
Q 002961 505 GLIKGSGGQERDATLNQLLVCLDGFEG-RGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP 583 (862)
Q Consensus 505 ~~~~~Sgge~~r~~l~~LL~~Ld~~~~-~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~ 583 (862)
.. ......+.+++.|+..|+++.. ..+++||+|||.++.+|++++| ||+.++++++|+.++|..||+.++....
T Consensus 244 ~~---~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~ 318 (444)
T 2zan_A 244 SE---NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQ 318 (444)
T ss_dssp SC---CCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSC
T ss_pred CC---ccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCC
Confidence 32 2334456688999999998753 5789999999999999999999 9999999999999999999999997765
Q ss_pred C-CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Q 002961 584 M-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 619 (862)
Q Consensus 584 ~-~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~ 619 (862)
. ..+.++..|+..+.||+++||.++|+.|+..+.++
T Consensus 319 ~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 319 NSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp EECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 4 36788999999999999999999999999888764
No 25
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.89 E-value=8.4e-25 Score=267.63 Aligned_cols=201 Identities=43% Similarity=0.760 Sum_probs=173.5
Q ss_pred cccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHH
Q 002961 420 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 420 ~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~ 499 (862)
.+.++++.++.+++|+||||||||+|+++||+.++.+++.++++++...|+|.....+..+|+.++...|+++||||+|.
T Consensus 502 ~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~ 581 (806)
T 1ypw_A 502 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp TTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHH
T ss_pred HHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhh
Confidence 34467888899999999999999999999999999999999999998899999988899999999999999999999999
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHH
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l 579 (862)
++..++...+.++...+.+++.||..|+++....+++||+|||.++.||++++|||||+.+|+|++|+.++|..||+.++
T Consensus 582 l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 582 IAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp HCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred hhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 98776433223344567789999999999988889999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhC
Q 002961 580 RKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG 620 (862)
Q Consensus 580 ~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~ 620 (862)
....+..++++..++..+.|||+++|.++|+.|...|.++.
T Consensus 662 ~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 662 RKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp SCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred ccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999998888654
No 26
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.88 E-value=5.5e-24 Score=231.06 Aligned_cols=227 Identities=19% Similarity=0.200 Sum_probs=155.9
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHH----HhcCCceeEhHHHHH
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEA----KDNAPSVVFIDELDA 499 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a----~~~~p~iL~iDEid~ 499 (862)
.+.++|.+++|+||||||||+|+++||..++.+++.++++++...|.|.....+..+|..+ +...|+|++|||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 3567788999999999999999999999999999999999988888888888888888887 466899999999999
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhcccc-----------CCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCH
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGL 568 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~-----------~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~ 568 (862)
+++++... ..+....+.+.+.|+..||+.. ...+++||+|||.++.+|++++|+|||+.+|++ |+.
T Consensus 111 ~~~~~~~~-~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~ 187 (293)
T 3t15_A 111 GAGRMGGT-TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 187 (293)
T ss_dssp --------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CCH
T ss_pred hcCCCCCC-ccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cCH
Confidence 87754321 1112233446678888887432 456799999999999999999999999998874 699
Q ss_pred HhHHHHHHHHHccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHH---------hcc
Q 002961 569 IGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE---------ERG 639 (862)
Q Consensus 569 ~~R~~Il~~~l~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~---------~~~ 639 (862)
++|.+|++.++.. .+++...++..+.||++++|..+.. .... +..+.+.+.+... ...
T Consensus 188 ~~r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~~~~-l~~~--------~~~~~i~~~~~~~g~~~~~~~~~~~ 254 (293)
T 3t15_A 188 EDRIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDFFGA-LRAR--------VYDDEVRKWVSGTGIEKIGDKLLNS 254 (293)
T ss_dssp HHHHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHHHHH-HHHH--------HHHHHHHHHHHHTCSTTCHHHHTSC
T ss_pred HHHHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHHHHH-HHHH--------HHHHHHHHHHHHhCHHHHHHHHHcC
Confidence 9999999988864 3567888999999999988853311 0000 1112222222211 001
Q ss_pred ccccccccccchhHHHHHHHHHHHHHH
Q 002961 640 MLDRKERSSETWRQVAINEAAMAVVAV 666 (862)
Q Consensus 640 ~~~~~~~~~~~~r~vA~hEaGHAlva~ 666 (862)
........+......++||+||+++..
T Consensus 255 ~~~~~~~~~~~~~~~~l~~~g~~~~~e 281 (293)
T 3t15_A 255 FDGPPTFEQPKMTIEKLLEYGNMLVQE 281 (293)
T ss_dssp SSCSCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHHH
Confidence 011122234456788999999999864
No 27
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.87 E-value=3.7e-22 Score=215.77 Aligned_cols=203 Identities=35% Similarity=0.566 Sum_probs=168.7
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccC
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 506 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~ 506 (862)
.++.+++|+||||||||+++++|++.++.+++.++++.+...+.+.....++.+|..+....|+++||||+|.+...+..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~ 131 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS 131 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC--
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhcccccc
Confidence 35678999999999999999999999999999999998887788877777888999998889999999999999765432
Q ss_pred cCCCCchhHHHHHHHHHHhhccccCC---CcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCC
Q 002961 507 IKGSGGQERDATLNQLLVCLDGFEGR---GNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP 583 (862)
Q Consensus 507 ~~~Sgge~~r~~l~~LL~~Ld~~~~~---~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~ 583 (862)
. ..+......+.++..+++.... .+++||++||.++.+++++++ ||+..+++++|+.++|..|++.++....
T Consensus 132 ~---~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~ 206 (297)
T 3b9p_A 132 S---EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQG 206 (297)
T ss_dssp ------CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGS
T ss_pred C---cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcC
Confidence 1 1222344667788888876543 579999999999999999999 9999999999999999999999987654
Q ss_pred C-CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCC------------cccCHHHHHHHHH
Q 002961 584 M-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGR------------TEITTDDLLQAAQ 634 (862)
Q Consensus 584 ~-~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~------------~~It~edl~~Al~ 634 (862)
. ..+.++..++..+.|+++++|..+|+.|...+.++.. ..|+.+|+..|+.
T Consensus 207 ~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~ 270 (297)
T 3b9p_A 207 SPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLK 270 (297)
T ss_dssp CCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHH
Confidence 3 2456788899999999999999999999888887642 4699999998875
No 28
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.8e-21 Score=216.99 Aligned_cols=206 Identities=32% Similarity=0.535 Sum_probs=172.6
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccC
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 506 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~ 506 (862)
..+.+++|+||+|||||+|+++|+..++.+++.++++.+...|.+.....++.+|..+....|++|||||+|.+...+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~ 194 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD 194 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC
Confidence 56788999999999999999999999999999999999888888877777888999998888999999999999765421
Q ss_pred cCCCCchhHHHHHHHHHHhhccccC--CCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCCC
Q 002961 507 IKGSGGQERDATLNQLLVCLDGFEG--RGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM 584 (862)
Q Consensus 507 ~~~Sgge~~r~~l~~LL~~Ld~~~~--~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~~ 584 (862)
.........++.++..+++... ..+++||++||.++.+++++++ ||+..++++.|+.++|.+|+..++.....
T Consensus 195 ---~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~ 269 (357)
T 3d8b_A 195 ---GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQC 269 (357)
T ss_dssp ------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCB
T ss_pred ---CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCC
Confidence 2234555678889989887642 4679999999999999999999 99999999999999999999999876543
Q ss_pred C-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhC------------CcccCHHHHHHHHHHHh
Q 002961 585 A-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG------------RTEITTDDLLQAAQIEE 637 (862)
Q Consensus 585 ~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~------------~~~It~edl~~Al~~~~ 637 (862)
. .+.++..++..+.||++++|..+|+.|...+.++. ...|+.+|+..|+....
T Consensus 270 ~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 335 (357)
T 3d8b_A 270 CLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVR 335 (357)
T ss_dssp CCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHG
T ss_pred CccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcC
Confidence 2 45678899999999999999999999988887742 35799999999987554
No 29
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.86 E-value=2.6e-21 Score=217.98 Aligned_cols=204 Identities=34% Similarity=0.559 Sum_probs=164.1
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccC
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 506 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~ 506 (862)
..+.+++|+||+|||||+|+++|+..++.+++.++++.+...|.+.....+..+|..+....|++|||||||.+...+..
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~ 225 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE 225 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC
Confidence 34678999999999999999999999999999999999888888888888899999999999999999999999665422
Q ss_pred cCCCCchhHHHHHHHHHHhhccccC--CCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCCC
Q 002961 507 IKGSGGQERDATLNQLLVCLDGFEG--RGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM 584 (862)
Q Consensus 507 ~~~Sgge~~r~~l~~LL~~Ld~~~~--~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~~ 584 (862)
.........++.|+..++++.. ..+++||++||.++.+++++++ ||+.+|+++.|+.++|..||+.++.....
T Consensus 226 ---~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~ 300 (389)
T 3vfd_A 226 ---GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGS 300 (389)
T ss_dssp ------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCC
T ss_pred ---ccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCC
Confidence 2223345577888888887654 4679999999999999999999 99999999999999999999999876433
Q ss_pred -CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh------------CCcccCHHHHHHHHHH
Q 002961 585 -ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD------------GRTEITTDDLLQAAQI 635 (862)
Q Consensus 585 -~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~------------~~~~It~edl~~Al~~ 635 (862)
..+.++..++..+.|+++++|..+++.|...+.++ +...|+.+|+..++..
T Consensus 301 ~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~ 364 (389)
T 3vfd_A 301 PLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKK 364 (389)
T ss_dssp CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHH
Confidence 24557889999999999999999999998888876 3357999999998864
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.82 E-value=6.4e-20 Score=224.50 Aligned_cols=214 Identities=43% Similarity=0.714 Sum_probs=187.6
Q ss_pred ccccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHH
Q 002961 419 DMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELD 498 (862)
Q Consensus 419 ~~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid 498 (862)
..+.++++..+.+|+|+||||||||||+++|++.++.+++.+++.++...+.+.....+..+|+.+....|+++|+||++
T Consensus 228 ~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid 307 (806)
T 1ypw_A 228 ALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp GGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGG
T ss_pred HHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHH
Confidence 34567889999999999999999999999999999999999999888777888888888999999998899999999999
Q ss_pred HhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHH
Q 002961 499 AVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH 578 (862)
Q Consensus 499 ~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~ 578 (862)
.++..++. +.++..+..++.|+..+++......+++|++||+++.+|+++.++|||+..+.++.|+.++|.+|++.+
T Consensus 308 ~l~~~~~~---~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~ 384 (806)
T 1ypw_A 308 AIAPKREK---THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIH 384 (806)
T ss_dssp GTSCTTSC---CCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHT
T ss_pred Hhhhcccc---ccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHH
Confidence 99776532 445666778889999999988888999999999999999999999999999999999999999999999
Q ss_pred HccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCC-----------------cccCHHHHHHHHHH
Q 002961 579 ARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGR-----------------TEITTDDLLQAAQI 635 (862)
Q Consensus 579 l~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~-----------------~~It~edl~~Al~~ 635 (862)
+....+..+.++..++..+.|++++++..+++.|...+.++.. ..++.+|+..++..
T Consensus 385 ~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~ 458 (806)
T 1ypw_A 385 TKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 458 (806)
T ss_dssp TTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHH
T ss_pred HhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccc
Confidence 9888888888999999999999999999999999887776533 23566677777653
No 31
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.65 E-value=4.3e-18 Score=199.84 Aligned_cols=194 Identities=26% Similarity=0.314 Sum_probs=127.9
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchh---------hhcccchhhHHHHHHHHHhcCCceeEhHHHH
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE---------IYVGVGASRVRSLYQEAKDNAPSVVFIDELD 498 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~---------~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid 498 (862)
.+..++|+||||||||||+++|++.++.+++.++++.... .|.|.....+...|..+....| ++||||+|
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid 185 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEID 185 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSE-EEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhh
Confidence 4567999999999999999999999999999998876433 2455555555566666554555 89999999
Q ss_pred HhhhhccCcCCCCchhHHHHHHHHHHhhccccC-------------CCcEEEEEecCCCCCCCccccCCCCccccccCCC
Q 002961 499 AVGRERGLIKGSGGQERDATLNQLLVCLDGFEG-------------RGNVITIASTNRPDILDPALVRPGRFDRKIFIPK 565 (862)
Q Consensus 499 ~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~-------------~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~ 565 (862)
.+...+. ....+.|+..|+.... ..++++|+|||.++.++++|++ ||+ +|.|+.
T Consensus 186 ~l~~~~~----------~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~ 252 (543)
T 3m6a_A 186 KMSSDFR----------GDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAG 252 (543)
T ss_dssp SCC-------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCC
T ss_pred hhhhhhc----------cCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCC
Confidence 9865421 1145677777765321 1568999999999999999999 996 799999
Q ss_pred CCHHhHHHHHHHHHcc-----CCCC------CcccHHHHHhhcCC-CCHHHHHHH----HHHHHHHHHHh--CCcccCHH
Q 002961 566 PGLIGRMEILKVHARK-----KPMA------DDVDYLAVASMTDG-MVGAELANI----VEVAAINMMRD--GRTEITTD 627 (862)
Q Consensus 566 P~~~~R~~Il~~~l~~-----~~~~------~~~dl~~lA~~t~G-~s~adI~~l----v~~A~~~A~~~--~~~~It~e 627 (862)
|+.+++..|++.++.. ..+. ++..+..++....+ ...+++++. |+.+...+... +...||.+
T Consensus 253 ~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~ 332 (543)
T 3m6a_A 253 YTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEK 332 (543)
T ss_dssp CCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHH
Confidence 9999999999987622 2221 12334455553333 334555544 44444333333 34579999
Q ss_pred HHHHHHHH
Q 002961 628 DLLQAAQI 635 (862)
Q Consensus 628 dl~~Al~~ 635 (862)
++.+++..
T Consensus 333 ~l~~~Lg~ 340 (543)
T 3m6a_A 333 NLQDFIGK 340 (543)
T ss_dssp TTHHHHCS
T ss_pred HHHHHhCC
Confidence 99998863
No 32
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.62 E-value=2.5e-18 Score=197.78 Aligned_cols=178 Identities=20% Similarity=0.253 Sum_probs=118.2
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhcc--CceeeeecccchhhhcccchhhHHHHHHHH---HhcCCceeEhHHHH
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEAG--VNFFSISASQFVEIYVGVGASRVRSLYQEA---KDNAPSVVFIDELD 498 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~--~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a---~~~~p~iL~iDEid 498 (862)
.+..++.+++|+||||||||++++++|..++ .+++.++++.+...|.+.... +..+|..+ +...|+++|+||+|
T Consensus 58 ~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid 136 (456)
T 2c9o_A 58 SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVT 136 (456)
T ss_dssp TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEE
T ss_pred hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechh
Confidence 3445678999999999999999999999998 899999999988888887766 78888887 66789999999999
Q ss_pred HhhhhccCcCCCC-chhHH---------------HHHHHHHHhhc--cccCCCcEEEEEecCCCCCCCccccCCCCccc-
Q 002961 499 AVGRERGLIKGSG-GQERD---------------ATLNQLLVCLD--GFEGRGNVITIASTNRPDILDPALVRPGRFDR- 559 (862)
Q Consensus 499 ~l~~~~~~~~~Sg-ge~~r---------------~~l~~LL~~Ld--~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~- 559 (862)
.++..+.....++ +...+ ...+.++..++ +....+.++|++|||.++.+|++++|+||||+
T Consensus 137 ~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~ 216 (456)
T 2c9o_A 137 ELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLE 216 (456)
T ss_dssp EEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCS
T ss_pred hcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcc
Confidence 9987664321111 11101 11233455554 23334456666999999999999999999999
Q ss_pred -cccCCCCC--HHhHHHHHHHHHccCCCCCcccHHHHHhhcCCCCHHHHHHHHHH
Q 002961 560 -KIFIPKPG--LIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEV 611 (862)
Q Consensus 560 -~I~~~~P~--~~~R~~Il~~~l~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~ 611 (862)
.+++|.|+ .+.|.+|++.+.. .|++.++..+.| |+||.++|+.
T Consensus 217 ~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 217 AEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQDILSMMGQ 262 (456)
T ss_dssp SSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC-----------------
T ss_pred eeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hhHHHHHHhh
Confidence 56777774 4778877764432 378889999999 9999999864
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.61 E-value=2.5e-15 Score=166.90 Aligned_cols=190 Identities=21% Similarity=0.290 Sum_probs=137.9
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccC--ceeeeecccchhhh-----------------------------------
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISASQFVEIY----------------------------------- 469 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~--~~~~i~~~~~~~~~----------------------------------- 469 (862)
.++.+++|+||||||||+++++++..++. +++.+++..+...+
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~ 147 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVI 147 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhh
Confidence 44578999999999999999999998864 56666654422111
Q ss_pred --------------cccchhhHHHHHHHHHh-----c----CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhh
Q 002961 470 --------------VGVGASRVRSLYQEAKD-----N----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 526 (862)
Q Consensus 470 --------------~gq~~~~l~~~f~~a~~-----~----~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~L 526 (862)
.+.....++..+..+.. . .|+++||||++.+... .++.|+..+
T Consensus 148 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~--------------~~~~L~~~l 213 (368)
T 3uk6_A 148 NSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIE--------------SFSFLNRAL 213 (368)
T ss_dssp TC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBHH--------------HHHHHHHHT
T ss_pred hcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccChH--------------HHHHHHHHh
Confidence 11112233444443322 1 2679999999988543 567777777
Q ss_pred ccccCCCcEEEEEec-----------CCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCCCC-CcccHHHHH
Q 002961 527 DGFEGRGNVITIAST-----------NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVA 594 (862)
Q Consensus 527 d~~~~~~~vlvI~tT-----------N~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA 594 (862)
+.... .++++++. |.+..++++|++ ||.. +.|++|+.+++..|++.++...... ++..+..++
T Consensus 214 e~~~~--~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~ 288 (368)
T 3uk6_A 214 ESDMA--PVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLT 288 (368)
T ss_dssp TCTTC--CEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred hCcCC--CeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 65432 45555543 357789999999 8875 8999999999999999888754332 344567788
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 002961 595 SMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 635 (862)
Q Consensus 595 ~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 635 (862)
..+.+.+++++.++++.|...|...+...||.+|+..++..
T Consensus 289 ~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 289 RIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 88875689999999999999998999999999999999874
No 34
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.61 E-value=9.1e-16 Score=166.24 Aligned_cols=192 Identities=18% Similarity=0.220 Sum_probs=138.1
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhcc-------CceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHh
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAG-------VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAV 500 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~-------~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l 500 (862)
++.+++|+||||||||+++++++..++ .+++.+++..+...++|.....+..+|..+ .+++++|||+|.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l 142 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYL 142 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhh
Confidence 345699999999999999999999873 378888988887778887776667777655 4679999999998
Q ss_pred hhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCC-----CCCccccCCCCccccccCCCCCHHhHHHHH
Q 002961 501 GRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEIL 575 (862)
Q Consensus 501 ~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~-----~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il 575 (862)
..... ++......++.|+..|+.. ..++++|++||... .++|+|++ ||+.+|.|++|+.+++..|+
T Consensus 143 ~~~~~-----~~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il 213 (309)
T 3syl_A 143 YRPDN-----ERDYGQEAIEILLQVMENN--RDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIA 213 (309)
T ss_dssp CCCC--------CCTHHHHHHHHHHHHHC--TTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHH
T ss_pred ccCCC-----cccccHHHHHHHHHHHhcC--CCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHH
Confidence 64321 1122344777888888754 35678888887643 25799999 99999999999999999999
Q ss_pred HHHHccCCCC-CcccHHHHHhh-------cCCCCHHHHHHHHHHHHHHHHHh----CCcccCHHHHHH
Q 002961 576 KVHARKKPMA-DDVDYLAVASM-------TDGMVGAELANIVEVAAINMMRD----GRTEITTDDLLQ 631 (862)
Q Consensus 576 ~~~l~~~~~~-~~~dl~~lA~~-------t~G~s~adI~~lv~~A~~~A~~~----~~~~It~edl~~ 631 (862)
+.++...... ++..+..++.. ....+++++.++++.+...+..+ ....++.+++..
T Consensus 214 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~~ 281 (309)
T 3syl_A 214 GHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALST 281 (309)
T ss_dssp HHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHHHE
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHhh
Confidence 9999765433 22233444443 22235899999999887655443 345666666643
No 35
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.59 E-value=1.4e-14 Score=159.22 Aligned_cols=183 Identities=19% Similarity=0.190 Sum_probs=140.7
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccCc
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLI 507 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~ 507 (862)
.+..++|+||+|||||+++++|+..++.+++.+++..+. ....+...+.. ...++++||||++.+...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~---- 121 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------KSGDLAAILTN--LSEGDILFIDEIHRLSPA---- 121 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------SHHHHHHHHHT--CCTTCEEEEETGGGCCHH----
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------chhHHHHHHHh--ccCCCEEEEechhhcCHH----
Confidence 445799999999999999999999999999998876532 11223333322 245789999999988543
Q ss_pred CCCCchhHHHHHHHHHHhhccccC----------------CCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhH
Q 002961 508 KGSGGQERDATLNQLLVCLDGFEG----------------RGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGR 571 (862)
Q Consensus 508 ~~Sgge~~r~~l~~LL~~Ld~~~~----------------~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R 571 (862)
.++.|+..|+...- ..++++|++||....++++|++ ||+.++.|++|+.+++
T Consensus 122 ----------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~ 189 (338)
T 3pfi_A 122 ----------IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSEL 189 (338)
T ss_dssp ----------HHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHH
T ss_pred ----------HHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHH
Confidence 55666666654320 1148999999999999999999 9999999999999999
Q ss_pred HHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 002961 572 MEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 635 (862)
Q Consensus 572 ~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 635 (862)
..++..++...... ++..+..++..+.| +++.+.++++.+...+...+...|+.+++..++..
T Consensus 190 ~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 190 ALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDFADVNDEEIITEKRANEALNS 253 (338)
T ss_dssp HHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 99999888765433 33446667776655 66788899999887888788888999999988764
No 36
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.58 E-value=6.3e-15 Score=181.92 Aligned_cols=350 Identities=19% Similarity=0.254 Sum_probs=200.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHH
Q 002961 230 SKRAAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKEEERRRKKE-----IRLQKYEESLQDARDNYRYMANVWE 304 (862)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~e~~a~~~el~~~e~~~~~~k~e~q~~~~~~-----~r~~~~~~kl~~~~~~~k~l~~~~k 304 (862)
+.+++.+. .+..+..+.++...|.+++.+++.+.+.+.+...+.++. .|...+.+++...+...+.+...|+
T Consensus 378 p~kai~ll---dea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (854)
T 1qvr_A 378 PDKAIDLI---DEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWE 454 (854)
T ss_dssp HHHHHHHH---HHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHH---HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554 344556667788899999999999999888887775432 3677888888888888888888888
Q ss_pred HHhccccccccccceeeeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhccccCChhh
Q 002961 305 NLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHL 384 (862)
Q Consensus 305 ~~ae~s~~~~~~~~~~~l~~Y~GnYs~y~~~ke~~e~~~~~~k~~e~~~~~i~~le~~l~~~e~~~e~i~~~~~~~~~~l 384 (862)
.+......+... +..........+.+++..+..+..+.....+..+++++...+.. ......+
T Consensus 455 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 517 (854)
T 1qvr_A 455 REREILRKLREA---------QHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEK--------LRGARFV 517 (854)
T ss_dssp HHHHHHHHHHHH---------HHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHH--------SSSCSSC
T ss_pred HHHHHHHHHHHH---------HHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhh--------hcccccc
Confidence 887655442111 11111100001100110111111111122233333333332211 0000111
Q ss_pred hhhcccccccchhhhcccCCCccccccCcc------c----c-ccc------c---cc--ccccc----cCCeEEEECCC
Q 002961 385 KMAMQFMKSGARVRRAYGKGLPQYLERGVD------V----K-FSD------M---YR--RRGVR----IPGGILLCGPP 438 (862)
Q Consensus 385 ~~~~~~~~~~~~V~~~~~i~~~~l~~~~~s------~----~-~~~------~---~~--~l~i~----~~~~vlL~Gpn 438 (862)
..+++.......|..|+++|...+...+.. . . ++. . .. ..++. +...++|+||+
T Consensus 518 ~~~v~~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~ 597 (854)
T 1qvr_A 518 RLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPT 597 (854)
T ss_dssp CSEECHHHHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCS
T ss_pred cCCcCHHHHHHHHHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCC
Confidence 222333334445556666543322110000 0 0 110 0 00 11211 12469999999
Q ss_pred CCchhHHHHHHHhhc---cCceeeeecccchhh-----hcccch-----hhHHHHHHHHHhcCCceeEhHHHHHhhhhcc
Q 002961 439 GVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGA-----SRVRSLYQEAKDNAPSVVFIDELDAVGRERG 505 (862)
Q Consensus 439 GtGKTtLakaLA~~l---~~~~~~i~~~~~~~~-----~~gq~~-----~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~ 505 (862)
|||||+++++|+..+ +.+++.++++.+... .+|... .....+...++...++++||||++.+...
T Consensus 598 GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~-- 675 (854)
T 1qvr_A 598 GVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPD-- 675 (854)
T ss_dssp SSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCHH--
T ss_pred CCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHH--
Confidence 999999999999988 778999998876543 121111 11134455556666789999999987543
Q ss_pred CcCCCCchhHHHHHHHHHHhhcccc---------CCCcEEEEEecCC--------------------------CCCCCcc
Q 002961 506 LIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNR--------------------------PDILDPA 550 (862)
Q Consensus 506 ~~~~Sgge~~r~~l~~LL~~Ld~~~---------~~~~vlvI~tTN~--------------------------~~~Ld~a 550 (862)
+++.|+..|+... +..+++||+|||. ...+.|+
T Consensus 676 ------------~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~ 743 (854)
T 1qvr_A 676 ------------VFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPE 743 (854)
T ss_dssp ------------HHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHH
T ss_pred ------------HHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHH
Confidence 7788888887532 1246889999997 2346788
Q ss_pred ccCCCCccccccCCCCCHHhHHHHHHHHHccC-------CC---CCcccHHHHHhhcC--CCCHHHHHHHHHHHHHH
Q 002961 551 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKK-------PM---ADDVDYLAVASMTD--GMVGAELANIVEVAAIN 615 (862)
Q Consensus 551 LlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~-------~~---~~~~dl~~lA~~t~--G~s~adI~~lv~~A~~~ 615 (862)
|++ ||+.++.|++|+.+++..|+..++... .. .++..+..|+.... .+..++|.++++.+...
T Consensus 744 l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~ 818 (854)
T 1qvr_A 744 FLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELET 818 (854)
T ss_dssp HHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHH
T ss_pred HHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHH
Confidence 887 999999999999999999999887521 11 12233445555433 45667787777766543
No 37
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.56 E-value=8.6e-15 Score=157.96 Aligned_cols=203 Identities=26% Similarity=0.358 Sum_probs=138.4
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchh-hhcccch-hhHHHHHHHH----H-hcCCceeEhHHHHHh
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE-IYVGVGA-SRVRSLYQEA----K-DNAPSVVFIDELDAV 500 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~-~~~gq~~-~~l~~~f~~a----~-~~~p~iL~iDEid~l 500 (862)
.+.+++|+||||||||+++++++..++.+++.++++.+.. .|++... ..+..++... . ...+++++|||+|.+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 128 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhc
Confidence 4668999999999999999999999999999999988665 4555432 2244444421 1 123579999999998
Q ss_pred hhhccCcCCCCchhHHHHHHHHHHhhcccc--------CCCcEEEEEe----cCCCCCCCccccCCCCccccccCCCCCH
Q 002961 501 GRERGLIKGSGGQERDATLNQLLVCLDGFE--------GRGNVITIAS----TNRPDILDPALVRPGRFDRKIFIPKPGL 568 (862)
Q Consensus 501 ~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~--------~~~~vlvI~t----TN~~~~Ld~aLlrpgRfd~~I~~~~P~~ 568 (862)
...... .........+.+.|+..|++.. ...++++|++ ++.+..++++|++ ||+.+|.|++|+.
T Consensus 129 ~~~~~~--~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~ 204 (310)
T 1ofh_A 129 CKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSA 204 (310)
T ss_dssp SCCSSC--CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCH
T ss_pred Cccccc--cccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCH
Confidence 654321 1122222334677777777531 2346788888 4567889999998 9998899999999
Q ss_pred HhHHHHHHH----H-------HccCCC---CCcccHHHHHhhc-------CCCCHHHHHHHHHHHHHHHHHh-----CCc
Q 002961 569 IGRMEILKV----H-------ARKKPM---ADDVDYLAVASMT-------DGMVGAELANIVEVAAINMMRD-----GRT 622 (862)
Q Consensus 569 ~~R~~Il~~----~-------l~~~~~---~~~~dl~~lA~~t-------~G~s~adI~~lv~~A~~~A~~~-----~~~ 622 (862)
+++..|++. + +..... .++..+..++..+ .+.+.+.+.++++.+...+... +..
T Consensus 205 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~ 284 (310)
T 1ofh_A 205 ADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQT 284 (310)
T ss_dssp HHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCE
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCE
Confidence 999999983 1 111221 1233455566554 2457788999998876443322 221
Q ss_pred -ccCHHHHHHHHH
Q 002961 623 -EITTDDLLQAAQ 634 (862)
Q Consensus 623 -~It~edl~~Al~ 634 (862)
.|+.+++..++.
T Consensus 285 ~~i~~~~v~~~l~ 297 (310)
T 1ofh_A 285 VNIDAAYVADALG 297 (310)
T ss_dssp EEECHHHHHHHTC
T ss_pred EEEeeHHHHHHHH
Confidence 499999998875
No 38
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.54 E-value=1.9e-14 Score=153.55 Aligned_cols=191 Identities=22% Similarity=0.331 Sum_probs=131.2
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccc----hhhHHHHHHHHHhcCCceeEhHHHHHhh
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVG----ASRVRSLYQEAKDNAPSVVFIDELDAVG 501 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~----~~~l~~~f~~a~~~~p~iL~iDEid~l~ 501 (862)
...+.+++|+||+|||||+|+++|+..++.+++.+++++. +++.. ...+..+|..+....+++++|||+|.+.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~ 137 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLL 137 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHT
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhh
Confidence 4566789999999999999999999999999998877642 22222 2345778887777778999999999996
Q ss_pred hhccCcCCCCchhHHHHHHHHHHhhcccc-CCCcEEEEEecCCCCCCCc-cccCCCCccccccCCCCCH-HhHHHHHHHH
Q 002961 502 RERGLIKGSGGQERDATLNQLLVCLDGFE-GRGNVITIASTNRPDILDP-ALVRPGRFDRKIFIPKPGL-IGRMEILKVH 578 (862)
Q Consensus 502 ~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~-~~~~vlvI~tTN~~~~Ld~-aLlrpgRfd~~I~~~~P~~-~~R~~Il~~~ 578 (862)
+.... +.......++.|...++... ....+++|+|||.++.+++ .+.+ ||+..|.+|+++. ++...++..
T Consensus 138 ~~~~~----~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~- 210 (272)
T 1d2n_A 138 DYVPI----GPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL- 210 (272)
T ss_dssp TCBTT----TTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH-
T ss_pred ccCCC----ChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHHh-
Confidence 54321 12223445666666666654 3456889999999988887 5655 9998888876655 444444433
Q ss_pred HccCCCCCcccHHHHHhhcCCC----CHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 579 ARKKPMADDVDYLAVASMTDGM----VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 579 l~~~~~~~~~dl~~lA~~t~G~----s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
...+ .+.++..++..+.|+ +.+++.++++.|.. .......+++..++.
T Consensus 211 --~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~-----~~~~~~~~~~~~~l~ 262 (272)
T 1d2n_A 211 --LGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ-----MDPEYRVRKFLALLR 262 (272)
T ss_dssp --HTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT-----SCGGGHHHHHHHHHH
T ss_pred --cCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh-----hchHHHHHHHHHHHH
Confidence 2333 456688889988886 56667777765542 223345555555554
No 39
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.53 E-value=5.6e-14 Score=152.99 Aligned_cols=182 Identities=23% Similarity=0.272 Sum_probs=135.6
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHh--cCCceeEhHHHHHhhhhcc
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKD--NAPSVVFIDELDAVGRERG 505 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~--~~p~iL~iDEid~l~~~~~ 505 (862)
.+..++|+||+|||||+++++++..++.++..+++..+.. ...++..+.. ..++++||||++.+...
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~---------~~~l~~~l~~~~~~~~~l~lDEi~~l~~~-- 105 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK---------PGDLAAILANSLEEGDILFIDEIHRLSRQ-- 105 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---------HHHHHHHHTTTCCTTCEEEETTTTSCCHH--
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---------hHHHHHHHHHhccCCCEEEEECCcccccc--
Confidence 3467999999999999999999999998888887765321 1223333332 45789999999887533
Q ss_pred CcCCCCchhHHHHHHHHHHhhcccc----------------CCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHH
Q 002961 506 LIKGSGGQERDATLNQLLVCLDGFE----------------GRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLI 569 (862)
Q Consensus 506 ~~~~Sgge~~r~~l~~LL~~Ld~~~----------------~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~ 569 (862)
....|+..++... ...++++|++||.+..++++|.+ ||+.++.+++|+.+
T Consensus 106 ------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~ 171 (324)
T 1hqc_A 106 ------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPE 171 (324)
T ss_dssp ------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHH
T ss_pred ------------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHH
Confidence 3444555554321 11357899999999999999998 99889999999999
Q ss_pred hHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 002961 570 GRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 635 (862)
Q Consensus 570 ~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 635 (862)
++..++..++...... ++..+..++..+.| +++.+.++++.+...+...+...|+.+++..++..
T Consensus 172 e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 172 ELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA 237 (324)
T ss_dssp HHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 9999999988654332 33446777888765 56788899988876665566778999999888754
No 40
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.53 E-value=2.6e-14 Score=163.60 Aligned_cols=190 Identities=16% Similarity=0.213 Sum_probs=133.9
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc-----cCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhh
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRE 503 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l-----~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~ 503 (862)
+..++|+||||+|||||+++|++.+ +..++++++..+...+.+.........|.......+++|+|||++.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 4578999999999999999999987 67788888776544332221111111222222226789999999988642
Q ss_pred ccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCC---CCccccCCCCcc--ccccCCCCCHHhHHHHHHHH
Q 002961 504 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVH 578 (862)
Q Consensus 504 ~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~---Ld~aLlrpgRfd--~~I~~~~P~~~~R~~Il~~~ 578 (862)
. .....|+..++.+...+..+||++.+.+.. +++.|++ ||. .++.+++|+.++|..|++..
T Consensus 210 ~------------~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~ 275 (440)
T 2z4s_A 210 T------------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKM 275 (440)
T ss_dssp H------------HHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHH
T ss_pred h------------HHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHH
Confidence 1 133445555554444455666666665554 7889998 775 78999999999999999988
Q ss_pred HccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 579 ARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 579 l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
+....+. ++..+..++..+.| +.+++.++++.+...+...+. .||.+++.+++.
T Consensus 276 ~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~ 330 (440)
T 2z4s_A 276 LEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLK 330 (440)
T ss_dssp HHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTS
T ss_pred HHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 7643221 23336778888765 788999999999888776665 699999998875
No 41
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.49 E-value=2.2e-13 Score=151.10 Aligned_cols=198 Identities=19% Similarity=0.214 Sum_probs=137.6
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc---------cCceeeeecccchhhh---------c-------ccchhh-HHHH
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA---------GVNFFSISASQFVEIY---------V-------GVGASR-VRSL 480 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l---------~~~~~~i~~~~~~~~~---------~-------gq~~~~-l~~~ 480 (862)
..+..++|+||+|+|||++++.++..+ +..++++++......+ + +..... +..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 121 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERL 121 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 456679999999999999999999987 6778888876532210 0 111222 2344
Q ss_pred HHHHHhc-CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCC---CCCCccccCCCC
Q 002961 481 YQEAKDN-APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP---DILDPALVRPGR 556 (862)
Q Consensus 481 f~~a~~~-~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~---~~Ld~aLlrpgR 556 (862)
+..+... .|.+++|||++.+.... .....+..++..++......++.+|++||.+ +.+++.+.+ |
T Consensus 122 ~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r 190 (387)
T 2v1u_A 122 VKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKS--S 190 (387)
T ss_dssp HHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHT--T
T ss_pred HHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHh--c
Confidence 4444333 36799999999986431 0123566666655544324578899999887 678889988 8
Q ss_pred ccc-cccCCCCCHHhHHHHHHHHHcc--C-CCCCcccHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHhCCcccCHHHH
Q 002961 557 FDR-KIFIPKPGLIGRMEILKVHARK--K-PMADDVDYLAVASMTD---GMVGAELANIVEVAAINMMRDGRTEITTDDL 629 (862)
Q Consensus 557 fd~-~I~~~~P~~~~R~~Il~~~l~~--~-~~~~~~dl~~lA~~t~---G~s~adI~~lv~~A~~~A~~~~~~~It~edl 629 (862)
|.. .+.|++|+.++...|+..++.. . ...++..+..++..+. | .++.+.++++.|...+...+...|+.+++
T Consensus 191 ~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v 269 (387)
T 2v1u_A 191 LGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHG-DARRALDLLRVAGEIAERRREERVRREHV 269 (387)
T ss_dssp TTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHH
T ss_pred CCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHH
Confidence 875 8999999999999999988764 1 1223334566666665 5 56677899999988888878889999999
Q ss_pred HHHHHHH
Q 002961 630 LQAAQIE 636 (862)
Q Consensus 630 ~~Al~~~ 636 (862)
..++...
