Query 002962
Match_columns 862
No_of_seqs 714 out of 3645
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 14:16:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02318 phosphoribulokinase/u 100.0 3.1E-76 6.6E-81 669.5 20.7 375 482-861 30-407 (656)
2 PLN02318 phosphoribulokinase/u 100.0 3.9E-58 8.6E-63 521.8 15.9 365 28-398 31-413 (656)
3 KOG2878 Predicted kinase [Gene 100.0 2.6E-34 5.6E-39 283.1 3.1 223 515-764 29-280 (282)
4 COG0572 Udk Uridine kinase [Nu 100.0 8.1E-34 1.8E-38 290.2 4.7 174 515-690 6-191 (218)
5 PLN03046 D-glycerate 3-kinase; 100.0 7.1E-31 1.5E-35 289.5 0.7 231 502-763 192-457 (460)
6 PTZ00301 uridine kinase; Provi 100.0 8.3E-30 1.8E-34 264.2 5.5 172 517-690 3-190 (210)
7 COG1437 CyaB Adenylate cyclase 100.0 3.3E-29 7E-34 246.2 8.8 141 248-397 22-177 (178)
8 PLN02796 D-glycerate 3-kinase 100.0 4.3E-30 9.3E-35 280.4 2.8 230 502-762 80-344 (347)
9 PF00485 PRK: Phosphoribulokin 99.9 3.4E-29 7.5E-34 257.5 3.8 171 519-691 1-190 (194)
10 PLN02348 phosphoribulokinase 99.9 1.1E-27 2.5E-32 264.7 10.1 232 508-759 40-306 (395)
11 COG4240 Predicted kinase [Gene 99.9 1.1E-28 2.4E-33 248.1 1.4 223 513-760 46-292 (300)
12 PRK05439 pantothenate kinase; 99.9 2.5E-27 5.3E-32 257.6 6.2 220 10-229 10-301 (311)
13 COG0572 Udk Uridine kinase [Nu 99.9 9.7E-27 2.1E-31 238.3 8.2 167 60-227 6-191 (218)
14 PRK05439 pantothenate kinase; 99.9 1.8E-27 3.9E-32 258.7 2.5 240 455-695 12-304 (311)
15 cd02029 PRK_like Phosphoribulo 99.9 6.9E-27 1.5E-31 246.2 4.7 167 519-688 1-201 (277)
16 TIGR00318 cyaB adenylyl cyclas 99.9 2.3E-25 5.1E-30 225.0 9.1 137 250-395 24-173 (174)
17 cd02028 UMPK_like Uridine mono 99.9 9.6E-26 2.1E-30 229.0 5.0 166 519-687 1-178 (179)
18 TIGR00554 panK_bact pantothena 99.9 7.6E-26 1.7E-30 244.5 3.1 180 514-694 59-283 (290)
19 cd02025 PanK Pantothenate kina 99.9 3.2E-25 6.9E-30 232.3 3.6 173 519-692 1-213 (220)
20 PTZ00301 uridine kinase; Provi 99.9 2.5E-24 5.5E-29 223.4 9.0 166 62-228 3-191 (210)
21 PRK15453 phosphoribulokinase; 99.9 8E-25 1.7E-29 232.4 5.0 172 515-687 3-206 (290)
22 PRK05480 uridine/cytidine kina 99.9 2.2E-24 4.8E-29 224.3 6.2 175 514-690 3-189 (209)
23 TIGR00554 panK_bact pantothena 99.9 1.2E-23 2.5E-28 227.5 6.9 202 28-229 9-281 (290)
24 PF00485 PRK: Phosphoribulokin 99.9 9.5E-24 2.1E-28 217.2 5.3 163 64-227 1-189 (194)
25 PRK07429 phosphoribulokinase; 99.9 2.9E-23 6.3E-28 228.7 9.2 208 513-739 4-222 (327)
26 cd02023 UMPK Uridine monophosp 99.9 1.3E-22 2.9E-27 209.0 4.9 172 519-692 1-184 (198)
27 TIGR00235 udk uridine kinase. 99.9 1.4E-22 3E-27 210.6 5.0 175 514-690 3-189 (207)
28 cd02026 PRK Phosphoribulokinas 99.9 3.4E-22 7.4E-27 215.7 7.7 204 519-741 1-215 (273)
29 COG1072 CoaA Panthothenate kin 99.9 1.3E-22 2.9E-27 212.3 3.9 187 8-194 4-236 (283)
30 PLN02348 phosphoribulokinase 99.9 5.3E-22 1.2E-26 219.8 8.0 180 45-226 32-244 (395)
31 PRK06696 uridine kinase; Valid 99.9 5.7E-22 1.2E-26 208.4 6.9 177 513-690 18-211 (223)
32 cd02029 PRK_like Phosphoribulo 99.8 2.8E-21 6E-26 203.9 7.3 161 64-225 1-201 (277)
33 cd02024 NRK1 Nicotinamide ribo 99.8 2.1E-21 4.6E-26 197.6 4.9 156 519-674 1-179 (187)
34 cd02028 UMPK_like Uridine mono 99.8 5.3E-21 1.2E-25 194.3 7.5 161 64-224 1-178 (179)
35 cd02025 PanK Pantothenate kina 99.8 3E-21 6.6E-26 202.3 5.5 165 64-228 1-212 (220)
36 PRK05480 uridine/cytidine kina 99.8 1.5E-20 3.3E-25 195.5 9.4 167 60-227 4-189 (209)
37 cd07890 CYTH-like_AC_IV-like A 99.8 9.9E-21 2.1E-25 190.6 6.7 133 252-393 24-169 (169)
38 PRK07667 uridine kinase; Provi 99.8 3.4E-20 7.4E-25 190.7 6.2 172 508-687 8-193 (193)
39 PRK15453 phosphoribulokinase; 99.8 8.8E-20 1.9E-24 194.1 8.4 164 60-224 3-206 (290)
40 COG1072 CoaA Panthothenate kin 99.8 1.7E-20 3.8E-25 196.4 2.0 194 455-656 8-238 (283)
41 PRK06696 uridine kinase; Valid 99.8 1.8E-19 3.9E-24 189.5 8.7 170 58-227 18-211 (223)
42 cd02023 UMPK Uridine monophosp 99.8 1.9E-19 4E-24 185.7 8.5 164 64-228 1-183 (198)
43 TIGR00235 udk uridine kinase. 99.8 4.7E-19 1E-23 184.2 8.2 168 59-227 3-189 (207)
44 PRK07429 phosphoribulokinase; 99.8 3.1E-19 6.8E-24 196.8 7.2 166 59-226 5-186 (327)
45 PRK07667 uridine kinase; Provi 99.8 4.3E-19 9.3E-24 182.6 7.1 165 56-224 11-193 (193)
46 PRK09270 nucleoside triphospha 99.8 3E-19 6.5E-24 188.6 5.4 182 506-690 22-222 (229)
47 cd02024 NRK1 Nicotinamide ribo 99.7 1.1E-18 2.5E-23 177.6 5.4 148 64-211 1-179 (187)
48 cd02026 PRK Phosphoribulokinas 99.7 1.3E-18 2.9E-23 187.8 6.1 161 64-226 1-177 (273)
49 PRK09270 nucleoside triphospha 99.7 3.5E-18 7.6E-23 180.4 7.9 182 44-226 15-221 (229)
50 PRK06547 hypothetical protein; 99.7 2.7E-17 5.8E-22 165.9 8.4 153 59-224 12-171 (172)
51 PF01121 CoaE: Dephospho-CoA k 99.7 1.3E-18 2.9E-23 176.4 -1.1 155 63-227 1-176 (180)
52 PRK06547 hypothetical protein; 99.7 1.7E-17 3.6E-22 167.5 6.6 153 514-687 12-171 (172)
53 KOG4203 Armadillo/beta-Catenin 99.7 2E-17 4.4E-22 189.8 4.2 176 514-690 41-237 (473)
54 PRK14733 coaE dephospho-CoA ki 99.6 4E-17 8.7E-22 168.5 2.0 158 60-227 4-182 (204)
55 cd02022 DPCK Dephospho-coenzym 99.6 2.5E-17 5.3E-22 167.5 0.2 154 64-227 1-175 (179)
56 PTZ00451 dephospho-CoA kinase; 99.6 3.8E-17 8.2E-22 173.0 1.3 160 62-226 1-189 (244)
57 KOG3220 Similar to bacterial d 99.6 7.7E-17 1.7E-21 160.9 2.1 159 62-228 1-180 (225)
58 PRK14730 coaE dephospho-CoA ki 99.6 4.6E-17 1E-21 167.7 -0.4 156 63-227 2-179 (195)
59 PRK00081 coaE dephospho-CoA ki 99.6 9.2E-17 2E-21 165.4 0.9 156 62-227 2-178 (194)
60 PLN02422 dephospho-CoA kinase 99.6 2.2E-16 4.7E-21 165.8 -0.6 158 62-227 1-179 (232)
61 PRK14734 coaE dephospho-CoA ki 99.6 5E-16 1.1E-20 160.7 -0.0 159 62-228 1-180 (200)
62 PRK14732 coaE dephospho-CoA ki 99.5 5E-16 1.1E-20 160.0 -0.6 154 64-227 1-175 (196)
63 COG0237 CoaE Dephospho-CoA kin 99.5 8.9E-16 1.9E-20 158.1 0.4 156 62-228 2-178 (201)
64 PRK14731 coaE dephospho-CoA ki 99.5 2.5E-15 5.5E-20 156.4 0.7 160 60-227 3-187 (208)
65 PF01928 CYTH: CYTH domain; I 99.5 2.1E-14 4.6E-19 146.3 4.2 138 251-395 27-184 (185)
66 KOG3308 Uncharacterized protei 99.5 2E-14 4.2E-19 143.8 3.0 158 516-678 3-174 (225)
67 TIGR00152 dephospho-CoA kinase 99.4 1.3E-14 2.7E-19 148.7 -0.2 156 64-227 1-177 (188)
68 KOG3308 Uncharacterized protei 99.4 7.2E-14 1.6E-18 139.8 4.1 165 61-229 3-190 (225)
69 PRK08233 hypothetical protein; 99.4 8.5E-14 1.8E-18 140.9 4.0 150 516-689 2-161 (182)
70 cd07758 ThTPase Thiamine Triph 99.4 1.7E-13 3.8E-18 141.1 6.3 123 252-385 25-181 (196)
71 cd07762 CYTH-like_Pase_1 Uncha 99.4 1.7E-13 3.7E-18 139.3 6.1 119 255-385 25-171 (180)
72 TIGR00318 cyaB adenylyl cyclas 99.4 7.4E-13 1.6E-17 134.1 10.2 129 730-862 33-172 (174)
73 PRK03333 coaE dephospho-CoA ki 99.4 3.3E-14 7.1E-19 161.5 -0.1 157 62-228 1-178 (395)
74 PRK08233 hypothetical protein; 99.4 3.5E-13 7.7E-18 136.4 6.6 142 62-226 3-161 (182)
75 KOG2702 Predicted panthothenat 99.4 1.8E-13 3.9E-18 138.9 4.3 154 36-194 98-284 (323)
76 PLN03046 D-glycerate 3-kinase; 99.4 7.8E-13 1.7E-17 147.3 7.2 169 44-212 185-429 (460)
77 cd02022 DPCK Dephospho-coenzym 99.3 6.4E-14 1.4E-18 142.4 -2.0 159 519-691 1-176 (179)
78 KOG2702 Predicted panthothenat 99.3 6.8E-13 1.5E-17 134.7 3.4 139 514-653 116-283 (323)
79 PF01121 CoaE: Dephospho-CoA k 99.3 1.2E-13 2.6E-18 140.4 -4.6 159 518-690 1-176 (180)
80 KOG4203 Armadillo/beta-Catenin 99.3 6E-12 1.3E-16 144.9 7.2 167 60-226 42-236 (473)
81 PRK14733 coaE dephospho-CoA ki 99.3 5.4E-13 1.2E-17 137.9 -1.5 162 514-690 3-182 (204)
82 PLN02796 D-glycerate 3-kinase 99.3 4.6E-12 1E-16 139.4 5.7 153 60-212 98-317 (347)
83 PRK14730 coaE dephospho-CoA ki 99.2 7.3E-13 1.6E-17 136.6 -1.9 160 518-691 2-180 (195)
84 PRK00081 coaE dephospho-CoA ki 99.2 1.2E-12 2.5E-17 135.0 -1.7 160 517-690 2-178 (194)
85 COG1102 Cmk Cytidylate kinase 99.2 7.8E-12 1.7E-16 121.6 1.3 150 63-228 1-157 (179)
86 PRK14734 coaE dephospho-CoA ki 99.2 3.4E-12 7.4E-17 132.1 -1.4 161 518-691 2-180 (200)
87 PRK14732 coaE dephospho-CoA ki 99.1 3.5E-12 7.6E-17 131.6 -2.3 159 519-691 1-176 (196)
88 PLN02422 dephospho-CoA kinase 99.1 5.1E-12 1.1E-16 132.9 -2.0 161 518-691 2-180 (232)
89 COG4240 Predicted kinase [Gene 99.1 1.2E-10 2.6E-15 118.6 7.5 106 57-162 45-175 (300)
90 PTZ00451 dephospho-CoA kinase; 99.1 7.4E-12 1.6E-16 132.9 -1.8 163 518-689 2-189 (244)
91 PRK14731 coaE dephospho-CoA ki 99.0 2.9E-11 6.2E-16 126.1 -1.1 134 515-652 3-157 (208)
92 PRK01184 hypothetical protein; 99.0 1E-10 2.2E-15 119.1 1.5 156 62-227 1-163 (184)
93 COG0237 CoaE Dephospho-CoA kin 99.0 4.1E-11 8.9E-16 123.6 -2.1 161 517-692 2-179 (201)
94 TIGR00152 dephospho-CoA kinase 99.0 3.5E-11 7.6E-16 123.2 -2.8 160 519-691 1-178 (188)
95 PRK06217 hypothetical protein; 98.9 7.8E-10 1.7E-14 112.9 5.6 103 62-191 1-106 (183)
96 PF13207 AAA_17: AAA domain; P 98.9 1.2E-10 2.5E-15 110.1 -0.5 115 519-657 1-118 (121)
97 COG1437 CyaB Adenylate cyclase 98.9 3.5E-09 7.6E-14 105.2 9.0 115 747-862 47-174 (178)
98 KOG3220 Similar to bacterial d 98.9 1.3E-10 2.8E-15 116.7 -1.5 165 517-693 1-182 (225)
99 cd02020 CMPK Cytidine monophos 98.9 2.2E-10 4.7E-15 111.6 -0.5 139 64-225 1-146 (147)
100 PRK06217 hypothetical protein; 98.9 1.3E-09 2.8E-14 111.3 3.5 105 519-653 3-108 (183)
101 PRK03333 coaE dephospho-CoA ki 98.9 3.2E-10 6.9E-15 129.1 -1.2 159 518-691 2-178 (395)
102 TIGR02173 cyt_kin_arch cytidyl 98.8 8.7E-10 1.9E-14 110.4 1.8 155 63-233 1-162 (171)
103 PF13207 AAA_17: AAA domain; P 98.8 1.5E-09 3.2E-14 102.5 2.9 104 64-190 1-111 (121)
104 PRK04182 cytidylate kinase; Pr 98.8 1.2E-09 2.7E-14 110.1 2.5 150 64-228 2-158 (180)
105 PRK08118 topology modulation p 98.8 3.1E-09 6.8E-14 107.0 4.1 99 63-191 2-101 (167)
106 COG0283 Cmk Cytidylate kinase 98.8 1.2E-09 2.7E-14 111.6 1.1 173 62-235 4-210 (222)
107 PRK13477 bifunctional pantoate 98.8 1.2E-09 2.7E-14 126.8 1.0 165 61-227 283-487 (512)
108 PRK06762 hypothetical protein; 98.8 1E-08 2.2E-13 102.6 7.5 134 62-226 2-147 (166)
109 TIGR00017 cmk cytidylate kinas 98.8 9.9E-10 2.1E-14 115.2 0.0 166 63-234 3-209 (217)
110 PRK13477 bifunctional pantoate 98.8 1.1E-09 2.4E-14 127.2 0.2 132 516-650 283-442 (512)
111 PRK07261 topology modulation p 98.7 6.3E-09 1.4E-13 105.2 4.1 99 64-192 2-102 (171)
112 COG1102 Cmk Cytidylate kinase 98.7 1.3E-09 2.9E-14 106.2 -0.8 116 519-655 2-117 (179)
113 cd02020 CMPK Cytidine monophos 98.7 8.7E-10 1.9E-14 107.4 -2.4 142 519-688 1-146 (147)
114 PRK08118 topology modulation p 98.7 4.8E-09 1E-13 105.6 1.9 104 519-657 3-107 (167)
115 PRK11860 bifunctional 3-phosph 98.7 6.5E-09 1.4E-13 126.1 3.2 190 44-238 423-649 (661)
116 cd07891 CYTH-like_CthTTM-like_ 98.7 1.9E-08 4.1E-13 99.2 5.6 85 273-371 32-121 (148)
117 PRK07261 topology modulation p 98.7 7.7E-09 1.7E-13 104.5 2.3 105 519-658 2-108 (171)
118 cd07756 CYTH-like_Pase_CHAD Un 98.7 3.2E-08 6.9E-13 102.2 6.5 125 255-386 31-188 (197)
119 PRK00023 cmk cytidylate kinase 98.7 4.3E-09 9.4E-14 111.0 -0.0 168 62-235 4-212 (225)
120 PRK05541 adenylylsulfate kinas 98.6 2E-08 4.4E-13 101.6 4.4 144 60-234 5-162 (176)
121 PRK08356 hypothetical protein; 98.6 1.8E-08 3.9E-13 103.9 3.1 151 62-226 5-176 (195)
122 cd07890 CYTH-like_AC_IV-like A 98.6 1.5E-07 3.3E-12 94.9 9.3 114 747-861 45-169 (169)
123 PRK13949 shikimate kinase; Pro 98.6 2.2E-08 4.7E-13 101.1 2.9 36 63-98 2-37 (169)
124 KOG2878 Predicted kinase [Gene 98.6 7.3E-08 1.6E-12 96.7 6.5 102 61-162 30-164 (282)
125 PRK00131 aroK shikimate kinase 98.6 2.2E-08 4.9E-13 100.3 2.8 41 60-100 2-42 (175)
126 cd07374 CYTH-like_Pase CYTH-li 98.6 1.2E-07 2.7E-12 95.9 7.6 102 254-369 29-158 (174)
127 PRK09518 bifunctional cytidyla 98.5 3.5E-08 7.7E-13 120.8 3.2 175 63-240 2-227 (712)
128 PLN02200 adenylate kinase fami 98.5 3E-08 6.5E-13 105.2 2.2 120 60-190 41-167 (234)
129 TIGR02173 cyt_kin_arch cytidyl 98.5 9.9E-09 2.1E-13 102.8 -2.2 113 519-651 2-114 (171)
130 PRK00625 shikimate kinase; Pro 98.5 4.5E-08 9.7E-13 99.1 2.0 142 64-226 2-150 (173)
131 PRK01184 hypothetical protein; 98.5 2.7E-08 5.8E-13 101.4 -0.0 118 518-651 2-126 (184)
132 PRK03839 putative kinase; Prov 98.5 7.3E-08 1.6E-12 97.9 3.0 97 64-190 2-101 (180)
133 cd07761 CYTH-like_CthTTM-like 98.5 2.6E-07 5.6E-12 90.9 6.3 80 275-370 32-118 (146)
134 PRK14737 gmk guanylate kinase; 98.4 2.3E-07 4.9E-12 95.1 5.4 161 60-226 2-169 (186)
135 PRK14729 miaA tRNA delta(2)-is 98.4 3.3E-09 7.1E-14 115.7 -9.1 172 62-254 4-179 (300)
136 PRK04182 cytidylate kinase; Pr 98.4 2.6E-08 5.6E-13 100.5 -2.1 112 519-650 2-113 (180)
137 COG0324 MiaA tRNA delta(2)-iso 98.4 2.9E-09 6.4E-14 115.6 -9.7 175 61-256 2-181 (308)
138 TIGR01359 UMP_CMP_kin_fam UMP- 98.4 2E-07 4.4E-12 94.6 4.2 117 64-191 1-126 (183)
139 PRK06762 hypothetical protein; 98.4 1.6E-07 3.5E-12 94.0 3.2 106 517-651 2-118 (166)
140 cd00464 SK Shikimate kinase (S 98.4 8.7E-08 1.9E-12 94.2 1.0 37 65-101 2-38 (154)
141 PRK05057 aroK shikimate kinase 98.4 4E-07 8.7E-12 92.1 5.3 37 62-98 4-40 (172)
142 COG3954 PrkB Phosphoribulokina 98.4 1.9E-07 4.2E-12 93.0 2.6 168 517-686 5-205 (289)
143 cd02019 NK Nucleoside/nucleoti 98.3 6.7E-07 1.5E-11 76.5 5.2 56 64-177 1-63 (69)
144 PRK00091 miaA tRNA delta(2)-is 98.3 5.8E-09 1.3E-13 114.6 -9.8 43 61-103 3-47 (307)
145 PF13671 AAA_33: AAA domain; P 98.3 1.5E-07 3.3E-12 91.2 0.8 109 64-193 1-122 (143)
146 TIGR01360 aden_kin_iso1 adenyl 98.3 4.9E-07 1.1E-11 91.9 3.9 118 62-191 3-129 (188)
147 PRK04040 adenylate kinase; Pro 98.3 2.6E-07 5.7E-12 94.9 1.5 37 62-98 2-40 (188)
148 PRK00023 cmk cytidylate kinase 98.3 6.4E-08 1.4E-12 102.2 -3.1 38 517-554 4-41 (225)
149 PRK14527 adenylate kinase; Pro 98.3 4.9E-07 1.1E-11 92.9 3.3 138 61-210 5-155 (191)
150 TIGR00017 cmk cytidylate kinas 98.3 9.9E-08 2.1E-12 100.1 -2.1 130 517-652 2-161 (217)
151 COG1936 Predicted nucleotide k 98.2 6E-07 1.3E-11 89.1 3.3 98 63-190 1-104 (180)
152 COG0703 AroK Shikimate kinase 98.2 6.4E-07 1.4E-11 89.6 3.5 134 63-229 3-155 (172)
153 cd01428 ADK Adenylate kinase ( 98.2 4.4E-07 9.6E-12 92.8 2.4 117 65-191 2-127 (194)
154 PRK13946 shikimate kinase; Pro 98.2 4.7E-07 1E-11 92.6 2.6 37 62-98 10-46 (184)
155 PRK14528 adenylate kinase; Pro 98.2 3.5E-07 7.5E-12 93.8 1.6 137 63-210 2-151 (186)
156 PRK10078 ribose 1,5-bisphospho 98.2 6.3E-07 1.4E-11 91.7 3.2 121 63-190 3-132 (186)
157 PRK04040 adenylate kinase; Pro 98.2 2.1E-07 4.5E-12 95.6 -0.4 38 517-554 2-41 (188)
158 COG0283 Cmk Cytidylate kinase 98.2 1.9E-07 4E-12 95.9 -0.8 133 517-651 4-160 (222)
159 cd02021 GntK Gluconate kinase 98.2 1E-06 2.3E-11 86.5 4.4 36 64-99 1-36 (150)
160 PRK08154 anaerobic benzoate ca 98.2 1.1E-06 2.4E-11 97.2 5.1 40 59-98 130-169 (309)
161 PRK03731 aroL shikimate kinase 98.2 3.3E-07 7.2E-12 92.2 0.8 36 64-99 4-39 (171)
162 cd02019 NK Nucleoside/nucleoti 98.2 1.2E-06 2.6E-11 74.9 4.1 26 612-637 34-63 (69)
163 PRK13947 shikimate kinase; Pro 98.2 1.1E-06 2.5E-11 88.1 4.1 37 64-100 3-39 (171)
164 PRK14530 adenylate kinase; Pro 98.2 1.3E-06 2.8E-11 91.5 4.3 117 64-190 5-127 (215)
165 TIGR00174 miaA tRNA isopenteny 98.2 1.8E-08 3.9E-13 109.5 -10.1 171 64-254 1-175 (287)
166 PRK03839 putative kinase; Prov 98.2 8.5E-07 1.8E-11 90.1 2.6 99 519-649 2-100 (180)
167 PRK13948 shikimate kinase; Pro 98.2 1.6E-06 3.4E-11 88.6 4.4 41 60-100 8-48 (182)
168 PRK12269 bifunctional cytidyla 98.1 5E-07 1.1E-11 111.1 0.2 86 152-239 191-280 (863)
169 PRK00131 aroK shikimate kinase 98.1 7.7E-07 1.7E-11 89.1 1.1 38 516-553 3-40 (175)
170 PRK08356 hypothetical protein; 98.1 9.1E-07 2E-11 91.3 1.6 38 516-554 4-41 (195)
171 PRK14531 adenylate kinase; Pro 98.1 2.1E-06 4.5E-11 87.7 4.1 116 63-190 3-129 (183)
172 PF13238 AAA_18: AAA domain; P 98.1 1.5E-07 3.3E-12 89.1 -4.1 109 65-193 1-116 (129)
173 PRK05541 adenylylsulfate kinas 98.1 1.3E-06 2.7E-11 88.5 2.2 40 514-553 4-48 (176)
174 PLN02840 tRNA dimethylallyltra 98.1 1.9E-07 4.2E-12 105.8 -4.3 108 59-167 18-128 (421)
175 TIGR01351 adk adenylate kinase 98.1 2.4E-06 5.1E-11 89.2 3.9 116 65-190 2-125 (210)
176 TIGR03263 guanyl_kin guanylate 98.1 2.8E-06 6E-11 86.1 4.2 29 63-91 2-30 (180)
177 TIGR02322 phosphon_PhnN phosph 98.1 4.3E-06 9.3E-11 84.7 5.3 24 64-87 3-26 (179)
178 PRK02496 adk adenylate kinase; 98.1 1.2E-06 2.5E-11 89.4 1.1 136 63-210 2-147 (184)
179 TIGR01359 UMP_CMP_kin_fam UMP- 98.1 1.3E-06 2.8E-11 88.7 1.3 117 519-651 1-126 (183)
180 PLN02200 adenylate kinase fami 98.1 9E-07 2E-11 94.0 0.1 120 515-650 41-167 (234)
181 PHA02530 pseT polynucleotide k 98.0 4.4E-06 9.5E-11 91.8 5.5 127 62-211 2-143 (300)
182 PRK14532 adenylate kinase; Pro 98.0 4.3E-06 9.4E-11 85.5 5.0 115 65-190 3-128 (188)
183 PLN02199 shikimate kinase 98.0 2.2E-06 4.9E-11 92.8 2.9 58 40-100 83-140 (303)
184 PF13238 AAA_18: AAA domain; P 98.0 3.9E-07 8.5E-12 86.3 -2.7 111 520-653 1-116 (129)
185 PRK03846 adenylylsulfate kinas 98.0 6.7E-06 1.5E-10 85.0 6.2 41 59-99 21-66 (198)
186 PRK00279 adk adenylate kinase; 98.0 4.1E-06 8.8E-11 87.8 4.4 116 64-190 2-128 (215)
187 TIGR00455 apsK adenylylsulfate 98.0 6.6E-06 1.4E-10 83.9 5.6 105 60-185 16-132 (184)
188 PF01583 APS_kinase: Adenylyls 98.0 3.6E-06 7.8E-11 83.5 3.0 104 61-185 1-116 (156)
189 PRK00889 adenylylsulfate kinas 97.9 7.5E-06 1.6E-10 82.8 4.1 40 61-100 3-47 (175)
190 cd00227 CPT Chloramphenicol (C 97.9 9.4E-06 2E-10 82.2 4.6 37 63-99 3-41 (175)
191 PRK00625 shikimate kinase; Pro 97.9 2.7E-06 5.8E-11 86.3 0.6 36 519-554 2-37 (173)
192 TIGR01313 therm_gnt_kin carboh 97.9 8.5E-06 1.8E-10 81.3 4.0 34 65-98 1-34 (163)
193 PRK13808 adenylate kinase; Pro 97.9 4.7E-06 1E-10 92.3 1.8 115 65-189 3-127 (333)
194 PLN02748 tRNA dimethylallyltra 97.9 3.6E-06 7.9E-11 97.1 0.5 107 60-167 20-129 (468)
195 TIGR01360 aden_kin_iso1 adenyl 97.9 4.4E-06 9.4E-11 84.9 1.0 117 517-650 3-128 (188)
196 PTZ00088 adenylate kinase 1; P 97.9 6.8E-06 1.5E-10 87.0 2.4 121 61-190 5-131 (229)
197 COG0529 CysC Adenylylsulfate k 97.9 1.5E-05 3.2E-10 79.5 4.6 48 58-105 19-71 (197)
198 PRK13949 shikimate kinase; Pro 97.8 3.7E-06 8E-11 84.9 0.1 35 519-553 3-37 (169)
199 PRK05537 bifunctional sulfate 97.8 2.2E-05 4.7E-10 93.6 6.1 54 48-101 377-437 (568)
200 TIGR03574 selen_PSTK L-seryl-t 97.8 1.3E-05 2.9E-10 85.8 3.9 133 64-227 1-152 (249)
201 PLN02165 adenylate isopentenyl 97.8 6.1E-06 1.3E-10 91.1 1.2 105 61-167 42-151 (334)
202 cd01428 ADK Adenylate kinase ( 97.8 5.2E-06 1.1E-10 84.9 0.5 117 520-651 2-127 (194)
203 PRK08154 anaerobic benzoate ca 97.8 5.2E-06 1.1E-10 91.9 0.5 40 514-553 130-169 (309)
204 PRK12338 hypothetical protein; 97.8 5.2E-06 1.1E-10 91.3 0.5 37 60-96 2-38 (319)
205 cd00464 SK Shikimate kinase (S 97.8 6.7E-06 1.5E-10 80.8 1.0 34 520-553 2-35 (154)
206 PRK11860 bifunctional 3-phosph 97.8 3.6E-06 7.8E-11 102.4 -1.3 122 517-649 442-594 (661)
207 PRK12338 hypothetical protein; 97.8 6.6E-06 1.4E-10 90.5 0.7 39 516-554 3-41 (319)
208 PRK14530 adenylate kinase; Pro 97.8 9.7E-06 2.1E-10 84.9 1.9 118 519-650 5-127 (215)
209 PRK14527 adenylate kinase; Pro 97.8 6E-06 1.3E-10 84.8 0.3 40 515-554 4-43 (191)
210 PRK09518 bifunctional cytidyla 97.8 3.1E-06 6.7E-11 103.9 -2.2 130 518-651 2-177 (712)
211 PRK14737 gmk guanylate kinase; 97.8 1.2E-05 2.6E-10 82.5 2.3 158 516-689 3-169 (186)
212 COG3954 PrkB Phosphoribulokina 97.7 4.2E-05 9.1E-10 76.7 5.7 160 61-221 4-203 (289)
213 KOG3347 Predicted nucleotide k 97.7 2.9E-05 6.4E-10 75.2 4.0 101 63-190 8-114 (176)
214 PRK00300 gmk guanylate kinase; 97.7 2.3E-05 5.1E-10 81.1 3.6 27 61-87 4-30 (205)
215 KOG3079 Uridylate kinase/adeny 97.7 2E-05 4.3E-10 79.1 2.7 125 60-193 6-137 (195)
216 cd02027 APSK Adenosine 5'-phos 97.7 1.9E-05 4.1E-10 78.0 2.5 37 64-100 1-42 (149)
217 TIGR01351 adk adenylate kinase 97.7 1E-05 2.3E-10 84.4 0.5 116 520-650 2-125 (210)
218 PRK14528 adenylate kinase; Pro 97.7 1.7E-05 3.7E-10 81.3 1.8 117 519-651 3-130 (186)
219 PLN02674 adenylate kinase 97.7 2.6E-05 5.7E-10 83.1 3.1 119 62-190 31-159 (244)
220 PRK03731 aroL shikimate kinase 97.6 1.5E-05 3.3E-10 80.1 1.0 36 519-554 4-39 (171)
221 PF01928 CYTH: CYTH domain; I 97.6 0.00011 2.3E-09 75.0 6.8 127 730-862 35-183 (185)
222 PRK14532 adenylate kinase; Pro 97.6 2.7E-05 5.8E-10 79.6 2.3 35 520-554 3-37 (188)
223 PRK14021 bifunctional shikimat 97.6 3.2E-05 6.8E-10 92.0 3.0 41 60-100 4-44 (542)
224 cd02030 NDUO42 NADH:Ubiquinone 97.6 1.8E-05 4E-10 83.2 0.9 31 64-94 1-31 (219)
225 COG1428 Deoxynucleoside kinase 97.6 7.6E-06 1.7E-10 84.0 -2.1 55 628-687 126-186 (216)
226 PRK00279 adk adenylate kinase; 97.6 2.7E-05 5.9E-10 81.6 1.5 36 519-554 2-37 (215)
227 PF07931 CPT: Chloramphenicol 97.6 3.9E-05 8.5E-10 77.7 2.6 151 63-240 2-172 (174)
228 COG0563 Adk Adenylate kinase a 97.5 2.8E-05 6.1E-10 79.2 1.4 116 64-190 2-128 (178)
229 PRK05416 glmZ(sRNA)-inactivati 97.5 0.00013 2.9E-09 79.7 6.5 31 60-91 4-34 (288)
230 TIGR00041 DTMP_kinase thymidyl 97.5 9.7E-05 2.1E-09 75.8 5.0 25 63-87 4-28 (195)
231 TIGR03263 guanyl_kin guanylate 97.5 3.9E-05 8.4E-10 77.7 1.9 26 518-543 2-27 (180)
232 PRK12339 2-phosphoglycerate ki 97.5 1.8E-05 3.8E-10 82.0 -0.8 36 61-96 2-38 (197)
233 KOG1384 tRNA delta(2)-isopente 97.5 3.1E-05 6.7E-10 84.0 1.0 42 61-102 6-49 (348)
234 COG4088 Predicted nucleotide k 97.5 4.6E-05 9.9E-10 77.6 1.6 138 62-224 1-155 (261)
235 COG0563 Adk Adenylate kinase a 97.5 4E-05 8.6E-10 78.1 1.1 35 520-554 3-37 (178)
236 PRK14526 adenylate kinase; Pro 97.4 5.7E-05 1.2E-09 79.1 2.1 116 65-190 3-123 (211)
237 KOG3354 Gluconate kinase [Carb 97.4 6.3E-05 1.4E-09 73.3 2.1 39 60-98 10-48 (191)
238 PRK02496 adk adenylate kinase; 97.4 5.6E-05 1.2E-09 77.0 1.8 36 519-554 3-38 (184)
239 COG3265 GntK Gluconate kinase 97.4 9.2E-05 2E-09 71.9 3.1 116 68-209 1-129 (161)
240 PF00406 ADK: Adenylate kinase 97.4 2.2E-05 4.7E-10 77.5 -1.2 112 67-188 1-122 (151)
241 PF13671 AAA_33: AAA domain; P 97.4 4.8E-05 1E-09 73.7 1.1 36 519-554 1-36 (143)
242 PLN02459 probable adenylate ki 97.4 0.00013 2.8E-09 78.3 4.4 119 63-190 30-154 (261)
243 PF08433 KTI12: Chromatin asso 97.4 0.00011 2.4E-09 79.8 3.5 108 62-192 1-122 (270)
244 PF01202 SKI: Shikimate kinase 97.4 2.9E-05 6.3E-10 77.4 -1.0 127 71-228 1-144 (158)
245 cd01673 dNK Deoxyribonucleosid 97.3 5.4E-05 1.2E-09 77.7 0.5 56 168-223 124-181 (193)
246 TIGR01313 therm_gnt_kin carboh 97.3 8.2E-05 1.8E-09 74.2 1.7 34 520-553 1-34 (163)
247 smart00072 GuKc Guanylate kina 97.3 0.0002 4.4E-09 73.1 4.6 157 63-227 3-168 (184)
248 cd02021 GntK Gluconate kinase 97.3 9.3E-05 2E-09 72.7 2.0 36 519-554 1-36 (150)
249 TIGR03575 selen_PSTK_euk L-ser 97.3 9.3E-05 2E-09 82.5 2.1 124 65-190 2-176 (340)
250 PF00625 Guanylate_kin: Guanyl 97.3 0.00016 3.5E-09 73.7 3.4 34 62-95 2-39 (183)
251 PRK13808 adenylate kinase; Pro 97.3 0.0001 2.2E-09 81.8 2.0 35 520-554 3-37 (333)
252 COG1703 ArgK Putative periplas 97.3 0.00057 1.2E-08 73.7 7.4 119 51-178 40-174 (323)
253 PRK13975 thymidylate kinase; P 97.3 0.00015 3.3E-09 74.4 3.0 26 63-88 3-28 (196)
254 PF03308 ArgK: ArgK protein; 97.3 0.00055 1.2E-08 72.8 6.9 120 50-179 17-153 (266)
255 PRK14529 adenylate kinase; Pro 97.3 0.00012 2.6E-09 77.1 2.0 116 64-190 2-127 (223)
256 COG2074 2-phosphoglycerate kin 97.3 0.00012 2.6E-09 76.7 1.9 40 58-97 85-125 (299)
257 PRK12339 2-phosphoglycerate ki 97.2 4.7E-05 1E-09 78.8 -1.2 39 516-554 2-40 (197)
258 KOG3079 Uridylate kinase/adeny 97.2 0.00011 2.3E-09 73.9 1.3 125 514-652 5-136 (195)
259 KOG3354 Gluconate kinase [Carb 97.2 0.00013 2.7E-09 71.2 1.6 45 515-559 10-54 (191)
260 PRK05506 bifunctional sulfate 97.2 0.00044 9.5E-09 84.1 6.3 43 59-101 457-504 (632)
261 PLN02842 nucleotide kinase 97.2 0.00015 3.3E-09 84.3 2.1 115 67-190 2-122 (505)
262 TIGR02322 phosphon_PhnN phosph 97.2 0.0002 4.4E-09 72.5 2.6 24 519-542 3-26 (179)
263 PRK13951 bifunctional shikimat 97.2 0.0003 6.5E-09 82.6 4.3 36 64-99 2-37 (488)
264 PRK11545 gntK gluconate kinase 97.2 0.00024 5.2E-09 71.3 2.9 30 68-97 1-30 (163)
265 TIGR01663 PNK-3'Pase polynucle 97.2 0.0003 6.5E-09 82.8 4.1 95 59-191 366-470 (526)
266 PRK00300 gmk guanylate kinase; 97.2 0.00024 5.3E-09 73.5 3.0 27 516-542 4-30 (205)
267 COG1936 Predicted nucleotide k 97.2 0.00015 3.2E-09 72.4 1.2 104 519-659 2-108 (180)
268 PLN02674 adenylate kinase 97.1 0.00029 6.4E-09 75.1 3.6 40 515-554 29-68 (244)
269 PF03668 ATP_bind_2: P-loop AT 97.1 0.00048 1.1E-08 74.4 5.2 139 62-229 1-142 (284)
270 PRK04220 2-phosphoglycerate ki 97.1 0.00021 4.4E-09 78.2 2.4 39 60-98 90-129 (301)
271 PRK04220 2-phosphoglycerate ki 97.1 0.00025 5.4E-09 77.6 2.9 39 514-552 89-128 (301)
272 PRK00091 miaA tRNA delta(2)-is 97.1 0.00027 5.8E-09 78.1 2.8 39 516-554 3-43 (307)
273 PTZ00088 adenylate kinase 1; P 97.1 0.00023 4.9E-09 75.5 2.0 122 515-650 4-131 (229)
274 PRK14531 adenylate kinase; Pro 97.1 0.0002 4.4E-09 73.1 1.6 37 519-555 4-40 (183)
275 PF13189 Cytidylate_kin2: Cyti 97.1 0.00012 2.7E-09 74.6 -0.2 135 64-201 1-146 (179)
276 PRK10078 ribose 1,5-bisphospho 97.1 0.00016 3.5E-09 74.0 0.6 33 519-551 4-36 (186)
277 PRK14738 gmk guanylate kinase; 97.1 0.00062 1.4E-08 71.0 4.9 27 59-85 10-36 (206)
278 COG0194 Gmk Guanylate kinase [ 97.0 0.0011 2.3E-08 67.3 5.7 27 61-87 3-29 (191)
279 PHA00729 NTP-binding motif con 97.0 0.0005 1.1E-08 72.3 3.4 106 60-189 15-139 (226)
280 cd02030 NDUO42 NADH:Ubiquinone 96.9 0.00031 6.8E-09 73.9 0.8 31 519-549 1-31 (219)
281 PF03308 ArgK: ArgK protein; 96.9 0.00078 1.7E-08 71.7 3.7 118 505-639 17-153 (266)
282 cd00227 CPT Chloramphenicol (C 96.9 0.00037 7.9E-09 70.6 1.1 37 518-554 3-41 (175)
283 COG1428 Deoxynucleoside kinase 96.8 0.00053 1.1E-08 70.7 2.1 59 168-226 126-188 (216)
284 PRK09435 membrane ATPase/prote 96.8 0.00097 2.1E-08 74.4 4.3 39 513-551 52-95 (332)
285 COG0645 Predicted kinase [Gene 96.8 0.0011 2.4E-08 66.1 4.0 111 63-191 2-126 (170)
286 PHA02530 pseT polynucleotide k 96.8 0.00061 1.3E-08 74.9 2.3 37 517-553 2-39 (300)
287 COG1703 ArgK Putative periplas 96.8 0.0012 2.6E-08 71.3 4.4 120 503-639 37-175 (323)
288 PLN02459 probable adenylate ki 96.8 0.0007 1.5E-08 72.8 2.6 121 516-650 28-154 (261)
289 PLN02840 tRNA dimethylallyltra 96.8 0.00066 1.4E-08 77.5 2.6 37 515-551 19-55 (421)
290 PRK09825 idnK D-gluconate kina 96.8 0.00076 1.7E-08 68.6 2.5 36 63-98 4-39 (176)
291 PRK13947 shikimate kinase; Pro 96.8 0.00059 1.3E-08 68.4 1.7 34 520-553 4-37 (171)
292 COG3265 GntK Gluconate kinase 96.7 0.0005 1.1E-08 66.9 0.9 42 524-565 2-43 (161)
293 PLN02165 adenylate isopentenyl 96.7 0.0007 1.5E-08 75.0 2.1 37 515-551 41-77 (334)
294 PRK13948 shikimate kinase; Pro 96.7 0.0008 1.7E-08 68.8 2.0 39 515-553 8-46 (182)
295 smart00072 GuKc Guanylate kina 96.7 0.0012 2.5E-08 67.6 3.0 121 518-648 3-133 (184)
296 PRK12269 bifunctional cytidyla 96.6 0.0007 1.5E-08 83.9 1.4 37 518-554 35-71 (863)
297 PF00448 SRP54: SRP54-type pro 96.6 0.001 2.3E-08 68.8 2.3 38 517-554 1-43 (196)
298 COG0194 Gmk Guanylate kinase [ 96.6 0.0017 3.8E-08 65.7 3.7 125 516-652 3-137 (191)
299 PRK09825 idnK D-gluconate kina 96.6 0.0011 2.4E-08 67.4 2.3 36 519-554 5-40 (176)
300 PRK13946 shikimate kinase; Pro 96.6 0.00095 2.1E-08 68.3 1.8 37 516-552 9-45 (184)
301 PLN02748 tRNA dimethylallyltra 96.6 0.0013 2.8E-08 76.4 2.8 40 515-554 20-61 (468)
302 PHA00729 NTP-binding motif con 96.5 0.0017 3.7E-08 68.3 3.4 27 516-542 16-42 (226)
303 PRK09435 membrane ATPase/prote 96.5 0.0021 4.5E-08 71.8 4.1 41 56-96 50-95 (332)
304 PF07931 CPT: Chloramphenicol 96.5 0.00089 1.9E-08 67.9 1.1 37 518-554 2-40 (174)
305 PRK14529 adenylate kinase; Pro 96.5 0.0011 2.4E-08 69.8 1.9 115 520-651 3-128 (223)
306 KOG0635 Adenosine 5'-phosphosu 96.5 0.0034 7.5E-08 61.0 4.9 44 60-103 29-77 (207)
307 PRK03846 adenylylsulfate kinas 96.5 0.0021 4.6E-08 66.4 3.8 40 513-552 20-64 (198)
308 PF06414 Zeta_toxin: Zeta toxi 96.5 0.0019 4.1E-08 66.8 3.4 42 59-100 12-56 (199)
309 PRK05057 aroK shikimate kinase 96.5 0.0013 2.9E-08 66.5 2.2 36 517-552 4-39 (172)
310 COG4639 Predicted kinase [Gene 96.5 0.0019 4.1E-08 63.5 3.1 101 62-189 2-117 (168)
311 PF06414 Zeta_toxin: Zeta toxi 96.5 0.0016 3.5E-08 67.3 2.8 41 513-553 11-54 (199)
312 TIGR00174 miaA tRNA isopenteny 96.5 0.0013 2.7E-08 72.0 1.8 36 519-554 1-38 (287)
313 PF00004 AAA: ATPase family as 96.4 0.0017 3.6E-08 61.5 2.3 32 65-96 1-32 (132)
314 PF01583 APS_kinase: Adenylyls 96.4 0.0015 3.2E-08 65.0 2.0 38 516-553 1-43 (156)
315 PRK00889 adenylylsulfate kinas 96.4 0.0019 4.2E-08 65.2 2.7 37 516-552 3-44 (175)
316 PF01745 IPT: Isopentenyl tran 96.4 0.0024 5.2E-08 66.1 3.2 40 62-101 1-42 (233)
317 PF00004 AAA: ATPase family as 96.4 0.0017 3.7E-08 61.5 2.0 34 520-553 1-34 (132)
318 PF13189 Cytidylate_kin2: Cyti 96.3 0.00031 6.7E-09 71.6 -3.7 132 519-653 1-138 (179)
319 COG0529 CysC Adenylylsulfate k 96.3 0.0034 7.3E-08 63.0 3.6 40 513-552 19-63 (197)
320 PF00448 SRP54: SRP54-type pro 96.2 0.0024 5.3E-08 66.1 2.3 37 62-98 1-42 (196)
321 PLN02842 nucleotide kinase 96.2 0.0012 2.6E-08 77.0 -0.1 33 522-554 2-34 (505)
322 PF00625 Guanylate_kin: Guanyl 96.2 0.0015 3.2E-08 66.7 0.6 122 518-649 3-134 (183)
323 PRK14490 putative bifunctional 96.1 0.0034 7.5E-08 71.3 3.2 28 515-542 3-30 (369)
324 PRK14526 adenylate kinase; Pro 96.1 0.0021 4.5E-08 67.3 1.3 35 520-554 3-37 (211)
325 PF00406 ADK: Adenylate kinase 96.1 0.0017 3.7E-08 63.9 0.2 112 522-648 1-122 (151)
326 cd03116 MobB Molybdenum is an 96.1 0.0033 7.2E-08 62.9 2.3 24 518-541 2-25 (159)
327 PRK11545 gntK gluconate kinase 96.0 0.0026 5.7E-08 63.8 1.5 31 523-553 1-31 (163)
328 PF02367 UPF0079: Uncharacteri 96.0 0.0077 1.7E-07 57.6 4.3 32 57-88 10-41 (123)
329 PF13521 AAA_28: AAA domain; P 96.0 0.0027 5.8E-08 63.4 1.2 31 65-98 2-32 (163)
330 TIGR03575 selen_PSTK_euk L-ser 96.0 0.0025 5.4E-08 71.3 1.1 35 520-554 2-42 (340)
331 PRK12337 2-phosphoglycerate ki 96.0 0.0037 8E-08 72.0 2.4 39 60-98 253-292 (475)
332 TIGR00455 apsK adenylylsulfate 96.0 0.0058 1.2E-07 62.3 3.6 40 513-552 14-58 (184)
333 COG4619 ABC-type uncharacteriz 96.0 0.0032 6.9E-08 62.7 1.6 23 519-541 31-53 (223)
334 PF08433 KTI12: Chromatin asso 96.0 0.0024 5.3E-08 69.3 0.8 150 519-718 3-169 (270)
335 PRK10751 molybdopterin-guanine 95.9 0.0035 7.6E-08 63.5 1.8 28 515-542 4-31 (173)
336 cd01672 TMPK Thymidine monopho 95.9 0.0041 8.9E-08 63.3 2.3 31 63-93 1-34 (200)
337 PF02367 UPF0079: Uncharacteri 95.9 0.0067 1.4E-07 58.0 3.4 29 515-543 13-41 (123)
338 TIGR00150 HI0065_YjeE ATPase, 95.9 0.0059 1.3E-07 59.2 3.0 29 515-543 20-48 (133)
339 KOG3347 Predicted nucleotide k 95.9 0.0044 9.5E-08 60.5 2.1 101 520-650 10-114 (176)
340 PRK05537 bifunctional sulfate 95.8 0.005 1.1E-07 73.7 2.9 62 487-551 365-432 (568)
341 COG3025 Uncharacterized conser 95.8 0.0069 1.5E-07 68.3 3.7 118 255-380 32-179 (432)
342 TIGR01425 SRP54_euk signal rec 95.8 0.005 1.1E-07 70.8 2.6 38 515-552 98-140 (429)
343 COG2954 Uncharacterized protei 95.8 0.017 3.8E-07 55.4 5.7 93 283-381 39-133 (156)
344 COG1660 Predicted P-loop-conta 95.8 0.013 2.9E-07 62.1 5.4 59 171-229 85-143 (286)
345 TIGR00150 HI0065_YjeE ATPase, 95.8 0.0078 1.7E-07 58.4 3.3 29 60-88 20-48 (133)
346 COG0324 MiaA tRNA delta(2)-iso 95.7 0.0053 1.2E-07 67.4 2.3 39 516-554 2-42 (308)
347 cd02027 APSK Adenosine 5'-phos 95.7 0.0039 8.6E-08 61.5 1.2 34 519-552 1-39 (149)
348 TIGR03499 FlhF flagellar biosy 95.7 0.0063 1.4E-07 66.6 2.8 38 516-553 193-237 (282)
349 PRK12337 2-phosphoglycerate ki 95.7 0.0062 1.4E-07 70.2 2.8 39 515-553 253-292 (475)
350 cd00820 PEPCK_HprK Phosphoenol 95.7 0.0077 1.7E-07 56.1 2.9 32 63-96 16-47 (107)
351 smart00763 AAA_PrkA PrkA AAA d 95.7 0.0072 1.6E-07 67.8 3.1 28 60-87 76-103 (361)
352 smart00382 AAA ATPases associa 95.7 0.0066 1.4E-07 56.8 2.4 25 518-542 3-27 (148)
353 smart00763 AAA_PrkA PrkA AAA d 95.7 0.0068 1.5E-07 68.0 2.8 28 515-542 76-103 (361)
354 PLN02772 guanylate kinase 95.6 0.011 2.4E-07 66.9 4.5 26 61-86 134-159 (398)
355 COG0703 AroK Shikimate kinase 95.6 0.0042 9.1E-08 62.6 1.0 35 520-554 5-39 (172)
356 TIGR00750 lao LAO/AO transport 95.6 0.0081 1.8E-07 66.4 3.4 40 513-552 30-74 (300)
357 COG0378 HypB Ni2+-binding GTPa 95.6 0.0067 1.4E-07 61.9 2.4 42 513-554 8-54 (202)
358 PRK10751 molybdopterin-guanine 95.6 0.0054 1.2E-07 62.2 1.8 28 60-87 4-31 (173)
359 PRK14738 gmk guanylate kinase; 95.6 0.0056 1.2E-07 63.8 2.0 28 513-540 9-36 (206)
360 COG1618 Predicted nucleotide k 95.6 0.006 1.3E-07 60.4 1.9 27 61-87 4-30 (179)
361 TIGR00101 ureG urease accessor 95.6 0.0079 1.7E-07 62.4 2.9 36 517-552 1-40 (199)
362 TIGR03499 FlhF flagellar biosy 95.5 0.0087 1.9E-07 65.6 3.1 37 61-97 193-236 (282)
363 COG1126 GlnQ ABC-type polar am 95.5 0.0065 1.4E-07 63.0 1.9 23 518-540 29-51 (240)
364 PF13521 AAA_28: AAA domain; P 95.5 0.0048 1E-07 61.5 0.9 32 520-554 2-33 (163)
365 PRK14729 miaA tRNA delta(2)-is 95.5 0.0071 1.5E-07 66.5 2.2 37 517-554 4-42 (300)
366 cd01672 TMPK Thymidine monopho 95.5 0.007 1.5E-07 61.6 2.0 24 518-541 1-24 (200)
367 PLN02199 shikimate kinase 95.4 0.0095 2.1E-07 65.1 2.9 37 518-554 103-139 (303)
368 TIGR00064 ftsY signal recognit 95.4 0.0092 2E-07 65.0 2.8 39 515-553 70-113 (272)
369 TIGR00064 ftsY signal recognit 95.4 0.0095 2.1E-07 64.9 2.9 39 60-98 70-113 (272)
370 smart00382 AAA ATPases associa 95.4 0.007 1.5E-07 56.7 1.6 25 63-87 3-27 (148)
371 PRK10416 signal recognition pa 95.4 0.0093 2E-07 66.4 2.8 38 515-552 112-154 (318)
372 PHA02575 1 deoxynucleoside mon 95.4 0.0079 1.7E-07 63.1 2.1 32 63-95 1-33 (227)
373 TIGR01663 PNK-3'Pase polynucle 95.4 0.0085 1.8E-07 70.8 2.6 38 514-551 366-403 (526)
374 cd00071 GMPK Guanosine monopho 95.4 0.0066 1.4E-07 59.1 1.4 24 64-87 1-24 (137)
375 COG4639 Predicted kinase [Gene 95.4 0.008 1.7E-07 59.2 1.9 36 517-554 2-37 (168)
376 cd00820 PEPCK_HprK Phosphoenol 95.4 0.011 2.4E-07 55.1 2.7 33 517-551 15-47 (107)
377 TIGR00750 lao LAO/AO transport 95.4 0.011 2.3E-07 65.4 3.1 41 57-97 29-74 (300)
378 COG2074 2-phosphoglycerate kin 95.4 0.012 2.6E-07 62.1 3.3 39 513-551 85-124 (299)
379 COG1124 DppF ABC-type dipeptid 95.3 0.0078 1.7E-07 63.4 1.8 24 518-541 34-57 (252)
380 TIGR03574 selen_PSTK L-seryl-t 95.3 0.006 1.3E-07 65.4 1.0 33 519-551 1-38 (249)
381 COG4619 ABC-type uncharacteriz 95.3 0.0082 1.8E-07 59.9 1.7 22 64-85 31-52 (223)
382 PRK00698 tmk thymidylate kinas 95.3 0.0087 1.9E-07 61.6 1.9 26 62-87 3-28 (205)
383 cd00071 GMPK Guanosine monopho 95.3 0.0072 1.6E-07 58.9 1.2 24 519-542 1-24 (137)
384 COG0378 HypB Ni2+-binding GTPa 95.3 0.016 3.5E-07 59.2 3.7 37 62-98 13-53 (202)
385 COG1124 DppF ABC-type dipeptid 95.3 0.0089 1.9E-07 63.0 1.9 32 63-94 34-69 (252)
386 PLN00020 ribulose bisphosphate 95.2 0.011 2.3E-07 66.3 2.5 36 514-549 145-180 (413)
387 PRK06761 hypothetical protein; 95.2 0.01 2.2E-07 64.7 2.4 34 63-96 4-37 (282)
388 KOG3877 NADH:ubiquinone oxidor 95.2 0.01 2.2E-07 63.1 2.2 39 60-98 69-110 (393)
389 PRK11889 flhF flagellar biosyn 95.2 0.011 2.4E-07 66.9 2.6 38 515-552 239-281 (436)
390 COG1126 GlnQ ABC-type polar am 95.2 0.0097 2.1E-07 61.7 1.9 32 63-94 29-64 (240)
391 PF03029 ATP_bind_1: Conserved 95.2 0.007 1.5E-07 64.6 1.0 28 522-549 1-33 (238)
392 PRK14974 cell division protein 95.2 0.011 2.5E-07 66.1 2.6 38 514-551 137-179 (336)
393 COG1136 SalX ABC-type antimicr 95.2 0.0093 2E-07 62.8 1.8 24 518-541 32-55 (226)
394 PRK13951 bifunctional shikimat 95.2 0.0088 1.9E-07 70.4 1.7 35 519-553 2-36 (488)
395 PRK06761 hypothetical protein; 95.2 0.01 2.3E-07 64.7 2.2 33 518-550 4-36 (282)
396 KOG3062 RNA polymerase II elon 95.2 0.038 8.2E-07 57.5 6.0 108 62-191 1-124 (281)
397 PRK08099 bifunctional DNA-bind 95.1 0.01 2.3E-07 68.0 2.2 32 60-91 217-248 (399)
398 TIGR01425 SRP54_euk signal rec 95.1 0.012 2.7E-07 67.6 2.7 38 60-97 98-140 (429)
399 PF03668 ATP_bind_2: P-loop AT 95.1 0.017 3.6E-07 62.7 3.5 56 631-689 84-139 (284)