T Consensus 270 ~~a~~~~ 276 (387)
T 2v1u_A 270 YSARAEI 276 (387)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998743
No 42
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.48 E-value=1.8e-13 Score=141.44 Aligned_cols=181 Identities=16% Similarity=0.129 Sum_probs=124.3
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhcc---CceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhc
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAG---VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRER 504 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~---~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~ 504 (862)
.+..++|+||+|+|||||+++++..+. ..+.++++..+...+.. .+.. ...+.+++|||++.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~--~~~~~vliiDe~~~~~~~~ 120 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTA--------LLEG--LEQFDLICIDDVDAVAGHP 120 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG--------GGTT--GGGSSEEEEETGGGGTTCH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--------HHHh--ccCCCEEEEeccccccCCH
Confidence 467899999999999999999998764 56677777664432211 1111 1346799999999875321
Q ss_pred cCcCCCCchhHHHHHHHHHHhhccccCCCcE-EEEEecCCCC---CCCccccCCCCcc--ccccCCCCCHHhHHHHHHHH
Q 002961 505 GLIKGSGGQERDATLNQLLVCLDGFEGRGNV-ITIASTNRPD---ILDPALVRPGRFD--RKIFIPKPGLIGRMEILKVH 578 (862)
Q Consensus 505 ~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~v-lvI~tTN~~~---~Ld~aLlrpgRfd--~~I~~~~P~~~~R~~Il~~~ 578 (862)
. ....++..++.....+.+ +|+++++.+. .+++.+.+ ||. .++.+++|+.+++.+++..+
T Consensus 121 ---------~---~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~ 186 (242)
T 3bos_A 121 ---------L---WEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRR 186 (242)
T ss_dssp ---------H---HHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHH
T ss_pred ---------H---HHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHH
Confidence 0 133444444444333444 5555544444 45577887 775 79999999999999999998
Q ss_pred HccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 579 ARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 579 l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
+...... ++..+..++..+.| +.+++.++++.+...+...++ .||.+++.+++.
T Consensus 187 ~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~~~-~It~~~v~~~l~ 241 (242)
T 3bos_A 187 AAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVHQR-KLTIPFVKEMLR 241 (242)
T ss_dssp HHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHHT
T ss_pred HHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHhh
Confidence 8654332 33446677787765 788899999998877765554 699999998863
No 43
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.48 E-value=8.8e-14 Score=154.90 Aligned_cols=190 Identities=25% Similarity=0.338 Sum_probs=129.7
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhh-hcccc-hhhHHHHHHHH----HhcCCceeEhHHHHHhh
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGVG-ASRVRSLYQEA----KDNAPSVVFIDELDAVG 501 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~-~~gq~-~~~l~~~f~~a----~~~~p~iL~iDEid~l~ 501 (862)
.+.+++|+||||||||+++++|+..++.+++.++++.+... |+|.. ...+..++..+ ....++++||||+|.+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~ 129 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKIS 129 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhc
Confidence 45679999999999999999999999999999999876643 66654 33445565554 33457899999999997
Q ss_pred hhccCcCCCCchhHHHHHHHHHHhhcccc-------------------CCCcEEEEEecCCC----------CC------
Q 002961 502 RERGLIKGSGGQERDATLNQLLVCLDGFE-------------------GRGNVITIASTNRP----------DI------ 546 (862)
Q Consensus 502 ~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~-------------------~~~~vlvI~tTN~~----------~~------ 546 (862)
..+.....+.+...+.+++.|+..|++.. ...++++|+++|.. ..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf 209 (363)
T 3hws_A 130 RKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGF 209 (363)
T ss_dssp CCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC----
T ss_pred ccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCc
Confidence 66543332333444457888998888421 22345566665542 11
Q ss_pred -----------------------------CCccccCCCCccccccCCCCCHHhHHHHHHH----HH-------ccCCCC-
Q 002961 547 -----------------------------LDPALVRPGRFDRKIFIPKPGLIGRMEILKV----HA-------RKKPMA- 585 (862)
Q Consensus 547 -----------------------------Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~----~l-------~~~~~~- 585 (862)
+.|+|++ ||+.++.|++|+.+++.+|+.. .+ ......
T Consensus 210 ~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l 287 (363)
T 3hws_A 210 GATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDL 287 (363)
T ss_dssp --------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEE
T ss_pred cccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceE
Confidence 6788887 9999999999999999999885 22 111111
Q ss_pred --CcccHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHh
Q 002961 586 --DDVDYLAVAS--MTDGMVGAELANIVEVAAINMMRD 619 (862)
Q Consensus 586 --~~~dl~~lA~--~t~G~s~adI~~lv~~A~~~A~~~ 619 (862)
.+..+..|+. ....+..++|.++++.+...+..+
T Consensus 288 ~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 288 EFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp EECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred EECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 2233445554 333455688888888887766654
No 44
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.47 E-value=2.9e-13 Score=148.43 Aligned_cols=191 Identities=19% Similarity=0.220 Sum_probs=131.5
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCceeeeecccch--hhhcccchhh-HHHHHHHHHhcC---CceeEhHHHHHhhh
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV--EIYVGVGASR-VRSLYQEAKDNA---PSVVFIDELDAVGR 502 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~--~~~~gq~~~~-l~~~f~~a~~~~---p~iL~iDEid~l~~ 502 (862)
+.+++|+||||||||+|+++|+..++.++..+++.... ....+..... ....+. .... .++++|||++.+..
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~~ 123 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFE--VKKGPVFSNFILADEVNRSPA 123 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEE--EEECTTCSSEEEEETGGGSCH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceE--eccCcccccEEEEEccccCCH
Confidence 46899999999999999999999999888888764211 1111110000 000000 0011 36999999998754
Q ss_pred hccCcCCCCchhHHHHHHHHHHhhccc---------cCCCcEEEEEecCCCC-----CCCccccCCCCccccccCCCCCH
Q 002961 503 ERGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRPD-----ILDPALVRPGRFDRKIFIPKPGL 568 (862)
Q Consensus 503 ~~~~~~~Sgge~~r~~l~~LL~~Ld~~---------~~~~~vlvI~tTN~~~-----~Ld~aLlrpgRfd~~I~~~~P~~ 568 (862)
. .++.|+..|+.. ..+..+++|+|+|+.+ .+++++++ ||+.++.+++|+.
T Consensus 124 ~--------------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~ 187 (331)
T 2r44_A 124 K--------------VQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDK 187 (331)
T ss_dssp H--------------HHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCH
T ss_pred H--------------HHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCH
Confidence 3 556666666532 1234678888888654 38999999 9998899999999
Q ss_pred HhHHHHHHHHHccCCC-----------------------CCcccHHHHHhh-------------------cCCCCHHHHH
Q 002961 569 IGRMEILKVHARKKPM-----------------------ADDVDYLAVASM-------------------TDGMVGAELA 606 (862)
Q Consensus 569 ~~R~~Il~~~l~~~~~-----------------------~~~~dl~~lA~~-------------------t~G~s~adI~ 606 (862)
+++.+|++.++..... .++..+..++.. ..|.|++.+.
T Consensus 188 ~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~ 267 (331)
T 2r44_A 188 ESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAI 267 (331)
T ss_dssp HHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHH
T ss_pred HHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHH
Confidence 9999999988754211 011112223221 1256899999
Q ss_pred HHHHHHHHHHHHhCCcccCHHHHHHHHHHHh
Q 002961 607 NIVEVAAINMMRDGRTEITTDDLLQAAQIEE 637 (862)
Q Consensus 607 ~lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 637 (862)
.+++.|...|...++..|+.+|+.+++....
T Consensus 268 ~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl 298 (331)
T 2r44_A 268 NLNRVAKAMAFFNNRDYVLPEDIKEVAYDIL 298 (331)
T ss_dssp HHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 9999999899999999999999999987543
No 45
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.46 E-value=9.8e-14 Score=151.84 Aligned_cols=170 Identities=18% Similarity=0.220 Sum_probs=117.1
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhc
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRER 504 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~ 504 (862)
.+..++|+||||||||||+++|++.+ +.+++++++..+...+.+.........|.... ..+++++|||++.+....
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~ 114 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE 114 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh
Confidence 34679999999999999999999988 78889998877654433322111111222222 237899999999885421
Q ss_pred cCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCC---CCCccccCCCCcc--ccccCCCCCHHhHHHHHHHHH
Q 002961 505 GLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 505 ~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~---~Ld~aLlrpgRfd--~~I~~~~P~~~~R~~Il~~~l 579 (862)
. ....++..++.....+..+|+++++.+. .+++.|++ ||+ .++.+++ +.+++..|++.++
T Consensus 115 ---------~---~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~ 179 (324)
T 1l8q_A 115 ---------R---TQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKL 179 (324)
T ss_dssp ---------H---HHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHH
T ss_pred ---------H---HHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHH
Confidence 1 2334444444443445567777777766 68899998 875 6789999 9999999999988
Q ss_pred ccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 002961 580 RKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAIN 615 (862)
Q Consensus 580 ~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~ 615 (862)
....+. ++..+..++..+ | +.+++.++++.+...
T Consensus 180 ~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 180 KEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp HHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 754332 334467788888 4 677788888877644
No 46
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.46 E-value=1.7e-13 Score=167.08 Aligned_cols=163 Identities=23% Similarity=0.286 Sum_probs=116.2
Q ss_pred eEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccCc
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLI 507 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~ 507 (862)
.++|+||+|||||+++++|+..+ +.+++.++++.+...+... ...+...++...++++|||||+.+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~~~~---- 594 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKAHPD---- 594 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGSCHH----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEeCccccCHH----
Confidence 69999999999999999999987 6789999999877665443 123344555667789999999987554
Q ss_pred CCCCchhHHHHHHHHHHhhcccc---------CCCcEEEEEecCCCCC------------CCccccCCCCccccccCCCC
Q 002961 508 KGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPDI------------LDPALVRPGRFDRKIFIPKP 566 (862)
Q Consensus 508 ~~Sgge~~r~~l~~LL~~Ld~~~---------~~~~vlvI~tTN~~~~------------Ld~aLlrpgRfd~~I~~~~P 566 (862)
+++.|+..|+... ...++++|+|||.+.. ++|+|++ ||+.+|.|++|
T Consensus 595 ----------~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l 662 (758)
T 3pxi_A 595 ----------VFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSL 662 (758)
T ss_dssp ----------HHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--
T ss_pred ----------HHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCC
Confidence 6788888887522 2346799999997544 7888988 99999999999
Q ss_pred CHHhHHHHHHHHHccC-------CCC---CcccHHHHHhh--cCCCCHHHHHHHHHHHH
Q 002961 567 GLIGRMEILKVHARKK-------PMA---DDVDYLAVASM--TDGMVGAELANIVEVAA 613 (862)
Q Consensus 567 ~~~~R~~Il~~~l~~~-------~~~---~~~dl~~lA~~--t~G~s~adI~~lv~~A~ 613 (862)
+.+++..|+..++... ... ++..+..++.. ...+..+.|.++++.+.
T Consensus 663 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v 721 (758)
T 3pxi_A 663 EKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHV 721 (758)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHH
Confidence 9999999999877432 111 22234445442 23345567777776553
No 47
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.44 E-value=4.2e-14 Score=160.80 Aligned_cols=138 Identities=27% Similarity=0.295 Sum_probs=56.6
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchh-hhccc-chhhHHHHHHHHHhcCCceeEhHHHHHhhhhcc
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE-IYVGV-GASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 505 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~-~~~gq-~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~ 505 (862)
.+.+++|+|||||||||++++||+.++.+++.++++.+.. .|+|. ....++.+|+.+... +++||++.+...
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~----~~~De~d~~~~~-- 122 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKL----VRQQEIAKNRAR-- 122 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHH----HHHHHHHSCC----
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhc----chhhhhhhhhcc--
Confidence 4578999999999999999999999999999999988777 48886 566678888887653 468998776432
Q ss_pred CcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEe-cCCCCCCCccccCCCCccccccCCCCCHH-hHHHHHHH
Q 002961 506 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAS-TNRPDILDPALVRPGRFDRKIFIPKPGLI-GRMEILKV 577 (862)
Q Consensus 506 ~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~t-TN~~~~Ld~aLlrpgRfd~~I~~~~P~~~-~R~~Il~~ 577 (862)
..+...+.+++.|+..||++.+...+ +++ ||+++.||++|+|+||||+.|+++.|+.. .|.+|+..
T Consensus 123 ----~~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~ 190 (444)
T 1g41_A 123 ----AEDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAP 190 (444)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ----chhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcC
Confidence 22334456899999999998776554 444 99999999999999999999999999987 67887653
No 48
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.43 E-value=8.6e-13 Score=133.80 Aligned_cols=174 Identities=22% Similarity=0.209 Sum_probs=120.9
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc-----cCceeeeecccchhhhcccchhhHHHHHHHHHh------cCCceeEhHHHH
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGASRVRSLYQEAKD------NAPSVVFIDELD 498 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l-----~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~------~~p~iL~iDEid 498 (862)
..++|+||+|+|||++++.++..+ ...++.++++... ....+...+..... ..+.+++|||++
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~ 112 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER------GIDVVRHKIKEFARTAPIGGAPFKIIFLDEAD 112 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT------CHHHHHHHHHHHHTSCCSTTCSCEEEEEETGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccccc------ChHHHHHHHHHHhcccCCCccCceEEEEeChh
Confidence 359999999999999999999875 2345555544321 11122222222222 457899999999
Q ss_pred HhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHH
Q 002961 499 AVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH 578 (862)
Q Consensus 499 ~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~ 578 (862)
.+... ..+.|+..++.. ..++.+|++||.+..+++++.+ ||. .+.+++|+.++...++..+
T Consensus 113 ~l~~~--------------~~~~l~~~l~~~--~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~ 173 (226)
T 2chg_A 113 ALTAD--------------AQAALRRTMEMY--SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEI 173 (226)
T ss_dssp GSCHH--------------HHHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHH
T ss_pred hcCHH--------------HHHHHHHHHHhc--CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHH
Confidence 87543 345555556543 3467888889999999999998 887 8999999999999999988
Q ss_pred HccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 579 ARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 579 l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
+...... ++..+..++..+.| +++.+.++++.++..+ ..||.+|+.+++.
T Consensus 174 ~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 174 CEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC-----SCBCHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC-----ceecHHHHHHHhc
Confidence 7543322 33456667777765 5566667776665432 5899999999874
No 49
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.43 E-value=5.2e-13 Score=146.78 Aligned_cols=133 Identities=18% Similarity=0.225 Sum_probs=94.8
Q ss_pred CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccc----cC-------CCcEEEEEecCCCC-CCCccccCCC
Q 002961 488 APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF----EG-------RGNVITIASTNRPD-ILDPALVRPG 555 (862)
Q Consensus 488 ~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~----~~-------~~~vlvI~tTN~~~-~Ld~aLlrpg 555 (862)
.++++||||++.+... .++.|+..|+.- .. ..++++|+|||..+ .++++|++
T Consensus 144 ~~~vl~iDEi~~l~~~--------------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~-- 207 (350)
T 1g8p_A 144 NRGYLYIDECNLLEDH--------------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD-- 207 (350)
T ss_dssp TTEEEEETTGGGSCHH--------------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--
T ss_pred CCCEEEEeChhhCCHH--------------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--
Confidence 3679999999987543 455666655531 11 23689999999755 89999999
Q ss_pred CccccccCCCC-CHHhHHHHHHHHHc-------------------------------cCCCCCcccHHHHHhhcC---CC
Q 002961 556 RFDRKIFIPKP-GLIGRMEILKVHAR-------------------------------KKPMADDVDYLAVASMTD---GM 600 (862)
Q Consensus 556 Rfd~~I~~~~P-~~~~R~~Il~~~l~-------------------------------~~~~~~~~dl~~lA~~t~---G~ 600 (862)
||+.++.+++| +.+.+..|+..++. ...+ ++..+..++.... +.
T Consensus 208 R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-s~~~~~~l~~~~~~~~~~ 286 (350)
T 1g8p_A 208 RFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEA-PNTALYDCAALCIALGSD 286 (350)
T ss_dssp TCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBC-CHHHHHHHHHHHHHSSSC
T ss_pred hcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhCCC
Confidence 99988999999 67777788866321 1112 2222334443332 23
Q ss_pred CHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHh
Q 002961 601 VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 637 (862)
Q Consensus 601 s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 637 (862)
+.+.+.++++.|...|...++..|+.+|+..|+....
T Consensus 287 ~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l 323 (350)
T 1g8p_A 287 GLRGELTLLRSARALAALEGATAVGRDHLKRVATMAL 323 (350)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHH
Confidence 6799999999999889888988999999999988543
No 50
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.42 E-value=2.6e-12 Score=141.57 Aligned_cols=184 Identities=22% Similarity=0.303 Sum_probs=131.2
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccCc
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLI 507 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~ 507 (862)
.+..++|+||||+|||||+++|++.++.++...+...+. ....+..++.. ...++|+++||++.+...
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~------~~~~l~~~~~~--~~~~~v~~iDE~~~l~~~---- 117 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTS--LERGDVLFIDEIHRLNKA---- 117 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC------SHHHHHHHHHH--CCTTCEEEEETGGGCCHH----
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc------CHHHHHHHHHH--ccCCCEEEEcchhhcCHH----
Confidence 346799999999999999999999998766554432211 11122222222 234679999999887432
Q ss_pred CCCCchhHHHHHHHHHHhhcccc-------C---------CCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhH
Q 002961 508 KGSGGQERDATLNQLLVCLDGFE-------G---------RGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGR 571 (862)
Q Consensus 508 ~~Sgge~~r~~l~~LL~~Ld~~~-------~---------~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R 571 (862)
....++..++... + -..+.++++|+.+..+++.+++ ||...+.+++|+.+++
T Consensus 118 ----------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l 185 (334)
T 1in4_A 118 ----------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKEL 185 (334)
T ss_dssp ----------HHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHH
T ss_pred ----------HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHH
Confidence 2222333332211 0 1236778899999999999999 9988899999999999
Q ss_pred HHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHH
Q 002961 572 MEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 636 (862)
Q Consensus 572 ~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~ 636 (862)
.+|++.......+. ++..+..++..+.| +++.+.++++.+...|...+...||.+++.+++...
T Consensus 186 ~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 186 KEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 99999887654333 23346778888877 567888999999888888888889999999998753
No 51
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.42 E-value=2.6e-13 Score=155.53 Aligned_cols=176 Identities=24% Similarity=0.350 Sum_probs=126.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHH----hcCCceeEhHHHHHhhhhcc
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAK----DNAPSVVFIDELDAVGRERG 505 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~----~~~p~iL~iDEid~l~~~~~ 505 (862)
..++|+||||||||||+++|++.++.+++.+++... +...++.++..+. ...++++||||++.+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~-- 121 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS-- 121 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--
Confidence 579999999999999999999999999988876432 2233455555443 345789999999988543
Q ss_pred CcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEec--CCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCC
Q 002961 506 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST--NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP 583 (862)
Q Consensus 506 ~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tT--N~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~ 583 (862)
.++.|+..++. +.+++|++| |....++++|++ |+. ++.|++|+.+++..++...+....
T Consensus 122 ------------~q~~LL~~le~----~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~ 182 (447)
T 3pvs_A 122 ------------QQDAFLPHIED----GTITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKT 182 (447)
T ss_dssp ---------------CCHHHHHT----TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTT
T ss_pred ------------HHHHHHHHHhc----CceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHh
Confidence 34556666663 346677666 555689999999 776 778999999999999999987521
Q ss_pred -------C-CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh--CCcccCHHHHHHHHH
Q 002961 584 -------M-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD--GRTEITTDDLLQAAQ 634 (862)
Q Consensus 584 -------~-~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~--~~~~It~edl~~Al~ 634 (862)
+ .++..+..++..+.| +.+.+.++++.+...+... +...||.+++.+++.
T Consensus 183 ~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 183 RGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAG 242 (447)
T ss_dssp TSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHT
T ss_pred hhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHh
Confidence 1 133446677777665 5667888888887655322 446899999999875
No 52
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.41 E-value=2.2e-13 Score=147.44 Aligned_cols=171 Identities=20% Similarity=0.274 Sum_probs=117.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh-----hcccchh-----hHHHHHHHHHhcCCceeEhHH
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGAS-----RVRSLYQEAKDNAPSVVFIDE 496 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~-----~~gq~~~-----~l~~~f~~a~~~~p~iL~iDE 496 (862)
..++|+||||||||+++++|++.+ +.+++.++++.+... .+|.... ....+...+....+++++|||
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDE 127 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDA 127 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEET
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeC
Confidence 469999999999999999999987 456778877764332 2221110 002233444455568999999
Q ss_pred HHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc---------CCCcEEEEEecCC------------------------
Q 002961 497 LDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNR------------------------ 543 (862)
Q Consensus 497 id~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~---------~~~~vlvI~tTN~------------------------ 543 (862)
++.+... .++.|+..|+... ...++++|+|||.
T Consensus 128 i~~l~~~--------------~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~ 193 (311)
T 4fcw_A 128 IEKAHPD--------------VFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFK 193 (311)
T ss_dssp GGGSCHH--------------HHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHH
T ss_pred hhhcCHH--------------HHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHH
Confidence 9987543 6677777776432 1136789999998
Q ss_pred --CCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHccC-------CC---CCcccHHHHHhhcC--CCCHHHHHHHH
Q 002961 544 --PDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK-------PM---ADDVDYLAVASMTD--GMVGAELANIV 609 (862)
Q Consensus 544 --~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~-------~~---~~~~dl~~lA~~t~--G~s~adI~~lv 609 (862)
...++++|++ ||+.++.+++|+.+++..|++.++... .. ..+..+..++.... ..+.++|.+++
T Consensus 194 ~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i 271 (311)
T 4fcw_A 194 VLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVI 271 (311)
T ss_dssp HHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHH
T ss_pred HHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHH
Confidence 4468889988 999999999999999999999877542 11 12233455555443 45678888888
Q ss_pred HHHHHHH
Q 002961 610 EVAAINM 616 (862)
Q Consensus 610 ~~A~~~A 616 (862)
+.+...+
T Consensus 272 ~~~~~~~ 278 (311)
T 4fcw_A 272 QRELETP 278 (311)
T ss_dssp HHHTHHH
T ss_pred HHHHHHH
Confidence 8776543
No 53
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=2.7e-12 Score=142.03 Aligned_cols=196 Identities=21% Similarity=0.258 Sum_probs=135.1
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc------cCceeeeecccchhh------h----------cccchhh-HHHHHHH
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA------GVNFFSISASQFVEI------Y----------VGVGASR-VRSLYQE 483 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l------~~~~~~i~~~~~~~~------~----------~gq~~~~-l~~~f~~ 483 (862)
..+..++|+||+|+|||||++.+++.+ +..++++++...... . .+..... ...++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 122 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKA 122 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 445679999999999999999999987 677788876532211 0 0111122 3444444
Q ss_pred HHhcC-CceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCC---CCCCccccCCCCcc-
Q 002961 484 AKDNA-PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP---DILDPALVRPGRFD- 558 (862)
Q Consensus 484 a~~~~-p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~---~~Ld~aLlrpgRfd- 558 (862)
+.... |.+++|||++.+...... ..+..++..++.. ...++.+|++||.+ ..+++.+.+ ||.
T Consensus 123 l~~~~~~~vlilDE~~~l~~~~~~----------~~l~~l~~~~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~ 189 (386)
T 2qby_A 123 VRDYGSQVVIVLDEIDAFVKKYND----------DILYKLSRINSEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSE 189 (386)
T ss_dssp HHTCCSCEEEEEETHHHHHHSSCS----------THHHHHHHHHHSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTT
T ss_pred HhccCCeEEEEEcChhhhhccCcC----------HHHHHHhhchhhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCC
Confidence 44443 889999999998743210 1566676666654 34578888888876 467888887 665
Q ss_pred ccccCCCCCHHhHHHHHHHHHccC---CCCCcccHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHH
Q 002961 559 RKIFIPKPGLIGRMEILKVHARKK---PMADDVDYLAVASMTD---GMVGAELANIVEVAAINMMRDGRTEITTDDLLQA 632 (862)
Q Consensus 559 ~~I~~~~P~~~~R~~Il~~~l~~~---~~~~~~dl~~lA~~t~---G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~A 632 (862)
+.+.|++++.++..+++..++... ....+..+..++..+. | +++.+.++++.+...+...+...|+.+++..+
T Consensus 190 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a 268 (386)
T 2qby_A 190 EEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMA 268 (386)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHH
T ss_pred eeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHH
Confidence 489999999999999999877531 1122333455666655 5 55667789999988888788889999999999
Q ss_pred HHHH
Q 002961 633 AQIE 636 (862)
Q Consensus 633 l~~~ 636 (862)
+...
T Consensus 269 ~~~~ 272 (386)
T 2qby_A 269 KEEI 272 (386)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8743
No 54
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.39 E-value=1.8e-12 Score=144.09 Aligned_cols=188 Identities=20% Similarity=0.227 Sum_probs=129.6
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc-----------cCceeeeecccch-hh----------h-------cccchhh-
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA-----------GVNFFSISASQFV-EI----------Y-------VGVGASR- 476 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l-----------~~~~~~i~~~~~~-~~----------~-------~gq~~~~- 476 (862)
..+..++|+||+|+|||+|++.++..+ +.+++++++.... .. + .+.....
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 122 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEY 122 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHH
Confidence 345679999999999999999999987 7788888866532 11 0 0111112
Q ss_pred HHHHHHHHHhcCCceeEhHHHHHhhhhccCcCCCCchhHHHH-HHHHHHhhccccCCCcEEEEEecCCC---CCCCcccc
Q 002961 477 VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDAT-LNQLLVCLDGFEGRGNVITIASTNRP---DILDPALV 552 (862)
Q Consensus 477 l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~-l~~LL~~Ld~~~~~~~vlvI~tTN~~---~~Ld~aLl 552 (862)
+..++..+....+ +++|||++.+..... ... +..|+... .++.+|++||.+ +.+++.++
T Consensus 123 ~~~l~~~l~~~~~-vlilDEi~~l~~~~~----------~~~~l~~l~~~~------~~~~iI~~t~~~~~~~~l~~~l~ 185 (384)
T 2qby_B 123 IDKIKNGTRNIRA-IIYLDEVDTLVKRRG----------GDIVLYQLLRSD------ANISVIMISNDINVRDYMEPRVL 185 (384)
T ss_dssp HHHHHHHHSSSCE-EEEEETTHHHHHSTT----------SHHHHHHHHTSS------SCEEEEEECSSTTTTTTSCHHHH
T ss_pred HHHHHHHhccCCC-EEEEECHHHhccCCC----------CceeHHHHhcCC------cceEEEEEECCCchHhhhCHHHH
Confidence 3334443433333 999999999865311 013 44444332 578899999887 67888988
Q ss_pred CCCCccccccCCCCCHHhHHHHHHHHHccC---CCCCcccHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHhCCcccCH
Q 002961 553 RPGRFDRKIFIPKPGLIGRMEILKVHARKK---PMADDVDYLAVASMTD---GMVGAELANIVEVAAINMMRDGRTEITT 626 (862)
Q Consensus 553 rpgRfd~~I~~~~P~~~~R~~Il~~~l~~~---~~~~~~dl~~lA~~t~---G~s~adI~~lv~~A~~~A~~~~~~~It~ 626 (862)
+ ||...+.|++|+.++...|+..++... ...++..+..++..+. | .++.+.++++.|...|. +...|+.
T Consensus 186 s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G-~~r~a~~~l~~a~~~a~--~~~~i~~ 260 (384)
T 2qby_B 186 S--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHG-DARKAVNLLFRAAQLAS--GGGIIRK 260 (384)
T ss_dssp H--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTT--SSSCCCH
T ss_pred h--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhc--CCCccCH
Confidence 8 887799999999999999999987631 1223334566666665 4 45566788888876665 6678999
Q ss_pred HHHHHHHHHH
Q 002961 627 DDLLQAAQIE 636 (862)
Q Consensus 627 edl~~Al~~~ 636 (862)
+++..++...
T Consensus 261 ~~v~~~~~~~ 270 (384)
T 2qby_B 261 EHVDKAIVDY 270 (384)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998743
No 55
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.39 E-value=1.7e-12 Score=133.03 Aligned_cols=181 Identities=19% Similarity=0.244 Sum_probs=122.2
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCceeee--ecc--------------cchhhhcc--cchhhHHHHHHHHH----h
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI--SAS--------------QFVEIYVG--VGASRVRSLYQEAK----D 486 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i--~~~--------------~~~~~~~g--q~~~~l~~~f~~a~----~ 486 (862)
+..++|+||+|+|||||++.++..+....... .+. .+...... .....+..++..+. .
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 124 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhc
Confidence 34689999999999999999998764322111 000 00000000 11122334443332 1
Q ss_pred cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCC
Q 002961 487 NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKP 566 (862)
Q Consensus 487 ~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P 566 (862)
..+.+++|||++.+... .++.|+..++.. ..++.+|++||.+..+++.+++ |+ ..+.+++|
T Consensus 125 ~~~~vlviDe~~~l~~~--------------~~~~l~~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l 185 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRH--------------SFNALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKAL 185 (250)
T ss_dssp SSSEEEEEETGGGSCHH--------------HHHHHHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCC
T ss_pred CCceEEEEECcccccHH--------------HHHHHHHHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCC
Confidence 23679999999987432 556667666643 3468888899988889999988 65 58999999
Q ss_pred CHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 002961 567 GLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 633 (862)
Q Consensus 567 ~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al 633 (862)
+.++..+++..++...... ++..+..++..+.| +++.+.++++.+.. .+...||.+++.+++
T Consensus 186 ~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~~~~~~~~~----~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 186 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAIA----SGDGQVSTQAVSAML 248 (250)
T ss_dssp CHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHT----TTTSSBCHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHh----ccCceecHHHHHHHh
Confidence 9999999999888654322 33456778888877 78888888887753 334579999998875
No 56
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.37 E-value=4.8e-12 Score=140.68 Aligned_cols=189 Identities=15% Similarity=0.168 Sum_probs=134.3
Q ss_pred eEEEECCCCCchhHHHHHHHhhc----cCceeeeecccchhh---------hcc-------cchhhH-HHHHHHHHh-cC
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEA----GVNFFSISASQFVEI---------YVG-------VGASRV-RSLYQEAKD-NA 488 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l----~~~~~~i~~~~~~~~---------~~g-------q~~~~l-~~~f~~a~~-~~ 488 (862)
.++|+||+|+|||||++.+++.+ +..++++++...... .++ .....+ ..+...+.. ..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 125 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 79999999999999999999987 456777776543211 011 111111 222222222 34
Q ss_pred CceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccC--CCcEEEEEecCCC---CCCCccccCCCCccc-ccc
Q 002961 489 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEG--RGNVITIASTNRP---DILDPALVRPGRFDR-KIF 562 (862)
Q Consensus 489 p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~--~~~vlvI~tTN~~---~~Ld~aLlrpgRfd~-~I~ 562 (862)
|.+++|||++.+... .+..|+..++.... ..++.+|++||.+ +.+++.+.+ ||.. .+.
T Consensus 126 ~~vlilDE~~~l~~~--------------~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~ 189 (389)
T 1fnn_A 126 YMFLVLDDAFNLAPD--------------ILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIR 189 (389)
T ss_dssp CEEEEEETGGGSCHH--------------HHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEE
T ss_pred eEEEEEECccccchH--------------HHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEE
Confidence 779999999987321 56667666665432 2478888988887 667888877 7765 799
Q ss_pred CCCCCHHhHHHHHHHHHcc---CCCCCcccHHHHHhhc---------CCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHH
Q 002961 563 IPKPGLIGRMEILKVHARK---KPMADDVDYLAVASMT---------DGMVGAELANIVEVAAINMMRDGRTEITTDDLL 630 (862)
Q Consensus 563 ~~~P~~~~R~~Il~~~l~~---~~~~~~~dl~~lA~~t---------~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~ 630 (862)
|++++.++...++...+.. ....++..+..++..+ .| .++.+.++++.|...+..++...|+.+++.
T Consensus 190 ~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~ 268 (389)
T 1fnn_A 190 FSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRG-DARLAIDILYRSAYAAQQNGRKHIAPEDVR 268 (389)
T ss_dssp CCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCC-cHHHHHHHHHHHHHHHHHhCCCCcCHHHHH
Confidence 9999999999999988754 1223344566777777 44 567788999999888888888899999999
Q ss_pred HHHHHH
Q 002961 631 QAAQIE 636 (862)
Q Consensus 631 ~Al~~~ 636 (862)
.++...
T Consensus 269 ~~~~~~ 274 (389)
T 1fnn_A 269 KSSKEV 274 (389)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 57
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.35 E-value=6.8e-13 Score=145.05 Aligned_cols=138 Identities=9% Similarity=0.076 Sum_probs=98.2
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc----------cCceeeeecccchhh----------hcc------cchhhHHHH
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFVEI----------YVG------VGASRVRSL 480 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l----------~~~~~~i~~~~~~~~----------~~g------q~~~~l~~~ 480 (862)
..|.+++|+||||||||++++.++.++ ...+++++|..+.+. +.| .....+..+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 456789999999999999999999987 245677777654332 111 123345666
Q ss_pred HHHH--HhcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCC----CCccccCC
Q 002961 481 YQEA--KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI----LDPALVRP 554 (862)
Q Consensus 481 f~~a--~~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~----Ld~aLlrp 554 (862)
|..+ ....+.|+++||+|.+... ..+..++.... ...++++||+++|..+. +++.+.+
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~~q-------------~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S- 186 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLLSE-------------KILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL- 186 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSCCT-------------HHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH-
T ss_pred HHHhhhccCCceEEEEecHHHhhcc-------------hHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhhc-
Confidence 6654 2345789999999998621 15555554322 24567899999998765 4556666
Q ss_pred CCcc-ccccCCCCCHHhHHHHHHHHHcc
Q 002961 555 GRFD-RKIFIPKPGLIGRMEILKVHARK 581 (862)
Q Consensus 555 gRfd-~~I~~~~P~~~~R~~Il~~~l~~ 581 (862)
||. .+|.|++|+.++...|++..+..
T Consensus 187 -R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 187 -KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp -HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred -cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 786 58999999999999999988865
No 58
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.34 E-value=2.8e-12 Score=143.38 Aligned_cols=204 Identities=23% Similarity=0.288 Sum_probs=123.5
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccch-hhhcccch-hhHHHHHHHH----HhcCCceeEhHHHHHhh
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV-EIYVGVGA-SRVRSLYQEA----KDNAPSVVFIDELDAVG 501 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~-~~~~gq~~-~~l~~~f~~a----~~~~p~iL~iDEid~l~ 501 (862)
.+.+++|+||||||||+++++|+..++.+++.+++..+. ..|.|... ..+..++... ....++++||||++.+.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~ 150 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKIS 150 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHh
Confidence 455799999999999999999999999999999887754 23555432 2234444332 23357899999999987
Q ss_pred hhccCcCCCCchhHHHHHHHHHHhhcccc-------------------CCCcEEEEEecCCC------------------
Q 002961 502 RERGLIKGSGGQERDATLNQLLVCLDGFE-------------------GRGNVITIASTNRP------------------ 544 (862)
Q Consensus 502 ~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~-------------------~~~~vlvI~tTN~~------------------ 544 (862)
..+.......+......++.|+..|++.. ...++++|++||..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~ 230 (376)
T 1um8_A 151 RLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFT 230 (376)
T ss_dssp -------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCC
T ss_pred hhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCC
Confidence 65321111111111236677777777431 12556788887621
Q ss_pred -----------------------CCCCccccCCCCccccccCCCCCHHhHHHHHHH----HHc-------cCC--C-CCc
Q 002961 545 -----------------------DILDPALVRPGRFDRKIFIPKPGLIGRMEILKV----HAR-------KKP--M-ADD 587 (862)
Q Consensus 545 -----------------------~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~----~l~-------~~~--~-~~~ 587 (862)
..+.|+|++ ||+.++.|++++.++...|+.. ++. ... + .++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (376)
T 1um8_A 231 QEKMSKKEQEAILHLVQTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEE 308 (376)
T ss_dssp CSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECH
T ss_pred chhhhccchhHHHhhcCHHHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECH
Confidence 124566777 8988999999999999998862 111 111 1 122
Q ss_pred ccHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHhCC------cccCHHHHHHHH
Q 002961 588 VDYLAVASMTD--GMVGAELANIVEVAAINMMRDGR------TEITTDDLLQAA 633 (862)
Q Consensus 588 ~dl~~lA~~t~--G~s~adI~~lv~~A~~~A~~~~~------~~It~edl~~Al 633 (862)
..+..++.... ....+.+.++++.+...+..+.. ..||.+++..+.
T Consensus 309 ~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 309 EAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSS
T ss_pred HHHHHHHHHhcccccCcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCC
Confidence 33455555432 24578899998888776665422 258888886643
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.33 E-value=4.3e-12 Score=154.66 Aligned_cols=199 Identities=23% Similarity=0.329 Sum_probs=137.9
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhc----------cCceeeeecccch--hhhcccchhhHHHHHHHHHhcCCceeE
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFV--EIYVGVGASRVRSLYQEAKDNAPSVVF 493 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l----------~~~~~~i~~~~~~--~~~~gq~~~~l~~~f~~a~~~~p~iL~ 493 (862)
...+.+++|+||+|||||+++++|+..+ +..++.++++.+. ..|.|.....+..++..+....++++|
T Consensus 204 ~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~ 283 (758)
T 1r6b_X 204 RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILF 283 (758)
T ss_dssp SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEE
T ss_pred ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEE
Confidence 3466789999999999999999999876 4455666665544 235666666778888888777789999
Q ss_pred hHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCC-----CCCccccCCCCccccccCCCCCH
Q 002961 494 IDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD-----ILDPALVRPGRFDRKIFIPKPGL 568 (862)
Q Consensus 494 iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~-----~Ld~aLlrpgRfd~~I~~~~P~~ 568 (862)
|||++.+.+.... +++. ....+.|. .+...+.+.+|++||.++ .+|++|.+ ||+ .+.|+.|+.
T Consensus 284 IDEi~~l~~~~~~---~~~~--~~~~~~L~----~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~ 351 (758)
T 1r6b_X 284 IDEIHTIIGAGAA---SGGQ--VDAANLIK----PLLSSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSI 351 (758)
T ss_dssp ETTTTTTTTSCCS---SSCH--HHHHHHHS----SCSSSCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCH
T ss_pred EechHHHhhcCCC---Ccch--HHHHHHHH----HHHhCCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCH
Confidence 9999998654321 1111 12233332 333456788899988643 57899999 998 799999999
Q ss_pred HhHHHHHHHHHcc----CCC-CCcccHHHHHhhc-----CCCCHHHHHHHHHHHHHHHHH----hCCcccCHHHHHHHHH
Q 002961 569 IGRMEILKVHARK----KPM-ADDVDYLAVASMT-----DGMVGAELANIVEVAAINMMR----DGRTEITTDDLLQAAQ 634 (862)
Q Consensus 569 ~~R~~Il~~~l~~----~~~-~~~~dl~~lA~~t-----~G~s~adI~~lv~~A~~~A~~----~~~~~It~edl~~Al~ 634 (862)
+++.+|++.++.. ..+ ..+..+..++..+ ..+.+..+..++++|+..+.. .+...|+.+|+..++.
T Consensus 352 ~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~ 431 (758)
T 1r6b_X 352 EETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVA 431 (758)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHH
Confidence 9999999877643 111 1233344455443 335677888999988766554 2456799999999987
Q ss_pred HH
Q 002961 635 IE 636 (862)
Q Consensus 635 ~~ 636 (862)
..
T Consensus 432 ~~ 433 (758)
T 1r6b_X 432 RI 433 (758)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 60
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.32 E-value=9.6e-12 Score=136.69 Aligned_cols=179 Identities=18% Similarity=0.186 Sum_probs=123.2
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccC------ceeeeecccchhhhcccchhhHHHHHHHHHh----------------c
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGV------NFFSISASQFVEIYVGVGASRVRSLYQEAKD----------------N 487 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~------~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~----------------~ 487 (862)
.+++|+||||+||||+++++++.+.. .+..+++++... ...+...+..... .
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCP 132 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCC
Confidence 34999999999999999999998642 455565544211 1112111111111 2
Q ss_pred CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCC
Q 002961 488 APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPG 567 (862)
Q Consensus 488 ~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~ 567 (862)
.+.++++||++.+... ..+.|+..|+... ....+|.+||.+..+++++++ |+. .+.|++|+
T Consensus 133 ~~~vliiDE~~~l~~~--------------~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~ 193 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD--------------AQSALRRTMETYS--GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALD 193 (353)
T ss_dssp SCEEEEETTGGGSCHH--------------HHHHHHHHHHHTT--TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCC
T ss_pred CceEEEEECCCccCHH--------------HHHHHHHHHHhcC--CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCC
Confidence 3459999999988543 4566777776543 345677788999999999998 776 88999999
Q ss_pred HHhHHHHHHHHHccCCC-CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCc-ccCHHHHHHHHH
Q 002961 568 LIGRMEILKVHARKKPM-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRT-EITTDDLLQAAQ 634 (862)
Q Consensus 568 ~~~R~~Il~~~l~~~~~-~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~-~It~edl~~Al~ 634 (862)
.++...++...+....+ .++..+..++..+.|. .+.+.++++.+...+...+.. .||.+++..++.
T Consensus 194 ~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 194 ASNAIDRLRFISEQENVKCDDGVLERILDISAGD-LRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC-HHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 99999999988765433 2344567788888764 555667777766555444433 799999988764
No 61
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.30 E-value=4e-12 Score=138.79 Aligned_cols=175 Identities=21% Similarity=0.253 Sum_probs=116.0
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhc-----CCceeEhHHHHHhh
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDN-----APSVVFIDELDAVG 501 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~-----~p~iL~iDEid~l~ 501 (862)
..+..++++||+|+|||+++++++..++.++++++++... ...++..+...... .+.+++|||+|.+.
T Consensus 46 ~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 46 KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSG 118 (324)
T ss_dssp CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGG
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccC
Confidence 3445678889999999999999999999999999876522 23344444443332 46799999999885
Q ss_pred -hhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHc
Q 002961 502 -RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR 580 (862)
Q Consensus 502 -~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~ 580 (862)
.. ..+.|+..++... .++.+|++||.+..+++++++ ||. ++.|++|+.+++..|+...+.
T Consensus 119 ~~~--------------~~~~L~~~le~~~--~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~ 179 (324)
T 3u61_B 119 LAE--------------SQRHLRSFMEAYS--SNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIR 179 (324)
T ss_dssp GHH--------------HHHHHHHHHHHHG--GGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred cHH--------------HHHHHHHHHHhCC--CCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHH
Confidence 32 4556666666543 457888899999999999999 885 799999999998776654432
Q ss_pred -------cCCC-CCc-ccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 581 -------KKPM-ADD-VDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 581 -------~~~~-~~~-~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
...+ .++ ..+..++..+.|..+. +.+.++.++ ....||.+++..++.
T Consensus 180 ~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~-a~~~L~~~~------~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 180 RLTEICKHEGIAIADMKVVAALVKKNFPDFRK-TIGELDSYS------SKGVLDAGILSLVTN 235 (324)
T ss_dssp HHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTH-HHHHHHHHG------GGTCBCC--------
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHH-HHHHHHHHh------ccCCCCHHHHHHHhC
Confidence 1122 223 4567788887765444 445555443 233588888887654
No 62
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.30 E-value=1.8e-12 Score=153.55 Aligned_cols=190 Identities=17% Similarity=0.178 Sum_probs=126.1
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhccCceeeee----cccchhhh-----cccchhhHHHHHHHHHhcCCceeEhHH
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS----ASQFVEIY-----VGVGASRVRSLYQEAKDNAPSVVFIDE 496 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~----~~~~~~~~-----~gq~~~~l~~~f~~a~~~~p~iL~iDE 496 (862)
++...+++|+||||||||+|+++|+..++...+... +..+.... .+.... ....+.. ...++++|||
T Consensus 324 ~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~-~~G~l~~---A~~gil~IDE 399 (595)
T 3f9v_A 324 IRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYL-EAGALVL---ADGGIAVIDE 399 (595)
T ss_dssp ECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSE-EECHHHH---HSSSEECCTT
T ss_pred cCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccc-cCCeeEe---cCCCcEEeeh
Confidence 344557999999999999999999998865544321 11111110 010000 0111111 2347999999
Q ss_pred HHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc-----------CCCcEEEEEecCCCC-------------CCCcccc
Q 002961 497 LDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-------------ILDPALV 552 (862)
Q Consensus 497 id~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~-----------~~~~vlvI~tTN~~~-------------~Ld~aLl 552 (862)
++.+... ..+.|+..|+.-. -+.++.||+|||+.. .++++|+
T Consensus 400 id~l~~~--------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl 465 (595)
T 3f9v_A 400 IDKMRDE--------------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTIL 465 (595)
T ss_dssp TTCCCSH--------------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSG
T ss_pred hhhCCHh--------------HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHH
Confidence 9987543 5566777776421 124678999999886 8999999
Q ss_pred CCCCcccc-ccCCCCCHHhHHHHHHHHHccCCC--------------------------CCcccHHHHHhh---------
Q 002961 553 RPGRFDRK-IFIPKPGLIGRMEILKVHARKKPM--------------------------ADDVDYLAVASM--------- 596 (862)
Q Consensus 553 rpgRfd~~-I~~~~P~~~~R~~Il~~~l~~~~~--------------------------~~~~dl~~lA~~--------- 596 (862)
+ |||.. +..+.|+.+ ...|.++.+..... ..+.....+...
T Consensus 466 ~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~ 542 (595)
T 3f9v_A 466 S--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSS 542 (595)
T ss_dssp G--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCC
T ss_pred h--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 9 99854 455567767 77887776653220 011112233332
Q ss_pred -----cCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHH
Q 002961 597 -----TDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 636 (862)
Q Consensus 597 -----t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~ 636 (862)
..+.|++.+.++++.|...|..+++..|+.+|+.+|+...
T Consensus 543 ~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 543 ETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp BCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred cCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 3478999999999999999999999999999999998743
No 63
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.29 E-value=7e-12 Score=144.56 Aligned_cols=180 Identities=23% Similarity=0.332 Sum_probs=118.3
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc----------cCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHH
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDE 496 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l----------~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDE 496 (862)
..+.+++|+||||||||+++++|+..+ +.+++.++++ ..|.|.....+..+|..+....+.++|||
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD- 274 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID- 274 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC-
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-
Confidence 455679999999999999999999986 6667777766 44666666778899999988888999999
Q ss_pred HHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCC-----CCCccccCCCCccccccCCCCCHHhH
Q 002961 497 LDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGR 571 (862)
Q Consensus 497 id~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~-----~Ld~aLlrpgRfd~~I~~~~P~~~~R 571 (862)
+ .. ...+.|+..|+ .+.+.+|++||..+ .+|+++.+ ||. .|.|+.|+.+++
T Consensus 275 ----~-~~------------~a~~~L~~~L~----~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~ 330 (468)
T 3pxg_A 275 ----A-AI------------DASNILKPSLA----RGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDES 330 (468)
T ss_dssp ----C---------------------CCCTT----SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHH
T ss_pred ----C-ch------------hHHHHHHHhhc----CCCEEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHH
Confidence 1 10 03344554443 45789999999887 68999999 998 599999999999
Q ss_pred HHHHHHHHccC----CC-CCcccHHHHHhhcCC-----CCHHHHHHHHHHHHHHHHHhCC-cccCHHHHHHHHH
Q 002961 572 MEILKVHARKK----PM-ADDVDYLAVASMTDG-----MVGAELANIVEVAAINMMRDGR-TEITTDDLLQAAQ 634 (862)
Q Consensus 572 ~~Il~~~l~~~----~~-~~~~dl~~lA~~t~G-----~s~adI~~lv~~A~~~A~~~~~-~~It~edl~~Al~ 634 (862)
..|++.++... .+ ..+..+..++..+.+ +.+.....++..|+..+..... ......++...+.
T Consensus 331 ~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~ 404 (468)
T 3pxg_A 331 IQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLD 404 (468)
T ss_dssp HHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 99999877542 11 123334445544333 4455777888887765554433 2334444444443
No 64
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.27 E-value=3.7e-12 Score=155.20 Aligned_cols=168 Identities=20% Similarity=0.313 Sum_probs=118.9
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhh-----hcccchhhH-----HHHHHHHHhcCCceeEhHHHHH
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-----YVGVGASRV-----RSLYQEAKDNAPSVVFIDELDA 499 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~-----~~gq~~~~l-----~~~f~~a~~~~p~iL~iDEid~ 499 (862)
..++|+||+|||||+++++|+..++.+++.++++++... .+|.....+ ..+...++..+++++||||++.
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~ 568 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEK 568 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGG
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccc
Confidence 369999999999999999999999999999999886543 222211111 2345556667788999999998
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhcccc---------CCCcEEEEEecCCCC-------------------------
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPD------------------------- 545 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~---------~~~~vlvI~tTN~~~------------------------- 545 (862)
+... +++.|+..|+... ...+++||+|||...
T Consensus 569 ~~~~--------------~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 634 (758)
T 1r6b_X 569 AHPD--------------VFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKK 634 (758)
T ss_dssp SCHH--------------HHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHH
T ss_pred cCHH--------------HHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHH
Confidence 7544 7788888887421 114688999999754
Q ss_pred CCCccccCCCCccccccCCCCCHHhHHHHHHHHHccC-------CC---CCcccHHHHHhh--cCCCCHHHHHHHHHHHH
Q 002961 546 ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK-------PM---ADDVDYLAVASM--TDGMVGAELANIVEVAA 613 (862)
Q Consensus 546 ~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~-------~~---~~~~dl~~lA~~--t~G~s~adI~~lv~~A~ 613 (862)
.++|+|++ ||+.+|.|++|+.+++..|+..++... .+ .++..+..++.. ...+..+.+.++++.+.
T Consensus 635 ~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~ 712 (758)
T 1r6b_X 635 IFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNL 712 (758)
T ss_dssp HSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHH
T ss_pred hcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHH
Confidence 57888888 999999999999999999999887532 10 112223344432 22344666766666554
No 65
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.26 E-value=2.9e-12 Score=148.46 Aligned_cols=187 Identities=18% Similarity=0.230 Sum_probs=116.9
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccC--ceeeeeccc-chhhhcccch-hhH--HHHHHHHHhc---CCceeEhHHH
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISASQ-FVEIYVGVGA-SRV--RSLYQEAKDN---APSVVFIDEL 497 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~--~~~~i~~~~-~~~~~~gq~~-~~l--~~~f~~a~~~---~p~iL~iDEi 497 (862)
..+.+++|+||||||||+|+++|+..++. ++..+.+.- .....+|... ... ...|..+... .++|+|||||
T Consensus 39 ~~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI 118 (500)
T 3nbx_X 39 LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEI 118 (500)
T ss_dssp HHTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC----------CBCCTTSGGGCSEEEEESG
T ss_pred hcCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhccCCCcceeeeHHhH
Confidence 34568999999999999999999998743 333333321 0111222110 000 1111111111 3678999999
Q ss_pred HHhhhhccCcCCCCchhHHHHHHHHHHhhcccc--------CCCcEEEEEecCCCCC---CCccccCCCCccccccCCCC
Q 002961 498 DAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--------GRGNVITIASTNRPDI---LDPALVRPGRFDRKIFIPKP 566 (862)
Q Consensus 498 d~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~--------~~~~vlvI~tTN~~~~---Ld~aLlrpgRfd~~I~~~~P 566 (862)
+.+... ..+.|+..|+... .....++|+|||.+.. +.+++++ ||...+.+++|
T Consensus 119 ~r~~~~--------------~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p 182 (500)
T 3nbx_X 119 WKAGPA--------------ILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKV 182 (500)
T ss_dssp GGCCHH--------------HHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSC
T ss_pred hhhcHH--------------HHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH--HHHHHHHHHHh
Confidence 876433 6677777775311 1112246777775322 3458888 99999999999
Q ss_pred CH-HhHHHHHHHHHcc-------------------------CCCCCcccHHHHHhh---------cCCCCHHHHHHHHHH
Q 002961 567 GL-IGRMEILKVHARK-------------------------KPMADDVDYLAVASM---------TDGMVGAELANIVEV 611 (862)
Q Consensus 567 ~~-~~R~~Il~~~l~~-------------------------~~~~~~~dl~~lA~~---------t~G~s~adI~~lv~~ 611 (862)
+. +++..|+..+... ..+++ .....++.. ..|.|++.+..+++.
T Consensus 183 ~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d-~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~ 261 (500)
T 3nbx_X 183 QDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPD-HVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRL 261 (500)
T ss_dssp CCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCH-HHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHH
T ss_pred hhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCch-HHHHHHHHHHHHhhcCCCCCccchhHHHHHHHH
Confidence 87 7788888765421 11111 112223222 357899999999999
Q ss_pred HHHHHHHhCCcccCHHHHH
Q 002961 612 AAINMMRDGRTEITTDDLL 630 (862)
Q Consensus 612 A~~~A~~~~~~~It~edl~ 630 (862)
|...|...|+..|+.+|+.
T Consensus 262 A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 262 LQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHTTCSBCCGGGGG
T ss_pred HHHHHhhcCCccccchHHH
Confidence 9999999999999999998
No 66
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.24 E-value=8.3e-13 Score=130.76 Aligned_cols=136 Identities=28% Similarity=0.475 Sum_probs=91.3
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc----------cCceeeeecccchh--hhcccchhhHHHHHHHHHh-cCCceeE
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFVE--IYVGVGASRVRSLYQEAKD-NAPSVVF 493 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l----------~~~~~~i~~~~~~~--~~~gq~~~~l~~~f~~a~~-~~p~iL~ 493 (862)
..+..++|+||+|+|||++++.++..+ +.+++.+++..+.. .+.+.....+..++..+.. ..+.+++
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 120 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILF 120 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEE
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEE
Confidence 445679999999999999999999986 56667777655432 2233333345566665543 4577999
Q ss_pred hHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCC-----CCCccccCCCCccccccCCCCCH
Q 002961 494 IDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD-----ILDPALVRPGRFDRKIFIPKPGL 568 (862)
Q Consensus 494 iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~-----~Ld~aLlrpgRfd~~I~~~~P~~ 568 (862)
|||++.+...... .+... ..+.+...++ ..++.+|++||.++ .+++++++ ||+ .+.+++|+.
T Consensus 121 iDe~~~l~~~~~~---~~~~~---~~~~l~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~ 187 (195)
T 1jbk_A 121 IDELHTMVGAGKA---DGAMD---AGNMLKPALA----RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSV 187 (195)
T ss_dssp EETGGGGTT---------CCC---CHHHHHHHHH----TTSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCH
T ss_pred EeCHHHHhccCcc---cchHH---HHHHHHHhhc----cCCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCH
Confidence 9999998643211 01111 1222222222 34677888888776 68999999 998 699999999
Q ss_pred HhHHHHH
Q 002961 569 IGRMEIL 575 (862)
Q Consensus 569 ~~R~~Il 575 (862)
+++.+|+
T Consensus 188 ~~~~~il 194 (195)
T 1jbk_A 188 EDTIAIL 194 (195)
T ss_dssp HHHHTTC
T ss_pred HHHHHHh
Confidence 9998875
No 67
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.23 E-value=3.7e-11 Score=129.79 Aligned_cols=172 Identities=22% Similarity=0.203 Sum_probs=119.3
Q ss_pred eEEEECCCCCchhHHHHHHHhhc-----cCceeeeecccchhhhcccchhhHHHHHHHHH------hcCCceeEhHHHHH
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGASRVRSLYQEAK------DNAPSVVFIDELDA 499 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l-----~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~------~~~p~iL~iDEid~ 499 (862)
+++|+||+|+|||+++++++..+ ..+++.++++.... ...+...+.... ...+.+++|||+|.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 113 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADA 113 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGG
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCc
Confidence 49999999999999999999876 33456666554211 111222222222 13467999999998
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHH
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l 579 (862)
+... ..+.|+..++.. ..++.+|++||.+..+++++.+ |+. .+.|++|+.+++..++...+
T Consensus 114 l~~~--------------~~~~L~~~le~~--~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~ 174 (319)
T 2chq_A 114 LTAD--------------AQAALRRTMEMY--SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEIC 174 (319)
T ss_dssp SCHH--------------HHHTTGGGTSSS--SSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHH
T ss_pred CCHH--------------HHHHHHHHHHhc--CCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHH
Confidence 7543 456677777653 3467888889999999999998 765 89999999999999999888
Q ss_pred ccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 002961 580 RKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 633 (862)
Q Consensus 580 ~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al 633 (862)
...... ++..+..++..+.| +.+.+.++++.+.. ....||.+++..++
T Consensus 175 ~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~-----~~~~i~~~~v~~~~ 223 (319)
T 2chq_A 175 EKEGVKITEDGLEALIYISGG-DFRKAINALQGAAA-----IGEVVDADTIYQIT 223 (319)
T ss_dssp HTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHH-----SSSCBCHHHHHHHT
T ss_pred HHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH-----cCCCCCHHHHHHHH
Confidence 755433 33446667777665 44555566655432 13469999988764
No 68
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.21 E-value=2e-11 Score=150.68 Aligned_cols=180 Identities=27% Similarity=0.406 Sum_probs=115.3
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc----------cCceeeeecccch--hhhcccchhhHHHHHHHHHhc-CCceeE
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFV--EIYVGVGASRVRSLYQEAKDN-APSVVF 493 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l----------~~~~~~i~~~~~~--~~~~gq~~~~l~~~f~~a~~~-~p~iL~ 493 (862)
..+.+++|+||||||||++++.++..+ +.+++.++++.+. ..|.|.....+..++..+... .|+++|
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 268 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILF 268 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEE
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEE
Confidence 445679999999999999999999987 6788888887765 346676677788888888765 678999
Q ss_pred hHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCC----CCCccccCCCCccccccCCCCCHH
Q 002961 494 IDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD----ILDPALVRPGRFDRKIFIPKPGLI 569 (862)
Q Consensus 494 iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~----~Ld~aLlrpgRfd~~I~~~~P~~~ 569 (862)
|||++.+.+.... .++. ...+.|...++ .+.+.+|++||.++ .++++|.+ ||+. |.|+.|+.+
T Consensus 269 IDEi~~l~~~~~~---~g~~---~~~~~L~~~l~----~~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~ 335 (854)
T 1qvr_A 269 IDELHTVVGAGKA---EGAV---DAGNMLKPALA----RGELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVE 335 (854)
T ss_dssp ECCC-------------------------HHHHH----TTCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHH
T ss_pred EecHHHHhccCCc---cchH---HHHHHHHHHHh----CCCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHH
Confidence 9999998654221 1111 12333333333 35678888888764 47999999 9984 999999999
Q ss_pred hHHHHHHHHHccC----CC-CCcccHHHHHh-----hcCCCCHHHHHHHHHHHHHHHHHh
Q 002961 570 GRMEILKVHARKK----PM-ADDVDYLAVAS-----MTDGMVGAELANIVEVAAINMMRD 619 (862)
Q Consensus 570 ~R~~Il~~~l~~~----~~-~~~~dl~~lA~-----~t~G~s~adI~~lv~~A~~~A~~~ 619 (862)
++..|++.++... .+ ..+..+..++. .++++.+.....++.+|+..+...
T Consensus 336 e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 336 ETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhh
Confidence 9999998766432 11 12233444444 345677888889999887666544
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.19 E-value=2.8e-11 Score=147.54 Aligned_cols=165 Identities=24% Similarity=0.349 Sum_probs=114.2
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc----------cCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHH
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDE 496 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l----------~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDE 496 (862)
..+.+++|+||||||||+++++||..+ +..++.+++ ...|.|.....++.+|..+....|+++|||
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD- 274 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID- 274 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC-
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-
Confidence 556689999999999999999999986 666666666 344677777788999999998889999999
Q ss_pred HHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCC-----CCCccccCCCCccccccCCCCCHHhH
Q 002961 497 LDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGR 571 (862)
Q Consensus 497 id~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~-----~Ld~aLlrpgRfd~~I~~~~P~~~~R 571 (862)
+.. ...+.|+..|+ .+.+.+|++||..+ .+|++++| ||. .|.|+.|+.+++
T Consensus 275 ----~~~-------------~~~~~L~~~l~----~~~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~ 330 (758)
T 3pxi_A 275 ----AAI-------------DASNILKPSLA----RGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDES 330 (758)
T ss_dssp ----C---------------------CCCTT----SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHH
T ss_pred ----Cch-------------hHHHHHHHHHh----cCCEEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHH
Confidence 110 03444554444 56789999999888 69999999 995 699999999999
Q ss_pred HHHHHHHHccCC----C-CCcccHHHHHhh-----cCCCCHHHHHHHHHHHHHHHHHh
Q 002961 572 MEILKVHARKKP----M-ADDVDYLAVASM-----TDGMVGAELANIVEVAAINMMRD 619 (862)
Q Consensus 572 ~~Il~~~l~~~~----~-~~~~dl~~lA~~-----t~G~s~adI~~lv~~A~~~A~~~ 619 (862)
..||+.++.... + ..+..+..++.. ++++.+.....++..|+..+...
T Consensus 331 ~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 331 IQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLR 388 (758)
T ss_dssp HHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhh
Confidence 999997765421 1 122233444432 44667788888888887665544
No 70
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.19 E-value=8.1e-11 Score=127.33 Aligned_cols=173 Identities=15% Similarity=0.180 Sum_probs=119.6
Q ss_pred eEEEECCCCCchhHHHHHHHhhc-----cCceeeeecccchhhhcccchhhHHHHHHHHH-------hcCCceeEhHHHH
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGASRVRSLYQEAK-------DNAPSVVFIDELD 498 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l-----~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~-------~~~p~iL~iDEid 498 (862)
.++|+||+|+|||++++.++..+ ...++.++++.. .....++.++..+. ...+.+++|||++
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~ 117 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD------RGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEAD 117 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC------CSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc------cChHHHHHHHHHHHhccccCCCCCceEEEEECcc
Confidence 39999999999999999999875 234555554431 11233455555544 2236799999999
Q ss_pred HhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHH
Q 002961 499 AVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH 578 (862)
Q Consensus 499 ~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~ 578 (862)
.+... ..+.|+..++.. ..++.+|++||.+..+++++.+ |+. .+.|++|+.++...++...
T Consensus 118 ~l~~~--------------~~~~L~~~le~~--~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~ 178 (323)
T 1sxj_B 118 SMTAG--------------AQQALRRTMELY--SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQI 178 (323)
T ss_dssp GSCHH--------------HHHTTHHHHHHT--TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHH
T ss_pred cCCHH--------------HHHHHHHHHhcc--CCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHH
Confidence 87543 445566666643 3467788888999999999998 655 8999999999999999988
Q ss_pred HccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 579 ARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 579 l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
+...... ++..+..++..+.| +++.+.++++.+... . ..|+.+++.+++.
T Consensus 179 ~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~~~---~--~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 179 IKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTVAG---H--GLVNADNVFKIVD 229 (323)
T ss_dssp HHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHH---H--SSBCHHHHHHHHT
T ss_pred HHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc---C--CCcCHHHHHHHHC
Confidence 7543322 33446677888766 444455666555421 1 3699999988764
No 71
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.19 E-value=9.8e-11 Score=129.58 Aligned_cols=181 Identities=19% Similarity=0.231 Sum_probs=123.1
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCceee--eeccc--------------chhhh--cccchhhHHHHHHHHHh----
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISASQ--------------FVEIY--VGVGASRVRSLYQEAKD---- 486 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~--i~~~~--------------~~~~~--~gq~~~~l~~~f~~a~~---- 486 (862)
+..++|+||+|+|||+++++++..+...... ..|+. +.... .......++.+++.+..
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhcccc
Confidence 4568999999999999999999877542111 01110 00000 00112335666665542
Q ss_pred cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCC
Q 002961 487 NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKP 566 (862)
Q Consensus 487 ~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P 566 (862)
..+.+++|||++.+... .++.|+..++.. ..++++|++||.+..+++.+++ |+ ..+.|++|
T Consensus 118 ~~~~vliiDe~~~l~~~--------------~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l 178 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRH--------------SFNALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKAL 178 (373)
T ss_dssp SSSEEEEEECGGGSCHH--------------HHHHHHHHHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCC
T ss_pred CCeEEEEEECcchhcHH--------------HHHHHHHHHhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCC
Confidence 23579999999987533 566777777753 3468888888888889999988 65 58999999
Q ss_pred CHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 002961 567 GLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 633 (862)
Q Consensus 567 ~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al 633 (862)
+.++...++..++....+. ++..+..++..+.| +++.+.++++.+... +...||.+++.+++
T Consensus 179 ~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~~~~~l~~~~~~----~~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAIAS----GDGQVSTQAVSAML 241 (373)
T ss_dssp CHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHHHHHHHHHHHHH----TTTCBCHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHh----cCCcccHHHHHHHh
Confidence 9999999999888654332 23346678888866 677788888776532 23569999998775
No 72
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.17 E-value=4.4e-11 Score=139.52 Aligned_cols=183 Identities=18% Similarity=0.208 Sum_probs=114.1
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccc-h------hhHHHHHHHH-----HhcCCceeEhH
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVG-A------SRVRSLYQEA-----KDNAPSVVFID 495 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~-~------~~l~~~f~~a-----~~~~p~iL~iD 495 (862)
.+..++|+||+|||||+++++++..++.++++++++.......... . ..+..+|..+ ....+++++||
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliID 155 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMD 155 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEE
Confidence 4568999999999999999999999999999998876543311100 0 0012222222 12457899999
Q ss_pred HHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHH
Q 002961 496 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEIL 575 (862)
Q Consensus 496 Eid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il 575 (862)
|+|.+..... ..++.|+..++.. ...+++++++.....++ .+. |+...+.|++|+.+++..++
T Consensus 156 Eid~l~~~~~-----------~~l~~L~~~l~~~--~~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L 218 (516)
T 1sxj_A 156 EVDGMSGGDR-----------GGVGQLAQFCRKT--STPLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRL 218 (516)
T ss_dssp SGGGCCTTST-----------THHHHHHHHHHHC--SSCEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHH
T ss_pred CCCccchhhH-----------HHHHHHHHHHHhc--CCCEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHH
Confidence 9999854311 0344555555432 23455555544434444 344 34458999999999999999
Q ss_pred HHHHcc--CCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 576 KVHARK--KPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 576 ~~~l~~--~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
...+.. ..+. +..+..++..+.|.. +.+.++++.+ +. +...|+.+++..++.
T Consensus 219 ~~i~~~~~~~i~-~~~l~~la~~s~Gdi-R~~i~~L~~~---~~--~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 219 MTIAIREKFKLD-PNVIDRLIQTTRGDI-RQVINLLSTI---ST--TTKTINHENINEISK 272 (516)
T ss_dssp HHHHHHHTCCCC-TTHHHHHHHHTTTCH-HHHHHHHTHH---HH--HSSCCCTTHHHHHHH
T ss_pred HHHHHHcCCCCC-HHHHHHHHHHcCCcH-HHHHHHHHHH---Hh--cCCCCchHHHHHHHH
Confidence 877643 2333 344778888876633 3333444333 22 345699999888776
No 73
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.12 E-value=2.1e-10 Score=124.20 Aligned_cols=172 Identities=25% Similarity=0.287 Sum_probs=116.9
Q ss_pred eEEEECCCCCchhHHHHHHHhhcc-----CceeeeecccchhhhcccchhhHHHHHHHHHh------cCCceeEhHHHHH
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAG-----VNFFSISASQFVEIYVGVGASRVRSLYQEAKD------NAPSVVFIDELDA 499 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~-----~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~------~~p~iL~iDEid~ 499 (862)
+++|+||+|+|||+++++++..+. ..++.+++++... ...++..+..... ..+.++++||++.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 121 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEADA 121 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCc
Confidence 599999999999999999998763 2355555443211 0111222222111 3467999999998
Q ss_pred hhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHH
Q 002961 500 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 579 (862)
Q Consensus 500 l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l 579 (862)
+... ..+.|+..++.. ..++.+|++||.+..+++++.+ |+. .+.|++|+.++...++...+
T Consensus 122 l~~~--------------~~~~L~~~le~~--~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~ 182 (327)
T 1iqp_A 122 LTQD--------------AQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIA 182 (327)
T ss_dssp SCHH--------------HHHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHH
T ss_pred CCHH--------------HHHHHHHHHHhc--CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHH
Confidence 7543 456677777653 3467888889999999999988 776 78999999999999999888
Q ss_pred ccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 002961 580 RKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 633 (862)
Q Consensus 580 ~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al 633 (862)
....+. ++..+..++..+.| +.+.+.++++.+.. ....||.+++..++
T Consensus 183 ~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~-----~~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 183 ENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAA-----LDKKITDENVFMVA 231 (327)
T ss_dssp HTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHT-----TCSEECHHHHHHHT
T ss_pred HhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHh-----cCCCCCHHHHHHHH
Confidence 655432 33446667777765 55555566664432 23368888887764
No 74
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.10 E-value=2.3e-11 Score=120.20 Aligned_cols=129 Identities=32% Similarity=0.489 Sum_probs=86.1
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc----------cCceeeeecccchhh--hcccchhhHHHHHHHHHhc-CCceeE
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFVEI--YVGVGASRVRSLYQEAKDN-APSVVF 493 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l----------~~~~~~i~~~~~~~~--~~gq~~~~l~~~f~~a~~~-~p~iL~ 493 (862)
..+..++|+||+|+|||++++.++..+ +.+++.+++..+... +.+.....+..++..+... .|.+++
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 120 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMF 120 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEE
Confidence 345679999999999999999999876 566666666554321 2333333456666666554 577999
Q ss_pred hHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCC-----CCCccccCCCCccccccCCCCC
Q 002961 494 IDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD-----ILDPALVRPGRFDRKIFIPKPG 567 (862)
Q Consensus 494 iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~-----~Ld~aLlrpgRfd~~I~~~~P~ 567 (862)
|||++.+....... .+... .++.+...++ ...+++|++||.+. .+++++++ ||+ .+.+++|+
T Consensus 121 iDe~~~l~~~~~~~--~~~~~---~~~~l~~~~~----~~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 121 IDEIHTVVGAGAVA--EGALD---AGNILKPMLA----RGELRCIGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp ETTGGGGSSSSSSC--TTSCC---THHHHHHHHH----TTCSCEEEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred EeCHHHhccccccc--ccchH---HHHHHHHHHh----cCCeeEEEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 99999986432210 00111 2333333333 35678888888765 68999999 999 48999885
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.10 E-value=9.3e-11 Score=129.16 Aligned_cols=177 Identities=19% Similarity=0.238 Sum_probs=114.5
Q ss_pred EEEECCCCCchhHHHHHHHhhccCc-----eeeeecccchhhhcccchhhHHHHHHHHHh------cCCceeEhHHHHHh
Q 002961 432 ILLCGPPGVGKTLLAKAVAGEAGVN-----FFSISASQFVEIYVGVGASRVRSLYQEAKD------NAPSVVFIDELDAV 500 (862)
Q Consensus 432 vlL~GpnGtGKTtLakaLA~~l~~~-----~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~------~~p~iL~iDEid~l 500 (862)
++|+||||+||||+++++++.+... +..++.+.. .+...++..+..+.. ..+.++++||+|.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~------~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l 122 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD------RGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAM 122 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC------CSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGS
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc------ccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCC
Confidence 8999999999999999999986432 333333321 112223333333331 13578999999987
Q ss_pred hhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHHHc
Q 002961 501 GRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR 580 (862)
Q Consensus 501 ~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~ 580 (862)
... ..+.|+..++... ..+.+|.+||.+..+.+++++ |+. .+.|++++.++...++...+.
T Consensus 123 ~~~--------------~~~~L~~~le~~~--~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~ 183 (340)
T 1sxj_C 123 TNA--------------AQNALRRVIERYT--KNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLV 183 (340)
T ss_dssp CHH--------------HHHHHHHHHHHTT--TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred CHH--------------HHHHHHHHHhcCC--CCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHH
Confidence 543 4566777777543 456777888999999999999 765 788999999999998888875
Q ss_pred cCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 581 KKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 581 ~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
...+. ++.....++..+.| ..+.+.++++.+...+...+...||.+++..++.
T Consensus 184 ~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~ 237 (340)
T 1sxj_C 184 HEKLKLSPNAEKALIELSNG-DMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 237 (340)
T ss_dssp TTTCCBCHHHHHHHHHHHTT-CHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTT
T ss_pred HcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCcccccccHHHHHHHhC
Confidence 43322 23345667777665 3444445554443222111233699998877653
No 76
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.04 E-value=2.9e-10 Score=135.15 Aligned_cols=132 Identities=19% Similarity=0.308 Sum_probs=87.9
Q ss_pred cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccc-------------------cCCCcEEEEEecCCC--C
Q 002961 487 NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF-------------------EGRGNVITIASTNRP--D 545 (862)
Q Consensus 487 ~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~-------------------~~~~~vlvI~tTN~~--~ 545 (862)
..++++||||++.+... ..+.|+..|+.- .-..++.||++||.. .
T Consensus 200 a~~gvL~LDEi~~l~~~--------------~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~ 265 (604)
T 3k1j_A 200 AHKGVLFIDEIATLSLK--------------MQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVD 265 (604)
T ss_dssp TTTSEEEETTGGGSCHH--------------HHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHH
T ss_pred cCCCEEEEechhhCCHH--------------HHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHh
Confidence 35679999999987432 556666666521 112367899999976 6
Q ss_pred CCCccccCCCCcc---ccccCCCC---CHHhHHHHHHHHHcc------CCCCCcccHHHHHhh---cCCC------CHHH
Q 002961 546 ILDPALVRPGRFD---RKIFIPKP---GLIGRMEILKVHARK------KPMADDVDYLAVASM---TDGM------VGAE 604 (862)
Q Consensus 546 ~Ld~aLlrpgRfd---~~I~~~~P---~~~~R~~Il~~~l~~------~~~~~~~dl~~lA~~---t~G~------s~ad 604 (862)
.++++|++ ||+ ..+.|+.. ..+....+++..... .....+..+..+... ..|. +.++
T Consensus 266 ~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~ 343 (604)
T 3k1j_A 266 KMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRD 343 (604)
T ss_dssp HSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHH
T ss_pred hcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHH
Confidence 79999999 886 45555532 233455555433321 111122334444432 2553 7899
Q ss_pred HHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 605 LANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 605 I~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
+.++++.|...|...+...|+.+|+.+|+.