400 COG1136 SalX ABC-type antimicr 95.1 0.01 2.2E-07 62.5 1.8 24 63-86 32-55 (226)
401 PRK10416 signal recognition pa 95.1 0.014 3E-07 65.1 2.8 38 60-97 112-154 (318)
402 cd03115 SRP The signal recogni 95.1 0.013 2.9E-07 58.9 2.6 34 64-97 2-40 (173)
403 PRK00698 tmk thymidylate kinas 95.1 0.01 2.2E-07 61.1 1.7 26 517-542 3-28 (205)
404 COG2019 AdkA Archaeal adenylat 95.1 0.014 2.9E-07 58.2 2.4 36 61-96 3-39 (189)
405 PRK05800 cobU adenosylcobinami 95.1 0.01 2.2E-07 60.1 1.5 26 63-88 2-27 (170)
406 PRK13975 thymidylate kinase; P 95.0 0.011 2.3E-07 60.7 1.7 26 518-543 3-28 (196)
407 PRK10646 ADP-binding protein; 95.0 0.023 4.9E-07 56.4 3.8 29 515-543 26-54 (153)
408 COG1618 Predicted nucleotide k 95.0 0.012 2.5E-07 58.4 1.7 39 516-554 4-42 (179)
409 PRK10867 signal recognition pa 95.0 0.015 3.2E-07 67.2 2.9 38 515-552 98-141 (433)
410 PF03029 ATP_bind_1: Conserved 95.0 0.01 2.2E-07 63.4 1.4 30 67-96 1-35 (238)
411 PRK14974 cell division protein 95.0 0.014 3.1E-07 65.3 2.7 38 60-97 138-180 (336)
412 cd03115 SRP The signal recogni 95.0 0.013 2.9E-07 58.9 2.2 34 519-552 2-40 (173)
413 PF13555 AAA_29: P-loop contai 95.0 0.011 2.4E-07 49.5 1.3 23 519-541 25-47 (62)
414 COG4088 Predicted nucleotide k 95.0 0.011 2.4E-07 60.7 1.6 24 519-542 3-26 (261)
415 PRK14495 putative molybdopteri 95.0 0.014 3.1E-07 66.7 2.6 24 518-541 2-25 (452)
416 PRK10646 ADP-binding protein; 94.9 0.026 5.7E-07 56.0 4.1 29 60-88 26-54 (153)
417 TIGR00101 ureG urease accessor 94.9 0.018 3.9E-07 59.8 3.0 35 62-96 1-39 (199)
418 cd01673 dNK Deoxyribonucleosid 94.9 0.0092 2E-07 61.1 0.8 48 628-677 124-171 (193)
419 cd00009 AAA The AAA+ (ATPases 94.9 0.02 4.4E-07 54.1 3.1 25 517-541 19-43 (151)
420 TIGR00959 ffh signal recogniti 94.9 0.018 3.8E-07 66.6 3.1 38 515-552 97-140 (428)
421 PF03205 MobB: Molybdopterin g 94.9 0.013 2.8E-07 57.4 1.7 23 519-541 2-24 (140)
422 COG1134 TagH ABC-type polysacc 94.8 0.033 7.1E-07 58.9 4.7 32 64-95 55-90 (249)
423 PF13555 AAA_29: P-loop contai 94.8 0.015 3.2E-07 48.8 1.6 23 64-86 25-47 (62)
424 PRK12726 flagellar biosynthesi 94.8 0.018 4E-07 65.0 2.9 39 515-553 204-247 (407)
425 TIGR00041 DTMP_kinase thymidyl 94.8 0.012 2.6E-07 60.3 1.3 26 517-542 3-28 (195)
426 PRK12724 flagellar biosynthesi 94.8 0.017 3.7E-07 66.1 2.6 37 516-552 222-264 (432)
427 COG1116 TauB ABC-type nitrate/ 94.8 0.02 4.4E-07 60.7 2.9 24 518-541 30-53 (248)
428 PF01745 IPT: Isopentenyl tran 94.8 0.018 4E-07 59.7 2.5 35 518-552 2-36 (233)
429 PRK12723 flagellar biosynthesi 94.7 0.019 4.2E-07 65.5 2.9 39 515-553 172-219 (388)
430 PRK05800 cobU adenosylcobinami 94.7 0.014 3.1E-07 59.0 1.6 25 519-543 3-27 (170)
431 PRK08099 bifunctional DNA-bind 94.7 0.015 3.3E-07 66.7 2.0 32 514-545 216-247 (399)
432 PRK00771 signal recognition pa 94.7 0.018 3.9E-07 66.7 2.6 37 515-551 93-134 (437)
433 PF03205 MobB: Molybdopterin g 94.7 0.017 3.7E-07 56.5 2.1 33 63-95 1-39 (140)
434 PRK11889 flhF flagellar biosyn 94.7 0.018 3.9E-07 65.3 2.4 37 61-97 240-281 (436)
435 COG3840 ThiQ ABC-type thiamine 94.7 0.022 4.8E-07 57.6 2.8 101 62-162 25-160 (231)
436 COG0645 Predicted kinase [Gene 94.7 0.02 4.3E-07 57.3 2.4 37 518-554 2-38 (170)
437 PF01202 SKI: Shikimate kinase 94.6 0.0096 2.1E-07 59.3 0.0 29 526-554 1-29 (158)
438 PRK12724 flagellar biosynthesi 94.6 0.02 4.4E-07 65.5 2.5 38 61-98 222-265 (432)
439 PRK08903 DnaA regulatory inact 94.5 0.028 6.1E-07 59.2 3.5 60 37-96 13-81 (227)
440 COG1117 PstB ABC-type phosphat 94.5 0.016 3.4E-07 60.1 1.4 26 514-539 30-55 (253)
441 KOG0744 AAA+-type ATPase [Post 94.5 0.027 6E-07 61.4 3.3 35 62-98 177-211 (423)
442 PF00005 ABC_tran: ABC transpo 94.5 0.017 3.7E-07 55.4 1.5 25 518-542 12-36 (137)
443 cd01131 PilT Pilus retraction 94.5 0.017 3.7E-07 59.8 1.5 23 519-541 3-25 (198)
444 cd03116 MobB Molybdenum is an 94.4 0.018 4E-07 57.6 1.6 25 62-86 1-25 (159)
445 PRK14495 putative molybdopteri 94.4 0.022 4.8E-07 65.2 2.5 25 62-86 1-25 (452)
446 PF07728 AAA_5: AAA domain (dy 94.4 0.02 4.3E-07 55.3 1.8 26 65-90 2-27 (139)
447 PF03215 Rad17: Rad17 cell cyc 94.4 0.03 6.5E-07 66.3 3.6 33 515-547 43-75 (519)
448 PRK08903 DnaA regulatory inact 94.4 0.04 8.7E-07 58.0 4.3 47 505-551 30-81 (227)
449 TIGR01166 cbiO cobalt transpor 94.4 0.02 4.3E-07 58.6 1.9 24 518-541 19-42 (190)
450 TIGR00960 3a0501s02 Type II (G 94.4 0.02 4.4E-07 59.8 1.9 24 518-541 30-53 (216)
451 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.4 0.02 4.4E-07 59.8 1.8 24 518-541 31-54 (218)
452 PF03215 Rad17: Rad17 cell cyc 94.4 0.033 7.1E-07 65.9 3.7 33 60-92 43-75 (519)
453 TIGR00390 hslU ATP-dependent p 94.3 0.025 5.5E-07 64.6 2.6 34 62-95 47-80 (441)
454 COG1116 TauB ABC-type nitrate/ 94.3 0.021 4.5E-07 60.6 1.8 24 63-86 30-53 (248)
455 cd03225 ABC_cobalt_CbiO_domain 94.3 0.021 4.6E-07 59.3 1.9 25 517-541 27-51 (211)
456 COG0802 Predicted ATPase or ki 94.3 0.049 1.1E-06 53.5 4.2 30 58-87 21-50 (149)
457 COG0802 Predicted ATPase or ki 94.3 0.044 9.5E-07 53.9 3.8 30 513-542 21-50 (149)
458 PRK14493 putative bifunctional 94.3 0.026 5.7E-07 61.5 2.5 34 62-95 1-38 (274)
459 PF13173 AAA_14: AAA domain 94.3 0.026 5.6E-07 54.1 2.2 36 518-553 3-42 (128)
460 COG1763 MobB Molybdopterin-gua 94.3 0.019 4.2E-07 57.4 1.3 25 517-541 2-26 (161)
461 cd03292 ABC_FtsE_transporter F 94.3 0.022 4.8E-07 59.3 1.8 25 517-541 27-51 (214)
462 PRK13768 GTPase; Provisional 94.2 0.027 5.7E-07 60.8 2.5 35 62-96 2-41 (253)
463 KOG1970 Checkpoint RAD17-RFC c 94.2 0.033 7.2E-07 64.6 3.3 32 61-92 109-140 (634)
464 cd00009 AAA The AAA+ (ATPases 94.2 0.028 6E-07 53.2 2.4 25 62-86 19-43 (151)
465 TIGR02673 FtsE cell division A 94.2 0.023 4.9E-07 59.3 1.8 24 518-541 29-52 (214)
466 PF06309 Torsin: Torsin; Inte 94.2 0.041 9E-07 52.7 3.4 40 502-541 36-77 (127)
467 PRK09087 hypothetical protein; 94.2 0.021 4.6E-07 60.5 1.6 34 519-552 46-79 (226)
468 COG4618 ArpD ABC-type protease 94.2 0.03 6.5E-07 64.5 2.9 33 64-96 364-400 (580)
469 PRK10867 signal recognition pa 94.2 0.03 6.6E-07 64.7 3.0 39 60-98 98-142 (433)
470 PRK12723 flagellar biosynthesi 94.2 0.032 7E-07 63.7 3.1 37 61-97 173-218 (388)
471 COG3840 ThiQ ABC-type thiamine 94.2 0.031 6.7E-07 56.6 2.5 35 517-551 25-63 (231)
472 COG3172 NadR Predicted ATPase/ 94.2 0.022 4.8E-07 56.3 1.5 28 62-89 8-35 (187)
473 COG1763 MobB Molybdopterin-gua 94.2 0.023 5E-07 56.9 1.7 25 62-86 2-26 (161)
474 cd03235 ABC_Metallic_Cations A 94.2 0.024 5.1E-07 59.1 1.9 25 517-541 25-49 (213)
475 COG1419 FlhF Flagellar GTP-bin 94.2 0.036 7.8E-07 62.7 3.4 70 28-97 166-245 (407)
476 PRK05201 hslU ATP-dependent pr 94.2 0.023 4.9E-07 65.0 1.8 34 62-95 50-83 (443)
477 cd01131 PilT Pilus retraction 94.2 0.023 5E-07 58.8 1.7 23 64-86 3-25 (198)
478 PF05496 RuvB_N: Holliday junc 94.2 0.04 8.7E-07 57.9 3.5 52 40-91 22-79 (233)
479 cd03269 ABC_putative_ATPase Th 94.1 0.024 5.2E-07 58.9 1.8 25 517-541 26-50 (210)
480 cd03224 ABC_TM1139_LivF_branch 94.1 0.024 5.2E-07 59.3 1.9 25 517-541 26-50 (222)
481 PF00005 ABC_tran: ABC transpo 94.1 0.022 4.8E-07 54.6 1.4 24 63-86 12-35 (137)
482 cd03238 ABC_UvrA The excision 94.1 0.024 5.3E-07 57.7 1.8 23 516-538 20-42 (176)
483 cd03256 ABC_PhnC_transporter A 94.1 0.024 5.3E-07 60.1 1.8 24 518-541 28-51 (241)
484 cd03222 ABC_RNaseL_inhibitor T 94.1 0.023 4.9E-07 57.9 1.5 24 518-541 26-49 (177)
485 cd03259 ABC_Carb_Solutes_like 94.1 0.025 5.4E-07 59.0 1.9 25 517-541 26-50 (213)
486 cd03293 ABC_NrtD_SsuB_transpor 94.1 0.025 5.4E-07 59.3 1.8 24 518-541 31-54 (220)
487 TIGR00960 3a0501s02 Type II (G 94.1 0.025 5.4E-07 59.1 1.8 24 63-86 30-53 (216)
488 cd03261 ABC_Org_Solvent_Resist 94.1 0.025 5.4E-07 59.9 1.9 24 518-541 27-50 (235)
489 cd03229 ABC_Class3 This class 94.1 0.025 5.5E-07 57.3 1.8 25 517-541 26-50 (178)
490 COG0541 Ffh Signal recognition 94.1 0.031 6.8E-07 63.4 2.7 40 514-553 97-141 (451)
491 cd03226 ABC_cobalt_CbiO_domain 94.1 0.025 5.5E-07 58.6 1.8 24 518-541 27-50 (205)
492 COG1120 FepC ABC-type cobalami 94.1 0.031 6.7E-07 60.1 2.5 34 517-550 28-63 (258)
493 PHA02544 44 clamp loader, smal 94.1 0.048 1E-06 60.4 4.1 40 504-543 30-69 (316)
494 TIGR01166 cbiO cobalt transpor 94.1 0.025 5.5E-07 57.8 1.8 24 63-86 19-42 (190)
495 PLN00020 ribulose bisphosphate 94.1 0.032 6.9E-07 62.6 2.7 36 60-95 146-181 (413)
496 PF13173 AAA_14: AAA domain 94.1 0.031 6.6E-07 53.5 2.3 34 63-96 3-40 (128)
497 PF07728 AAA_5: AAA domain (dy 94.1 0.023 5.1E-07 54.8 1.5 25 520-544 2-26 (139)
498 PRK12726 flagellar biosynthesi 94.0 0.034 7.3E-07 62.9 2.8 38 61-98 205-247 (407)
499 COG1855 ATPase (PilT family) [ 94.0 0.041 8.8E-07 62.4 3.4 22 65-86 266-287 (604)
500 cd03264 ABC_drug_resistance_li 94.0 0.024 5.1E-07 59.0 1.5 23 519-541 27-49 (211)
No 1
>PLN02318 phosphoribulokinase/uridine kinase
Probab=100.00 E-value=3.1e-76 Score=669.47 Aligned_cols=375 Identities=32% Similarity=0.621 Sum_probs=351.7
Q ss_pred cCceeeeeCCCccccCccchhhHHHHHHHHhcCCCcEEEeecCCCCCCcchhHhhhccce-eeeEEeecccccccccccC
Q 002962 482 RDTVKLVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQVKDF 560 (862)
Q Consensus 482 ~~~~~~~~~~~~~~~~e~~~~~~~~i~~~~~~~~~p~iIgI~G~sGSGKTTla~~L~~~l-~~~vislDdfy~~~~~~~~ 560 (862)
+++++++|+|++++|++||++++++++.+..+.+++++|||+|||||||||||+.|+..+ ++.+|++|+|+.......+
T Consensus 30 ~~~~~i~~~~~~~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~~~~~i~~ 109 (656)
T PLN02318 30 SDRYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDG 109 (656)
T ss_pred CCceEEEeCCCccccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceecchhhhCc
Confidence 579999999999999999999999999999888889999999999999999999999988 4779999999876444567
Q ss_pred ccCCCcccchhhhcccchhhcCCccccceeeecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccc
Q 002962 561 KYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVH 640 (862)
Q Consensus 561 n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d 640 (862)
+|++|.++|++.+.++|..|++|+.+.+|.||+.+++|.+.... ...+.+|||+||+|++++.+++++|++|||+++.+
T Consensus 110 nfD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i-~v~p~~VVIVEGIyaL~~~Lr~LlDlkIFVDtdvD 188 (656)
T PLN02318 110 NFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTL-EVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVH 188 (656)
T ss_pred cCCChhhcchhHHHHHHHHHhCCCceecCccccccCcccCCcee-ecCCCcEEEEechhhccHhHHhhCCEEEEEcCCcc
Confidence 89999999999999999999999999999999999988753222 34678999999999999999999999999999999
Q ss_pred hheeheeecccccccccccc--cceehhhhhhhhhcccccccccccccccCCCCcCCCCcceEEEecCcccchhhhhhhc
Q 002962 641 SHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKIL 718 (862)
Q Consensus 641 ~rl~Rri~Rd~~~rg~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~rl~qe~~~~~~k~~~~~~~~~~~~~m 718 (862)
.++.||+.||..++|++.+. .++...++|+|.+||+|++++||++|.|+|+|+-..+++.+++++.+.+.++++...+
T Consensus 189 irL~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Ilk~~~~~~~~~i~~~L 268 (656)
T PLN02318 189 FDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSSRSVTVEQIKAVL 268 (656)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEecCCccccHHHHHHHh
Confidence 99999999999999998875 6788899999999999999999999999999999999999999999999999999999
Q ss_pred CccccchhhhhhhheeeecCCCCCCCccCCCCeEEEEEecceeeEEeeccccCCCeeeccccceeeehhhhhhhhhccce
Q 002962 719 DPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQ 798 (862)
Q Consensus 719 ~~~~v~~fv~~y~~~Yl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~f~~~~~~~~~l~~lg~~ 798 (862)
.. .....+++|+|+||.+|+.+. ++|++|||||+|+|||+|||+|||+||||||+||++|||+|+++||||+|||+
T Consensus 269 ~~-~~~~~~~~~~DiYl~~P~~d~---~~~~e~LRvR~~~Gk~~Ltyke~i~dgp~ii~pk~~fEv~v~~~~gL~aLGy~ 344 (656)
T PLN02318 269 SE-DHTETTEETYDIYLLPPGEDP---ETCQSYLRMRNRDGKYSLMFEEWVTDEPFIISPRITFEVSVRLLGGLMALGYT 344 (656)
T ss_pred hh-ccccccceeeEEEecCCCCCc---hhccceEEEEecCCEEEEEEecccccCCeecCcceeEEEeeehHhHHHHcCCc
Confidence 86 477888999999999998753 57899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeeeeeecCeEEEEeeccCCCCCCceEEeccCHHHHhhccceeeecCcccceehhcc
Q 002962 799 AVAYIEASAFIYQDGKILIEVDHLQDAPSPYLQIKGVDKEAVAAAGSTLKLDGSYTTKVMSLA 861 (862)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (862)
++|++||++++|++|+|+|++||||+|+++|+||+|.+|+.|.++|++|||+|+|||+||||+
T Consensus 345 ~~a~vkk~r~iy~~g~v~i~lD~ve~Lg~~FvqIeg~~r~~V~~~a~kLGl~g~~i~~SYlE~ 407 (656)
T PLN02318 345 IATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQGKDRLVVKDVAEQLGLEGSYIPRTYIEQ 407 (656)
T ss_pred eEEEEEEEEEEEecCCEEEEeehhhccCCeeEEEehhHHHHHHHHHHHcCCCCCcccccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999996
No 2
>PLN02318 phosphoribulokinase/uridine kinase
Probab=100.00 E-value=3.9e-58 Score=521.84 Aligned_cols=365 Identities=32% Similarity=0.627 Sum_probs=321.2
Q ss_pred ccccccccceeEEeccceehhhHHHHHHHHhcCCeEEEeecCCCCCCcchHHHHhhhce-eeEEEeeccccccc----CC
Q 002962 28 SPSILQSLPVHASFDHGYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVGV----DE 102 (862)
Q Consensus 28 ~~~~~~~~~~~~s~~~~y~~l~~~i~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~L-g~~vI~~D~~~~~~----~~ 102 (862)
..-.+.+.++.+|||++|+..+++++.+.++++++++|||+|++||||||+|+.|+..+ ++.+|++|+|+... ..
T Consensus 31 ~~~~i~~~~~~~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~~~~~i~~n 110 (656)
T PLN02318 31 DRYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDGN 110 (656)
T ss_pred CceEEEeCCCccccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceecchhhhCcc
Confidence 34457788999999999999999999999988899999999999999999999999987 46899999996421 23
Q ss_pred CCCCCccchHHHHHhhhhhhcCCCccccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeee
Q 002962 103 GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFS 182 (862)
Q Consensus 103 ~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~ 182 (862)
.+.|.++|...+.+.|..++.|+.+.+|.||+..+.+........++.++||+||++++++.+++++|++|||+++.+.+
T Consensus 111 fD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~~Lr~LlDlkIFVDtdvDir 190 (656)
T PLN02318 111 FDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFD 190 (656)
T ss_pred CCChhhcchhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhccHhHHhhCCEEEEEcCCccHH
Confidence 45788899999999999999999999999999998877655556677899999999999999999999999999999999
Q ss_pred eeeeeecccCCc-cchhhHH----hhhhhhhhcccCCCcccceeecCCccc--hhhHhhhhhhccccCCCCccccccccC
Q 002962 183 LISKVQYDIGDS-CSLDSLI----DSIFPLFRKHIEPDLHHAQIRINNRFV--SSFREAIYKLKCRSEAPGACSISAFQG 255 (862)
Q Consensus 183 l~R~i~RD~~~~-~~~e~~~----~~~~p~~~k~Iep~~~~ADiII~N~~~--~~~~~~~y~lk~~~~~l~g~~~~~~~~ 255 (862)
+.||+.||...+ .+.+..+ ..+.|+|.+||+|++++||+||+|+|+ .++++|+|+|++...+..++....+..
T Consensus 191 L~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Ilk~~~~~~~~~i~~~L~~ 270 (656)
T PLN02318 191 LVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSSRSVTVEQIKAVLSE 270 (656)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEecCCccccHHHHHHHhhh
Confidence 999999998776 3555544 456999999999999999999999887 699999999999887666554443332
Q ss_pred -----CcccccceeeeeccCCCchhhhhcccceeeeecceeEEEeeCceeeeccceeeccccceeeeceeccchhccccE
Q 002962 256 -----NEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYS 330 (862)
Q Consensus 256 -----~~~e~d~Y~~~~~r~~~~~~~al~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v~~~~~L~~LGy~ 330 (862)
...-+|+||..|+++|.. +++|||||++++++.|||| +|+.+++|||.++.+|||+|.+.++|++|||+
T Consensus 271 ~~~~~~~~~~DiYl~~P~~d~~~-----~~e~LRvR~~~Gk~~Ltyk-e~i~dgp~ii~pk~~fEv~v~~~~gL~aLGy~ 344 (656)
T PLN02318 271 DHTETTEETYDIYLLPPGEDPET-----CQSYLRMRNRDGKYSLMFE-EWVTDEPFIISPRITFEVSVRLLGGLMALGYT 344 (656)
T ss_pred ccccccceeeEEEecCCCCCchh-----ccceEEEEecCCEEEEEEe-cccccCCeecCcceeEEEeeehHhHHHHcCCc
Confidence 223457777777777654 4667799999999999999 99999999999999999999999999999999
Q ss_pred EEEEEeeceeeEeeCeeEEeeehhccccceEEEEEcCCccchhhhhhhccccCCcchHHHHHHH-HHhc
Q 002962 331 VVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNRKTVGAEALRMGINGPWITKSYLEMV-LEKK 398 (862)
Q Consensus 331 ~~~~~~K~R~~~~~~~~~v~lD~v~~lG~~FvEiE~~~~~~v~~~~~~Lgl~~~~~~~sYlel~-l~~~ 398 (862)
++++++|.|++|.+|+++|++|+|+|||.+|+|||+.+++.|.++|++||++++++++||+||+ +|+.
T Consensus 345 ~~a~vkk~r~iy~~g~v~i~lD~ve~Lg~~FvqIeg~~r~~V~~~a~kLGl~g~~i~~SYlE~i~~~~~ 413 (656)
T PLN02318 345 IATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQGKDRLVVKDVAEQLGLEGSYIPRTYIEQIQLEKL 413 (656)
T ss_pred eEEEEEEEEEEEecCCEEEEeehhhccCCeeEEEehhHHHHHHHHHHHcCCCCCcccccHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999 4554
No 3
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=100.00 E-value=2.6e-34 Score=283.06 Aligned_cols=223 Identities=22% Similarity=0.336 Sum_probs=170.5
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccce--------eeeEEeeccccccccc----ccC--------ccCCCcccchhhhc
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIV--------GCEVVSLESYFKSEQV----KDF--------KYDDFSSLDLSLLS 574 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l--------~~~vislDdfy~~~~~----~~~--------n~~~p~t~D~~lL~ 574 (862)
+-|++||++||+||||||++-+|-..+ .+..+|.||||++++. .+. ..+.+|+||+.++.
T Consensus 29 ~~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~npnN~Llq~RGlaGtHD~kll~ 108 (282)
T KOG2878|consen 29 DVPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKNPNNALLQYRGLAGTHDLKLLV 108 (282)
T ss_pred cCcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceeeechhHHHHHhhCCCChhhccCCCCCcccHHHHH
Confidence 459999999999999999999887654 3678999999999652 111 14678999999999
Q ss_pred ccchhhcCC----ccccceeeeccc----ccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheehe
Q 002962 575 KNISDIRNG----RRTKVPIFDLET----GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISR 646 (862)
Q Consensus 575 ~~L~~L~~g----~~v~~P~yd~~~----~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rr 646 (862)
++|+.+.++ ..+.+|.||++. |||.+.+.|...+|.+++|+|||++++..+. +|..-.++.
T Consensus 109 evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl~--~~~v~a~d~--------- 177 (282)
T KOG2878|consen 109 EVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPLP--ADVVKAVDP--------- 177 (282)
T ss_pred HHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccccc--hhheeccCc---------
Confidence 999888654 469999999995 7999888898888999999999999884432 111000000
Q ss_pred eecccccccccccccceehhhhhhhhhcccccccccccccccCCCCcCCCCcceEEEecCcccchhhhhhhcCccccchh
Q 002962 647 VQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSS 726 (862)
Q Consensus 647 i~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~rl~qe~~~~~~k~~~~~~~~~~~~~m~~~~v~~f 726 (862)
++-|+...+.. +....+.+.++|...-...---|+++|.|||||||+++ +++.+|||||||.+|
T Consensus 178 l~Gdl~~VN~k------L~~Y~d~~~k~Idslvv~~~q~inyVYrWRLQqEhal~----------~~~~kGMsDEeV~~F 241 (282)
T KOG2878|consen 178 LQGDLEVVNKK------LEAYYDAWDKYIDSLVVIKIQDINYVYRWRLQQEHALR----------QDGQKGMSDEEVNDF 241 (282)
T ss_pred ccccHHHHhhH------HHHHHHHHHHhhhhEEEEEecCccHhhhhhHHHHHHHH----------HhhccCCCHHHHHHH
Confidence 01122222222 33455666777765433223345789999999999986 456689999999999
Q ss_pred hhhhhhee-eecCCCCCCCccCCCCeEEEEEecceeeEE
Q 002962 727 AQNFIDMY-LRLPGIPTNGQLTESDCIRVRICEGRFALL 764 (862)
Q Consensus 727 v~~y~~~Y-l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 764 (862)
|+||||+| +|++.+.+.+++..-.||.+-++++||.+.
T Consensus 242 V~rYmP~Yk~YL~tl~~~~~lgs~~~L~i~iDenRyp~~ 280 (282)
T KOG2878|consen 242 VSRYMPAYKAYLPTLYAEGPLGSDRVLAIDIDENRYPIL 280 (282)
T ss_pred HHhhhhHHHhhhhhhhhcCCCCCCeEEEEeecCCccccc
Confidence 99999999 999999999988888999999999998763
No 4
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.98 E-value=8.1e-34 Score=290.21 Aligned_cols=174 Identities=33% Similarity=0.537 Sum_probs=158.5
Q ss_pred CCcEEEeecCCCCCCcchhHhhhcccee---eeEEeecccccccc------cccCccCCCcccchhhhcccchhhcCCcc
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNGRR 585 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~---~~vislDdfy~~~~------~~~~n~~~p~t~D~~lL~~~L~~L~~g~~ 585 (862)
.++++|||+|+|||||||+|+.|.+.|+ +.+|++||||+... ....||++|.++|+++|.++|..|++|++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 4569999999999999999999999998 45999999999733 34568999999999999999999999999
Q ss_pred ccceeeecccccccCceeeeecccceeEEEcceeccc-Hhhhhccceeeeeecccchheeheeecccccccccccc--cc
Q 002962 586 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--ND 662 (862)
Q Consensus 586 v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~--~~ 662 (862)
+.+|.||+.+|.|.. ......|.+|||+||+|+++ ..+++++|++|||+++.|.|+.||+.||+.+||++++. .|
T Consensus 86 v~~P~yd~~~~~r~~--~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~q 163 (218)
T COG0572 86 VDLPVYDYKTHTREP--ETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQ 163 (218)
T ss_pred ccccccchhcccccC--CccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999985 33345788999999999998 58999999999999999999999999999999999986 78
Q ss_pred eehhhhhhhhhcccccccccccccccCC
Q 002962 663 IMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (862)
Q Consensus 663 ~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (862)
|.+.++|+|++||+|+++.||++|+...
T Consensus 164 y~~~vkp~~~~fIeptk~~ADiiip~~~ 191 (218)
T COG0572 164 YVKTVRPMYEQFIEPTKKYADIIIPSGG 191 (218)
T ss_pred HHHhhChhhhhccCcccccceEEeecCC
Confidence 9989999999999999999999987543
No 5
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.96 E-value=7.1e-31 Score=289.47 Aligned_cols=231 Identities=15% Similarity=0.216 Sum_probs=161.7
Q ss_pred hhHHHHHHHHhcC-----CCcEEEeecCCCCCCcchhHhhhcccee-----eeEEeeccccccccc-cc---Cc------
Q 002962 502 LSVQAIQALLENK-----GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQV-KD---FK------ 561 (862)
Q Consensus 502 ~~~~~i~~~~~~~-----~~p~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy~~~~~-~~---~n------ 561 (862)
||.+.+..+.... .+|+||||+|++|||||||++.|...+. +.+|++||||++.+. .. .+
T Consensus 192 w~~~~i~~h~~~~~~~~~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~nP~n~LL 271 (460)
T PLN03046 192 WCEDQIAEHRSKFKDGDDIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRERNPGNALL 271 (460)
T ss_pred HHHHHHHHHHHHhcCCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhhCccchhh
Confidence 5555666665432 3799999999999999999999987662 778999999997331 11 11
Q ss_pred --cCCCcccchhhhcccchhh----cCCccccceeeeccc----ccccCceeee-ecccceeEEEcceecccHhh-hhcc
Q 002962 562 --YDDFSSLDLSLLSKNISDI----RNGRRTKVPIFDLET----GARSGFKELE-VSEDCGVIIFEGVYALHPEI-RKSL 629 (862)
Q Consensus 562 --~~~p~t~D~~lL~~~L~~L----~~g~~v~~P~yd~~~----~~r~~~~~~~-~~~~~~vVIvEG~~~~~~~l-~~~~ 629 (862)
.+.|++||++++.++|..+ ++|+.+.+|+|||+. |||.+.+.|. +..|.+||||||||+++..+ .+.+
T Consensus 272 ~~RG~PGTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l 351 (460)
T PLN03046 272 ELRGNAGSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVV 351 (460)
T ss_pred cccCCCccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHh
Confidence 2568999999999999888 578999999999998 5677655554 44778999999999987322 2222
Q ss_pred ceeeeeecccchheeheeecccccccccccccceehhhhhhhhhcccccccccccccccCCCCcCCCCcceEEEecCccc
Q 002962 630 DLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQV 709 (862)
Q Consensus 630 D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~rl~qe~~~~~~k~~~~~ 709 (862)
+.. +. +....+..+.. |...+...++.+|.-. | -.++++|.||+|||+.|+...+.
T Consensus 352 ~~~-----D~----------~l~~VN~~L~~--Y~~~w~~~~D~li~L~---a-~d~~~Vy~WRlqQE~kLr~~gg~--- 407 (460)
T PLN03046 352 KAV-----DP----------QLEVVNKNLEA--YYDAWDKFIDAWVVIK---I-QDPSCVYQWRLQAEIAMRADGKP--- 407 (460)
T ss_pred hcc-----Ch----------hHHHHHHHHHH--HHHHHHHhhceeEEee---C-CChhHHHHHHHHHHHHHHHcCCC---
Confidence 211 11 11112222221 1111111122222111 1 12367899999999999865443
Q ss_pred chhhhhhhcCccccchhhhhhhhee-eecCCCCCCCcc--CCCCeEEEEEecceeeE
Q 002962 710 AYQDILKILDPAKFCSSAQNFIDMY-LRLPGIPTNGQL--TESDCIRVRICEGRFAL 763 (862)
Q Consensus 710 ~~~~~~~~m~~~~v~~fv~~y~~~Y-l~~~~l~~~~~~--~~~~~~~~~~~~~~~~~ 763 (862)
|||++||++||++|||+| +|+|++..++++ ..+.+|+|.++..|--+
T Consensus 408 -------GMsdeqV~~FV~~YmPaY~~y~~~L~~~~~~~~~~~~~L~i~Id~~R~~~ 457 (460)
T PLN03046 408 -------GMSDEEVMDFVSRYLPAYKAYLPTLYAEGPSGSDPDHVLVIDIDEERNPI 457 (460)
T ss_pred -------CCCHHHHHHHHHHhhhHHHHHHHHHhccCCcccCCCceEEEEECCCCCcc
Confidence 999999999999999999 999999887764 34578999999988643
No 6
>PTZ00301 uridine kinase; Provisional
Probab=99.96 E-value=8.3e-30 Score=264.25 Aligned_cols=172 Identities=27% Similarity=0.452 Sum_probs=151.0
Q ss_pred cEEEeecCCCCCCcchhHhhhccce----e---eeEEeecccccccc------cccCccCCCcccchhhhcccchhhcCC
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIV----G---CEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNG 583 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l----~---~~vislDdfy~~~~------~~~~n~~~p~t~D~~lL~~~L~~L~~g 583 (862)
.++|||+|||||||||||+.|++.+ + +.++++|+||++.. .+..+|++|.++|+++|.+.|..|++|
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 5899999999999999999887655 2 55899999998742 234689999999999999999999999
Q ss_pred ccccceeeecccccccCceeeeecccceeEEEcceecc-cHhhhhccceeeeeecccchheeheeecccccccccccc--
Q 002962 584 RRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-- 660 (862)
Q Consensus 584 ~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~-~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~-- 660 (862)
+.+.+|.||+..+++... ... ..|.+|||+||+|++ .+.+++++|++|||+++.++++.||+.||..++|++.+.
T Consensus 83 ~~i~~P~yd~~~~~~~~~-~~~-i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~ 160 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSDT-AVT-MTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVI 160 (210)
T ss_pred CcccCCCcccccCCcCCc-eEE-eCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHH
Confidence 999999999999988752 333 356799999999998 489999999999999999999999999999999998875
Q ss_pred cceehhhhhhhhhcccccccccccccccCC
Q 002962 661 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (862)
Q Consensus 661 ~~~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (862)
.+|...+.|++.+||+|.+.+||+||.+.-
T Consensus 161 ~~~~~~v~~~~~~~I~p~k~~ADiIi~~~~ 190 (210)
T PTZ00301 161 EQYEATVRPMYYAYVEPSKVYADIIVPSWK 190 (210)
T ss_pred HHHHHhhcccHHHHcCccccCCcEEEcCCC
Confidence 567777999999999999999999997544
No 7
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=99.96 E-value=3.3e-29 Score=246.21 Aligned_cols=141 Identities=23% Similarity=0.394 Sum_probs=130.9
Q ss_pred cccccccCCcccccceeeeeccCCCchhhhhcccceeee-ecceeEEEeeCceeeeccceeeccccceeeec----eecc
Q 002962 248 CSISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMR-QSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLG 322 (862)
Q Consensus 248 ~~~~~~~~~~~e~d~Y~~~~~r~~~~~~~al~~~~lRiR-~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~~ 322 (862)
+.++.+.+.+.|+|+||++|||+|+.+|+|+ ||| ..++++.+|||||+++... |+|.|+|+.| .+..
T Consensus 22 ~~~~~~~~~e~q~DiYf~~p~rdf~~tdeal-----RiR~~~~~~~~lTYKgp~ld~~~---k~r~E~E~~v~D~~~~~~ 93 (178)
T COG1437 22 SLGAKFIKEEEQEDIYFDHPCRDFADTDEAL-----RIRRINGGEVFLTYKGPKLDRES---KTREEIEIEVSDVEKALE 93 (178)
T ss_pred hccccccceeeeeeeeeecCCcchhcCccee-----EEEEecCCcEEEEEecccccccc---cceeeEEEEeCCHHHHHH
Confidence 4567888999999999999999999999999 999 6688999999999999888 9999999999 8999
Q ss_pred chhccccEEEEEEeeceeeEeeCeeEEeeehhccccceEEEEEcC--Cc-------cchhhhhhhccccCC-cchHHHHH
Q 002962 323 GLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--NR-------KTVGAEALRMGINGP-WITKSYLE 392 (862)
Q Consensus 323 ~L~~LGy~~~~~~~K~R~~~~~~~~~v~lD~v~~lG~~FvEiE~~--~~-------~~v~~~~~~Lgl~~~-~~~~sYle 392 (862)
+|++|||.+++.++|.|++|..++++|+||.|+|||. |+|||.+ ++ +.+.+++++||+..+ .+++||+|
T Consensus 94 il~~LGF~~~~~VkK~R~iY~~~~~~i~lD~VegLG~-F~EIE~~~~d~~e~~~~~~~~~~i~~~lGl~~~~~~r~sYlE 172 (178)
T COG1437 94 ILKRLGFKEVAVVKKTREIYKVGNVTIELDAVEGLGD-FLEIEVMVDDENEIDGAKEEIEEIARQLGLKEEDLERRSYLE 172 (178)
T ss_pred HHHHcCCceeeEEEEEEEEEeeCCEEEEEecccCCcc-cEEEEEecCCchhhHHHHHHHHHHHHHhCCChhcccchhHHH
Confidence 9999999999999999999999999999999999999 9999999 22 458999999999854 49999999
Q ss_pred HHHHh
Q 002962 393 MVLEK 397 (862)
Q Consensus 393 l~l~~ 397 (862)
|+..+
T Consensus 173 Ll~~~ 177 (178)
T COG1437 173 LLLEK 177 (178)
T ss_pred HHhcc
Confidence 99864
No 8
>PLN02796 D-glycerate 3-kinase
Probab=99.96 E-value=4.3e-30 Score=280.40 Aligned_cols=230 Identities=17% Similarity=0.250 Sum_probs=162.1
Q ss_pred hhHHHHHHHHh-----cCCCcEEEeecCCCCCCcchhHhhhcccee-----eeEEeeccccccccc-ccCc---------
Q 002962 502 LSVQAIQALLE-----NKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQV-KDFK--------- 561 (862)
Q Consensus 502 ~~~~~i~~~~~-----~~~~p~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy~~~~~-~~~n--------- 561 (862)
++.+.+..+.. ....|++|||+|++||||||+++.|...+. +..|++||||.+... ...+
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~Ll 159 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNALL 159 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHhhCcchhhh
Confidence 44555555542 124789999999999999999999998874 678999999987432 1111
Q ss_pred --cCCCcccchhhhcccchhhc----CCccccceeeeccc----ccccCceeeee-cccceeEEEcceecccHhh-hhcc
Q 002962 562 --YDDFSSLDLSLLSKNISDIR----NGRRTKVPIFDLET----GARSGFKELEV-SEDCGVIIFEGVYALHPEI-RKSL 629 (862)
Q Consensus 562 --~~~p~t~D~~lL~~~L~~L~----~g~~v~~P~yd~~~----~~r~~~~~~~~-~~~~~vVIvEG~~~~~~~l-~~~~ 629 (862)
.+.|++||++++.++|..|+ .|+.+.+|+|||+. |||.+.+.|.. ..|.+||||||||+++..+ .+.+
T Consensus 160 ~~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~l 239 (347)
T PLN02796 160 ELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDAV 239 (347)
T ss_pred hcCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHHh
Confidence 24689999999999999998 68899999999998 56776555543 3678999999999997332 1222
Q ss_pred ceeeeeecccchheeheeecccccccccccccceehhhhhhhhhcccccccccccccccCCCCcCCCCcceEEEecCccc
Q 002962 630 DLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQV 709 (862)
Q Consensus 630 D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~rl~qe~~~~~~k~~~~~ 709 (862)
+.. +.+ ....|..+.. |...++..++.+|.-. | --++++|.||++||+.|++.++.
T Consensus 240 ~~~-----~~~----------l~~vN~~L~~--y~~~w~~~~d~~i~L~---a-~~~~~v~~WR~qQE~~l~~~~~~--- 295 (347)
T PLN02796 240 KAV-----DPQ----------LEVVNKNLEA--YYDAWDKLVDSWIVIK---V-DDPSWVYEWRLQAEIAMRAKGKP--- 295 (347)
T ss_pred hcc-----Chh----------HHHHHHHHHH--HHHHHHHhhceEEEEe---C-CCchHHHHHHHHHHHHHHHhCCC---
Confidence 210 111 1122332322 1111122233332211 1 12467899999999999866665
Q ss_pred chhhhhhhcCccccchhhhhhhhee-eecCCCCCCCcc--CCCCeEEEEEecceee
Q 002962 710 AYQDILKILDPAKFCSSAQNFIDMY-LRLPGIPTNGQL--TESDCIRVRICEGRFA 762 (862)
Q Consensus 710 ~~~~~~~~m~~~~v~~fv~~y~~~Y-l~~~~l~~~~~~--~~~~~~~~~~~~~~~~ 762 (862)
|||++||++||++|||+| +|+|++...++. ..+..|+|.++..|--
T Consensus 296 -------gMsde~v~~FV~~~mP~y~~y~~~l~~~~~~~~~~~~~L~i~id~~R~~ 344 (347)
T PLN02796 296 -------GMSDEEVADFVSRYMPAYKAYLPGLYAEGPGGSDPDNVLVIEIDENRNP 344 (347)
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCceEEEECCCCCc
Confidence 999999999999999999 999999877664 3367899999998854
No 9
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.95 E-value=3.4e-29 Score=257.51 Aligned_cols=171 Identities=31% Similarity=0.551 Sum_probs=143.8
Q ss_pred EEeecCCCCCCcchhHhhhcccee---------eeEEeecccccccc--------cccCccCCCcccchhhhcccchhhc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVG---------CEVVSLESYFKSEQ--------VKDFKYDDFSSLDLSLLSKNISDIR 581 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~---------~~vislDdfy~~~~--------~~~~n~~~p~t~D~~lL~~~L~~L~ 581 (862)
||||+|||||||||||+.|+..|+ ..++++|+||.+.. ...++|++|.++|+++|.+.|..|+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 799999999999999999999885 45888999997622 1346789999999999999999999
Q ss_pred CCccccceeeecccccccCceeeeecccceeEEEcceeccc-Hhhhhccceeeeeecccchheeheeecccccccccccc
Q 002962 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 660 (862)
Q Consensus 582 ~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~ 660 (862)
+|+.+..|.||+.++++.++ .....+.+|||+||+|+++ +.+++++|++||++++.++++.||+.||..++|++.+.
T Consensus 81 ~g~~i~~p~yd~~~~~~~~~--~~~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~ 158 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDPW--IIIISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEE 158 (194)
T ss_dssp TTSCEEEEEEETTTTEEEEE--EEEEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHH
T ss_pred CCCcccccccccccccceee--eeecCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCccee
Confidence 99999999999999998862 2334568999999999987 67999999999999999999999999999999999876
Q ss_pred -cceehhhhhhhhhcccccccccccccccCCC
Q 002962 661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (862)
Q Consensus 661 -~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (862)
.+.+..++|.|..||+|.+.+||+||++.-.
T Consensus 159 ~~~~~~~~~~~~~~~I~p~~~~ADivi~~~~~ 190 (194)
T PF00485_consen 159 VIAQYERVRPGYERYIEPQKERADIVIPSGPT 190 (194)
T ss_dssp HHHHHHTHHHHHHHCTGGGGGG-SEEEESCTS
T ss_pred EEEEeecCChhhhhheeccccccEEEECCCCC
Confidence 2333489999999999999999999987543
No 10
>PLN02348 phosphoribulokinase
Probab=99.94 E-value=1.1e-27 Score=264.69 Aligned_cols=232 Identities=21% Similarity=0.324 Sum_probs=179.6
Q ss_pred HHHHhcCCCcEEEeecCCCCCCcchhHhhhcccee--------------------eeEEeeccccccccc----ccCccC
Q 002962 508 QALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG--------------------CEVVSLESYFKSEQV----KDFKYD 563 (862)
Q Consensus 508 ~~~~~~~~~p~iIgI~G~sGSGKTTla~~L~~~l~--------------------~~vislDdfy~~~~~----~~~n~~ 563 (862)
.....+.++|++|||+|+|||||||||+.|++.|+ +.+|++||||+.... ...+..
T Consensus 40 ~~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~l 119 (395)
T PLN02348 40 VVALAADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTAL 119 (395)
T ss_pred HHhhccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccC
Confidence 33444567899999999999999999999999885 368999999975221 123456
Q ss_pred CCcccchhhhcccchhhcCCccccceeeecccccccCceeeeecccceeEEEcceeccc-Hhhhhccceeeeeecccchh
Q 002962 564 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSH 642 (862)
Q Consensus 564 ~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~r 642 (862)
+|.++|+++|.+.|..|++|+.+..|.||+.++...+.. ...+.+||||||+|+++ +.+++++|++|||+++.+++
T Consensus 120 dP~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e---~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvr 196 (395)
T PLN02348 120 DPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPE---LIEPPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVK 196 (395)
T ss_pred CcccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCcE---EcCCCcEEEEechhhccCccccccCcEEEEEECCHHHH
Confidence 799999999999999999999999999999999866432 34578999999999987 57999999999999999999
Q ss_pred eeheeecccccccccccc-cceehhhhhhhhhcccccccccccccccCCCCcCC---CCcceEEEecCcccchhhhhhhc
Q 002962 643 LISRVQRDKSRMGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLS---PESSLFVLKSNKQVAYQDILKIL 718 (862)
Q Consensus 643 l~Rri~Rd~~~rg~~~~~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~rl~---qe~~~~~~k~~~~~~~~~~~~~m 718 (862)
+.|+++||+.++|.+.+. .+.+..+.|.+.+||+|.+..||+||+- +...+. .|...++.+- .|
T Consensus 197 l~RRI~RD~~eRG~S~EeV~~~i~ar~pd~~~yI~pqk~~ADiVI~v-~p~~l~~~~~~~~~l~vrl-----------i~ 264 (395)
T PLN02348 197 FAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADVVIEV-LPTQLIPDDNEGKVLRVRL-----------IM 264 (395)
T ss_pred HHHHHHhhHhhcCCCHHHHHHHHHhcCcchhhhcccccccCCEEEEe-cCCcCCCCCCCCceEEEEE-----------Ee
Confidence 999999999999988775 3445568899999999999999999854 334342 2223332221 11
Q ss_pred CccccchhhhhhhheeeecCCCC-----CCCccCCC-CeEEEEEecc
Q 002962 719 DPAKFCSSAQNFIDMYLRLPGIP-----TNGQLTES-DCIRVRICEG 759 (862)
Q Consensus 719 ~~~~v~~fv~~y~~~Yl~~~~l~-----~~~~~~~~-~~~~~~~~~~ 759 (862)
++-+..|-|.||+.+|-. -...++|+ ..|++...-.