T Consensus 344 l~~llr~A~~~A~~~~~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 344 LGGIVRAAGDIAVKKGKKYVEREDVIEAVK 373 (604)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccccHHHHHHHHH
Confidence 999999999999889999999999999985
No 77
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.03 E-value=5.5e-10 Score=123.00 Aligned_cols=162 Identities=18% Similarity=0.227 Sum_probs=104.5
Q ss_pred EEEECCCCCchhHHHHHHHhhc-cCceeeeecc--------------------cchhh---hcccch-hhHHHHHHHHH-
Q 002961 432 ILLCGPPGVGKTLLAKAVAGEA-GVNFFSISAS--------------------QFVEI---YVGVGA-SRVRSLYQEAK- 485 (862)
Q Consensus 432 vlL~GpnGtGKTtLakaLA~~l-~~~~~~i~~~--------------------~~~~~---~~gq~~-~~l~~~f~~a~- 485 (862)
++|+||||+||||++++|++.+ ++..+.+... .+... ..+... ..++..+..+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 118 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ 118 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHH
Confidence 9999999999999999999954 3322211100 00000 000000 01334444332
Q ss_pred -------------hcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCcccc
Q 002961 486 -------------DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALV 552 (862)
Q Consensus 486 -------------~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLl 552 (862)
...|.++++||++.+... ..+.|+..|+... .+..+|.+||.++.+.++++
T Consensus 119 ~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~--------------~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~ 182 (354)
T 1sxj_E 119 MEQVDFQDSKDGLAHRYKCVIINEANSLTKD--------------AQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIK 182 (354)
T ss_dssp TTC------------CCEEEEEECTTSSCHH--------------HHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHH
T ss_pred hccccccccccccCCCCeEEEEeCccccCHH--------------HHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHH
Confidence 225679999999885322 4566777776543 35788888899999999999
Q ss_pred CCCCccccccCCCCCHHhHHHHHHHHHccCCCC-C-cccHHHHHhhcCCCCHHHHHHHHHHHH
Q 002961 553 RPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-D-DVDYLAVASMTDGMVGAELANIVEVAA 613 (862)
Q Consensus 553 rpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~~~-~-~~dl~~lA~~t~G~s~adI~~lv~~A~ 613 (862)
+ |+ ..+.|++|+.++...+++..+....+. + +..+..++..+.| +.+++.++++.+.
T Consensus 183 s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 183 S--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNG-NLRVSLLMLESMA 241 (354)
T ss_dssp T--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHH
T ss_pred h--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 8 66 589999999999999999887654332 2 4456778887766 4555667766554
No 78
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.01 E-value=5.8e-10 Score=118.16 Aligned_cols=180 Identities=19% Similarity=0.208 Sum_probs=106.6
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhcc---Cceeeeecccchhh-----hcccchhhH-------HHHHHHHHhcCCcee
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAG---VNFFSISASQFVEI-----YVGVGASRV-------RSLYQEAKDNAPSVV 492 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~---~~~~~i~~~~~~~~-----~~gq~~~~l-------~~~f~~a~~~~p~iL 492 (862)
.+..++|+||+|||||+++++|+.... .+++.++++.+... .+|...... ...+. ...++++
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~---~a~~~~l 104 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFE---RADGGTL 104 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHH---HTTTSEE
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhh---hcCCcEE
Confidence 346799999999999999999998764 57889988875322 122111000 01121 2345799
Q ss_pred EhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc---------CCCcEEEEEecCCC-------CCCCccccCCCC
Q 002961 493 FIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRP-------DILDPALVRPGR 556 (862)
Q Consensus 493 ~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~---------~~~~vlvI~tTN~~-------~~Ld~aLlrpgR 556 (862)
||||++.+... .+..|+..|+... ...++.+|+|||.. ..+++.|.+ |
T Consensus 105 ~lDEi~~l~~~--------------~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--R 168 (265)
T 2bjv_A 105 FLDELATAPMM--------------VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--A 168 (265)
T ss_dssp EEESGGGSCHH--------------HHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--H
T ss_pred EEechHhcCHH--------------HHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--h
Confidence 99999988543 4555666665321 12457889999874 246788887 8
Q ss_pred ccc-cccCCCCCH--HhHHHHHHHHHcc----CCC-----CCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCccc
Q 002961 557 FDR-KIFIPKPGL--IGRMEILKVHARK----KPM-----ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEI 624 (862)
Q Consensus 557 fd~-~I~~~~P~~--~~R~~Il~~~l~~----~~~-----~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~I 624 (862)
|.. .|.+|+... ++...++.+++.. ... ..+..+..+....-..+.+++.++++.+...+ ....|
T Consensus 169 l~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i 245 (265)
T 2bjv_A 169 LAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH---GTSDY 245 (265)
T ss_dssp HCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHH---CCSSS
T ss_pred hcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC---CCCcC
Confidence 863 455555443 4455555555432 221 12222344444432235678888888876443 23456
Q ss_pred CHHHH
Q 002961 625 TTDDL 629 (862)
Q Consensus 625 t~edl 629 (862)
+.+|+
T Consensus 246 ~~~~l 250 (265)
T 2bjv_A 246 PLDDI 250 (265)
T ss_dssp CBCCC
T ss_pred cHHHc
Confidence 66655
No 79
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.01 E-value=1.2e-09 Score=120.27 Aligned_cols=162 Identities=17% Similarity=0.212 Sum_probs=108.5
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceee--eecc--------------cchhhhc-----ccchhhHHHHHHHHH
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISAS--------------QFVEIYV-----GVGASRVRSLYQEAK 485 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~--i~~~--------------~~~~~~~-----gq~~~~l~~~f~~a~ 485 (862)
+.+..++|+||+|+|||+++++++..+...... ..|+ ++..... ......++.+++.+.
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~ 101 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLN 101 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTT
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHh
Confidence 445679999999999999999999876432110 0010 0000000 112234566666654
Q ss_pred h----cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccc
Q 002961 486 D----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKI 561 (862)
Q Consensus 486 ~----~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I 561 (862)
. ..+.|++|||+|.+... ..+.|+..|+. +..++++|.+||.++.+++++++ |+. .+
T Consensus 102 ~~~~~~~~kvviIdead~l~~~--------------a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc~-~~ 162 (334)
T 1a5t_A 102 EHARLGGAKVVWVTDAALLTDA--------------AANALLKTLEE--PPAETWFFLATREPERLLATLRS--RCR-LH 162 (334)
T ss_dssp SCCTTSSCEEEEESCGGGBCHH--------------HHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TSE-EE
T ss_pred hccccCCcEEEEECchhhcCHH--------------HHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cce-ee
Confidence 3 23579999999988543 56788888875 34578888888999999999999 554 79
Q ss_pred cCCCCCHHhHHHHHHHHHccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHH
Q 002961 562 FIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVA 612 (862)
Q Consensus 562 ~~~~P~~~~R~~Il~~~l~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A 612 (862)
.|++|+.++...++.... .+ ++..+..++..+.| +++.+.++++..
T Consensus 163 ~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~~~ 208 (334)
T 1a5t_A 163 YLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQGD 208 (334)
T ss_dssp ECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTSSH
T ss_pred eCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhccc
Confidence 999999999999988775 22 33445667777765 444455555543
No 80
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.00 E-value=2.5e-10 Score=124.24 Aligned_cols=181 Identities=20% Similarity=0.182 Sum_probs=109.5
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh-----hcccchh-------hHHHHHHHHHhcCCcee
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGAS-------RVRSLYQEAKDNAPSVV 492 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~-----~~gq~~~-------~l~~~f~~a~~~~p~iL 492 (862)
.+..|+|+|++|||||+++++|+... +.+++.++|+.+... .+|.... .....|..+ .++++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L 100 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA---DGGTL 100 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHH---TTSEE
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhc---CCCEE
Confidence 45679999999999999999999854 567888988775432 2221100 012233332 34689
Q ss_pred EhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc---------CCCcEEEEEecCCC-------CCCCccccCCCC
Q 002961 493 FIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRP-------DILDPALVRPGR 556 (862)
Q Consensus 493 ~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~---------~~~~vlvI~tTN~~-------~~Ld~aLlrpgR 556 (862)
|||||+.+... ....|+..|+... ...++.||++||.. ..+++.|.+ |
T Consensus 101 ~LDEi~~l~~~--------------~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--R 164 (304)
T 1ojl_A 101 FLDEIGDISPL--------------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--R 164 (304)
T ss_dssp EEESCTTCCHH--------------HHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--H
T ss_pred EEeccccCCHH--------------HHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--h
Confidence 99999988543 4556666666432 12357899999875 235566666 6
Q ss_pred cc-ccccCCCCC--HHhHHHHHHHHHccC----C----CCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccC
Q 002961 557 FD-RKIFIPKPG--LIGRMEILKVHARKK----P----MADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEIT 625 (862)
Q Consensus 557 fd-~~I~~~~P~--~~~R~~Il~~~l~~~----~----~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It 625 (862)
|. ..|.+|+.. .++...++.+++... . ...+..+..+....-.-+.+++.++++.+...+ ....|+
T Consensus 165 l~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~---~~~~i~ 241 (304)
T 1ojl_A 165 LNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL---TGEYIS 241 (304)
T ss_dssp HSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHC---CSSSBC
T ss_pred cCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC---CCCccc
Confidence 64 235565554 455666777665321 1 112233445555542235677888888776433 334677
Q ss_pred HHHHH
Q 002961 626 TDDLL 630 (862)
Q Consensus 626 ~edl~ 630 (862)
.+|+.
T Consensus 242 ~~~l~ 246 (304)
T 1ojl_A 242 ERELP 246 (304)
T ss_dssp GGGSC
T ss_pred HHhhh
Confidence 76663
No 81
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.99 E-value=1.4e-09 Score=94.17 Aligned_cols=74 Identities=27% Similarity=0.478 Sum_probs=69.9
Q ss_pred CCCCHHhHHHHHHHHHccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHh
Q 002961 564 PKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 637 (862)
Q Consensus 564 ~~P~~~~R~~Il~~~l~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 637 (862)
|+|+.++|.+||+.++++..+..++|+..||..|+||||+||.++|++|+..|.+++...|+.+||..|+....
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999988888999999999999999999999999999999999999999999999998543
No 82
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.96 E-value=3.7e-09 Score=118.38 Aligned_cols=197 Identities=16% Similarity=0.156 Sum_probs=124.9
Q ss_pred cCCeEEE--ECCCCCchhHHHHHHHhhc---------cCceeeeecccchhh---------hccc-------chhh-HHH
Q 002961 428 IPGGILL--CGPPGVGKTLLAKAVAGEA---------GVNFFSISASQFVEI---------YVGV-------GASR-VRS 479 (862)
Q Consensus 428 ~~~~vlL--~GpnGtGKTtLakaLA~~l---------~~~~~~i~~~~~~~~---------~~gq-------~~~~-l~~ 479 (862)
.+..++| +||+|+|||+|++.++..+ +..++++++...... .++. .... +..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 128 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKA 128 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 3456888 9999999999999999876 345666665331111 0111 1111 222
Q ss_pred HHHHHH-hcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc-CC--CcEEEEEecCCCC---CCC---c
Q 002961 480 LYQEAK-DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-GR--GNVITIASTNRPD---ILD---P 549 (862)
Q Consensus 480 ~f~~a~-~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~-~~--~~vlvI~tTN~~~---~Ld---~ 549 (862)
+...+. ...|.+++|||++.+..... .+ ...+..++..+.... .. .++.+|++||.++ .++ +
T Consensus 129 l~~~l~~~~~~~llvlDe~~~l~~~~~-----~~---~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~ 200 (412)
T 1w5s_A 129 LVDNLYVENHYLLVILDEFQSMLSSPR-----IA---AEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIP 200 (412)
T ss_dssp HHHHHHHHTCEEEEEEESTHHHHSCTT-----SC---HHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCH
T ss_pred HHHHHHhcCCeEEEEEeCHHHHhhccC-----cc---hHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcc
Confidence 233332 24577999999999854210 00 124555555554432 12 5788888887654 233 5
Q ss_pred cccCCCCccccccCCCCCHHhHHHHHHHHHccC---CCCCcccHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHhC
Q 002961 550 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK---PMADDVDYLAVASMTD------GMVGAELANIVEVAAINMMRDG 620 (862)
Q Consensus 550 aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~---~~~~~~dl~~lA~~t~------G~s~adI~~lv~~A~~~A~~~~ 620 (862)
.+.+ ++...+.+++++.++..+++...+... ...++..+..++..+. | .++.+..+++.+...+...+
T Consensus 201 ~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~ 277 (412)
T 1w5s_A 201 QVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMG 277 (412)
T ss_dssp HHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTT
T ss_pred hhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcC
Confidence 5555 555559999999999999998776421 1223344566777777 6 56668888888887777778
Q ss_pred CcccCHHHHHHHHHH
Q 002961 621 RTEITTDDLLQAAQI 635 (862)
Q Consensus 621 ~~~It~edl~~Al~~ 635 (862)
...++.+++..++..
T Consensus 278 ~~~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 278 RDSLSEDLVRKAVSE 292 (412)
T ss_dssp CSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 888999999887754
No 83
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.91 E-value=2.5e-09 Score=94.46 Aligned_cols=77 Identities=25% Similarity=0.414 Sum_probs=71.2
Q ss_pred ccCCCCCHHhHHHHHHHHHccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHh
Q 002961 561 IFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 637 (862)
Q Consensus 561 I~~~~P~~~~R~~Il~~~l~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 637 (862)
-.-.+|+.++|.+||+.++++..+..++|+..||..|.||||+||.++|++|+..|.+++...|+.+||..|+....
T Consensus 6 ~~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~ 82 (86)
T 2krk_A 6 HHHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 82 (86)
T ss_dssp CCCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 34568999999999999999988888999999999999999999999999999999999999999999999997654
No 84
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.82 E-value=8.3e-09 Score=112.32 Aligned_cols=125 Identities=13% Similarity=0.127 Sum_probs=94.9
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc------cCceeeeecccchhhhcccchhhHHHHHHHHHhcC----CceeEhHHHH
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA------GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNA----PSVVFIDELD 498 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l------~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~----p~iL~iDEid 498 (862)
+..++|+||+|+|||+++++++..+ .+++..++... ...+...++.+++.+...+ ..|++|||+|
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~id~ir~li~~~~~~p~~~~~kvviIdead 92 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCE 92 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCCHHHHHHHHHHHhhccccCCceEEEeccHH
Confidence 3478999999999999999999863 34555555431 0122334677777765432 3589999999
Q ss_pred HhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCCCHHhHHHHHHHH
Q 002961 499 AVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH 578 (862)
Q Consensus 499 ~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~ 578 (862)
.+... ..+.|+..|+.. +.++++|.+||.+..+.|++++ | ++.|++|+.++...++...
T Consensus 93 ~lt~~--------------a~naLLk~LEep--~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~ 151 (305)
T 2gno_A 93 RMTQQ--------------AANAFLKALEEP--PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEK 151 (305)
T ss_dssp GBCHH--------------HHHHTHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHH
T ss_pred HhCHH--------------HHHHHHHHHhCC--CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHH
Confidence 98543 678899889854 4567888888888999999999 7 8999999999999999877
Q ss_pred H
Q 002961 579 A 579 (862)
Q Consensus 579 l 579 (862)
+
T Consensus 152 ~ 152 (305)
T 2gno_A 152 I 152 (305)
T ss_dssp H
T ss_pred h
Confidence 6
No 85
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.77 E-value=1.9e-08 Score=89.22 Aligned_cols=73 Identities=23% Similarity=0.404 Sum_probs=67.6
Q ss_pred CHHhHHHHHHHHHccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHhcc
Q 002961 567 GLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERG 639 (862)
Q Consensus 567 ~~~~R~~Il~~~l~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~~ 639 (862)
|.++|.+||+.++++.++..++|+..||..|+||||+||.++|++|+..|.+++...|+.+||..|+.....+
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~ 74 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 74 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcC
Confidence 5678999999999999998999999999999999999999999999999999999999999999999866544
No 86
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.68 E-value=1.8e-08 Score=97.16 Aligned_cols=91 Identities=13% Similarity=0.114 Sum_probs=63.2
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhc
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRER 504 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~ 504 (862)
.+..|+|+||+|||||+++++|+... +.+++ ++++.+... ......+..+ ..+++||||++.+...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a---~~g~l~ldei~~l~~~- 91 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALA---QGGTLVLSHPEHLTRE- 91 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHH---TTSCEEEECGGGSCHH-
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHc---CCcEEEEcChHHCCHH-
Confidence 34568999999999999999999876 66777 888764332 2233444443 3468999999988543
Q ss_pred cCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCC
Q 002961 505 GLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 544 (862)
Q Consensus 505 ~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~ 544 (862)
....|+..|... ..++.+|+|||.+
T Consensus 92 -------------~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 92 -------------QQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp -------------HHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred -------------HHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 445566666432 3456788888863
No 87
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.67 E-value=5.2e-09 Score=100.79 Aligned_cols=91 Identities=16% Similarity=0.210 Sum_probs=64.2
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccCc
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLI 507 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~ 507 (862)
.+..|+|+||+|||||+++++|+.... +++.++++.+...+ ....++. ..++++||||++.+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~---a~~~~l~lDei~~l~~~---- 90 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQK---AEGGVLYVGDIAQYSRN---- 90 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHH---TTTSEEEEEECTTCCHH----
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHh---CCCCeEEEeChHHCCHH----
Confidence 445799999999999999999999877 88888887644322 2334443 33578999999988543
Q ss_pred CCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCC
Q 002961 508 KGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 544 (862)
Q Consensus 508 ~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~ 544 (862)
....|+..++... ..++.+|+|||..
T Consensus 91 ----------~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 91 ----------IQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp ----------HHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred ----------HHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 3455555555432 3457788888753
No 88
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.60 E-value=6.4e-08 Score=84.58 Aligned_cols=71 Identities=17% Similarity=0.234 Sum_probs=66.3
Q ss_pred CHHhHHHHHHHHHccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHh
Q 002961 567 GLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 637 (862)
Q Consensus 567 ~~~~R~~Il~~~l~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 637 (862)
+.++|.+||+.++++.++..++|+..+|..|+||||+||.++|++|+..|.+++...|+.+||..|+....
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 67899999999999988888999999999999999999999999999999999988999999999997554
No 89
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.56 E-value=8e-08 Score=129.02 Aligned_cols=144 Identities=22% Similarity=0.339 Sum_probs=94.0
Q ss_pred ccccccCCeEEEECCCCCchhHHH-HHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHH---------------h
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLA-KAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAK---------------D 486 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLa-kaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~---------------~ 486 (862)
...+..+.+++|+||||||||+++ +.++...+..+..++++.... ...+...++... .
T Consensus 1261 ~~~l~~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~ 1334 (2695)
T 4akg_A 1261 YDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSD 1334 (2695)
T ss_dssp HHHHHHTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSS
T ss_pred HHHHHCCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCC
Confidence 344567789999999999999999 555554455666666654221 122333333221 1
Q ss_pred cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCC--------CcEEEEEecCCCC-----CCCccccC
Q 002961 487 NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGR--------GNVITIASTNRPD-----ILDPALVR 553 (862)
Q Consensus 487 ~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~--------~~vlvI~tTN~~~-----~Ld~aLlr 553 (862)
..++|+||||++.-.... -|.+.....+.++++ ..++... .++.+|+|||++. .++++++|
T Consensus 1335 gk~~VlFiDEinmp~~d~-----yg~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR 1408 (2695)
T 4akg_A 1335 IKNLVLFCDEINLPKLDK-----YGSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR 1408 (2695)
T ss_dssp SSCEEEEEETTTCSCCCS-----SSCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT
T ss_pred CceEEEEecccccccccc-----cCchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh
Confidence 123599999997532221 123333344555542 2222211 3589999999995 79999999
Q ss_pred CCCccccccCCCCCHHhHHHHHHHHHcc
Q 002961 554 PGRFDRKIFIPKPGLIGRMEILKVHARK 581 (862)
Q Consensus 554 pgRfd~~I~~~~P~~~~R~~Il~~~l~~ 581 (862)
|| .++.++.|+.+++..|+..++..
T Consensus 1409 --rf-~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1409 --HA-AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp --TE-EEEECCCCTTTHHHHHHHHHHHH
T ss_pred --ee-eEEEeCCCCHHHHHHHHHHHHHH
Confidence 88 68999999999999999988754
No 90
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.55 E-value=3e-08 Score=96.53 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=41.9
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHh
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAV 500 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l 500 (862)
.+..++|+||||+|||||+++|++.+ +...++++...+... .+ ...|++++|||++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~----------~~-----~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT----------DA-----AFEAEYLAVDQVEKL 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC----------GG-----GGGCSEEEEESTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH----------HH-----HhCCCEEEEeCcccc
Confidence 56679999999999999999999987 444556655443221 00 234789999999764
No 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.45 E-value=5.8e-08 Score=96.58 Aligned_cols=75 Identities=20% Similarity=0.292 Sum_probs=47.2
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhc----cCceeeeecccchhhhcccchh-hHHHHHHHHHhcCCceeEhHHH
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----GVNFFSISASQFVEIYVGVGAS-RVRSLYQEAKDNAPSVVFIDEL 497 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l----~~~~~~i~~~~~~~~~~gq~~~-~l~~~f~~a~~~~p~iL~iDEi 497 (862)
++.+..+..++|+||||+|||||+++|++.+ +..+..++..++...+...... ....++..+ ..|.+++|||+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~ 109 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDL 109 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCC
Confidence 4566678889999999999999999999987 3445555555443321110000 001122222 25789999998
Q ss_pred HH
Q 002961 498 DA 499 (862)
Q Consensus 498 d~ 499 (862)
+.
T Consensus 110 ~~ 111 (180)
T 3ec2_A 110 GS 111 (180)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 92
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.45 E-value=8.4e-08 Score=83.76 Aligned_cols=69 Identities=26% Similarity=0.310 Sum_probs=52.2
Q ss_pred HhHHHHHHHHHccCCCCCcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHh
Q 002961 569 IGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 637 (862)
Q Consensus 569 ~~R~~Il~~~l~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 637 (862)
++|.+||+.++++.++..++|+..+|..|+||||+||.++|++|+..|.+++...|+.+|+..|+....
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 468999999999888888899999999999999999999999999999999999999999999987543
No 93
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.38 E-value=7.3e-07 Score=101.28 Aligned_cols=187 Identities=14% Similarity=0.100 Sum_probs=110.1
Q ss_pred CCeEEEECCCCCchhHHHHHH-HhhccCceeeeecc-c----chhhhcccchhhH-HHHHHHHHhcCCceeEhHHHHHhh
Q 002961 429 PGGILLCGPPGVGKTLLAKAV-AGEAGVNFFSISAS-Q----FVEIYVGVGASRV-RSLYQEAKDNAPSVVFIDELDAVG 501 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaL-A~~l~~~~~~i~~~-~----~~~~~~gq~~~~l-~~~f~~a~~~~p~iL~iDEid~l~ 501 (862)
.-+|+|.|+||+ ||+|++.+ +..+... .+.... . +.....+.+...+ ...+. ....+++|+|||+.+.
T Consensus 239 dihVLL~G~PGt-KS~Lar~i~~~i~pR~-~ft~g~~ss~~gLt~s~r~~tG~~~~~G~l~---LAdgGvl~lDEIn~~~ 313 (506)
T 3f8t_A 239 RLHVLLAGYPVV-CSEILHHVLDHLAPRG-VYVDLRRTELTDLTAVLKEDRGWALRAGAAV---LADGGILAVDHLEGAP 313 (506)
T ss_dssp CCCEEEESCHHH-HHHHHHHHHHHTCSSE-EEEEGGGCCHHHHSEEEEESSSEEEEECHHH---HTTTSEEEEECCTTCC
T ss_pred ceeEEEECCCCh-HHHHHHHHHHHhCCCe-EEecCCCCCccCceEEEEcCCCcccCCCeeE---EcCCCeeehHhhhhCC
Confidence 347999999999 99999999 6655332 222110 0 0000000000000 01111 1224699999998875
Q ss_pred hhccCcCCCCchhHHHHHHHHHHhhccc-------cCCCcEEEEEecCCCC-----------CCCccccCCCCccccc-c
Q 002961 502 RERGLIKGSGGQERDATLNQLLVCLDGF-------EGRGNVITIASTNRPD-----------ILDPALVRPGRFDRKI-F 562 (862)
Q Consensus 502 ~~~~~~~~Sgge~~r~~l~~LL~~Ld~~-------~~~~~vlvI~tTN~~~-----------~Ld~aLlrpgRfd~~I-~ 562 (862)
.. .+..|++.|+.- .-+..+.||+|+|+.. .|++++++ |||..+ .
T Consensus 314 ~~--------------~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~ 377 (506)
T 3f8t_A 314 EP--------------HRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFL 377 (506)
T ss_dssp HH--------------HHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEET
T ss_pred HH--------------HHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEe
Confidence 44 667777777631 1135689999999865 78889999 998754 4
Q ss_pred CCCCCHHhHH---------HHHH---HHHc-c---CCCCCcc-c-HHHH------H--h------hcCCCCHHHHHHHHH
Q 002961 563 IPKPGLIGRM---------EILK---VHAR-K---KPMADDV-D-YLAV------A--S------MTDGMVGAELANIVE 610 (862)
Q Consensus 563 ~~~P~~~~R~---------~Il~---~~l~-~---~~~~~~~-d-l~~l------A--~------~t~G~s~adI~~lv~ 610 (862)
+..|+.+... +.++ .+.+ . ..+.+.+ + +..+ . . ..-|.|++.+..+++
T Consensus 378 ~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiR 457 (506)
T 3f8t_A 378 GVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVER 457 (506)
T ss_dssp TC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHH
T ss_pred cCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHH
Confidence 4555543211 1122 2222 1 1122111 0 0000 0 0 245789999999999
Q ss_pred HHHHHHHHhCCcccCHHHHHHHHHHH
Q 002961 611 VAAINMMRDGRTEITTDDLLQAAQIE 636 (862)
Q Consensus 611 ~A~~~A~~~~~~~It~edl~~Al~~~ 636 (862)
.|...|..+++..++.+|+..|+...
T Consensus 458 lA~A~A~L~gR~~V~~eDV~~Ai~L~ 483 (506)
T 3f8t_A 458 LAKAHARMRLSDDVEPEDVDIAAELV 483 (506)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999843
No 94
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.29 E-value=4e-07 Score=99.09 Aligned_cols=122 Identities=22% Similarity=0.189 Sum_probs=68.0
Q ss_pred ccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec--ccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhh
Q 002961 425 GVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA--SQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGR 502 (862)
Q Consensus 425 ~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~--~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~ 502 (862)
++..+..++|+||||+|||+|+..++...+....+++. .+....+.......+..+.+.+.... +++||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 45555568999999999999999999765444444444 33222222222233344555555544 999999998744
Q ss_pred hccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccc
Q 002961 503 ERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPAL 551 (862)
Q Consensus 503 ~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aL 551 (862)
.....+..|+ . ...+..++..|..+....++.+|+++| +...++++
T Consensus 197 ~~~~~s~~G~-v-~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGNTTSGG-I-SRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp -----------C-CHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccccccch-H-HHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 3221111111 1 123445555555544445678888888 45555543
No 95
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.28 E-value=7.9e-07 Score=114.87 Aligned_cols=118 Identities=21% Similarity=0.215 Sum_probs=83.4
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccch------------hhhccc----chhhHHHHHHHHHh
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFV------------EIYVGV----GASRVRSLYQEAKD 486 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~------------~~~~gq----~~~~l~~~f~~a~~ 486 (862)
+..++.++|+||||||||+|+++++.+. +-+..+|+..+.. ..+++. ....++.++..++.
T Consensus 1079 ~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~ 1158 (1706)
T 3cmw_A 1079 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1158 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHh
Confidence 3444559999999999999999999765 4455566655433 224444 55667888888899
Q ss_pred cCCceeEhHHHHHhhhhccC---cCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCC
Q 002961 487 NAPSVVFIDELDAVGRERGL---IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 544 (862)
Q Consensus 487 ~~p~iL~iDEid~l~~~~~~---~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~ 544 (862)
..||++++|+++++.+.+.. .++.........++++|..|++.....+|+|| +||+.
T Consensus 1159 ~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1159 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred cCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 99999999999999877332 12211122334689999999987777788888 56654
No 96
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.24 E-value=7.5e-07 Score=94.96 Aligned_cols=56 Identities=13% Similarity=0.107 Sum_probs=45.0
Q ss_pred cccccCccccccccc----cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 407 QYLERGVDVKFSDMY----RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 407 ~l~~~~~s~~~~~~~----~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
.+.++++++.|++.. .++.+..++.++|+||||+|||||+++|+|...+..|.+..
T Consensus 11 ~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~ 70 (266)
T 4g1u_C 11 LLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHL 70 (266)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEE
T ss_pred eEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE
Confidence 366777777776532 37888888899999999999999999999988777776643
No 97
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.22 E-value=1.2e-06 Score=93.98 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=44.2
Q ss_pred ccccCccccccc---cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSD---MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~---~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++ .+ .++.+..+..++|+||||+|||||+++|+|.+.+..|.+..
T Consensus 8 l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~ 67 (275)
T 3gfo_A 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67 (275)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEE
Confidence 566777777753 12 26778888889999999999999999999998887777754
No 98
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.15 E-value=6.2e-07 Score=100.23 Aligned_cols=121 Identities=21% Similarity=0.212 Sum_probs=74.8
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhh
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGR 502 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~ 502 (862)
++++..+..++|+||||+|||||+++|++..+..++.+.... .. ....+..+| ...++++|+++.+..
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~--~~----~~~~lg~~~------q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL--DR----LNFELGVAI------DQFLVVFEDVKGTGG 230 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT--TT----HHHHHGGGT------TCSCEEETTCCCSTT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc--hh----HHHHHHHhc------chhHHHHHHHHHHHH
Confidence 467788888999999999999999999998765443322211 00 000111122 234678999987754
Q ss_pred -hccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCC
Q 002961 503 -ERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPK 565 (862)
Q Consensus 503 -~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~ 565 (862)
.+... ++ ... .....+...+++ .+.++.+||+++.+ +++++|||++..+...+
T Consensus 231 ~~r~l~--~~-~~~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 231 ESRDLP--SG-QGI-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTTCC--CC-SHH-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHhhcc--cc-Ccc-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 22211 11 111 012233333432 35677889999999 79999999998887755
No 99
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.15 E-value=5.7e-07 Score=99.73 Aligned_cols=55 Identities=20% Similarity=0.171 Sum_probs=44.8
Q ss_pred ccccCccccccccc----cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDMY----RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~~----~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++.. .++.+..++-++|.||||||||||+++|+|...+..|.|..
T Consensus 5 l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i 63 (359)
T 3fvq_A 5 LHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISL 63 (359)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEE
Confidence 55667777776522 36777888889999999999999999999999888887754
No 100
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.13 E-value=5.4e-07 Score=100.63 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=44.9
Q ss_pred ccccCccccccccc----cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSDMY----RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~~~----~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++.. .++.+..+.-++|+||||||||||+++|+|...+..|.|...
T Consensus 4 l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~ 63 (381)
T 3rlf_A 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63 (381)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEEC
Confidence 45667777776522 367778888899999999999999999999998888887543
No 101
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.12 E-value=2.4e-06 Score=94.89 Aligned_cols=56 Identities=16% Similarity=0.020 Sum_probs=45.2
Q ss_pred cccccCccccccc------cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 407 QYLERGVDVKFSD------MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 407 ~l~~~~~s~~~~~------~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
.+.++++++.|+. .+ .++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 24 mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i 87 (366)
T 3tui_C 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLV 87 (366)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred eEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEE
Confidence 3667788888853 12 37778888889999999999999999999998888777753
No 102
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.11 E-value=2.2e-06 Score=89.68 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=36.4
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+.+.
T Consensus 25 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~ 65 (235)
T 3tif_A 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID 65 (235)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEEC
Confidence 67778888899999999999999999999998888887643
No 103
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.10 E-value=1.1e-06 Score=97.50 Aligned_cols=56 Identities=21% Similarity=0.180 Sum_probs=45.2
Q ss_pred ccccCccccc-ccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKF-SDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~-~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.| ++. + .++.+..+..++|.||||+|||||+++|+|...+..|.+...
T Consensus 15 l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~ 75 (355)
T 1z47_A 15 IEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIG 75 (355)
T ss_dssp EEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Confidence 6667777777 542 2 377778888899999999999999999999988888877543
No 104
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.10 E-value=2e-05 Score=85.56 Aligned_cols=164 Identities=16% Similarity=0.143 Sum_probs=95.1
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCceeeeecccch-----h--hh-------c--------------cc---------
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV-----E--IY-------V--------------GV--------- 472 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~-----~--~~-------~--------------gq--------- 472 (862)
..++|+||+|+|||+|++.++..++...+++++.... . .. + +.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 110 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGN 110 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSS
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecce
Confidence 4789999999999999999998876666666655320 0 00 0 00
Q ss_pred ---------chhhHHHHHHHHHhc--CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEec
Q 002961 473 ---------GASRVRSLYQEAKDN--APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST 541 (862)
Q Consensus 473 ---------~~~~l~~~f~~a~~~--~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tT 541 (862)
....+..++..+... .|.+++|||++.+..... ......+..+. +.. .++.+|.++
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~-------~~~~~~l~~~~---~~~---~~~~~i~~g 177 (357)
T 2fna_A 111 EIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRG-------VNLLPALAYAY---DNL---KRIKFIMSG 177 (357)
T ss_dssp SEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTT-------CCCHHHHHHHH---HHC---TTEEEEEEE
T ss_pred EEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCc-------hhHHHHHHHHH---HcC---CCeEEEEEc
Confidence 012244555555543 378999999998754100 00111222222 211 245566555
Q ss_pred CCCC---------CCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCCCCCcccHHHHHhhcCCCCHHHHHHHHH
Q 002961 542 NRPD---------ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVE 610 (862)
Q Consensus 542 N~~~---------~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~~~~~~dl~~lA~~t~G~s~adI~~lv~ 610 (862)
+... .....+ .||+...+.+++.+.++..+++...+.......+ +...+...+.|+. .-+..++.
T Consensus 178 ~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~~~i~~~t~G~P-~~l~~~~~ 251 (357)
T 2fna_A 178 SEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-DYEVVYEKIGGIP-GWLTYFGF 251 (357)
T ss_dssp SSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-CHHHHHHHHCSCH-HHHHHHHH
T ss_pred CchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHhCCCH-HHHHHHHH
Confidence 4321 111222 2466678999999999999999887653222222 2367788887754 44555544
No 105
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.10 E-value=4.3e-06 Score=87.73 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=40.9
Q ss_pred ccCccccccccc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 410 ERGVDVKFSDMY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 410 ~~~~s~~~~~~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++++++.|++.+ .++.+.. ..++|+||||+|||||+++|+|...+..|.+..
T Consensus 4 ~~~l~~~y~~~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 57 (240)
T 2onk_A 4 KVRAEKRLGNFRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRL 57 (240)
T ss_dssp EEEEEEEETTEEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEEEEEeCCEEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 445555554433 2677788 889999999999999999999999888887754
No 106
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.09 E-value=5e-06 Score=88.06 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=44.0
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++. + .++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 16 l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~ 74 (256)
T 1vpl_A 16 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV 74 (256)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 5566777777542 2 26777888889999999999999999999998887777754
No 107
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.08 E-value=3.5e-06 Score=93.62 Aligned_cols=55 Identities=22% Similarity=0.178 Sum_probs=42.9
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++. + .++.+..+..++|.||||||||||+++|+|...+..|.+..
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (362)
T 2it1_A 4 IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62 (362)
T ss_dssp EEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEE
Confidence 4455666666542 2 36777788889999999999999999999998877777744
No 108
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.08 E-value=3.2e-06 Score=93.84 Aligned_cols=55 Identities=22% Similarity=0.098 Sum_probs=43.0
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++. + .++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (359)
T 2yyz_A 4 IRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF 62 (359)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEE
Confidence 4556666667542 2 36777788889999999999999999999988877777744
No 109
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.06 E-value=3.6e-06 Score=90.30 Aligned_cols=56 Identities=13% Similarity=0.013 Sum_probs=46.0
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|.+.+..|.+.+.
T Consensus 22 l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~ 81 (279)
T 2ihy_A 22 IQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81 (279)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEEC
Confidence 6677888877642 2 377788888899999999999999999999998888877543
No 110
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.06 E-value=1e-05 Score=83.47 Aligned_cols=56 Identities=20% Similarity=0.183 Sum_probs=44.3
Q ss_pred ccccCccccccc-cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD-MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~-~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++ .+ .++.+..+..++|+||||+|||||+++|+|...+..|.+...
T Consensus 11 l~~~~ls~~y~~~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~ 69 (214)
T 1sgw_A 11 LEIRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYN 69 (214)
T ss_dssp EEEEEEEEESSSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EEEEEEEEEeCCeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEEC
Confidence 556666666654 11 267788888899999999999999999999988888887653
No 111
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.04 E-value=5.4e-06 Score=85.97 Aligned_cols=55 Identities=11% Similarity=0.009 Sum_probs=43.5
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 5 l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 63 (224)
T 2pcj_A 5 LRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL 63 (224)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 4556666666542 2 26777888889999999999999999999998888887754
No 112
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.03 E-value=1.1e-06 Score=88.77 Aligned_cols=69 Identities=26% Similarity=0.327 Sum_probs=44.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhhcccc-hhhHHHHHHHHHhcCCceeEhHHHHHh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVG-ASRVRSLYQEAKDNAPSVVFIDELDAV 500 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~gq~-~~~l~~~f~~a~~~~p~iL~iDEid~l 500 (862)
.+++|+||+|||||+|+++|+..+ +.++..+++..+...+.... ...+..++..+.. +++|+|||++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 689999999999999999999877 45666677665443321110 0011233333332 359999999654
No 113
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.01 E-value=3.5e-06 Score=89.68 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=45.4
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|.+.+..|.+.+
T Consensus 25 l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 83 (263)
T 2olj_A 25 IDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIII 83 (263)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE
Confidence 6677888888642 2 37777888889999999999999999999998888887754
No 114
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.01 E-value=3.5e-06 Score=89.12 Aligned_cols=54 Identities=13% Similarity=0.109 Sum_probs=42.9
Q ss_pred ccccCcccccc-cc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 408 YLERGVDVKFS-DM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 408 l~~~~~s~~~~-~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
+.++++++.|+ +. + .++.+..+..++|+||||+|||||+++|+|...+..|.+.