T Consensus 265 -----~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d 306 (395)
T PLN02348 265 -----KEGVKNFDPVYLFDEGSTISWIPCGRKLTCSYPGIKFFYGPD 306 (395)
T ss_pred -----cCCCCCCCcceeeccCCccccccccccccCCCCCeEEEeecc
Confidence 344677889999998752 12235554 5777776543
No 11
>COG4240 Predicted kinase [General function prediction only]
Probab=99.94 E-value=1.1e-28 Score=248.08 Aligned_cols=223 Identities=19% Similarity=0.288 Sum_probs=153.3
Q ss_pred cCCCcEEEeecCCCCCCcchhHhhhccce------eeeEEeeccccccccc-----ccC-----ccCCCcccchhhhccc
Q 002962 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV------GCEVVSLESYFKSEQV-----KDF-----KYDDFSSLDLSLLSKN 576 (862)
Q Consensus 513 ~~~~p~iIgI~G~sGSGKTTla~~L~~~l------~~~vislDdfy~~~~~-----~~~-----n~~~p~t~D~~lL~~~ 576 (862)
..++|+||||+||+||||||++..|...| .+..+|+||||+++.. ... ..+.|||||+.++..+
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 45789999999999999999999988765 2668999999999542 111 2467999999999999
Q ss_pred chhhcCCcc-ccceeeeccc----ccccCceeeeecccceeEEEcceecccHhhh-hccceeee-eecccchheeheeec
Q 002962 577 ISDIRNGRR-TKVPIFDLET----GARSGFKELEVSEDCGVIIFEGVYALHPEIR-KSLDLWIA-VVGGVHSHLISRVQR 649 (862)
Q Consensus 577 L~~L~~g~~-v~~P~yd~~~----~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~-~~~D~~I~-v~~~~d~rl~Rri~R 649 (862)
|+.+.+|++ |.+|.|||+. |||.+...|... +.+|+|+||||+++..+. .++....- +.+..+
T Consensus 126 Lnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~-~vdivIlEGWfvGfrPidp~ll~~p~n~l~~~ed--------- 195 (300)
T COG4240 126 LNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKF-EVDIVILEGWFVGFRPIDPELLAAPVNALEAAED--------- 195 (300)
T ss_pred HHHHhcCCCCcccccccchhccCCCCCCCcccceec-ceeEEEEeeeeeecccCCHHHhCCCCccchhhcc---------
Confidence 999988765 7999999974 788876667653 389999999999873332 12211100 000000
Q ss_pred ccccccccccccceehhhhhhhhhcccccccccccccccCCCCcCCCCcceEEEecCcccchhhhhhhcCccccchhhhh
Q 002962 650 DKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSAQN 729 (862)
Q Consensus 650 d~~~rg~~~~~~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~rl~qe~~~~~~k~~~~~~~~~~~~~m~~~~v~~fv~~ 729 (862)
.|.....+.-+..+.|.|++ |..--...--.|+++|.||+||||.+++ .+.+||+|+||..||++
T Consensus 196 ----~a~~~dvN~kLa~Y~pL~~r-IdsLillta~din~vy~WRlQqEhkliA----------r~~kgmsdeqv~efvn~ 260 (300)
T COG4240 196 ----GAWRADVNDKLAPYRPLFDR-IDSLILLTAPDINTVYAWRLQQEHKLIA----------RLAKGMSDEQVSEFVNA 260 (300)
T ss_pred ----ccHHHHHHhhhhhhHHHHHH-hhheeEecccchHHHHHHHHHHHHHHHH----------HHhccCcHHHHHHHHHH
Confidence 01111112222244555555 2222111112457899999999999873 45579999999999999
Q ss_pred hhhee-eecCCCCCCCccCCCCeEEEEEecce
Q 002962 730 FIDMY-LRLPGIPTNGQLTESDCIRVRICEGR 760 (862)
Q Consensus 730 y~~~Y-l~~~~l~~~~~~~~~~~~~~~~~~~~ 760 (862)
|||.| ||+..+..-..+.--.|+.+-.+.+|
T Consensus 261 ymrsl~lylq~ls~~~al~~~a~leI~~d~nr 292 (300)
T COG4240 261 YMRSLELYLQRLSEWIALDLPAILEIAVDLNR 292 (300)
T ss_pred HHHHHHHHHHHHHHHHHcCCcceeEEeecccc
Confidence 99999 99987764322333467777776543
No 12
>PRK05439 pantothenate kinase; Provisional
Probab=99.94 E-value=2.5e-27 Score=257.63 Aligned_cols=220 Identities=18% Similarity=0.231 Sum_probs=178.7
Q ss_pred HhhcCcccccc-CCCCCCC----ccccccccceeEEecc---ceehhhHHHHHHHH----------------hcCCeEEE
Q 002962 10 FEEGGRDYFQQ-QPSTSSS----SPSILQSLPVHASFDH---GYYLLVKSIQELRE----------------KKGGIVTV 65 (862)
Q Consensus 10 ~~~~~r~~~~~-~~~~~~~----~~~~~~~~~~~~s~~~---~y~~l~~~i~~~~~----------------~~~~~~iI 65 (862)
|.+++|+.|++ ..+++++ +...++++++.+|.++ +|.+|+++|..... ..+.+++|
T Consensus 10 ~~~~~r~~w~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~v~~iy~plarli~~~~~~~~~~~~~~~~fl~~~~~~~~~iI 89 (311)
T PRK05439 10 YLEFSREQWAALRDSTPLTLTEEELERLRGLNDPISLEEVAEIYLPLSRLLNLYVAANQRLQAALEQFLGKNGQKVPFII 89 (311)
T ss_pred ceeECHHHHHHHHhcCCCCCCHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCCCCCEEE
Confidence 77899999999 6666665 5667899999999877 99999999965541 23568999
Q ss_pred eecCCCCCCcchHHHHhhhcee-------eEEEeecccccc---------cCCCCCCCccchHHHHHhhhhhhcCCC-cc
Q 002962 66 GIGGPSGSGKTSLAEKLASVIG-------CTLISMENYRVG---------VDEGNDLDSIDFDALVQNLQDLTEGKD-TL 128 (862)
Q Consensus 66 gItG~sGSGKSTlA~~La~~Lg-------~~vI~~D~~~~~---------~~~~~~~~s~d~~~l~~~L~~l~~~~~-i~ 128 (862)
||+|++||||||+|+.|+..++ +.+|++|+||.. +..++.|+++|++.+.+.|..++.|+. +.
T Consensus 90 gIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk~G~~~v~ 169 (311)
T PRK05439 90 GIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVKSGKPNVT 169 (311)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHHcCCCeEE
Confidence 9999999999999999998663 679999999863 224678999999999999999999986 99
Q ss_pred ccccccccccccccceeeccCceEEEEcccchhh-Hh------hhhccceEEEEEeceeeeeeeeeecccCC-----c--
Q 002962 129 IPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-AR------LRSLLDIRVAVVGGVHFSLISKVQYDIGD-----S-- 194 (862)
Q Consensus 129 ~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~------l~~~~D~~I~Vda~~~~~l~R~i~RD~~~-----~-- 194 (862)
.|.||+..+++.........+.++||+||+++++ +. +++++|++|||+++.+....|++.|...- +
T Consensus 170 ~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~~lr~~~~rdp 249 (311)
T PRK05439 170 APVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFLKLRETAFSDP 249 (311)
T ss_pred eeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhhcCc
Confidence 9999999999886555566678899999999885 33 48999999999999999888777765421 1
Q ss_pred ---------cchhhHHh--------hhhhhhhcccCCCcccceeecCCccch
Q 002962 195 ---------CSLDSLID--------SIFPLFRKHIEPDLHHAQIRINNRFVS 229 (862)
Q Consensus 195 ---------~~~e~~~~--------~~~p~~~k~Iep~~~~ADiII~N~~~~ 229 (862)
.+.+++.+ ...|+++++|.|++.+||+||+++..+
T Consensus 250 ~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~~~h 301 (311)
T PRK05439 250 DSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKGADH 301 (311)
T ss_pred chhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCCCCC
Confidence 12222221 236999999999999999999988443
No 13
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.93 E-value=9.7e-27 Score=238.27 Aligned_cols=167 Identities=32% Similarity=0.575 Sum_probs=148.3
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceee---EEEeecccccc----------cCCCCCCCccchHHHHHhhhhhhcCCC
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGC---TLISMENYRVG----------VDEGNDLDSIDFDALVQNLQDLTEGKD 126 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~---~vI~~D~~~~~----------~~~~~~~~s~d~~~l~~~L~~l~~~~~ 126 (862)
.+.++|||+|+|||||||+|+.|.+.|+. .+|+.|+||+. ..+++.|+++|++++.+.|..|+.|+.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 45689999999999999999999999984 59999999873 235678999999999999999999999
Q ss_pred ccccccccccccccccceeeccCceEEEEcccchhh-HhhhhccceEEEEEeceeeeeeeeeecccCCc-cchhhHHhh-
Q 002962 127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDS- 203 (862)
Q Consensus 127 i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~-~~~e~~~~~- 203 (862)
+..|.|++..+.+... .....+.++||+||++++. ..+++++|++|||++|.+.|+.||+.||...+ .+.+..+++
T Consensus 86 v~~P~yd~~~~~r~~~-~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~qy 164 (218)
T COG0572 86 VDLPVYDYKTHTREPE-TIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQY 164 (218)
T ss_pred ccccccchhcccccCC-ccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999863 4445678899999999998 59999999999999999999999999999877 577666654
Q ss_pred ---hhhhhhcccCCCcccceeecCCcc
Q 002962 204 ---IFPLFRKHIEPDLHHAQIRINNRF 227 (862)
Q Consensus 204 ---~~p~~~k~Iep~~~~ADiII~N~~ 227 (862)
+.|++++||+|++++||+||+-..
T Consensus 165 ~~~vkp~~~~fIeptk~~ADiiip~~~ 191 (218)
T COG0572 165 VKTVRPMYEQFIEPTKKYADIIIPSGG 191 (218)
T ss_pred HHhhChhhhhccCcccccceEEeecCC
Confidence 579999999999999999998763
No 14
>PRK05439 pantothenate kinase; Provisional
Probab=99.93 E-value=1.8e-27 Score=258.71 Aligned_cols=240 Identities=18% Similarity=0.239 Sum_probs=170.6
Q ss_pred cceeEEeEeeccCCCCCCCc--cccCCcccCceeeeeCCCcc-ccCccchhhHHHHH-------HHHh--cCCCcEEEee
Q 002962 455 EPVLATWHFISSDPSHAGSS--VIGSSSFRDTVKLVPMPDSY-DFDRGLLLSVQAIQ-------ALLE--NKGLPVIVGI 522 (862)
Q Consensus 455 ~~~~~~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~i~-------~~~~--~~~~p~iIgI 522 (862)
.....+|+.+..+.+.+|++ +....++.+.+.+..+.+-| ++.+-+.++....+ .... ..+.|++|||
T Consensus 12 ~~~r~~w~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~v~~iy~plarli~~~~~~~~~~~~~~~~fl~~~~~~~~~iIgI 91 (311)
T PRK05439 12 EFSREQWAALRDSTPLTLTEEELERLRGLNDPISLEEVAEIYLPLSRLLNLYVAANQRLQAALEQFLGKNGQKVPFIIGI 91 (311)
T ss_pred eECHHHHHHHHhcCCCCCCHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCCCCCEEEEE
Confidence 46778999777777777766 33333444443332222222 12211112221111 1122 4568999999
Q ss_pred cCCCCCCcchhHhhhcccee-------eeEEeeccccccccc----ccC-ccCCCcccchhhhcccchhhcCCcc-ccce
Q 002962 523 GGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----KDF-KYDDFSSLDLSLLSKNISDIRNGRR-TKVP 589 (862)
Q Consensus 523 ~G~sGSGKTTla~~L~~~l~-------~~vislDdfy~~~~~----~~~-n~~~p~t~D~~lL~~~L~~L~~g~~-v~~P 589 (862)
+|++||||||+|+.|+..++ +.++++||||++... +.+ +++.|+++|+++|.+.|..|++|+. +.+|
T Consensus 92 aG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk~G~~~v~~P 171 (311)
T PRK05439 92 AGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVKSGKPNVTAP 171 (311)
T ss_pred ECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHHcCCCeEEee
Confidence 99999999999999998663 679999999998432 222 3678999999999999999999997 9999
Q ss_pred eeecccccccCceeeeecccceeEEEcceeccc-Hh------hhhccceeeeeecccchheeheeecccccccc------
Q 002962 590 IFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PE------IRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC------ 656 (862)
Q Consensus 590 ~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~-~~------l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~------ 656 (862)
.||+.++++.+.. .....+.+||||||++++. +. +++++|++|||+++.+....|++.|+...++.
T Consensus 172 ~Yd~~~~d~~~~~-~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~~lr~~~~rdp~ 250 (311)
T PRK05439 172 VYSHLIYDIVPGE-KQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFLKLRETAFSDPD 250 (311)
T ss_pred eEEeecCCcCCCc-eEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhhcCcc
Confidence 9999999987533 3344678999999999985 33 49999999999999999888888887643221
Q ss_pred ---------cccc------cceehhhhhhhhhcccccccccccccccCCCCcCC
Q 002962 657 ---------FMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLS 695 (862)
Q Consensus 657 ---------~~~~------~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~rl~ 695 (862)
+.++ .+|.....|++.+||.|++.+||+||..+.+..+.
T Consensus 251 s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~~~h~i~ 304 (311)
T PRK05439 251 SYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKGADHSIE 304 (311)
T ss_pred hhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCCCCCcee
Confidence 1111 12333467999999999999999999887665443
No 15
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.93 E-value=6.9e-27 Score=246.19 Aligned_cols=167 Identities=18% Similarity=0.339 Sum_probs=144.2
Q ss_pred EEeecCCCCCCcchhHhhhcccee-----eeEEeecccccccc-----------cccCccCC--Ccccchhhhcccchhh
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQ-----------VKDFKYDD--FSSLDLSLLSKNISDI 580 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy~~~~-----------~~~~n~~~--p~t~D~~lL~~~L~~L 580 (862)
||||+|+|||||||++++|++.|+ +.+|+.|+||+... ....||++ |+++|+++|.+.|..|
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L 80 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTY 80 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHH
Confidence 589999999999999999998774 78999999999411 12368999 9999999999999999
Q ss_pred cCCccccceeeecc----------cccccCceeeeecccceeEEEcceeccc----Hhhhhccceeeeeecccchheehe
Q 002962 581 RNGRRTKVPIFDLE----------TGARSGFKELEVSEDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHLISR 646 (862)
Q Consensus 581 ~~g~~v~~P~yd~~----------~~~r~~~~~~~~~~~~~vVIvEG~~~~~----~~l~~~~D~~I~v~~~~d~rl~Rr 646 (862)
++|+.+..|.||+. .|.+.++.. ...|.+|||+||+|.+. ..+++++|++|||+++.++++.||
T Consensus 81 ~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~--~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~irR 158 (277)
T cd02029 81 GETGRGRSRYYLHSDEEAAPFNQEPGTFTPWED--LPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQK 158 (277)
T ss_pred HcCCCcccceeeccccccccccCCCCccCCccc--ccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHHH
Confidence 99999999999883 345544322 24678999999999543 689999999999999999999999
Q ss_pred eecccccccccccc--cceehhhhhhhhhccccccccccccccc
Q 002962 647 VQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRN 688 (862)
Q Consensus 647 i~Rd~~~rg~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n 688 (862)
+.||..+||++.+. .+|...+ |.|..||.|++.+||++|+.
T Consensus 159 I~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fqr 201 (277)
T cd02029 159 IHRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQR 201 (277)
T ss_pred HHhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEec
Confidence 99999999999986 6777777 99999999999999999753
No 16
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=99.92 E-value=2.3e-25 Score=224.99 Aligned_cols=137 Identities=20% Similarity=0.248 Sum_probs=123.7
Q ss_pred cccccCCcccccceeeeeccCCCchhhhhcccceeeeecceeEEEeeCceeeeccceeeccccceeeec----eeccchh
Q 002962 250 ISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGLL 325 (862)
Q Consensus 250 ~~~~~~~~~e~d~Y~~~~~r~~~~~~~al~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~~~L~ 325 (862)
++.+.+...|+|.||+.|++++..++.++ |||+.++++.+|||||+.++.. +.+.|+|+.| +|.++|.
T Consensus 24 g~~~~~~~~q~D~Yfd~p~~~l~~~~~~L-----RiR~~~~~~~lT~Kgp~~~~~~---~~~~E~e~~v~d~~~~~~iL~ 95 (174)
T TIGR00318 24 GFKFIKKEFQHDIYFSNPCRDFASTDEAL-----RIRKLTGEKFVTYKGPKIDNES---KTRKEIEFKIEDIENALQILK 95 (174)
T ss_pred CcccccccceEEEeecCCCcchhhCCcEE-----EEEEcCCcEEEEEeCCccCCcc---eEEEEEEEEECCHHHHHHHHH
Confidence 35667788999999999999998877765 9999888999999999876654 9999999999 8999999
Q ss_pred ccccEEEEEEeeceeeEeeCeeEEeeehhccccceEEEEEcCCc---------cchhhhhhhccccCCcchHHHHHHHH
Q 002962 326 DLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNR---------KTVGAEALRMGINGPWITKSYLEMVL 395 (862)
Q Consensus 326 ~LGy~~~~~~~K~R~~~~~~~~~v~lD~v~~lG~~FvEiE~~~~---------~~v~~~~~~Lgl~~~~~~~sYlel~l 395 (862)
+|||.++++++|.|++|++++++|+||.|+|||. |||||++.+ +.+.++|++||+.++.+++||+||++
T Consensus 96 ~LG~~~~~~v~K~R~~~~l~~~~i~lD~v~~lG~-FvEIE~~~~~~~~~~~~~~~i~~~~~~LGl~~~~~~~sY~ell~ 173 (174)
T TIGR00318 96 KLGFKKVYEVIKKRRIYQTNELNVSIDDVEGLGF-FLEIEKIINNINDKDLALEEIFEIINQLGIKDNIERRSYLELLS 173 (174)
T ss_pred HCCCeEEEEEEEEEEEEEECCEEEEEEccCCCcc-EEEEEEecCCccchHHHHHHHHHHHHHcCCCcCcccccHHHHhh
Confidence 9999999999999999999999999999999998 999999843 47899999999955569999999984
No 17
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.92 E-value=9.6e-26 Score=229.03 Aligned_cols=166 Identities=40% Similarity=0.637 Sum_probs=141.0
Q ss_pred EEeecCCCCCCcchhHhhhccce-----eeeEEeeccccccc---ccccCccCCCcccchhhhcccchhhcCCcccccee
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFKSE---QVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPI 590 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdfy~~~---~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~ 590 (862)
+|||+|++||||||||+.|++.+ ++.++++||||++. .....+++.|..+|+++|.++|..|++|+.+.+|.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 58999999999999999999986 47899999999964 12234677888899999999999999999999999
Q ss_pred eecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccch-heeheeecccccccccccc--cceehhh
Q 002962 591 FDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHS-HLISRVQRDKSRMGCFMSQ--NDIMMTV 667 (862)
Q Consensus 591 yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~-rl~Rri~Rd~~~rg~~~~~--~~~~~~v 667 (862)
||+.++.+.+... ....+.+|||+||+|++++.+++++|++||++++.+. |+.||+.||..+||++.+. .+ +..
T Consensus 81 yd~~~~~~~~~~~-~~~~~~~vIIvEG~~~l~~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~--~~~ 157 (179)
T cd02028 81 YDFRTGKRRGYRK-LKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILM--WPS 157 (179)
T ss_pred ceeECCccCCCce-EEeCCCCEEEEecHHhcCHhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhh--ccc
Confidence 9999999875322 2346789999999999999999999999999999998 9999999999999999876 33 345
Q ss_pred hhhhhhcc-cccccccccccc
Q 002962 668 FPMFQQHI-EPHLVHAHLKIR 687 (862)
Q Consensus 668 ~p~~~~~I-~p~~~~ADivI~ 687 (862)
.|+++.|+ .|.+..||++++
T Consensus 158 ~~~~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 158 VPSGEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred ccCchhhcCCCchhccceecc
Confidence 56666555 677899998864
No 18
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.91 E-value=7.6e-26 Score=244.52 Aligned_cols=180 Identities=19% Similarity=0.210 Sum_probs=143.7
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhcccee-------eeEEeeccccccccc-----ccCccCCCcccchhhhcccchhhc
Q 002962 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV-----KDFKYDDFSSLDLSLLSKNISDIR 581 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~-------~~vislDdfy~~~~~-----~~~n~~~p~t~D~~lL~~~L~~L~ 581 (862)
.+.|++|||+||+||||||+|+.|+..+. +.++++|+||.+... ...+++.|+++|.+++.+.+..|+
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence 46799999999999999999999877663 678999999987432 112467899999999999999999
Q ss_pred CCcc-ccceeeecccccccCceeeeecccceeEEEcceeccc-Hh----------hhhccceeeeeecccchheeheeec
Q 002962 582 NGRR-TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PE----------IRKSLDLWIAVVGGVHSHLISRVQR 649 (862)
Q Consensus 582 ~g~~-v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~-~~----------l~~~~D~~I~v~~~~d~rl~Rri~R 649 (862)
+|+. +.+|.||+.++++.+.. .....+.+|||+||||++. +. +++++|++|||++|.+.+..|++.|
T Consensus 139 ~g~~~v~~P~Yd~~~~d~~~~~-~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~R 217 (290)
T TIGR00554 139 SGKPNVTAPVYSHLTYDVIPDG-FKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINR 217 (290)
T ss_pred CCCCceecCccccccCCcCCCC-eEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHHH
Confidence 9986 99999999999998643 3444678999999999985 33 5799999999999999999998888
Q ss_pred ccccc--c-cccc------------c------cceehhhhhhhhhcccccccccccccccCCCCcC
Q 002962 650 DKSRM--G-CFMS------------Q------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVL 694 (862)
Q Consensus 650 d~~~r--g-~~~~------------~------~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~rl 694 (862)
+..-+ + +..+ . ..|.....|++.+||.|++.+||+||..+-+..+
T Consensus 218 ~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~~h~i 283 (290)
T TIGR00554 218 FLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGANHAV 283 (290)
T ss_pred HHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecCCCCcE
Confidence 64322 2 1111 0 1123346789999999999999999987766544
No 19
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.90 E-value=3.2e-25 Score=232.31 Aligned_cols=173 Identities=19% Similarity=0.259 Sum_probs=140.1
Q ss_pred EEeecCCCCCCcchhHhhhcccee-------eeEEeeccccccccc----ccC-ccCCCcccchhhhcccchhhcCC-cc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----KDF-KYDDFSSLDLSLLSKNISDIRNG-RR 585 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~-------~~vislDdfy~~~~~----~~~-n~~~p~t~D~~lL~~~L~~L~~g-~~ 585 (862)
||||+||+||||||||+.|+..+. +.++++|+||.+... ... +++.|+++|.+++.+.|..|+.| +.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~ 80 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN 80 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence 689999999999999999998872 678999999987432 112 35679999999999999999994 78
Q ss_pred ccceeeecccccccCceeeeecccceeEEEcceecccHh------hhhccceeeeeecccchh---eeheeecccccccc
Q 002962 586 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE------IRKSLDLWIAVVGGVHSH---LISRVQRDKSRMGC 656 (862)
Q Consensus 586 v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~------l~~~~D~~I~v~~~~d~r---l~Rri~Rd~~~rg~ 656 (862)
+.+|.||+..+++.+. ......+.+||||||++++++. +++++|++|||++|.+.+ +.+|..|+..++|+
T Consensus 81 v~~P~yd~~~~~~~~~-~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r 159 (220)
T cd02025 81 VKIPVYSHLTYDVIPG-EKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFS 159 (220)
T ss_pred EEccccceeccccCCC-CceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998864 2233467799999999999753 899999999999999986 55566666666666
Q ss_pred cccc--c----------------ceehhhhhhhhhcccccccccccccccCCCC
Q 002962 657 FMSQ--N----------------DIMMTVFPMFQQHIEPHLVHAHLKIRNDFDP 692 (862)
Q Consensus 657 ~~~~--~----------------~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~ 692 (862)
.... . +|...+.|++.+||.|.+..||+||..+.+.
T Consensus 160 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~~~~ 213 (220)
T cd02025 160 DPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGADH 213 (220)
T ss_pred CchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeCCCC
Confidence 5542 1 2445688999999999999999999876544
No 20
>PTZ00301 uridine kinase; Provisional
Probab=99.90 E-value=2.5e-24 Score=223.35 Aligned_cols=166 Identities=27% Similarity=0.461 Sum_probs=141.6
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce----e---eEEEeecccccc----------cCCCCCCCccchHHHHHhhhhhhcC
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVI----G---CTLISMENYRVG----------VDEGNDLDSIDFDALVQNLQDLTEG 124 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L----g---~~vI~~D~~~~~----------~~~~~~~~s~d~~~l~~~L~~l~~~ 124 (862)
-++|||+|+|||||||+|+.|++.+ | +.++++|+||+. ..+++.|.++|++.+.+.|..++.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 3799999999999999999887655 2 568999999873 3466889999999999999999999
Q ss_pred CCccccccccccccccccceeeccCceEEEEcccchhh-HhhhhccceEEEEEeceeeeeeeeeecccCCc-cchhhHHh
Q 002962 125 KDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLID 202 (862)
Q Consensus 125 ~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~-~~~e~~~~ 202 (862)
+.+..|.|++..+.+... ....++.+++|+||+++++ +.+++++|+.|||+++.++++.|+++||...+ .+.++...
T Consensus 83 ~~i~~P~yd~~~~~~~~~-~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~~ 161 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSDT-AVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIE 161 (210)
T ss_pred CcccCCCcccccCCcCCc-eEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHHH
Confidence 999999999999887754 3444566899999999985 78999999999999999999999999998765 45555443
Q ss_pred ----hhhhhhhcccCCCcccceeecCCccc
Q 002962 203 ----SIFPLFRKHIEPDLHHAQIRINNRFV 228 (862)
Q Consensus 203 ----~~~p~~~k~Iep~~~~ADiII~N~~~ 228 (862)
...|.+.+||+|++.+||+||+++-.
T Consensus 162 ~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~ 191 (210)
T PTZ00301 162 QYEATVRPMYYAYVEPSKVYADIIVPSWKD 191 (210)
T ss_pred HHHHhhcccHHHHcCccccCCcEEEcCCCc
Confidence 35899999999999999999987644
No 21
>PRK15453 phosphoribulokinase; Provisional
Probab=99.90 E-value=8e-25 Score=232.40 Aligned_cols=172 Identities=19% Similarity=0.287 Sum_probs=143.9
Q ss_pred CCcEEEeecCCCCCCcchhHhhhcccee-----eeEEeeccccc-ccc----------cccCccCC--Ccccchhhhccc
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK-SEQ----------VKDFKYDD--FSSLDLSLLSKN 576 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy~-~~~----------~~~~n~~~--p~t~D~~lL~~~ 576 (862)
.++.+|||+|+|||||||+|+.|++.|+ +.+++.|+||+ +.. ....||++ |++.|+++|.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~ 82 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQL 82 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 4678999999999999999999998774 67999999997 321 11238888 999999999999
Q ss_pred chhhcCCccccceeeecc-----cccccCc--eeeee-cccceeEEEcceeccc----Hhhhhccceeeeeecccchhee
Q 002962 577 ISDIRNGRRTKVPIFDLE-----TGARSGF--KELEV-SEDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHLI 644 (862)
Q Consensus 577 L~~L~~g~~v~~P~yd~~-----~~~r~~~--~~~~~-~~~~~vVIvEG~~~~~----~~l~~~~D~~I~v~~~~d~rl~ 644 (862)
|..+++|+.+..|.|++. .+.+.+. ..|+. .++.+|||+||+|.+. ..++.++|++|||+++.++++.
T Consensus 83 l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~i 162 (290)
T PRK15453 83 FREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEWI 162 (290)
T ss_pred HHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHHH
Confidence 999999999999999743 2444321 22333 3568999999999874 5789999999999999999999
Q ss_pred heeecccccccccccc--cceehhhhhhhhhcccccccccccccc
Q 002962 645 SRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIR 687 (862)
Q Consensus 645 Rri~Rd~~~rg~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~ 687 (862)
||+.||..+||++.+. .++.... |.|.+||.|++.+||+++.
T Consensus 163 rRI~RD~~ERGrs~EsVi~qilrrm-Pdy~~yI~PQ~~~tdInfq 206 (290)
T PRK15453 163 QKIHRDTSERGYSREAVMDTILRRM-PDYINYITPQFSRTHINFQ 206 (290)
T ss_pred HHHHhhhHhhCCCHHHHHHHHHHhC-ChHhhhCCCCcccCcEEEE
Confidence 9999999999999986 5676664 9999999999999999764
No 22
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.90 E-value=2.2e-24 Score=224.29 Aligned_cols=175 Identities=31% Similarity=0.491 Sum_probs=151.4
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhcccee---eeEEeecccccccc------cccCccCCCcccchhhhcccchhhcCCc
Q 002962 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNGR 584 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~---~~vislDdfy~~~~------~~~~n~~~p~t~D~~lL~~~L~~L~~g~ 584 (862)
..++.+|||+|++|||||||++.|+..++ +.++++|+||.... ....++++|.++|++.+.+.|..++.|.
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 82 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGK 82 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCC
Confidence 35789999999999999999999999883 67899999998632 2345688999999999999999999999
Q ss_pred cccceeeecccccccCceeeeecccceeEEEcceeccc-Hhhhhccceeeeeecccchheeheeecccccccccccc--c
Q 002962 585 RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--N 661 (862)
Q Consensus 585 ~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~--~ 661 (862)
.+..|.||+.++.+.+. .. ...+.+++|+||+++++ +.+.+.+|.+|||++|.++++.|++.||...+|.+.+. .
T Consensus 83 ~v~~p~~d~~~~~~~~~-~~-~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~ 160 (209)
T PRK05480 83 AIEIPVYDYTEHTRSKE-TI-RVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVIN 160 (209)
T ss_pred ccccCcccccccccCCC-eE-EeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHH
Confidence 99999999999987642 22 23557899999999997 78999999999999999999999999999888887664 4
Q ss_pred ceehhhhhhhhhcccccccccccccccCC
Q 002962 662 DIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (862)
Q Consensus 662 ~~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (862)
.|...+.|.|..|++|.+..||+||+|+.
T Consensus 161 ~~~~~~~~~~~~~i~~~~~~AD~vI~~~~ 189 (209)
T PRK05480 161 QYLSTVRPMHLQFIEPSKRYADIIIPEGG 189 (209)
T ss_pred HHHHhhhhhHHhhccHhhcceeEEecCCC
Confidence 55566789999999999999999999864
No 23
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.89 E-value=1.2e-23 Score=227.55 Aligned_cols=202 Identities=16% Similarity=0.196 Sum_probs=162.8
Q ss_pred ccccccccceeEEecc---ceehhhHHHHHHHH----------------hcCCeEEEeecCCCCCCcchHHHHhhhcee-
Q 002962 28 SPSILQSLPVHASFDH---GYYLLVKSIQELRE----------------KKGGIVTVGIGGPSGSGKTSLAEKLASVIG- 87 (862)
Q Consensus 28 ~~~~~~~~~~~~s~~~---~y~~l~~~i~~~~~----------------~~~~~~iIgItG~sGSGKSTlA~~La~~Lg- 87 (862)
+...++++++.+|.++ +|.+|++.+..+.. ..+.|++|||+|++||||||+|+.|+..+.
T Consensus 9 ~~~~~~~~~~~~~~~~v~~iy~pl~~~~~~~~~~~~~~~~~~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~~ 88 (290)
T TIGR00554 9 EIKRLKGINEDLSLEEVATIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQALLSR 88 (290)
T ss_pred HHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5566889999999877 99999999966542 135689999999999999999999877653
Q ss_pred ------eEEEeecccccc---------cCCCCCCCccchHHHHHhhhhhhcCCC-ccccccccccccccccceeeccCce
Q 002962 88 ------CTLISMENYRVG---------VDEGNDLDSIDFDALVQNLQDLTEGKD-TLIPMFDYQQKNRIGSKVIKGASSG 151 (862)
Q Consensus 88 ------~~vI~~D~~~~~---------~~~~~~~~s~d~~~l~~~L~~l~~~~~-i~~p~~~~~~~~~~~~~~~~~~~~~ 151 (862)
+.++++|+||.. +..++.|+++|.+.+.+.|..++.|.. +..|.||+..+++.........+.+
T Consensus 89 ~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~d 168 (290)
T TIGR00554 89 WPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPD 168 (290)
T ss_pred cCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHHCCCCceecCccccccCCcCCCCeEEcCCCC
Confidence 678999999763 234678999999999999999999985 9999999999998876555557789
Q ss_pred EEEEcccchhh-Hh----------hhhccceEEEEEeceeeeeeeeeecccCCc----------------cchhhHH---
Q 002962 152 VVIVDGTYALD-AR----------LRSLLDIRVAVVGGVHFSLISKVQYDIGDS----------------CSLDSLI--- 201 (862)
Q Consensus 152 vVIvEG~~l~~-~~----------l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~----------------~~~e~~~--- 201 (862)
|||+||+++++ +. +++++|++||||+|.+.+..|+++|...-+ .+.++..
T Consensus 169 IiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~R~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~ 248 (290)
T TIGR00554 169 ILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLSKEEAIKTA 248 (290)
T ss_pred EEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHH
Confidence 99999999986 22 579999999999999999988888753111 1222222
Q ss_pred ----hh-hhhhhhcccCCCcccceeecCCccch
Q 002962 202 ----DS-IFPLFRKHIEPDLHHAQIRINNRFVS 229 (862)
Q Consensus 202 ----~~-~~p~~~k~Iep~~~~ADiII~N~~~~ 229 (862)
.+ ..|++.++|.|++.+||+|++++-..
T Consensus 249 ~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~~h 281 (290)
T TIGR00554 249 MTIWKEINWLNLKQNILPTRERASLILTKGANH 281 (290)
T ss_pred HHHHHHcchhhHHhhCCCCcccccEEEecCCCC
Confidence 11 27999999999999999999988443
No 24
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.88 E-value=9.5e-24 Score=217.15 Aligned_cols=163 Identities=32% Similarity=0.542 Sum_probs=136.3
Q ss_pred EEeecCCCCCCcchHHHHhhhcee---------eEEEeecccccc------------cCCCCCCCccchHHHHHhhhhhh
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIG---------CTLISMENYRVG------------VDEGNDLDSIDFDALVQNLQDLT 122 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg---------~~vI~~D~~~~~------------~~~~~~~~s~d~~~l~~~L~~l~ 122 (862)
||||+|++||||||+|+.|+..|+ ..++++|+|+.. ...++.|+++|++.+.+.|..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 699999999999999999999886 467889998652 22456789999999999999999
Q ss_pred cCCCccccccccccccccccceeeccCceEEEEcccchhh-HhhhhccceEEEEEeceeeeeeeeeecccCCc-cchhhH
Q 002962 123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSL 200 (862)
Q Consensus 123 ~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~-~~~e~~ 200 (862)
.|+.+..|.|++..+.+...... ..+.++||+||++++. +.+++++|++|||+++.++++.|++.||...+ .+.+++
T Consensus 81 ~g~~i~~p~yd~~~~~~~~~~~~-~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~~ 159 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDPWIII-ISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEEV 159 (194)
T ss_dssp TTSCEEEEEEETTTTEEEEEEEE-EES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHHH
T ss_pred CCCcccccccccccccceeeeee-cCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCcceeE
Confidence 99999999999999888774333 4567899999999876 67899999999999999999999999998766 566666
Q ss_pred Hhh---hhhhhhcccCCCcccceeecCCcc
Q 002962 201 IDS---IFPLFRKHIEPDLHHAQIRINNRF 227 (862)
Q Consensus 201 ~~~---~~p~~~k~Iep~~~~ADiII~N~~ 227 (862)
+++ ..|.+.+||+|++++||+||++..
T Consensus 160 ~~~~~~~~~~~~~~I~p~~~~ADivi~~~~ 189 (194)
T PF00485_consen 160 IAQYERVRPGYERYIEPQKERADIVIPSGP 189 (194)
T ss_dssp HHHHHTHHHHHHHCTGGGGGG-SEEEESCT
T ss_pred EEEeecCChhhhhheeccccccEEEECCCC
Confidence 654 479999999999999999998863
No 25
>PRK07429 phosphoribulokinase; Provisional
Probab=99.88 E-value=2.9e-23 Score=228.68 Aligned_cols=208 Identities=22% Similarity=0.334 Sum_probs=164.3
Q ss_pred cCCCcEEEeecCCCCCCcchhHhhhcccee---eeEEeeccccccc--ccccCc--cCCCcccchhhhcccchhhcCCcc
Q 002962 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSE--QVKDFK--YDDFSSLDLSLLSKNISDIRNGRR 585 (862)
Q Consensus 513 ~~~~p~iIgI~G~sGSGKTTla~~L~~~l~---~~vislDdfy~~~--~~~~~n--~~~p~t~D~~lL~~~L~~L~~g~~ 585 (862)
+.++|++|||+|+||||||||++.|+..++ +.++++||||... +..... .-+|.++|++++.+.+..|++|+.
T Consensus 4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~ 83 (327)
T PRK07429 4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQP 83 (327)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCc
Confidence 356899999999999999999999999987 7799999997531 111122 336889999999999999999999
Q ss_pred ccceeeecccccccCceeeeecccceeEEEcceeccc-Hhhhhccceeeeeecccchheeheeecccccccccccc-cce
Q 002962 586 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-NDI 663 (862)
Q Consensus 586 v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~-~~~ 663 (862)
+.+|.||+.++...+. ....+.++||+||+++++ ..+++.+|++|||+++.++++.|+++||..++|.+.+. .+.
T Consensus 84 I~~P~yd~~~g~~~~~---~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~ 160 (327)
T PRK07429 84 ILKPIYNHETGTFDPP---EYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAE 160 (327)
T ss_pred eecceeecCCCCcCCc---EecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence 9999999999876542 234567999999999765 67889999999999999999999999999999987765 345
Q ss_pred ehhhhhhhhhcccccccccccccccCCCCcC--CCCcceEEEecCcccchhhhhhhcCccccchhhhhhhheeeecCC
Q 002962 664 MMTVFPMFQQHIEPHLVHAHLKIRNDFDPVL--SPESSLFVLKSNKQVAYQDILKILDPAKFCSSAQNFIDMYLRLPG 739 (862)
Q Consensus 664 ~~~v~p~~~~~I~p~~~~ADivI~n~~~~rl--~qe~~~~~~k~~~~~~~~~~~~~m~~~~v~~fv~~y~~~Yl~~~~ 739 (862)
+....|.+.+||.|.+..||+||++...--. ..+...++.+- .| ++-+..|-|.|++.++
T Consensus 161 i~~r~pd~~~yI~P~k~~ADiVI~~~p~~~~~~~~~~~~l~v~l-----------i~-----~~~~~~~~~~~~~d~~ 222 (327)
T PRK07429 161 IEAREPDFEAYIRPQRQWADVVIQFLPTQLIDNDEENKVLRVRL-----------VL-----RPGIPHPDPAYLFDEG 222 (327)
T ss_pred HHHhCccHhhhhcccccCCCEEEEcCCCcCCCCCCCCcEEEEEE-----------Ee-----cCCCCCCCcceeeccc
Confidence 5567899999999999999999987543211 23333333221 11 2347788899998887
No 26
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.86 E-value=1.3e-22 Score=209.05 Aligned_cols=172 Identities=34% Similarity=0.517 Sum_probs=146.3
Q ss_pred EEeecCCCCCCcchhHhhhccce---eeeEEeecccccccc------cccCccCCCcccchhhhcccchhhcCCccccce
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIV---GCEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVP 589 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l---~~~vislDdfy~~~~------~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P 589 (862)
+|||+||+|||||||++.|+..+ ++.++++|+||.+.. ....+++.|.++|++++.+.|..++.|+.+..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 58999999999999999999987 388999999997522 123457889999999999999999999999999
Q ss_pred eeecccccccCceeeeecccceeEEEcceeccc-Hhhhhccceeeeeecccchheeheeecccccccccccc--cceehh
Q 002962 590 IFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMT 666 (862)
Q Consensus 590 ~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~--~~~~~~ 666 (862)
.||++++.+... .. ...+.+++|+||+++++ +.+.+.+|..|||+++.+.++.|++.||...+|.+.+. ..+...
T Consensus 81 ~~d~~~~~~~~~-~~-~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~ 158 (198)
T cd02023 81 VYDFKTHSRLKE-TV-TVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKF 158 (198)
T ss_pred ccccccCcccCC-ce-ecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHh
Confidence 999999987642 22 34567999999999987 68889999999999999999999999998888877654 455566
Q ss_pred hhhhhhhcccccccccccccccCCCC
Q 002962 667 VFPMFQQHIEPHLVHAHLKIRNDFDP 692 (862)
Q Consensus 667 v~p~~~~~I~p~~~~ADivI~n~~~~ 692 (862)
..+.+..|+++.+..||++|+|+-+.
T Consensus 159 ~~~~~~~~i~~~~~~aD~ii~~~~~~ 184 (198)
T cd02023 159 VKPMHEQFIEPTKRYADVIIPRGGDN 184 (198)
T ss_pred hhhhHHHhCccchhceeEEECCCCCc
Confidence 78899999999999999999885543
No 27
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.86 E-value=1.4e-22 Score=210.60 Aligned_cols=175 Identities=32% Similarity=0.517 Sum_probs=148.8
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhcccee---eeEEeecccccccc------cccCccCCCcccchhhhcccchhhcCCc
Q 002962 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNGR 584 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~---~~vislDdfy~~~~------~~~~n~~~p~t~D~~lL~~~L~~L~~g~ 584 (862)
++...+|||+|++|||||||++.|+..++ +.++++|+||.+.. ....+|+.|.++|.+++.+.|+.|+.|+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~ 82 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGS 82 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCC
Confidence 35678999999999999999999998775 67999999997622 2345688899999999999999999999
Q ss_pred cccceeeecccccccCceeeeecccceeEEEcceeccc-Hhhhhccceeeeeecccchheeheeecccccccccccc--c
Q 002962 585 RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--N 661 (862)
Q Consensus 585 ~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~--~ 661 (862)
.+.+|.||+.++++.. ... ...+.+++|+||++++. +.+.+.+|..|||+++.+.++.|++.||...+|...+. .
T Consensus 83 ~v~~p~yd~~~~~~~~-~~~-~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~ 160 (207)
T TIGR00235 83 PIDVPVYDYVNHTRPK-ETV-HIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVID 160 (207)
T ss_pred CEecccceeecCCCCC-ceE-EeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHH
Confidence 9999999999888753 222 23567999999999976 66889999999999999999999999999888877654 4
Q ss_pred ceehhhhhhhhhcccccccccccccccCC
Q 002962 662 DIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (862)
Q Consensus 662 ~~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (862)
+|....+|.|..|+.+.+..||+||+|+-
T Consensus 161 ~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~ 189 (207)
T TIGR00235 161 QYRKTVRPMYEQFVEPTKQYADLIIPEGG 189 (207)
T ss_pred HHHHhhhhhHHHhCcccccccEEEEcCCC
Confidence 55566789999999999999999998744
No 28
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.86 E-value=3.4e-22 Score=215.74 Aligned_cols=204 Identities=20% Similarity=0.348 Sum_probs=157.5
Q ss_pred EEeecCCCCCCcchhHhhhccce---eeeEEeecccccccc--cc--cCccCCCcccchhhhcccchhhcCCccccceee
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIV---GCEVVSLESYFKSEQ--VK--DFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIF 591 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l---~~~vislDdfy~~~~--~~--~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~y 591 (862)
+|||+|++|||||||++.|+..+ ++.++++|+|+.... .. .....+|.+.+++++.+.+..|++|+.+.+|.|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence 58999999999999999999887 467999999986421 11 123446888889999999999999999999999
Q ss_pred ecccccccCceeeeecccceeEEEcceeccc-Hhhhhccceeeeeecccchheeheeecccccccccccc-cceehhhhh
Q 002962 592 DLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-NDIMMTVFP 669 (862)
Q Consensus 592 d~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~-~~~~~~v~p 669 (862)
|+.++...+. ....+.++||+||+++++ +.+++++|++|||+++.+.++.|+++|+..++|.+.+. .+.+....|
T Consensus 81 ~~~~~~~~~~---~~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~r~~ 157 (273)
T cd02026 81 NHVTGLIDPP---ELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEARKP 157 (273)
T ss_pred cccCCCcCCc---EEcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHhhch
Confidence 9999875532 224567999999999875 68999999999999999999999999999999987765 344456789
Q ss_pred hhhhcccccccccccccccCCCCcC--CCCcceEEEecCcccchhhhhhhcCccccchhhhhhhheeeecCCCC
Q 002962 670 MFQQHIEPHLVHAHLKIRNDFDPVL--SPESSLFVLKSNKQVAYQDILKILDPAKFCSSAQNFIDMYLRLPGIP 741 (862)
Q Consensus 670 ~~~~~I~p~~~~ADivI~n~~~~rl--~qe~~~~~~k~~~~~~~~~~~~~m~~~~v~~fv~~y~~~Yl~~~~l~ 741 (862)
.+.+||+|.+.+||+||++....-. +.+..+++++- .| +.-+..|-|.||+.+|..
T Consensus 158 ~~~~~I~P~~~~ADvVI~~~p~~l~~~~~~~~~~r~~l-----------~~-----~~~~~~~~~~~~~~~~~~ 215 (273)
T cd02026 158 DFEAYIDPQKQYADVVIQVLPTQLIPDDTEGKVLRVRL-----------IQ-----KEGVKDFVPVYLFDEGST 215 (273)
T ss_pred hHHHHhccccccCcEEEEccCccCCcccccceEEEEEE-----------Ee-----cCCCCCcCcccccCCCCc
Confidence 9999999999999999975432211 23333333331 11 122455778888877644
No 29
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.86 E-value=1.3e-22 Score=212.27 Aligned_cols=187 Identities=19% Similarity=0.259 Sum_probs=160.8
Q ss_pred HHHhhcCcccccc-CCCCCCC----ccccccccceeEEecc---ceehhhHHHHHHHH----------------hcCCeE
Q 002962 8 RVFEEGGRDYFQQ-QPSTSSS----SPSILQSLPVHASFDH---GYYLLVKSIQELRE----------------KKGGIV 63 (862)
Q Consensus 8 ~~~~~~~r~~~~~-~~~~~~~----~~~~~~~~~~~~s~~~---~y~~l~~~i~~~~~----------------~~~~~~ 63 (862)
+.|..++|+.|+. ..+++.. +...+.++++++|+++ +|.+|++.++.+.. +...++
T Consensus 4 ~~~~~~~~~~w~~~~~~~~~~lt~~e~~~~~~ln~~~~l~eV~~iylpL~~l~~~~~~~~~~~~~~~~~~l~~~~~~~pf 83 (283)
T COG1072 4 SPYLIFSREQWAALRASTPLTLTEEELKRLRGLNEPISLDEVEDIYLPLSRLLQLYVEARERLFAELLRFLGTNNQQRPF 83 (283)
T ss_pred cccEEechhhhhhhhhcCccccCHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCE
Confidence 3578899999999 5556554 5666789999999877 99999999865541 236789
Q ss_pred EEeecCCCCCCcchHHHHhhhcee-------eEEEeecccccc---------cCCCCCCCccchHHHHHhhhhhhcCCC-
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIG-------CTLISMENYRVG---------VDEGNDLDSIDFDALVQNLQDLTEGKD- 126 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg-------~~vI~~D~~~~~---------~~~~~~~~s~d~~~l~~~L~~l~~~~~- 126 (862)
+|||+|++|+||||+|+.|+..+. +.+|.||.|+.. +..+|.|++||...|.+++..++.+.+
T Consensus 84 IIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~vK~~~~~ 163 (283)
T COG1072 84 IIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDVKAGKPD 163 (283)
T ss_pred EEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHHhcCCCc
Confidence 999999999999999999998763 789999999542 446799999999999999999998766
Q ss_pred ccccccccccccccccceeeccCceEEEEcccchhhH-----hhhhccceEEEEEeceeeeeeeeeecccCCc
Q 002962 127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDA-----RLRSLLDIRVAVVGGVHFSLISKVQYDIGDS 194 (862)
Q Consensus 127 i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~-----~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~ 194 (862)
+..|.|++..++.++.+....+.++++|+||+++++. .+.++||++||||++.+...+|.+.|-...+
T Consensus 164 v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl~~g 236 (283)
T COG1072 164 VFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFLKFG 236 (283)
T ss_pred cccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHHHhcc
Confidence 9999999999999998888889999999999999982 6779999999999999999999999876555
No 30
>PLN02348 phosphoribulokinase
Probab=99.85 E-value=5.3e-22 Score=219.82 Aligned_cols=180 Identities=23% Similarity=0.355 Sum_probs=147.5
Q ss_pred eehhhHHHHHHHHhcCCeEEEeecCCCCCCcchHHHHhhhcee--------------------eEEEeecccccc-cC--
Q 002962 45 YYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG--------------------CTLISMENYRVG-VD-- 101 (862)
Q Consensus 45 y~~l~~~i~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~Lg--------------------~~vI~~D~~~~~-~~-- 101 (862)
-.++...+.....+.+.+++|||+|+|||||||+|+.|++.|| +.+|++|+||.. ..
T Consensus 32 ~~~~~~~~~~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r 111 (395)
T PLN02348 32 KSPAASSVVVALAADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGR 111 (395)
T ss_pred cCchhHHHHHhhccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhH
Confidence 3445555655556677899999999999999999999999885 368999999752 11
Q ss_pred -----CCCCCCccchHHHHHhhhhhhcCCCccccccccccccccccceeeccCceEEEEcccchhh-HhhhhccceEEEE
Q 002962 102 -----EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAV 175 (862)
Q Consensus 102 -----~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~V 175 (862)
....|.++|++.+.+.|..|+.|+.+..|.|++..+...... ..++.++||+||.+++. +.+++++|++|||
T Consensus 112 ~~~g~t~ldP~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e--~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyV 189 (395)
T PLN02348 112 KEKGVTALDPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPE--LIEPPKILVIEGLHPMYDERVRDLLDFSIYL 189 (395)
T ss_pred hhcCCccCCcccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCcE--EcCCCcEEEEechhhccCccccccCcEEEEE
Confidence 123468899999999999999999999999999998765543 24567899999999987 4788999999999
Q ss_pred EeceeeeeeeeeecccCCc-cchhhH---HhhhhhhhhcccCCCcccceeecCCc
Q 002962 176 VGGVHFSLISKVQYDIGDS-CSLDSL---IDSIFPLFRKHIEPDLHHAQIRINNR 226 (862)
Q Consensus 176 da~~~~~l~R~i~RD~~~~-~~~e~~---~~~~~p~~~k~Iep~~~~ADiII~N~ 226 (862)
+++.+.++.|+++||...+ .+.+++ ++.+.|.+.+||+|.+.+||+||+--
T Consensus 190 d~~~dvrl~RRI~RD~~eRG~S~EeV~~~i~ar~pd~~~yI~pqk~~ADiVI~v~ 244 (395)
T PLN02348 190 DISDDVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADVVIEVL 244 (395)
T ss_pred ECCHHHHHHHHHHhhHhhcCCCHHHHHHHHHhcCcchhhhcccccccCCEEEEec
Confidence 9999999999999998765 344444 44568999999999999999999643
No 31
>PRK06696 uridine kinase; Validated
Probab=99.85 E-value=5.7e-22 Score=208.43 Aligned_cols=177 Identities=20% Similarity=0.259 Sum_probs=138.8
Q ss_pred cCCCcEEEeecCCCCCCcchhHhhhccce---e--eeEEeeccccccccc-ccCccCCC-----cccchhhhcccchhh-
Q 002962 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFKSEQV-KDFKYDDF-----SSLDLSLLSKNISDI- 580 (862)
Q Consensus 513 ~~~~p~iIgI~G~sGSGKTTla~~L~~~l---~--~~vislDdfy~~~~~-~~~n~~~p-----~t~D~~lL~~~L~~L- 580 (862)
..++|++|||+|++||||||||+.|++.| | +.++|+||||.+... ...++.+| +++|+++|.+.+..+
T Consensus 18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l 97 (223)
T PRK06696 18 NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPL 97 (223)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhc
Confidence 45689999999999999999999999988 3 445679999998432 22344443 789999999987664
Q ss_pred cCCc--cccceeeecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeecccccccccc
Q 002962 581 RNGR--RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM 658 (862)
Q Consensus 581 ~~g~--~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~ 658 (862)
..+. .+..|.||+..+.+... ......+.++||+||++++.+.+.+.+|..||++++.+.++.|++.||...+|...