T Consensus 5 l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~ 63 (253)
T 2nq2_C 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63 (253)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE
T ss_pred EEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 44556666665 31 2 2677888888999999999999999999999988888775
No 115
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.00 E-value=6.6e-06 Score=92.33 Aligned_cols=179 Identities=21% Similarity=0.238 Sum_probs=101.8
Q ss_pred eEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh-----hcccchhh-------HHHHHHHHHhcCCceeEhH
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASR-------VRSLYQEAKDNAPSVVFID 495 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~-----~~gq~~~~-------l~~~f~~a~~~~p~iL~iD 495 (862)
.|+|+|++|||||+++++|.... ..+++.++|+.+... .+|..... ....|+.+ ..+.+|||
T Consensus 162 ~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a---~~gtlfld 238 (387)
T 1ny5_A 162 PVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELA---DGGTLFLD 238 (387)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHT---TTSEEEEE
T ss_pred CeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeC---CCcEEEEc
Confidence 46999999999999999998754 468999998875432 22221110 12233332 34689999
Q ss_pred HHHHhhhhccCcCCCCchhHHHHHHHHHHhhccc--c---C----CCcEEEEEecCCC-------CCCCccccCCCCccc
Q 002961 496 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF--E---G----RGNVITIASTNRP-------DILDPALVRPGRFDR 559 (862)
Q Consensus 496 Eid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~--~---~----~~~vlvI~tTN~~-------~~Ld~aLlrpgRfd~ 559 (862)
||+.+... .+..|+..|+.- . + ..++.+|+|||.. ..+.+.|.. |+.
T Consensus 239 ei~~l~~~--------------~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~- 301 (387)
T 1ny5_A 239 EIGELSLE--------------AQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLG- 301 (387)
T ss_dssp SGGGCCHH--------------HHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHT-
T ss_pred ChhhCCHH--------------HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhc-
Confidence 99988554 566677766541 1 1 1357799999863 122333333 332
Q ss_pred cccCCCCCH----HhHHHHHHHHHcc----CCCC-Cccc---HHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHH
Q 002961 560 KIFIPKPGL----IGRMEILKVHARK----KPMA-DDVD---YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 627 (862)
Q Consensus 560 ~I~~~~P~~----~~R~~Il~~~l~~----~~~~-~~~d---l~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~e 627 (862)
.+.+..|.. ++...++.+++.. .... ..+. +..+....---+.+++.++++.|+..+ ....|+.+
T Consensus 302 ~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~ 378 (387)
T 1ny5_A 302 VIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS---EGKFIDRG 378 (387)
T ss_dssp TEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC---CSSEECHH
T ss_pred CCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC---CCCcCcHH
Confidence 233344444 4444555555532 1111 1233 333333321124468888888877543 34578988
Q ss_pred HHHHH
Q 002961 628 DLLQA 632 (862)
Q Consensus 628 dl~~A 632 (862)
|+...
T Consensus 379 ~l~~~ 383 (387)
T 1ny5_A 379 ELSCL 383 (387)
T ss_dssp HHHHH
T ss_pred HCcHh
Confidence 88543
No 116
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.00 E-value=2.1e-06 Score=95.76 Aligned_cols=56 Identities=20% Similarity=0.203 Sum_probs=45.2
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++. + .++.+..+..++|.||||||||||+++|+|...+..|.+...
T Consensus 12 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~ 71 (372)
T 1v43_A 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFG 71 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEEC
Confidence 5667777777642 2 367777888899999999999999999999988888887543
No 117
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.98 E-value=9.1e-06 Score=86.51 Aligned_cols=41 Identities=22% Similarity=0.190 Sum_probs=36.1
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+...
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~ 67 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYD 67 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEC
Confidence 67778888899999999999999999999988888877553
No 118
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.96 E-value=1.7e-05 Score=84.31 Aligned_cols=39 Identities=28% Similarity=0.346 Sum_probs=34.6
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+. +..++|.||||+|||||+++|+|.. +..|.+...
T Consensus 25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~ 63 (263)
T 2pjz_A 25 NLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFIN 63 (263)
T ss_dssp EEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEET
T ss_pred eEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEEC
Confidence 67778 8889999999999999999999999 888888653
No 119
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.93 E-value=3.2e-06 Score=86.25 Aligned_cols=128 Identities=20% Similarity=0.223 Sum_probs=75.4
Q ss_pred CeEEEECCCCCchhHHHHHHHhh--------cc-Cceeeeecccchhhhc----------ccchh--hHHHHHHHH--Hh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE--------AG-VNFFSISASQFVEIYV----------GVGAS--RVRSLYQEA--KD 486 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~--------l~-~~~~~i~~~~~~~~~~----------gq~~~--~l~~~f~~a--~~ 486 (862)
-.++++|+||+|||+++..++-. .+ .+++..++.++...+. ..... ....+++.+ ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 35689999999999998775332 23 4444455444332111 00000 012233321 23
Q ss_pred cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCccccccCCCC
Q 002961 487 NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKP 566 (862)
Q Consensus 487 ~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd~~I~~~~P 566 (862)
..+++|+|||++.+.+.+.. +.+. ..++..+... ...++-+|.+|++++.|+.++++ |++.++++++|
T Consensus 86 ~~~~vliIDEAq~l~~~~~~----~~e~-----~rll~~l~~~-r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~ 153 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSA----GSKI-----PENVQWLNTH-RHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASN 153 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCT----TCCC-----CHHHHGGGGT-TTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEEC
T ss_pred cCceEEEEEChhhhccCccc----cchh-----HHHHHHHHhc-CcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCc
Confidence 34679999999998543211 1111 1244444432 33456778888889999999887 99999998876
Q ss_pred CHH
Q 002961 567 GLI 569 (862)
Q Consensus 567 ~~~ 569 (862)
...
T Consensus 154 ~~~ 156 (199)
T 2r2a_A 154 KMG 156 (199)
T ss_dssp SSC
T ss_pred ccC
Confidence 543
No 120
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.93 E-value=1.2e-05 Score=84.75 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=41.8
Q ss_pred cccCccccc--cc--cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 409 LERGVDVKF--SD--MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 409 ~~~~~s~~~--~~--~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
.++++++.| ++ .+ .++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 9 ~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i 68 (247)
T 2ff7_A 9 TFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLI 68 (247)
T ss_dssp EEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred eEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 344556666 22 12 26778888889999999999999999999998888887754
No 121
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.93 E-value=1.1e-05 Score=86.18 Aligned_cols=56 Identities=14% Similarity=0.065 Sum_probs=45.2
Q ss_pred ccccCccccccc-----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD-----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~-----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++ .+ .++.+..+..++|+||||+|||||+++|+|.+.+..|.+.+.
T Consensus 17 l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~ 79 (271)
T 2ixe_A 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLD 79 (271)
T ss_dssp EEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEEC
Confidence 667777777753 12 267778888899999999999999999999998888877543
No 122
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.93 E-value=9.6e-05 Score=80.09 Aligned_cols=166 Identities=19% Similarity=0.205 Sum_probs=91.8
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCceeeeecccch------------hh---hccc---------------------c
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV------------EI---YVGV---------------------G 473 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~------------~~---~~gq---------------------~ 473 (862)
..++|+||+|+|||+|++.++...+ ..++++.... .. .++. .
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 5789999999999999999998875 4555543221 00 0000 0
Q ss_pred hhhHHHHHHHHH----hcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCC---C-
Q 002961 474 ASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP---D- 545 (862)
Q Consensus 474 ~~~l~~~f~~a~----~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~---~- 545 (862)
...+..++..+. ...|.+++|||++.+.... ...... .+..|-..++.. .++.+|.++... .
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~----~~~~~~---~~~~L~~~~~~~---~~~~~il~g~~~~~l~~ 179 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG----SRGGKE---LLALFAYAYDSL---PNLKIILTGSEVGLLHD 179 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT----TTTTHH---HHHHHHHHHHHC---TTEEEEEEESSHHHHHH
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC----ccchhh---HHHHHHHHHHhc---CCeEEEEECCcHHHHHH
Confidence 012233333332 2238899999999875310 000111 222222222322 245555554332 1
Q ss_pred -----CCCccccCCCCccccccCCCCCHHhHHHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHH
Q 002961 546 -----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVE 610 (862)
Q Consensus 546 -----~Ld~aLlrpgRfd~~I~~~~P~~~~R~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~ 610 (862)
.....+. ||+...+.+++.+.++-.+++...+...... .+.....+...+.|+. .-+..++.
T Consensus 180 ~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P-~~l~~~~~ 247 (350)
T 2qen_A 180 FLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIP-GWLVVFGV 247 (350)
T ss_dssp HHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred HHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 1122232 4666689999999999999998876543322 3345667777887754 44554443
No 123
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.93 E-value=1.6e-05 Score=79.36 Aligned_cols=26 Identities=42% Similarity=0.723 Sum_probs=22.9
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCc
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVN 456 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~ 456 (862)
.++|+||||+|||||+++|++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 57899999999999999999987543
No 124
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.93 E-value=5.4e-05 Score=78.33 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=24.5
Q ss_pred ccccCCeEEEECCCCCchhHHHHHHH
Q 002961 425 GVRIPGGILLCGPPGVGKTLLAKAVA 450 (862)
Q Consensus 425 ~i~~~~~vlL~GpnGtGKTtLakaLA 450 (862)
++..+.-++|+||||+|||||++.|+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 67888889999999999999999999
No 125
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.92 E-value=2.1e-05 Score=86.89 Aligned_cols=54 Identities=22% Similarity=0.222 Sum_probs=41.8
Q ss_pred ccCccccccc-cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 410 ERGVDVKFSD-MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 410 ~~~~s~~~~~-~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++++++.|++ .+ .++.+..+..++|.||||+|||||+++|+|...+..|.+...
T Consensus 4 ~~~l~~~y~~~~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~ 60 (348)
T 3d31_A 4 IESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLD 60 (348)
T ss_dssp EEEEEEECSSCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEEEEEEECCEEEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Confidence 3455555544 22 267777888899999999999999999999998888887653
No 126
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.92 E-value=8.8e-06 Score=88.40 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=46.1
Q ss_pred ccccCccccccc---cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD---MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~---~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++ .+ .++.+..+..++|+||||+|||||+++|++...+..|.|...
T Consensus 54 i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~ 114 (306)
T 3nh6_A 54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRID 114 (306)
T ss_dssp EEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEET
T ss_pred EEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEEC
Confidence 667788888853 12 377888888999999999999999999999998888877543
No 127
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.91 E-value=2.4e-06 Score=95.38 Aligned_cols=55 Identities=24% Similarity=0.168 Sum_probs=43.3
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++. + .++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (372)
T 1g29_1 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEE
Confidence 4455666666542 2 36777888889999999999999999999998888777754
No 128
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.90 E-value=1.8e-06 Score=95.65 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=42.7
Q ss_pred ccccCccccccccc------cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSDMY------RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~~------~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++.. .++.+..+..++|.||||+|||||+++|+|...+..|.+..
T Consensus 4 l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 64 (353)
T 1oxx_K 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64 (353)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 44556666665421 26777788889999999999999999999998888787754
No 129
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.86 E-value=1.8e-05 Score=90.59 Aligned_cols=127 Identities=17% Similarity=0.213 Sum_probs=97.8
Q ss_pred CceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEe---------cC---CCCCCCccccCCCC
Q 002961 489 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAS---------TN---RPDILDPALVRPGR 556 (862)
Q Consensus 489 p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~t---------TN---~~~~Ld~aLlrpgR 556 (862)
|.|++|||++.+... .++.|+..|+.... .++++++ |+ .+..+++.+++ |
T Consensus 296 ~~VliIDEa~~l~~~--------------a~~aLlk~lEe~~~--~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R 357 (456)
T 2c9o_A 296 PGVLFVDEVHMLDIE--------------CFTYLHRALESSIA--PIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--R 357 (456)
T ss_dssp ECEEEEESGGGCBHH--------------HHHHHHHHTTSTTC--CEEEEEECCSEEECBTTSSCEEETTCCHHHHT--T
T ss_pred ceEEEEechhhcCHH--------------HHHHHHHHhhccCC--CEEEEecCCccccccccccccccccCChhHHh--h
Confidence 469999999998543 78889988886544 3555555 33 26788999999 8
Q ss_pred ccccccCCCCCHHhHHHHHHHHHccCCC-CCcccHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 002961 557 FDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMT-DGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 634 (862)
Q Consensus 557 fd~~I~~~~P~~~~R~~Il~~~l~~~~~-~~~~dl~~lA~~t-~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~ 634 (862)
|.. +.|++|+.++..++++..+..... .++..+..++... .| +++...++++.|...|..++...|+.+|+..++.
T Consensus 358 ~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~ 435 (456)
T 2c9o_A 358 VMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEISE 435 (456)
T ss_dssp EEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHH
Confidence 875 699999999999999988753322 2333455667666 55 7777889999998889989999999999999986
Q ss_pred H
Q 002961 635 I 635 (862)
Q Consensus 635 ~ 635 (862)
.
T Consensus 436 ~ 436 (456)
T 2c9o_A 436 L 436 (456)
T ss_dssp H
T ss_pred H
Confidence 4
No 130
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.83 E-value=2.3e-05 Score=81.47 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=43.8
Q ss_pred ccccCccccccc----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|+. .+ .++.+..+..++|+||||+|||||+++|+|...+..|.+...
T Consensus 7 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 68 (229)
T 2pze_A 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS 68 (229)
T ss_dssp EEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEEC
T ss_pred EEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEEC
Confidence 445566666631 12 267788888899999999999999999999998888887654
No 131
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.81 E-value=2.6e-05 Score=87.45 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=42.6
Q ss_pred ccccCcccccc--cc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFS--DM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~--~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|. +. + .++.+..+..+.|+||||||||||+++|+|... ..|.|..
T Consensus 20 i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i 79 (390)
T 3gd7_A 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQI 79 (390)
T ss_dssp EEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEE
T ss_pred EEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEE
Confidence 66778888883 21 2 377888888899999999999999999999776 6666643
No 132
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.81 E-value=1.1e-05 Score=85.02 Aligned_cols=40 Identities=33% Similarity=0.353 Sum_probs=35.5
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|+||||+|||||+++|+|.+.+. |.+.+.
T Consensus 20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~ 59 (249)
T 2qi9_C 20 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFA 59 (249)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEET
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEEC
Confidence 5777888889999999999999999999999888 888654
No 133
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.81 E-value=9.3e-06 Score=86.24 Aligned_cols=76 Identities=21% Similarity=0.257 Sum_probs=49.1
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCc-eeeeecccchhh--------hccc-----chhhHHHHHHHHHhcC
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN-FFSISASQFVEI--------YVGV-----GASRVRSLYQEAKDNA 488 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~-~~~i~~~~~~~~--------~~gq-----~~~~l~~~f~~a~~~~ 488 (862)
++.+..+..++|+||||+|||||+++|++.+.+. .+.+...+.... ++.+ ....++..+..+....
T Consensus 19 ~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~ 98 (261)
T 2eyu_A 19 ELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALRED 98 (261)
T ss_dssp HGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHC
T ss_pred HHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhC
Confidence 4446667779999999999999999999987654 444432110000 1111 1123455555555668
Q ss_pred CceeEhHHHH
Q 002961 489 PSVVFIDELD 498 (862)
Q Consensus 489 p~iL~iDEid 498 (862)
|+++++||..
T Consensus 99 p~illlDEp~ 108 (261)
T 2eyu_A 99 PDVIFVGEMR 108 (261)
T ss_dssp CSEEEESCCC
T ss_pred CCEEEeCCCC
Confidence 9999999984
No 134
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.79 E-value=1.1e-05 Score=94.41 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=43.6
Q ss_pred cccccCccccccccc---cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 407 QYLERGVDVKFSDMY---RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 407 ~l~~~~~s~~~~~~~---~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
.+.++++++.|++.. .++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 287 ~l~~~~l~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~ 345 (538)
T 1yqt_A 287 LVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW 345 (538)
T ss_dssp EEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC
T ss_pred EEEEeeEEEEECCEEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 366777777675521 24556888999999999999999999999988777776654
No 135
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.78 E-value=2.9e-05 Score=101.58 Aligned_cols=118 Identities=23% Similarity=0.249 Sum_probs=77.1
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh----hcc------------cchhhHHHHHHHH
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI----YVG------------VGASRVRSLYQEA 484 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~----~~g------------q~~~~l~~~f~~a 484 (862)
.++..+..++|+||||||||+|+.+++.+. +....+++....... .+| .....+..++..+
T Consensus 1422 GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lv 1501 (2050)
T 3cmu_A 1422 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 1501 (2050)
T ss_dssp SSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHH
Confidence 358889999999999999999999997764 445666665543211 111 1123345566667
Q ss_pred HhcCCceeEhHHHHHhhhhc---cCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEec
Q 002961 485 KDNAPSVVFIDELDAVGRER---GLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST 541 (862)
Q Consensus 485 ~~~~p~iL~iDEid~l~~~~---~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tT 541 (862)
+...|++|+||+++.+.+.. +..+++........++++|..|.++....++++|.+.
T Consensus 1502 r~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1502 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 78899999999999886532 2112222211233567777777777666677776664
No 136
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.78 E-value=1.7e-05 Score=92.61 Aligned_cols=56 Identities=23% Similarity=0.259 Sum_probs=44.0
Q ss_pred ccccCccccccccc---cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSDMY---RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~~~---~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+..+++++.|++.. .++.+..+..++|+||||+|||||+++|+|...+..|.+...
T Consensus 270 l~~~~l~~~~~~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 328 (538)
T 3ozx_A 270 MKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPE 328 (538)
T ss_dssp EEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESS
T ss_pred EEEcceEEEECCEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 55667776665522 256678889999999999999999999999988877777543
No 137
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.76 E-value=3.8e-05 Score=103.60 Aligned_cols=130 Identities=16% Similarity=0.124 Sum_probs=91.0
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccC
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 506 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~ 506 (862)
....++++.||+|||||++++.+|..+|.+++.++|++... ...+..+|..+...+ +.+++||++.+...-
T Consensus 643 ~~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~~~ev-- 713 (2695)
T 4akg_A 643 HQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRLDEKV-- 713 (2695)
T ss_dssp HTTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCHHH--
T ss_pred HhCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhcChHH--
Confidence 44567899999999999999999999999999999987332 344566776665544 589999998764321
Q ss_pred cCCCCchhHHHHHHHH----HHhhcc-----------ccCCCcEEEEEecCC----CCCCCccccCCCCccccccCCCCC
Q 002961 507 IKGSGGQERDATLNQL----LVCLDG-----------FEGRGNVITIASTNR----PDILDPALVRPGRFDRKIFIPKPG 567 (862)
Q Consensus 507 ~~~Sgge~~r~~l~~L----L~~Ld~-----------~~~~~~vlvI~tTN~----~~~Ld~aLlrpgRfd~~I~~~~P~ 567 (862)
-..++.. +..+.. +.-...+.|++|.|+ ...||++|.+ || +.|.+..|+
T Consensus 714 ---------Ls~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd 781 (2695)
T 4akg_A 714 ---------LSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQ 781 (2695)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCC
T ss_pred ---------HHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCC
Confidence 1122222 222211 111235678888884 3468999988 77 479999999
Q ss_pred HHhHHHHHHH
Q 002961 568 LIGRMEILKV 577 (862)
Q Consensus 568 ~~~R~~Il~~ 577 (862)
.+...+|+-.
T Consensus 782 ~~~i~ei~l~ 791 (2695)
T 4akg_A 782 SGTIAEMILQ 791 (2695)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988888643
No 138
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.74 E-value=4e-05 Score=85.38 Aligned_cols=165 Identities=19% Similarity=0.296 Sum_probs=93.6
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccC--ceeeeecccchhh-----hcccchhh-------HHHHHHHHHhcCCceeEhH
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISASQFVEI-----YVGVGASR-------VRSLYQEAKDNAPSVVFID 495 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~--~~~~i~~~~~~~~-----~~gq~~~~-------l~~~f~~a~~~~p~iL~iD 495 (862)
..++|+|++||||++++++|....+. .++.++|+.+... .+|...+. -...|+.+ ..+.||+|
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a---~~gtlfld 229 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELA---DQGTLFLD 229 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHT---TTSEEEEE
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhc---CCCeEEec
Confidence 34899999999999999999876533 2888888865332 22221110 01234332 34579999
Q ss_pred HHHHhhhhccCcCCCCchhHHHHHHHHHHhhccc--c---C----CCcEEEEEecCCC-------CCCCccccCCCCccc
Q 002961 496 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF--E---G----RGNVITIASTNRP-------DILDPALVRPGRFDR 559 (862)
Q Consensus 496 Eid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~--~---~----~~~vlvI~tTN~~-------~~Ld~aLlrpgRfd~ 559 (862)
||+.+... .+..|+..|+.- . + ...+-+|++||.. ..+.+.|.. |+..
T Consensus 230 ei~~l~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~ 293 (368)
T 3dzd_A 230 EVGELDQR--------------VQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLSV 293 (368)
T ss_dssp TGGGSCHH--------------HHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTS
T ss_pred ChhhCCHH--------------HHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCC
Confidence 99998654 667777777532 1 1 1246788888752 122233333 3332
Q ss_pred -cccCCCCCH--HhHHHHHHHHHccC----CCC-Cccc---HHHHHhhc-CCCCHHHHHHHHHHHHH
Q 002961 560 -KIFIPKPGL--IGRMEILKVHARKK----PMA-DDVD---YLAVASMT-DGMVGAELANIVEVAAI 614 (862)
Q Consensus 560 -~I~~~~P~~--~~R~~Il~~~l~~~----~~~-~~~d---l~~lA~~t-~G~s~adI~~lv~~A~~ 614 (862)
.|.+|+... ++...++.+++... ... ..+. +..|.... +| +.+++.++++.++.
T Consensus 294 ~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpG-NvreL~n~i~~~~~ 359 (368)
T 3dzd_A 294 FQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKG-NVRELKNLIERAVI 359 (368)
T ss_dssp EEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTT-HHHHHHHHHHHHHH
T ss_pred eEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCc-HHHHHHHHHHHHHH
Confidence 355665544 55666666666331 111 1222 33344433 23 34677777777664
No 139
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.74 E-value=1.5e-05 Score=83.47 Aligned_cols=56 Identities=21% Similarity=0.149 Sum_probs=45.1
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|...+..|.+...
T Consensus 7 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 66 (240)
T 1ji0_A 7 LEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFN 66 (240)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 5566777777542 2 267778888899999999999999999999998888888653
No 140
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.73 E-value=4.6e-05 Score=80.82 Aligned_cols=54 Identities=17% Similarity=0.047 Sum_probs=41.9
Q ss_pred ccccCccccccc-----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSD-----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~-----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++ .+ .++.+..+..++|+||||+|||||+++|+|...+ .|.+..
T Consensus 18 l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i 78 (260)
T 2ghi_A 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKI 78 (260)
T ss_dssp EEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEE
T ss_pred EEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEE
Confidence 556677776653 12 2677788888999999999999999999998764 677754
No 141
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.73 E-value=4.7e-05 Score=77.64 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=25.6
Q ss_pred ccccCCeEEEECCCCCchhHHHHHHHhhc
Q 002961 425 GVRIPGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 425 ~i~~~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
++..+..++|+||||+|||||++.|++.+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56777889999999999999999999754
No 142
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.72 E-value=1.7e-05 Score=94.07 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=43.6
Q ss_pred cccccCccccccccc---cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 407 QYLERGVDVKFSDMY---RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 407 ~l~~~~~s~~~~~~~---~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
.+.++++++.|++.. .++.+..+..++|+||||+|||||+++|+|.+.+..|.+..
T Consensus 357 ~l~~~~l~~~~~~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~ 415 (607)
T 3bk7_A 357 LVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW 415 (607)
T ss_dssp EEEECCEEEECSSCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC
T ss_pred EEEEeceEEEecceEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 366777777776531 24556788899999999999999999999988777676653
No 143
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.71 E-value=1.8e-05 Score=83.79 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=45.5
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|...+..|.+...
T Consensus 8 l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~ 67 (257)
T 1g6h_A 8 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 67 (257)
T ss_dssp EEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 5666777777642 2 377788888899999999999999999999998888888654
No 144
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.71 E-value=4.1e-05 Score=82.54 Aligned_cols=41 Identities=24% Similarity=0.204 Sum_probs=35.9
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+...
T Consensus 58 sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~ 98 (290)
T 2bbs_A 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS 98 (290)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC
Confidence 57777888899999999999999999999988888877654
No 145
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.70 E-value=1e-05 Score=80.00 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=22.5
Q ss_pred ccccccCCeEEEECCCCCchhHHHHH
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKA 448 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLaka 448 (862)
++.+..+.-++|+||||+|||||+++
T Consensus 3 sl~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 3 KLTIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEESSEEEEEECCTTSCHHHHHHH
T ss_pred cccCCCCEEEEEECCCCCCHHHHHHH
Confidence 35667778899999999999999994
No 146
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.69 E-value=2e-05 Score=83.73 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=45.1
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|...+..|.+...
T Consensus 7 l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~ 66 (262)
T 1b0u_A 7 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVN 66 (262)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 5566777777542 2 367778888899999999999999999999998888887653
No 147
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.67 E-value=3.6e-05 Score=78.59 Aligned_cols=30 Identities=30% Similarity=0.303 Sum_probs=26.4
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhc
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
-++..+.-++|+||||+|||||++.|++..
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 367778889999999999999999999854
No 148
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.66 E-value=5.1e-06 Score=90.36 Aligned_cols=70 Identities=24% Similarity=0.305 Sum_probs=43.7
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhcc----Cceeeeecccchhhhcccc-hhhHHHHHHHHHhcCCceeEhHHHHHh
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAG----VNFFSISASQFVEIYVGVG-ASRVRSLYQEAKDNAPSVVFIDELDAV 500 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~----~~~~~i~~~~~~~~~~gq~-~~~l~~~f~~a~~~~p~iL~iDEid~l 500 (862)
+.+++|+||+|||||+|+.+|+..+. .++.++++..+...+.... ...+...+..+. .+++|+|||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 57899999999999999999998654 5666677665544322111 011112222222 3469999999543
No 149
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.65 E-value=8.2e-05 Score=81.52 Aligned_cols=177 Identities=14% Similarity=0.093 Sum_probs=111.3
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccC----ceeeeecccchhhhcccchhhHHHHHHHHHh----cCCceeEhHHHH
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGV----NFFSISASQFVEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELD 498 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~----~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~----~~p~iL~iDEid 498 (862)
+.+..++|+||.|.||++.++.|+..+.. +...+... + ...++.+++.+.. ....++++||++
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 34557899999999999999999886521 11111111 1 1234555555432 235689999987
Q ss_pred H-hhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCC------CCCCccccCCCCccccccCCCCCHHhH
Q 002961 499 A-VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP------DILDPALVRPGRFDRKIFIPKPGLIGR 571 (862)
Q Consensus 499 ~-l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~------~~Ld~aLlrpgRfd~~I~~~~P~~~~R 571 (862)
. +... ..+.|+..++...+ ++++|.+|+.+ ..+.+++.+.| .++.|.+++..+.
T Consensus 87 ~kl~~~--------------~~~aLl~~le~p~~--~~~~il~~~~~~~~~~~~k~~~~i~sr~---~~~~~~~l~~~~l 147 (343)
T 1jr3_D 87 NGPNAA--------------INEQLLTLTGLLHD--DLLLIVRGNKLSKAQENAAWFTALANRS---VQVTCQTPEQAQL 147 (343)
T ss_dssp SCCCTT--------------HHHHHHHHHTTCBT--TEEEEEEESCCCTTTTTSHHHHHHTTTC---EEEEECCCCTTHH
T ss_pred CCCChH--------------HHHHHHHHHhcCCC--CeEEEEEcCCCChhhHhhHHHHHHHhCc---eEEEeeCCCHHHH
Confidence 6 5322 56778877775432 44444444332 34566777744 3788999999999
Q ss_pred HHHHHHHHccCCCC-CcccHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 002961 572 MEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 635 (862)
Q Consensus 572 ~~Il~~~l~~~~~~-~~~dl~~lA~~t~G~s~adI~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 635 (862)
...++..+....+. ++..+..++..+.| +.+++.+.++..... .+...||.+++...+..
T Consensus 148 ~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~---~~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 148 PRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLL---WPDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHH---CTTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHh---cCCCCCCHHHHHHHHhh
Confidence 99998888766543 23345566666655 555566666655432 23457999999988754
No 150
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.65 E-value=2.4e-05 Score=85.94 Aligned_cols=77 Identities=22% Similarity=0.283 Sum_probs=54.1
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhh----------hcccchhhHHHHHHHHHhcCCcee
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI----------YVGVGASRVRSLYQEAKDNAPSVV 492 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~----------~~gq~~~~l~~~f~~a~~~~p~iL 492 (862)
++.+..+..++|+||||+|||||+++|++...+..+.+...+.... ++.++....+..+..+....|+++
T Consensus 165 ~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~il 244 (330)
T 2pt7_A 165 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRI 244 (330)
T ss_dssp HHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEE
T ss_pred hhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEE
Confidence 5667778889999999999999999999998776666544321110 221122234556666667789999
Q ss_pred EhHHHHH
Q 002961 493 FIDELDA 499 (862)
Q Consensus 493 ~iDEid~ 499 (862)
++||...
T Consensus 245 ildE~~~ 251 (330)
T 2pt7_A 245 ILGELRS 251 (330)
T ss_dssp EECCCCS
T ss_pred EEcCCCh
Confidence 9999743
No 151
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.63 E-value=5.5e-05 Score=89.63 Aligned_cols=56 Identities=18% Similarity=0.165 Sum_probs=46.2
Q ss_pred ccccCccccccc---cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD---MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~---~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++ .+ .++.+..++.++|+||||+|||||+++|+|...+..|.+...
T Consensus 355 i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~ 415 (598)
T 3qf4_B 355 IEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVD 415 (598)
T ss_dssp EEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEET
T ss_pred EEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEEC
Confidence 667788888853 12 367788888899999999999999999999998888887654
No 152
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.61 E-value=9e-05 Score=87.48 Aligned_cols=55 Identities=18% Similarity=0.150 Sum_probs=44.8
Q ss_pred ccccCccccccc----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFSD----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+.++++++.|++ .+ .++.+..++.++|+||||+|||||+++|+|...+..|.+..
T Consensus 342 i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 402 (582)
T 3b5x_A 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL 402 (582)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 667788888863 12 27777888889999999999999999999998887777654
No 153
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.60 E-value=6.5e-05 Score=88.94 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=45.5
Q ss_pred ccccCccccccc-----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD-----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~-----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++ .+ .++.+..++.++|+||||+|||||+++|+|...+..|.+...
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~ 404 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLD 404 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEET
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEEC
Confidence 566788887753 22 377788888899999999999999999999998888877543
No 154
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.57 E-value=3.2e-05 Score=80.82 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=42.6
Q ss_pred ccccCccccccc----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|+. .+ .++.+..+..++|+||||+|||||+++|+|...+..|.+...
T Consensus 4 l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~ 65 (237)
T 2cbz_A 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIK 65 (237)
T ss_dssp EEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEEC
T ss_pred EEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 344556666641 12 267788888899999999999999999999988777777553
No 155
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.54 E-value=3.3e-05 Score=80.96 Aligned_cols=40 Identities=18% Similarity=0.104 Sum_probs=34.7
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
++.+..+..++|+||||+|||||+++|+|...+..|.+..
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 61 (243)
T 1mv5_A 22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61 (243)
T ss_dssp EEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEE
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 6777888889999999999999999999998777776654
No 156
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.53 E-value=9.4e-05 Score=87.32 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=46.1
Q ss_pred ccccCccccccc--c--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD--M--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~--~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++ . + .++.+..++.++|+||||+|||||+++|+|...+..|.+...
T Consensus 342 i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~ 403 (582)
T 3b60_A 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMD 403 (582)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEET
T ss_pred EEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEEC
Confidence 677788888862 1 2 377788888899999999999999999999998888877543
No 157
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.51 E-value=6.7e-05 Score=88.50 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=46.3
Q ss_pred ccccCccccccc----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+..+++++.|++ .+ .++.+..++.++|+||||+|||||+++|+|...+..|.+...
T Consensus 340 i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~ 401 (578)
T 4a82_A 340 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILID 401 (578)
T ss_dssp EEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEET
T ss_pred EEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEEC
Confidence 667788888853 12 277788888899999999999999999999998888888654
No 158
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.51 E-value=5.3e-05 Score=89.55 Aligned_cols=56 Identities=13% Similarity=0.138 Sum_probs=46.3
Q ss_pred ccccCccccccc----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++ .+ .++.+.+++.++|+||||+|||||+++|+|...+..|.+...
T Consensus 342 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~ 403 (587)
T 3qf4_A 342 VSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVD 403 (587)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEES
T ss_pred EEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEC
Confidence 677788888843 12 377888889999999999999999999999998888887653
No 159
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.51 E-value=4.4e-05 Score=77.85 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=23.8
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCc
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVN 456 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~ 456 (862)
.+++|+|||||||||++.+|+..+...
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~ 85 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGA 85 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 569999999999999999999987543
No 160
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.50 E-value=4.3e-05 Score=80.49 Aligned_cols=55 Identities=25% Similarity=0.164 Sum_probs=41.9
Q ss_pred ccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhh--ccCceeeeec
Q 002961 408 YLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGE--AGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~--l~~~~~~i~~ 462 (862)
+.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|. ..+..|.+..
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~ 64 (250)
T 2d2e_A 4 LEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILL 64 (250)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEE
T ss_pred EEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEE
Confidence 4455666666542 2 2677888888999999999999999999997 5666677654
No 161
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.50 E-value=4.5e-05 Score=81.16 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=43.9
Q ss_pred cccccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHhhc--cCceeeeecc
Q 002961 407 QYLERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA--GVNFFSISAS 463 (862)
Q Consensus 407 ~l~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l--~~~~~~i~~~ 463 (862)
.+.++++++.|++. + .++.+..+..++|+||||+|||||+++|+|.. .+..|.+...
T Consensus 20 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 82 (267)
T 2zu0_C 20 MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 82 (267)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEEC
Confidence 36677888877642 2 26778888889999999999999999999973 4556766543
No 162
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.45 E-value=0.0001 Score=74.71 Aligned_cols=39 Identities=23% Similarity=0.168 Sum_probs=31.3
Q ss_pred ccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 425 GVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 425 ~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++..+.-++|+||||+|||||++.|++..+...++++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 567778899999999999999999998445556666544
No 163
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.42 E-value=0.00013 Score=80.84 Aligned_cols=76 Identities=18% Similarity=0.309 Sum_probs=47.5
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCc-eee-eecccchhh-------hccc-----chhhHHHHHHHHHhcC
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN-FFS-ISASQFVEI-------YVGV-----GASRVRSLYQEAKDNA 488 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~-~~~-i~~~~~~~~-------~~gq-----~~~~l~~~f~~a~~~~ 488 (862)
++....+..++|+||||+|||||+++|++.+.+. -+. +...+.... ++.+ ....+...+..+....
T Consensus 117 ~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 117 RVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALRED 196 (356)
T ss_dssp HHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSC
T ss_pred HHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhC
Confidence 4444555569999999999999999999987543 111 111111100 1111 1122355666677788
Q ss_pred CceeEhHHHH
Q 002961 489 PSVVFIDELD 498 (862)
Q Consensus 489 p~iL~iDEid 498 (862)
|+++++||+.
T Consensus 197 PdvillDEp~ 206 (356)
T 3jvv_A 197 PDIILVGEMR 206 (356)
T ss_dssp CSEEEESCCC
T ss_pred cCEEecCCCC
Confidence 9999999984
No 164
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.40 E-value=0.00021 Score=91.92 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=46.8
Q ss_pred ccccCccccccc---c--c--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD---M--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~---~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|+. . + .++.++++..++|+||+|+|||||+++|.+...+..|.+...
T Consensus 416 I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~id 478 (1321)
T 4f4c_A 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITID 478 (1321)
T ss_dssp EEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEET
T ss_pred EEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCC
Confidence 677888888853 1 2 377888888899999999999999999999999988888654
No 165
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.39 E-value=0.00012 Score=75.29 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=25.8
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhh
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-++..+.-++|+||||+|||||++.|++.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35777788999999999999999999984
No 166
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.39 E-value=0.00025 Score=96.42 Aligned_cols=143 Identities=18% Similarity=0.259 Sum_probs=86.5
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhc-cCceeeeecccchhhhcccchhhHHHHHHHH----Hh------------
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEA-GVNFFSISASQFVEIYVGVGASRVRSLYQEA----KD------------ 486 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l-~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a----~~------------ 486 (862)
.-+..+..|+|+||+|||||.++......+ +.++..++++...+ ...+...++.. +.