T Consensus 98 ~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~vviveg~~l~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~~~ 176 (223)
T PRK06696 98 GPNGDRQYRTASHDLKTDIPVHN-PPLLAAPNAVLIVDGTFLLRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGSYE 176 (223)
T ss_pred cCCCceeEeeeeeccccCcccCC-CceecCCCCEEEEecHHHhhhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCCch
Confidence 3432 47888999998765532 22223456899999999998999999999999999999999999999988877533
Q ss_pred cc-cceehhhhhhhhhccccc--ccccccccccCC
Q 002962 659 SQ-NDIMMTVFPMFQQHIEPH--LVHAHLKIRNDF 690 (862)
Q Consensus 659 ~~-~~~~~~v~p~~~~~I~p~--~~~ADivI~n~~ 690 (862)
+. ..+...+.|.+..|+.+. +.+||+||+|+-
T Consensus 177 ~~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 177 EAEKMYLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred HHHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 22 456667788888887555 788999998865
No 32
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.83 E-value=2.8e-21 Score=203.95 Aligned_cols=161 Identities=15% Similarity=0.225 Sum_probs=133.7
Q ss_pred EEeecCCCCCCcchHHHHhhhcee-----eEEEeecccccc----c-----------CCCCC--CCccchHHHHHhhhhh
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVG----V-----------DEGND--LDSIDFDALVQNLQDL 121 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~----~-----------~~~~~--~~s~d~~~l~~~L~~l 121 (862)
+|||+|+|||||||+++.|++.|+ +.+|+.|+||+. + .+.+. |++.|+++|.+.|..+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L 80 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTY 80 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHH
Confidence 599999999999999999998764 689999999881 1 12334 8999999999999999
Q ss_pred hcCCCccccccccc----------cccccccceeeccCceEEEEcccchhh----HhhhhccceEEEEEeceeeeeeeee
Q 002962 122 TEGKDTLIPMFDYQ----------QKNRIGSKVIKGASSGVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSLISKV 187 (862)
Q Consensus 122 ~~~~~i~~p~~~~~----------~~~~~~~~~~~~~~~~vVIvEG~~l~~----~~l~~~~D~~I~Vda~~~~~l~R~i 187 (862)
.+++.+..|.|++. .+.+..+.. ...+.+++|+||.+.+. ..+++++|++|||+.+.++++.|++
T Consensus 81 ~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~-~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~irRI 159 (277)
T cd02029 81 GETGRGRSRYYLHSDEEAAPFNQEPGTFTPWED-LPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQKI 159 (277)
T ss_pred HcCCCcccceeeccccccccccCCCCccCCccc-ccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHHHH
Confidence 99999999999873 233333322 23568899999998433 6899999999999999999999999
Q ss_pred ecccCCc-cchhhHHhhh---hhhhhcccCCCcccceeecCC
Q 002962 188 QYDIGDS-CSLDSLIDSI---FPLFRKHIEPDLHHAQIRINN 225 (862)
Q Consensus 188 ~RD~~~~-~~~e~~~~~~---~p~~~k~Iep~~~~ADiII~N 225 (862)
.||..+| .+.+.+++++ .|.|.+||+|++++||+++.-
T Consensus 160 ~RD~~ERGrs~EsVi~qilrrmpdy~~yI~PQ~~~tDI~fqr 201 (277)
T cd02029 160 HRDTAERGYSAEAVMDTILRRMPDYINYICPQFSRTDINFQR 201 (277)
T ss_pred HhhhHhhCCCHHHHHHHHHHhCchHHhhCCcccccCcEEEec
Confidence 9999888 5777776643 699999999999999999854
No 33
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.83 E-value=2.1e-21 Score=197.65 Aligned_cols=156 Identities=21% Similarity=0.258 Sum_probs=122.2
Q ss_pred EEeecCCCCCCcchhHhhhccce-eeeEEeeccccccccc------ccCccCCCcccchhhhcccchhhcCCccccceee
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQV------KDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIF 591 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l-~~~vislDdfy~~~~~------~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~y 591 (862)
+|||+|+|||||||+|+.|++.+ ++.+|++||||++... +..||++|+++|+++|.+.|..|++|+.+..|.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~~~ 80 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLR 80 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCccc
Confidence 58999999999999999999998 6999999999998432 3358999999999999999999999987666666
Q ss_pred ecccccccCc------------eeeeecccceeEEEcceeccc-Hhhhhccceeeeeecccchheeheeeccccccccc-
Q 002962 592 DLETGARSGF------------KELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCF- 657 (862)
Q Consensus 592 d~~~~~r~~~------------~~~~~~~~~~vVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~- 657 (862)
+....+.... .......+.++||+||.++++ +.+++++|++||++++.+++++||+.||.......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~~~~~~~~ 160 (187)
T cd02024 81 SHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTGYVTLEGF 160 (187)
T ss_pred CccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCCccccCcc
Confidence 5554332110 112234567899999999987 78999999999999999999999999984431111
Q ss_pred cc-c-cceehhhhhhhhhc
Q 002962 658 MS-Q-NDIMMTVFPMFQQH 674 (862)
Q Consensus 658 ~~-~-~~~~~~v~p~~~~~ 674 (862)
-. . ..+...|+|+|.+.
T Consensus 161 w~Dp~~yf~~~v~p~y~~~ 179 (187)
T cd02024 161 WPDPPGYFDGHVWPMYLKH 179 (187)
T ss_pred cCCCCcccccccchhHHHH
Confidence 11 1 34556788888875
No 34
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.83 E-value=5.3e-21 Score=194.32 Aligned_cols=161 Identities=43% Similarity=0.635 Sum_probs=134.1
Q ss_pred EEeecCCCCCCcchHHHHhhhce-----eeEEEeeccccccc-------CCCCCCCccchHHHHHhhhhhhcCCCccccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRVGV-------DEGNDLDSIDFDALVQNLQDLTEGKDTLIPM 131 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L-----g~~vI~~D~~~~~~-------~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~ 131 (862)
+|||+|++||||||+|+.|++.+ ++.+|++|+||+.. ...+.+..+|++.+.+.|..++.++.+..|.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 58999999999999999999986 47899999998743 1223455689999999999999999999999
Q ss_pred cccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceee-eeeeeeecccCCc-cchhhHHhh--hhhh
Q 002962 132 FDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHF-SLISKVQYDIGDS-CSLDSLIDS--IFPL 207 (862)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~-~l~R~i~RD~~~~-~~~e~~~~~--~~p~ 207 (862)
|++..+.+........++.++||+||++++++.+++++|++|||+++.+. ++.|++.||...+ .+.++.+.+ ..|.
T Consensus 81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~~~~~~ 160 (179)
T cd02028 81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMWPSVPS 160 (179)
T ss_pred ceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhcccccC
Confidence 99999988765455667788999999999999999999999999999998 9999999998777 455555553 3566
Q ss_pred hhccc-CCCcccceeecC
Q 002962 208 FRKHI-EPDLHHAQIRIN 224 (862)
Q Consensus 208 ~~k~I-ep~~~~ADiII~ 224 (862)
++.++ .|.++.||+|++
T Consensus 161 ~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 161 GEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred chhhcCCCchhccceecc
Confidence 66555 678888888875
No 35
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.83 E-value=3e-21 Score=202.31 Aligned_cols=165 Identities=18% Similarity=0.276 Sum_probs=130.7
Q ss_pred EEeecCCCCCCcchHHHHhhhcee-------eEEEeeccccccc---------CCCCCCCccchHHHHHhhhhhhcC-CC
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIG-------CTLISMENYRVGV---------DEGNDLDSIDFDALVQNLQDLTEG-KD 126 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg-------~~vI~~D~~~~~~---------~~~~~~~s~d~~~l~~~L~~l~~~-~~ 126 (862)
+|||+|++||||||+|+.|+..+. +.+|++|+||... ...+.|+++|.+.+.+.|..+..+ +.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~ 80 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN 80 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence 589999999999999999998772 6789999997632 135678999999999999999984 68
Q ss_pred ccccccccccccccccceeeccCceEEEEcccchhhHh------hhhccceEEEEEeceeeeeeeeeecccC---Cc-cc
Q 002962 127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDAR------LRSLLDIRVAVVGGVHFSLISKVQYDIG---DS-CS 196 (862)
Q Consensus 127 i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~------l~~~~D~~I~Vda~~~~~l~R~i~RD~~---~~-~~ 196 (862)
+..|.|++..+.+........++.++||+||+++++.. +.+++|++|||++|.+.+..|+.+|... .+ .+
T Consensus 81 v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r~ 160 (220)
T cd02025 81 VKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFSD 160 (220)
T ss_pred EEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999887664444567789999999999853 8999999999999999975555555322 11 11
Q ss_pred h------------hhH--------HhhhhhhhhcccCCCcccceeecCCccc
Q 002962 197 L------------DSL--------IDSIFPLFRKHIEPDLHHAQIRINNRFV 228 (862)
Q Consensus 197 ~------------e~~--------~~~~~p~~~k~Iep~~~~ADiII~N~~~ 228 (862)
. ++. .+...|++.+||.|++.+||+||..+..
T Consensus 161 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~~~ 212 (220)
T cd02025 161 PDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGAD 212 (220)
T ss_pred chhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeCCC
Confidence 1 111 1234799999999999999999987743
No 36
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.82 E-value=1.5e-20 Score=195.53 Aligned_cols=167 Identities=31% Similarity=0.536 Sum_probs=139.8
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhcee---eEEEeeccccccc----------CCCCCCCccchHHHHHhhhhhhcCCC
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMENYRVGV----------DEGNDLDSIDFDALVQNLQDLTEGKD 126 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg---~~vI~~D~~~~~~----------~~~~~~~s~d~~~l~~~L~~l~~~~~ 126 (862)
.++.+|||+|++|||||||++.|++.++ +.++++|+||... ..++.|+++|++.+.+.|..+..+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 83 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGKA 83 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCCc
Confidence 4678999999999999999999999883 6789999997632 12356788999999999999999999
Q ss_pred ccccccccccccccccceeeccCceEEEEcccchhh-HhhhhccceEEEEEeceeeeeeeeeecccCCc-cchhhHHh--
Q 002962 127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLID-- 202 (862)
Q Consensus 127 i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~-~~~e~~~~-- 202 (862)
+..|.|++..+.+.... ....+.+++|+||+++++ +.+.+.+|.+|||++|.++++.|++.||...+ .+.+++.+
T Consensus 84 v~~p~~d~~~~~~~~~~-~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~~ 162 (209)
T PRK05480 84 IEIPVYDYTEHTRSKET-IRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQY 162 (209)
T ss_pred cccCcccccccccCCCe-EEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHHHH
Confidence 99999999988776542 334556799999999997 68889999999999999999999999996554 34444443
Q ss_pred --hhhhhhhcccCCCcccceeecCCcc
Q 002962 203 --SIFPLFRKHIEPDLHHAQIRINNRF 227 (862)
Q Consensus 203 --~~~p~~~k~Iep~~~~ADiII~N~~ 227 (862)
...|.|.++++|.+.+||+||+|+.
T Consensus 163 ~~~~~~~~~~~i~~~~~~AD~vI~~~~ 189 (209)
T PRK05480 163 LSTVRPMHLQFIEPSKRYADIIIPEGG 189 (209)
T ss_pred HHhhhhhHHhhccHhhcceeEEecCCC
Confidence 3468999999999999999999874
No 37
>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily. This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel
Probab=99.82 E-value=9.9e-21 Score=190.60 Aligned_cols=133 Identities=24% Similarity=0.309 Sum_probs=119.6
Q ss_pred cccCCcccccceeeeeccCCCchhhhhcccceeeeecc--eeEEEeeCceeeeccceeeccccceeeec----eeccchh
Q 002962 252 AFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSG--IRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGLL 325 (862)
Q Consensus 252 ~~~~~~~e~d~Y~~~~~r~~~~~~~al~~~~lRiR~~~--~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~~~L~ 325 (862)
.......|+|.||+.|.+++...+.++ |||..+ +++.+|||||...+.. +.+.|+|+.| +|.++|.
T Consensus 24 ~~~~~~~q~d~Yfd~p~~~l~~~~~~L-----RiR~~~~~~~~~lT~K~~~~~~~~---~~~~E~e~~v~~~~~~~~iL~ 95 (169)
T cd07890 24 AEGGREFQEDIYFDHPDRDLAATDEAL-----RLRRMGDSGKTLLTYKGPKLDGGP---KVREEIETEVADPEAMKEILE 95 (169)
T ss_pred ccccceeEeEEEEcCCchhHHhCCCcE-----EEEEeCCCCcEEEEEECCCCCCCc---cceEEEEEecCCHHHHHHHHH
Confidence 344778899999999999998877777 999987 8999999998775433 8999999999 8999999
Q ss_pred ccccEEEEEEeeceeeEeeCeeEEeeehhccccceEEEEEcC------CccchhhhhhhccccCC-cchHHHHHH
Q 002962 326 DLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT------NRKTVGAEALRMGINGP-WITKSYLEM 393 (862)
Q Consensus 326 ~LGy~~~~~~~K~R~~~~~~~~~v~lD~v~~lG~~FvEiE~~------~~~~v~~~~~~Lgl~~~-~~~~sYlel 393 (862)
.|||.+..+++|.|.+|.+++++|+||+|+|||. |+|||++ ..+.+.++++.||+.+. .+++||++|
T Consensus 96 ~lg~~~~~~~~K~R~~~~~~~~~v~lD~~~~lG~-f~EiE~~~~~~~~~~~~l~~~~~~lg~~~~~~~~~sy~~~ 169 (169)
T cd07890 96 RLGFGPVGRVKKEREIYLLGQTRVHLDRVEGLGD-FVEIEVVLEDIEEAEEGLGEAAELLGLLEYDEETLSYLEL 169 (169)
T ss_pred HcCCceeEEEEEEEEEEEECCEEEEEEccCCCCc-eEEEEEEeCCcHHHHHHHHHHHHHcCCCccCchhhhhhcC
Confidence 9999999999999999999999999999999999 9999999 34888999999999885 499999975
No 38
>PRK07667 uridine kinase; Provisional
Probab=99.80 E-value=3.4e-20 Score=190.68 Aligned_cols=172 Identities=17% Similarity=0.278 Sum_probs=130.2
Q ss_pred HHHHhcCCCcEEEeecCCCCCCcchhHhhhccce-----eeeEEeecccccccccc-cCccCC-----Ccccchhhhccc
Q 002962 508 QALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFKSEQVK-DFKYDD-----FSSLDLSLLSKN 576 (862)
Q Consensus 508 ~~~~~~~~~p~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdfy~~~~~~-~~n~~~-----p~t~D~~lL~~~ 576 (862)
+++....+.+++|||+|++||||||+|+.|++.+ ++.++++||||.+.... ..++.. ..++|++.|.+.
T Consensus 8 ~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~ 87 (193)
T PRK07667 8 NIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQK 87 (193)
T ss_pred HHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHH
Confidence 3334455677999999999999999999999977 37799999999874321 111111 235788888764
Q ss_pred -chhhcCCccccceeeecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeeccccccc
Q 002962 577 -ISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMG 655 (862)
Q Consensus 577 -L~~L~~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg 655 (862)
+..|+.++.+.+|.||+..+.+.. .....++.++||+||++++++.+++.+|..|||++|.+.++.|.+.|+.
T Consensus 88 v~~~L~~~~~i~~P~~d~~~~~~~~--~~~~~~~~~vvIvEG~~l~~~~~~~~~d~~v~V~~~~~~~~~R~~~r~~---- 161 (193)
T PRK07667 88 FFRKLQNETKLTLPFYHDETDTCEM--KKVQIPIVGVIVIEGVFLQRKEWRDFFHYMVYLDCPRETRFLRESEETQ---- 161 (193)
T ss_pred HHHhhcCCCeEEEeeeccccccccc--cceecCCCCEEEEEehhhhhhhHHhhceEEEEEECCHHHHHHHHhcccH----
Confidence 688999999999999999977653 1222345799999999998888999999999999999999999998762
Q ss_pred ccccccceehhhhhhhhhcccc--cccccccccc
Q 002962 656 CFMSQNDIMMTVFPMFQQHIEP--HLVHAHLKIR 687 (862)
Q Consensus 656 ~~~~~~~~~~~v~p~~~~~I~p--~~~~ADivI~ 687 (862)
.+. .++...+.|.+..|+.. .+..||+||+
T Consensus 162 ~~~--~~~~~r~~~a~~~y~~~~~~~~~ad~i~~ 193 (193)
T PRK07667 162 KNL--SKFKNRYWKAEDYYLETESPKDRADLVIK 193 (193)
T ss_pred hHH--HHHHHHhHHHHHHHHhhcChHhhCcEEeC
Confidence 222 24444555778888652 2678999874
No 39
>PRK15453 phosphoribulokinase; Provisional
Probab=99.79 E-value=8.8e-20 Score=194.10 Aligned_cols=164 Identities=16% Similarity=0.277 Sum_probs=133.5
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhcee-----eEEEeeccccc-c---c-----------CCCCC--CCccchHHHHHh
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRV-G---V-----------DEGND--LDSIDFDALVQN 117 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~-~---~-----------~~~~~--~~s~d~~~l~~~ 117 (862)
.++.+|||+|+|||||||+|+.|++.|+ +.+++.|+||+ . + .+.+. |++.|+++|.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~ 82 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQL 82 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 4568999999999999999999998774 68899999986 2 1 12345 899999999999
Q ss_pred hhhhhcCCCccccccccc-----cccccc-----cceeeccCceEEEEcccchhh----HhhhhccceEEEEEeceeeee
Q 002962 118 LQDLTEGKDTLIPMFDYQ-----QKNRIG-----SKVIKGASSGVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSL 183 (862)
Q Consensus 118 L~~l~~~~~i~~p~~~~~-----~~~~~~-----~~~~~~~~~~vVIvEG~~l~~----~~l~~~~D~~I~Vda~~~~~l 183 (862)
|..+..++.+..|.|++. .+.+.. ++.. .++.+++|+||.+.+. ..+++++|++|||+.+.++++
T Consensus 83 l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i-~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~ 161 (290)
T PRK15453 83 FREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPL-PEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEW 161 (290)
T ss_pred HHHHhcCCCcceeeccccccccccCCCCCCccCCceEe-cCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHH
Confidence 999999888888887642 133221 2222 2568899999999874 578999999999999999999
Q ss_pred eeeeecccCCc-cchhhHHhhh---hhhhhcccCCCcccceeecC
Q 002962 184 ISKVQYDIGDS-CSLDSLIDSI---FPLFRKHIEPDLHHAQIRIN 224 (862)
Q Consensus 184 ~R~i~RD~~~~-~~~e~~~~~~---~p~~~k~Iep~~~~ADiII~ 224 (862)
.|++.||..+| .+.+.+++++ .|.|.+||.|++.+||+++.
T Consensus 162 irRI~RD~~ERGrs~EsVi~qilrrmPdy~~yI~PQ~~~tdInfq 206 (290)
T PRK15453 162 IQKIHRDTSERGYSREAVMDTILRRMPDYINYITPQFSRTHINFQ 206 (290)
T ss_pred HHHHHhhhHhhCCCHHHHHHHHHHhCChHhhhCCCCcccCcEEEE
Confidence 99999999888 5777776643 79999999999999999664
No 40
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.79 E-value=1.7e-20 Score=196.44 Aligned_cols=194 Identities=17% Similarity=0.210 Sum_probs=145.3
Q ss_pred cceeEEeEeeccCCCCCCCccccCCcccCceeeeeCCCccccCccchhhHH----------HHHHH-------H--hcCC
Q 002962 455 EPVLATWHFISSDPSHAGSSVIGSSSFRDTVKLVPMPDSYDFDRGLLLSVQ----------AIQAL-------L--ENKG 515 (862)
Q Consensus 455 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~----------~i~~~-------~--~~~~ 515 (862)
....++|+.++.+.+.++++ .+-..+.++.+++++.|.--.... +.+.+ + .+..
T Consensus 8 ~~~~~~w~~~~~~~~~~lt~-------~e~~~~~~ln~~~~l~eV~~iylpL~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (283)
T COG1072 8 IFSREQWAALRASTPLTLTE-------EELKRLRGLNEPISLDEVEDIYLPLSRLLQLYVEARERLFAELLRFLGTNNQQ 80 (283)
T ss_pred EechhhhhhhhhcCccccCH-------HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 45678999778777777776 223333444444444433221111 11111 1 2456
Q ss_pred CcEEEeecCCCCCCcchhHhhhcccee-------eeEEeecccccccc----cccCc-cCCCcccchhhhcccchhhcCC
Q 002962 516 LPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQ----VKDFK-YDDFSSLDLSLLSKNISDIRNG 583 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~-------~~vislDdfy~~~~----~~~~n-~~~p~t~D~~lL~~~L~~L~~g 583 (862)
.|+||||+|+.|+||||+|+.|+..+. +.++.||+|+.+.. .+..+ .+-|.|+|...|.+.+..+++|
T Consensus 81 ~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~vK~~ 160 (283)
T COG1072 81 RPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDVKAG 160 (283)
T ss_pred CCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHHhcC
Confidence 899999999999999999999998773 78999999988733 23233 3569999999999999999988
Q ss_pred cc-ccceeeecccccccCceeeeecccceeEEEcceeccc---H--hhhhccceeeeeecccchheeheeecccccccc
Q 002962 584 RR-TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH---P--EIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC 656 (862)
Q Consensus 584 ~~-v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~---~--~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~ 656 (862)
.+ |.+|+||+.+++..+. ...+....+|||+||++++. + .+.+.||+.||||++.+.-..|.+.|....+-.
T Consensus 161 ~~~v~aPvysh~~yD~vpd-~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl~~g~~ 238 (283)
T COG1072 161 KPDVFAPVYSHLIYDPVPD-AFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFLKFGLT 238 (283)
T ss_pred CCccccccccccccccCCC-ceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHHHhcccc
Confidence 77 9999999999998874 44556678999999999986 2 478999999999999999999999998765433
No 41
>PRK06696 uridine kinase; Validated
Probab=99.79 E-value=1.8e-19 Score=189.54 Aligned_cols=170 Identities=23% Similarity=0.258 Sum_probs=130.4
Q ss_pred hcCCeEEEeecCCCCCCcchHHHHhhhce---ee--EEEeecccccccC-----CCCC-----CCccchHHHHHhhhhhh
Q 002962 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVI---GC--TLISMENYRVGVD-----EGND-----LDSIDFDALVQNLQDLT 122 (862)
Q Consensus 58 ~~~~~~iIgItG~sGSGKSTlA~~La~~L---g~--~vI~~D~~~~~~~-----~~~~-----~~s~d~~~l~~~L~~l~ 122 (862)
..+++++|||+|++||||||+|+.|++.| |. .++++|+||.... +... .+++|++.|.+.+....
T Consensus 18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l 97 (223)
T PRK06696 18 NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPL 97 (223)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhc
Confidence 45678999999999999999999999988 44 4467999987532 1122 26899999999888754
Q ss_pred -cCC--CccccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCcc----
Q 002962 123 -EGK--DTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC---- 195 (862)
Q Consensus 123 -~~~--~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~---- 195 (862)
.+. .+..|.|++..+..........++..+||+||++++++.+.+.+|++|||+++.+.+++|++.||...++
T Consensus 98 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~~~~ 177 (223)
T PRK06696 98 GPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGSYEE 177 (223)
T ss_pred cCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCCchH
Confidence 332 3555678887766543333444567799999999999999999999999999999999999999854432
Q ss_pred chhhHHhhhhhhhhcccCCC--cccceeecCCcc
Q 002962 196 SLDSLIDSIFPLFRKHIEPD--LHHAQIRINNRF 227 (862)
Q Consensus 196 ~~e~~~~~~~p~~~k~Iep~--~~~ADiII~N~~ 227 (862)
....+++++.|.+..|+.+. +++||+||+|+.
T Consensus 178 ~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 178 AEKMYLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred HHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 23445566778888887444 899999999984
No 42
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.78 E-value=1.9e-19 Score=185.69 Aligned_cols=164 Identities=32% Similarity=0.544 Sum_probs=136.4
Q ss_pred EEeecCCCCCCcchHHHHhhhce---eeEEEeecccccccC----------CCCCCCccchHHHHHhhhhhhcCCCcccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISMENYRVGVD----------EGNDLDSIDFDALVQNLQDLTEGKDTLIP 130 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L---g~~vI~~D~~~~~~~----------~~~~~~s~d~~~l~~~L~~l~~~~~i~~p 130 (862)
+|||+|++||||||+++.|+..+ ++.++++|+||..+. .+..|.+++++.+.+.|..+..++.+..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 58999999999999999999987 388999999986432 24567889999999999999999899999
Q ss_pred ccccccccccccceeeccCceEEEEcccchhh-HhhhhccceEEEEEeceeeeeeeeeecccCCc-cchhhHH----hhh
Q 002962 131 MFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLI----DSI 204 (862)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~-~~~e~~~----~~~ 204 (862)
.|++..+.+..... ...+.+++|+||+++++ +.+.+.+|.+|||+++.+.++.|++.||...+ .+.++.. ...
T Consensus 81 ~~d~~~~~~~~~~~-~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~ 159 (198)
T cd02023 81 VYDFKTHSRLKETV-TVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFV 159 (198)
T ss_pred ccccccCcccCCce-ecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHhh
Confidence 99999888765433 45567899999999987 67888999999999999999999999996554 2333333 344
Q ss_pred hhhhhcccCCCcccceeecCCccc
Q 002962 205 FPLFRKHIEPDLHHAQIRINNRFV 228 (862)
Q Consensus 205 ~p~~~k~Iep~~~~ADiII~N~~~ 228 (862)
.+.+..|++|++.+||+||+|+-.
T Consensus 160 ~~~~~~~i~~~~~~aD~ii~~~~~ 183 (198)
T cd02023 160 KPMHEQFIEPTKRYADVIIPRGGD 183 (198)
T ss_pred hhhHHHhCccchhceeEEECCCCC
Confidence 689999999999999999998743
No 43
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.77 E-value=4.7e-19 Score=184.21 Aligned_cols=168 Identities=32% Similarity=0.531 Sum_probs=137.2
Q ss_pred cCCeEEEeecCCCCCCcchHHHHhhhcee---eEEEeeccccccc----------CCCCCCCccchHHHHHhhhhhhcCC
Q 002962 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMENYRVGV----------DEGNDLDSIDFDALVQNLQDLTEGK 125 (862)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg---~~vI~~D~~~~~~----------~~~~~~~s~d~~~l~~~L~~l~~~~ 125 (862)
++...+|||+|++||||||+++.|+..++ +.++++|+|+... ...+.|++++...+.+.|..+..++
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~ 82 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGS 82 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCC
Confidence 35568999999999999999999998775 6789999987531 1234578899999999999999999
Q ss_pred CccccccccccccccccceeeccCceEEEEcccchhh-HhhhhccceEEEEEeceeeeeeeeeecccCCc-cchhhHH--
Q 002962 126 DTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLI-- 201 (862)
Q Consensus 126 ~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~-~~~e~~~-- 201 (862)
.+.+|.|++..+.+... ....++.+++|+||++++. ..+.+.+|.+|||+++.+.++.|++.|+...+ .+.+...
T Consensus 83 ~v~~p~yd~~~~~~~~~-~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~~ 161 (207)
T TIGR00235 83 PIDVPVYDYVNHTRPKE-TVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQ 161 (207)
T ss_pred CEecccceeecCCCCCc-eEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 99999999987776433 3445667899999999965 67888999999999999999999999987654 2333333
Q ss_pred --hhhhhhhhcccCCCcccceeecCCcc
Q 002962 202 --DSIFPLFRKHIEPDLHHAQIRINNRF 227 (862)
Q Consensus 202 --~~~~p~~~k~Iep~~~~ADiII~N~~ 227 (862)
....|.+.++++|.+.+||+||+|+-
T Consensus 162 ~~~~~~~~~~~~i~~~~~~Ad~vi~~~~ 189 (207)
T TIGR00235 162 YRKTVRPMYEQFVEPTKQYADLIIPEGG 189 (207)
T ss_pred HHHhhhhhHHHhCcccccccEEEEcCCC
Confidence 34478899999999999999999864
No 44
>PRK07429 phosphoribulokinase; Provisional
Probab=99.77 E-value=3.1e-19 Score=196.84 Aligned_cols=166 Identities=24% Similarity=0.368 Sum_probs=136.6
Q ss_pred cCCeEEEeecCCCCCCcchHHHHhhhcee---eEEEeeccccccc------CC--CCCCCccchHHHHHhhhhhhcCCCc
Q 002962 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMENYRVGV------DE--GNDLDSIDFDALVQNLQDLTEGKDT 127 (862)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg---~~vI~~D~~~~~~------~~--~~~~~s~d~~~l~~~L~~l~~~~~i 127 (862)
..++++|||+|++||||||+++.|+..++ +.++++|+|+... .. .-.|.+.+++.+.+.+..+..++.+
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I 84 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPI 84 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCce
Confidence 46789999999999999999999999887 7899999986410 01 1246778888999999999999999
Q ss_pred cccccccccccccccceeeccCceEEEEcccchh-hHhhhhccceEEEEEeceeeeeeeeeecccCCc-cchh---hHHh
Q 002962 128 LIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLD---SLID 202 (862)
Q Consensus 128 ~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~-~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~-~~~e---~~~~ 202 (862)
.+|.|++..+...... ...+.++||+||++++ ...+++.+|++|||+++.+.++.|+++|+...+ .+.+ ..++
T Consensus 85 ~~P~yd~~~g~~~~~~--~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~i~ 162 (327)
T PRK07429 85 LKPIYNHETGTFDPPE--YIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAEIE 162 (327)
T ss_pred ecceeecCCCCcCCcE--ecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 9999999988665432 2345689999999854 467889999999999999999999999997655 2334 4445
Q ss_pred hhhhhhhcccCCCcccceeecCCc
Q 002962 203 SIFPLFRKHIEPDLHHAQIRINNR 226 (862)
Q Consensus 203 ~~~p~~~k~Iep~~~~ADiII~N~ 226 (862)
.+.|.+.+||+|.+.+||+||++.
T Consensus 163 ~r~pd~~~yI~P~k~~ADiVI~~~ 186 (327)
T PRK07429 163 AREPDFEAYIRPQRQWADVVIQFL 186 (327)
T ss_pred HhCccHhhhhcccccCCCEEEEcC
Confidence 679999999999999999999987
No 45
>PRK07667 uridine kinase; Provisional
Probab=99.76 E-value=4.3e-19 Score=182.56 Aligned_cols=165 Identities=16% Similarity=0.231 Sum_probs=130.7
Q ss_pred HHhcCCeEEEeecCCCCCCcchHHHHhhhcee-----eEEEeecccccccCC---CCCC-------CccchHHHHHh-hh
Q 002962 56 REKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDE---GNDL-------DSIDFDALVQN-LQ 119 (862)
Q Consensus 56 ~~~~~~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~~---~~~~-------~s~d~~~l~~~-L~ 119 (862)
.+.++.+++|||+|++||||||+|+.|++.++ +.++++|+|+..... .+.+ ..+|++.+.+. +.
T Consensus 11 ~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~ 90 (193)
T PRK07667 11 KKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFR 90 (193)
T ss_pred HhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHH
Confidence 34456679999999999999999999998763 679999999874331 1111 24677777765 46
Q ss_pred hhhcCCCccccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhh
Q 002962 120 DLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDS 199 (862)
Q Consensus 120 ~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~ 199 (862)
.+..++.+.+|.|++..+..... ....++.+++|+||+++++..+.+++|.+|||++|.+.+++|.+.|+. .+.++
T Consensus 91 ~L~~~~~i~~P~~d~~~~~~~~~-~~~~~~~~vvIvEG~~l~~~~~~~~~d~~v~V~~~~~~~~~R~~~r~~---~~~~~ 166 (193)
T PRK07667 91 KLQNETKLTLPFYHDETDTCEMK-KVQIPIVGVIVIEGVFLQRKEWRDFFHYMVYLDCPRETRFLRESEETQ---KNLSK 166 (193)
T ss_pred hhcCCCeEEEeeecccccccccc-ceecCCCCEEEEEehhhhhhhHHhhceEEEEEECCHHHHHHHHhcccH---hHHHH
Confidence 78888899999999988765542 233455689999999999999999999999999999999999999873 35567
Q ss_pred HHhhhhhhhhcccCC--CcccceeecC
Q 002962 200 LIDSIFPLFRKHIEP--DLHHAQIRIN 224 (862)
Q Consensus 200 ~~~~~~p~~~k~Iep--~~~~ADiII~ 224 (862)
..++++|.++.|++- ++.+||+|++
T Consensus 167 ~~~r~~~a~~~y~~~~~~~~~ad~i~~ 193 (193)
T PRK07667 167 FKNRYWKAEDYYLETESPKDRADLVIK 193 (193)
T ss_pred HHHHhHHHHHHHHhhcChHhhCcEEeC
Confidence 777888999998742 4889999974
No 46
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.76 E-value=3e-19 Score=188.57 Aligned_cols=182 Identities=20% Similarity=0.225 Sum_probs=140.2
Q ss_pred HHHHHHhcCCCcEEEeecCCCCCCcchhHhhhcccee-----eeE-Eeeccccccccc----cc-CccCCCcccchhhhc
Q 002962 506 AIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEV-VSLESYFKSEQV----KD-FKYDDFSSLDLSLLS 574 (862)
Q Consensus 506 ~i~~~~~~~~~p~iIgI~G~sGSGKTTla~~L~~~l~-----~~v-islDdfy~~~~~----~~-~n~~~p~t~D~~lL~ 574 (862)
.+..+....+++.+|||+||+|||||||++.|+..+. +.+ +++|+||.+... +. ..++.|.++|.+.+.
T Consensus 22 ~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~ 101 (229)
T PRK09270 22 RLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLA 101 (229)
T ss_pred HHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHH
Confidence 3444445667899999999999999999999998874 345 999999987431 11 135678999999999
Q ss_pred ccchhhcCCc-cccceeeecccccccCceeeeecccceeEEEcceeccc-----Hhhhhccceeeeeecccchheeheee
Q 002962 575 KNISDIRNGR-RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-----PEIRKSLDLWIAVVGGVHSHLISRVQ 648 (862)
Q Consensus 575 ~~L~~L~~g~-~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~-----~~l~~~~D~~I~v~~~~d~rl~Rri~ 648 (862)
+.+..++.|. .+.+|.||+..+..... ......+.+++|+||.+++. +.+.+.+|..||++++.+.++.|.+.
T Consensus 102 ~~l~~l~~~~~~i~~P~yD~~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~ 180 (229)
T PRK09270 102 ALLRRLRAGDDEVYWPVFDRSLEDPVAD-AIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVA 180 (229)
T ss_pred HHHHHHHcCCCceecccCCcccCCCCCC-ceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHH
Confidence 9999999987 89999999998775542 22222346899999999875 36778999999999999999999998
Q ss_pred cccccccccccc-c-ceehhhhhhhhhcccccccccccccccCC
Q 002962 649 RDKSRMGCFMSQ-N-DIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (862)
Q Consensus 649 Rd~~~rg~~~~~-~-~~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (862)
|+. .+|.+.+. . .+.....|.+ +||.+.+..||+||+|+-
T Consensus 181 R~~-~~g~s~~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~ 222 (229)
T PRK09270 181 RKL-AGGLSPEAAEAFVLRNDGPNA-RLVLETSRPADLVLEMTA 222 (229)
T ss_pred HHH-hcCCCHHHHHHHHHhcChHHH-HHHHhcCCCCCEEEEecC
Confidence 864 45655443 2 2223345655 688999999999999864
No 47
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.74 E-value=1.1e-18 Score=177.64 Aligned_cols=148 Identities=21% Similarity=0.280 Sum_probs=116.9
Q ss_pred EEeecCCCCCCcchHHHHhhhce-eeEEEeeccccccc----------CCCCCCCccchHHHHHhhhhhhcCCCcccccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVGV----------DEGNDLDSIDFDALVQNLQDLTEGKDTLIPMF 132 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L-g~~vI~~D~~~~~~----------~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~ 132 (862)
+|||+|++||||||+|+.|++.+ ++.+|++|+||+.. .+++.|+++|++++.+.|..++.++.+..+.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~~~ 80 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLR 80 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCccc
Confidence 58999999999999999999998 69999999998742 35677999999999999999999886555544
Q ss_pred cccccccc-------------ccceeeccCceEEEEcccchhh-HhhhhccceEEEEEeceeeeeeeeeecccCCc----
Q 002962 133 DYQQKNRI-------------GSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS---- 194 (862)
Q Consensus 133 ~~~~~~~~-------------~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~---- 194 (862)
+....... .......++.++||+||.++++ +.+++++|++|||++|.+++++|+++|+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~~~~~~~~ 160 (187)
T cd02024 81 SHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTGYVTLEGF 160 (187)
T ss_pred CccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCCccccCcc
Confidence 44332211 1122334567799999999988 78999999999999999999999999986551
Q ss_pred --cchhhHHhhhhhhhhcc
Q 002962 195 --CSLDSLIDSIFPLFRKH 211 (862)
Q Consensus 195 --~~~e~~~~~~~p~~~k~ 211 (862)
..+..+.+.+||+|.++
T Consensus 161 w~Dp~~yf~~~v~p~y~~~ 179 (187)
T cd02024 161 WPDPPGYFDGHVWPMYLKH 179 (187)
T ss_pred cCCCCcccccccchhHHHH
Confidence 24444455679998873
No 48
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.74 E-value=1.3e-18 Score=187.84 Aligned_cols=161 Identities=24% Similarity=0.379 Sum_probs=131.5
Q ss_pred EEeecCCCCCCcchHHHHhhhce---eeEEEeeccccccc------C--CCCCCCccchHHHHHhhhhhhcCCCcccccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISMENYRVGV------D--EGNDLDSIDFDALVQNLQDLTEGKDTLIPMF 132 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L---g~~vI~~D~~~~~~------~--~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~ 132 (862)
+|||+|++||||||+++.|+..+ ++.++++|+|++.. . ....|++.+++.+.+.+..++.++.+.+|.|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence 58999999999999999999877 57899999997521 0 1123667778888999999999999999999
Q ss_pred ccccccccccceeeccCceEEEEcccchhh-HhhhhccceEEEEEeceeeeeeeeeecccCCc-cchhhHH---hhhhhh
Q 002962 133 DYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLI---DSIFPL 207 (862)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~-~~~e~~~---~~~~p~ 207 (862)
++..+...... ...+.++||+||++++. ..+++++|++|||+++.+.++.|+++|+...+ .+.++++ +.+.|.
T Consensus 81 ~~~~~~~~~~~--~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~r~~~ 158 (273)
T cd02026 81 NHVTGLIDPPE--LIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEARKPD 158 (273)
T ss_pred cccCCCcCCcE--EcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHhhchh
Confidence 99887654322 23456899999999764 68999999999999999999999999987665 3444444 456899
Q ss_pred hhcccCCCcccceeecCCc
Q 002962 208 FRKHIEPDLHHAQIRINNR 226 (862)
Q Consensus 208 ~~k~Iep~~~~ADiII~N~ 226 (862)
+.+||+|.+.+||+||.+.
T Consensus 159 ~~~~I~P~~~~ADvVI~~~ 177 (273)
T cd02026 159 FEAYIDPQKQYADVVIQVL 177 (273)
T ss_pred HHHHhccccccCcEEEEcc
Confidence 9999999999999999776
No 49
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.73 E-value=3.5e-18 Score=180.44 Aligned_cols=182 Identities=20% Similarity=0.342 Sum_probs=142.9
Q ss_pred ceehhhHHHHHHHHhcCCeEEEeecCCCCCCcchHHHHhhhcee-----eEE-Eeecccccc--------c-CCCCCCCc
Q 002962 44 GYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTL-ISMENYRVG--------V-DEGNDLDS 108 (862)
Q Consensus 44 ~y~~l~~~i~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~v-I~~D~~~~~--------~-~~~~~~~s 108 (862)
.+.+|++.+..+.....++.+|||+|++|||||||++.|+..+. +.+ +++|+|+.. + ...+.+++
T Consensus 15 ~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~ 94 (229)
T PRK09270 15 VHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPET 94 (229)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCC
Confidence 45567777777766667899999999999999999999998774 345 999998753 1 23457889
Q ss_pred cchHHHHHhhhhhhcCC-CccccccccccccccccceeeccCceEEEEcccchhh-----HhhhhccceEEEEEeceeee
Q 002962 109 IDFDALVQNLQDLTEGK-DTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-----ARLRSLLDIRVAVVGGVHFS 182 (862)
Q Consensus 109 ~d~~~l~~~L~~l~~~~-~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-----~~l~~~~D~~I~Vda~~~~~ 182 (862)
+|...+.+.+..+..+. .+.+|.|++..+..........+..+++|+||.+++. ..+.+.+|++|||+++.+.+
T Consensus 95 ~d~~~~~~~l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~ 174 (229)
T PRK09270 95 FDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVL 174 (229)
T ss_pred CCHHHHHHHHHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHH
Confidence 99999999999999887 8999999998877665433333456799999999975 36778999999999999999
Q ss_pred eeeeeecccCCccchh---hHHh-hhhhhhhcccCCCcccceeecCCc
Q 002962 183 LISKVQYDIGDSCSLD---SLID-SIFPLFRKHIEPDLHHAQIRINNR 226 (862)
Q Consensus 183 l~R~i~RD~~~~~~~e---~~~~-~~~p~~~k~Iep~~~~ADiII~N~ 226 (862)
++|...|+.....+.+ +.+. +++|.+ .+++|.+++||+||.|+
T Consensus 175 ~~R~~~R~~~~g~s~~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~ 221 (229)
T PRK09270 175 RERLVARKLAGGLSPEAAEAFVLRNDGPNA-RLVLETSRPADLVLEMT 221 (229)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcChHHH-HHHHhcCCCCCEEEEec
Confidence 9999999643333333 3333 356666 57899999999999998
No 50
>PRK06547 hypothetical protein; Provisional
Probab=99.70 E-value=2.7e-17 Score=165.93 Aligned_cols=153 Identities=22% Similarity=0.228 Sum_probs=121.9
Q ss_pred cCCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCcccccccccccc
Q 002962 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (862)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~ 138 (862)
+..+.+|+|+|++||||||+|+.|++.+++.++++|+||.++.... .+...+.+.+.. .|+...++ |++..+.
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~~----~~~~~l~~~~l~--~g~~~~~~-yd~~~~~ 84 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGLA----AASEHVAEAVLD--EGRPGRWR-WDWANNR 84 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccccCC----hHHHHHHHHHHh--CCCCceec-CCCCCCC
Confidence 5778999999999999999999999999999999999997654321 133444554444 56666667 8887665
Q ss_pred ccccceeeccCceEEEEcccchhhHhhhhccc-----eEEEEEeceeeeeeeeeecccCCccchhhHHhhhhhhhhccc-
Q 002962 139 RIGSKVIKGASSGVVIVDGTYALDARLRSLLD-----IRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHI- 212 (862)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D-----~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~~~~p~~~k~I- 212 (862)
.... ....+.+++|+||.+++.+.+++.+| +.|||++|.+.+++|+++||.. ....+++|.+.++.|+
T Consensus 85 ~~~~--~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~----~~~~~~~w~~~e~~~~~ 158 (172)
T PRK06547 85 PGDW--VSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARDPD----YAPHWEMWAAQEERHFA 158 (172)
T ss_pred CCCc--EEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCch----hhHHHHHHHHHHHHHHh
Confidence 4332 23345578999999999888889999 9999999999999999999943 5667788999999998
Q ss_pred -CCCcccceeecC
Q 002962 213 -EPDLHHAQIRIN 224 (862)
Q Consensus 213 -ep~~~~ADiII~ 224 (862)
.+++.+||+|+.
T Consensus 159 ~~~~~~~ad~~~~ 171 (172)
T PRK06547 159 RYDPRDVADWLGS 171 (172)
T ss_pred cCCChhccEEEec
Confidence 577899999874
No 51
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.70 E-value=1.3e-18 Score=176.41 Aligned_cols=155 Identities=21% Similarity=0.235 Sum_probs=116.9
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCC-----------------CCccchHHHHHhhhhh----
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGND-----------------LDSIDFDALVQNLQDL---- 121 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~-----------------~~s~d~~~l~~~L~~l---- 121 (862)
++|||||++||||||+++.|++ +|++++++|.+.+.+...+. -+.+|...|.+.++.-
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 5799999999999999999988 99999999998776554332 2567888877766532
Q ss_pred hcCCCccccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhhHH
Q 002962 122 TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLI 201 (862)
Q Consensus 122 ~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~ 201 (862)
..-+.+.||.+.......... .....++++|.+++++..+...||.+|+|++|.+++++|.++||.........++
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~----~~~~~~~v~e~pLL~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~~~~~~~~~~ri 155 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKR----NKSEKVVVVEIPLLFESGLEKLCDEVIVVYAPEEIRIKRLMERDGLSEEEAEARI 155 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----CHSTSEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHHHTSTHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHh----ccCCCEEEEEcchhhhhhHhhhhceEEEEECCHHHHHHHHHhhCCCcHHHHHHHH
Confidence 223456777766655544322 1222799999999999999999999999999999999999999987777888888
Q ss_pred hhhhhhhhcccCCCcccceeecCCcc
Q 002962 202 DSIFPLFRKHIEPDLHHAQIRINNRF 227 (862)
Q Consensus 202 ~~~~p~~~k~Iep~~~~ADiII~N~~ 227 (862)
+.|+|..++ ++.||+||+|+.
T Consensus 156 ~~Q~~~~~k-----~~~ad~vI~N~g 176 (180)
T PF01121_consen 156 ASQMPDEEK-----RKRADFVIDNNG 176 (180)
T ss_dssp HTS--HHHH-----HHH-SEEEE-SS
T ss_pred HhCCCHHHH-----HHhCCEEEECCC
Confidence 999999998 899999999983
No 52
>PRK06547 hypothetical protein; Provisional
Probab=99.69 E-value=1.7e-17 Score=167.46 Aligned_cols=153 Identities=21% Similarity=0.174 Sum_probs=118.6
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceeeec
Q 002962 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 593 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~ 593 (862)
.+.+.+|+|+|++||||||+|+.|++.+++.++++|+||.+.. +. +.+...+.+.+.. .|++...| ||+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~-------~~-~~~~~~l~~~~l~--~g~~~~~~-yd~ 80 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWH-------GL-AAASEHVAEAVLD--EGRPGRWR-WDW 80 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccc-------cC-ChHHHHHHHHHHh--CCCCceec-CCC
Confidence 4679999999999999999999999999999999999997421 10 1133445554444 67777778 999
Q ss_pred ccccccCceeeeecccceeEEEcceecccHhhhhccc-----eeeeeecccchheeheeecccccccccccccceehhhh
Q 002962 594 ETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLD-----LWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVF 668 (862)
Q Consensus 594 ~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D-----~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~ 668 (862)
..+.+.. +....+.++||+||.+++++.+++.+| ++||+++|.++|+.|++.||.. ...++..+.
T Consensus 81 ~~~~~~~---~~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~-------~~~~~~~w~ 150 (172)
T PRK06547 81 ANNRPGD---WVSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARDPD-------YAPHWEMWA 150 (172)
T ss_pred CCCCCCC---cEEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCch-------hhHHHHHHH
Confidence 9776542 223345689999999999988999999 9999999999999999999954 123555677
Q ss_pred hhhhhcccc--cccccccccc
Q 002962 669 PMFQQHIEP--HLVHAHLKIR 687 (862)
Q Consensus 669 p~~~~~I~p--~~~~ADivI~ 687 (862)
|.++.|+.. .+.+||+++.
T Consensus 151 ~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 151 AQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred HHHHHHHhcCCChhccEEEec
Confidence 888888763 3578898763
No 53
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=99.67 E-value=2e-17 Score=189.76 Aligned_cols=176 Identities=24% Similarity=0.417 Sum_probs=156.0
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhcccee----------eeEEeecccccc--------cccccCccCCCcccchhhhcc
Q 002962 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG----------CEVVSLESYFKS--------EQVKDFKYDDFSSLDLSLLSK 575 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~----------~~vislDdfy~~--------~~~~~~n~~~p~t~D~~lL~~ 575 (862)
...|++||+.|+++|||||++..+...++ +..+++|.||+. .+.+.++|++|+++|.+++..
T Consensus 41 ~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~pda~~~~l~~~ 120 (473)
T KOG4203|consen 41 GKEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDHPDAFDFELLYL 120 (473)
T ss_pred CcceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhccccccCCCCcchhhHHH
Confidence 35799999999999999999998887775 457788889986 123468999999999999999
Q ss_pred cchhhcCCccccceeeecccccccCceeeeecccceeEEEcceeccc-Hhhhhccceeeeeecccchheeheeecccccc
Q 002962 576 NISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM 654 (862)
Q Consensus 576 ~L~~L~~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~r 654 (862)
.++.+++|.++.+|.||+.++.+.+. .+....|.+++|+||+++++ .+.+++++.++|++++.+.++.||+.||+.++
T Consensus 121 ~~~~~~kg~~v~ip~y~~~~~~~~~~-~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r~~~~~ 199 (473)
T KOG4203|consen 121 TLKNLKKGKAVEIPVYDFVTHSRDEE-KTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILRDIVER 199 (473)
T ss_pred HHhcccccceeeceeeeeecccCCCC-ceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhcchhhh
Confidence 99999999999999999999999753 34455788999999999998 78999999999999999999999999999999
Q ss_pred cccccc--cceehhhhhhhhhcccccccccccccccCC
Q 002962 655 GCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (862)
Q Consensus 655 g~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (862)
|+.++. .+|..++.|.|..||+|.+..||++|+...
T Consensus 200 g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~ 237 (473)
T KOG4203|consen 200 GRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRGG 237 (473)
T ss_pred cccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeeccc
Confidence 999886 678889999999999999999999997543
No 54
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.64 E-value=4e-17 Score=168.47 Aligned_cols=158 Identities=14% Similarity=0.119 Sum_probs=124.3
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCC---------------CCCccchHHHHHhhhhh---
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN---------------DLDSIDFDALVQNLQDL--- 121 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~---------------~~~s~d~~~l~~~L~~l--- 121 (862)
..|++|||||++||||||+++.|++.+|+.++++|.+.+.+.... ..+.+|...|.+.++.-
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~ 83 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEA 83 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHH
Confidence 346899999999999999999999889999999999865432210 02567888877776642
Q ss_pred -hcCCCccccccccccccccccceeeccCceEEEEcccchhhHhh--hhccceEEEEEeceeeeeeeeeecccCCccchh
Q 002962 122 -TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARL--RSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLD 198 (862)
Q Consensus 122 -~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l--~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e 198 (862)
..-+.+.||.+.......... ....++++|.+++++... ...||.+|+|+||.+.+++|.+.||...+....
T Consensus 84 ~~~Le~i~HP~V~~~~~~~~~~-----~~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s~~~a~ 158 (204)
T PRK14733 84 KKWLEDYLHPVINKEIKKQVKE-----SDTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDGKNRQQAV 158 (204)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-----cCCCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHH
Confidence 223457778766655443322 123589999999999764 578999999999999999999999987777778
Q ss_pred hHHhhhhhhhhcccCCCcccceeecCCcc
Q 002962 199 SLIDSIFPLFRKHIEPDLHHAQIRINNRF 227 (862)
Q Consensus 199 ~~~~~~~p~~~k~Iep~~~~ADiII~N~~ 227 (862)
.+++.|+|..++ +++||+||+|+.
T Consensus 159 ~ri~~Q~~~eek-----~~~aD~VI~N~g 182 (204)
T PRK14733 159 AFINLQISDKER-----EKIADFVIDNTE 182 (204)
T ss_pred HHHHhCCCHHHH-----HHhCCEEEECcC
Confidence 888899999888 899999999995
No 55
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.64 E-value=2.5e-17 Score=167.47 Aligned_cols=154 Identities=20% Similarity=0.240 Sum_probs=118.4
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCC-----------------CCCccchHHHHHhhhh----hh
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQD----LT 122 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~s~d~~~l~~~L~~----l~ 122 (862)
+|||+|++||||||+++.|++ +|+.++++|.+.+.....+ ..+.+|...|.+.++. +.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 589999999999999999998 8999999999876543221 1256788878777664 23
Q ss_pred cCCCccccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhhHHh
Q 002962 123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID 202 (862)
Q Consensus 123 ~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~ 202 (862)
..+.+.||.+.......... .+...++|+|++++++..+...||.+|+|++|.+.+++|.+.||.........+++
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~----~~~~~~vive~plL~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd~~s~~~~~~r~~ 155 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAE----ARKEKVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIERLMKRDGLSEEEAEARIA 155 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHH----ccCCCEEEEEehHhhcCCcHHhCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33567788776665544322 12236899999999998888999999999999999999999998665555556666
Q ss_pred hhhhhhhcccCCCcccceeecCCcc
Q 002962 203 SIFPLFRKHIEPDLHHAQIRINNRF 227 (862)
Q Consensus 203 ~~~p~~~k~Iep~~~~ADiII~N~~ 227 (862)
.|++...+ +..||+||.|+.
T Consensus 156 ~Q~~~~~~-----~~~aD~vI~N~~ 175 (179)
T cd02022 156 SQMPLEEK-----RARADFVIDNSG 175 (179)
T ss_pred hcCCHHHH-----HHhCCEEEECcC
Confidence 66665543 789999999983
No 56
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.64 E-value=3.8e-17 Score=173.02 Aligned_cols=160 Identities=16% Similarity=0.125 Sum_probs=119.7
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCC-----------------CCCccchHHHHHhhhhh---
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQDL--- 121 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~s~d~~~l~~~L~~l--- 121 (862)
|++|||||++||||||+++.|++.+|+++||+|.+.+.+.+.+ ..+.+|...|.+.++.-
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~ 80 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQA 80 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHH
Confidence 5789999999999999999999878999999999866543322 12678888888876643
Q ss_pred -hcCCCcccccccccccccccc-------ceeeccCceEEEEcccchhhHhh-hhccceEEEEEeceeeeeeeeeecccC
Q 002962 122 -TEGKDTLIPMFDYQQKNRIGS-------KVIKGASSGVVIVDGTYALDARL-RSLLDIRVAVVGGVHFSLISKVQYDIG 192 (862)
Q Consensus 122 -~~~~~i~~p~~~~~~~~~~~~-------~~~~~~~~~vVIvEG~~l~~~~l-~~~~D~~I~Vda~~~~~l~R~i~RD~~ 192 (862)
..-+.+.||.+.......... .........++|+|.+++++..+ ...||.+|+|++|.+.+++|.+.|+..
T Consensus 81 ~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R~g~ 160 (244)
T PTZ00451 81 RRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRKRNGF 160 (244)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcCCeEEEEECCHHHHHHHHHHcCCC
Confidence 333457777655443322210 00111223589999999999875 468899999999999999999999865
Q ss_pred CccchhhHHhhhhhhhhcccCCCcccceeecCCc
Q 002962 193 DSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNR 226 (862)
Q Consensus 193 ~~~~~e~~~~~~~p~~~k~Iep~~~~ADiII~N~ 226 (862)
.....+.+++.|++..++ +.+||+||.|+
T Consensus 161 s~eea~~Ri~~Q~~~~ek-----~~~aD~VI~N~ 189 (244)
T PTZ00451 161 SKEEALQRIGSQMPLEEK-----RRLADYIIEND 189 (244)
T ss_pred CHHHHHHHHHhCCCHHHH-----HHhCCEEEECC
Confidence 656667777777777666 88999999998
No 57
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.63 E-value=7.7e-17 Score=160.85 Aligned_cols=159 Identities=18% Similarity=0.192 Sum_probs=130.4
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCC-----------------CccchHHHHHhhhhhh--
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDL-----------------DSIDFDALVQNLQDLT-- 122 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~-----------------~s~d~~~l~~~L~~l~-- 122 (862)
|++||+||++||||||+++.|. .+|+++||+|.+.+....++.| +.+|++.|.+.++.-.
T Consensus 1 M~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~ 79 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK 79 (225)
T ss_pred CeEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHH
Confidence 6899999999999999999997 6999999999998876665543 4567777766655322
Q ss_pred --cCCCccccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhhH
Q 002962 123 --EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (862)
Q Consensus 123 --~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~ 200 (862)
.-+.+.+|.+.....+.... .-....+++|+|.+++|+..+.+++-.+|.|.||.+++++|.++||...+.+++.+
T Consensus 80 r~~Ln~IthP~Ir~em~ke~~~--~~l~G~r~ivlDiPLLFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~dAe~R 157 (225)
T KOG3220|consen 80 RQALNKITHPAIRKEMFKEILK--LLLRGYRVIVLDIPLLFEAKLLKICHKTVVVTCDEELQLERLVERDELSEEDAENR 157 (225)
T ss_pred HHHHHhcccHHHHHHHHHHHHH--HHhcCCeEEEEechHHHHHhHHhheeeEEEEEECcHHHHHHHHHhccccHHHHHHH
Confidence 23457778777665554432 22356789999999999999999999999999999999999999997777888899
Q ss_pred HhhhhhhhhcccCCCcccceeecCCccc
Q 002962 201 IDSIFPLFRKHIEPDLHHAQIRINNRFV 228 (862)
Q Consensus 201 ~~~~~p~~~k~Iep~~~~ADiII~N~~~ 228 (862)
.+.|+|..++ ...||+||+||+.
T Consensus 158 l~sQmp~~~k-----~~~a~~Vi~Nng~ 180 (225)
T KOG3220|consen 158 LQSQMPLEKK-----CELADVVIDNNGS 180 (225)
T ss_pred HHhcCCHHHH-----HHhhheeecCCCC
Confidence 9999999998 8999999999964
No 58
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.62 E-value=4.6e-17 Score=167.71 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=116.3
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCC-----------------CCC-ccchHHHHHhhhhhh--
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLD-SIDFDALVQNLQDLT-- 122 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~-s~d~~~l~~~L~~l~-- 122 (862)
.+|||+|++||||||+|+.|++.+|+.++|+|.+.+.+...+ ..+ .+|...|.+.++.-.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 479999999999999999999988999999999866543321 124 577777776655322
Q ss_pred --cCCCccccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhhH
Q 002962 123 --EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (862)
Q Consensus 123 --~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~ 200 (862)
.-+.+.||............ ....+++++|.+++++..+...||.+|+|++|.+++++|.++|+.........+
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~----~~~~~~vv~e~pll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~g~s~e~~~~r 157 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQ----LKSNPIVVLVIPLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRDGLTEEEAEAR 157 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHh----cCCCCEEEEEeHHhcCcchHhCCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 12345666654444333211 123468999999999999999999999999999999999999986555555566
Q ss_pred HhhhhhhhhcccCCCcccceeecCCcc
Q 002962 201 IDSIFPLFRKHIEPDLHHAQIRINNRF 227 (862)
Q Consensus 201 ~~~~~p~~~k~Iep~~~~ADiII~N~~ 227 (862)
++.+++...+ +..||+||+|+.
T Consensus 158 i~~Q~~~~~k-----~~~aD~vI~N~g 179 (195)
T PRK14730 158 INAQWPLEEK-----VKLADVVLDNSG 179 (195)
T ss_pred HHhCCCHHHH-----HhhCCEEEECCC
Confidence 6666765544 789999999984
No 59
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.61 E-value=9.2e-17 Score=165.40 Aligned_cols=156 Identities=22% Similarity=0.228 Sum_probs=117.5
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCC-----------------CCCccchHHHHHhhhhh---
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQDL--- 121 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~s~d~~~l~~~L~~l--- 121 (862)
|.+|||+|++||||||+++.|++ +|+.++++|.+.+.....+ ..+.+|...|.+.++.-
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 80 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA 80 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence 56899999999999999999998 8999999999866443211 12567877777766532
Q ss_pred -hcCCCccccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhhH
Q 002962 122 -TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (862)
Q Consensus 122 -~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~ 200 (862)
..-+.+.||.+.......... .....++|+|++++++..+...||.+|+|++|.+.+++|.+.|+.........+
T Consensus 81 ~~~L~~i~hP~v~~~~~~~~~~----~~~~~~vv~e~pll~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~~~s~e~~~~r 156 (194)
T PRK00081 81 RKKLEAILHPLIREEILEQLQE----AESSPYVVLDIPLLFENGLEKLVDRVLVVDAPPETQLERLMARDGLSEEEAEAI 156 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----cccCCEEEEEehHhhcCCchhhCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 223456677665554433321 112369999999999999999999999999999999999999976555555566
Q ss_pred HhhhhhhhhcccCCCcccceeecCCcc
Q 002962 201 IDSIFPLFRKHIEPDLHHAQIRINNRF 227 (862)
Q Consensus 201 ~~~~~p~~~k~Iep~~~~ADiII~N~~ 227 (862)
++.+++...+ ...||+||+|+.
T Consensus 157 i~~Q~~~~~~-----~~~ad~vI~N~g 178 (194)
T PRK00081 157 IASQMPREEK-----LARADDVIDNNG 178 (194)
T ss_pred HHHhCCHHHH-----HHhCCEEEECCC
Confidence 6667776555 688999999984
No 60
>PLN02422 dephospho-CoA kinase
Probab=99.57 E-value=2.2e-16 Score=165.77 Aligned_cols=158 Identities=18% Similarity=0.105 Sum_probs=120.0
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCC-----------------CCCCccchHHHHHhhhhh---
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG-----------------NDLDSIDFDALVQNLQDL--- 121 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~-----------------~~~~s~d~~~l~~~L~~l--- 121 (862)
|.+|||||++||||||+++.|++ +|+.++|+|.+.+.+... ...+.+|...|.+.++.-
T Consensus 1 M~~igltG~igsGKstv~~~l~~-~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~ 79 (232)
T PLN02422 1 MRVVGLTGGIASGKSTVSNLFKS-SGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSK 79 (232)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-CCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHH
Confidence 35799999999999999999985 899999999986643221 123678888888776632
Q ss_pred -hcCCCccccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhhH
Q 002962 122 -TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (862)
Q Consensus 122 -~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~ 200 (862)
..-+.+.||.+............ ....+++++|.+++++..+.+.||.+|+|++|.+.+++|.++|+.........+
T Consensus 80 ~~~Le~IlHP~V~~~~~~~~~~~~--~~~~~~vv~eipLL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~g~s~eea~~R 157 (232)
T PLN02422 80 RQLLNRLLAPYISSGIFWEILKLW--LKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPETQLERLMARDGLSEEQARNR 157 (232)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH--hcCCCEEEEEehhhhhcchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 22345777876554433221110 122469999999999999999999999999999999999999986655566666
Q ss_pred HhhhhhhhhcccCCCcccceeecCCcc
Q 002962 201 IDSIFPLFRKHIEPDLHHAQIRINNRF 227 (862)
Q Consensus 201 ~~~~~p~~~k~Iep~~~~ADiII~N~~ 227 (862)
++.|+|...+ ++.||+||.|+.
T Consensus 158 i~~Q~~~eek-----~~~AD~VI~N~g 179 (232)
T PLN02422 158 INAQMPLDWK-----RSKADIVIDNSG 179 (232)
T ss_pred HHHcCChhHH-----HhhCCEEEECCC
Confidence 7778887666 789999999994
No 61
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.55 E-value=5e-16 Score=160.66 Aligned_cols=159 Identities=19% Similarity=0.202 Sum_probs=118.2
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCC-----------------CCCCccchHHHHHhhhhh---
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG-----------------NDLDSIDFDALVQNLQDL--- 121 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~-----------------~~~~s~d~~~l~~~L~~l--- 121 (862)
|++|||+|++||||||+++.|+. +|++++++|.+.+.+... ...+.+|...|.+.++.-
T Consensus 1 m~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~ 79 (200)
T PRK14734 1 MLRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQ 79 (200)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHH
Confidence 46899999999999999999987 799999999875532221 123667888777766532
Q ss_pred -hcCCCccccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhhH
Q 002962 122 -TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (862)
Q Consensus 122 -~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~ 200 (862)
..-+.+.||.+........... ......++++|.+++++..+.+.||.+|||++|.+.+++|.+.|+..........
T Consensus 80 ~~~le~i~hP~v~~~~~~~~~~~--~~~~~~~vv~e~plL~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~g~s~e~~~~r 157 (200)
T PRK14734 80 TALLNAITHPRIAEETARRFNEA--RAQGAKVAVYDMPLLVEKGLDRKMDLVVVVDVDVEERVRRLVEKRGLDEDDARRR 157 (200)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHH--HhcCCCEEEEEeeceeEcCccccCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 2234566776654443322110 0123468999999999999989999999999999999999999975555566667
Q ss_pred HhhhhhhhhcccCCCcccceeecCCccc
Q 002962 201 IDSIFPLFRKHIEPDLHHAQIRINNRFV 228 (862)
Q Consensus 201 ~~~~~p~~~k~Iep~~~~ADiII~N~~~ 228 (862)
++.|++.+.+ +..||+||+|+..
T Consensus 158 i~~Q~~~~~k-----~~~ad~vI~N~g~ 180 (200)
T PRK14734 158 IAAQIPDDVR-----LKAADIVVDNNGT 180 (200)
T ss_pred HHhcCCHHHH-----HHhCCEEEECcCC
Confidence 7778888776 6899999999843
No 62
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.55 E-value=5e-16 Score=160.04 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=115.6
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCC-----------------CCCccchHHHHHhhhhh----h
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQDL----T 122 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~s~d~~~l~~~L~~l----~ 122 (862)
+|||+|++||||||+++.|++ +|+.++++|.+.+.+...+ ..+.+|...|.+.++.- .
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 489999999999999999976 6999999999866443321 12567888887776632 2
Q ss_pred cCCCccccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhhHHh
Q 002962 123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID 202 (862)
Q Consensus 123 ~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~ 202 (862)
.-+.+.||.+.......... .....++|+|.+++++..+...||.+|||++|.+.+++|.++|+.........+++
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~----~~~~~~vi~e~pLL~E~~~~~~~D~vi~V~a~~e~r~~RL~~R~g~s~e~a~~ri~ 155 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQT----TAEGKLVIWEVPLLFETDAYTLCDATVTVDSDPEESILRTISRDGMKKEDVLARIA 155 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHH----HhcCCcEEEEeeeeeEcCchhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 23457777766544333211 11235899999999999888999999999999999999999998665555555566
Q ss_pred hhhhhhhcccCCCcccceeecCCcc
Q 002962 203 SIFPLFRKHIEPDLHHAQIRINNRF 227 (862)
Q Consensus 203 ~~~p~~~k~Iep~~~~ADiII~N~~ 227 (862)
.++|..++ +..||+||.|+.
T Consensus 156 ~Q~~~~~k-----~~~aD~vI~N~~ 175 (196)
T PRK14732 156 SQLPITEK-----LKRADYIVRNDG 175 (196)
T ss_pred HcCCHHHH-----HHhCCEEEECCC
Confidence 66665544 889999999985
No 63
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.54 E-value=8.9e-16 Score=158.05 Aligned_cols=156 Identities=22% Similarity=0.240 Sum_probs=116.4
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCC-----------------CCccchHHHHHhhhh----
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGND-----------------LDSIDFDALVQNLQD---- 120 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~-----------------~~s~d~~~l~~~L~~---- 120 (862)
|.+|||||++||||||+|+.+++ +|++++++|++.+....++. -+.+|...|.+.++.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 68999999999999999999999 99999999998774333221 134555555554442
Q ss_pred hhcCCCccccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhhH
Q 002962 121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (862)
Q Consensus 121 l~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~ 200 (862)
...-+.+.+|....... ... .....+++++|-+++++......||.+|+|+||+++|++|.++|+..+....+..
T Consensus 81 ~~~Le~i~hPli~~~~~-~~~----~~~~~~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~~~~~ 155 (201)
T COG0237 81 RLKLEKILHPLIRAEIK-VVI----DGARSPYVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEEDAEAR 155 (201)
T ss_pred HHHHHHhhhHHHHHHHH-HHH----HHhhCCceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHH
Confidence 11123455665544332 111 1112238999999999987777799999999999999999999996666677778
Q ss_pred HhhhhhhhhcccCCCcccceeecCCccc
Q 002962 201 IDSIFPLFRKHIEPDLHHAQIRINNRFV 228 (862)
Q Consensus 201 ~~~~~p~~~k~Iep~~~~ADiII~N~~~ 228 (862)
...+.+..++ ...||+|++|+..
T Consensus 156 ~~~Q~~~~ek-----~~~ad~vi~n~~~ 178 (201)
T COG0237 156 LASQRDLEEK-----LALADVVIDNDGS 178 (201)
T ss_pred HHhcCCHHHH-----HhhcCChhhcCCC
Confidence 8888888888 7899999999964
No 64
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.51 E-value=2.5e-15 Score=156.41 Aligned_cols=160 Identities=18% Similarity=0.228 Sum_probs=112.9
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCC-------------------CCC--ccchHHHHHhh
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-------------------DLD--SIDFDALVQNL 118 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-------------------~~~--s~d~~~l~~~L 118 (862)
+.+++|||||++||||||+++.|++ +|+.++++|.+.+.+...+ ..+ .+|...+.+.+
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~v 81 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVV 81 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHH
Confidence 3468899999999999999999987 8999999998755432211 012 26666665554
Q ss_pred hh----hhcCCCccccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCc
Q 002962 119 QD----LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS 194 (862)
Q Consensus 119 ~~----l~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~ 194 (862)
+. +..-+.+.||.+.......... .......++++|++++++......||.+|+|++|.+++++|.++|+....
T Consensus 82 f~~~~~~~~l~~i~hp~i~~~~~~~i~~--~~~~~~~vvv~e~pLL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R~~~s~ 159 (208)
T PRK14731 82 FSDPEKLGALNRLIHPKVFAAFQRAVDR--AARRGKRILVKEAAILFESGGDAGLDFIVVVAADTELRLERAVQRGMGSR 159 (208)
T ss_pred hCCHHHHHHHHHHHCHHHHHHHHHHHHH--HHhcCCCEEEEEeeeeeecCchhcCCeEEEEECCHHHHHHHHHHcCCCCH
Confidence 42 1222346667655433332211 01123468999999999988888999999999999999999999986544
Q ss_pred cchhhHHhhhhhhhhcccCCCcccceeecCCcc
Q 002962 195 CSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRF 227 (862)
Q Consensus 195 ~~~e~~~~~~~p~~~k~Iep~~~~ADiII~N~~ 227 (862)
.....+++.+++...+ .+.||++|+|+.
T Consensus 160 e~~~~Ri~~q~~~~~~-----~~~ad~vI~N~g 187 (208)
T PRK14731 160 EEIRRRIAAQWPQEKL-----IERADYVIYNNG 187 (208)
T ss_pred HHHHHHHHHcCChHHH-----HHhCCEEEECCC
Confidence 5555566666666555 467999999984
No 65
>PF01928 CYTH: CYTH domain; InterPro: IPR008172 The CYTH domain is an ancient enzymatic domain that was present in the Last Universal Common Ancestor and was involved in nucleotide or organic phosphate metabolism []. It is found in a variety of enzymes, including thiamine-triphosphatase and the CyaB-like adenlyl cyclases []. Structurally, this domain consists mainly of antiparallel beta sheets that form a wide barrel with a channel running through it.; GO: 0006796 phosphate-containing compound metabolic process; PDB: 2DC4_B 3SY3_A 3TJ7_D 3N10_A 3N0Z_A 3N0Y_A 2FJT_A 2GFG_A 2EEN_A 2ACA_B ....
Probab=99.47 E-value=2.1e-14 Score=146.30 Aligned_cols=138 Identities=22% Similarity=0.323 Sum_probs=108.8
Q ss_pred ccccCCcccccceeeeeccCCCchhhhhcccceeeeec-ceeEEEeeCceeeecc----ceeeccccceeeec----eec
Q 002962 251 SAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQS-GIRYYLSIGDQRIVDK----NFIIRPKAEFEVGR----MTL 321 (862)
Q Consensus 251 ~~~~~~~~e~d~Y~~~~~r~~~~~~~al~~~~lRiR~~-~~~~~lt~Kg~~~~~~----~~~~k~r~E~ev~v----~~~ 321 (862)
+.+.+...+.|.||+.|.+++...+.+ ||||.. +++..+|||+|...+. .+.+. |.|+|..+ .+.
T Consensus 27 ~~~~~~~~~~d~Y~dt~~~~L~~~~~~-----lRiR~~~~~~~~lTlK~~~~~~~~~e~~~~~~-r~e~e~~i~~~~~~~ 100 (185)
T PF01928_consen 27 AEFPKEEHQTDTYFDTPDRDLRKAGIA-----LRIRRENGDGWYLTLKGPGSDGPREEIEFEVS-REEYEAPISDAEEMR 100 (185)
T ss_dssp EEEEEEEEEEEEEEEETTTHHHHTTSE-----EEEEEETTTEEEEEEEEESSSSSEEEEEEEES-HHCCEEEHSHHHHHH
T ss_pred cccCeEEEEEEEEEeCCChhHHhCCcE-----EEEEeecCCccEEEEEccCccCcccccceeec-chhhhccccchHHHH
Confidence 455667789999999998877655554 599965 6666699998876552 11112 66777665 688
Q ss_pred cchhccccEEEEEEeeceeeEeeCeeEEeeehhccc-cceEEEEEcCC--ccc-------hhhhhhhccccCCc-chHHH
Q 002962 322 GGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTL-DETFMVLRGTN--RKT-------VGAEALRMGINGPW-ITKSY 390 (862)
Q Consensus 322 ~~L~~LGy~~~~~~~K~R~~~~~~~~~v~lD~v~~l-G~~FvEiE~~~--~~~-------v~~~~~~Lgl~~~~-~~~sY 390 (862)
.+|..+||.+.+.++|.|+.|.++++.|++|+++++ |. |+|||... .+. +.+++..||+.... ++++|
T Consensus 101 ~~l~~l~l~~~~~~~k~R~~~~~~~~~v~lD~~~~~~~~-~~EiE~~~~~~~~~~~~~~~i~~~~~~l~~~~~s~~~r~y 179 (185)
T PF01928_consen 101 EILEALGLRPVARIEKKRRSYRLEGVEVELDEVDGLPGT-FLEIEIESEDEEDLKEAAEEILALLNELGISENSKIERSY 179 (185)
T ss_dssp HHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTTEE-EEEEEEEESSHHHHHHHHHHHHHHHHHTTEEGGGBHHSHH
T ss_pred HHHHHhcCceeEEEEEEEEEEEECCEEEEEEEEecceEE-EEEEEEcCCCHhHHHHHHHHHHHHhhhcCCCccchHHHHH
Confidence 999999999999999999999999999999999999 87 99999983 333 34455569998855 99999
Q ss_pred HHHHH
Q 002962 391 LEMVL 395 (862)
Q Consensus 391 lel~l 395 (862)
++|+-
T Consensus 180 ~~l~~ 184 (185)
T PF01928_consen 180 LELLK 184 (185)
T ss_dssp HHHCH
T ss_pred HHhhc
Confidence 99864
No 66
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=99.46 E-value=2e-14 Score=143.78 Aligned_cols=158 Identities=20% Similarity=0.277 Sum_probs=112.9
Q ss_pred CcEEEeecCCCCCCcchhHhhhccce-eeeEEeeccccccccc------ccCccCCCcccchhhhcccchhhcCCccccc
Q 002962 516 LPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQV------KDFKYDDFSSLDLSLLSKNISDIRNGRRTKV 588 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l-~~~vislDdfy~~~~~------~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~ 588 (862)
+.+||||+|.+.|||||||+.|+..| |+.+||.||||++.+. +-.+|+.+++.|++++.+.+.....+... .
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~-~ 81 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHN-A 81 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccc-c
Confidence 46899999999999999999999999 5889999999999543 12468899999999999988776655321 1
Q ss_pred eeeeccccccc-----CceeeeecccceeEEEcceeccc-Hhhhhccceeeeeecccchheeheeecccccccccccccc
Q 002962 589 PIFDLETGARS-----GFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQND 662 (862)
Q Consensus 589 P~yd~~~~~r~-----~~~~~~~~~~~~vVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~ 662 (862)
|.+-...=++. ...-........+||+||.+++. +.+.+.+|..|++.++.+.+.+||-.|- ++.+...-
T Consensus 82 ~~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~~Rt----~y~p~~tg 157 (225)
T KOG3308|consen 82 PEAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRREART----YYPPDDTG 157 (225)
T ss_pred chHhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhcccc----cCCCCCCc
Confidence 11111100110 00001112346799999999986 8899999999999999999988887663 44444433
Q ss_pred eeh-hhhhhhhhccccc
Q 002962 663 IMM-TVFPMFQQHIEPH 678 (862)
Q Consensus 663 ~~~-~v~p~~~~~I~p~ 678 (862)
|.. .++|.|.++....
T Consensus 158 yfd~~~~P~Y~~~~~~~ 174 (225)
T KOG3308|consen 158 YFDPVVWPHYEKNFEEA 174 (225)
T ss_pred cccCccchHHHHHHHHH
Confidence 444 4889888875543
No 67
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.44 E-value=1.3e-14 Score=148.70 Aligned_cols=156 Identities=22% Similarity=0.210 Sum_probs=114.0
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCC-----------------CCCccchHHHHHhhhhhh----
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQDLT---- 122 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~s~d~~~l~~~L~~l~---- 122 (862)
+|||+|++||||||+++.|++..|+.++++|.+.+.+...+ ..+.+|...|.+.++.-.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 48999999999999999999876699999999866433322 124567777766654321
Q ss_pred cCCCccccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhhHHh
Q 002962 123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID 202 (862)
Q Consensus 123 ~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~ 202 (862)
.-+.+.+|.+........... .....++|++.+++++..+...||.+|+|+++.+.++.|.+.|+.........+++
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~---~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~~~s~~~~~~r~~ 157 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQF---QSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQLQLERLMQRDNLTEEEVQKRLA 157 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHh---hcCCCEEEEEchHhhhCCcHHhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 223466676655444433211 11225899999999988888999999999999999999999998555555556666
Q ss_pred hhhhhhhcccCCCcccceeecCCcc
Q 002962 203 SIFPLFRKHIEPDLHHAQIRINNRF 227 (862)
Q Consensus 203 ~~~p~~~k~Iep~~~~ADiII~N~~ 227 (862)
.+.+.+.+ +..||++|+|+.
T Consensus 158 ~q~~~~~~-----~~~ad~vI~N~~ 177 (188)
T TIGR00152 158 SQMDIEER-----LARADDVIDNSA 177 (188)
T ss_pred hcCCHHHH-----HHhCCEEEECCC
Confidence 66666554 788999999983
No 68
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=99.43 E-value=7.2e-14 Score=139.79 Aligned_cols=165 Identities=21% Similarity=0.298 Sum_probs=118.9
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhce-eeEEEeecccccc----------cCCCCCCCccchHHHHHhhhhhhcCCCcc-
Q 002962 61 GIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVG----------VDEGNDLDSIDFDALVQNLQDLTEGKDTL- 128 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L-g~~vI~~D~~~~~----------~~~~~~~~s~d~~~l~~~L~~l~~~~~i~- 128 (862)
+.++|||+|.+.|||||||+.|+..| |+.+||.||||+. ..+++.++++|++++.+.+.....+....
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~ 82 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP 82 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence 45899999999999999999999988 5899999999883 34566789999999998877765553311
Q ss_pred --------ccccccccccccccceeeccCceEEEEcccchhh-HhhhhccceEEEEEeceeeeeeeeeecccCCccchhh
Q 002962 129 --------IPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDS 199 (862)
Q Consensus 129 --------~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~ 199 (862)
...+.+..... ........+||+||.+++. +.+.+.||.+|++..+-+++.+||-.|......+.-.
T Consensus 83 ~ar~~~v~~~~~~~~~~~~----q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~~Rt~y~p~~tgy 158 (225)
T KOG3308|consen 83 EAREHLVSYANFEHYAQQF----QIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRREARTYYPPDDTGY 158 (225)
T ss_pred hHhhhhhhhhHHHHHhhhc----CcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhcccccCCCCCCcc
Confidence 11111111111 1122346699999999998 7888999999999999999988888886543322222
Q ss_pred HHhhhhhhhhcccCCCcccc--eeecCCccch
Q 002962 200 LIDSIFPLFRKHIEPDLHHA--QIRINNRFVS 229 (862)
Q Consensus 200 ~~~~~~p~~~k~Iep~~~~A--DiII~N~~~~ 229 (862)
+..-+||.|.++.+..+.++ |....|...+
T Consensus 159 fd~~~~P~Y~~~~~~~~d~~~h~~~flngdvs 190 (225)
T KOG3308|consen 159 FDPVVWPHYEKNFEEARDRSRHDSLFLNGDVS 190 (225)
T ss_pred ccCccchHHHHHHHHHHhhcccceeeecccch
Confidence 22346899999887666665 6777776443
No 69
>PRK08233 hypothetical protein; Provisional
Probab=99.42 E-value=8.5e-14 Score=140.90 Aligned_cols=150 Identities=19% Similarity=0.286 Sum_probs=104.8
Q ss_pred CcEEEeecCCCCCCcchhHhhhcccee-eeEEeeccccccccccc-Ccc----CCCcccchhhhcccchhhcCCccccce
Q 002962 516 LPVIVGIGGPSGSGKTSLAHKMANIVG-CEVVSLESYFKSEQVKD-FKY----DDFSSLDLSLLSKNISDIRNGRRTKVP 589 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~-~~vislDdfy~~~~~~~-~n~----~~p~t~D~~lL~~~L~~L~~g~~v~~P 589 (862)
++.+|+|+|++||||||+|+.|+..++ +.++++|+|+.+..... ..| .....++++.+.+.+..+.++
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------ 75 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAK------ 75 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcC------
Confidence 368999999999999999999999995 77889999986421100 011 112344555555554443321
Q ss_pred eeecccccccCceeeeecccceeEEEcceecc-cHhhhhccceeeeeecccchheeheeecccccccc-ccc--ccceeh
Q 002962 590 IFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC-FMS--QNDIMM 665 (862)
Q Consensus 590 ~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~-~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~-~~~--~~~~~~ 665 (862)
.+.++||+||.+.. ++.+.+.+|+.||+++|.+.++.|++.|+...... ... ...+..
T Consensus 76 ------------------~~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~ 137 (182)
T PRK08233 76 ------------------SNVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLN 137 (182)
T ss_pred ------------------CCceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 12378999998875 47888999999999999999999999887533211 111 134555
Q ss_pred hhhhhhhhcccccccccccccccC
Q 002962 666 TVFPMFQQHIEPHLVHAHLKIRND 689 (862)
Q Consensus 666 ~v~p~~~~~I~p~~~~ADivI~n~ 689 (862)
.++|.|.+++++....|+++|++.
T Consensus 138 ~~~~~y~~~~~~~~~~~~~vId~~ 161 (182)
T PRK08233 138 YARPLYLEALHTVKPNADIVLDGA 161 (182)
T ss_pred HHHHHHHHHhhcCccCCeEEEcCC
Confidence 678888888777666788888653
No 70
>cd07758 ThTPase Thiamine Triphosphatase. ThTPase is a soluble cytosolic enzyme which converts thiamine triphosphate (ThTP) to thiamine diphosphate. This catalytic activity depends on a divalent metal cofactor, for example Mg++. ThTPase regulates the intracellular concentration of ThTP, maintaining it at a low concentration in vivo. ThTP acts as a messenger in cell signaling in response to cellular stress, and in addition, can phosphorylate proteins in certain tissues. There is another class of membrane-associated enzymes in animal tissues which also convert ThTP to thiamine diphosphate, however they do not belong to this subgroup. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.
Probab=99.42 E-value=1.7e-13 Score=141.08 Aligned_cols=123 Identities=13% Similarity=0.090 Sum_probs=101.7
Q ss_pred cccCCcccccceeeeeccCCCchhhhhcccceeeeecceeEEEeeCceee---eccceeeccccceeeece---------
Q 002962 252 AFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRI---VDKNFIIRPKAEFEVGRM--------- 319 (862)
Q Consensus 252 ~~~~~~~e~d~Y~~~~~r~~~~~~~al~~~~lRiR~~~~~~~lt~Kg~~~---~~~~~~~k~r~E~ev~v~--------- 319 (862)
.......++|.||++|+++++.++.++ |+|+. ..+|++|++.. +... +.++|+++.+.
T Consensus 25 ~~~~~~~~~d~YfDtp~~~l~~~~~~L-----RiR~~--~~~lk~~~~~~~~~~~~~---~~~~E~~~~~~~~~~v~~~~ 94 (196)
T cd07758 25 ELLGRRTFHDTYYDTPDNTLSLNDVWL-----RQRNG--QWELKIPPGGDPPTAGAN---TRYEELTGEAAIAAALRKLL 94 (196)
T ss_pred CCCceEEEeeEEEeCCChhHHhCCcEE-----EEECC--eEEEEecCCCCCCCCCCc---ceEEecccHHHHHHHHHHhc
Confidence 455678899999999999999999987 99963 67788886654 2334 78888888771
Q ss_pred ---------eccchhccccEEEEEEeeceeeEeeC-eeEEeeehhccccceEEEEEcC--C---c-------cchhhhhh
Q 002962 320 ---------TLGGLLDLGYSVVASYKRASTYVVYG-NLSVSFETIDTLDETFMVLRGT--N---R-------KTVGAEAL 377 (862)
Q Consensus 320 ---------~~~~L~~LGy~~~~~~~K~R~~~~~~-~~~v~lD~v~~lG~~FvEiE~~--~---~-------~~v~~~~~ 377 (862)
|..+|..|||.+.++++|.|++|+++ +++|+||+++ +|..|+|||.+ + + +.+.++++
T Consensus 95 ~~~~~~~~~~~~~L~~lgf~~~~~~~k~R~~y~~~~g~~v~LD~~~-~G~~~~EiE~~v~~~~~~~~~~~a~~~i~~~~~ 173 (196)
T cd07758 95 GGALPSAGGLGDELANLGLREFASFVTKRESWKLDGAFRVDLDRTD-FGYSVGEVELLVEEEDNEAEVPAALAKIDELIS 173 (196)
T ss_pred CCCCCcchhHHHHHhhCCCeEEEEEEEEEEEEEcCCCcEEEEeccc-CCcceEEEEEEEecccchhhHHHHHHHHHHHHH
Confidence 23799999999999999999999999 9999999999 77779999986 4 2 55788999
Q ss_pred hccccCCc
Q 002962 378 RMGINGPW 385 (862)
Q Consensus 378 ~Lgl~~~~ 385 (862)
+||+...+
T Consensus 174 ~lg~~~~~ 181 (196)
T cd07758 174 ALMERYLW 181 (196)
T ss_pred HhCCCccc
Confidence 99998743
No 71
>cd07762 CYTH-like_Pase_1 Uncharacterized subgroup 1 of the CYTH-like superfamily. Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup
Probab=99.41 E-value=1.7e-13 Score=139.27 Aligned_cols=119 Identities=14% Similarity=-0.021 Sum_probs=103.6
Q ss_pred CCcccccceeeeeccCCCchhhhhcccceeeeecceeEEEeeCceeeeccceeeccccceeeec----------------
Q 002962 255 GNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---------------- 318 (862)
Q Consensus 255 ~~~~e~d~Y~~~~~r~~~~~~~al~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v---------------- 318 (862)
....|++.||++|+++++.++.++ |||..++++.+|||||.. +.|.|+|+.+
T Consensus 25 ~~~~q~n~Yfdtp~~~l~~~~~aL-----RiR~~~~~~~~TlK~~~~-------~~r~E~e~~l~~~~~~~~~~~~~~~~ 92 (180)
T cd07762 25 DFFKQTNYYFDTPDFALKKKHSAL-----RIREKEGKAELTLKVPQE-------VGLLETNQPLTLEEAEKLIKGGTLPE 92 (180)
T ss_pred CcEEEEEEEEeCCCHHHHhCCcEE-----EEEeeCCeEEEEEeeCCC-------CCCcEEeecCCHHHHHHHhccccCCc
Confidence 346789999999999999999999 999999999999998873 4789999988
Q ss_pred -eeccchhccccEE-----EEEEeeceeeEeeCeeEEeeehhccccceEEEEEcC--Cc----cchhhhhhhccccCCc
Q 002962 319 -MTLGGLLDLGYSV-----VASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--NR----KTVGAEALRMGINGPW 385 (862)
Q Consensus 319 -~~~~~L~~LGy~~-----~~~~~K~R~~~~~~~~~v~lD~v~~lG~~FvEiE~~--~~----~~v~~~~~~Lgl~~~~ 385 (862)
.+..+|..|||.+ ++.++|.|..|.+++..+|||++.++|..++|||.. +. +.+.++++.||+....
T Consensus 93 ~~~~~~L~~lg~~~~~l~~~~~~~t~R~~~~~~~~~l~LD~~~~lg~~d~ElE~e~~~~~~~~~~~~~ll~~~gi~~~~ 171 (180)
T cd07762 93 GEILDKLKELGIDPSELKLFGSLTTIRAEIPYEGGLLVLDHSLYLGITDYELEYEVDDYEAGKKAFLELLKQYNIPYRP 171 (180)
T ss_pred hHHHHHHHHhCCCcccEEEEeeEEEEEEEEEeCCEEEEEeccEeCCCeeEEEEEEeCCHHHHHHHHHHHHHHcCCCccc
Confidence 2678999999985 999999999999999999999999999934999875 22 5678888889887744
No 72
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=99.41 E-value=7.4e-13 Score=134.06 Aligned_cols=129 Identities=17% Similarity=0.270 Sum_probs=112.4
Q ss_pred hhheeeecCCCCCCCccCCCCeEEEEEecceeeEEeeccccCCCeeeccccceeee--hhhhhhhhhccceEEEEEEeee
Q 002962 730 FIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREGNFIIQPKVDFDIS--ISTVAGLLNLGYQAVAYIEASA 807 (862)
Q Consensus 730 y~~~Yl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~f~~~--~~~~~~l~~lg~~~~~~~~~~~ 807 (862)
.-+.|+-.|+-. ....+.|||+|+.+|++.|++..|..++.+.+++.++++|+ ..+...|.+|||+.++.++...
T Consensus 33 q~D~Yfd~p~~~---l~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~~~~~E~e~~v~d~~~~~~iL~~LG~~~~~~v~K~R 109 (174)
T TIGR00318 33 QHDIYFSNPCRD---FASTDEALRIRKLTGEKFVTYKGPKIDNESKTRKEIEFKIEDIENALQILKKLGFKKVYEVIKKR 109 (174)
T ss_pred eEEEeecCCCcc---hhhCCcEEEEEEcCCcEEEEEeCCccCCcceEEEEEEEEECCHHHHHHHHHHCCCeEEEEEEEEE
Confidence 446665555322 13456799999999999999999999999999999999996 7778899999999999999999
Q ss_pred eeeecCeEEEEeeccCCCCCCceEEeccCH---------HHHhhccceeeecCcccceehhccC
Q 002962 808 FIYQDGKILIEVDHLQDAPSPYLQIKGVDK---------EAVAAAGSTLKLDGSYTTKVMSLAL 862 (862)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (862)
.+|..+++.|++|++++|+ +|++|.|... +.+.++|.+|||.+..+++||+|+|
T Consensus 110 ~~~~l~~~~i~lD~v~~lG-~FvEIE~~~~~~~~~~~~~~~i~~~~~~LGl~~~~~~~sY~ell 172 (174)
T TIGR00318 110 RIYQTNELNVSIDDVEGLG-FFLEIEKIINNINDKDLALEEIFEIINQLGIKDNIERRSYLELL 172 (174)
T ss_pred EEEEECCEEEEEEccCCCc-cEEEEEEecCCccchHHHHHHHHHHHHHcCCCcCcccccHHHHh
Confidence 9999999999999999998 7999999764 5789999999999999999999986
No 73
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.40 E-value=3.3e-14 Score=161.54 Aligned_cols=157 Identities=17% Similarity=0.208 Sum_probs=111.6
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCC-----------------CCCccchHHHHHhhhhhh--
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQDLT-- 122 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~s~d~~~l~~~L~~l~-- 122 (862)
|.+|||||++||||||+++.|++ +|+.+||+|.+.+.+...+ ..+.+|...|.+.++.-.
T Consensus 1 m~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~ 79 (395)
T PRK03333 1 MLRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEA 79 (395)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHH
Confidence 46799999999999999999988 8999999999866433221 236788888887766422
Q ss_pred --cCCCccccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhhH
Q 002962 123 --EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (862)
Q Consensus 123 --~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~ 200 (862)
.-+.+.+|.+......... ..+...++++|.+++++..+...||.+|||++|.+.+++|.+.|+..........
T Consensus 80 ~~~le~i~hP~I~~~i~~~i~----~~~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e~ri~Rl~~rRg~s~~~a~~r 155 (395)
T PRK03333 80 RAVLNGIVHPLVGARRAELIA----AAPEDAVVVEDIPLLVESGMAPLFHLVVVVDADVEVRVRRLVEQRGMAEADARAR 155 (395)
T ss_pred HHHHHHhhhHHHHHHHHHHHH----hcCCCCEEEEEeeeeecCCchhhCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHH
Confidence 2234566655433322211 1133457777888888888889999999999999999999888654443344444
Q ss_pred HhhhhhhhhcccCCCcccceeecCCccc
Q 002962 201 IDSIFPLFRKHIEPDLHHAQIRINNRFV 228 (862)
Q Consensus 201 ~~~~~p~~~k~Iep~~~~ADiII~N~~~ 228 (862)
+..+.+...+ ...||++|+|+..
T Consensus 156 i~~Q~~~e~k-----~~~AD~vIdN~~s 178 (395)
T PRK03333 156 IAAQASDEQR-----RAVADVWLDNSGT 178 (395)
T ss_pred HHhcCChHHH-----HHhCCEEEECCCC
Confidence 5555554444 7899999999854
No 74
>PRK08233 hypothetical protein; Provisional
Probab=99.39 E-value=3.5e-13 Score=136.37 Aligned_cols=142 Identities=18% Similarity=0.356 Sum_probs=100.3
Q ss_pred eEEEeecCCCCCCcchHHHHhhhcee-eEEEeecccccccCC---------CCCCCccchHHHHHhhhhhhcCCCccccc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIG-CTLISMENYRVGVDE---------GNDLDSIDFDALVQNLQDLTEGKDTLIPM 131 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg-~~vI~~D~~~~~~~~---------~~~~~s~d~~~l~~~L~~l~~~~~i~~p~ 131 (862)
.++|+|+|++||||||+|+.|++.++ +.+++.|.++..... +...+.++.+.+.+.+..+..+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 75 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAK------- 75 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcC-------
Confidence 48999999999999999999999886 678889988643211 1112334444444444433222
Q ss_pred cccccccccccceeeccCceEEEEcccchhh-HhhhhccceEEEEEeceeeeeeeeeecccCCc--cc----hhhHHhhh
Q 002962 132 FDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS--CS----LDSLIDSI 204 (862)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~--~~----~e~~~~~~ 204 (862)
...++||+||++... +.+...+|++|||++|.+.++.|++.|+.... .. ........
T Consensus 76 ----------------~~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 139 (182)
T PRK08233 76 ----------------SNVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYA 139 (182)
T ss_pred ----------------CCceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 113578999987754 67888899999999999999999998874321 11 22333445
Q ss_pred hhhhhcccCCCcccceeecCCc
Q 002962 205 FPLFRKHIEPDLHHAQIRINNR 226 (862)
Q Consensus 205 ~p~~~k~Iep~~~~ADiII~N~ 226 (862)
.|.|.+++++....|+++|+++
T Consensus 140 ~~~y~~~~~~~~~~~~~vId~~ 161 (182)
T PRK08233 140 RPLYLEALHTVKPNADIVLDGA 161 (182)
T ss_pred HHHHHHHhhcCccCCeEEEcCC
Confidence 7788888877777899999876
No 75
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.39 E-value=1.8e-13 Score=138.89 Aligned_cols=154 Identities=15% Similarity=0.214 Sum_probs=125.8
Q ss_pred ceeEEeccceehhhHHHHHHHHhcCCeEEEeecCCCCCCcchHHHHhhhcee-------------eEEEeecccccc---
Q 002962 36 PVHASFDHGYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-------------CTLISMENYRVG--- 99 (862)
Q Consensus 36 ~~~~s~~~~y~~l~~~i~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~Lg-------------~~vI~~D~~~~~--- 99 (862)
+++.+.++.|...++++. .+....+|++|++|+||||++.++++... +.++.||.|+..
T Consensus 98 ~D~s~~de~y~~~~e~L~-----~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~ 172 (323)
T KOG2702|consen 98 KDHSEDDEFYPVKYEALT-----SNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRC 172 (323)
T ss_pred cCcchhhhhhHHHHHHhc-----ccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHH
Confidence 444455556666666554 45567899999999999999999987442 356999998542
Q ss_pred ----------cCCCCCCCccchHHHHHhhhhhhc--CCCccccccccccccccccceeeccCceEEEEcccchhh-----
Q 002962 100 ----------VDEGNDLDSIDFDALVQNLQDLTE--GKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD----- 162 (862)
Q Consensus 100 ----------~~~~~~~~s~d~~~l~~~L~~l~~--~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~----- 162 (862)
...++.|-+||-..+.+.++.+++ ..+++.|.|++..++++.+.....+..++||+||.|++.
T Consensus 173 LD~f~dP~~AharRGapwTFD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~W 252 (323)
T KOG2702|consen 173 LDLFKDPQTAHARRGAPWTFDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENW 252 (323)
T ss_pred HHhhcChHHHHhhcCCCcccCHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccH
Confidence 234678899999999988888774 457999999999999999988889999999999999986
Q ss_pred HhhhhccceEEEEEeceeeeeeeeeecccCCc
Q 002962 163 ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS 194 (862)
Q Consensus 163 ~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~ 194 (862)
+.+.+.+|.++|++++-+...+|...|.....
T Consensus 253 kdi~k~~d~k~~idV~~~~a~~RVa~RHl~sG 284 (323)
T KOG2702|consen 253 KDIYKTLDDKYKIDVDYEAAEERVAKRHLQSG 284 (323)
T ss_pred HHHHHHhhhheeccccHHHHHHHHHHHhhccc
Confidence 57788899999999999999999988887666
No 76
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.36 E-value=7.8e-13 Score=147.25 Aligned_cols=169 Identities=18% Similarity=0.243 Sum_probs=115.9
Q ss_pred ceehhhHH----HHHHHHhc-----CCeEEEeecCCCCCCcchHHHHhhhcee-----eEEEeecccccccC--------
Q 002962 44 GYYLLVKS----IQELREKK-----GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVD-------- 101 (862)
Q Consensus 44 ~y~~l~~~----i~~~~~~~-----~~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~-------- 101 (862)
.|.++..- |..++.+. .+|++|||+|++|||||||++.|...+. +.+|+.|+||....
T Consensus 185 ~ylPl~~w~~~~i~~h~~~~~~~~~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~ 264 (460)
T PLN03046 185 YYIPVFIWCEDQIAEHRSKFKDGDDIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRER 264 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhh
Confidence 45566553 44444322 2689999999999999999999987662 67899999986211
Q ss_pred --------CCCCCCccchHHHHHhhhhh----hcCCCcccccccccccc----ccccc--eeeccCceEEEEcccchhhH
Q 002962 102 --------EGNDLDSIDFDALVQNLQDL----TEGKDTLIPMFDYQQKN----RIGSK--VIKGASSGVVIVDGTYALDA 163 (862)
Q Consensus 102 --------~~~~~~s~d~~~l~~~L~~l----~~~~~i~~p~~~~~~~~----~~~~~--~~~~~~~~vVIvEG~~l~~~ 163 (862)
.++.|+++|...+.+.|..+ +.|+.+.+|.||+..+. |.... .....+.+|||+||+++...
T Consensus 265 nP~n~LL~~RG~PGTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~ 344 (460)
T PLN03046 265 NPGNALLELRGNAGSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFK 344 (460)
T ss_pred CccchhhcccCCCccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCC
Confidence 23457899998888887777 56788999999999865 43221 22345678999999887651
Q ss_pred --------------------------hhhhccceEEEEEece-eeeeeeeeecccCC------c---cchhhHHhhhhhh
Q 002962 164 --------------------------RLRSLLDIRVAVVGGV-HFSLISKVQYDIGD------S---CSLDSLIDSIFPL 207 (862)
Q Consensus 164 --------------------------~l~~~~D~~I~Vda~~-~~~l~R~i~RD~~~------~---~~~e~~~~~~~p~ 207 (862)
.+...+|.-|.+.++. +...+||.+.+... . ....++++.++|.
T Consensus 345 P~~~~~l~~~D~~l~~VN~~L~~Y~~~w~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV~~FV~~YmPa 424 (460)
T PLN03046 345 PLPNEVVKAVDPQLEVVNKNLEAYYDAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEVMDFVSRYLPA 424 (460)
T ss_pred CCChHHhhccChhHHHHHHHHHHHHHHHHHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhhhH
Confidence 1112355656677664 56677776654321 1 2455667788898
Q ss_pred hhccc
Q 002962 208 FRKHI 212 (862)
Q Consensus 208 ~~k~I 212 (862)
|+.|.
T Consensus 425 Y~~y~ 429 (460)
T PLN03046 425 YKAYL 429 (460)
T ss_pred HHHHH
Confidence 88866
No 77
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.35 E-value=6.4e-14 Score=142.44 Aligned_cols=159 Identities=18% Similarity=0.183 Sum_probs=110.3
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeeccccccccc-------------ccCccCCCcccchhhhcccchh----hc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV-------------KDFKYDDFSSLDLSLLSKNISD----IR 581 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~-------------~~~n~~~p~t~D~~lL~~~L~~----L~ 581 (862)
+|||+|++||||||+++.|++ +|+.++++|++.+..-. +...+...+.+|...|.+.+.. ++
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 589999999999999999999 89999999999875210 0111123467888877775532 44
Q ss_pred CCccccceeeecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeeccccccccccccc
Q 002962 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQN 661 (862)
Q Consensus 582 ~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~ 661 (862)
.-+.+.+|.+......... . .....++|+|+.+++...+...+|..|+|++|.+.++.|.+.||........
T Consensus 80 ~l~~i~hp~i~~~~~~~~~--~---~~~~~~vive~plL~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd~~s~~~~~--- 151 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLA--E---ARKEKVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIERLMKRDGLSEEEAE--- 151 (179)
T ss_pred HHHHHHHHHHHHHHHHHHH--H---ccCCCEEEEEehHhhcCCcHHhCCeEEEEECCHHHHHHHHHHcCCCCHHHHH---
Confidence 4567788876665543321 0 1113699999999999888899999999999999999999999843322111
Q ss_pred ceehhhhhhhhhcccccccccccccccCCC
Q 002962 662 DIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (862)
Q Consensus 662 ~~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (862)
+.+....+. ++....||+||+|+.+
T Consensus 152 ~r~~~Q~~~-----~~~~~~aD~vI~N~~~ 176 (179)
T cd02022 152 ARIASQMPL-----EEKRARADFVIDNSGS 176 (179)
T ss_pred HHHHhcCCH-----HHHHHhCCEEEECcCC
Confidence 111111111 2345789999999754
No 78
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.32 E-value=6.8e-13 Score=134.71 Aligned_cols=139 Identities=19% Similarity=0.236 Sum_probs=113.2
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhcccee-------------eeEEeeccccccccc---------ccCccCCCcccchh
Q 002962 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-------------CEVVSLESYFKSEQV---------KDFKYDDFSSLDLS 571 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~-------------~~vislDdfy~~~~~---------~~~n~~~p~t~D~~ 571 (862)
.+...++|++|++|+||||++..+.++.. +.++.||+|++..+. .....+.|-|||-+
T Consensus 116 ~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~~ 195 (323)
T KOG2702|consen 116 SNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDSN 195 (323)
T ss_pred ccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCHH
Confidence 34577899999999999999999987542 357999999887331 11235678999999
Q ss_pred hhcccchhhc--CCccccceeeecccccccCceeeeecccceeEEEcceeccc-----Hhhhhccceeeeeecccchhee
Q 002962 572 LLSKNISDIR--NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-----PEIRKSLDLWIAVVGGVHSHLI 644 (862)
Q Consensus 572 lL~~~L~~L~--~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~-----~~l~~~~D~~I~v~~~~d~rl~ 644 (862)
++.+.+..|+ .-..+.+|.||+..||..+ +.+.+....+|||+||.|++. ..+.+.+|.+.|++.+.+...+
T Consensus 196 lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~-DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~~ 274 (323)
T KOG2702|consen 196 LFLQLCKILKKTTIPDIYVPSFDHALGDPVP-DDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAEE 274 (323)
T ss_pred HHHHHHHHHhhcCCCceeccccccccCCCCc-cceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHHHH
Confidence 9999998888 4567999999999999886 355556678999999999974 4577889999999999999999
Q ss_pred heeeccccc
Q 002962 645 SRVQRDKSR 653 (862)
Q Consensus 645 Rri~Rd~~~ 653 (862)
|.-.|....
T Consensus 275 RVa~RHl~s 283 (323)
T KOG2702|consen 275 RVAKRHLQS 283 (323)
T ss_pred HHHHHhhcc
Confidence 988888765
No 79
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.28 E-value=1.2e-13 Score=140.36 Aligned_cols=159 Identities=17% Similarity=0.189 Sum_probs=104.3
Q ss_pred EEEeecCCCCCCcchhHhhhccceeeeEEeecccccc----cc---------cccCccCCCcccchhhhcccch----hh
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS----EQ---------VKDFKYDDFSSLDLSLLSKNIS----DI 580 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~----~~---------~~~~n~~~p~t~D~~lL~~~L~----~L 580 (862)
++|||+|+.||||||+++.|++ +|+.++++|...+. .. .+..-++.-|++|...|.+.+- .+
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 4899999999999999999999 89999999988654 11 0111123347888888887652 23
Q ss_pred cCCccccceeeecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeecccccccccccc
Q 002962 581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 660 (862)
Q Consensus 581 ~~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~ 660 (862)
+.-+.+.+|........+.. .....+++++|..++++..+...||..|+|++|.+.++.|.+.||.......
T Consensus 80 ~~L~~iihP~I~~~~~~~~~-----~~~~~~~~v~e~pLL~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~~~~~~~~--- 151 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIK-----RNKSEKVVVVEIPLLFESGLEKLCDEVIVVYAPEEIRIKRLMERDGLSEEEA--- 151 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HCHSTSEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHHHTSTHHHH---
T ss_pred HHHHHHHhHHHHHHHHHHHH-----hccCCCEEEEEcchhhhhhHhhhhceEEEEECCHHHHHHHHHhhCCCcHHHH---
Confidence 44456777775554433321 1111279999999999999999999999999999999999999974432221
Q ss_pred cceehhhhhhhhhcccccccccccccccCC
Q 002962 661 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (862)
Q Consensus 661 ~~~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (862)
.+......|..++ +..||+||+|+.
T Consensus 152 ~~ri~~Q~~~~~k-----~~~ad~vI~N~g 176 (180)
T PF01121_consen 152 EARIASQMPDEEK-----RKRADFVIDNNG 176 (180)
T ss_dssp HHHHHTS--HHHH-----HHH-SEEEE-SS
T ss_pred HHHHHhCCCHHHH-----HHhCCEEEECCC
Confidence 1222223333332 478999999975
No 80
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=99.26 E-value=6e-12 Score=144.94 Aligned_cols=167 Identities=26% Similarity=0.444 Sum_probs=142.9
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhcee----------eEEEeeccccccc------------CCCCCCCccchHHHHHh
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG----------CTLISMENYRVGV------------DEGNDLDSIDFDALVQN 117 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg----------~~vI~~D~~~~~~------------~~~~~~~s~d~~~l~~~ 117 (862)
..+++||+.|+++|||||++..+.+.++ +..++.|.||+.+ ...+.|++++.+.+...