T Consensus 1299 ~ll~~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~ 1372 (3245)
T 3vkg_A 1299 AWLSEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQL 1372 (3245)
T ss_dssp HHHHTTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESST
T ss_pred HHHHCCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcC
Confidence 334567789999999999998876655444 44556666654221 12233333321 00
Q ss_pred cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhcccc-------CCCcEEEEEecCCCC-----CCCccccCC
Q 002961 487 NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-------GRGNVITIASTNRPD-----ILDPALVRP 554 (862)
Q Consensus 487 ~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~-------~~~~vlvI~tTN~~~-----~Ld~aLlrp 554 (862)
....|+|+||++.-..+. -|.+..-..+.+++..-.-+. .-.++.+|+|+|++. .+++.++|
T Consensus 1373 Gk~~VlFiDDiNmp~~D~-----yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r- 1446 (3245)
T 3vkg_A 1373 GKWLVVFCDEINLPSTDK-----YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR- 1446 (3245)
T ss_dssp TCEEEEEETTTTCCCCCT-----TSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT-
T ss_pred CceEEEEecccCCCCccc-----cccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh-
Confidence 112488999996432111 122233334444443211011 114578999999874 48999999
Q ss_pred CCccccccCCCCCHHhHHHHHHHHHc
Q 002961 555 GRFDRKIFIPKPGLIGRMEILKVHAR 580 (862)
Q Consensus 555 gRfd~~I~~~~P~~~~R~~Il~~~l~ 580 (862)
||. ++.++.|+.++...|+..++.
T Consensus 1447 -~F~-vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1447 -HAP-ILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp -TCC-EEECCCCCHHHHHHHHHHHHH
T ss_pred -hce-EEEeCCCCHHHHHHHHHHHHH
Confidence 887 699999999999999876553
No 167
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.37 E-value=0.00025 Score=78.51 Aligned_cols=117 Identities=16% Similarity=0.172 Sum_probs=65.0
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh-------------hccc--chhhH-HHHHHHH
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-------------YVGV--GASRV-RSLYQEA 484 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~-------------~~gq--~~~~l-~~~f~~a 484 (862)
-|+..+.-++|+||||+|||||+..++..+ +..+.+++....... ++.+ ....+ ..+...+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~ 135 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELV 135 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence 356677779999999999999999999865 345556655432110 1111 11111 1222223
Q ss_pred HhcCCceeEhHHHHHhhhhccCcCCCCchh----HHHHHHHHHHhhccccCCCcEEEEEec
Q 002961 485 KDNAPSVVFIDELDAVGRERGLIKGSGGQE----RDATLNQLLVCLDGFEGRGNVITIAST 541 (862)
Q Consensus 485 ~~~~p~iL~iDEid~l~~~~~~~~~Sgge~----~r~~l~~LL~~Ld~~~~~~~vlvI~tT 541 (862)
+...++++++|.+..+.+...+.+. .|+. ....+..++..|..+....++.||.+.
T Consensus 136 ~~~~~dlvVIDSi~~l~~~~el~g~-~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~in 195 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAALVPRAEIEGA-MGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTN 195 (356)
T ss_dssp HTSCCSEEEEECTTTCCCHHHHTTC-CCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEE
T ss_pred hhcCCCeEEehHhhhhcChhhhccc-chhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3467899999998777542111111 1221 122455566656555444556666653
No 168
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.32 E-value=8.9e-05 Score=72.65 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=33.1
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+..+..++|.||||+|||||+++|++.+ +..+.+...
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~ 66 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSP 66 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCC
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEEC
Confidence 5666777789999999999999999999998 666666543
No 169
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.32 E-value=0.00022 Score=83.30 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=36.6
Q ss_pred cCcccccccc---cccc-ccccCCeEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 411 RGVDVKFSDM---YRRR-GVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 411 ~~~s~~~~~~---~~~l-~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
+++++.|++. ..++ .+..++.++|+||||+|||||+++|+|.+.+..|.
T Consensus 25 ~~ls~~yg~~~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp CCEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred cCcEEEECCccccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 4666666542 2233 46788889999999999999999999987655444
No 170
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.30 E-value=0.00018 Score=79.48 Aligned_cols=79 Identities=23% Similarity=0.258 Sum_probs=48.9
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh----hccc-----------chhhHHHHHH-HH
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI----YVGV-----------GASRVRSLYQ-EA 484 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~----~~gq-----------~~~~l~~~f~-~a 484 (862)
-|+..+.-++|+||||+|||||+..++..+ +....+++....... .+|. ....+..+.. .+
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 467777789999999999999999988654 345555654432111 1111 1111122222 22
Q ss_pred HhcCCceeEhHHHHHhhh
Q 002961 485 KDNAPSVVFIDELDAVGR 502 (862)
Q Consensus 485 ~~~~p~iL~iDEid~l~~ 502 (862)
....|+++++|++..+..
T Consensus 136 ~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 136 RSGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTTCCSEEEEECGGGCCC
T ss_pred hcCCCCEEEEcChHhhcc
Confidence 345689999999988763
No 171
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.23 E-value=0.00036 Score=82.60 Aligned_cols=49 Identities=24% Similarity=0.224 Sum_probs=38.4
Q ss_pred cCcccccccc---cccc-ccccCCeEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 411 RGVDVKFSDM---YRRR-GVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 411 ~~~s~~~~~~---~~~l-~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
+++++.|++. ..++ .+..+..++|+||||+|||||+++|+|.+.+..|.
T Consensus 95 ~~ls~~yg~~~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp GSEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred CCeEEEECCCCeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 6777777643 2233 46677889999999999999999999988766655
No 172
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.00061 Score=80.63 Aligned_cols=36 Identities=28% Similarity=0.293 Sum_probs=31.0
Q ss_pred ccccCCeEEEECCCCCchhHHHHHHHhhccCceeee
Q 002961 425 GVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI 460 (862)
Q Consensus 425 ~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i 460 (862)
.+..+..++|+||||+|||||+++|+|.+.+..|.+
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 345677799999999999999999999988777766
No 173
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.20 E-value=0.00018 Score=92.30 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=46.7
Q ss_pred ccccCccccccc-----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD-----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~-----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++ .+ .++.+.++..++|+||||+|||||+++|++...+..|.+...
T Consensus 388 i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~ 450 (1284)
T 3g5u_A 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSID 450 (1284)
T ss_dssp EEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEET
T ss_pred EEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 677888888853 12 278888889999999999999999999999998888887654
No 174
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.15 E-value=0.00012 Score=81.70 Aligned_cols=77 Identities=22% Similarity=0.299 Sum_probs=48.7
Q ss_pred cccccccCCeEEEECCCCCchhHHHHHHHhhccCc-eeeee-cccchh-------hhccc-----chhhHHHHHHHHHhc
Q 002961 422 RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN-FFSIS-ASQFVE-------IYVGV-----GASRVRSLYQEAKDN 487 (862)
Q Consensus 422 ~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~-~~~i~-~~~~~~-------~~~gq-----~~~~l~~~f~~a~~~ 487 (862)
.++.+..+..++|+||||+|||||+++|++.+.+. .+.+. .+.... .++.| ....+...+..+...
T Consensus 129 ~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~ 208 (372)
T 2ewv_A 129 LELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALRE 208 (372)
T ss_dssp HHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTS
T ss_pred HHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhh
Confidence 34456666779999999999999999999987554 34331 111000 12222 222234455555556
Q ss_pred CCceeEhHHHH
Q 002961 488 APSVVFIDELD 498 (862)
Q Consensus 488 ~p~iL~iDEid 498 (862)
.|+++++||+.
T Consensus 209 ~pd~illdE~~ 219 (372)
T 2ewv_A 209 DPDVIFVGEMR 219 (372)
T ss_dssp CCSEEEESCCC
T ss_pred CcCEEEECCCC
Confidence 89999999984
No 175
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.11 E-value=0.00026 Score=70.31 Aligned_cols=37 Identities=32% Similarity=0.387 Sum_probs=28.8
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+..+..++|+||||+|||||++.|++..+...+.++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~ 42 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence 4556678999999999999999999985544445543
No 176
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.11 E-value=0.0003 Score=86.92 Aligned_cols=43 Identities=21% Similarity=0.420 Sum_probs=34.1
Q ss_pred cccCcccccccc--c--cccccccCCeEEEECCCCCchhHHHHHHHh
Q 002961 409 LERGVDVKFSDM--Y--RRRGVRIPGGILLCGPPGVGKTLLAKAVAG 451 (862)
Q Consensus 409 ~~~~~s~~~~~~--~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~ 451 (862)
...++++.|++. + .++.+..+..++|+||||+|||||+++|++
T Consensus 437 ~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 437 CNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 334666677642 2 377888889999999999999999999995
No 177
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.11 E-value=0.00048 Score=76.10 Aligned_cols=31 Identities=29% Similarity=0.282 Sum_probs=27.9
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
..++..+.-+.|+||||+|||||++.|++..
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4677888889999999999999999999976
No 178
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.10 E-value=0.00034 Score=89.88 Aligned_cols=56 Identities=16% Similarity=0.122 Sum_probs=46.3
Q ss_pred ccccCccccccc-----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD-----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~-----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++ .+ .++.+++++.+.|+||||+|||||+++|++...+..|.+...
T Consensus 1031 i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~ 1093 (1284)
T 3g5u_A 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLD 1093 (1284)
T ss_dssp EEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESS
T ss_pred EEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEEC
Confidence 667788888853 12 378888899999999999999999999999998888887654
No 179
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.08 E-value=0.00052 Score=80.17 Aligned_cols=32 Identities=38% Similarity=0.336 Sum_probs=26.8
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCceeee
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI 460 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i 460 (862)
+.-++|+||||+|||||+++|+|.+.+..|.+
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGEIIPNFGDP 56 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence 34588999999999999999999876665544
No 180
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.06 E-value=0.00089 Score=91.22 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=88.2
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhhcccchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccC
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 506 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~gq~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~ 506 (862)
....+..+.||.|||||.+++.+|..+|.+++.++|++... ...+..+|..+... .+..++||++.+-...
T Consensus 602 ~~~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl~~~v-- 672 (3245)
T 3vkg_A 602 ESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRLEERI-- 672 (3245)
T ss_dssp HTTCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCHHH--
T ss_pred HhcCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcCCHHH--
Confidence 34556789999999999999999999999999999987332 23455666666554 3578999998764321
Q ss_pred cCCCCchhHHHHHHHHHHhh----c----------c--ccCCCcEEEEEecCC----CCCCCccccCCCCccccccCCCC
Q 002961 507 IKGSGGQERDATLNQLLVCL----D----------G--FEGRGNVITIASTNR----PDILDPALVRPGRFDRKIFIPKP 566 (862)
Q Consensus 507 ~~~Sgge~~r~~l~~LL~~L----d----------~--~~~~~~vlvI~tTN~----~~~Ld~aLlrpgRfd~~I~~~~P 566 (862)
-.++...+..| . + +.-+..+.++.|.|+ ...||++|.. ||- .|.+..|
T Consensus 673 ---------LSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr-~v~m~~P 740 (3245)
T 3vkg_A 673 ---------LSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFR-SMAMIKP 740 (3245)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TEE-EEECCSC
T ss_pred ---------HHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hcE-EEEEeCC
Confidence 11222212111 1 1 111235778888884 3568999988 664 6999999
Q ss_pred CHHhHHHHHH
Q 002961 567 GLIGRMEILK 576 (862)
Q Consensus 567 ~~~~R~~Il~ 576 (862)
|.+...+|+-
T Consensus 741 d~~~i~ei~L 750 (3245)
T 3vkg_A 741 DREMIAQVML 750 (3245)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9988888763
No 181
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.02 E-value=0.00032 Score=70.59 Aligned_cols=37 Identities=35% Similarity=0.336 Sum_probs=28.5
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
++.+..+..|+|+|++|+||||+++.|++.++.+++.
T Consensus 19 ~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~ 55 (199)
T 3vaa_A 19 YFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFID 55 (199)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 3556667789999999999999999999998877643
No 182
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.00 E-value=0.00026 Score=91.13 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=46.1
Q ss_pred ccccCccccccc-----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 408 YLERGVDVKFSD-----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 408 l~~~~~s~~~~~-----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.++++++.|++ .+ .++.++++..|+|+|++|+|||||+++|.+...+..|.|...
T Consensus 1077 I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iD 1139 (1321)
T 4f4c_A 1077 VIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFID 1139 (1321)
T ss_dssp EEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEET
T ss_pred EEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEEC
Confidence 677888888853 12 378889999999999999999999999999888877776543
No 183
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.96 E-value=0.00064 Score=76.48 Aligned_cols=119 Identities=16% Similarity=0.119 Sum_probs=63.1
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHh--hc-------cCceeeeecccchhh---------------------hcccc
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAG--EA-------GVNFFSISASQFVEI---------------------YVGVG 473 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~--~l-------~~~~~~i~~~~~~~~---------------------~~gq~ 473 (862)
-|+..+.-++|+||||+|||||++.|+. .. +...++++....... ++...
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~ 252 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARA 252 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEecc
Confidence 4778888899999999999999996652 22 123555554331000 01100
Q ss_pred --h----hhHHHHHHHHHhcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCC
Q 002961 474 --A----SRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR 543 (862)
Q Consensus 474 --~----~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~ 543 (862)
. ..+..+...+....|.++++|++..+........++.+++ ...+..++..|..+....++.||.+++.
T Consensus 253 ~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~R-q~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 253 YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSAR-QMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHH-HHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHH-HHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 0 1112233344456789999999977653211100111222 2233555555555544445677776654
No 184
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.94 E-value=0.0013 Score=73.10 Aligned_cols=118 Identities=21% Similarity=0.234 Sum_probs=64.2
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh----hccc-----------chhhHHHHHHHH-
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI----YVGV-----------GASRVRSLYQEA- 484 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~----~~gq-----------~~~~l~~~f~~a- 484 (862)
-|+..+.-++|+|+||+|||+|+..++..+ +.++.+++....... .++. ....+...+..+
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~ 148 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLV 148 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHH
Confidence 367777789999999999999998887654 456666665432111 0111 111222222222
Q ss_pred HhcCCceeEhHHHHHhhhhccCcCCCCch---hHHHHHHHHHHhhccccCCCcEEEEEec
Q 002961 485 KDNAPSVVFIDELDAVGRERGLIKGSGGQ---ERDATLNQLLVCLDGFEGRGNVITIAST 541 (862)
Q Consensus 485 ~~~~p~iL~iDEid~l~~~~~~~~~Sgge---~~r~~l~~LL~~Ld~~~~~~~vlvI~tT 541 (862)
+...+++|+||.+..+.......+..+.. .....+..++..|..+....++.||++.
T Consensus 149 ~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp TTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred hcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 23568899999998876322111111110 1112345555555544444566666654
No 185
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.90 E-value=0.00052 Score=72.96 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=25.4
Q ss_pred ccccCCeEEEECCCCCchhHHHHHHHhhc
Q 002961 425 GVRIPGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 425 ~i~~~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
++..+.-++|+||||+|||||+..|++.+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56777789999999999999999999754
No 186
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.90 E-value=0.00052 Score=66.91 Aligned_cols=30 Identities=30% Similarity=0.687 Sum_probs=25.9
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCcee
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFF 458 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~ 458 (862)
+..|+|+|+||+||||+++.|++.++.+++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 456899999999999999999999886543
No 187
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.90 E-value=0.0014 Score=71.42 Aligned_cols=116 Identities=18% Similarity=0.176 Sum_probs=65.6
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhc---------cCceeeeecccc--hh------hhccc--------------
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEA---------GVNFFSISASQF--VE------IYVGV-------------- 472 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l---------~~~~~~i~~~~~--~~------~~~gq-------------- 472 (862)
-|+..+.-++|+||||+|||+|+..++..+ +...++++.... .. ..++.
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~ 181 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRA 181 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeC
Confidence 467777889999999999999999998764 345666665442 00 00110
Q ss_pred -chh----hHHHHHHHHHh-cCCceeEhHHHHHhhhhccCcCCCCch-hHHHHHHHHHHhhccccCCCcEEEEEec
Q 002961 473 -GAS----RVRSLYQEAKD-NAPSVVFIDELDAVGRERGLIKGSGGQ-ERDATLNQLLVCLDGFEGRGNVITIAST 541 (862)
Q Consensus 473 -~~~----~l~~~f~~a~~-~~p~iL~iDEid~l~~~~~~~~~Sgge-~~r~~l~~LL~~Ld~~~~~~~vlvI~tT 541 (862)
... .+..+...+.. ..+++++||.+..+...... +.+.. .....+..++..|..+....++.||.+.
T Consensus 182 ~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~--~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~n 255 (324)
T 2z43_A 182 INTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYP--GRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255 (324)
T ss_dssp CSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSC--TTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhc--CcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence 011 12233344445 67889999999887643111 11111 1122455555555554433355666554
No 188
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.89 E-value=0.00074 Score=83.27 Aligned_cols=29 Identities=24% Similarity=0.186 Sum_probs=24.6
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHh
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAG 451 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~ 451 (862)
++.+..+.-++|+||||+|||||++.|++
T Consensus 667 sl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 667 DLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 45556667799999999999999999975
No 189
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.87 E-value=0.0013 Score=72.96 Aligned_cols=79 Identities=24% Similarity=0.344 Sum_probs=50.1
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhh----hccc-----------chhhHHHHHHH-H
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI----YVGV-----------GASRVRSLYQE-A 484 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~----~~gq-----------~~~~l~~~f~~-a 484 (862)
-|+..+.-++|+|+||+|||||+..++..+ +..+.+++....... .++. ....+..++.. +
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~ 137 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 137 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence 357777789999999999999999888754 456666765331111 0111 11222233332 2
Q ss_pred HhcCCceeEhHHHHHhhh
Q 002961 485 KDNAPSVVFIDELDAVGR 502 (862)
Q Consensus 485 ~~~~p~iL~iDEid~l~~ 502 (862)
+...+++++||.+..+..
T Consensus 138 ~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 138 RSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHTCCSEEEEECGGGCCC
T ss_pred hccCCCEEEEcCHHHhcc
Confidence 346788999999988753
No 190
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.79 E-value=0.0014 Score=72.19 Aligned_cols=117 Identities=19% Similarity=0.172 Sum_probs=64.3
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhc---------cCceeeeecccchh-h-------hccc--------------
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEA---------GVNFFSISASQFVE-I-------YVGV-------------- 472 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l---------~~~~~~i~~~~~~~-~-------~~gq-------------- 472 (862)
-|+..+.-++|+||||+|||+|+..++... +...++++...... . .++.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~ 196 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARA 196 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeec
Confidence 356777779999999999999999998863 34556666544200 0 0110
Q ss_pred -chhhH----HHHHHHHHh--cCCceeEhHHHHHhhhhccCcCCCCchh-HHHHHHHHHHhhccccCCCcEEEEEecC
Q 002961 473 -GASRV----RSLYQEAKD--NAPSVVFIDELDAVGRERGLIKGSGGQE-RDATLNQLLVCLDGFEGRGNVITIASTN 542 (862)
Q Consensus 473 -~~~~l----~~~f~~a~~--~~p~iL~iDEid~l~~~~~~~~~Sgge~-~r~~l~~LL~~Ld~~~~~~~vlvI~tTN 542 (862)
....+ ..+...+.. ..+++++||.+..+.... +.+ .++.. ....+..++..|..+....++.||.++.
T Consensus 197 ~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~-~~~-~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 197 YTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVD-FSG-RGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp CSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHH-CCG-GGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHH-hcc-cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 01111 222344445 678899999998876431 110 01111 1123455555555444334556666543
No 191
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.78 E-value=0.00062 Score=68.21 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=24.4
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
+..+.-++|+||||+|||||++.|++...
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44566789999999999999999999853
No 192
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.76 E-value=0.00049 Score=79.89 Aligned_cols=76 Identities=20% Similarity=0.199 Sum_probs=49.4
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccchhhh---------c-----ccchhhHHHHHHHHHhcC
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY---------V-----GVGASRVRSLYQEAKDNA 488 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~---------~-----gq~~~~l~~~f~~a~~~~ 488 (862)
++.+..+..++|+||||+|||||+++|++.+.+..+.+...+..... . +.....+..++..+....
T Consensus 254 ~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~ 333 (511)
T 2oap_1 254 WLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQR 333 (511)
T ss_dssp HHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGC
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccC
Confidence 45567778899999999999999999999887665555433211100 0 011112344444555678
Q ss_pred CceeEhHHHH
Q 002961 489 PSVVFIDELD 498 (862)
Q Consensus 489 p~iL~iDEid 498 (862)
|++++++|+.
T Consensus 334 PD~iivgEir 343 (511)
T 2oap_1 334 PDYIIVGEVR 343 (511)
T ss_dssp CSEEEESCCC
T ss_pred CCeEEeCCcC
Confidence 9999988873
No 193
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.74 E-value=0.00089 Score=65.54 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=29.2
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
+.-|+|+|++|+||||+++.|+..++.+++.++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 34689999999999999999999988777665543
No 194
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.001 Score=78.70 Aligned_cols=30 Identities=30% Similarity=0.326 Sum_probs=26.1
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
+.++|+||||+|||||+++|+|...+..|.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~ 408 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQ 408 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 558999999999999999999988766554
No 195
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.71 E-value=0.00035 Score=71.54 Aligned_cols=34 Identities=29% Similarity=0.335 Sum_probs=28.0
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhccCceeee
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI 460 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i 460 (862)
+..+..++|+||||+|||||+++|+|. .+..|.+
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 356778999999999999999999997 6554544
No 196
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.69 E-value=0.0017 Score=80.27 Aligned_cols=28 Identities=14% Similarity=0.036 Sum_probs=23.3
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHH
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVA 450 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA 450 (862)
++++..+.-++|+||||+||||+++.++
T Consensus 656 sl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 656 YFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred eeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4555556779999999999999999994
No 197
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.69 E-value=0.00072 Score=69.40 Aligned_cols=31 Identities=35% Similarity=0.583 Sum_probs=24.4
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
++.+..+.-++|+||||+|||||+++|++..
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4666777789999999999999999999977
No 198
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.69 E-value=0.001 Score=67.41 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=29.3
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccC---ceeeeecc
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGV---NFFSISAS 463 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~---~~~~i~~~ 463 (862)
..+..++|.||||+|||||+++|++.+.+ ..+.+...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d 59 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD 59 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecC
Confidence 34556899999999999999999998763 45666543
No 199
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.67 E-value=0.00066 Score=71.50 Aligned_cols=52 Identities=25% Similarity=0.393 Sum_probs=32.7
Q ss_pred ccccCc-cccc-ccc--c--ccccccc---CCeEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 408 YLERGV-DVKF-SDM--Y--RRRGVRI---PGGILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 408 l~~~~~-s~~~-~~~--~--~~l~i~~---~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
+.++++ ++.| ++. + .++.+.. +..|+|+|++|+||||+++.|++.++.+++.
T Consensus 18 l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 18 LETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp --------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred eEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 455566 6666 221 1 2566677 7889999999999999999999998876554
No 200
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.67 E-value=0.001 Score=66.90 Aligned_cols=30 Identities=33% Similarity=0.543 Sum_probs=25.4
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCc
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN 456 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~ 456 (862)
..+..++|+||||+||||+++.|++.++..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~ 56 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLE 56 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCe
Confidence 456679999999999999999999988643
No 201
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.66 E-value=0.00059 Score=84.34 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=47.5
Q ss_pred cccccCccccccc----cc--cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 407 QYLERGVDVKFSD----MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 407 ~l~~~~~s~~~~~----~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
.+.++++++.|++ .+ .++.+..+..++|+||||+|||||+++|+|.+.+..|.+...
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~ 733 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTH 733 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEEC
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEc
Confidence 4777888888853 12 378888899999999999999999999999998888888654
No 202
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.64 E-value=0.0065 Score=62.25 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=28.2
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhc---cCceeeee
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSIS 461 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~ 461 (862)
.|+..+.-++|+||||+|||||+..++... +...++++
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 467778889999999999999987776543 33444443
No 203
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.62 E-value=0.001 Score=66.23 Aligned_cols=28 Identities=36% Similarity=0.568 Sum_probs=23.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCce
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVNF 457 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~~ 457 (862)
.-++|+||||+|||||+++|++.+...+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 4578999999999999999999875433
No 204
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.61 E-value=0.0018 Score=70.26 Aligned_cols=116 Identities=16% Similarity=0.216 Sum_probs=59.7
Q ss_pred ccccCCeEEEECCCCCchhHHHHHHHhhc-----cCceeeeecccchhh----hccc-----------chhhH-HHHHHH
Q 002961 425 GVRIPGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEI----YVGV-----------GASRV-RSLYQE 483 (862)
Q Consensus 425 ~i~~~~~vlL~GpnGtGKTtLakaLA~~l-----~~~~~~i~~~~~~~~----~~gq-----------~~~~l-~~~f~~ 483 (862)
|+..+ .++|+||||+|||||+-.++..+ +....+++...-... -+|. ....+ ..+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45555 68999999999999976665443 445666765432211 1111 11111 112222
Q ss_pred ---HHhcCCceeEhHHHHHhhhhccCcCCCC----c-hhHHHHHHHHHHhhccccCCCcEEEEEec
Q 002961 484 ---AKDNAPSVVFIDELDAVGRERGLIKGSG----G-QERDATLNQLLVCLDGFEGRGNVITIAST 541 (862)
Q Consensus 484 ---a~~~~p~iL~iDEid~l~~~~~~~~~Sg----g-e~~r~~l~~LL~~Ld~~~~~~~vlvI~tT 541 (862)
++...|+++++|-|..+.......+.-+ | ......++++|..|..+-...++.+|.+.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tN 169 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAIN 169 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 2445799999999988754221111111 1 01222345555555444444566666653
No 205
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.61 E-value=0.0011 Score=66.85 Aligned_cols=34 Identities=32% Similarity=0.311 Sum_probs=27.3
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
.+..++|+||||+|||||++.|++.+++.++.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 4456899999999999999999998774444444
No 206
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.61 E-value=0.00095 Score=67.63 Aligned_cols=31 Identities=19% Similarity=0.405 Sum_probs=24.9
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
..+..+.-++|+||||+|||||+++|++.+.
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4567777899999999999999999999874
No 207
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.57 E-value=0.00096 Score=69.50 Aligned_cols=34 Identities=21% Similarity=0.126 Sum_probs=26.1
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN 456 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~ 456 (862)
++.+..+..++|.||||+|||||++.|++.++..
T Consensus 19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 19 YFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp ----CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred eccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3556666779999999999999999999987643
No 208
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.57 E-value=0.00075 Score=74.83 Aligned_cols=42 Identities=33% Similarity=0.406 Sum_probs=35.4
Q ss_pred cccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 422 RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 422 ~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
.++.+..+..++|+||||+|||||+++|++...+..+.+...
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 367778888999999999999999999999887766666544
No 209
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.55 E-value=0.0013 Score=68.47 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=24.2
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccC
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGV 455 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~ 455 (862)
.|..++|+||||+|||||++.|+..++.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999999966544
No 210
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.52 E-value=0.0018 Score=71.50 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=42.3
Q ss_pred ccccccCcccccc-cc--cc-ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 406 PQYLERGVDVKFS-DM--YR-RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 406 ~~l~~~~~s~~~~-~~--~~-~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
..+..++++..|+ +. .. -+.+..+..++|.||||+|||||++.|++...+..+.+.
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~ 103 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLA 103 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEE
T ss_pred CCeeecccceecCCCCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 3466677777775 21 11 266777888999999999999999999999877766543
No 211
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.51 E-value=0.0014 Score=67.44 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=24.9
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhccC
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEAGV 455 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l~~ 455 (862)
+..+.-++|+||||+|||||+++|++...+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 455667899999999999999999998764
No 212
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.50 E-value=0.0013 Score=64.74 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=27.2
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
+..|+|+|++||||||+++.|+..++.+++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~ 35 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYD 35 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4578999999999999999999998877654
No 213
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.49 E-value=0.0038 Score=78.08 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.6
Q ss_pred CCeEEEECCCCCchhHHHHHHHhh
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
+..++|+||||+|||||++.| |.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HH
T ss_pred CcEEEEECCCCCChHHHHHHH-HH
Confidence 567999999999999999999 64
No 214
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.49 E-value=0.0015 Score=65.28 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=25.8
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhccCce
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF 457 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~ 457 (862)
+..+..++|+||||+||||+++.|++.+.+..
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~ 34 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSY 34 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCTTCCE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhhCCCe
Confidence 34566789999999999999999999874333
No 215
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.49 E-value=0.0015 Score=64.67 Aligned_cols=33 Identities=33% Similarity=0.541 Sum_probs=27.2
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
..|..|+|+|++|+||||+++.|+..++.+++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 345568999999999999999999988765443
No 216
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.46 E-value=0.0016 Score=63.66 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=24.7
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCce
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNF 457 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~ 457 (862)
+..++|+|+||+||||+++.|++.++..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~ 36 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAF 36 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEE
Confidence 44689999999999999999999876543
No 217
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.46 E-value=0.0015 Score=64.88 Aligned_cols=34 Identities=35% Similarity=0.547 Sum_probs=27.5
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhh-ccCceee
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGE-AGVNFFS 459 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~-l~~~~~~ 459 (862)
...+..|+|+|++||||||+++.|+.. ++.+++.
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 344567999999999999999999998 5655443
No 218
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.45 E-value=0.0011 Score=68.10 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=20.8
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHH-hhcc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVA-GEAG 454 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA-~~l~ 454 (862)
++.+..+.-++|+||||+|||||++.|+ +...
T Consensus 21 sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 21 SMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred CcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4667777889999999999999999999 8763
No 219
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.43 E-value=0.0017 Score=65.58 Aligned_cols=27 Identities=37% Similarity=0.594 Sum_probs=22.7
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
++..++|+||||+|||||++.|++...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456689999999999999999999764
No 220
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.41 E-value=0.0037 Score=72.72 Aligned_cols=117 Identities=17% Similarity=0.165 Sum_probs=65.6
Q ss_pred cc-ccccCCeEEEECCCCCchhHHHHH--HHhhccC--ceeeeecccchh---------hhcccc---------------
Q 002961 423 RR-GVRIPGGILLCGPPGVGKTLLAKA--VAGEAGV--NFFSISASQFVE---------IYVGVG--------------- 473 (862)
Q Consensus 423 ~l-~i~~~~~vlL~GpnGtGKTtLaka--LA~~l~~--~~~~i~~~~~~~---------~~~gq~--------------- 473 (862)
++ ++..+..++|+||||+|||||++. ++|...+ ..++++..+... .|..|.
T Consensus 32 ~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~ 111 (525)
T 1tf7_A 32 SHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPD 111 (525)
T ss_dssp TTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCC
T ss_pred cCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcc
Confidence 46 778888999999999999999999 5665532 233333221100 000000
Q ss_pred ------------hhhHHHHHHHHHhcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEec
Q 002961 474 ------------ASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST 541 (862)
Q Consensus 474 ------------~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tT 541 (862)
...+......+....|.+++|||+-.+.... ......+..+..++..+.. .++.+|.+|
T Consensus 112 ~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~-----~lD~~~~~~l~~ll~~l~~----~g~tvl~it 182 (525)
T 1tf7_A 112 PEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY-----DASSVVRRELFRLVARLKQ----IGATTVMTT 182 (525)
T ss_dssp SSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT-----CCHHHHHHHHHHHHHHHHH----HTCEEEEEE
T ss_pred cchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhc-----CCHHHHHHHHHHHHHHHHH----CCCEEEEEe
Confidence 0111333444555678889999886543220 1122334445555555532 245777788
Q ss_pred CCCCCCC
Q 002961 542 NRPDILD 548 (862)
Q Consensus 542 N~~~~Ld 548 (862)
+..+.++
T Consensus 183 H~~~~~~ 189 (525)
T 1tf7_A 183 ERIEEYG 189 (525)
T ss_dssp ECSSSSS
T ss_pred cCCCCcc
Confidence 7777653
No 221
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.40 E-value=0.0017 Score=62.75 Aligned_cols=30 Identities=23% Similarity=0.171 Sum_probs=25.9
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceeee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFSI 460 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~i 460 (862)
.|+|+|++|+||||+++.|+..++.+++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 32 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKG 32 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecC
Confidence 478999999999999999999988766443
No 222
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.39 E-value=0.0012 Score=71.50 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=30.3
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
+.+..|.-++|+||||+||||+++.|++.+.+..+.+.
T Consensus 95 ~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~ 132 (302)
T 3b9q_A 95 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 132 (302)
T ss_dssp CCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 44566778999999999999999999998765444443
No 223
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.37 E-value=0.0014 Score=70.88 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=36.0
Q ss_pred ccccCccccccc-cc--cccccccCCeEEEECCCCCchhHHHHHHHhhc
Q 002961 408 YLERGVDVKFSD-MY--RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 408 l~~~~~s~~~~~-~~--~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
+.++++++.|.. .+ .++.+..+..++|+||||+|||||+++|++.+
T Consensus 102 i~~~~vs~~y~~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 102 FNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEEEEEEcChhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 445666666641 12 26778888889999999999999999999987
No 224
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.36 E-value=0.00071 Score=73.26 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=27.7
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhcc--Cceeeee
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAG--VNFFSIS 461 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~--~~~~~i~ 461 (862)
..+..++|+||||+|||||++.|++.++ +..|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 4455689999999999999999999876 5444443
No 225
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.35 E-value=0.0031 Score=76.90 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=22.8
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhh
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
..+..++|+||||+|||||++.|++.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 45566999999999999999999985
No 226
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.31 E-value=0.002 Score=72.84 Aligned_cols=90 Identities=22% Similarity=0.211 Sum_probs=49.3
Q ss_pred ccccCccccccc--cccccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccc-hhh--------hcccch-h
Q 002961 408 YLERGVDVKFSD--MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF-VEI--------YVGVGA-S 475 (862)
Q Consensus 408 l~~~~~s~~~~~--~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~-~~~--------~~gq~~-~ 475 (862)
+.++++.+.++. .+.++-...+.-++|+||||+|||||+++|++.+.+..+.+...+- ... .+.... -
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~ 223 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDM 223 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTB
T ss_pred CCHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCc
Confidence 445555554432 2233422333448899999999999999999988665444322111 110 001110 1
Q ss_pred hHHHHHHHHHhcCCceeEhHHH
Q 002961 476 RVRSLYQEAKDNAPSVVFIDEL 497 (862)
Q Consensus 476 ~l~~~f~~a~~~~p~iL~iDEi 497 (862)
.+...+..+....|+++++.|+
T Consensus 224 ~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 224 TFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp CHHHHHHHHGGGCCSEEEESCC
T ss_pred CHHHHHHHHhccCCCeEEEcCc
Confidence 1233444444567888877774
No 227
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.30 E-value=0.0023 Score=64.24 Aligned_cols=30 Identities=37% Similarity=0.722 Sum_probs=25.8
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCcee
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFF 458 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~ 458 (862)
+..|+|+|++|+||||+++.|++.++..++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i 47 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFI 47 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEE
Confidence 456899999999999999999998876544
No 228
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.30 E-value=0.0031 Score=71.71 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=41.5
Q ss_pred ccccCcccccc-cc--ccc-cccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 408 YLERGVDVKFS-DM--YRR-RGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 408 l~~~~~s~~~~-~~--~~~-l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
+..+++++.|. +. ... +.+..+..++|.||||+|||||++.|++...+..+.+..
T Consensus 132 l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~ 190 (438)
T 2dpy_A 132 LQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGL 190 (438)
T ss_dssp TTSCCCCSBCCCSCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEE
T ss_pred eEEeccceecCCCceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEE
Confidence 55566666665 21 111 667777889999999999999999999998887776654
No 229
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.30 E-value=0.0083 Score=68.16 Aligned_cols=139 Identities=19% Similarity=0.243 Sum_probs=86.5
Q ss_pred ceeEhHHHHHhhhhccCcCCCCchhH-HHHHHHHHHhhcccc--------CCCcEEEEEec-----CCCCCCCccccCCC
Q 002961 490 SVVFIDELDAVGRERGLIKGSGGQER-DATLNQLLVCLDGFE--------GRGNVITIAST-----NRPDILDPALVRPG 555 (862)
Q Consensus 490 ~iL~iDEid~l~~~~~~~~~Sgge~~-r~~l~~LL~~Ld~~~--------~~~~vlvI~tT-----N~~~~Ld~aLlrpg 555 (862)
+++++||+|+++.... +++++.. ..+...||..|++.. ..+++++|+|. |..+.+ |.|+.
T Consensus 252 ~il~~DEidki~~~~~---~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dli-pel~~-- 325 (444)
T 1g41_A 252 GIVFIDEIDKICKKGE---YSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLI-PELQG-- 325 (444)
T ss_dssp CEEEEETGGGGSCCSS---CSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSC-HHHHT--
T ss_pred CeeeHHHHHHHhhccC---CCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcc-hHHhc--
Confidence 4899999999975422 1334433 346678888888742 35678999887 555544 77887
Q ss_pred CccccccCCCCCHHhHHHHHH---H-----H---HccCCCC---CcccHHHHHh-------hcCCCCHHHHHHHHHHHHH
Q 002961 556 RFDRKIFIPKPGLIGRMEILK---V-----H---ARKKPMA---DDVDYLAVAS-------MTDGMVGAELANIVEVAAI 614 (862)
Q Consensus 556 Rfd~~I~~~~P~~~~R~~Il~---~-----~---l~~~~~~---~~~dl~~lA~-------~t~G~s~adI~~lv~~A~~ 614 (862)
||+.+|.|+.++.++...|+. . + +...... .+..+..++. .|...-.+.+..++..++.
T Consensus 326 R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~ 405 (444)
T 1g41_A 326 RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMD 405 (444)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHH
T ss_pred ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHH
Confidence 999999999999999999993 1 1 1111111 2223444444 2344445666666665554
Q ss_pred HHHHh------CCcccCHHHHHHHHH
Q 002961 615 NMMRD------GRTEITTDDLLQAAQ 634 (862)
Q Consensus 615 ~A~~~------~~~~It~edl~~Al~ 634 (862)
.+..+ ....||.+++...+.
T Consensus 406 ~~~~~~~~~~~~~~~i~~~~v~~~l~ 431 (444)
T 1g41_A 406 KISFSASDMNGQTVNIDAAYVADALG 431 (444)
T ss_dssp HHHHHGGGCTTCEEEECHHHHHHHHT
T ss_pred HHHhhccccCCCeEEEeHHHHHHhcC
Confidence 44433 123478888876653
No 230
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.30 E-value=0.0084 Score=61.49 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=29.0
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhh----ccCceeeeec
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGE----AGVNFFSISA 462 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~----l~~~~~~i~~ 462 (862)
-|+..+.-++|+|+||+|||+|+-.++.. .+.++++++.
T Consensus 25 GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 36778888999999999999999776543 2455555543
No 231
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.28 E-value=0.0023 Score=62.97 Aligned_cols=33 Identities=42% Similarity=0.760 Sum_probs=27.2
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
..+..|+|+|++|+||||+++.|+..++..++.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 345578999999999999999999988765543
No 232
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.26 E-value=0.0049 Score=81.07 Aligned_cols=119 Identities=20% Similarity=0.199 Sum_probs=73.8
Q ss_pred ccccCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchhhh----ccc--------chhhHHHHHHHHHh---
Q 002961 425 GVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIY----VGV--------GASRVRSLYQEAKD--- 486 (862)
Q Consensus 425 ~i~~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~----~gq--------~~~~l~~~f~~a~~--- 486 (862)
|+.++.-++|.|+||+|||+|+..+|..+ +.++++++........ +|. ....+..++..++.
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 68888889999999999999999999866 3357777765432221 121 11123444444433
Q ss_pred -cCCceeEhHHHHHhhh-hcc-CcCCCCc-hhHHHHHHHHHHhhccccCCCcEEEEEecCC
Q 002961 487 -NAPSVVFIDELDAVGR-ERG-LIKGSGG-QERDATLNQLLVCLDGFEGRGNVITIASTNR 543 (862)
Q Consensus 487 -~~p~iL~iDEid~l~~-~~~-~~~~Sgg-e~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~ 543 (862)
..|+++++|.+..+.. ... ...++.. ......++.++..|..+....++.||+++..
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv 868 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 6789999999998754 210 0001111 1112236777777777666667777777643
No 233
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.24 E-value=0.0024 Score=62.57 Aligned_cols=29 Identities=34% Similarity=0.557 Sum_probs=25.5
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
.|+|+|+||+||||+++.|+..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999998876543
No 234
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.23 E-value=0.0015 Score=65.73 Aligned_cols=24 Identities=42% Similarity=0.690 Sum_probs=22.1
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
..++|+||||+|||||++.|++.+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 468999999999999999999976
No 235
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.22 E-value=0.0027 Score=64.69 Aligned_cols=28 Identities=36% Similarity=0.451 Sum_probs=24.8
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCce
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVNF 457 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~~ 457 (862)
..|+|+||+|+||||+++.|++.++.++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~ 33 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHL 33 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 4689999999999999999999887654
No 236
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.20 E-value=0.0022 Score=63.10 Aligned_cols=29 Identities=34% Similarity=0.579 Sum_probs=24.9
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCce
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNF 457 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~ 457 (862)
+..|+|+|++|+||||+++.|+..++.++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~ 32 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKK 32 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 34689999999999999999999887554
No 237
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.20 E-value=0.036 Score=67.25 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=24.7
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
++.+. +..++|+||||+|||||++.|++..
T Consensus 571 disl~-g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 571 DLEMA-HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEEES-SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eccCC-CcEEEEECCCCCChHHHHHHHHhhh
Confidence 33344 7789999999999999999999853
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.19 E-value=0.0025 Score=63.10 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=22.9
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
+.-++|+||+|+|||||++.|++...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45689999999999999999999764
No 239
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.19 E-value=0.005 Score=66.68 Aligned_cols=28 Identities=29% Similarity=0.251 Sum_probs=24.4
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhc
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
...|.-++|+|+||+||||++..||+.+
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 4556678999999999999999999876
No 240
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.19 E-value=0.0022 Score=64.38 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=24.2
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
.|+|+|+||+||||+++.|++ ++.+++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~ 30 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD 30 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE
Confidence 579999999999999999999 7765544
No 241
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.18 E-value=0.0025 Score=62.86 Aligned_cols=30 Identities=30% Similarity=0.578 Sum_probs=26.1
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
..|+|+|++|+||||+++.|+..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 358999999999999999999998877543
No 242
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.17 E-value=0.016 Score=67.26 Aligned_cols=112 Identities=18% Similarity=0.143 Sum_probs=64.0
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhcc---Cceeeeecccchhh----------------------hcc------
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG---VNFFSISASQFVEI----------------------YVG------ 471 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~---~~~~~i~~~~~~~~----------------------~~g------ 471 (862)
..++..+..++|.|+||+|||||++.+++... ...+++...+.... +..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~L 354 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESA 354 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccC
Confidence 45778888899999999999999999998653 22333332211000 000
Q ss_pred cchhhHHHHHHHHHhcCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCC
Q 002961 472 VGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 544 (862)
Q Consensus 472 q~~~~l~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~ 544 (862)
......+.++..+....|.++++|=+..+... ..+...+..+..++..+. . .++.+|.+++..
T Consensus 355 S~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~------~~~~~~~~~i~~ll~~l~---~-~g~tvilvsh~~ 417 (525)
T 1tf7_A 355 GLEDHLQIIKSEINDFKPARIAIDSLSALARG------VSNNAFRQFVIGVTGYAK---Q-EEITGLFTNTSD 417 (525)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECHHHHTSS------SCHHHHHHHHHHHHHHHH---H-TTCEEEEEEECS
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcChHHHHhh------CChHHHHHHHHHHHHHHH---h-CCCEEEEEECcc
Confidence 01122355666666788999999955444221 122234445555555553 2 244555555544
No 243
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.17 E-value=0.0027 Score=63.77 Aligned_cols=29 Identities=28% Similarity=0.161 Sum_probs=25.0
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
...+.-|+|+||+|+||||++++|++.++
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34566789999999999999999999874
No 244
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.16 E-value=0.0042 Score=67.32 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=24.7
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhh
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-|+..+.-++|+|+||+|||+|+..++..
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35677777999999999999999988864
No 245
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.15 E-value=0.0019 Score=71.57 Aligned_cols=37 Identities=27% Similarity=0.275 Sum_probs=29.8
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhccCceeee
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI 460 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i 460 (862)
+.+..|.-++|+||||+||||+++.|++.+.+..+.+
T Consensus 152 l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V 188 (359)
T 2og2_A 152 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV 188 (359)
T ss_dssp CCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEE
Confidence 4556777899999999999999999999875544444
No 246
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.13 E-value=0.0021 Score=68.39 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=22.4
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
.++|+||||+|||||+++|+|...+..|.+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~ 34 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSW 34 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccc
Confidence 4789999999999999999998877666554
No 247
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.13 E-value=0.0029 Score=66.46 Aligned_cols=31 Identities=32% Similarity=0.416 Sum_probs=26.4
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
-++|+||||+|||||++.||+.++..++..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D 33 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALD 33 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEecc
Confidence 3689999999999999999999887665543
No 248
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.10 E-value=0.0027 Score=61.18 Aligned_cols=28 Identities=39% Similarity=0.603 Sum_probs=23.6
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
-|+|+|++|+||||+++.| ..++.+++.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 4789999999999999999 777766544
No 249
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.09 E-value=0.0034 Score=63.63 Aligned_cols=28 Identities=36% Similarity=0.431 Sum_probs=24.1
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccC
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGV 455 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~ 455 (862)
.+.-++|+||||+|||||++.|++.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3455889999999999999999998754
No 250
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.07 E-value=0.0022 Score=70.98 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=30.0
Q ss_pred cccccc--CCeEEEECCCCCchhHHHHHHHhhccCce
Q 002961 423 RRGVRI--PGGILLCGPPGVGKTLLAKAVAGEAGVNF 457 (862)
Q Consensus 423 ~l~i~~--~~~vlL~GpnGtGKTtLakaLA~~l~~~~ 457 (862)
++.+.. +..++|+||||+|||||+++|++...+..
T Consensus 162 ~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 162 PKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp CTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred CHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 455555 77899999999999999999999987765
No 251
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.05 E-value=0.0029 Score=62.64 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=27.0
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
.+..|+|+|++|+||||+++.|+..++.+++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 39 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLS 39 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 45578999999999999999999988766443
No 252
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.04 E-value=0.0063 Score=69.41 Aligned_cols=39 Identities=28% Similarity=0.349 Sum_probs=31.1
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhc----cCceeeeec
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEA----GVNFFSISA 462 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l----~~~~~~i~~ 462 (862)
.|+.++.-++|.|+||+|||||+..++..+ +.++.+++.
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 578888889999999999999999998854 335555553
No 253
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.02 E-value=0.0031 Score=62.19 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=25.3
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCce
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNF 457 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~ 457 (862)
|..|+|+|++|+||||+++.|+..++.++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~ 31 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTH 31 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 44689999999999999999999887654
No 254
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.0017 Score=74.38 Aligned_cols=48 Identities=15% Similarity=0.049 Sum_probs=35.4
Q ss_pred cccCccccccccccccccccCCeEEEECCCCCchhHHHHHHHhhccCcee
Q 002961 409 LERGVDVKFSDMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF 458 (862)
Q Consensus 409 ~~~~~s~~~~~~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~ 458 (862)
.+.++++.|++ .++.+..+..++|+||||+|||||+++|+|...+..|
T Consensus 120 ~~~nl~~~y~~--vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 120 YIYNLHFMLEK--IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp HHHHHHHHHHH--HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred hhhhhhehhhc--CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 34444444432 3566778889999999999999999999998754433
No 255
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.02 E-value=0.0025 Score=73.15 Aligned_cols=40 Identities=13% Similarity=0.002 Sum_probs=33.1
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecc
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 463 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~ 463 (862)
++.+.. ..++|+||||+|||||+++|+|.+.+..|.+.+.
T Consensus 24 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~ 63 (483)
T 3euj_A 24 TFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFR 63 (483)
T ss_dssp EEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCC
T ss_pred EEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEEC
Confidence 466667 7899999999999999999999887776666543
No 256
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.01 E-value=0.0034 Score=65.73 Aligned_cols=38 Identities=32% Similarity=0.401 Sum_probs=29.8
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceeeeeccc
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 464 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~ 464 (862)
..|..|+|+|+||+||||+++.|+..++...+.++...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~ 67 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDS 67 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHH
Confidence 44567899999999999999999998875455555443
No 257
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.00 E-value=0.0035 Score=63.04 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=23.3
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCcee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFF 458 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~ 458 (862)
.|+|+|++|+||||+++.|++ ++.+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i 30 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV 30 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc
Confidence 478999999999999999998 666544
No 258
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.00 E-value=0.019 Score=67.23 Aligned_cols=149 Identities=16% Similarity=0.151 Sum_probs=75.1
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc-------cCceeeeecccc-----hhh------hcc-------c---chhhHH-H
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA-------GVNFFSISASQF-----VEI------YVG-------V---GASRVR-S 479 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l-------~~~~~~i~~~~~-----~~~------~~g-------q---~~~~l~-~ 479 (862)
+.-|+|+|+.|+|||||+..++... ......++.+.. ... .++ . ....+. .
T Consensus 147 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 226 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDR 226 (591)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHH
Confidence 3458899999999999999987532 112333333221 000 011 0 011111 1
Q ss_pred HHHHHHhc-CCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCcc
Q 002961 480 LYQEAKDN-APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFD 558 (862)
Q Consensus 480 ~f~~a~~~-~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd 558 (862)
+...+... .|.+|++|+++... . + +.+ ..+..||.||........ .. +..
T Consensus 227 l~~~l~~~~~~~LLVLDdv~~~~----------------~----l---~~l--~~~~~ilvTsR~~~~~~~--~~-~~~- 277 (591)
T 1z6t_A 227 LRILMLRKHPRSLLILDDVWDSW----------------V----L---KAF--DSQCQILLTTRDKSVTDS--VM-GPK- 277 (591)
T ss_dssp HHHHHHHTCTTCEEEEEEECCHH----------------H----H---HTT--CSSCEEEEEESCGGGGTT--CC-SCE-
T ss_pred HHHHHccCCCCeEEEEeCCCCHH----------------H----H---HHh--cCCCeEEEECCCcHHHHh--cC-CCc-
Confidence 22222222 57789999885310 1 1 122 224566667755332111 11 111
Q ss_pred cccc-CCCCCHHhHHHHHHHHHccCCCCCcccHHHHHhhcCCCCHHHHHH
Q 002961 559 RKIF-IPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELAN 607 (862)
Q Consensus 559 ~~I~-~~~P~~~~R~~Il~~~l~~~~~~~~~dl~~lA~~t~G~s~adI~~ 607 (862)
..+. +.+.+.++-.+++..++.............++..+.|+.- -|..
T Consensus 278 ~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~ 326 (591)
T 1z6t_A 278 YVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPL-VVSL 326 (591)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHH-HHHH
T ss_pred eEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcH-HHHH
Confidence 1222 2467888888999888754221223456778888887543 3443
No 259
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.99 E-value=0.0044 Score=60.86 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=27.7
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc---cCceeeee
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSIS 461 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~ 461 (862)
.+..|+|+|++|+||||+++.|++.+ +.+++.++
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 34568899999999999999999987 66665554
No 260
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.98 E-value=0.0039 Score=63.48 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=26.9
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
.+..|+|+|++|+||||+++.|+..++.+++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 34578999999999999999999998865443
No 261
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.98 E-value=0.0042 Score=62.26 Aligned_cols=32 Identities=38% Similarity=0.517 Sum_probs=26.9
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
.|..|+|+|++|+||||+++.|+..++.+++.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~ 50 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 34568999999999999999999988876543
No 262
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.97 E-value=0.0035 Score=61.07 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=22.0
Q ss_pred CeEEEECCCCCchhHHHHHHHh-hccC
Q 002961 430 GGILLCGPPGVGKTLLAKAVAG-EAGV 455 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~-~l~~ 455 (862)
.-|+|+|+||+||||+++.|+. ..+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~ 29 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGF 29 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCc
Confidence 4588999999999999999998 4443
No 263
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.93 E-value=0.0027 Score=72.85 Aligned_cols=39 Identities=28% Similarity=0.204 Sum_probs=30.7
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
++.+..|.-++|+|+||+|||||++.|++.+.+..+.+.
T Consensus 287 sl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~ 325 (503)
T 2yhs_A 287 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM 325 (503)
T ss_dssp CCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred eeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEE
Confidence 355667777999999999999999999998755444443
No 264
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.93 E-value=0.0019 Score=64.69 Aligned_cols=45 Identities=11% Similarity=0.072 Sum_probs=29.2
Q ss_pred cccCccccccc-cccccccccCCeEEEECCCCCchhHHHHHHHhhc
Q 002961 409 LERGVDVKFSD-MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 409 ~~~~~s~~~~~-~~~~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
.++++++.|+. .+.++.+..+..++|+|+||+|||||++.|++..
T Consensus 5 ~~~~~~~~~~~~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 5 NYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp ------CEEEESSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred hhhhhhheeecCCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34445554432 2224666777789999999999999999999864
No 265
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.93 E-value=0.004 Score=60.40 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=26.6
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
..|+|+|++||||||+++.|+..++.+++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 468999999999999999999999887654
No 266
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.92 E-value=0.0045 Score=64.87 Aligned_cols=30 Identities=37% Similarity=0.468 Sum_probs=25.5
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCce
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNF 457 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~ 457 (862)
.+..|.|.||+|+||||+++.|+..++..+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 445689999999999999999998776543
No 267
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.92 E-value=0.0037 Score=64.04 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=26.6
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
.+..|+|+|++|+||||+++.|+..++..++.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 44678999999999999999999988765543
No 268
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.91 E-value=0.0031 Score=62.61 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=26.9
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCcee
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF 458 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~ 458 (862)
..+..|+|+|++|+||||+++.|+..++.+++
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i 41 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHL 41 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 34567899999999999999999998875543
No 269
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.91 E-value=0.059 Score=55.64 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.1
Q ss_pred eEEEECCCCCchhHHHHHHHhhc
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l 453 (862)
+|++.|++|+||||++-.++..+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 58999999999999988888754
No 270
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.90 E-value=0.0043 Score=61.05 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.8
Q ss_pred CeEEEECCCCCchhHHHHHHHhhcc
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
..|+|+|++|+||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 271
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.89 E-value=0.004 Score=60.97 Aligned_cols=30 Identities=33% Similarity=0.381 Sum_probs=22.2
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCcee
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFF 458 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~ 458 (862)
+..|+|+|++|+||||+++.|+..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999998887655
No 272
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.87 E-value=0.011 Score=68.26 Aligned_cols=75 Identities=20% Similarity=0.328 Sum_probs=46.8
Q ss_pred Cc-eeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCC--CCCccccCCCCccccccCCC
Q 002961 489 PS-VVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD--ILDPALVRPGRFDRKIFIPK 565 (862)
Q Consensus 489 p~-iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~--~Ld~aLlrpgRfd~~I~~~~ 565 (862)
|. ++++||+..+.... +. .+..++..|-..-..-++.+|.+|.+++ .++..++. -|...|-|..
T Consensus 297 P~ivlvIDE~~~ll~~~-------~~----~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv 363 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV-------GK----KVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTV 363 (512)
T ss_dssp CEEEEEEETHHHHHHHH-------HH----HHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECC
T ss_pred CcEEEEEeCHHHHHhhh-------hH----HHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEc
Confidence 54 78999998775421 11 1222333332222334788888888876 57776665 6777788888
Q ss_pred CCHHhHHHHHH
Q 002961 566 PGLIGRMEILK 576 (862)
Q Consensus 566 P~~~~R~~Il~ 576 (862)
.+..+...|+.
T Consensus 364 ~s~~dsr~ilg 374 (512)
T 2ius_A 364 SSKIDSRTILD 374 (512)
T ss_dssp SSHHHHHHHHS
T ss_pred CCHHHHHHhcC
Confidence 88877777663
No 273
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.87 E-value=0.0035 Score=68.09 Aligned_cols=30 Identities=23% Similarity=0.220 Sum_probs=25.7
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhccC
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEAGV 455 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l~~ 455 (862)
+..+.-++|.||||+|||||+++|++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 455666899999999999999999998754
No 274
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.87 E-value=0.0044 Score=62.75 Aligned_cols=29 Identities=28% Similarity=0.540 Sum_probs=25.0
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
.|+|+|++|+||||+++.|+..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 30 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIS 30 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 47899999999999999999988766543
No 275
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.86 E-value=0.0043 Score=66.45 Aligned_cols=35 Identities=40% Similarity=0.533 Sum_probs=27.7
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
.|.-|+|+||||+||||+++.|+..++.....++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 34568999999999999999999887544555554
No 276
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.86 E-value=0.0041 Score=62.93 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=25.1
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
.|+|+|++|+||||+++.|+..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 30 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIS 30 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEee
Confidence 47899999999999999999988766543
No 277
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.85 E-value=0.0045 Score=60.91 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=25.7
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCcee
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFF 458 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~ 458 (862)
+..|+|+|++|+||||+++.|+..++.+++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i 35 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHL 35 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 456899999999999999999998876544
No 278
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.84 E-value=0.0038 Score=67.59 Aligned_cols=34 Identities=21% Similarity=0.065 Sum_probs=28.0
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
.|..++|+||||+|||||++.|++.+.+..+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~ 134 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVM 134 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 4567899999999999999999998866555443
No 279
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.84 E-value=0.0033 Score=62.24 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.1
Q ss_pred eEEEECCCCCchhHHHHHHHhhcc
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
-++|+||||+|||||++.|++..+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 478999999999999999998543
No 280
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.81 E-value=0.013 Score=63.14 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=23.5
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
.+..++|+|+||+||||++..||+.+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999998663
No 281
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.79 E-value=0.0052 Score=59.59 Aligned_cols=29 Identities=28% Similarity=0.543 Sum_probs=25.3
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
.|+|+|++|+||||+++.|+..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 58999999999999999999988876543
No 282
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.77 E-value=0.015 Score=59.95 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=40.4
Q ss_pred eEEEECCCCCchhHHHHHHHhhc---cCceeeeeccc---c---hhhhcccc-----hhhHHHHHHHHHh----cCCcee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQ---F---VEIYVGVG-----ASRVRSLYQEAKD----NAPSVV 492 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~---~---~~~~~gq~-----~~~l~~~f~~a~~----~~p~iL 492 (862)
-++++|++|+||||++-.++..+ +..++.++... . +...+|.. ......+++.+.. ..++++
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 46789999999999887776654 33444443221 0 00011111 0112456666654 347899
Q ss_pred EhHHHHHh
Q 002961 493 FIDELDAV 500 (862)
Q Consensus 493 ~iDEid~l 500 (862)
+|||+..+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999764
No 283
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.73 E-value=0.0049 Score=64.18 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=27.4
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
..|..|+|+||+|+||||+++.|+..++.+++.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is 59 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLS 59 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 355679999999999999999999988765443
No 284
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.67 E-value=0.0057 Score=59.09 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=25.3
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
.|+|+|++|+||||+++.|+..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 47999999999999999999988876543
No 285
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.67 E-value=0.0044 Score=63.16 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=25.8
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCce
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNF 457 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~ 457 (862)
.+..|+|.|++|+||||+++.|+..++..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~ 33 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAH 33 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 345689999999999999999999988644
No 286
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.67 E-value=0.0054 Score=61.70 Aligned_cols=27 Identities=30% Similarity=0.186 Sum_probs=23.4
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
..+..|+|+|++|+||||+++.|++.+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 344568999999999999999999976
No 287
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.67 E-value=0.0062 Score=60.83 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=18.0
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
.-++++||+|+||||++..++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999998555543
No 288
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.66 E-value=0.022 Score=66.45 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=47.4
Q ss_pred ceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCC--CCCccccCCCCccccccCCCCC
Q 002961 490 SVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD--ILDPALVRPGRFDRKIFIPKPG 567 (862)
Q Consensus 490 ~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~--~Ld~aLlrpgRfd~~I~~~~P~ 567 (862)
-++++||+..+.... +.. +...+..|-..-..-++.+|.+|.++. .++..++. -|...|.|...+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~----~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKK----VEELIARIAQKARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHH----HHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh-------hHH----HHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 478999998775431 111 122222232233345789999998877 78877766 677788888888
Q ss_pred HHhHHHHH
Q 002961 568 LIGRMEIL 575 (862)
Q Consensus 568 ~~~R~~Il 575 (862)
..+-..|+
T Consensus 412 ~~Dsr~IL 419 (574)
T 2iut_A 412 KIDSRTIL 419 (574)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77766665
No 289
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.66 E-value=0.0054 Score=73.50 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=24.6
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHH
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVA 450 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA 450 (862)
++.+..+..++|+||||+|||||+++|.
T Consensus 342 sl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 342 SVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred eeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 6778888889999999999999997653
No 290
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.65 E-value=0.0082 Score=59.85 Aligned_cols=32 Identities=16% Similarity=0.079 Sum_probs=26.5
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc-cCceeee
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA-GVNFFSI 460 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l-~~~~~~i 460 (862)
+..|+|+|++|+||||+++.|+..+ +.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~ 36 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYL 36 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEE
Confidence 4568999999999999999999987 4555544
No 291
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.64 E-value=0.0062 Score=60.94 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=25.9
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
+..|+|+|++|+||||+++.|+..++.+++.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 3468999999999999999999988765443
No 292
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.62 E-value=0.006 Score=60.61 Aligned_cols=28 Identities=25% Similarity=0.552 Sum_probs=24.7
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCcee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFF 458 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~ 458 (862)
.|+|.|++|+||||+++.|+..++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4789999999999999999999886544
No 293
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.62 E-value=0.0067 Score=71.36 Aligned_cols=25 Identities=44% Similarity=0.554 Sum_probs=21.6
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
...++|+|+|||||||++..|+..+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999998754
No 294
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.61 E-value=0.0066 Score=61.79 Aligned_cols=31 Identities=29% Similarity=0.510 Sum_probs=26.4
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
+..|+|.|++|+||||+++.|+..++.+++.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 35 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLS 35 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEe
Confidence 3468999999999999999999998866543
No 295
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.60 E-value=0.0056 Score=65.35 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=28.1
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
+++..+.-++|.||||+|||||++.|++.+.
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 6788888899999999999999999999764
No 296
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.58 E-value=0.0061 Score=59.83 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.3
Q ss_pred eEEEECCCCCchhHHHHHHHhhccC
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGV 455 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~ 455 (862)
-.+|+||||+|||||+++|...++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5789999999999999999987754
No 297
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.56 E-value=0.0073 Score=62.14 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=30.3
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhccCceeeeecccch
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 466 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~ 466 (862)
+..+.-|+|.||||+||+|.++.|+..++.+. ++.+++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdll 64 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLL 64 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHH
Confidence 34556688999999999999999999987653 5555544
No 298
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.54 E-value=0.0036 Score=70.62 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=26.2
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
.++|+||||+|||||+++|+|...+..|.+.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~ 101 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAK 101 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEE
Confidence 7899999999999999999997665555544
No 299
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.52 E-value=0.01 Score=61.48 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=25.4
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCcee
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVNFF 458 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~~~ 458 (862)
.++.|.|+||+||||+++.|+..++.+.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~i 37 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQI 37 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCee
Confidence 46899999999999999999999876654
No 300
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.51 E-value=0.0056 Score=69.21 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=26.3
Q ss_pred ccccccCCe--EEEECCCCCchhHHHHHHHhh
Q 002961 423 RRGVRIPGG--ILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 423 ~l~i~~~~~--vlL~GpnGtGKTtLakaLA~~ 452 (862)
++.+..+.. ++|+||||+|||||+++|+|.
T Consensus 34 sl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 34 NKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 567777877 999999999999999999996
No 301
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.51 E-value=0.0047 Score=67.56 Aligned_cols=34 Identities=29% Similarity=0.267 Sum_probs=27.6
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceeee
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI 460 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i 460 (862)
..|.-++|+||||+||||+++.|++.+.+..+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V 160 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSV 160 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEE
Confidence 4566799999999999999999999875544443
No 302
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.51 E-value=0.0089 Score=63.35 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=26.0
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
.+++|+||||||||+|+++||..+.. .|.++.
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~ 136 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNW 136 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC-EEECCT
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcc-cceeec
Confidence 46999999999999999999997554 455543
No 303
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.51 E-value=0.0078 Score=61.98 Aligned_cols=31 Identities=32% Similarity=0.405 Sum_probs=26.4
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
+..|+|.|++|+||||+++.|+..++..++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 3568999999999999999999998865443
No 304
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.46 E-value=0.033 Score=56.24 Aligned_cols=108 Identities=21% Similarity=0.237 Sum_probs=60.2
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc---cCceeeeeccc---------chhhh-----------c--ccc----hhhHHHH
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQ---------FVEIY-----------V--GVG----ASRVRSL 480 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~---------~~~~~-----------~--gq~----~~~l~~~ 480 (862)
..|+++++||.||||++-.++-.+ |..++.+.... +...+ . .+. .......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 358999999999999998887543 55555553221 11111 0 000 1122444
Q ss_pred HHHHHh----cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccC
Q 002961 481 YQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVR 553 (862)
Q Consensus 481 f~~a~~----~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlr 553 (862)
+..++. ...++|++||+-....-... ....++..+.. .....-||.|+|.+ ++.|+.
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l-----------~~~ev~~~l~~--Rp~~~~vIlTGr~a---p~~l~e 169 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYL-----------PLEEVISALNA--RPGHQTVIITGRGC---HRDILD 169 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSS-----------CHHHHHHHHHT--SCTTCEEEEECSSC---CHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCC-----------CHHHHHHHHHh--CcCCCEEEEECCCC---cHHHHH
Confidence 444443 45789999999775432221 22345555543 33456778888763 444544
No 305
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.41 E-value=0.0078 Score=60.60 Aligned_cols=29 Identities=38% Similarity=0.587 Sum_probs=24.8
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
+..+.-++|+||+|+||||+++.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34556689999999999999999998874
No 306
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.38 E-value=0.0095 Score=62.61 Aligned_cols=33 Identities=30% Similarity=0.474 Sum_probs=25.9
Q ss_pred CCeEEEECCCCCchhHHHHHHHhh---ccCceeeee
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGE---AGVNFFSIS 461 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~---l~~~~~~i~ 461 (862)
+.-|+|+|+||+||||+++.|+.. .+.+++.++
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 346899999999999999999987 455554333
No 307
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.38 E-value=0.0088 Score=60.93 Aligned_cols=34 Identities=38% Similarity=0.603 Sum_probs=27.5
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceeeeecccch
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 466 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~~~ 466 (862)
.|+|.||||+||+|.++.|+..++.+. ++.+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 478999999999999999999987654 5555543
No 308
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.38 E-value=0.0077 Score=61.04 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=25.0
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
.|+|.|++|+||||+++.|+..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~ 30 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS 30 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 47999999999999999999988765543
No 309
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.35 E-value=0.01 Score=58.49 Aligned_cols=30 Identities=30% Similarity=0.143 Sum_probs=25.3
Q ss_pred eEEEECCCCCchhHHHHHHHhhc---cCceeee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSI 460 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i 460 (862)
.|+|+|++|+||||+++.|+..+ +.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 37899999999999999999987 6665544
No 310
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.35 E-value=0.0062 Score=61.11 Aligned_cols=29 Identities=21% Similarity=0.067 Sum_probs=24.7
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCc
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVN 456 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~ 456 (862)
.+..|+|+|++|+||||+++.|+..++..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 45568999999999999999999876543
No 311
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.34 E-value=0.0064 Score=59.74 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.9
Q ss_pred eEEEECCCCCchhHHHHHHHhhcc
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
.|+|.|++|+||||+++.|+..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999875
No 312
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.31 E-value=0.011 Score=59.81 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=24.0
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
..+.-++|+||+|+|||||++.|++...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3455689999999999999999998764
No 313
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.29 E-value=0.0069 Score=66.45 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=26.4
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
+.+..+..+.|+|+||+|||||+++|++.+.
T Consensus 50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 50 PQTGRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp GGCCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 4456677799999999999999999998764
No 314
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.27 E-value=0.013 Score=58.98 Aligned_cols=27 Identities=22% Similarity=0.071 Sum_probs=23.3
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
..+.-++|+|++|+||||+++.|++.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344568999999999999999999976
No 315
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.26 E-value=0.06 Score=68.09 Aligned_cols=148 Identities=14% Similarity=0.173 Sum_probs=78.4
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc---c----Cceeeeecccchhh-----------hcc-------cchhhHHHHHHH
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA---G----VNFFSISASQFVEI-----------YVG-------VGASRVRSLYQE 483 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l---~----~~~~~i~~~~~~~~-----------~~g-------q~~~~l~~~f~~ 483 (862)
+.-|.|+|+.|+||||||+.++... . .....++.+..... .++ .....+..+.+.
T Consensus 147 ~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 226 (1249)
T 3sfz_A 147 PGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDR 226 (1249)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHH
Confidence 3458899999999999999988752 1 11223333221000 000 000111222222
Q ss_pred HH---h--cCCceeEhHHHHHhhhhccCcCCCCchhHHHHHHHHHHhhccccCCCcEEEEEecCCCCCCCccccCCCCcc
Q 002961 484 AK---D--NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFD 558 (862)
Q Consensus 484 a~---~--~~p~iL~iDEid~l~~~~~~~~~Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tTN~~~~Ld~aLlrpgRfd 558 (862)
++ . ..+.+|+||+++... .++.+. .+..||.||........ +. ...
T Consensus 227 l~~~l~~~~~~~LlvlDd~~~~~-----------------------~~~~~~--~~~~ilvTtR~~~~~~~-~~---~~~ 277 (1249)
T 3sfz_A 227 LRVLMLRKHPRSLLILDDVWDPW-----------------------VLKAFD--NQCQILLTTRDKSVTDS-VM---GPK 277 (1249)
T ss_dssp HHHHTSSSSCSCEEEEESCCCHH-----------------------HHTTTC--SSCEEEEEESSTTTTTT-CC---SCB
T ss_pred HHHHHhccCCCEEEEEecCCCHH-----------------------HHHhhc--CCCEEEEEcCCHHHHHh-hc---CCc
Confidence 22 2 225688888875321 112222 24467777765443221 11 223
Q ss_pred ccccCCC-CCHHhHHHHHHHHHccCCCCCcccHHHHHhhcCCCCHHHHH
Q 002961 559 RKIFIPK-PGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELA 606 (862)
Q Consensus 559 ~~I~~~~-P~~~~R~~Il~~~l~~~~~~~~~dl~~lA~~t~G~s~adI~ 606 (862)
..+.++. .+.++-.++|..+..............+++.+.|. |-.|.
T Consensus 278 ~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl-PLal~ 325 (1249)
T 3sfz_A 278 HVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS-PLVVS 325 (1249)
T ss_dssp CCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC-HHHHH
T ss_pred eEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC-HHHHH
Confidence 4677775 78888889998777443322233467788888775 33343
No 316
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.24 E-value=0.011 Score=58.55 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=24.3
Q ss_pred EEEECCCCCchhHHHHHHHhhc---cCceeee
Q 002961 432 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSI 460 (862)
Q Consensus 432 vlL~GpnGtGKTtLakaLA~~l---~~~~~~i 460 (862)
|+|.|++|+||||+++.|+..+ +.+++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 7899999999999999999987 7666543
No 317
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.24 E-value=0.011 Score=60.83 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=26.8
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCcee
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF 458 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~ 458 (862)
..+..|+|+|++|+||||+++.|++.++.+++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~ 45 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYL 45 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 34456899999999999999999998886543
No 318
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.24 E-value=0.016 Score=66.09 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=21.1
Q ss_pred eEEEECCCCCchhHHHHHHHhhc
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l 453 (862)
.++|.|++|||||+++..++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998765
No 319
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.22 E-value=0.011 Score=61.34 Aligned_cols=29 Identities=24% Similarity=0.503 Sum_probs=25.3
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCce
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNF 457 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~ 457 (862)
+..++|.||+|+||||+++.|+..++..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~ 37 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARY 37 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 45689999999999999999999887654
No 320
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.22 E-value=0.025 Score=61.21 Aligned_cols=39 Identities=23% Similarity=0.170 Sum_probs=30.4
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeec
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISA 462 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~ 462 (862)
.|+.++.-++|.|+||+|||+|+..++... +.++++++.
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 567888889999999999999999888653 345555543
No 321
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.21 E-value=0.018 Score=65.38 Aligned_cols=39 Identities=26% Similarity=0.247 Sum_probs=30.6
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhc----cCceeeeec
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEA----GVNFFSISA 462 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l----~~~~~~i~~ 462 (862)
.|+.++.-++|.|+||+|||+|+..++... +.++++++.
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 467888889999999999999998888753 345666654
No 322
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.18 E-value=0.024 Score=64.35 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=43.5
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchh----------------hhc---ccch-hhHHHHHHHH
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVE----------------IYV---GVGA-SRVRSLYQEA 484 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~----------------~~~---gq~~-~~l~~~f~~a 484 (862)
.|.-|+++|++|+||||++..||..+ +..+..+.+..+.. .|. +... ..+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35668999999999999999998755 34444444332211 011 1111 1234566667
Q ss_pred HhcCCceeEhHHH
Q 002961 485 KDNAPSVVFIDEL 497 (862)
Q Consensus 485 ~~~~p~iL~iDEi 497 (862)
....++++++|..
T Consensus 179 ~~~~~DvVIIDTa 191 (443)
T 3dm5_A 179 KSKGVDIIIVDTA 191 (443)
T ss_dssp HHTTCSEEEEECC
T ss_pred HhCCCCEEEEECC
Confidence 6667889999965
No 323
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.17 E-value=0.015 Score=75.75 Aligned_cols=116 Identities=21% Similarity=0.218 Sum_probs=69.8
Q ss_pred ccccCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecccchh----------------hhcccchhhHHHHHHHHH
Q 002961 425 GVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVE----------------IYVGVGASRVRSLYQEAK 485 (862)
Q Consensus 425 ~i~~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~~~~~----------------~~~gq~~~~l~~~f~~a~ 485 (862)
|+..+.-|.|+||.|+|||||+-.++.+. +-...+++...-.. .+.+.+...+..+...++
T Consensus 1427 G~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~ 1506 (1706)
T 3cmw_A 1427 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1506 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHH
Confidence 34455559999999999999986665432 44555555432111 123334555666777788
Q ss_pred hcCCceeEhHHHHHhhhhccCcCC----CCchhHHHHHHHHHHhhccccCCCcEEEEEec
Q 002961 486 DNAPSVVFIDELDAVGRERGLIKG----SGGQERDATLNQLLVCLDGFEGRGNVITIAST 541 (862)
Q Consensus 486 ~~~p~iL~iDEid~l~~~~~~~~~----Sgge~~r~~l~~LL~~Ld~~~~~~~vlvI~tT 541 (862)
..+++++++|.+.++.+.....++ .-|-..|.+ .+.|..|.+.....++++|++.