T Consensus 42 ~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~pda~~~~l~~~~ 121 (473)
T KOG4203|consen 42 KEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDHPDAFDFELLYLT 121 (473)
T ss_pred cceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhccccccCCCCcchhhHHHH
Confidence 4689999999999999999988887776 4567778787732 23467899999999999
Q ss_pred hhhhhcCCCccccccccccccccccceeeccCceEEEEcccchhh-HhhhhccceEEEEEeceeeeeeeeeecccCCc-c
Q 002962 118 LQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-C 195 (862)
Q Consensus 118 L~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~-~ 195 (862)
+..++++..+..|.|++..+.+.+.......+.+++++||++.+. ...+++.+.++||+.+.+.++.|++.|+...+ .
T Consensus 122 ~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r~~~~~g~ 201 (473)
T KOG4203|consen 122 LKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILRDIVERGR 201 (473)
T ss_pred HhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhcchhhhcc
Confidence 999999999999999999999977766666777889999999987 68889999999999999999999999998766 3
Q ss_pred chhhHH----hhhhhhhhcccCCCcccceeecCCc
Q 002962 196 SLDSLI----DSIFPLFRKHIEPDLHHAQIRINNR 226 (862)
Q Consensus 196 ~~e~~~----~~~~p~~~k~Iep~~~~ADiII~N~ 226 (862)
+++... ....|.+..+|+|+++.||++|+..
T Consensus 202 ~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~ 236 (473)
T KOG4203|consen 202 DLESILTQYSTFVKPAFEEFILPTKKYADVIIPRG 236 (473)
T ss_pred cHHHHHHHHHhhcCchHHHHhhHHHHhhhheeecc
Confidence 444444 4568999999999999999999765
No 81
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.25 E-value=5.4e-13 Score=137.91 Aligned_cols=162 Identities=14% Similarity=0.077 Sum_probs=110.7
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhccceeeeEEeeccccccc-cc--------ccC---ccCCCcccchhhhcccch---
Q 002962 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE-QV--------KDF---KYDDFSSLDLSLLSKNIS--- 578 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~-~~--------~~~---n~~~p~t~D~~lL~~~L~--- 578 (862)
...|++|||+|+.||||||+++.|++.+|+.+++.|...+.- +. ..+ -++ -+.+|...|.+.+.
T Consensus 3 ~~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~-~g~idR~~L~~~vF~d~ 81 (204)
T PRK14733 3 FINTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVM-NKQINRAMLRAIITESK 81 (204)
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhcc-CCCcCHHHHHHHHhCCH
Confidence 346899999999999999999999988899999999886652 10 011 112 36788888877552
Q ss_pred -hhcCCccccceeeecccccccCceeeeecccceeEEEcceecccHhh--hhccceeeeeecccchheeheeeccccccc
Q 002962 579 -DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEI--RKSLDLWIAVVGGVHSHLISRVQRDKSRMG 655 (862)
Q Consensus 579 -~L~~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l--~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg 655 (862)
.++.-+.+.+|........+.. ..+..++++|.++++...+ ...||..|+|++|.+.++.|.+.||...+.
T Consensus 82 ~~~~~Le~i~HP~V~~~~~~~~~------~~~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s~~ 155 (204)
T PRK14733 82 EAKKWLEDYLHPVINKEIKKQVK------ESDTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDGKNRQ 155 (204)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHH------hcCCCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCCCCHH
Confidence 2333445777776555433221 1123689999999987654 568999999999999999999999854433
Q ss_pred ccccccceehhhhhhhhhcccccccccccccccCC
Q 002962 656 CFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (862)
Q Consensus 656 ~~~~~~~~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (862)
.... ......|.. ..+..||+||+|+.
T Consensus 156 ~a~~---ri~~Q~~~e-----ek~~~aD~VI~N~g 182 (204)
T PRK14733 156 QAVA---FINLQISDK-----EREKIADFVIDNTE 182 (204)
T ss_pred HHHH---HHHhCCCHH-----HHHHhCCEEEECcC
Confidence 2211 122222222 23578999999976
No 82
>PLN02796 D-glycerate 3-kinase
Probab=99.25 E-value=4.6e-12 Score=139.35 Aligned_cols=153 Identities=18% Similarity=0.280 Sum_probs=108.8
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhcee-----eEEEeecccccccC----------------CCCCCCccchHHHHHhh
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVD----------------EGNDLDSIDFDALVQNL 118 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~----------------~~~~~~s~d~~~l~~~L 118 (862)
.++++|||+|++||||||+++.|+..+. +..|++|+||.... .++.|+++|.+.+.+.|
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e~L 177 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNALLELRGNAGSHDLALGVETL 177 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHhhCcchhhhhcCCCCchhHHHHHHHHH
Confidence 4689999999999999999999998774 57899999976311 23557899999999998
Q ss_pred hhhh----cCCCccccccccccccccccc------eeeccCceEEEEcccchhhH-------------------------
Q 002962 119 QDLT----EGKDTLIPMFDYQQKNRIGSK------VIKGASSGVVIVDGTYALDA------------------------- 163 (862)
Q Consensus 119 ~~l~----~~~~i~~p~~~~~~~~~~~~~------~~~~~~~~vVIvEG~~l~~~------------------------- 163 (862)
..++ .++.+.+|.||+..+...++. .....+.+|||+||+++...
T Consensus 178 ~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~l~~~~~~l~~vN~~L~~y~ 257 (347)
T PLN02796 178 EALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDAVKAVDPQLEVVNKNLEAYY 257 (347)
T ss_pred HHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHHhhccChhHHHHHHHHHHHH
Confidence 8887 577899999999986533221 12335678999999998541
Q ss_pred -hhhhccceEEEEEec-eeeeeeeeeeccc------CCc---cchhhHHhhhhhhhhccc
Q 002962 164 -RLRSLLDIRVAVVGG-VHFSLISKVQYDI------GDS---CSLDSLIDSIFPLFRKHI 212 (862)
Q Consensus 164 -~l~~~~D~~I~Vda~-~~~~l~R~i~RD~------~~~---~~~e~~~~~~~p~~~k~I 212 (862)
.+...+|.-|.+.++ .+.-.+||.+-+. ... ....++++.++|.|+.|.
T Consensus 258 ~~w~~~~d~~i~L~a~~~~~v~~WR~qQE~~l~~~~~~gMsde~v~~FV~~~mP~y~~y~ 317 (347)
T PLN02796 258 DAWDKLVDSWIVIKVDDPSWVYEWRLQAEIAMRAKGKPGMSDEEVADFVSRYMPAYKAYL 317 (347)
T ss_pred HHHHHhhceEEEEeCCCchHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 122345677788776 4444566644221 111 345566777888888764
No 83
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.23 E-value=7.3e-13 Score=136.58 Aligned_cols=160 Identities=14% Similarity=0.147 Sum_probs=106.7
Q ss_pred EEEeecCCCCCCcchhHhhhccceeeeEEeecccccccc-----c--------ccCccCCCc-ccchhhhcccch----h
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ-----V--------KDFKYDDFS-SLDLSLLSKNIS----D 579 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~-----~--------~~~n~~~p~-t~D~~lL~~~L~----~ 579 (862)
.+|||+|++||||||+|+.|++.+|+.++++|++.+.-- . +..-+...+ ++|...|.+.+. .
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 479999999999999999999988999999999876510 0 010122346 678777776542 1
Q ss_pred hcCCccccceeeecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeeccccccccccc
Q 002962 580 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 659 (862)
Q Consensus 580 L~~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~ 659 (862)
++.-+.+.+|..-.....+.. ......++++|-.++++..+...||..|+|++|.++++.|.+.|+... .+
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~-----~~~~~~~vv~e~pll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~g~s----~e 152 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELA-----QLKSNPIVVLVIPLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRDGLT----EE 152 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHH-----hcCCCCEEEEEeHHhcCcchHhCCCEEEEEECCHHHHHHHHHHcCCCC----HH
Confidence 222334566654333322221 111236999999999998999999999999999999999999997322 22
Q ss_pred c-cceehhhhhhhhhcccccccccccccccCCC
Q 002962 660 Q-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (862)
Q Consensus 660 ~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (862)
. .+......+ ++..+..||+||+|+.+
T Consensus 153 ~~~~ri~~Q~~-----~~~k~~~aD~vI~N~g~ 180 (195)
T PRK14730 153 EAEARINAQWP-----LEEKVKLADVVLDNSGD 180 (195)
T ss_pred HHHHHHHhCCC-----HHHHHhhCCEEEECCCC
Confidence 1 111111111 23446789999998763
No 84
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.21 E-value=1.2e-12 Score=135.01 Aligned_cols=160 Identities=19% Similarity=0.194 Sum_probs=106.3
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeeccccccccc-------------ccCccCCCcccchhhhcccch----h
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV-------------KDFKYDDFSSLDLSLLSKNIS----D 579 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~-------------~~~n~~~p~t~D~~lL~~~L~----~ 579 (862)
+.+|||+|++||||||+++.|++ +|+.++++|.+.+..-. +.-.+..-+.+|...|.+.+. .
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 80 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA 80 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence 46899999999999999999999 89999999998775110 111122346788877776552 2
Q ss_pred hcCCccccceeeecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeeccccccccccc
Q 002962 580 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 659 (862)
Q Consensus 580 L~~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~ 659 (862)
++.-+.+.+|..-.....+.. ...+..++++|+.+++...+...||..|+|++|.+.++.|...|+.......
T Consensus 81 ~~~L~~i~hP~v~~~~~~~~~-----~~~~~~~vv~e~pll~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~~~s~e~~-- 153 (194)
T PRK00081 81 RKKLEAILHPLIREEILEQLQ-----EAESSPYVVLDIPLLFENGLEKLVDRVLVVDAPPETQLERLMARDGLSEEEA-- 153 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HcccCCEEEEEehHhhcCCchhhCCeEEEEECCHHHHHHHHHHcCCCCHHHH--
Confidence 333345666664443322221 1112269999999999988999999999999999999999888863221110
Q ss_pred ccceehhhhhhhhhcccccccccccccccCC
Q 002962 660 QNDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (862)
Q Consensus 660 ~~~~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (862)
.+......+. +.....||++|+|+.
T Consensus 154 -~~ri~~Q~~~-----~~~~~~ad~vI~N~g 178 (194)
T PRK00081 154 -EAIIASQMPR-----EEKLARADDVIDNNG 178 (194)
T ss_pred -HHHHHHhCCH-----HHHHHhCCEEEECCC
Confidence 1111111121 223467999999865
No 85
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.16 E-value=7.8e-12 Score=121.57 Aligned_cols=150 Identities=21% Similarity=0.206 Sum_probs=100.7
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCcccccccccccccccc
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS 142 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~~ 142 (862)
++|.|+|++||||||+|+.||+.+|..++++..+++++...-...-.+|..+.+ ..|.+|.....+...
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE-----------~~p~iD~~iD~rq~e 69 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAE-----------EDPEIDKEIDRRQKE 69 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHh-----------cCchhhHHHHHHHHH
Confidence 369999999999999999999999999999999988766543333333333221 246666666555432
Q ss_pred ceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccc-hhhHH---hhhhhhhhccc---CCC
Q 002962 143 KVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCS-LDSLI---DSIFPLFRKHI---EPD 215 (862)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~-~e~~~---~~~~p~~~k~I---ep~ 215 (862)
....+-+|+||-++.+-.- ...|++||+.||..+|.+|...|+...-.. ..+.. ......|.++. -.+
T Consensus 70 ----~a~~~nvVlegrLA~Wi~k-~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~YgIDidD 144 (179)
T COG1102 70 ----LAKEGNVVLEGRLAGWIVR-EYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYGIDIDD 144 (179)
T ss_pred ----HHHcCCeEEhhhhHHHHhc-cccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 1124569999999875222 688999999999999999999998654311 11111 11223333332 133
Q ss_pred cccceeecCCccc
Q 002962 216 LHHAQIRINNRFV 228 (862)
Q Consensus 216 ~~~ADiII~N~~~ 228 (862)
..-.|+||+.+..
T Consensus 145 lSiyDLVinTs~~ 157 (179)
T COG1102 145 LSIYDLVINTSKW 157 (179)
T ss_pred ceeeEEEEecccC
Confidence 6678999887743
No 86
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.15 E-value=3.4e-12 Score=132.14 Aligned_cols=161 Identities=19% Similarity=0.208 Sum_probs=106.9
Q ss_pred EEEeecCCCCCCcchhHhhhccceeeeEEeecccccc----cc---------cccCccCCCcccchhhhcccch----hh
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS----EQ---------VKDFKYDDFSSLDLSLLSKNIS----DI 580 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~----~~---------~~~~n~~~p~t~D~~lL~~~L~----~L 580 (862)
.+|||+|++||||||+++.|++ +|+.+++.|+..+. .. .+....+..+++|...|.+.+- .+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 5799999999999999999998 79999999976543 11 0111223457888888887552 23
Q ss_pred cCCccccceeeecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeecccccccccccc
Q 002962 581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 660 (862)
Q Consensus 581 ~~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~ 660 (862)
+.-+.+.+|........+.. . ....+..++++|..+++...+.+.+|..|||++|.+.++.|.+.|+ |.+.+.
T Consensus 81 ~~le~i~hP~v~~~~~~~~~--~-~~~~~~~~vv~e~plL~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~----g~s~e~ 153 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFN--E-ARAQGAKVAVYDMPLLVEKGLDRKMDLVVVVDVDVEERVRRLVEKR----GLDEDD 153 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHH--H-HHhcCCCEEEEEeeceeEcCccccCCeEEEEECCHHHHHHHHHHcC----CCCHHH
Confidence 33345667765333322210 0 0012346899999999988888899999999999999999988885 332222
Q ss_pred -cceehhhhhhhhhcccccccccccccccCCC
Q 002962 661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (862)
Q Consensus 661 -~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (862)
........+.+. ....||++|+|+.+
T Consensus 154 ~~~ri~~Q~~~~~-----k~~~ad~vI~N~g~ 180 (200)
T PRK14734 154 ARRRIAAQIPDDV-----RLKAADIVVDNNGT 180 (200)
T ss_pred HHHHHHhcCCHHH-----HHHhCCEEEECcCC
Confidence 112222222222 24689999998764
No 87
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.14 E-value=3.5e-12 Score=131.56 Aligned_cols=159 Identities=15% Similarity=0.173 Sum_probs=107.1
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeeccccccccc-------------ccCccCCCcccchhhhcccch----hhc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV-------------KDFKYDDFSSLDLSLLSKNIS----DIR 581 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~-------------~~~n~~~p~t~D~~lL~~~L~----~L~ 581 (862)
+|||+|++||||||+++.|++ +|+.++++|...+..-. +..-++.-+++|...|.+.+. .++
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 489999999999999999986 69999999988654110 111123347788888877552 233
Q ss_pred CCccccceeeecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeeccccccccccccc
Q 002962 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQN 661 (862)
Q Consensus 582 ~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~ 661 (862)
.-+.+.+|..-........ . .....++|+|..++++..+...||..|||++|.+.++.|.+.|+....... .
T Consensus 80 ~L~~i~hP~v~~~~~~~~~--~---~~~~~~vi~e~pLL~E~~~~~~~D~vi~V~a~~e~r~~RL~~R~g~s~e~a---~ 151 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQ--T---TAEGKLVIWEVPLLFETDAYTLCDATVTVDSDPEESILRTISRDGMKKEDV---L 151 (196)
T ss_pred HHHHHhhHHHHHHHHHHHH--H---HhcCCcEEEEeeeeeEcCchhhCCEEEEEECCHHHHHHHHHHcCCCCHHHH---H
Confidence 3445677765543322220 1 112368999999999988889999999999999999999999974322111 1
Q ss_pred ceehhhhhhhhhcccccccccccccccCCC
Q 002962 662 DIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (862)
Q Consensus 662 ~~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (862)
....... -+.+....||++|.|+.+
T Consensus 152 ~ri~~Q~-----~~~~k~~~aD~vI~N~~~ 176 (196)
T PRK14732 152 ARIASQL-----PITEKLKRADYIVRNDGN 176 (196)
T ss_pred HHHHHcC-----CHHHHHHhCCEEEECCCC
Confidence 1111111 234456789999998764
No 88
>PLN02422 dephospho-CoA kinase
Probab=99.12 E-value=5.1e-12 Score=132.90 Aligned_cols=161 Identities=17% Similarity=0.123 Sum_probs=108.9
Q ss_pred EEEeecCCCCCCcchhHhhhccceeeeEEeeccccccc----c-----c----ccCccCCCcccchhhhcccch----hh
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE----Q-----V----KDFKYDDFSSLDLSLLSKNIS----DI 580 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~----~-----~----~~~n~~~p~t~D~~lL~~~L~----~L 580 (862)
.+|||+|++||||||+++.|++ +|+.++++|+..+.. . . +..-++..+++|...|.+.+. .+
T Consensus 2 ~~igltG~igsGKstv~~~l~~-~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS-SGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999995 799999999987651 0 0 111133457888888887652 23
Q ss_pred cCCccccceeeecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeecccccccccccc
Q 002962 581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 660 (862)
Q Consensus 581 ~~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~ 660 (862)
+.-+.+.+|..-.....+.. ... ..+.+++++|.++++...+...||..|+|++|.+.++.|.+.|+.. +.+.
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~--~~~-~~~~~~vv~eipLL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~g~----s~ee 153 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEIL--KLW-LKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPETQLERLMARDGL----SEEQ 153 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHH--HHH-hcCCCEEEEEehhhhhcchhhhCCEEEEEECCHHHHHHHHHHcCCC----CHHH
Confidence 34456777775443322110 000 1123699999999999888999999999999999999999999732 2221
Q ss_pred -cceehhhhhhhhhcccccccccccccccCCC
Q 002962 661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (862)
Q Consensus 661 -~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (862)
........|.. .....||++|+|+.+
T Consensus 154 a~~Ri~~Q~~~e-----ek~~~AD~VI~N~gs 180 (232)
T PLN02422 154 ARNRINAQMPLD-----WKRSKADIVIDNSGS 180 (232)
T ss_pred HHHHHHHcCChh-----HHHhhCCEEEECCCC
Confidence 11122222221 125779999998764
No 89
>COG4240 Predicted kinase [General function prediction only]
Probab=99.11 E-value=1.2e-10 Score=118.62 Aligned_cols=106 Identities=22% Similarity=0.350 Sum_probs=82.2
Q ss_pred HhcCCeEEEeecCCCCCCcchHHHHhhhce---e---eEEEeecccccccC--------------CCCCCCccchHHHHH
Q 002962 57 EKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G---CTLISMENYRVGVD--------------EGNDLDSIDFDALVQ 116 (862)
Q Consensus 57 ~~~~~~~iIgItG~sGSGKSTlA~~La~~L---g---~~vI~~D~~~~~~~--------------~~~~~~s~d~~~l~~ 116 (862)
.+.++|+++||+||.||||||+|..|...| | +..+|.||||.... .++-|+++|...+..
T Consensus 45 qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlgln 124 (300)
T COG4240 45 QERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLN 124 (300)
T ss_pred hhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHH
Confidence 346779999999999999999999887654 3 56799999987532 356789999999999
Q ss_pred hhhhhhcCCC-cccccccccc----ccccccceeeccCceEEEEcccchhh
Q 002962 117 NLQDLTEGKD-TLIPMFDYQQ----KNRIGSKVIKGASSGVVIVDGTYALD 162 (862)
Q Consensus 117 ~L~~l~~~~~-i~~p~~~~~~----~~~~~~~~~~~~~~~vVIvEG~~l~~ 162 (862)
.|..+..+++ +.+|.||+.. ++|.........+.+++|+||.++..
T Consensus 125 VLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGf 175 (300)
T COG4240 125 VLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGF 175 (300)
T ss_pred HHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeec
Confidence 9999988764 6889999944 44433322333348899999999854
No 90
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.10 E-value=7.4e-12 Score=132.86 Aligned_cols=163 Identities=14% Similarity=0.125 Sum_probs=105.2
Q ss_pred EEEeecCCCCCCcchhHhhhccceeeeEEeeccccccc-c--------c----ccCccCCCcccchhhhcccch----hh
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE-Q--------V----KDFKYDDFSSLDLSLLSKNIS----DI 580 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~-~--------~----~~~n~~~p~t~D~~lL~~~L~----~L 580 (862)
++|||+|+.||||||+++.|++.+|+.+|++|...+.- + . +..-.+.-+.+|...|.+.+- .+
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~ 81 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR 81 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 68999999999999999999988899999999886651 1 0 111122247888888887552 23
Q ss_pred cCCccccceeeecccccccCce---ee---eecccceeEEEcceecccHhh-hhccceeeeeecccchheeheeeccccc
Q 002962 581 RNGRRTKVPIFDLETGARSGFK---EL---EVSEDCGVIIFEGVYALHPEI-RKSLDLWIAVVGGVHSHLISRVQRDKSR 653 (862)
Q Consensus 581 ~~g~~v~~P~yd~~~~~r~~~~---~~---~~~~~~~vVIvEG~~~~~~~l-~~~~D~~I~v~~~~d~rl~Rri~Rd~~~ 653 (862)
+.-+.+.+|..-.....+.... .. .......++++|.+++++..+ ...||..|+|+++.+.++.|.+.|+.
T Consensus 82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R~g-- 159 (244)
T PTZ00451 82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRKRNG-- 159 (244)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcCCeEEEEECCHHHHHHHHHHcCC--
Confidence 3345566776433321111000 00 001123599999999998765 45789999999999999999888853
Q ss_pred ccccccc-cceehhhhhhhhhcccccccccccccccC
Q 002962 654 MGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (862)
Q Consensus 654 rg~~~~~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~ 689 (862)
.+.++ .+......+. ...+..||+||.|+
T Consensus 160 --~s~eea~~Ri~~Q~~~-----~ek~~~aD~VI~N~ 189 (244)
T PTZ00451 160 --FSKEEALQRIGSQMPL-----EEKRRLADYIIEND 189 (244)
T ss_pred --CCHHHHHHHHHhCCCH-----HHHHHhCCEEEECC
Confidence 22221 1111111121 22357899999997
No 91
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.03 E-value=2.9e-11 Score=126.06 Aligned_cols=134 Identities=22% Similarity=0.306 Sum_probs=88.0
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccccc---------cc-cC-----ccCCCcc--cchhhhcccc
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------VK-DF-----KYDDFSS--LDLSLLSKNI 577 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~---------~~-~~-----n~~~p~t--~D~~lL~~~L 577 (862)
..+++|||+|++||||||+++.|.+ +|+.+++.|...+.-. .. .+ +.+..+. +|...|.+.+
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~v 81 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVV 81 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHH
Confidence 4578999999999999999999997 8999999997655310 00 00 0111122 5655554332
Q ss_pred ----hhhcCCccccceeeecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeecccc
Q 002962 578 ----SDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKS 652 (862)
Q Consensus 578 ----~~L~~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~ 652 (862)
..++.-+.+.+|........... .. ...+..++++|+.+++...+...+|..|+|++|.+.+..|.+.|+..
T Consensus 82 f~~~~~~~~l~~i~hp~i~~~~~~~i~--~~-~~~~~~vvv~e~pLL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R~~~ 157 (208)
T PRK14731 82 FSDPEKLGALNRLIHPKVFAAFQRAVD--RA-ARRGKRILVKEAAILFESGGDAGLDFIVVVAADTELRLERAVQRGMG 157 (208)
T ss_pred hCCHHHHHHHHHHHCHHHHHHHHHHHH--HH-HhcCCCEEEEEeeeeeecCchhcCCeEEEEECCHHHHHHHHHHcCCC
Confidence 12222334555653322211110 00 01234699999999888888888999999999999999999998743
No 92
>PRK01184 hypothetical protein; Provisional
Probab=98.99 E-value=1e-10 Score=119.14 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=86.7
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccC-CCCCCCccchHHHHHhhhhhhcCCCcccccccccccccc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD-EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~-~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~ 140 (862)
|++|+|+|++||||||+|+ +++.+|+.++++|+..+... ..+.+... +.+.+....+... .....+....+..+
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~--~~~g~~~~~~~~~--~~~~~~~~~~~~~i 75 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTD--ENIGKVAIDLRKE--LGMDAVAKRTVPKI 75 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCc--HHHHHHHHHHHHH--HChHHHHHHHHHHH
Confidence 5689999999999999998 56778999999988654322 22222111 1122211111110 00000000111111
Q ss_pred ccceeeccCceEEEEcccchh-h-Hhhhhccc---eEEEEEeceeeeeeeeeecccCCc-cchhhHHhhhhhhhhcccCC
Q 002962 141 GSKVIKGASSGVVIVDGTYAL-D-ARLRSLLD---IRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHIEP 214 (862)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l~-~-~~l~~~~D---~~I~Vda~~~~~l~R~i~RD~~~~-~~~e~~~~~~~p~~~k~Iep 214 (862)
......++|++|.... + ..+.+.++ .+|+|+++.+.+..|...|+.... .+.+++.++.......-+++
T Consensus 76 -----~~~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~ 150 (184)
T PRK01184 76 -----REKGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGE 150 (184)
T ss_pred -----HhcCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHH
Confidence 0123468999997433 2 34444555 899999999999999988864322 23344443322211111233
Q ss_pred CcccceeecCCcc
Q 002962 215 DLHHAQIRINNRF 227 (862)
Q Consensus 215 ~~~~ADiII~N~~ 227 (862)
..+.||++|+|+.
T Consensus 151 ~~~~ad~vI~N~~ 163 (184)
T PRK01184 151 VIALADYMIVNDS 163 (184)
T ss_pred HHHhcCEEEeCCC
Confidence 3578999999874
No 93
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=98.98 E-value=4.1e-11 Score=123.64 Aligned_cols=161 Identities=18% Similarity=0.169 Sum_probs=102.8
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeecccccccc--------cccCccC-----CCcccchhhhcccch----h
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ--------VKDFKYD-----DFSSLDLSLLSKNIS----D 579 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~--------~~~~n~~-----~p~t~D~~lL~~~L~----~ 579 (862)
+.+|||+|.+||||||+|+.+++ +|+.++++|++.+.-- .-...|+ .-+.+|...|.+.+- .
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 57999999999999999999999 8999999999987410 0000122 224566666655331 2
Q ss_pred hcCCccccceeeecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeeccccccccccc
Q 002962 580 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 659 (862)
Q Consensus 580 L~~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~ 659 (862)
++.-+.+.+|....... .. ... ....++++|-.+++.......+|..|.|++|.++++.|.+.|+...++...
T Consensus 81 ~~~Le~i~hPli~~~~~-~~----~~~-~~~~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~~~- 153 (201)
T COG0237 81 RLKLEKILHPLIRAEIK-VV----IDG-ARSPYVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEEDAE- 153 (201)
T ss_pred HHHHHHhhhHHHHHHHH-HH----HHH-hhCCceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcCCCCHHHHH-
Confidence 22234455664333221 11 000 112288888888887666666999999999999999999999844322211
Q ss_pred ccceehhhhhhhhhcccccccccccccccCCCC
Q 002962 660 QNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDP 692 (862)
Q Consensus 660 ~~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~ 692 (862)
.......+..++ ...||+|++|++..
T Consensus 154 --~~~~~Q~~~~ek-----~~~ad~vi~n~~~i 179 (201)
T COG0237 154 --ARLASQRDLEEK-----LALADVVIDNDGSI 179 (201)
T ss_pred --HHHHhcCCHHHH-----HhhcCChhhcCCCH
Confidence 111122233333 47899999998854
No 94
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.98 E-value=3.5e-11 Score=123.23 Aligned_cols=160 Identities=18% Similarity=0.212 Sum_probs=103.1
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeeccccccc----c-----c-ccC---ccCCCcccchhhhcccch----hhc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE----Q-----V-KDF---KYDDFSSLDLSLLSKNIS----DIR 581 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~----~-----~-~~~---n~~~p~t~D~~lL~~~L~----~L~ 581 (862)
+|||+|++||||||+++.|++..++.++++|.+.+.- . . ..+ -++..|.+|...|.+.+. .+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 5899999999999999999997679999999996541 0 0 011 122346677766666542 122
Q ss_pred CCccccceeeecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeecccccccccccc-
Q 002962 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ- 660 (862)
Q Consensus 582 ~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~- 660 (862)
.-+.+.+|.+-........ . ......+||+|..++++..+...+|..|+++++.+.++.|.+.|+.. +.+.
T Consensus 81 ~le~ilhP~i~~~i~~~i~--~--~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~~~----s~~~~ 152 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLA--Q--FQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQLQLERLMQRDNL----TEEEV 152 (188)
T ss_pred HHHHhhCHHHHHHHHHHHH--H--hhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCHHHHHHHHHHcCCC----CHHHH
Confidence 2234556664443322220 0 01122588999988887788899999999999999999999999832 2221
Q ss_pred cceehhhhhhhhhcccccccccccccccCCC
Q 002962 661 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (862)
Q Consensus 661 ~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (862)
.+......+. ...+..||++|+|+.+
T Consensus 153 ~~r~~~q~~~-----~~~~~~ad~vI~N~~~ 178 (188)
T TIGR00152 153 QKRLASQMDI-----EERLARADDVIDNSAT 178 (188)
T ss_pred HHHHHhcCCH-----HHHHHhCCEEEECCCC
Confidence 1111111111 2335679999998764
No 95
>PRK06217 hypothetical protein; Validated
Probab=98.94 E-value=7.8e-10 Score=112.87 Aligned_cols=103 Identities=20% Similarity=0.201 Sum_probs=71.9
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCC--CCCCccchHHHHHhhhhhhcCCCccccccccccccc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG--NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~--~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~ 139 (862)
|..|.|+|++||||||+|+.|++.+|++++++|+++....+. ..... +...+...+..+.
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------- 62 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPPFTTKRP-PEERLRLLLEDLR----------------- 62 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCCccccCC-HHHHHHHHHHHHh-----------------
Confidence 356999999999999999999999999999999998632211 01110 0011111111110
Q ss_pred cccceeeccCceEEEEcccchhh-HhhhhccceEEEEEeceeeeeeeeeeccc
Q 002962 140 IGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDI 191 (862)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~~l~R~i~RD~ 191 (862)
..+-+|+||.+... ..+...+|.+|||++|.+.++.|...|..
T Consensus 63 ---------~~~~~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~ 106 (183)
T PRK06217 63 ---------PREGWVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLREF 106 (183)
T ss_pred ---------cCCCEEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCcc
Confidence 11247888998854 45667899999999999999999998864
No 96
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.94 E-value=1.2e-10 Score=110.12 Aligned_cols=115 Identities=25% Similarity=0.352 Sum_probs=72.4
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCc--ccchhhhcccchhhcCCccccceeeecccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFS--SLDLSLLSKNISDIRNGRRTKVPIFDLETG 596 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~--t~D~~lL~~~L~~L~~g~~v~~P~yd~~~~ 596 (862)
+|+|+|++||||||+|+.|++.+|+.++++|++++.........+.+. ..+.+.+.+.+..+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------- 66 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQLQN-------------- 66 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHHHE--------------
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhhhc--------------
Confidence 689999999999999999999999999999995443211111111111 1122333333333211
Q ss_pred cccCceeeeecccceeEEEcceecccHh-hhhccceeeeeecccchheeheeeccccccccc
Q 002962 597 ARSGFKELEVSEDCGVIIFEGVYALHPE-IRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCF 657 (862)
Q Consensus 597 ~r~~~~~~~~~~~~~vVIvEG~~~~~~~-l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~ 657 (862)
....+.+|+||.+..... .....|..||++.+.+.++.|++.|...++|+.
T Consensus 67 ----------~~~~~~~ii~g~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R~~~~~~r~ 118 (121)
T PF13207_consen 67 ----------KPDNDNWIIDGSYESEMEIRLPEFDHVIYLDAPDEECRERRLKRRLRRRGRD 118 (121)
T ss_dssp ----------TTT--EEEEECCSCHCCHSCCHHGGCEEEEEEEEHHHHHHHHHHHHHHEESS
T ss_pred ----------cCCCCeEEEeCCCccchhhhhhcCCEEEEEECCCHHHHHHHHHHHhHHcCCC
Confidence 134578999996652111 223457889999988878888888877766654
No 97
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=98.92 E-value=3.5e-09 Score=105.20 Aligned_cols=115 Identities=22% Similarity=0.375 Sum_probs=101.3
Q ss_pred CCCCeEEEE-EecceeeEEeeccccCCCeeeccccceeee--hhhhhhhhhccceEEEEEEeeeeeeecCeEEEEeeccC
Q 002962 747 TESDCIRVR-ICEGRFALLIREPLREGNFIIQPKVDFDIS--ISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQ 823 (862)
Q Consensus 747 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~f~~~--~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (862)
.....+|+| ..+|++.+.+..|.+|++..++-.++|+|+ -.+.--|.+|||..++-++.+..+|..++++|++|.++
T Consensus 47 ~tdealRiR~~~~~~~~lTYKgp~ld~~~k~r~E~E~~v~D~~~~~~il~~LGF~~~~~VkK~R~iY~~~~~~i~lD~Ve 126 (178)
T COG1437 47 DTDEALRIRRINGGEVFLTYKGPKLDRESKTREEIEIEVSDVEKALEILKRLGFKEVAVVKKTREIYKVGNVTIELDAVE 126 (178)
T ss_pred cCcceeEEEEecCCcEEEEEecccccccccceeeEEEEeCCHHHHHHHHHHcCCceeeEEEEEEEEEeeCCEEEEEeccc
Confidence 345689999 778999999999999999998888888887 56788899999999999999999999999999999999
Q ss_pred CCCCCceEEe----c-----cCHHHHhhccceeeec-CcccceehhccC
Q 002962 824 DAPSPYLQIK----G-----VDKEAVAAAGSTLKLD-GSYTTKVMSLAL 862 (862)
Q Consensus 824 ~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 862 (862)
+|+. |+.|- . ..++.+-+++.+|||. +.-+++||+|+|
T Consensus 127 gLG~-F~EIE~~~~d~~e~~~~~~~~~~i~~~lGl~~~~~~r~sYlELl 174 (178)
T COG1437 127 GLGD-FLEIEVMVDDENEIDGAKEEIEEIARQLGLKEEDLERRSYLELL 174 (178)
T ss_pred CCcc-cEEEEEecCCchhhHHHHHHHHHHHHHhCCChhcccchhHHHHH
Confidence 9998 99882 1 2346788999999997 999999999986
No 98
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=98.91 E-value=1.3e-10 Score=116.66 Aligned_cols=165 Identities=15% Similarity=0.148 Sum_probs=111.3
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeeccccccccc-c--cC-----ccC-----CCcccchhhhcccch----h
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV-K--DF-----KYD-----DFSSLDLSLLSKNIS----D 579 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~-~--~~-----n~~-----~p~t~D~~lL~~~L~----~ 579 (862)
.++||++|++||||||+++.+. .+|+++|+.|...+.--. + .+ .|+ .-|.+|.+.|.+.+- .
T Consensus 1 M~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~ 79 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK 79 (225)
T ss_pred CeEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHH
Confidence 3799999999999999999999 689999999988764100 0 00 121 235667777766442 1
Q ss_pred hcCCccccceeeecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeeccccccccccc
Q 002962 580 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 659 (862)
Q Consensus 580 L~~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~ 659 (862)
...-+.+.+|..-+..-.... .....+..++|+|-+++|+..+...+-..|.|.+|.+..++|.+.||...+....
T Consensus 80 r~~Ln~IthP~Ir~em~ke~~---~~~l~G~r~ivlDiPLLFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~dAe- 155 (225)
T KOG3220|consen 80 RQALNKITHPAIRKEMFKEIL---KLLLRGYRVIVLDIPLLFEAKLLKICHKTVVVTCDEELQLERLVERDELSEEDAE- 155 (225)
T ss_pred HHHHHhcccHHHHHHHHHHHH---HHHhcCCeEEEEechHHHHHhHHhheeeEEEEEECcHHHHHHHHHhccccHHHHH-
Confidence 222344667765554322110 0123567899999999999889999999999999999999999999943322211
Q ss_pred ccceehhhhhhhhhcccccccccccccccCCCCc
Q 002962 660 QNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPV 693 (862)
Q Consensus 660 ~~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~r 693 (862)
.......|..+ ..+.||+||+|+-+|.
T Consensus 156 --~Rl~sQmp~~~-----k~~~a~~Vi~Nng~~~ 182 (225)
T KOG3220|consen 156 --NRLQSQMPLEK-----KCELADVVIDNNGSLE 182 (225)
T ss_pred --HHHHhcCCHHH-----HHHhhheeecCCCChH
Confidence 12222333333 3578999999988763
No 99
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.89 E-value=2.2e-10 Score=111.64 Aligned_cols=139 Identities=14% Similarity=0.162 Sum_probs=84.0
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccccccccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~~~ 143 (862)
+|+|+|++||||||+|+.|++.+|+++++.|.+.............+...+.+.+... ...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~~~~~~~~~~~i~~~l~~~------------------~~~- 61 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASEVAAIPEVRKALDER------------------QRE- 61 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHHHHHHhcccHhHHHHHHHH------------------HHH-
Confidence 5899999999999999999999999999999543211000000000001111111110 000
Q ss_pred eeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCc--cchhhHHh----hhhhhhhcccCCCcc
Q 002962 144 VIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLID----SIFPLFRKHIEPDLH 217 (862)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~--~~~e~~~~----~~~p~~~k~Iep~~~ 217 (862)
......+|+||..+.. .+.+.+|++||+++|.+.+.+|+++|+...+ .+.+++.+ +-.+....|+.|+..
T Consensus 62 ---~~~~~~~Vidg~~~~~-~~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 137 (147)
T cd02020 62 ---LAKKPGIVLEGRDIGT-VVFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPLKL 137 (147)
T ss_pred ---HhhCCCEEEEeeeeee-EEcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccccC
Confidence 1112348889987633 1235689999999999999999999653321 24444433 235667788888864
Q ss_pred cc-eeecCC
Q 002962 218 HA-QIRINN 225 (862)
Q Consensus 218 ~A-DiII~N 225 (862)
.+ |++|++
T Consensus 138 ~~~dl~i~~ 146 (147)
T cd02020 138 AEDAIVIDT 146 (147)
T ss_pred CCCcEEEeC
Confidence 44 566654
No 100
>PRK06217 hypothetical protein; Validated
Probab=98.85 E-value=1.3e-09 Score=111.27 Aligned_cols=105 Identities=18% Similarity=0.172 Sum_probs=72.5
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceeeecccccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~~~~r 598 (862)
.|.|.|++||||||+|++|++.++..++++|++++...... +......+ ..+...+..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~------------------ 61 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPP--FTTKRPPE-ERLRLLLEDL------------------ 61 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCC--ccccCCHH-HHHHHHHHHH------------------
Confidence 58899999999999999999999999999999997421111 11111100 0000000110
Q ss_pred cCceeeeecccceeEEEcceeccc-Hhhhhccceeeeeecccchheeheeeccccc
Q 002962 599 SGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSR 653 (862)
Q Consensus 599 ~~~~~~~~~~~~~vVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~ 653 (862)
...+-+|+||.+..+ ..+...+|..||+++|.+.++.|...|....
T Consensus 62 ---------~~~~~~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~ 108 (183)
T PRK06217 62 ---------RPREGWVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLREFQR 108 (183)
T ss_pred ---------hcCCCEEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCcccc
Confidence 112457889998764 4567789999999999999999999987653
No 101
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=98.85 E-value=3.2e-10 Score=129.12 Aligned_cols=159 Identities=15% Similarity=0.144 Sum_probs=99.2
Q ss_pred EEEeecCCCCCCcchhHhhhccceeeeEEeecccccc----cc-----c----ccCccCCCcccchhhhcccch----hh
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS----EQ-----V----KDFKYDDFSSLDLSLLSKNIS----DI 580 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~----~~-----~----~~~n~~~p~t~D~~lL~~~L~----~L 580 (862)
.+|||+|+.||||||+++.|++ +|+.++++|...+. .. . +....+.-|++|...|.+.+- .+
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999998 79999999988765 11 0 111122347888888887552 22
Q ss_pred cCCccccceeeecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeecccccccccccc
Q 002962 581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 660 (862)
Q Consensus 581 ~~g~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~ 660 (862)
+.-+.+.+|..-....... .......++++|..++++..+...||..|||++|.+.++.|.+.|+ |.+.+.
T Consensus 81 ~~le~i~hP~I~~~i~~~i-----~~~~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e~ri~Rl~~rR----g~s~~~ 151 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELI-----AAAPEDAVVVEDIPLLVESGMAPLFHLVVVVDADVEVRVRRLVEQR----GMAEAD 151 (395)
T ss_pred HHHHHhhhHHHHHHHHHHH-----HhcCCCCEEEEEeeeeecCCchhhCCEEEEEECCHHHHHHHHHhcC----CCCHHH
Confidence 2233455565332221111 1111224555555656667888999999999999999998877643 322221
Q ss_pred -cceehhhhhhhhhcccccccccccccccCCC
Q 002962 661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (862)
Q Consensus 661 -~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (862)
...+....+ .++....||++|+|+.+
T Consensus 152 a~~ri~~Q~~-----~e~k~~~AD~vIdN~~s 178 (395)
T PRK03333 152 ARARIAAQAS-----DEQRRAVADVWLDNSGT 178 (395)
T ss_pred HHHHHHhcCC-----hHHHHHhCCEEEECCCC
Confidence 011111111 12336789999998764
No 102
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.84 E-value=8.7e-10 Score=110.40 Aligned_cols=155 Identities=19% Similarity=0.172 Sum_probs=86.0
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCcccccccccccccccc
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS 142 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~~ 142 (862)
++|+|+|++||||||+|+.|++.+|++++++|++++........ +...+..... . .|.+..........
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~----~----~~~~~~~~~~~i~~ 69 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGL---DLIEFLNYAE----E----NPEIDKKIDRRIHE 69 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCC---CHHHHHHHHh----c----CcHHHHHHHHHHHH
Confidence 37999999999999999999999999999998876543221111 1111111000 0 01111100000000
Q ss_pred ceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhhHHh-hh---hhhhhccc---CCC
Q 002962 143 KVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID-SI---FPLFRKHI---EPD 215 (862)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~-~~---~p~~~k~I---ep~ 215 (862)
. ......+|++|.+... .+.+.+|++|||++|.+.+.+|...|+..........+. +. ...+..+. .-.
T Consensus 70 -~--~~~~~~~Vi~g~~~~~-~~~~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~ 145 (171)
T TIGR02173 70 -I--ALKEKNVVLESRLAGW-IVREYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDD 145 (171)
T ss_pred -H--HhcCCCEEEEecccce-eecCCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 0 0122357778876532 224568899999999999999999887543322222221 11 11122222 223
Q ss_pred cccceeecCCccchhhHh
Q 002962 216 LHHAQIRINNRFVSSFRE 233 (862)
Q Consensus 216 ~~~ADiII~N~~~~~~~~ 233 (862)
...-|++|+++ ..++++
T Consensus 146 ~~~ydl~i~t~-~~~~~~ 162 (171)
T TIGR02173 146 LSIYDLVINTS-NWDPNN 162 (171)
T ss_pred cccccEEEECC-CCCHHH
Confidence 45668888776 445555
No 103
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.83 E-value=1.5e-09 Score=102.51 Aligned_cols=104 Identities=27% Similarity=0.356 Sum_probs=65.4
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeeccccc--ccCCCCCCC----ccchHHHHHhhhhhhcCCCccccccccccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV--GVDEGNDLD----SIDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~--~~~~~~~~~----s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~ 137 (862)
+|+|+|++||||||+|+.|++.+|+.++++|+++. ++....... ..+.+.+...+..+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------- 66 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQLQN-------------- 66 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHHHE--------------
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhhhc--------------
Confidence 69999999999999999999999999999999532 332222111 1112222222322211
Q ss_pred cccccceeeccCceEEEEcccchhh-HhhhhccceEEEEEeceeeeeeeeeecc
Q 002962 138 NRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
......+|+||.+... .......|..||++++.+.+..|+++|.
T Consensus 67 ---------~~~~~~~ii~g~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R~ 111 (121)
T PF13207_consen 67 ---------KPDNDNWIIDGSYESEMEIRLPEFDHVIYLDAPDEECRERRLKRR 111 (121)
T ss_dssp ---------TTT--EEEEECCSCHCCHSCCHHGGCEEEEEEEEHHHHHHHHHHH
T ss_pred ---------cCCCCeEEEeCCCccchhhhhhcCCEEEEEECCCHHHHHHHHHHH
Confidence 2345689999976622 1233456789999999885555655553
No 104
>PRK04182 cytidylate kinase; Provisional
Probab=98.83 E-value=1.2e-09 Score=110.11 Aligned_cols=150 Identities=16% Similarity=0.148 Sum_probs=81.4
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccccccccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~~~ 143 (862)
+|+|+|++||||||+|+.|++.+|..++++|++++........ +...+.+. +. ..|.++.........
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~---~~~~~~~~------~~--~~~~~~~~~~~~~~~- 69 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGM---SLEEFNKY------AE--EDPEIDKEIDRRQLE- 69 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCC---CHHHHHHH------hh--cCchHHHHHHHHHHH-
Confidence 7999999999999999999999999999998876643321111 11111110 00 011111111111100
Q ss_pred eeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhhHH-hhhhh---hhhccc---CCCc
Q 002962 144 VIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLI-DSIFP---LFRKHI---EPDL 216 (862)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~-~~~~p---~~~k~I---ep~~ 216 (862)
.......+|++|.+... .+.+..+++|||++|.+.+++|...|+..........+ +.... .+..+. .+..
T Consensus 70 --~~~~~~~~Vi~g~~~~~-~~~~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~ 146 (180)
T PRK04182 70 --IAEKEDNVVLEGRLAGW-MAKDYADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDL 146 (180)
T ss_pred --HHhcCCCEEEEEeecce-EecCCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 01022346677754321 11133789999999999999998888643221111111 11111 111111 2334
Q ss_pred ccceeecCCccc
Q 002962 217 HHAQIRINNRFV 228 (862)
Q Consensus 217 ~~ADiII~N~~~ 228 (862)
..||++|+++..
T Consensus 147 ~~~d~~idt~~~ 158 (180)
T PRK04182 147 SIYDLVINTSRW 158 (180)
T ss_pred ccccEEEECCCC
Confidence 689999998743
No 105
>PRK08118 topology modulation protein; Reviewed
Probab=98.80 E-value=3.1e-09 Score=106.97 Aligned_cols=99 Identities=15% Similarity=0.167 Sum_probs=69.1
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCcccccccccccccccc
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS 142 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~~ 142 (862)
..|.|.|++||||||+|+.|++.+|+++++.|.++.... +... ..+...+.+..+..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~-w~~~---~~~~~~~~~~~~~~------------------- 58 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN-WEGV---PKEEQITVQNELVK------------------- 58 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC-CcCC---CHHHHHHHHHHHhc-------------------
Confidence 459999999999999999999999999999999865211 1010 11111122221111
Q ss_pred ceeeccCceEEEEcccchhh-HhhhhccceEEEEEeceeeeeeeeeeccc
Q 002962 143 KVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDI 191 (862)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~~l~R~i~RD~ 191 (862)
.+-+|+||.+.-. ......+|.+|||++|...++.|.++|..
T Consensus 59 -------~~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 59 -------EDEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred -------CCCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH
Confidence 1238999988733 33446799999999999999999888853
No 106
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.80 E-value=1.2e-09 Score=111.64 Aligned_cols=173 Identities=16% Similarity=0.158 Sum_probs=101.0
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCC---CCCCCccchHHHHHhhhhhh-----------cCCCc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE---GNDLDSIDFDALVQNLQDLT-----------EGKDT 127 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~---~~~~~s~d~~~l~~~L~~l~-----------~~~~i 127 (862)
.++|+|+||+||||||+|+.||+.||+..+++..+|+.+.- ....+.-|.+.+...+..+. .|+++
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedv 83 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDV 83 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchh
Confidence 38999999999999999999999999999999999984210 11122223333333322211 11121
Q ss_pred cccccccccc-------------ccc-ccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCC
Q 002962 128 LIPMFDYQQK-------------NRI-GSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGD 193 (862)
Q Consensus 128 ~~p~~~~~~~-------------~~~-~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~ 193 (862)
.-..-..... ... ..+.......+-+|+||--+. ..+.+.++++||+++++++|.+||.+-....
T Consensus 84 s~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiG-TvV~PdA~lKiFLtAS~e~RA~RR~~q~~~~ 162 (222)
T COG0283 84 SEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIG-TVVFPDAELKIFLTASPEERAERRYKQLQAK 162 (222)
T ss_pred hhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCc-ceECCCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 1110000000 000 000111122245899998775 3556778999999999999999997765444
Q ss_pred cc--chhhHHhh----hhhhhhcccCCCcccceeecCCccchhhHhhh
Q 002962 194 SC--SLDSLIDS----IFPLFRKHIEPDLHHAQIRINNRFVSSFREAI 235 (862)
Q Consensus 194 ~~--~~e~~~~~----~~p~~~k~Iep~~~~ADiII~N~~~~~~~~~~ 235 (862)
.. ..+++.+. -.....+-+.|-+...|.++.-+..++++|-.
T Consensus 163 g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv 210 (222)
T COG0283 163 GFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVV 210 (222)
T ss_pred cCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCcHHHHH
Confidence 31 23444433 33444555677777777665444455555544
No 107
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.79 E-value=1.2e-09 Score=126.83 Aligned_cols=165 Identities=15% Similarity=0.129 Sum_probs=95.6
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccC----CCCCCCccchHHHHHhh---hhhh-----cCCCcc
Q 002962 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD----EGNDLDSIDFDALVQNL---QDLT-----EGKDTL 128 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~----~~~~~~s~d~~~l~~~L---~~l~-----~~~~i~ 128 (862)
++.+|+|+|++||||||+|+.|++.||+.++++|.+|+... ..+ .+.-+...+...+ .... .+..+.
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~i~ 361 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEG-IDPQDEEALAELLSDLKIELKPSSGSPQRVW 361 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcC-cCCcCHHHHHHHHhcCCeeeccCCCCCceEE
Confidence 45789999999999999999999999999999999999531 111 1111222232222 2111 112244
Q ss_pred ccccccccccccc--------------------cceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeee
Q 002962 129 IPMFDYQQKNRIG--------------------SKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQ 188 (862)
Q Consensus 129 ~p~~~~~~~~~~~--------------------~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~ 188 (862)
.+.++...+-+.. ..........-+|+||-.+.. .+.+.+|++|||+++.+.+.+|+..
T Consensus 362 ~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigt-vV~P~AdlKIfL~As~evRa~RR~~ 440 (512)
T PRK13477 362 INGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGT-HVFPDAELKIFLTASVEERARRRAL 440 (512)
T ss_pred eCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEccccee-EEcCCCCEEEEEECCHHHHHHHHHh
Confidence 4444332211110 000001122348999987653 3345689999999999999998876
Q ss_pred cccCC---ccchhhHHh----hhhhhhhcccCCCccc-ceeecCCcc
Q 002962 189 YDIGD---SCSLDSLID----SIFPLFRKHIEPDLHH-AQIRINNRF 227 (862)
Q Consensus 189 RD~~~---~~~~e~~~~----~~~p~~~k~Iep~~~~-ADiII~N~~ 227 (862)
+.... ..+.+++.+ +......+.+.|-... ++++|+++.
T Consensus 441 ~l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs~ 487 (512)
T PRK13477 441 DLQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELITDG 487 (512)
T ss_pred hhhhCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEECCC
Confidence 53211 112333332 2233344455565554 668887774
No 108
>PRK06762 hypothetical protein; Provisional
Probab=98.79 E-value=1e-08 Score=102.62 Aligned_cols=134 Identities=18% Similarity=0.123 Sum_probs=81.4
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce--eeEEEeecccccccC-CCCCCCccchHHHHHhhhhhhcCCCcccccccccccc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVI--GCTLISMENYRVGVD-EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L--g~~vI~~D~~~~~~~-~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~ 138 (862)
+.+|+|+|++||||||+|+.|++.+ ++.+++.|.+++.+. ..+.++....+.+.+.....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~~~~~~~~~~~~~~~~~----------------- 64 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGPGNLSIDLIEQLVRYG----------------- 64 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCCCCCcCHHHHHHHHHHH-----------------
Confidence 4689999999999999999999988 578899999876432 22233333333322221110
Q ss_pred ccccceeeccCceEEEEcccchhh------Hhhhhcc---ceEEEEEeceeeeeeeeeecccCCccchhhHHhhhhhhhh
Q 002962 139 RIGSKVIKGASSGVVIVDGTYALD------ARLRSLL---DIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFR 209 (862)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~------~~l~~~~---D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~~~~p~~~ 209 (862)
......||+|+.+.-. ..+...+ ...||+++|.+++++|...|..... ..++.++.++...+
T Consensus 65 --------~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~-~~~~~l~~~~~~~~ 135 (166)
T PRK06762 65 --------LGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHE-FGEDDMRRWWNPHD 135 (166)
T ss_pred --------HhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhccccccc-CCHHHHHHHHhhcC
Confidence 1123578888886422 1222222 3789999999999999988874322 22344443332222
Q ss_pred cccCCCcccceeecCCc
Q 002962 210 KHIEPDLHHAQIRINNR 226 (862)
Q Consensus 210 k~Iep~~~~ADiII~N~ 226 (862)
. + ..|+.+++++
T Consensus 136 ~---~--~~~~~~~~~~ 147 (166)
T PRK06762 136 T---L--GVIGETIFTD 147 (166)
T ss_pred C---c--CCCCeEEecC
Confidence 2 1 2356666555
No 109
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.79 E-value=9.9e-10 Score=115.18 Aligned_cols=166 Identities=17% Similarity=0.193 Sum_probs=94.2
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccC----CCCCCCccchHHHHHhhhhh--------------hcC
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD----EGNDLDSIDFDALVQNLQDL--------------TEG 124 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~----~~~~~~s~d~~~l~~~L~~l--------------~~~ 124 (862)
++|+|+||+||||||+++.|++.+|+.+++++++|+... ..+.+ .-+...+...+..+ ..+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVD-LTSEDALAELISHLDIRFIPTNGEVEVFLNG 81 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCC-CCCHHHHHHHHHhCCCEEecCCCceeEEEcC
Confidence 689999999999999999999999999999999987431 11110 01222222211111 000
Q ss_pred CC-----------------ccccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeee
Q 002962 125 KD-----------------TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKV 187 (862)
Q Consensus 125 ~~-----------------i~~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i 187 (862)
+. ..+|.+.......... .....-+|+||..+... +.+..|++||++++.+.+.+|+.
T Consensus 82 ~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr~----~a~~~~~Vi~Gr~~~~~-v~~~a~~~ifl~a~~~~Ra~Rr~ 156 (217)
T TIGR00017 82 EDVSEAIRTQEVANAASKVAVFPKVREALLKRQQA----LAKNDGIIADGRDIGTV-VFPNAEVKIFLDASVEERAKRRY 156 (217)
T ss_pred cchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHHH----HhhcCCEEEEEcCcceE-EeCCCCEEEEEECCHHHHHHHHH
Confidence 00 1122222222221111 11223599999975432 33448999999999999999998
Q ss_pred ecccCC--ccchhhHHhhhhh----hhhcccCCCcccceeecCCccchhhHhh
Q 002962 188 QYDIGD--SCSLDSLIDSIFP----LFRKHIEPDLHHAQIRINNRFVSSFREA 234 (862)
Q Consensus 188 ~RD~~~--~~~~e~~~~~~~p----~~~k~Iep~~~~ADiII~N~~~~~~~~~ 234 (862)
.|.... ..+.+++.+.+.. ...+...|.....|.++.++...++++-
T Consensus 157 ~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~Idts~l~ieev 209 (217)
T TIGR00017 157 KQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLKKADDALYLDTSNLSIDEV 209 (217)
T ss_pred HHHhccCCCCCHHHHHHHHHHHHhcccccccCcccCCCCeEEEECCCCCHHHH
Confidence 887543 2344555444322 2334445555555555444434444443
No 110
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.78 E-value=1.1e-09 Score=127.23 Aligned_cols=132 Identities=17% Similarity=0.184 Sum_probs=91.5
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccccc----cccCccCCCcccchhhhcccchhhc-----CCccc
Q 002962 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ----VKDFKYDDFSSLDLSLLSKNISDIR-----NGRRT 586 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~----~~~~n~~~p~t~D~~lL~~~L~~L~-----~g~~v 586 (862)
++.+|+|+||+||||||+|+.|++.||..+++.|+||+... ...++++++.++ ..+.+.+.-.. .+..+
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~~~~i 360 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEAL--AELLSDLKIELKPSSGSPQRV 360 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHH--HHHHhcCCeeeccCCCCCceE
Confidence 56899999999999999999999999999999999999732 123455555543 34444443332 23468
Q ss_pred cceeeecccccccCcee-----ee--------------ecccceeEEEcceecccHhhhhccceeeeeecccchheehee
Q 002962 587 KVPIFDLETGARSGFKE-----LE--------------VSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRV 647 (862)
Q Consensus 587 ~~P~yd~~~~~r~~~~~-----~~--------------~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri 647 (862)
.+|.||.+.+-|.+.-. +. ......-+|+||--++.--+ +..|++||++++.+.+..||.
T Consensus 361 ~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigtvV~-P~AdlKIfL~As~evRa~RR~ 439 (512)
T PRK13477 361 WINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGTHVF-PDAELKIFLTASVEERARRRA 439 (512)
T ss_pred EeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEcccceeEEc-CCCCEEEEEECCHHHHHHHHH
Confidence 88888888655442100 00 00112348999998876322 346999999999999999987
Q ss_pred ecc
Q 002962 648 QRD 650 (862)
Q Consensus 648 ~Rd 650 (862)
.+.
T Consensus 440 ~~l 442 (512)
T PRK13477 440 LDL 442 (512)
T ss_pred hhh
Confidence 653
No 111
>PRK07261 topology modulation protein; Provisional
Probab=98.74 E-value=6.3e-09 Score=105.16 Aligned_cols=99 Identities=20% Similarity=0.283 Sum_probs=71.6
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccccccccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~~~ 143 (862)
.|+|+|++||||||+|+.|++.+|.++++.|.++.... +. ..+.+.+...+..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-~~---~~~~~~~~~~~~~~~--------------------- 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-WQ---ERDDDDMIADISNFL--------------------- 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-cc---cCCHHHHHHHHHHHH---------------------
Confidence 48999999999999999999999999999999864211 11 112222333322211
Q ss_pred eeeccCceEEEEcccchhh--HhhhhccceEEEEEeceeeeeeeeeecccC
Q 002962 144 VIKGASSGVVIVDGTYALD--ARLRSLLDIRVAVVGGVHFSLISKVQYDIG 192 (862)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~--~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~ 192 (862)
.... +|+||.+.-. ....+.+|.+||++.|...++.|.++|...
T Consensus 57 ----~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~ 102 (171)
T PRK07261 57 ----LKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred ----hCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 1122 8999999752 444567999999999999999999999754
No 112
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.74 E-value=1.3e-09 Score=106.18 Aligned_cols=116 Identities=26% Similarity=0.347 Sum_probs=84.3
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceeeecccccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~~~~r 598 (862)
+|.|+|++||||||+|+.|++.+|..++|.-.+|+...... + +++..+.+ + .-..|.+|+....|
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~-g------msl~ef~~----~----AE~~p~iD~~iD~r 66 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARER-G------MSLEEFSR----Y----AEEDPEIDKEIDRR 66 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHc-C------CCHHHHHH----H----HhcCchhhHHHHHH
Confidence 68999999999999999999999999999999998622111 1 11211111 1 12467778777665
Q ss_pred cCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeeccccccc
Q 002962 599 SGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMG 655 (862)
Q Consensus 599 ~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg 655 (862)
.- .. .. .+-+|+||-+++|-. +...|++||+.+|.++|..|-..|+.....
T Consensus 67 q~--e~--a~-~~nvVlegrLA~Wi~-k~~adlkI~L~Apl~vRa~Ria~REgi~~~ 117 (179)
T COG1102 67 QK--EL--AK-EGNVVLEGRLAGWIV-REYADLKIWLKAPLEVRAERIAKREGIDVD 117 (179)
T ss_pred HH--HH--HH-cCCeEEhhhhHHHHh-ccccceEEEEeCcHHHHHHHHHHhcCCCHH
Confidence 52 11 12 577899999998822 267899999999999999999999855433
No 113
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.73 E-value=8.7e-10 Score=107.38 Aligned_cols=142 Identities=18% Similarity=0.223 Sum_probs=84.7
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceeeecccccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~~~~r 598 (862)
+|.|+|++||||||+|+.|++.++..++++|....... ....-..+ +...+.+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~-~~~~~~~~---~~~~i~~~l~~~------------------ 58 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV-GKLASEVA---AIPEVRKALDER------------------ 58 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHH-HHHHHHhc---ccHhHHHHHHHH------------------
Confidence 58899999999999999999999999999995543210 00000000 000111111110
Q ss_pred cCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeecccccc-cccccc--cceehhhhhhhhhcc
Q 002962 599 SGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM-GCFMSQ--NDIMMTVFPMFQQHI 675 (862)
Q Consensus 599 ~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~r-g~~~~~--~~~~~~v~p~~~~~I 675 (862)
. ... ....-+|+||+++.+- +.+.+|+.||+++|.+.+..|+..|+...+ |.+.+. ..+...-.+.+..|+
T Consensus 59 ~--~~~---~~~~~~Vidg~~~~~~-~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 132 (147)
T cd02020 59 Q--REL---AKKPGIVLEGRDIGTV-VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYV 132 (147)
T ss_pred H--HHH---hhCCCEEEEeeeeeeE-EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhccc
Confidence 0 000 1124588899987652 245689999999999999999999873322 333332 233333455667777
Q ss_pred cccc-ccccccccc
Q 002962 676 EPHL-VHAHLKIRN 688 (862)
Q Consensus 676 ~p~~-~~ADivI~n 688 (862)
.+.. ..-|++|+.
T Consensus 133 ~~~~~~~~dl~i~~ 146 (147)
T cd02020 133 APLKLAEDAIVIDT 146 (147)
T ss_pred ccccCCCCcEEEeC
Confidence 7765 344566653
No 114
>PRK08118 topology modulation protein; Reviewed
Probab=98.70 E-value=4.8e-09 Score=105.61 Aligned_cols=104 Identities=17% Similarity=0.154 Sum_probs=72.7
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceeeecccccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~~~~r 598 (862)
-|.|.||+||||||+|+.|++.++..++++|+.++.. +|.... -+...+.+..+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~-----~w~~~~---~~~~~~~~~~~------------------ 56 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP-----NWEGVP---KEEQITVQNEL------------------ 56 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc-----CCcCCC---HHHHHHHHHHH------------------
Confidence 4778999999999999999999999999999998631 111100 00111111110
Q ss_pred cCceeeeecccceeEEEcceeccc-Hhhhhccceeeeeecccchheeheeeccccccccc
Q 002962 599 SGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCF 657 (862)
Q Consensus 599 ~~~~~~~~~~~~~vVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~ 657 (862)
.. .+-+|+||.+... +...+.+|..||+++|.+.++.|.+.|....+|..
T Consensus 57 --------~~-~~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~g~~ 107 (167)
T PRK08118 57 --------VK-EDEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYRAFKRRVQYRGKT 107 (167)
T ss_pred --------hc-CCCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHHHcCCC
Confidence 01 1347899988743 44456799999999999999999999977655543
No 115
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.70 E-value=6.5e-09 Score=126.08 Aligned_cols=190 Identities=12% Similarity=0.101 Sum_probs=115.7
Q ss_pred ceehhhHHHHHHHHhc-CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccC---CCCCCCccchHHHHHhhh
Q 002962 44 GYYLLVKSIQELREKK-GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD---EGNDLDSIDFDALVQNLQ 119 (862)
Q Consensus 44 ~y~~l~~~i~~~~~~~-~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~---~~~~~~s~d~~~l~~~L~ 119 (862)
.|....+.+..+.... .+..+|+|.||+||||||+|+.|++.||..++++|.+|+... .....+..|.+.+.+.+.
T Consensus 423 syP~F~~~l~~Lg~~~~~~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (661)
T PRK11860 423 TFPDYFEALFSVAQADADRVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALAR 502 (661)
T ss_pred CCCChHHHHHHhcCCcccCcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHh
Confidence 6666777776665433 235689999999999999999999999999999999998531 111222234444544433
Q ss_pred hhhc----------CCCcc-----------------ccccccccccccccceeeccCceEEEEcccchhhHhhhhccceE
Q 002962 120 DLTE----------GKDTL-----------------IPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIR 172 (862)
Q Consensus 120 ~l~~----------~~~i~-----------------~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~ 172 (862)
.+.. ++++. +|.++........ ......-+|+||--+.. .+.+.+|++
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr----~~~~~~~~v~eGRdigt-vv~p~a~~k 577 (661)
T PRK11860 503 GLPVRFEGDRIWLGGEDVTDAIRTEAAGMGASRVSALPAVRAALLALQR----SFRRLPGLVADGRDMGT-VIFPDAALK 577 (661)
T ss_pred cCCeeecCCeEEECCeEchhhhCcHHHHHHHHHHhCCHHHHHHHHHHHH----HHhhCCCEEEECCCCcc-EECCCCCeE
Confidence 2211 11111 1111111111111 01122348999988763 445669999
Q ss_pred EEEEeceeeeeeeeeecccCCc--cchhhHH----hhhhhhhhcccCCCcccceeecCCccchhhHhhhhhh
Q 002962 173 VAVVGGVHFSLISKVQYDIGDS--CSLDSLI----DSIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKL 238 (862)
Q Consensus 173 I~Vda~~~~~l~R~i~RD~~~~--~~~e~~~----~~~~p~~~k~Iep~~~~ADiII~N~~~~~~~~~~y~l 238 (862)
||++|+.+.|.+||.+...... .+.+++. ++-.....+.+.|.+...|.|+.++...++++-+-++
T Consensus 578 ifl~a~~~~Ra~Rr~~~~~~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~~~~~~v~~~i 649 (661)
T PRK11860 578 VFLTASAEARAERRYKQLISKGISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNSDLTIEQAVAQV 649 (661)
T ss_pred EEEECChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCCCCHHHHHHHH
Confidence 9999999999999977432211 2343333 3445566677888887777666555466666554433
No 116
>cd07891 CYTH-like_CthTTM-like_1 CYTH-like Clostridium thermocellum TTM-like subgroup 1. This subgroup contains the triphosphate tunnel metalloenzyme (TTM) from Clostridium thermocellum (CthTTM) and similar proteins. These are found primarily in bacteria. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. These enzymes are members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily, which have a unique active site located within an eight-stranded beta barrel.
Probab=98.69 E-value=1.9e-08 Score=99.16 Aligned_cols=85 Identities=15% Similarity=0.096 Sum_probs=68.9
Q ss_pred chhhhhcccceeeeecceeEEEeeCceeeeccceeeccccceeeec---eeccchhccccEEEEEEeeceeeEeeCeeEE
Q 002962 273 ATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---MTLGGLLDLGYSVVASYKRASTYVVYGNLSV 349 (862)
Q Consensus 273 ~~~~al~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v---~~~~~L~~LGy~~~~~~~K~R~~~~~~~~~v 349 (862)
..++++ |||..++++.||||||+.+ ++|.|+|+.| ....++. +.....++|.|..|.+++..+
T Consensus 32 ~~~~~l-----RiR~~~~~~~lT~K~~~~~------~~R~E~E~~i~~~~~~~l~~---~~~~~~I~K~R~~~~~~~~~~ 97 (148)
T cd07891 32 DPERTV-----RVRIAGDRAYLTIKGPTNG------LSRYEFEYEIPLADAEELLA---LCEGPVIEKTRYRVPHGGHTW 97 (148)
T ss_pred CCCcEE-----EEEEeCCEEEEEEEeCCCC------ceEEEEEEeCCHHHHHHHHh---cCCCCeEEEEEEEEEeCCEEE
Confidence 344566 9999999999999998643 5789999988 2233333 566789999999999999999
Q ss_pred eeehhccccce--EEEEEcCCccc
Q 002962 350 SFETIDTLDET--FMVLRGTNRKT 371 (862)
Q Consensus 350 ~lD~v~~lG~~--FvEiE~~~~~~ 371 (862)
+||.++|+|.+ |+|||..++++
T Consensus 98 ~lD~~~g~~~gL~~~EiE~~~e~~ 121 (148)
T cd07891 98 EVDVFHGENAGLVVAEIELPSEDE 121 (148)
T ss_pred EEEEEcCCCCceEEEEEEcCCccc
Confidence 99999999874 99999986654
No 117
>PRK07261 topology modulation protein; Provisional
Probab=98.67 E-value=7.7e-09 Score=104.52 Aligned_cols=105 Identities=24% Similarity=0.264 Sum_probs=75.8
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceeeecccccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~~~~r 598 (862)
.|+|.|++||||||||+.|++.++..++++|++++... +.. .+.+.+.+.+..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----~~~---~~~~~~~~~~~~~------------------ 55 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----WQE---RDDDDMIADISNF------------------ 55 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----ccc---CCHHHHHHHHHHH------------------
Confidence 47899999999999999999999999999999886321 111 1111222211110
Q ss_pred cCceeeeecccceeEEEcceecc-c-Hhhhhccceeeeeecccchheeheeecccccccccc
Q 002962 599 SGFKELEVSEDCGVIIFEGVYAL-H-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM 658 (862)
Q Consensus 599 ~~~~~~~~~~~~~vVIvEG~~~~-~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~ 658 (862)
..... +|+||.|.- . +...+.+|..||++.|...++.|.+.|+...+|...
T Consensus 56 --------~~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~rg~~r 108 (171)
T PRK07261 56 --------LLKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKYRGKTR 108 (171)
T ss_pred --------HhCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHHcCCcC
Confidence 11123 899999975 2 555568999999999999999999999987777654
No 118
>cd07756 CYTH-like_Pase_CHAD Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain. This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosp
Probab=98.66 E-value=3.2e-08 Score=102.19 Aligned_cols=125 Identities=13% Similarity=0.065 Sum_probs=93.5
Q ss_pred CCcccccceeeeeccCCCchhhhhcccceeeeecceeEEEeeCceeeeccceeeccccceeeec----e---------ec
Q 002962 255 GNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----M---------TL 321 (862)
Q Consensus 255 ~~~~e~d~Y~~~~~r~~~~~~~al~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~---------~~ 321 (862)
....+++.||+.|.++++..+.++ |||+.+++..+|+|+|....+++ +.|.|+|+.+ . +.
T Consensus 31 ~~~~l~~~YfDTpd~~L~~~~~aL-----RiR~~~~~~~~TlK~~~~~~~g~--~~R~E~e~~l~~~~~~l~~~~~~~~~ 103 (197)
T cd07756 31 QTRRLHNTYFDTPDLALRRAGIAL-----RVRREGGQWVQTLKTAGSVVGGL--HQRPEWEVPLPGPAPDLDLASILPDG 103 (197)
T ss_pred ceeeeeeeeeeCcChHHHhCCCEE-----EEEeeCCeEEEEEeeCCcCCCCc--ccceeEcccCCCCCcCcchhhcCCcc
Confidence 345688999999999999999999 99998999999999886444554 7999999999 1 55
Q ss_pred cchhccc----cEEEEEEeeceeeEeeC----eeEEeeeh--hc--cccceEEEEEcC----Cccchhhhh----hhccc
Q 002962 322 GGLLDLG----YSVVASYKRASTYVVYG----NLSVSFET--ID--TLDETFMVLRGT----NRKTVGAEA----LRMGI 381 (862)
Q Consensus 322 ~~L~~LG----y~~~~~~~K~R~~~~~~----~~~v~lD~--v~--~lG~~FvEiE~~----~~~~v~~~~----~~Lgl 381 (862)
.++.+++ +.|++++++.|+.|.+. .++|++|. |. +--.|.-|||.. +.+.+.++| ...|+
T Consensus 104 ~~~~~l~~~~~L~pvf~t~~~R~~~~l~~~~~~iEvalD~G~i~a~~~~~~i~EiElELk~G~~~~L~~la~~l~~~~~l 183 (197)
T cd07756 104 ELLEALAALAALVPLFTTDFERTVWLLRLGGSEIEVALDQGEIRAGDRSEPICEIELELKSGDPAALFALARRLAERLPL 183 (197)
T ss_pred cCHhhhhccCCceEEEEEEEEEEEEEEcCCCcEEEEEEeeeEEEeCCCccceEeEEEEecCCCHHHHHHHHHHHHHhCCc
Confidence 6778884 99999999999999984 49999999 43 112346666653 334444444 44555
Q ss_pred cCCcc
Q 002962 382 NGPWI 386 (862)
Q Consensus 382 ~~~~~ 386 (862)
.....
T Consensus 184 ~~~~~ 188 (197)
T cd07756 184 RLSNR 188 (197)
T ss_pred cCCCc
Confidence 44433
No 119
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.66 E-value=4.3e-09 Score=111.03 Aligned_cols=168 Identities=18% Similarity=0.192 Sum_probs=92.3
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCC---CCCCCccchHHHHHhhhhhhc--------------C
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE---GNDLDSIDFDALVQNLQDLTE--------------G 124 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~---~~~~~s~d~~~l~~~L~~l~~--------------~ 124 (862)
+.+|+|+|++||||||+|+.|++.+|+.++++|.+|+.... ....+..+.+.+.+.+..+.. +
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVDLEDEEALVALAAHLDISFESDPGGQRVFLNG 83 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCCCCCHHHHHHHHhcCCeEEecCCCcceEEECC
Confidence 47899999999999999999999999999999999885221 111111233333332221110 0
Q ss_pred CCcc-----------------ccccccccccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeee
Q 002962 125 KDTL-----------------IPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKV 187 (862)
Q Consensus 125 ~~i~-----------------~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i 187 (862)
..+. .|..+...... ........-+|++|..+.. .+.+.++++|||++|.+.+.+|+.
T Consensus 84 ~~i~~~lr~~~i~~~~s~~a~~~~ir~~l~~~----q~~ia~~~~~Vi~GR~~~~-~vl~~a~~~ifl~a~~e~R~~Rr~ 158 (225)
T PRK00023 84 EDVTDEIRTEEVGNAASKVAAIPEVREALVER----QRAFAREPGLVMDGRDIGT-VVFPDAELKIFLTASAEERAERRY 158 (225)
T ss_pred cchHHhhChHHHHHHHHHHcCCHHHHHHHHHH----HHHHhhCCCEEEEecChhe-EEeCCCCEEEEEECCHHHHHHHHH
Confidence 0000 00010000000 0011123358899986433 233448999999999998877776
Q ss_pred ecccCC--ccchhhHHh----hhhhhhhcccCCCcccce-eecCCccchhhHhhh
Q 002962 188 QYDIGD--SCSLDSLID----SIFPLFRKHIEPDLHHAQ-IRINNRFVSSFREAI 235 (862)
Q Consensus 188 ~RD~~~--~~~~e~~~~----~~~p~~~k~Iep~~~~AD-iII~N~~~~~~~~~~ 235 (862)
++.... ..+.+++.+ +-.....+++.|-...+| ++|+++ ..++++..
T Consensus 159 ~~~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~IDTs-~l~~ee~v 212 (225)
T PRK00023 159 KELQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALLLDTS-GLSIEEVV 212 (225)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEEEECC-CCCHHHHH
Confidence 664221 123333322 222233445677677776 555555 44444433
No 120
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.64 E-value=2e-08 Score=101.60 Aligned_cols=144 Identities=17% Similarity=0.135 Sum_probs=81.0
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhcee-----eEEEeecccccccCCCCC--CCccchHHHHHhhhhhhcCCCcccccc
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDEGND--LDSIDFDALVQNLQDLTEGKDTLIPMF 132 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~~~~~--~~s~d~~~l~~~L~~l~~~~~i~~p~~ 132 (862)
..+.+|.++|++||||||+|+.|++.++ +.+++.|.++..+...+. ....+.......+....
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~~~~~~l~~~l---------- 74 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYGYDKQSRIEMALKRAKLAKFL---------- 74 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHH----------
Confidence 3567899999999999999999998875 778888887654332211 00011111111111100
Q ss_pred ccccccccccceeeccCceEEEEcccchhhH---hhhhc--cceEEEEEeceeeeeeeeeec--ccCCccchhhHHhhhh
Q 002962 133 DYQQKNRIGSKVIKGASSGVVIVDGTYALDA---RLRSL--LDIRVAVVGGVHFSLISKVQY--DIGDSCSLDSLIDSIF 205 (862)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~---~l~~~--~D~~I~Vda~~~~~l~R~i~R--D~~~~~~~e~~~~~~~ 205 (862)
.....+||++|...+.. ..+.. -++.||++++.++..+|...+ .........+++..+.
T Consensus 75 --------------~~~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~ 140 (176)
T PRK05541 75 --------------ADQGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDI 140 (176)
T ss_pred --------------HhCCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCC
Confidence 01234677777765531 11111 146899999999877775321 1111123334444555
Q ss_pred hhhhcccCCCcccceeecCCccchhhHhh
Q 002962 206 PLFRKHIEPDLHHAQIRINNRFVSSFREA 234 (862)
Q Consensus 206 p~~~k~Iep~~~~ADiII~N~~~~~~~~~ 234 (862)
|.+.+ .||++|+|+...+.++.
T Consensus 141 ~~~~~-------~Ad~vI~~~~~~~~~~~ 162 (176)
T PRK05541 141 PFDEP-------KADLVIDNSCRTSLDEK 162 (176)
T ss_pred cccCC-------CCCEEEeCCCCCCHHHH
Confidence 65544 48999999843344443
No 121
>PRK08356 hypothetical protein; Provisional
Probab=98.61 E-value=1.8e-08 Score=103.89 Aligned_cols=151 Identities=17% Similarity=0.175 Sum_probs=81.8
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCC-CCCcc----chH------HHHHh--hhhhhcCCCcc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-DLDSI----DFD------ALVQN--LQDLTEGKDTL 128 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-~~~s~----d~~------~l~~~--L~~l~~~~~i~ 128 (862)
.++|+|+|++||||||+|+.|++ +|+.+|++.+..+...... ....| .+. .+.+. +.....|.++.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~ 83 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDIL 83 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHH
Confidence 46799999999999999999975 8999999998654322111 11111 111 11110 00000111110
Q ss_pred ccccccccccccccceeeccCceEEEEcccchhh--HhhhhccceEEEEEeceeeeeeeeeecccCCcc---chhhHHh-
Q 002962 129 IPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD--ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC---SLDSLID- 202 (862)
Q Consensus 129 ~p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~--~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~---~~e~~~~- 202 (862)
... .-+.. .....++++|.-... ..+......+|||+++.+.+.+|...|+...+. +.+++.+
T Consensus 84 ~~~----~~~~~-------~~~~~ividG~r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~ 152 (195)
T PRK08356 84 IRL----AVDKK-------RNCKNIAIDGVRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKF 152 (195)
T ss_pred HHH----HHHHh-------ccCCeEEEcCcCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 000 00000 111258999995554 233444468999999999888887778654331 3333322
Q ss_pred --hhhhhhhcccCCCcccceeecCCc
Q 002962 203 --SIFPLFRKHIEPDLHHAQIRINNR 226 (862)
Q Consensus 203 --~~~p~~~k~Iep~~~~ADiII~N~ 226 (862)
.+...+.. .-....||++|.|+
T Consensus 153 ~~~~~~l~~~--~~~~~~aD~vI~N~ 176 (195)
T PRK08356 153 DEWEEKLYHT--TKLKDKADFVIVNE 176 (195)
T ss_pred HHHHHHhhhh--hhHHHhCcEEEECC
Confidence 12222221 22357899999885
No 122
>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily. This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel
Probab=98.60 E-value=1.5e-07 Score=94.85 Aligned_cols=114 Identities=18% Similarity=0.280 Sum_probs=102.7
Q ss_pred CCCCeEEEEEec--ceeeEEeeccccCCCeeeccccceee--ehhhhhhhhhccceEEEEEEeeeeeeecCeEEEEeecc
Q 002962 747 TESDCIRVRICE--GRFALLIREPLREGNFIIQPKVDFDI--SISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHL 822 (862)
Q Consensus 747 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~f~~--~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (862)
..+.|||+|..+ |++.+.+..|..++.+..++..+++| .-.+.+.|.+|||...+.++.....|.-+++.|.+|++
T Consensus 45 ~~~~~LRiR~~~~~~~~~lT~K~~~~~~~~~~~~E~e~~v~~~~~~~~iL~~lg~~~~~~~~K~R~~~~~~~~~v~lD~~ 124 (169)
T cd07890 45 ATDEALRLRRMGDSGKTLLTYKGPKLDGGPKVREEIETEVADPEAMKEILERLGFGPVGRVKKEREIYLLGQTRVHLDRV 124 (169)
T ss_pred hCCCcEEEEEeCCCCcEEEEEECCCCCCCccceEEEEEecCCHHHHHHHHHHcCCceeEEEEEEEEEEEECCEEEEEEcc
Confidence 456799999998 99999999999998788888888888 36677788999999999999999999999999999999
Q ss_pred CCCCCCceEEecc------CHHHHhhccceeeecC-cccceehhcc
Q 002962 823 QDAPSPYLQIKGV------DKEAVAAAGSTLKLDG-SYTTKVMSLA 861 (862)
Q Consensus 823 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~ 861 (862)
++|+. |+.|-+. .++.+..++.+||+.+ .-+++||.|+
T Consensus 125 ~~lG~-f~EiE~~~~~~~~~~~~l~~~~~~lg~~~~~~~~~sy~~~ 169 (169)
T cd07890 125 EGLGD-FVEIEVVLEDIEEAEEGLGEAAELLGLLEYDEETLSYLEL 169 (169)
T ss_pred CCCCc-eEEEEEEeCCcHHHHHHHHHHHHHcCCCccCchhhhhhcC
Confidence 99987 9999998 8899999999999987 7899999875
No 123
>PRK13949 shikimate kinase; Provisional
Probab=98.59 E-value=2.2e-08 Score=101.09 Aligned_cols=36 Identities=28% Similarity=0.460 Sum_probs=33.1
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeeccccc
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (862)
.-|.|.|++||||||+++.|++.+|+.++++|.+..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~ 37 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIE 37 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHH
Confidence 359999999999999999999999999999998754
No 124
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=98.59 E-value=7.3e-08 Score=96.69 Aligned_cols=102 Identities=24% Similarity=0.307 Sum_probs=76.6
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhce--------eeEEEeecccccccC----------------CCCCCCccchHHHHH
Q 002962 61 GIVTVGIGGPSGSGKTSLAEKLASVI--------GCTLISMENYRVGVD----------------EGNDLDSIDFDALVQ 116 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L--------g~~vI~~D~~~~~~~----------------~~~~~~s~d~~~l~~ 116 (862)
-|++||++||.||||||++-+|-..+ .+..+|.||||.... .++-++++|+..+.+
T Consensus 30 ~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~npnN~Llq~RGlaGtHD~kll~e 109 (282)
T KOG2878|consen 30 VPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKNPNNALLQYRGLAGTHDLKLLVE 109 (282)
T ss_pred CcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceeeechhHHHHHhhCCCChhhccCCCCCcccHHHHHH
Confidence 48999999999999999998885433 367899999987432 246679999999999
Q ss_pred hhhhhhcCC----Ccccccccccccc----ccc-cceeeccCceEEEEcccchhh
Q 002962 117 NLQDLTEGK----DTLIPMFDYQQKN----RIG-SKVIKGASSGVVIVDGTYALD 162 (862)
Q Consensus 117 ~L~~l~~~~----~i~~p~~~~~~~~----~~~-~~~~~~~~~~vVIvEG~~l~~ 162 (862)
.|..+..+. .+.+|.|++.... |.. .+.....+..++|+||.++..
T Consensus 110 vLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF 164 (282)
T KOG2878|consen 110 VLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGF 164 (282)
T ss_pred HHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccc
Confidence 988876543 4888999986543 332 222333457899999999854
No 125
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.58 E-value=2.2e-08 Score=100.27 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=36.3
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeeccccccc
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV 100 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~ 100 (862)
+.+..|.|+|++||||||+|+.|++.+|+.+++.|.+....
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~ 42 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEAR 42 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHH
Confidence 34568999999999999999999999999999999986543
No 126
>cd07374 CYTH-like_Pase CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) Phosphatases. CYTH-like superfamily enzymes hydrolyze triphosphate-containing substrates and require metal cations as cofactors. They have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB), and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions.
Probab=98.57 E-value=1.2e-07 Score=95.90 Aligned_cols=102 Identities=8% Similarity=-0.025 Sum_probs=79.2
Q ss_pred cCCcccccceeeeeccCCCchhhhhcccceeeeec--ceeEEEeeCceeeeccceeeccccceeeec----eec------
Q 002962 254 QGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQS--GIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTL------ 321 (862)
Q Consensus 254 ~~~~~e~d~Y~~~~~r~~~~~~~al~~~~lRiR~~--~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~------ 321 (862)
.....+.+.||+.|.+. ..+.++ |||.. ++++.+|+|++.-. +.|.|+|+.| .+.
T Consensus 29 ~~~~~~~~~YfDT~d~~--l~~~~l-----rlR~r~~~~~~~~TlK~~~~~------~~r~E~e~~l~~~~~~~~~~~~~ 95 (174)
T cd07374 29 PETVQLRAIYFDTPDLR--LARAGL-----RLRRRTGGADAGWHLKLPGGI------SRRTEVRAPLGDAAAVAPLLLAA 95 (174)
T ss_pred ccceeeeeeEecCccch--hhhCCc-----EEEEEcCCCccEEEEEccCCC------CCceEEEeecCCccCCcccccch
Confidence 34567889999998873 333444 66644 55899999977532 4789999999 222
Q ss_pred ----cchhccccEEEEEEeeceeeEeeC-----eeEEeeehhcc-------ccceEEEEEcCCc
Q 002962 322 ----GGLLDLGYSVVASYKRASTYVVYG-----NLSVSFETIDT-------LDETFMVLRGTNR 369 (862)
Q Consensus 322 ----~~L~~LGy~~~~~~~K~R~~~~~~-----~~~v~lD~v~~-------lG~~FvEiE~~~~ 369 (862)
.++..+||.|++++.+.|++|.++ .++|+||.++. .++ ++|+|.++.
T Consensus 96 ~~~~~~~~~~~l~p~~~~~~~R~~~~l~~~~~~~iei~lD~~~~~~~~~~~~~~-e~E~El~~~ 158 (174)
T cd07374 96 ALVLAVTRGLPLRPVATIETTRTVYRLLDAGGVLAELDLDTVTARVLDGGGTQY-WREVEVELP 158 (174)
T ss_pred hheeeecCCCCceEEEEEEEEEEEEEecCCCceEEEEEecEEEEEEcCCCcceE-EEEEEEEEc
Confidence 456779999999999999999986 59999999987 677 999999843
No 127
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.54 E-value=3.5e-08 Score=120.77 Aligned_cols=175 Identities=16% Similarity=0.164 Sum_probs=104.9
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccC-----CCCCCC--ccchHHHHHhhhhhhcCCCccc------
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD-----EGNDLD--SIDFDALVQNLQDLTEGKDTLI------ 129 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~-----~~~~~~--s~d~~~l~~~L~~l~~~~~i~~------ 129 (862)
.+|+|+||+||||||+|+.||+.||+.+++++.+|+... .....+ ..|.+.+.+.+..+..+..+.+
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAVGEFFTGLHFDISVDPDS 81 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcchhhhhhhhhHHHHHHHHhCCcEEEecCCCC
Confidence 479999999999999999999999999999999988522 111121 2333444444433322111111
Q ss_pred -----------------------------cccccccccccccceeeccC-------ceEEEEcccchhhHhhhhccceEE
Q 002962 130 -----------------------------PMFDYQQKNRIGSKVIKGAS-------SGVVIVDGTYALDARLRSLLDIRV 173 (862)
Q Consensus 130 -----------------------------p~~~~~~~~~~~~~~~~~~~-------~~vVIvEG~~l~~~~l~~~~D~~I 173 (862)
|.+......... ......+ ..-+|+||--+.. .+.+.+|++|
T Consensus 82 ~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~qr-~~~~~~~~~~~~~~~~~~v~eGRdigt-vv~p~a~~K~ 159 (712)
T PRK09518 82 PGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQR-AYIAREASADSFSGGLGIVAEGRDITT-VVAPDAEVRI 159 (712)
T ss_pred cEEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHHHH-HHHhhcCccccccccCcEEEecCccce-EEecCCCeEE
Confidence 111100000000 0000011 1259999998864 4446689999
Q ss_pred EEEeceeeeeeeeeecccCCc--cchhhHHhhhhhhhhcccCCCcccceeecCCccchhhHhhhhhhcc
Q 002962 174 AVVGGVHFSLISKVQYDIGDS--CSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKC 240 (862)
Q Consensus 174 ~Vda~~~~~l~R~i~RD~~~~--~~~e~~~~~~~p~~~k~Iep~~~~ADiII~N~~~~~~~~~~y~lk~ 240 (862)
|++|+.+.|.+||..++.... .-.+++.++-.... +.+.|.....|.++.++...++++-.-++..
T Consensus 160 ~l~A~~~~Ra~Rr~~~~~~~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~da~~idts~~~~~~v~~~i~~ 227 (712)
T PRK09518 160 LLTAREEVRQARRSGQDRSETPGVVLEDVAARDEADS-KVTSFLSAADGVTTLDNSDLDFDETLDLLIG 227 (712)
T ss_pred EEECCHHHHHHHHHHhhhcCCHHHHHHHHHHHhhhcc-cccCCCCCCCCeEEEECCCCCHHHHHHHHHH
Confidence 999999999999998875411 12233333444555 7788876666666655556666666555554
No 128
>PLN02200 adenylate kinase family protein
Probab=98.53 E-value=3e-08 Score=105.24 Aligned_cols=120 Identities=13% Similarity=0.079 Sum_probs=71.9
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccccc
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~ 139 (862)
+.+++|.|+|++||||||+|+.|++.+|+..|+++++.+.......+ +...+... +..|..+.-..........
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~---~~~~i~~~---~~~G~~vp~e~~~~~l~~~ 114 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSE---HGAMILNT---IKEGKIVPSEVTVKLIQKE 114 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccCh---hHHHHHHH---HHcCCCCcHHHHHHHHHHH
Confidence 45689999999999999999999999999999998876532221111 11112222 2223221111110001111
Q ss_pred cccceeeccCceEEEEcccchhh-------HhhhhccceEEEEEeceeeeeeeeeecc
Q 002962 140 IGSKVIKGASSGVVIVDGTYALD-------ARLRSLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l~~-------~~l~~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
... ....-+|+||..... ..+....|.+|+++++.++.+.|...|.
T Consensus 115 l~~-----~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~ 167 (234)
T PLN02200 115 MES-----SDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRN 167 (234)
T ss_pred Hhc-----CCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCc
Confidence 110 112348999964322 1122357899999999999989888875
No 129
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.51 E-value=9.9e-09 Score=102.76 Aligned_cols=113 Identities=22% Similarity=0.285 Sum_probs=68.8
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceeeecccccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~~~~r 598 (862)
+|+|+|++||||||+|+.|++.+|..+++.|++++.... ..+. +...+.... .. .|.++.....+
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~-~~g~------~~~~~~~~~---~~-----~~~~~~~~~~~ 66 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAA-KMGL------DLIEFLNYA---EE-----NPEIDKKIDRR 66 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHH-HcCC------CHHHHHHHH---hc-----CcHHHHHHHHH
Confidence 799999999999999999999999999999988764211 1110 000000000 00 01000000000
Q ss_pred cCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeeccc
Q 002962 599 SGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDK 651 (862)
Q Consensus 599 ~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (862)
. .......+.+|+||.+..+ .+.+.+|+.|||++|.+.+..|...|+.
T Consensus 67 i----~~~~~~~~~~Vi~g~~~~~-~~~~~~d~~v~v~a~~~~r~~R~~~R~~ 114 (171)
T TIGR02173 67 I----HEIALKEKNVVLESRLAGW-IVREYADVKIWLKAPLEVRARRIAKREG 114 (171)
T ss_pred H----HHHHhcCCCEEEEecccce-eecCCcCEEEEEECCHHHHHHHHHHccC
Confidence 0 0011123467789988754 1245678999999999999999888864
No 130
>PRK00625 shikimate kinase; Provisional
Probab=98.49 E-value=4.5e-08 Score=99.12 Aligned_cols=142 Identities=14% Similarity=0.120 Sum_probs=77.6
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccccccccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~~~ 143 (862)
.|.|+|.+||||||+++.|++.+|..++++|.+...........+ ...+.+. .|++ .|........ ..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~--i~eif~~-----~Ge~----~fr~~E~~~l-~~ 69 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSS--PKEIYQA-----YGEE----GFCREEFLAL-TS 69 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCC--HHHHHHH-----HCHH----HHHHHHHHHH-HH
Confidence 489999999999999999999999999999997553222210000 0000000 0000 0000000000 00
Q ss_pred eeeccCceEEEEcccchhhHhhhh---ccceEEEEEeceeeeeeeeeecccCCc----cchhhHHhhhhhhhhcccCCCc
Q 002962 144 VIKGASSGVVIVDGTYALDARLRS---LLDIRVAVVGGVHFSLISKVQYDIGDS----CSLDSLIDSIFPLFRKHIEPDL 216 (862)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~~~l~~---~~D~~I~Vda~~~~~l~R~i~RD~~~~----~~~e~~~~~~~p~~~k~Iep~~ 216 (862)
. . ....++...|.....+.... ....+||++++.+...+|...|..... ...++++++..|.|++
T Consensus 70 l-~-~~~~VIs~GGg~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y~~------ 141 (173)
T PRK00625 70 L-P-VIPSIVALGGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRIDRMRS------ 141 (173)
T ss_pred h-c-cCCeEEECCCCccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHHHHH------
Confidence 0 0 11223334444443333222 236899999999988888777764332 2334444555666654
Q ss_pred ccceeecCCc
Q 002962 217 HHAQIRINNR 226 (862)
Q Consensus 217 ~~ADiII~N~ 226 (862)
.||++|+.+
T Consensus 142 -~ad~~i~~~ 150 (173)
T PRK00625 142 -IADYIFSLD 150 (173)
T ss_pred -HCCEEEeCC
Confidence 789888655
No 131
>PRK01184 hypothetical protein; Provisional
Probab=98.47 E-value=2.7e-08 Score=101.39 Aligned_cols=118 Identities=22% Similarity=0.302 Sum_probs=68.7
Q ss_pred EEEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcC--Cccccceeeeccc
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRN--GRRTKVPIFDLET 595 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~--g~~v~~P~yd~~~ 595 (862)
.+|+|+|++||||||+++ +++.+|+.++++||..+..-.. .+...+. +.+.+....++. +..+ +....
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~-~~~~~~~----~~~g~~~~~~~~~~~~~~----~~~~~ 71 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKK-RGLEPTD----ENIGKVAIDLRKELGMDA----VAKRT 71 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHH-cCCCCCc----HHHHHHHHHHHHHHChHH----HHHHH
Confidence 589999999999999987 5667899999999887653111 0111110 011111111110 0000 00001
Q ss_pred ccccCceeeeecccceeEEEcceeccc--Hhhhhccc---eeeeeecccchheeheeeccc
Q 002962 596 GARSGFKELEVSEDCGVIIFEGVYALH--PEIRKSLD---LWIAVVGGVHSHLISRVQRDK 651 (862)
Q Consensus 596 ~~r~~~~~~~~~~~~~vVIvEG~~~~~--~~l~~~~D---~~I~v~~~~d~rl~Rri~Rd~ 651 (862)
+... . ..+..++|++|+.... ..+++.++ ..|+++++.+.++.|...|+.
T Consensus 72 ~~~i-----~-~~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~ 126 (184)
T PRK01184 72 VPKI-----R-EKGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGR 126 (184)
T ss_pred HHHH-----H-hcCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCC
Confidence 1111 0 0235789999984332 34555555 899999999999999887763
No 132
>PRK03839 putative kinase; Provisional
Probab=98.47 E-value=7.3e-08 Score=97.91 Aligned_cols=97 Identities=22% Similarity=0.319 Sum_probs=63.0
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCC---CCCCccchHHHHHhhhhhhcCCCcccccccccccccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG---NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~---~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~ 140 (862)
.|.|+|++||||||+|+.|++.+|+.++++|++++...-. .......+..+...+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------- 62 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGIGEEKDDEMEIDFDKLAYFIEEE------------------- 62 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcCCcccCChhhhcCHHHHHHHHHHh-------------------
Confidence 5899999999999999999999999999999986532110 001111222222221110
Q ss_pred ccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecc
Q 002962 141 GSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
.. ...+|++|.+.. + ...|++||++++.+....|...|.
T Consensus 63 ------~~-~~~vIidG~~~~---l-~~~~~vi~L~~~~~~~~~Rl~~R~ 101 (180)
T PRK03839 63 ------FK-EKNVVLDGHLSH---L-LPVDYVIVLRAHPKIIKERLKERG 101 (180)
T ss_pred ------cc-CCCEEEEecccc---c-cCCCEEEEEECCHHHHHHHHHHcC
Confidence 00 123678886432 1 236899999999999887776664
No 133
>cd07761 CYTH-like_CthTTM-like Clostridium thermocellum (Cth)TTM and similar proteins, a subgroup of the CYTH-like superfamily. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. Members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily have a unique active site located within an eight-stranded beta barrel.
Probab=98.45 E-value=2.6e-07 Score=90.94 Aligned_cols=80 Identities=11% Similarity=0.124 Sum_probs=68.0
Q ss_pred hhhhcccceeeeecceeEEEeeCceeeeccceeeccccceeeec---eeccchhccccEEEEEEeeceeeEee-CeeEEe
Q 002962 275 EEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---MTLGGLLDLGYSVVASYKRASTYVVY-GNLSVS 350 (862)
Q Consensus 275 ~~al~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v---~~~~~L~~LGy~~~~~~~K~R~~~~~-~~~~v~ 350 (862)
++++ |||..++++.|||||+. + +.|.|+|..| .+.++|. +.....++|.|..|.+ ++..++
T Consensus 32 ~~~v-----RvR~~~~~~~lT~K~~~----~---~~R~E~E~~I~~~~~~~ll~---~~~~~~I~K~R~~~~~~~~~~~~ 96 (146)
T cd07761 32 NPEV-----RIRSKGEKYILTVKSGG----G---LVREEIEIEIDKKEFEHLLE---KTEGNLIEKTRYLIPLEGGLLAE 96 (146)
T ss_pred CcEE-----EEEEECCEEEEEEEcCC----C---cceEEEEEeCCHHHHHHHHH---hCCCCeEEEEEEEEEeCCCcEEE
Confidence 4567 99999999999999874 5 6899999999 5555554 7778899999999999 999999
Q ss_pred eehhcccc---ceEEEEEcCCcc
Q 002962 351 FETIDTLD---ETFMVLRGTNRK 370 (862)
Q Consensus 351 lD~v~~lG---~~FvEiE~~~~~ 370 (862)
||.++|.+ . |+|||..+++
T Consensus 97 vD~~~g~~~gL~-~~EvE~~se~ 118 (146)
T cd07761 97 LDVFEGRLTGLV-YAEVEFPSEE 118 (146)
T ss_pred EEEEcCCCCCeE-EEEEEcCCch
Confidence 99999987 5 8999987543
No 134
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.43 E-value=2.3e-07 Score=95.14 Aligned_cols=161 Identities=9% Similarity=-0.003 Sum_probs=82.2
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchH--HHHHhhhhhhcCCCccccccccccc
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFD--ALVQNLQDLTEGKDTLIPMFDYQQK 137 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~--~l~~~L~~l~~~~~i~~p~~~~~~~ 137 (862)
.++++|.|+||||||||||++.|.+.+.-...+...--+.. ..+..+..|+. .-.++...+..+.-+.+-.|....+
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~-r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~Y 80 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP-RPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYY 80 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC-CCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeee
Confidence 35788999999999999999999875421111111111111 11111111111 1111222223343344333332222
Q ss_pred ccccc-ceeeccCceEEEEcccchhhHhhhhcc-c--eEEEEEec-eeeeeeeeeecccCCccchhhHHhhhhhhhhccc
Q 002962 138 NRIGS-KVIKGASSGVVIVDGTYALDARLRSLL-D--IRVAVVGG-VHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHI 212 (862)
Q Consensus 138 ~~~~~-~~~~~~~~~vVIvEG~~l~~~~l~~~~-D--~~I~Vda~-~~~~l~R~i~RD~~~~~~~e~~~~~~~p~~~k~I 212 (862)
..... .........++|++.-.-....+...+ + ..|||.+| .+....|...|+.......+.+++++.+..+.
T Consensus 81 Gt~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~~~-- 158 (186)
T PRK14737 81 GTPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIELDE-- 158 (186)
T ss_pred cCcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh--
Confidence 21111 011123456777774333333444333 3 57889885 45666666777654445566666666554443
Q ss_pred CCCcccceeecCCc
Q 002962 213 EPDLHHAQIRINNR 226 (862)
Q Consensus 213 ep~~~~ADiII~N~ 226 (862)
...||.||.|+
T Consensus 159 ---~~~~D~vI~N~ 169 (186)
T PRK14737 159 ---ANEFDYKIIND 169 (186)
T ss_pred ---hccCCEEEECc
Confidence 57899999998
No 135
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=98.41 E-value=3.3e-09 Score=115.74 Aligned_cols=172 Identities=14% Similarity=-0.000 Sum_probs=95.3
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeeccc--ccccCCCC-CCCccchHHHHHhhhhhhcCCCcccccccccccc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~~-~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~ 138 (862)
+.+|.|+||+|||||.||-.||+. +..|||+|.+ |++++-.. .|..-++....++|-++....+ .+.+.++....
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e-~~sv~~f~~~a 81 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIK-EYNLGIFYKEA 81 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCC-ceeHHHHHHHH
Confidence 348999999999999999999998 5699999995 99887554 3444444445555555444322 11111221111
Q ss_pred ccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhhHHhhhhhhhhcccCCCccc
Q 002962 139 RIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHH 218 (862)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~~~~p~~~k~Iep~~~~ 218 (862)
......+...+...|++.|..++-..+..-.+.. -+.+..++..+... ..... ....+++..+-+...
T Consensus 82 ~~~i~~i~~~gk~PilvGGTglYi~all~gl~~~----p~~~~~~r~~~~~~-~~~~g-------~~~l~~~L~~~DP~~ 149 (300)
T PRK14729 82 LKIIKELRQQKKIPIFVGGSAFYFKHLKYGLPST----PPVSSKIRIYVNNL-FTLKG-------KSYLLEELKRVDFIR 149 (300)
T ss_pred HHHHHHHHHCCCCEEEEeCchHHHHHHHcCCCCC----CCCCHHHHHHHHHH-HHhcC-------HHHHHHHHHhcCHHH
Confidence 1111112223445799999999876555322211 01111110011100 00000 011233333334456
Q ss_pred ceeecCCccchhhHhhhhhhccccC-CCCcccccccc
Q 002962 219 AQIRINNRFVSSFREAIYKLKCRSE-APGACSISAFQ 254 (862)
Q Consensus 219 ADiII~N~~~~~~~~~~y~lk~~~~-~l~g~~~~~~~ 254 (862)
|.-|-+|| .+..+++.+. ..+|.+.+.+.
T Consensus 150 A~~i~pnd-------~~Ri~RALEv~~~tG~~~s~~~ 179 (300)
T PRK14729 150 YESINKND-------IYRIKRSLEVYYQTGIPISQFL 179 (300)
T ss_pred HhhCCcCC-------HHHHHHHHHHHHHhCCChHhhh
Confidence 77777888 8888999888 66777666654
No 136
>PRK04182 cytidylate kinase; Provisional
Probab=98.41 E-value=2.6e-08 Score=100.53 Aligned_cols=112 Identities=28% Similarity=0.354 Sum_probs=66.8
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceeeecccccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~~~~r 598 (862)
+|+|+|++||||||+|+.|++.+|..++++|++++..... .+. +...+.+ . +. ..|.++......
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~-~g~------~~~~~~~----~--~~--~~~~~~~~~~~~ 66 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKE-RGM------SLEEFNK----Y--AE--EDPEIDKEIDRR 66 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHH-cCC------CHHHHHH----H--hh--cCchHHHHHHHH
Confidence 7999999999999999999999999999999887752211 111 0000000 0 00 011111111110
Q ss_pred cCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeecc
Q 002962 599 SGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD 650 (862)
Q Consensus 599 ~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd 650 (862)
. .........+|++|.+..+ .+.+..++.||+++|.+.++.|...|+
T Consensus 67 ~----~~~~~~~~~~Vi~g~~~~~-~~~~~~~~~V~l~a~~e~~~~Rl~~r~ 113 (180)
T PRK04182 67 Q----LEIAEKEDNVVLEGRLAGW-MAKDYADLKIWLKAPLEVRAERIAERE 113 (180)
T ss_pred H----HHHHhcCCCEEEEEeecce-EecCCCCEEEEEECCHHHHHHHHHhcc
Confidence 0 0111023456778877643 112337899999999999998887775
No 137
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=2.9e-09 Score=115.62 Aligned_cols=175 Identities=19% Similarity=0.143 Sum_probs=98.6
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEeeccc--ccccCCCC-CCCccchHHHHHhhhhhhcCCCccccccccccc
Q 002962 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~~-~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~ 137 (862)
.+.+|.|+||+|||||-+|-.||+.+|..|||+|.+ |++++-.. .|..-++....++|-+++.-.+ .+...++...
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e-~ysa~~f~~~ 80 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTE-SYSAAEFQRD 80 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccc-cccHHHHHHH
Confidence 467899999999999999999999999999999996 99887543 3433333333444444333222 2222222221
Q ss_pred cccccceeeccCceEEEEcccchhhHhhhh-ccceEEEEEeceeeeeeeeeecccCCccchhhHHhhhhhhhhcccCCCc
Q 002962 138 NRIGSKVIKGASSGVVIVDGTYALDARLRS-LLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDL 216 (862)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~-~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~~~~p~~~k~Iep~~ 216 (862)
.......+...+.-.++|.|.+++...+.. +.+.. +.+...++++ |........ ..++.....-+.