T Consensus 1507 s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m-~~~lr~l~~~~~~~~~~~i~~~ 1565 (1706)
T 3cmw_A 1507 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMM-SQAMRKLAGNLKQSNTLLIFIN 1565 (1706)
T ss_dssp HTCCSEEEESCSTTCCCTTTTC-------CCHHHHHH-HHHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCEEEEccHHhCCccccccccccccchhHHHHHH-HHHHHHHHHHHHhCCcEEEEee
Confidence 899999999999998765433222 233344443 3334444444445566777764
No 324
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.16 E-value=0.011 Score=59.12 Aligned_cols=29 Identities=34% Similarity=0.575 Sum_probs=25.5
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
.|+|.|++|+||||+++.|++.++.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 57899999999999999999998866544
No 325
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.14 E-value=0.016 Score=65.58 Aligned_cols=26 Identities=38% Similarity=0.340 Sum_probs=22.4
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
.|.-++++|++|+||||++..||..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35568899999999999999999765
No 326
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.12 E-value=0.0097 Score=59.49 Aligned_cols=27 Identities=22% Similarity=0.097 Sum_probs=23.8
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccC
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGV 455 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~ 455 (862)
+..|+|.|++|+||||+++.|+..++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 346899999999999999999998765
No 327
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.11 E-value=0.0081 Score=64.69 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=26.4
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
..+..++|.||||+|||||+++|++...+..|.+..
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence 345678999999999999999999988877776654
No 328
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.11 E-value=0.012 Score=60.37 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=23.8
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCce
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNF 457 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~ 457 (862)
.|+|.|++|+||||+++.|+..++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~ 28 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAH 28 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 478999999999999999999887544
No 329
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.09 E-value=0.0079 Score=60.42 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=24.2
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccC
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGV 455 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~ 455 (862)
.|..|+|+|++|+||||+++.|+..++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4566899999999999999999987653
No 330
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.08 E-value=0.01 Score=65.56 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=27.0
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhcc-Cceeeeec
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAG-VNFFSISA 462 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~-~~~~~i~~ 462 (862)
.+..++|+||||+|||||+++|++... +..+.+..
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~ 249 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSN 249 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC----
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccccccCCccc
Confidence 345789999999999999999999887 76666653
No 331
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.05 E-value=0.013 Score=59.26 Aligned_cols=30 Identities=33% Similarity=0.422 Sum_probs=24.6
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
+..|+|+|++|+||||+++.|+. ++.+++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 34589999999999999999998 7665443
No 332
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.05 E-value=0.0013 Score=68.18 Aligned_cols=31 Identities=19% Similarity=0.105 Sum_probs=25.8
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCceeee
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSI 460 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i 460 (862)
.-++|+||||+|||||+++|++.+.+..+.+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i 58 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLL 58 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeE
Confidence 4467999999999999999999887665544
No 333
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.04 E-value=0.0064 Score=60.14 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=27.9
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCc---eeeeecc
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVN---FFSISAS 463 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~---~~~i~~~ 463 (862)
..+.|+|++|+|||||++.|++.+.+. .+.+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~d 39 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRH 39 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEc
Confidence 357899999999999999999988665 6776654
No 334
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.95 E-value=0.013 Score=57.87 Aligned_cols=28 Identities=32% Similarity=0.326 Sum_probs=24.1
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
..+..|+|+|++|+||||+++.|+..++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3455689999999999999999999874
No 335
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.95 E-value=0.015 Score=57.87 Aligned_cols=29 Identities=28% Similarity=0.298 Sum_probs=24.2
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCcee
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFF 458 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~ 458 (862)
+..|+|+|++||||||+++.|+.. +.+++
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~i 36 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVL 36 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEE
Confidence 345899999999999999999997 65543
No 336
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.93 E-value=0.0051 Score=66.64 Aligned_cols=36 Identities=31% Similarity=0.376 Sum_probs=23.1
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
+..+..++|+||||+|||||+++|++...+..+.+.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~ 205 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 205 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhccccccccccee
Confidence 345677899999999999999999998776666554
No 337
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.92 E-value=0.014 Score=63.67 Aligned_cols=32 Identities=38% Similarity=0.519 Sum_probs=27.4
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
..|+|+||+|+|||||++.||..++..++.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~D 37 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVD 37 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEecc
Confidence 36899999999999999999999886665554
No 338
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.74 E-value=0.021 Score=59.44 Aligned_cols=29 Identities=24% Similarity=0.222 Sum_probs=25.1
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCc
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVN 456 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~ 456 (862)
.+..|+|+|++|+||||+++.|+..++.+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 34468999999999999999999988765
No 339
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.70 E-value=0.015 Score=58.51 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=24.9
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
.|+|+|++||||||+++.|+..++.+++.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 47899999999999999999987766543
No 340
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.66 E-value=0.023 Score=61.92 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.8
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
|.-++|.||+|||||||++.|++.+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34588999999999999999999875
No 341
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.62 E-value=0.013 Score=59.26 Aligned_cols=29 Identities=24% Similarity=0.153 Sum_probs=24.8
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
+..+.-|+|+|++|+||||+++.|++.++
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34556689999999999999999999775
No 342
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.57 E-value=0.063 Score=62.56 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.5
Q ss_pred CCeEEEECCCCCchhHHHHHHHh
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAG 451 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~ 451 (862)
...|.|+|+.|+||||||+.+++
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 34588999999999999999995
No 343
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.53 E-value=0.017 Score=57.42 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=21.0
Q ss_pred eEEEECCCCCchhHHHHHHHhhc
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l 453 (862)
.++|+|+||+|||||++.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999999863
No 344
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.51 E-value=0.015 Score=62.71 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=26.9
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccCceeeeec
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 462 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~ 462 (862)
.+..++|.||||+|||||+++|+ ...+..+.+..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~ 197 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEELRTQEVSE 197 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC--
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-HhhCccccccc
Confidence 34568999999999999999999 77776666654
No 345
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.46 E-value=0.055 Score=55.93 Aligned_cols=32 Identities=25% Similarity=0.219 Sum_probs=25.6
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
.+++|+||+|+|||.++-.++...+...+.+.
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~ 140 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 45899999999999999888877765555554
No 346
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.45 E-value=0.014 Score=60.07 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=23.0
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhh
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
..+.-+.|.|++|+||||+++.|++.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44556899999999999999999987
No 347
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.43 E-value=0.0095 Score=65.64 Aligned_cols=29 Identities=24% Similarity=0.554 Sum_probs=25.9
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
.++|+|++|+||||++++|++.++.+++.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 48999999999999999999998877644
No 348
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.41 E-value=0.024 Score=56.83 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=20.9
Q ss_pred EEEECCCCCchhHHHHHHHhhcc
Q 002961 432 ILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 432 vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
|+|+||+|+|||||++.|.....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999987754
No 349
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.40 E-value=0.017 Score=57.14 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.5
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
-.++|+|+||+|||||++.+++..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999999864
No 350
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.16 E-value=0.03 Score=56.56 Aligned_cols=30 Identities=37% Similarity=0.511 Sum_probs=25.8
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
..|+|+|++|+||||+++.|+..++.+++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 468999999999999999999988866543
No 351
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.12 E-value=0.027 Score=61.68 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=27.1
Q ss_pred CeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
.-|+|+||+|+|||+|+..||..++..++..+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~D 72 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSD 72 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccc
Confidence 35889999999999999999999886665543
No 352
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.11 E-value=0.019 Score=62.30 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=20.9
Q ss_pred eEEEECCCCCchhHHHHHHHhhc
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l 453 (862)
-++|+|++|+|||||++.|++..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999999999999999875
No 353
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=94.09 E-value=0.0097 Score=66.56 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=26.9
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhhccC
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV 455 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~ 455 (862)
++.+..+ .++|+||||+|||||+++|.+.++.
T Consensus 55 ~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 55 ELELGGG-FCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp EEECCSS-EEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred EEecCCC-cEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4556666 7899999999999999999887754
No 354
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.07 E-value=0.025 Score=54.38 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.0
Q ss_pred eEEEECCCCCchhHHHHHHHhhc
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l 453 (862)
-.+|+||||+||||++.+|.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998644
No 355
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.02 E-value=0.027 Score=63.50 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.9
Q ss_pred EEEECCCCCchhHHHHHHHhhcc
Q 002961 432 ILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 432 vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
|+|+|+||+|||||++.|++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 59999999999999999998754
No 356
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.97 E-value=0.08 Score=56.88 Aligned_cols=25 Identities=40% Similarity=0.361 Sum_probs=22.4
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
+..++++|++|+||||++..||+.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5668899999999999999999866
No 357
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.96 E-value=0.013 Score=58.94 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.0
Q ss_pred eEEEECCCCCchhHHHHHHHhhccC
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGV 455 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~ 455 (862)
-|+|.|++|+||||+++.|+..++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3689999999999999999988753
No 358
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.86 E-value=0.03 Score=57.75 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=24.6
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccC
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGV 455 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~ 455 (862)
.+.-|+|.|++|+||||+++.|+..++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4556889999999999999999998864
No 359
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=93.86 E-value=0.022 Score=67.41 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=22.1
Q ss_pred EEEECCCCCchhHHHHHHHhhccC-ceeeee
Q 002961 432 ILLCGPPGVGKTLLAKAVAGEAGV-NFFSIS 461 (862)
Q Consensus 432 vlL~GpnGtGKTtLakaLA~~l~~-~~~~i~ 461 (862)
++|+||||+|||||+++|+|...+ ..|.+.
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt 78 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVT 78 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CC
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEE
Confidence 899999999999999999998644 355543
No 360
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.84 E-value=0.03 Score=61.36 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=24.3
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCcee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFF 458 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~ 458 (862)
-|+|+||+|+|||||++.|+..++..++
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~ii 36 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEII 36 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEE
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCcee
Confidence 5789999999999999999999875443
No 361
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.82 E-value=0.028 Score=62.23 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.0
Q ss_pred eEEEECCCCCchhHHHHHHHhhc
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l 453 (862)
-.+|+||||+|||||+.+|+..+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999998653
No 362
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.82 E-value=0.032 Score=59.40 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=23.9
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCcee
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFF 458 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~ 458 (862)
+..|+|+|++||||||+++.|+ .++.+++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~i 103 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYII 103 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEE
Confidence 3458999999999999999999 5665543
No 363
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.81 E-value=0.038 Score=62.21 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=26.3
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhccCce
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF 457 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~~ 457 (862)
...+.-|+|+|+||+||||+++.|+..++..+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~ 286 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVH 286 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEE
Confidence 34456688999999999999999999876543
No 364
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.78 E-value=0.035 Score=60.06 Aligned_cols=33 Identities=36% Similarity=0.536 Sum_probs=26.9
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccCceeeee
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 461 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~~~~~i~ 461 (862)
+.-++|+||+|+|||+|+..||..++..++..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~D 42 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVD 42 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecc
Confidence 345789999999999999999999876654443
No 365
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.77 E-value=0.025 Score=67.66 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.9
Q ss_pred ccccccCCeEEEECCCCCchhHHH
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLA 446 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLa 446 (862)
++.+..++.++|+||||+|||||+
T Consensus 38 sl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 38 DVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHH
T ss_pred EEEECCCCEEEEECCCCCCHHHHh
Confidence 577888889999999999999997
No 366
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.69 E-value=0.028 Score=59.81 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.3
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
.-|+|.|+||+||||+++.|+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 457899999999999999999853
No 367
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.64 E-value=0.08 Score=59.95 Aligned_cols=35 Identities=37% Similarity=0.341 Sum_probs=26.7
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeec
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISA 462 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~ 462 (862)
.+..|+|+|++|+||||++..||+.+ +..+..+++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 34579999999999999999999875 344444443
No 368
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.63 E-value=0.032 Score=59.84 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=24.1
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhccC
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAGV 455 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~~ 455 (862)
.|.-|+|.|++|+|||||++.|++.++.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3456899999999999999999998754
No 369
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.51 E-value=0.021 Score=66.66 Aligned_cols=32 Identities=28% Similarity=0.291 Sum_probs=27.2
Q ss_pred ccccCCeEEEECCCCCchhHHHHHHHhhccCc
Q 002961 425 GVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN 456 (862)
Q Consensus 425 ~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~ 456 (862)
.+..+..++|+|+||+|||||+++|++.+++.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 34566779999999999999999999998654
No 370
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.47 E-value=0.036 Score=53.27 Aligned_cols=23 Identities=43% Similarity=0.642 Sum_probs=20.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
..|+|+|++|+|||||++.+++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999984
No 371
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.47 E-value=0.079 Score=60.21 Aligned_cols=38 Identities=24% Similarity=0.190 Sum_probs=30.2
Q ss_pred ccccCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeec
Q 002961 425 GVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISA 462 (862)
Q Consensus 425 ~i~~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~ 462 (862)
|+.++.-++|.|+||+|||+|+-.+|... +.++++++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 67888889999999999999998887654 455666644
No 372
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.45 E-value=0.033 Score=54.09 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.6
Q ss_pred CCeEEEECCCCCchhHHHHHHHhh
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
+..|+|+|++|+|||||++.|++.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999985
No 373
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=93.39 E-value=0.04 Score=62.14 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=26.3
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhccCc
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN 456 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~~~ 456 (862)
+.+..+.-++|+||||+|||||+++|++.+++.
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 334445678999999999999999999977654
No 374
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.39 E-value=0.064 Score=65.25 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=20.6
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhh
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
.+..++++||+|+||||++..++..
T Consensus 108 ~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 108 NNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999988877654
No 375
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.38 E-value=0.048 Score=55.26 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=23.7
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
.+.+|+|+||+|+|||+|+..|+....
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 356799999999999999999998755
No 376
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.34 E-value=0.049 Score=59.01 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=24.6
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
-|+|.||+|+|||+|+..||..++..++.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis 33 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVIS 33 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEE
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceee
Confidence 47899999999999999999988755443
No 377
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.32 E-value=0.044 Score=54.23 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=22.0
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
...++|+|++|+|||||++.|++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3468899999999999999999875
No 378
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.26 E-value=0.11 Score=56.74 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=23.6
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhc
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
...+..++|+|+||+|||||++.|++.+
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3445668999999999999999999765
No 379
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.25 E-value=0.042 Score=59.72 Aligned_cols=31 Identities=23% Similarity=0.115 Sum_probs=25.7
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
+....+..++|+|++|+||||++..||+.+.
T Consensus 100 ~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 100 FKENRLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp CCTTSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3345667789999999999999999998763
No 380
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.24 E-value=0.038 Score=54.06 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.4
Q ss_pred eEEEECCCCCchhHHHHHHHhh
Q 002961 431 GILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~ 452 (862)
.|+|+|++|+|||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999984
No 381
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=93.13 E-value=0.04 Score=60.96 Aligned_cols=23 Identities=30% Similarity=0.203 Sum_probs=20.6
Q ss_pred eEEEECCCCCchhHHHHHHHhhc
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l 453 (862)
-.+|+||||+||||++++|....
T Consensus 28 ~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHhc
Confidence 57899999999999999998754
No 382
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.05 E-value=0.046 Score=53.19 Aligned_cols=23 Identities=43% Similarity=0.642 Sum_probs=20.9
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
..|+|+|++|+|||||++.+++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999984
No 383
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=92.98 E-value=0.064 Score=59.97 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.8
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhh
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
..+..++|+|+||+|||||+++|++.
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 44567899999999999999999983
No 384
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.84 E-value=0.073 Score=61.28 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=30.2
Q ss_pred ccccCCeEEEECCCCCchhHHHHHHHhhc----cCceeeeecc
Q 002961 425 GVRIPGGILLCGPPGVGKTLLAKAVAGEA----GVNFFSISAS 463 (862)
Q Consensus 425 ~i~~~~~vlL~GpnGtGKTtLakaLA~~l----~~~~~~i~~~ 463 (862)
|+..+.-++|.|+||+|||+|+-.++..+ +.++++++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 67777789999999999999998887654 3456666543
No 385
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.84 E-value=0.054 Score=57.95 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=23.3
Q ss_pred CeEEEECCCCCchhHHHHHHHhhcc---Cceeeeeccc
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEAG---VNFFSISASQ 464 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l~---~~~~~i~~~~ 464 (862)
.-|+|.||+|+||||+++.|+..++ ..+..++...
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~ 43 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA 43 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecch
Confidence 3588999999999999999998765 2334444443
No 386
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=92.77 E-value=0.052 Score=54.85 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=20.6
Q ss_pred eEEEECCCCCchhHHHHHHHhhcc
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
-.+|+||||+||||++.+|.-.+.
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 468999999999999999976554
No 387
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.68 E-value=0.062 Score=61.26 Aligned_cols=27 Identities=37% Similarity=0.445 Sum_probs=23.1
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
-.+.+++|+|++|+|||||++.|+...
T Consensus 149 ~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 149 IKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp ETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 346679999999999999999998754
No 388
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.66 E-value=0.041 Score=59.23 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=19.4
Q ss_pred eEEEECCCCCchhHHHHHHHhh
Q 002961 431 GILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~ 452 (862)
.|+|+|+||+|||||++.|++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3599999999999999999885
No 389
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.49 E-value=0.14 Score=59.04 Aligned_cols=35 Identities=29% Similarity=0.237 Sum_probs=25.5
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeec
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISA 462 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~ 462 (862)
.+..|+|+|++|+||||++..|+..+ +..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45578999999999999999999654 444444444
No 390
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.44 E-value=0.06 Score=58.32 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.7
Q ss_pred eEEEECCCCCchhHHHHHHHhhc
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l 453 (862)
-.+|+||||+|||+|+++|..-+
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTS
T ss_pred cEEEECCCCCcHHHHHHHHHHHh
Confidence 67899999999999999998654
No 391
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.35 E-value=0.067 Score=50.61 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+++|++|+|||||++.+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
No 392
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.32 E-value=0.069 Score=50.20 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.4
Q ss_pred eEEEECCCCCchhHHHHHHHhh
Q 002961 431 GILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~ 452 (862)
+|+++|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 393
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=92.31 E-value=0.059 Score=60.74 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=26.2
Q ss_pred ccccccCCeEEEECCCCCchhHHHHHHHhh
Q 002961 423 RRGVRIPGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 423 ~l~i~~~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
++.++....|+|+|+||+|||||+++|++.
T Consensus 151 ~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 151 RLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 456666778999999999999999999986
No 394
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.27 E-value=0.074 Score=53.66 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=26.3
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
-|.|.|+.||||||+++.||..++.+++-
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 57899999999999999999999988763
No 395
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.16 E-value=0.042 Score=58.95 Aligned_cols=27 Identities=30% Similarity=0.129 Sum_probs=23.5
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
.+..++++|++|+||||++..||+.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 556688999999999999999999763
No 396
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.12 E-value=0.076 Score=49.98 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.5
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+|+|++|+|||||++.+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 397
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.11 E-value=0.072 Score=50.84 Aligned_cols=23 Identities=52% Similarity=0.749 Sum_probs=20.8
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-.|+|+|++|+|||||++.+.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 36899999999999999999875
No 398
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.04 E-value=0.086 Score=51.55 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=22.5
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhc
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
....|+|+|++|+|||||++.+.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999999854
No 399
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.96 E-value=0.08 Score=50.16 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=20.2
Q ss_pred eEEEECCCCCchhHHHHHHHhh
Q 002961 431 GILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~ 452 (862)
+|+++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 400
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.95 E-value=0.08 Score=49.87 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+++|++|+|||||++.+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999874
No 401
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=91.93 E-value=0.071 Score=58.19 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=19.5
Q ss_pred eEEEECCCCCchhHHHHHHHhhc
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l 453 (862)
-.+|+||||+||||++.+|...+
T Consensus 25 ~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999986543
No 402
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.92 E-value=0.074 Score=49.90 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.3
Q ss_pred eEEEECCCCCchhHHHHHHHhh
Q 002961 431 GILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~ 452 (862)
+|+++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 403
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.91 E-value=0.082 Score=50.08 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.2
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
-+|+++|++|+|||||++.+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
No 404
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.89 E-value=0.077 Score=59.37 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=24.6
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
-|+|.||+|+|||||+..|+..++..++.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~iis 32 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVIN 32 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEEEEE
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCeEee
Confidence 47899999999999999999988765433
No 405
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.89 E-value=0.076 Score=58.33 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.0
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
+..|.|+|+||+|||||++.|++.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3458999999999999999999865
No 406
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.87 E-value=0.064 Score=50.85 Aligned_cols=22 Identities=50% Similarity=0.859 Sum_probs=20.2
Q ss_pred eEEEECCCCCchhHHHHHHHhh
Q 002961 431 GILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~ 452 (862)
+|+|+|++|+|||||++.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 6899999999999999999864
No 407
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.82 E-value=0.084 Score=49.92 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=20.2
Q ss_pred eEEEECCCCCchhHHHHHHHhh
Q 002961 431 GILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~ 452 (862)
+|+++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 408
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.81 E-value=0.097 Score=50.17 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.8
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhh
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
.+..|+|+|++|+|||||++.+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999874
No 409
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.79 E-value=0.091 Score=51.78 Aligned_cols=32 Identities=22% Similarity=0.162 Sum_probs=24.9
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc---cCceeeee
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSIS 461 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~ 461 (862)
..+.|+|++|+|||||+..|+..+ +..++.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 357899999999999999999875 33444444
No 410
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.79 E-value=0.082 Score=50.24 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=19.8
Q ss_pred eEEEECCCCCchhHHHHHHHhh
Q 002961 431 GILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~ 452 (862)
+|+|+|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999753
No 411
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.75 E-value=0.082 Score=54.24 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
.+|+|+|++|+|||||++.|.+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 468999999999999999999854
No 412
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.73 E-value=0.11 Score=51.70 Aligned_cols=32 Identities=34% Similarity=0.483 Sum_probs=26.7
Q ss_pred EEEECCCCCchhHHHHHHHhhccCceeeeeccc
Q 002961 432 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 464 (862)
Q Consensus 432 vlL~GpnGtGKTtLakaLA~~l~~~~~~i~~~~ 464 (862)
++++|++|+|||+++..++.. +.+.+++..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999977 76777776543
No 413
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.72 E-value=0.088 Score=50.42 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.6
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+|+|++|+|||||++.+.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 414
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.72 E-value=0.089 Score=49.94 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=20.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+++|++|+|||||++.+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999875
No 415
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.67 E-value=0.081 Score=50.12 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=20.2
Q ss_pred eEEEECCCCCchhHHHHHHHhh
Q 002961 431 GILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~ 452 (862)
+|+++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 416
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.64 E-value=0.19 Score=55.10 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.3
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
..|+|+|++|+|||||+..|+..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998764
No 417
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.58 E-value=0.093 Score=49.54 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.2
Q ss_pred eEEEECCCCCchhHHHHHHHhh
Q 002961 431 GILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~ 452 (862)
+|+++|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
No 418
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.56 E-value=0.08 Score=50.74 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+|+|++|+|||||++.+.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 419
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.54 E-value=0.094 Score=50.27 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+++|++|+|||||++.+.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999874
No 420
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.49 E-value=0.09 Score=54.63 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=23.5
Q ss_pred cccCCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 426 VRIPGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 426 i~~~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
...+.-|.|.|++|+||||+++.|+..+.
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34456689999999999999999998763
No 421
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.48 E-value=0.081 Score=55.60 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=21.4
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
..|+|+|++|+|||||+++|++..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999863
No 422
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.47 E-value=0.1 Score=49.56 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCchhHHHHHHHhh
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
.-+|+++|++|+|||||++.+.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999764
No 423
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.42 E-value=0.098 Score=49.43 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.5
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+|+|++|+|||||++.+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999863
No 424
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.36 E-value=0.11 Score=52.05 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=22.1
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
...|+|+|++|+|||||++.+.+..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999999864
No 425
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.30 E-value=0.1 Score=49.24 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.9
Q ss_pred eEEEECCCCCchhHHHHHHHhh
Q 002961 431 GILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~ 452 (862)
+|+++|++|+|||+|++.+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
No 426
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.30 E-value=0.11 Score=49.74 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.6
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-.|+|+|++|+|||||++.+.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 427
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.27 E-value=0.1 Score=50.55 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=20.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+|+|++|+|||||++.+.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 428
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.25 E-value=0.1 Score=50.37 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+|+|++|+|||||++.+.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999874
No 429
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.22 E-value=0.24 Score=56.12 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=27.4
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc----cCceeeeecc
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA----GVNFFSISAS 463 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l----~~~~~~i~~~ 463 (862)
..+..|+++|++|+||||++-.||..+ +..+..+++.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 345678899999999999998888654 4455555544
No 430
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.17 E-value=0.099 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.8
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
.+|+|+|++|+|||||++.+.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999875
No 431
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.15 E-value=0.11 Score=50.66 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.4
Q ss_pred CCeEEEECCCCCchhHHHHHHHhh
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
.-+|+|+|++|+|||||++.+.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999885
No 432
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.14 E-value=0.11 Score=50.67 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.0
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhh
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
....|+|+|++|+|||||++.+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999875
No 433
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=91.12 E-value=0.089 Score=56.46 Aligned_cols=23 Identities=39% Similarity=0.670 Sum_probs=21.0
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
..|+|+|+||+|||||+++|.+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 35899999999999999999985
No 434
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=91.09 E-value=0.17 Score=56.39 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.7
Q ss_pred cccccCCeEEEECCCCCchhHHHHHHHhhc
Q 002961 424 RGVRIPGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 424 l~i~~~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
+.+..+.+++|+||+|+|||||++.|++.+
T Consensus 169 ~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 169 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 445667889999999999999999998864
No 435
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.02 E-value=0.11 Score=50.79 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.8
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-.|+|+|++|+|||||++.+.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 436
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.01 E-value=0.11 Score=49.55 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.8
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+|+|++|+|||||++.+.+.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 437
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.93 E-value=0.11 Score=49.75 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.5
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+|+|++|+|||||++.+.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 438
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.88 E-value=0.12 Score=50.42 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.8
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+++|++|+|||||++.+++.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999875
No 439
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.87 E-value=0.11 Score=51.59 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.0
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhh
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
.+.+++|.|++|+||||++..+...
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4568999999999999999998874
No 440
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.84 E-value=0.16 Score=50.90 Aligned_cols=24 Identities=21% Similarity=0.033 Sum_probs=19.0
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
.-.+++||.|+||||.+-.++..+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 346899999999999887776654
No 441
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.82 E-value=0.11 Score=53.49 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=23.0
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
|..|+|.|+.|+||||+++.|+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34589999999999999999999874
No 442
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=90.81 E-value=0.64 Score=45.87 Aligned_cols=17 Identities=29% Similarity=0.347 Sum_probs=14.7
Q ss_pred CCeEEEECCCCCchhHH
Q 002961 429 PGGILLCGPPGVGKTLL 445 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtL 445 (862)
+..+++.+|+|+|||..
T Consensus 38 ~~~~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLA 54 (207)
T ss_dssp TCCEEEECCTTSCHHHH
T ss_pred CCCEEEECCCCChHHHH
Confidence 35689999999999975
No 443
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.81 E-value=0.1 Score=50.67 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=20.3
Q ss_pred eEEEECCCCCchhHHHHHHHhh
Q 002961 431 GILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~ 452 (862)
+|+++|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999875
No 444
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=90.77 E-value=3.2 Score=45.25 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=21.8
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
+..++|+|+||+|||||++.|++..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999853
No 445
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.77 E-value=0.077 Score=55.47 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=23.7
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
.+..|+|.|+.|+||||+++.|+..+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 445689999999999999999999873
No 446
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=90.76 E-value=0.17 Score=56.54 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.3
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhh
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
..+..++|+|+||+|||||+++|++.
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 44567899999999999999999986
No 447
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.73 E-value=0.12 Score=50.14 Aligned_cols=24 Identities=29% Similarity=0.213 Sum_probs=21.3
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
-+|+|+|++|+|||||++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 368999999999999999998754
No 448
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.73 E-value=0.12 Score=49.66 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.8
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
.+|+|+|++|+|||||++.+.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46899999999999999999874
No 449
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.70 E-value=0.13 Score=49.47 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+|+|++|+|||||++.+.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
No 450
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=90.68 E-value=0.14 Score=60.58 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=28.5
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc---cCceeeee
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSIS 461 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~ 461 (862)
+.-|+|+|.+|+||||+++.|+..+ +.+++.++
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 4458999999999999999999988 77777765
No 451
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.59 E-value=0.11 Score=50.51 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.5
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
.+|+|+|++|+|||||++.+.+.-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 469999999999999999998753
No 452
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.58 E-value=0.13 Score=49.34 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+|+|++|+|||||++.+.+.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999874
No 453
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.51 E-value=0.1 Score=50.86 Aligned_cols=24 Identities=46% Similarity=0.484 Sum_probs=21.4
Q ss_pred CCeEEEECCCCCchhHHHHHHHhh
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
...|+|+|++|+|||||++.+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999875
No 454
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=90.49 E-value=0.36 Score=47.83 Aligned_cols=24 Identities=38% Similarity=0.628 Sum_probs=19.2
Q ss_pred CCeEEEECCCCCchhHHHHHHHhh
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
+.++++.+|+|+|||.++-.++..
T Consensus 48 ~~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 48 GKNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999987666543
No 455
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.49 E-value=0.12 Score=49.93 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-.|+|+|++|+|||||++.+.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 456
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.49 E-value=0.12 Score=50.25 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+|+|++|+|||||++.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 457
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.47 E-value=0.13 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.9
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
..|+++|++|+|||||++.+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999873
No 458
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.45 E-value=0.14 Score=49.54 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.6
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+|+|++|+|||||++.+.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 459
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=90.33 E-value=0.12 Score=56.96 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=18.8
Q ss_pred eEEEECCCCCchhHHHHHHHh
Q 002961 431 GILLCGPPGVGKTLLAKAVAG 451 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~ 451 (862)
-.+|+|+||+|||+++.+|.-
T Consensus 27 l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 27 IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999975
No 460
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.29 E-value=0.14 Score=49.26 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.4
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+++|++|+|||||++.+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 461
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.26 E-value=0.14 Score=50.36 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=22.1
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhh
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
...-+|+|+|++|+|||||++.+.+.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhC
Confidence 44557999999999999999999753
No 462
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.26 E-value=0.14 Score=49.90 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=20.8
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+|+|++|+|||||++.+.+.
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
No 463
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.25 E-value=0.14 Score=49.89 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=20.9
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+|+|++|+|||||++.+.+.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 464
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.22 E-value=0.2 Score=54.83 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=31.2
Q ss_pred ccccCCeEEEECCCCCchhHHHHHHHhhc---cCceeeeecc
Q 002961 425 GVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISAS 463 (862)
Q Consensus 425 ~i~~~~~vlL~GpnGtGKTtLakaLA~~l---~~~~~~i~~~ 463 (862)
|+.++.-++|.|+||+|||||+..+|..+ +.++.+++..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 67888889999999999999999998764 4555566543
No 465
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.22 E-value=0.15 Score=50.01 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=19.6
Q ss_pred eEEEECCCCCchhHHHHHHHhh
Q 002961 431 GILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~ 452 (862)
+|+|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999887764
No 466
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.21 E-value=0.16 Score=48.75 Aligned_cols=24 Identities=25% Similarity=0.163 Sum_probs=21.2
Q ss_pred CCeEEEECCCCCchhHHHHHHHhh
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
.-+|+|+|++|+|||||++.+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999864
No 467
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.18 E-value=0.15 Score=50.36 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.8
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+|+|++|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999875
No 468
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.13 E-value=0.15 Score=50.23 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.6
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-.|+|+|++|+|||||++.+.+.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 469
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.09 E-value=0.15 Score=50.31 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=20.8
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+|+|++|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 470
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.07 E-value=0.089 Score=50.76 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=21.1
Q ss_pred cCCeEEEECCCCCchhHHHHHHHh
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAG 451 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~ 451 (862)
..-.|+|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999985
No 471
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.04 E-value=0.14 Score=49.56 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=22.3
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhhc
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
...-+|+++|++|+|||||++.+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 344579999999999999999998743
No 472
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.99 E-value=0.14 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+|+|++|+|||||++.+.+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 473
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.96 E-value=0.14 Score=50.08 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.3
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
-+|+|+|++|+|||||++.+.+..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 474
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=89.87 E-value=0.16 Score=52.17 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=26.0
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 459 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~ 459 (862)
-|.|.|++||||||+++.||..++.+++.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 57899999999999999999999987644
No 475
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=89.84 E-value=0.18 Score=58.37 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=23.1
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhccC
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAGV 455 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~~ 455 (862)
+.-|+|+|.||+||||+++.|+..++.
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345889999999999999999988743
No 476
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.82 E-value=0.16 Score=49.72 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=20.9
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+|+|++|+|||||++.+.+.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 477
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.80 E-value=0.16 Score=49.57 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+|+|++|+|||||++.+.+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 478
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=89.79 E-value=0.15 Score=53.93 Aligned_cols=22 Identities=41% Similarity=0.604 Sum_probs=20.5
Q ss_pred eEEEECCCCCchhHHHHHHHhh
Q 002961 431 GILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~ 452 (862)
.|+|+|+||+|||||++.+++.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999985
No 479
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=89.79 E-value=0.16 Score=50.10 Aligned_cols=23 Identities=43% Similarity=0.614 Sum_probs=20.5
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-.|+|+|++|+|||||++.+.+.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999863
No 480
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.78 E-value=0.16 Score=52.40 Aligned_cols=27 Identities=22% Similarity=0.078 Sum_probs=20.1
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
.+.-|.|.|++|+||||+++.|+..+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345588999999999999999998763
No 481
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.74 E-value=0.17 Score=49.36 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.6
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+|+|++|+|||||++.+.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 482
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.74 E-value=0.17 Score=49.77 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.8
Q ss_pred cCCeEEEECCCCCchhHHHHHHHhh
Q 002961 428 IPGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 428 ~~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
..-+|+|+|++|+|||||++.+.+.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999874
No 483
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=89.73 E-value=0.17 Score=51.52 Aligned_cols=29 Identities=34% Similarity=0.439 Sum_probs=24.9
Q ss_pred eEEEECCCCCchhHHHHHHHhhccCceeee
Q 002961 431 GILLCGPPGVGKTLLAKAVAGEAGVNFFSI 460 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~l~~~~~~i 460 (862)
.|.|+|..||||||+++.++. +|.+++..
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vida 39 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDT 39 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEEC
Confidence 489999999999999999987 78776543
No 484
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.72 E-value=0.15 Score=49.03 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.0
Q ss_pred CeEEEECCCCCchhHHHHHHHh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAG 451 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~ 451 (862)
.+|+|+|++|+|||||++.+.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3689999999999999999985
No 485
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.72 E-value=0.15 Score=49.76 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-.|+|+|++|+|||||++.+.+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 46899999999999999999873
No 486
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.72 E-value=0.17 Score=49.25 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.9
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+|+|++|+|||||++.+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 487
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=89.72 E-value=0.13 Score=49.45 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=20.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-.|+|+|++|+|||+|++.+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999874
No 488
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.70 E-value=0.15 Score=50.38 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.4
Q ss_pred CCeEEEECCCCCchhHHHHHHHhh
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
.-+|+|+|++|+|||||++.+.+.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 346899999999999999999875
No 489
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.65 E-value=0.17 Score=49.48 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-+|+|+|++|+|||||++.+.+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 490
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=89.58 E-value=0.18 Score=49.42 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.4
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-.|+|+|++|+|||||++.+.+.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 36899999999999999999864
No 491
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.57 E-value=0.12 Score=51.36 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.2
Q ss_pred CeEEEECCCCCchhHHHHHHHh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAG 451 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~ 451 (862)
..|+|+|++|+|||||++.+.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999986
No 492
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=89.52 E-value=0.18 Score=49.82 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=21.5
Q ss_pred ccCCeEEEECCCCCchhHHHHHHHhh
Q 002961 427 RIPGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 427 ~~~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
...-.|+|+|++|+|||||++.+.+.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34457999999999999999999864
No 493
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=89.48 E-value=0.16 Score=53.14 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=20.6
Q ss_pred eEEEECCCCCchhHHHHHHHhh
Q 002961 431 GILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~ 452 (862)
.|+|+|++|+|||||++.|.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999986
No 494
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=89.46 E-value=0.17 Score=52.49 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=21.9
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhc
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
.-+|+|+|.+|+|||||++.|.+.-
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468999999999999999998853
No 495
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.41 E-value=0.18 Score=51.44 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=22.5
Q ss_pred CCeEEEECCCCCchhHHHHHHHhhcc
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGEAG 454 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~l~ 454 (862)
+.-|.|.|++|+||||+++.|+..+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999998764
No 496
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.37 E-value=0.18 Score=49.92 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCchhHHHHHHHhh
Q 002961 429 PGGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 429 ~~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
.-.|+|+|++|+|||||++.+.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 497
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.36 E-value=0.17 Score=50.15 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.7
Q ss_pred CeEEEECCCCCchhHHHHHHHhh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~ 452 (862)
-.|+|+|++|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 498
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.34 E-value=0.13 Score=50.88 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=19.9
Q ss_pred CeEEEECCCCCchhHHHHHHHh
Q 002961 430 GGILLCGPPGVGKTLLAKAVAG 451 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~ 451 (862)
-.|+|+|++|+|||||++.+++
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999975
No 499
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=89.14 E-value=0.17 Score=49.78 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.8
Q ss_pred eEEEECCCCCchhHHHHHHHhh
Q 002961 431 GILLCGPPGVGKTLLAKAVAGE 452 (862)
Q Consensus 431 ~vlL~GpnGtGKTtLakaLA~~ 452 (862)
+|+|+|++|+|||||++.+.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 500
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=89.13 E-value=0.17 Score=57.13 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.6
Q ss_pred CeEEEECCCCCchhHHHHHHHhhc
Q 002961 430 GGILLCGPPGVGKTLLAKAVAGEA 453 (862)
Q Consensus 430 ~~vlL~GpnGtGKTtLakaLA~~l 453 (862)
..++|+|+||+|||||++.|++..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 468999999999999999999864
Done!