T Consensus 81 a~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~~~~p-----~~~~~~r~~~-~~~~~~~g~-------~~L~~~L~~~Dp 147 (308)
T COG0324 81 ALAAIDDILARGKLPILVGGTGLYLKALLEGLSLLP-----EADPEVRRRL-EAELAELGN-------DALHAELKKIDP 147 (308)
T ss_pred HHHHHHHHHhCCCCcEEEccHHHHHHHHHcCCCCCC-----CCCHHHHHHH-HHHHHhcCH-------HHHHHHHHhhCH
Confidence 111111222333457899999998755543 22221 1111122221 111111011 112222223344
Q ss_pred ccceeecCCccchhhHhhhhhhccccC-CCCccccccccCC
Q 002962 217 HHAQIRINNRFVSSFREAIYKLKCRSE-APGACSISAFQGN 256 (862)
Q Consensus 217 ~~ADiII~N~~~~~~~~~~y~lk~~~~-~l~g~~~~~~~~~ 256 (862)
..|.-|.+|| ++..+++++. .++|.+.+.+...
T Consensus 148 ~~a~~i~pnD-------~~Ri~RALEv~~~tGk~~s~~~~~ 181 (308)
T COG0324 148 EAAAKIHPND-------PQRIIRALEVYYLTGKPISELQKR 181 (308)
T ss_pred HHHHhcCCCc-------hhHHHHHHHHHHHHCCCHHHHhhc
Confidence 5666777888 8888888887 8888877666444
No 138
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.40 E-value=2e-07 Score=94.64 Aligned_cols=117 Identities=16% Similarity=0.086 Sum_probs=68.2
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccccccccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~~~ 143 (862)
+|.|.|++||||||+|+.|++.+|+.+|+++++.+.....+.+ .. ..+.+.+ ..|..+.-............
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~--~~-~~~~~~~---~~g~~~~~~~~~~ll~~~~~-- 72 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSE--NG-ELIESMI---KNGKIVPSEVTVKLLKNAIQ-- 72 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCCh--HH-HHHHHHH---HCCCcCCHHHHHHHHHHHHh--
Confidence 4889999999999999999999999999998875532221111 00 0111111 12221111011111111110
Q ss_pred eeeccCceEEEEcccchhh---Hh---hh---hccceEEEEEeceeeeeeeeeeccc
Q 002962 144 VIKGASSGVVIVDGTYALD---AR---LR---SLLDIRVAVVGGVHFSLISKVQYDI 191 (862)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~---~~---l~---~~~D~~I~Vda~~~~~l~R~i~RD~ 191 (862)
... ..-+|+||..--. .. +. ...|.+||+++|.+..++|...|..
T Consensus 73 --~~~-~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~ 126 (183)
T TIGR01359 73 --ADG-SKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQ 126 (183)
T ss_pred --ccC-CCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence 011 3468999974321 11 11 2468999999999999999888864
No 139
>PRK06762 hypothetical protein; Provisional
Probab=98.39 E-value=1.6e-07 Score=93.99 Aligned_cols=106 Identities=22% Similarity=0.260 Sum_probs=68.4
Q ss_pred cEEEeecCCCCCCcchhHhhhccce--eeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceeeecc
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIV--GCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE 594 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l--~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~ 594 (862)
|.+|+|+|++||||||+|+.|++.+ ++.+++.|.+.... ...++.++....+++.+....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l---~~~~~~~~~~~~~~~~~~~~~--------------- 63 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM---LRVKDGPGNLSIDLIEQLVRY--------------- 63 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh---ccccCCCCCcCHHHHHHHHHH---------------
Confidence 6789999999999999999999988 57778888876431 011223333333322221111
Q ss_pred cccccCceeeeecccceeEEEcceeccc------Hhhhhccc---eeeeeecccchheeheeeccc
Q 002962 595 TGARSGFKELEVSEDCGVIIFEGVYALH------PEIRKSLD---LWIAVVGGVHSHLISRVQRDK 651 (862)
Q Consensus 595 ~~~r~~~~~~~~~~~~~vVIvEG~~~~~------~~l~~~~D---~~I~v~~~~d~rl~Rri~Rd~ 651 (862)
.......+|+||.+.-. ..+....+ ..||+++|.++++.|...|..
T Consensus 64 -----------~~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~ 118 (166)
T PRK06762 64 -----------GLGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK 118 (166)
T ss_pred -----------HHhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc
Confidence 01124678888886421 22333333 788999999999999888863
No 140
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.38 E-value=8.7e-08 Score=94.22 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=33.4
Q ss_pred EeecCCCCCCcchHHHHhhhceeeEEEeecccccccC
Q 002962 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD 101 (862)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~ 101 (862)
|.|+|++||||||+|+.|++.+|+..++.|.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~ 38 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRA 38 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHc
Confidence 7899999999999999999999999999999865443
No 141
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.36 E-value=4e-07 Score=92.13 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=33.2
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeeccccc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (862)
+..|.|.|++||||||+++.|++.+|..++++|....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~ 40 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIE 40 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHH
Confidence 3469999999999999999999999999999998643
No 142
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=98.35 E-value=1.9e-07 Score=93.01 Aligned_cols=168 Identities=19% Similarity=0.324 Sum_probs=120.9
Q ss_pred cEEEeecCCCCCCcchhHhhhcccee-----eeEEeeccccccc--c-----------cccCccCCCcccchhhhcccch
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSE--Q-----------VKDFKYDDFSSLDLSLLSKNIS 578 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy~~~--~-----------~~~~n~~~p~t~D~~lL~~~L~ 578 (862)
-.||+|+|.||+|-||.+..+.+.++ +..+.-|.|++-. + -..+.+-.|++-|+..|.+.+.
T Consensus 5 hPiIavTGSSGAGTTTts~aFrKiF~~~~I~aa~iEGDsFHR~tRpeMd~~Irkar~~GrhisyFgpeANdf~~LE~~f~ 84 (289)
T COG3954 5 HPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTFI 84 (289)
T ss_pred CceEEEecCCCCCcccHHHHHHHHHHhcCccHhhhccccccccCchhHHHHHHHHHHcCCcceecCccccchHHHHHHHH
Confidence 34899999999999999998887664 5678899997641 1 1123455789999999999887
Q ss_pred hhcCCccccc----------eeeecccccccCceeeeecccceeEEEcceeccc----Hhhhhccceeeeeecccchhee
Q 002962 579 DIRNGRRTKV----------PIFDLETGARSGFKELEVSEDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHLI 644 (862)
Q Consensus 579 ~L~~g~~v~~----------P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~----~~l~~~~D~~I~v~~~~d~rl~ 644 (862)
..-+...-.. -.|+...|.-.+|... .++.|++..||.+.+- -.+.+.+|+.|-+..-....+.
T Consensus 85 eYg~~G~Gr~R~YlHt~dEAvp~nq~PGTFTpW~~l--pe~sDvLFYEGLHGgvVt~~~nvAqHvDlliGvVPivNLEWI 162 (289)
T COG3954 85 EYGQSGKGRSRKYLHTYDEAVPWNQVPGTFTPWQPL--PEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLEWI 162 (289)
T ss_pred HhcccCCcchhhhhhchhhcCccCCCCCCCCCcccC--CCccceeeeeccccceecCcccHhhhhceeeeeeeEeeHHHH
Confidence 6543221111 2233333444444332 4568999999999874 3578899999988887888888
Q ss_pred heeecccccccccccc-cceehhhhhhhhhccccccccccccc
Q 002962 645 SRVQRDKSRMGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKI 686 (862)
Q Consensus 645 Rri~Rd~~~rg~~~~~-~~~~~~v~p~~~~~I~p~~~~ADivI 686 (862)
.++.||..+||++.+. .+-.-...+.|..||-|+-.+.|+-+
T Consensus 163 QK~~RDt~~RGhSrEAVmDsivRsMdDYinyItPQFSrThINF 205 (289)
T COG3954 163 QKLIRDTSERGHSREAVMDSVVRSMDDYINYITPQFSRTHINF 205 (289)
T ss_pred HHHHhcccccCccHHHHHHHHHHhhhhHHhhcCccccccccce
Confidence 8999999999998774 22233456789999999887777654
No 143
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.33 E-value=6.7e-07 Score=76.50 Aligned_cols=56 Identities=36% Similarity=0.631 Sum_probs=46.5
Q ss_pred EEeecCCCCCCcchHHHHhhhce---eeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCcccccccccccccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L---g~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~ 140 (862)
+|+|+|++||||||+++.|++.| ++.+++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~----------------------------------------------- 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE----------------------------------------------- 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE-----------------------------------------------
Confidence 48999999999999999999874 2333322
Q ss_pred ccceeeccCceEEEEcccchhhH----hhhhccceEEEEEe
Q 002962 141 GSKVIKGASSGVVIVDGTYALDA----RLRSLLDIRVAVVG 177 (862)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l~~~----~l~~~~D~~I~Vda 177 (862)
++|+||.+.+.. .+.+.+|+.||+++
T Consensus 34 -----------~~I~eg~~~~~~~~~~~~~~~~d~~Iyld~ 63 (69)
T cd02019 34 -----------IVILEGLYASYKSRDARIRDLADLKIYLDA 63 (69)
T ss_pred -----------EEEecchhhhhhhHHhhccccccEEEEEEe
Confidence 799999999885 57789999999998
No 144
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.32 E-value=5.8e-09 Score=114.62 Aligned_cols=43 Identities=37% Similarity=0.475 Sum_probs=38.2
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEeecc--cccccCCC
Q 002962 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN--YRVGVDEG 103 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~--~~~~~~~~ 103 (862)
.+.+|+|+||+||||||+|..|++.+++.+|++|. +|+++.-.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~ 47 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIG 47 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeeccccc
Confidence 34689999999999999999999999999999999 58876643
No 145
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.31 E-value=1.5e-07 Score=91.24 Aligned_cols=109 Identities=24% Similarity=0.231 Sum_probs=65.5
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHH----hhhhhhcCCCccccccccccccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQ----NLQDLTEGKDTLIPMFDYQQKNR 139 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~----~L~~l~~~~~i~~p~~~~~~~~~ 139 (862)
+|.++|++||||||+|+.|++.+++.+|+.|.++..+...+.+...+.....+ .+......
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 65 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRK--------------- 65 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHH---------------
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHH---------------
Confidence 58899999999999999999999999999999977655433322211111111 11111000
Q ss_pred cccceeeccCceEEEEcccchhhH---hhhhc------cceEEEEEeceeeeeeeeeecccCC
Q 002962 140 IGSKVIKGASSGVVIVDGTYALDA---RLRSL------LDIRVAVVGGVHFSLISKVQYDIGD 193 (862)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l~~~---~l~~~------~D~~I~Vda~~~~~l~R~i~RD~~~ 193 (862)
. .....-+|++..+.... .+.+. --..|+++++.++..+|...|....
T Consensus 66 ----~--l~~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~ 122 (143)
T PF13671_consen 66 ----A--LRNGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREG 122 (143)
T ss_dssp ----H--HHTT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCC
T ss_pred ----H--HHcCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCcc
Confidence 0 01112356676655442 22222 2266899999999888888877544
No 146
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.29 E-value=4.9e-07 Score=91.95 Aligned_cols=118 Identities=17% Similarity=0.131 Sum_probs=69.2
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccc---ccccccc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPM---FDYQQKN 138 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~---~~~~~~~ 138 (862)
..+|+|.|++||||||+|+.|++.+|...++++++.+.......+ ....+...+. .+. ..|. +.. ...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~---~~~--~~~~~~~~~~-l~~ 73 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSE---RGKQLQAIME---SGD--LVPLDTVLDL-LKD 73 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCH---HHHHHHHHHH---CCC--CCCHHHHHHH-HHH
Confidence 358999999999999999999999999999999875532111111 0011111111 111 1111 010 001
Q ss_pred ccccceeeccCceEEEEcccchhh---Hhh---hhccceEEEEEeceeeeeeeeeeccc
Q 002962 139 RIGSKVIKGASSGVVIVDGTYALD---ARL---RSLLDIRVAVVGGVHFSLISKVQYDI 191 (862)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~---~~l---~~~~D~~I~Vda~~~~~l~R~i~RD~ 191 (862)
.... .......+|+||..-.. ..+ ....|++||++++.+...+|...|..
T Consensus 74 ~~~~---~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 129 (188)
T TIGR01360 74 AMVA---ALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAE 129 (188)
T ss_pred HHHc---ccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccc
Confidence 0100 11234568889964221 111 13478999999999998888887764
No 147
>PRK04040 adenylate kinase; Provisional
Probab=98.27 E-value=2.6e-07 Score=94.86 Aligned_cols=37 Identities=19% Similarity=0.358 Sum_probs=34.2
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce--eeEEEeeccccc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVI--GCTLISMENYRV 98 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L--g~~vI~~D~~~~ 98 (862)
|.+|+|+|++||||||+++.|++.+ +..+++.++++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~ 40 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVML 40 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHH
Confidence 5789999999999999999999999 899999999865
No 148
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.27 E-value=6.4e-08 Score=102.21 Aligned_cols=38 Identities=26% Similarity=0.632 Sum_probs=36.2
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
+.+|+|+|++||||||+|+.|++.+|..+++.|++|+.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 57899999999999999999999999999999999986
No 149
>PRK14527 adenylate kinase; Provisional
Probab=98.26 E-value=4.9e-07 Score=92.90 Aligned_cols=138 Identities=17% Similarity=0.083 Sum_probs=76.8
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhh-hcCCCccccccccccccc
Q 002962 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKNR 139 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l-~~~~~i~~p~~~~~~~~~ 139 (862)
.+.+|.|.|++||||||+|+.|++.+|+..+++|++.+.....+.+ +...+..+ ..+..+............
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~-------~~~~~~~~~~~g~~~p~~~~~~l~~~~ 77 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTE-------LGQRAKPIMEAGDLVPDELILALIRDE 77 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcH-------HHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 4578999999999999999999999999999999986543222111 11111111 112111100011111111
Q ss_pred cccceeeccCceEEEEcccchhh---Hhhh-------hccceEEEEEeceeeeeeeeeecccCC-c-cchhhHHhhhhhh
Q 002962 140 IGSKVIKGASSGVVIVDGTYALD---ARLR-------SLLDIRVAVVGGVHFSLISKVQYDIGD-S-CSLDSLIDSIFPL 207 (862)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l~~---~~l~-------~~~D~~I~Vda~~~~~l~R~i~RD~~~-~-~~~e~~~~~~~p~ 207 (862)
.. . ....-+|+||..--. ..+. ..++.+++++++.+.++.|...|.... + .+-++.+.+.+..
T Consensus 78 l~----~-~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~ 152 (191)
T PRK14527 78 LA----G-MEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQV 152 (191)
T ss_pred Hh----c-CCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHH
Confidence 10 0 111248999864321 1111 236788999999999999998885332 2 2223444444444
Q ss_pred hhc
Q 002962 208 FRK 210 (862)
Q Consensus 208 ~~k 210 (862)
|.+
T Consensus 153 y~~ 155 (191)
T PRK14527 153 YRE 155 (191)
T ss_pred HHH
Confidence 444
No 150
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.25 E-value=9.9e-08 Score=100.15 Aligned_cols=130 Identities=19% Similarity=0.243 Sum_probs=74.2
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeeccccccccc--ccCccCCCcc---------cchh-----------hhc
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV--KDFKYDDFSS---------LDLS-----------LLS 574 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~--~~~n~~~p~t---------~D~~-----------lL~ 574 (862)
+.+|+|+||+||||||+++.|++.++..+++.+++|+.... ...+.+.++. +.+. +-.
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVFLNG 81 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEEEcC
Confidence 46899999999999999999999999999999999875210 0001111000 0000 000
Q ss_pred ccchhhcCC--------ccccceeeecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheehe
Q 002962 575 KNISDIRNG--------RRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISR 646 (862)
Q Consensus 575 ~~L~~L~~g--------~~v~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rr 646 (862)
+.+...... ....+|.+......+. ......+-+|+||.+.++.-+ +..|++||++++.+.|..||
T Consensus 82 ~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~q-----r~~a~~~~~Vi~Gr~~~~~v~-~~a~~~ifl~a~~~~Ra~Rr 155 (217)
T TIGR00017 82 EDVSEAIRTQEVANAASKVAVFPKVREALLKRQ-----QALAKNDGIIADGRDIGTVVF-PNAEVKIFLDASVEERAKRR 155 (217)
T ss_pred cchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHH-----HHHhhcCCEEEEEcCcceEEe-CCCCEEEEEECCHHHHHHHH
Confidence 011100000 0111222222211111 001122358999998765422 33789999999999999999
Q ss_pred eecccc
Q 002962 647 VQRDKS 652 (862)
Q Consensus 647 i~Rd~~ 652 (862)
..|...
T Consensus 156 ~~~~~~ 161 (217)
T TIGR00017 156 YKQLQI 161 (217)
T ss_pred HHHHhc
Confidence 887643
No 151
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.24 E-value=6e-07 Score=89.10 Aligned_cols=98 Identities=23% Similarity=0.296 Sum_probs=73.0
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeecccccc------cCCCCCCCccchHHHHHhhhhhhcCCCcccccccccc
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG------VDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~------~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~ 136 (862)
+.|+|||.+|+||||+|+.|+ .+|..++++-+|.+. .++....-..|.+.++..+..+..
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~~------------- 66 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYTEYDELRKSVIVDVDKLRKRLEELLR------------- 66 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCeeccCCccceEEeeHHHHHHHHHHHhc-------------
Confidence 369999999999999999999 799999999998542 223223345677777777665321
Q ss_pred ccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecc
Q 002962 137 KNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 137 ~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
..-.|+|+.+. ++.+.+|++|.+.++++.-..|...|-
T Consensus 67 -------------~~~~Ivd~H~~---hl~~~~dlVvVLR~~p~~L~~RLk~RG 104 (180)
T COG1936 67 -------------EGSGIVDSHLS---HLLPDCDLVVVLRADPEVLYERLKGRG 104 (180)
T ss_pred -------------cCCeEeechhh---hcCCCCCEEEEEcCCHHHHHHHHHHcC
Confidence 12367787765 555689999999999998777776665
No 152
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.24 E-value=6.4e-07 Score=89.64 Aligned_cols=134 Identities=21% Similarity=0.219 Sum_probs=80.6
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccch---HHHH----HhhhhhhcCCCccccccccc
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDF---DALV----QNLQDLTEGKDTLIPMFDYQ 135 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~---~~l~----~~L~~l~~~~~i~~p~~~~~ 135 (862)
.-|.+.|++||||||+++.||+.||...+|+|..........-++.|+. +.++ +.|.++..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~------------ 70 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLE------------ 70 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhh------------
Confidence 3488999999999999999999999999999998553333322222211 1111 11222111
Q ss_pred cccccccceeeccCceEEEEcccchhh-Hhhhhcc---ceEEEEEeceeeeeeeeeecccCCc----c----chhhHHhh
Q 002962 136 QKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLL---DIRVAVVGGVHFSLISKVQYDIGDS----C----SLDSLIDS 203 (862)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~---D~~I~Vda~~~~~l~R~i~RD~~~~----~----~~e~~~~~ 203 (862)
.+ +.||.-|-.++. +..+.++ -.+||++++.+...+|.- +|.... . ..+++++.
T Consensus 71 ------------~~-~~ViaTGGG~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~-~~~~RPll~~~~~~~~l~~L~~~ 136 (172)
T COG0703 71 ------------ED-NAVIATGGGAVLSEENRNLLKKRGIVVYLDAPFETLYERLQ-RDRKRPLLQTEDPREELEELLEE 136 (172)
T ss_pred ------------cC-CeEEECCCccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhc-cccCCCcccCCChHHHHHHHHHH
Confidence 11 234444433333 3333332 288999999998766654 332111 1 24456666
Q ss_pred hhhhhhcccCCCcccceeecCCccch
Q 002962 204 IFPLFRKHIEPDLHHAQIRINNRFVS 229 (862)
Q Consensus 204 ~~p~~~k~Iep~~~~ADiII~N~~~~ 229 (862)
..|.|++ .||++++.+..+
T Consensus 137 R~~~Y~e-------~a~~~~~~~~~~ 155 (172)
T COG0703 137 RQPLYRE-------VADFIIDTDDRS 155 (172)
T ss_pred HHHHHHH-------hCcEEecCCCCc
Confidence 7788877 599999887544
No 153
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.24 E-value=4.4e-07 Score=92.82 Aligned_cols=117 Identities=20% Similarity=0.081 Sum_probs=67.7
Q ss_pred EeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccccccccce
Q 002962 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKV 144 (862)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~~~~ 144 (862)
|.|.|++||||||+|+.|++.+|+.++++|++.+.......+ ....+...+. .+..+.-.............
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~---~~~~~~~~~~---~g~~~~~~~~~~l~~~~l~~-- 73 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTE---LGKKAKEYID---SGKLVPDEIVIKLLKERLKK-- 73 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCCh---HHHHHHHHHH---cCCccCHHHHHHHHHHHHhc--
Confidence 789999999999999999999999999999986643222111 0111111111 12111100111111111100
Q ss_pred eeccCceEEEEcccchhh------Hhhhh---ccceEEEEEeceeeeeeeeeeccc
Q 002962 145 IKGASSGVVIVDGTYALD------ARLRS---LLDIRVAVVGGVHFSLISKVQYDI 191 (862)
Q Consensus 145 ~~~~~~~vVIvEG~~l~~------~~l~~---~~D~~I~Vda~~~~~l~R~i~RD~ 191 (862)
.....-+|++|.-.-. ..... ..|++|+++++.+..++|...|..
T Consensus 74 --~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~ 127 (194)
T cd01428 74 --PDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRI 127 (194)
T ss_pred --ccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence 0023357888853311 11222 578999999999999999888864
No 154
>PRK13946 shikimate kinase; Provisional
Probab=98.24 E-value=4.7e-07 Score=92.58 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=33.7
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeeccccc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (862)
+..|+++|++||||||+++.|++.||+.++++|....
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~ 46 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIE 46 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHH
Confidence 4579999999999999999999999999999998644
No 155
>PRK14528 adenylate kinase; Provisional
Probab=98.24 E-value=3.5e-07 Score=93.76 Aligned_cols=137 Identities=15% Similarity=0.076 Sum_probs=76.4
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhh-hhcCCCccccccccccccccc
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRIG 141 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~-l~~~~~i~~p~~~~~~~~~~~ 141 (862)
..|.|.|++||||||+|+.|++.+|+.++++|++.+.....+.+ +...+.. +..|.-+.-.........+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~-------~g~~~~~~~~~g~lvp~~~~~~~~~~~l~ 74 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTA-------MGIEAKRYMDAGDLVPDSVVIGIIKDRIR 74 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCH-------HHHHHHHHHhCCCccCHHHHHHHHHHHHh
Confidence 45899999999999999999999999999999986643222211 1111111 111221111111111111111
Q ss_pred cceeeccCceEEEEcccchhh-------Hhh---hhccceEEEEEeceeeeeeeeeecccCCc--cchhhHHhhhhhhhh
Q 002962 142 SKVIKGASSGVVIVDGTYALD-------ARL---RSLLDIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLIDSIFPLFR 209 (862)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~l~~-------~~l---~~~~D~~I~Vda~~~~~l~R~i~RD~~~~--~~~e~~~~~~~p~~~ 209 (862)
. .....-+|+||.---. ..+ ....|.+|+++++.+..+.|...|..... .+-++.+.+.+..|.
T Consensus 75 ~----~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~ 150 (186)
T PRK14528 75 E----ADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYN 150 (186)
T ss_pred C----cCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHH
Confidence 1 1112358899963211 111 13479999999999999999888753322 223334444444444
Q ss_pred c
Q 002962 210 K 210 (862)
Q Consensus 210 k 210 (862)
.
T Consensus 151 ~ 151 (186)
T PRK14528 151 K 151 (186)
T ss_pred H
Confidence 4
No 156
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.23 E-value=6.3e-07 Score=91.74 Aligned_cols=121 Identities=17% Similarity=0.099 Sum_probs=63.6
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCC--ccchHHHHHhhhhhhcCCCcccc-ccc---ccc
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLD--SIDFDALVQNLQDLTEGKDTLIP-MFD---YQQ 136 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~--s~d~~~l~~~L~~l~~~~~i~~p-~~~---~~~ 136 (862)
.+|+|.||+|||||||++.|+..++..++..|............+ .+..+...+.+ ..+ ..... .++ ..+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~g~~yg~ 78 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRA---GQN-LFALSWHANGLYYGV 78 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHH---HCC-chhhHHHHhCCccCC
Confidence 368999999999999999999987777766666533221111111 11111111111 111 10000 000 011
Q ss_pred ccccccceeeccCceEEEEcccchhhHhhhhcc---ceEEEEEeceeeeeeeeeecc
Q 002962 137 KNRIGSKVIKGASSGVVIVDGTYALDARLRSLL---DIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 137 ~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~---D~~I~Vda~~~~~l~R~i~RD 190 (862)
...+.. . ......||+.|.......+...+ -.+|||+++.+...+|...|+
T Consensus 79 ~~~~~~-~--l~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~ 132 (186)
T PRK10078 79 GIEIDL-W--LHAGFDVLVNGSRAHLPQARARYQSALLPVCLQVSPEILRQRLENRG 132 (186)
T ss_pred cHHHHH-H--HhCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhC
Confidence 111111 1 11233466788765544343332 357899999999888887775
No 157
>PRK04040 adenylate kinase; Provisional
Probab=98.22 E-value=2.1e-07 Score=95.60 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=35.0
Q ss_pred cEEEeecCCCCCCcchhHhhhccce--eeeEEeecccccc
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIV--GCEVVSLESYFKS 554 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l--~~~vislDdfy~~ 554 (862)
|.+|+|+|++||||||+++.|++.+ +..+++.++++..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~ 41 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLE 41 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHH
Confidence 6789999999999999999999999 7889999999865
No 158
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.22 E-value=1.9e-07 Score=95.85 Aligned_cols=133 Identities=20% Similarity=0.288 Sum_probs=76.3
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeeccccccccc----ccCccCCC-------cccchhhhcccchhhcCCcc
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV----KDFKYDDF-------SSLDLSLLSKNISDIRNGRR 585 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~----~~~n~~~p-------~t~D~~lL~~~L~~L~~g~~ 585 (862)
.++|+|.||+||||||+|+.|+..||..+++.--+|+.-.. ...++++. ..+++..... ..-+.+|+.
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~-~~v~l~ged 82 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVND-DRVFLNGED 82 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceeccc-ceEEECCch
Confidence 38999999999999999999999999999999999987221 11222221 1122222211 111122222
Q ss_pred ccceeeeccccccc------C-----c-eee-eecccceeEEEcceecccHhhhhccceeeeeecccchheeheeeccc
Q 002962 586 TKVPIFDLETGARS------G-----F-KEL-EVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDK 651 (862)
Q Consensus 586 v~~P~yd~~~~~r~------~-----~-~~~-~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (862)
+.-..=....+... + - ... ......+-+|+||-=++. .+.+..+++||+++++++|-+||.....
T Consensus 83 vs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGT-vV~PdA~lKiFLtAS~e~RA~RR~~q~~ 160 (222)
T COG0283 83 VSEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGT-VVFPDAELKIFLTASPEERAERRYKQLQ 160 (222)
T ss_pred hhhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcc-eECCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 21111011111000 0 0 000 001112458899988765 2345568999999999999999877543
No 159
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.22 E-value=1e-06 Score=86.52 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=33.2
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (862)
+|.|+|++||||||+|+.|++.+++.+++.|.++..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~ 36 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPP 36 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccH
Confidence 478999999999999999999999999999998763
No 160
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.22 E-value=1.1e-06 Score=97.18 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=35.3
Q ss_pred cCCeEEEeecCCCCCCcchHHHHhhhceeeEEEeeccccc
Q 002962 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (862)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (862)
..+...|+|+|++||||||+++.|++.+|+.++++|....
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~ 169 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIE 169 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHH
Confidence 3455689999999999999999999999999999998644
No 161
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.22 E-value=3.3e-07 Score=92.15 Aligned_cols=36 Identities=22% Similarity=0.445 Sum_probs=32.8
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (862)
.|.|+|++||||||+|+.|++.+|+++++.|.+...
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~ 39 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQS 39 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHH
Confidence 488899999999999999999999999999998553
No 162
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.21 E-value=1.2e-06 Score=74.94 Aligned_cols=26 Identities=38% Similarity=0.542 Sum_probs=23.2
Q ss_pred eEEEcceecccH----hhhhccceeeeeec
Q 002962 612 VIIFEGVYALHP----EIRKSLDLWIAVVG 637 (862)
Q Consensus 612 vVIvEG~~~~~~----~l~~~~D~~I~v~~ 637 (862)
++|+||.+.... .+.+..|+.||+++
T Consensus 34 ~~I~eg~~~~~~~~~~~~~~~~d~~Iyld~ 63 (69)
T cd02019 34 IVILEGLYASYKSRDARIRDLADLKIYLDA 63 (69)
T ss_pred EEEecchhhhhhhHHhhccccccEEEEEEe
Confidence 999999999874 57889999999987
No 163
>PRK13947 shikimate kinase; Provisional
Probab=98.19 E-value=1.1e-06 Score=88.13 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=33.8
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeeccccccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV 100 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~ 100 (862)
-|.|+|++||||||+|+.||+.||+.+++.|.+....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~ 39 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKM 39 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhh
Confidence 4899999999999999999999999999999975543
No 164
>PRK14530 adenylate kinase; Provisional
Probab=98.18 E-value=1.3e-06 Score=91.51 Aligned_cols=117 Identities=13% Similarity=0.086 Sum_probs=66.2
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCcc-chHHHHHhhhhhhcCCCcccccccccccccccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSI-DFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS 142 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~-d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~~ 142 (862)
.|+|.|++||||||+|+.|++.+|+..|++|++.+.....+..+.. ........ +..|..+.-...........
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~---~~~g~~~~d~~~~~~l~~~l-- 79 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEY---MDAGELVPDAVVNEIVEEAL-- 79 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHHHHHH---HHcCCCCCHHHHHHHHHHHH--
Confidence 5899999999999999999999999999999986643211100000 00111111 11221111000000000000
Q ss_pred ceeeccCceEEEEcccchhh---Hhhh--hccceEEEEEeceeeeeeeeeecc
Q 002962 143 KVIKGASSGVVIVDGTYALD---ARLR--SLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l~~---~~l~--~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
....-+|++|...-. ..+. ...|++||++++.+..+.|...|.
T Consensus 80 -----~~~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~ 127 (215)
T PRK14530 80 -----SDADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRR 127 (215)
T ss_pred -----hcCCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCC
Confidence 112347889853322 1221 237999999999999888877664
No 165
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=98.17 E-value=1.8e-08 Score=109.45 Aligned_cols=171 Identities=17% Similarity=0.110 Sum_probs=88.7
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecc--cccccCCCCC-CCccchHHHHHhhhhhhcCCCcccccccccccccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMEN--YRVGVDEGND-LDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~--~~~~~~~~~~-~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~ 140 (862)
+|+|+||+|||||++|..|++.++..+|++|+ +|+++.-... |..-+.+...++|-+.....+ .+.+-++......
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~-~~~v~~f~~~a~~ 79 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSE-SYSAADFQTLALN 79 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhh-eEcHHHHHHHHHH
Confidence 48999999999999999999999999999999 5887765432 332222233333333222211 1111111111110
Q ss_pred ccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhhHHhhhhhhhhcccCCCcccce
Q 002962 141 GSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQ 220 (862)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~~~~p~~~k~Iep~~~~AD 220 (862)
...........+|++.|..++-..+..-.... .+.+..++..+.+. ...... ...+++..+-+...|.
T Consensus 80 ~i~~~~~~g~~pi~vGGTg~Yi~all~g~~~~----p~~~~~~r~~l~~~-~~~~g~-------~~l~~~L~~~DP~~a~ 147 (287)
T TIGR00174 80 AIADITARGKIPLLVGGTGLYLKALLEGLSPT----PSADKLIREQLEIL-AEEQGW-------DFLYNELKKVDPVAAA 147 (287)
T ss_pred HHHHHHhCCCCEEEEcCcHHHHHHHHcCCCCC----CCCCHHHHHHHHHH-HHHcCH-------HHHHHHHHhcCHHHHH
Confidence 01111223345789999999876554322111 01111111111110 000011 1122222233345677
Q ss_pred eecCCccchhhHhhhhhhccccC-CCCcccccccc
Q 002962 221 IRINNRFVSSFREAIYKLKCRSE-APGACSISAFQ 254 (862)
Q Consensus 221 iII~N~~~~~~~~~~y~lk~~~~-~l~g~~~~~~~ 254 (862)
-|-.|| .+..+++.+. ..+|.+.+.+.
T Consensus 148 ~i~~nd-------~~Ri~RALEi~~~tG~~~s~~~ 175 (287)
T TIGR00174 148 KIHPND-------TRRVQRALEVFYATGKPPSELF 175 (287)
T ss_pred hcCCcc-------HHHHHHHHHHHHHHCCChHHHh
Confidence 777888 7888888887 55777666553
No 166
>PRK03839 putative kinase; Provisional
Probab=98.16 E-value=8.5e-07 Score=90.08 Aligned_cols=99 Identities=22% Similarity=0.307 Sum_probs=62.3
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceeeecccccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~~~~r 598 (862)
.|.|.|++||||||+++.|++.++..++++|+++....... .++..+...+..+...+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~------------------- 61 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGIGE-EKDDEMEIDFDKLAYFIEE------------------- 61 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcCCcc-cCChhhhcCHHHHHHHHHH-------------------
Confidence 47889999999999999999999999999999986432111 1111111112222211111
Q ss_pred cCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeec
Q 002962 599 SGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQR 649 (862)
Q Consensus 599 ~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~R 649 (862)
. .. ...+|++|.+... ...|..||++++.+....|...|
T Consensus 62 ----~---~~-~~~vIidG~~~~l----~~~~~vi~L~~~~~~~~~Rl~~R 100 (180)
T PRK03839 62 ----E---FK-EKNVVLDGHLSHL----LPVDYVIVLRAHPKIIKERLKER 100 (180)
T ss_pred ----h---cc-CCCEEEEeccccc----cCCCEEEEEECCHHHHHHHHHHc
Confidence 0 01 1236778865322 13688999999999987776555
No 167
>PRK13948 shikimate kinase; Provisional
Probab=98.16 E-value=1.6e-06 Score=88.63 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=35.9
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeeccccccc
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV 100 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~ 100 (862)
+.+..|.++|.+||||||+++.|++.+|..++|+|.+....
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~ 48 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERV 48 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHH
Confidence 34567999999999999999999999999999999875543
No 168
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.13 E-value=5e-07 Score=111.14 Aligned_cols=86 Identities=7% Similarity=-0.041 Sum_probs=55.6
Q ss_pred EEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecccCCccchhhHHh----hhhhhhhcccCCCcccceeecCCcc
Q 002962 152 VVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID----SIFPLFRKHIEPDLHHAQIRINNRF 227 (862)
Q Consensus 152 vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~----~~~p~~~k~Iep~~~~ADiII~N~~ 227 (862)
-+|+||--+. ..+.+.+|++||++|+++.|.+||..-... ..+.+++.+ +-.....+-+.|-+...|.|+..+.
T Consensus 191 ~~V~eGRDig-TvVfPdA~~KifL~As~e~RA~RR~~e~~~-~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iDts 268 (863)
T PRK12269 191 RVVCEGRDLT-TVVFVDADLKCYLDASIEARVARRWAQGTS-RLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDTS 268 (863)
T ss_pred CEEEECCCCc-cEECCCCCEEEEEECCHHHHHHHHHHhhhc-cCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEECC
Confidence 4899998775 355678899999999999999998654332 233333333 3334444556777777786665554
Q ss_pred chhhHhhhhhhc
Q 002962 228 VSSFREAIYKLK 239 (862)
Q Consensus 228 ~~~~~~~~y~lk 239 (862)
..++++-+=.+.
T Consensus 269 ~l~ieevv~~i~ 280 (863)
T PRK12269 269 CLTIEEVCERIA 280 (863)
T ss_pred CCCHHHHHHHHH
Confidence 555555444433
No 169
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.12 E-value=7.7e-07 Score=89.12 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=34.6
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeeccccc
Q 002962 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~ 553 (862)
.+..|.|+|++||||||+|+.|++.+|..+++.|++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~ 40 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIE 40 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHH
Confidence 46689999999999999999999999999999998865
No 170
>PRK08356 hypothetical protein; Provisional
Probab=98.11 E-value=9.1e-07 Score=91.26 Aligned_cols=38 Identities=29% Similarity=0.324 Sum_probs=33.0
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
+..+|+|+||+||||||+|+.|++ +|..++|+.+.++.
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~~~ 41 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPLID 41 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcccc
Confidence 346799999999999999999975 79889999987764
No 171
>PRK14531 adenylate kinase; Provisional
Probab=98.11 E-value=2.1e-06 Score=87.74 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=66.5
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhh-hcCCCccccccccccccccc
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKNRIG 141 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l-~~~~~i~~p~~~~~~~~~~~ 141 (862)
..|.|.|++||||||+|+.|++.+|+..|+++++.+.-...+.+ +.+.+... ..|..+.-............
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~-------~~~~~~~~~~~G~~v~d~l~~~~~~~~l~ 75 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSA-------LGQEAEAVMNRGELVSDALVLAIVESQLK 75 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCH-------HHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999999999999998876532211111 11111111 12221110000000000000
Q ss_pred cceeeccCceEEEEcccchhhH---hhh-------hccceEEEEEeceeeeeeeeeecc
Q 002962 142 SKVIKGASSGVVIVDGTYALDA---RLR-------SLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~l~~~---~l~-------~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
. ....-+|+||...-.. .+. ..+|.+|++++|+++...|...|.
T Consensus 76 ~-----~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~ 129 (183)
T PRK14531 76 A-----LNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG 129 (183)
T ss_pred h-----ccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC
Confidence 0 0122367798865321 111 235889999999999888887774
No 172
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.10 E-value=1.5e-07 Score=89.13 Aligned_cols=109 Identities=21% Similarity=0.294 Sum_probs=58.3
Q ss_pred EeecCCCCCCcchHHHHhhhceeeEEEee---cccccccC---CCCCCCccchHHHHHhhhhhhcCCCcccccccccccc
Q 002962 65 VGIGGPSGSGKTSLAEKLASVIGCTLISM---ENYRVGVD---EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (862)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~vI~~---D~~~~~~~---~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~ 138 (862)
|+|+|++||||||+|+.|++.++..+.+. ++...... ........+.+.....+..+.....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 68 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIR------------ 68 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHH------------
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhc------------
Confidence 78999999999999999999872111111 00100001 1112233343333333222211100
Q ss_pred ccccceeeccCceEEEEcccchhhHhhhhccceE-EEEEeceeeeeeeeeecccCC
Q 002962 139 RIGSKVIKGASSGVVIVDGTYALDARLRSLLDIR-VAVVGGVHFSLISKVQYDIGD 193 (862)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~-I~Vda~~~~~l~R~i~RD~~~ 193 (862)
.......+|++|...... .....+.. |+|+|+.+++.+|...|....
T Consensus 69 -------~~~~~~~~iid~~~~~~~-~~~~~~~~~i~L~~~~e~~~~R~~~R~~~~ 116 (129)
T PF13238_consen 69 -------RMNKGRNIIIDGILSNLE-LERLFDIKFIFLDCSPEELRKRLKKRGRKE 116 (129)
T ss_dssp -------HHTTTSCEEEEESSEEEC-ETTEEEESSEEEE--HHHHHHHHHCTTTSC
T ss_pred -------ccccCCcEEEecccchhc-ccccceeeEEEEECCHHHHHHHHHhCCCCC
Confidence 112345678888877542 22333344 999999999999988887544
No 173
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.10 E-value=1.3e-06 Score=88.50 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=32.5
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhcccee-----eeEEeeccccc
Q 002962 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK 553 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy~ 553 (862)
...+.+|.+.|++||||||+|+.|+..++ +.+++.|++..
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~ 48 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh
Confidence 34678999999999999999999998875 56666666643
No 174
>PLN02840 tRNA dimethylallyltransferase
Probab=98.09 E-value=1.9e-07 Score=105.81 Aligned_cols=108 Identities=20% Similarity=0.225 Sum_probs=64.5
Q ss_pred cCCeEEEeecCCCCCCcchHHHHhhhceeeEEEeeccc--ccccCCCC-CCCccchHHHHHhhhhhhcCCCccccccccc
Q 002962 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (862)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~~-~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~ 135 (862)
+....+|+|+||+||||||+|..|++.++..+|++|.+ |+++.... .|...+.....++|-++..-.+ .+.+.++.
T Consensus 18 ~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e-~ySv~~F~ 96 (421)
T PLN02840 18 TKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSD-DYSVGAFF 96 (421)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCC-ceeHHHHH
Confidence 34456899999999999999999999999999999994 77766433 2333333333344443333221 11111121
Q ss_pred cccccccceeeccCceEEEEcccchhhHhhhh
Q 002962 136 QKNRIGSKVIKGASSGVVIVDGTYALDARLRS 167 (862)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~ 167 (862)
.........+.......||+.|..++-..+..
T Consensus 97 ~~A~~~I~~i~~rgkiPIvVGGTGlYl~aLl~ 128 (421)
T PLN02840 97 DDARRATQDILNRGRVPIVAGGTGLYLRWYIY 128 (421)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccHHHHHHhc
Confidence 11111111112234457999999998765543
No 175
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.08 E-value=2.4e-06 Score=89.22 Aligned_cols=116 Identities=17% Similarity=0.139 Sum_probs=67.8
Q ss_pred EeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhh-hhcCCCccccccccccccccccc
Q 002962 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRIGSK 143 (862)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~-l~~~~~i~~p~~~~~~~~~~~~~ 143 (862)
|.|.|++||||||+|+.|++.+|+.+|+++++.+.......+ +...+.. +..|..+.-..+......+....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~-------~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~ 74 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTP-------LGKKAKEYMEKGELVPDEIVNQLVKERLTQN 74 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccH-------HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Confidence 789999999999999999999999999999986643322211 1111111 11222111111111111111100
Q ss_pred eeeccCceEEEEcccchhh---Hhhh---h-ccceEEEEEeceeeeeeeeeecc
Q 002962 144 VIKGASSGVVIVDGTYALD---ARLR---S-LLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~---~~l~---~-~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
.....-+|+||.---. ..+. . ..|.+|+++++.+..+.|...|.
T Consensus 75 ---~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 75 ---QDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred ---cccCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence 0113458999963322 1222 2 46899999999999888887774
No 176
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.08 E-value=2.8e-06 Score=86.07 Aligned_cols=29 Identities=31% Similarity=0.414 Sum_probs=24.2
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEE
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI 91 (862)
.+|+|.|++||||||+++.|+..++...+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~ 30 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKF 30 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccc
Confidence 47999999999999999999987654333
No 177
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.06 E-value=4.3e-06 Score=84.72 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=22.2
Q ss_pred EEeecCCCCCCcchHHHHhhhcee
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIG 87 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg 87 (862)
+|+|+|++||||||+++.|+..++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998765
No 178
>PRK02496 adk adenylate kinase; Provisional
Probab=98.06 E-value=1.2e-06 Score=89.39 Aligned_cols=136 Identities=15% Similarity=0.058 Sum_probs=74.0
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCcccccccccccccccc
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS 142 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~~ 142 (862)
+.|.|.|++||||||+|+.|++.+|+.++++|++.+.....+.+.. ...... +..|..+.-.........+...
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g---~~~~~~---~~~g~~~~~~~~~~~l~~~l~~ 75 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLG---IKAQGY---MDKGELVPDQLVLDLVQERLQQ 75 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhH---HHHHHH---HHCCCccCHHHHHHHHHHHHhC
Confidence 4589999999999999999999999999999987553222111100 001111 1112111100011111111100
Q ss_pred ceeeccCceEEEEcccch-------hhHh---hhhccceEEEEEeceeeeeeeeeecccCCccchhhHHhhhhhhhhc
Q 002962 143 KVIKGASSGVVIVDGTYA-------LDAR---LRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRK 210 (862)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l-------~~~~---l~~~~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~~~~p~~~k 210 (862)
.....-+|+||.-- +... +....|.+|+++++.+....|...|... ...++.+.+.+..|.+
T Consensus 76 ----~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~--dd~~~~~~~r~~~y~~ 147 (184)
T PRK02496 76 ----PDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRK--DDTEEVIRRRLEVYRE 147 (184)
T ss_pred ----cCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHH
Confidence 11123488898732 1111 1234689999999999988888777432 1233444444444444
No 179
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.05 E-value=1.3e-06 Score=88.73 Aligned_cols=117 Identities=14% Similarity=0.156 Sum_probs=67.5
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceeeecccccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~~~~r 598 (862)
+|.|.|++||||||+|+.|++.+|+.++|++|..+..-... ...+ ..+.+. +.+|..+.--.........
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~---~~~~----~~~~~~---~~~g~~~~~~~~~~ll~~~ 70 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSG---SENG----ELIESM---IKNGKIVPSEVTVKLLKNA 70 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcC---ChHH----HHHHHH---HHCCCcCCHHHHHHHHHHH
Confidence 47889999999999999999999999999999987421100 0000 001111 1122221110000000010
Q ss_pred cCceeeeecccceeEEEcceeccc---Hh---hh---hccceeeeeecccchheeheeeccc
Q 002962 599 SGFKELEVSEDCGVIIFEGVYALH---PE---IR---KSLDLWIAVVGGVHSHLISRVQRDK 651 (862)
Q Consensus 599 ~~~~~~~~~~~~~vVIvEG~~~~~---~~---l~---~~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (862)
. .... ..-+|++|..--. .. +. ...|..|+++++.+..+.|...|..
T Consensus 71 ~-----~~~~-~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~ 126 (183)
T TIGR01359 71 I-----QADG-SKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQ 126 (183)
T ss_pred H-----hccC-CCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence 0 0011 3567899975421 11 11 1467899999999999988888764
No 180
>PLN02200 adenylate kinase family protein
Probab=98.05 E-value=9e-07 Score=94.02 Aligned_cols=120 Identities=15% Similarity=0.177 Sum_probs=72.0
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceeeecc
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE 594 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~ 594 (862)
+.|.+|.|.|++||||||+|+.|++.+|+.+++++|..+.+-.. + +.+...+. ..+..|+.+.-......
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~----~---s~~~~~i~---~~~~~G~~vp~e~~~~~ 110 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIAS----N---SEHGAMIL---NTIKEGKIVPSEVTVKL 110 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhc----c---ChhHHHHH---HHHHcCCCCcHHHHHHH
Confidence 46889999999999999999999999999999999998742111 1 11111111 12233332211110000
Q ss_pred cccccCceeeeecccceeEEEcceecccH---hh----hhccceeeeeecccchheeheeecc
Q 002962 595 TGARSGFKELEVSEDCGVIIFEGVYALHP---EI----RKSLDLWIAVVGGVHSHLISRVQRD 650 (862)
Q Consensus 595 ~~~r~~~~~~~~~~~~~vVIvEG~~~~~~---~l----~~~~D~~I~v~~~~d~rl~Rri~Rd 650 (862)
...+. .. ....-+|+||..-... .+ ....|..|+++++.++.+.|...|.
T Consensus 111 l~~~l-----~~-~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~ 167 (234)
T PLN02200 111 IQKEM-----ES-SDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRN 167 (234)
T ss_pred HHHHH-----hc-CCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCc
Confidence 00111 00 1124589999653221 12 1246889999999999988888775
No 181
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.05 E-value=4.4e-06 Score=91.82 Aligned_cols=127 Identities=14% Similarity=0.146 Sum_probs=72.6
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce-eeEEEeecccccccCCCCCCCccch-----HHHHHhhhhhhcCCCccccccccc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVGVDEGNDLDSIDF-----DALVQNLQDLTEGKDTLIPMFDYQ 135 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L-g~~vI~~D~~~~~~~~~~~~~s~d~-----~~l~~~L~~l~~~~~i~~p~~~~~ 135 (862)
+.+|.++|++||||||+|+.|++.+ ++.+++.|.+...+......+.+.+ ..+.+.....
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 67 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAA-------------- 67 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHH--------------
Confidence 4678999999999999999999999 8999999998654322211111110 0111110000
Q ss_pred cccccccceeeccCceEEEEcccchhhH---hhhhc-----cce-EEEEEeceeeeeeeeeecccCCccchhhHHhhhhh
Q 002962 136 QKNRIGSKVIKGASSGVVIVDGTYALDA---RLRSL-----LDI-RVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFP 206 (862)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~~---~l~~~-----~D~-~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~~~~p 206 (862)
... . ......+|+++...... .+... +++ .++++++.+...+|...|.. .....+.+..++.
T Consensus 68 ----~~~-~--l~~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~--~~~~~~~i~~~~~ 138 (300)
T PHA02530 68 ----ALA-A--LKSGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGE--RAVPEDVLRSMFK 138 (300)
T ss_pred ----HHH-H--HHcCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCc--CCCCHHHHHHHHH
Confidence 000 0 01223577787765432 22211 233 58899999988888888832 2234555554444
Q ss_pred hhhcc
Q 002962 207 LFRKH 211 (862)
Q Consensus 207 ~~~k~ 211 (862)
.++.+
T Consensus 139 ~~~~~ 143 (300)
T PHA02530 139 QMKEY 143 (300)
T ss_pred HHHHh
Confidence 44443
No 182
>PRK14532 adenylate kinase; Provisional
Probab=98.05 E-value=4.3e-06 Score=85.45 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=65.7
Q ss_pred EeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhh-cCCCccccccccccccccccc
Q 002962 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLT-EGKDTLIPMFDYQQKNRIGSK 143 (862)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~-~~~~i~~p~~~~~~~~~~~~~ 143 (862)
|.|.|++||||||+|+.|++.+|+.+|++|++.+.....+.+ +...+..+. .|+.+.-...........
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~~~~--- 72 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSE-------LGQRVKGIMDRGELVSDEIVIALIEERL--- 72 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCH-------HHHHHHHHHHCCCccCHHHHHHHHHHHH---
Confidence 788999999999999999999999999999986643221111 111111111 222211000111011111
Q ss_pred eeeccCceEEEEcccchhh-------Hhhh---hccceEEEEEeceeeeeeeeeecc
Q 002962 144 VIKGASSGVVIVDGTYALD-------ARLR---SLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~-------~~l~---~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
.......-+|++|..--. ..+. ...|.+|++++|.+....|...|.
T Consensus 73 -~~~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~ 128 (188)
T PRK14532 73 -PEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRF 128 (188)
T ss_pred -hCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCc
Confidence 011123457889854321 1111 236789999999999888877663
No 183
>PLN02199 shikimate kinase
Probab=98.04 E-value=2.2e-06 Score=92.76 Aligned_cols=58 Identities=22% Similarity=0.353 Sum_probs=42.9
Q ss_pred EeccceehhhHHHHHHHHhcCCeEEEeecCCCCCCcchHHHHhhhceeeEEEeeccccccc
Q 002962 40 SFDHGYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV 100 (862)
Q Consensus 40 s~~~~y~~l~~~i~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~ 100 (862)
+|++. .|-+..+.... .-+...|.++|.+||||||+++.|++.+|+.+||+|.+....
T Consensus 83 ~~de~--~Lk~~a~~i~~-~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~ 140 (303)
T PLN02199 83 PFDED--ILKRKAEEVKP-YLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQA 140 (303)
T ss_pred CCCHH--HHHHHHHHHHH-HcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHH
Confidence 77664 24333333333 222346899999999999999999999999999999986653
No 184
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.04 E-value=3.9e-07 Score=86.28 Aligned_cols=111 Identities=20% Similarity=0.292 Sum_probs=59.8
Q ss_pred EeecCCCCCCcchhHhhhccceeeeEEeeccccccccc----ccCccCCCcccchhhhcccchhhcCCccccceeeeccc
Q 002962 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV----KDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (862)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~----~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~~ 595 (862)
|+|+|++||||||+|+.|++.++ ....|.++..... ....+......+.+.....+..+.....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 68 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG--DIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIR---------- 68 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC--HHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHH----------
T ss_pred CEEECCCCCCHHHHHHHHHHHHC--cHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhc----------
Confidence 78999999999999999999872 1112222111000 0001111222333333333332221110
Q ss_pred ccccCceeeeecccceeEEEcceecccHhhhhcccee-eeeecccchheeheeeccccc
Q 002962 596 GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLW-IAVVGGVHSHLISRVQRDKSR 653 (862)
Q Consensus 596 ~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~-I~v~~~~d~rl~Rri~Rd~~~ 653 (862)
.......+|++|++.... .....+.. |+++++.+.+..|...|....
T Consensus 69 ----------~~~~~~~~iid~~~~~~~-~~~~~~~~~i~L~~~~e~~~~R~~~R~~~~ 116 (129)
T PF13238_consen 69 ----------RMNKGRNIIIDGILSNLE-LERLFDIKFIFLDCSPEELRKRLKKRGRKE 116 (129)
T ss_dssp ----------HHTTTSCEEEEESSEEEC-ETTEEEESSEEEE--HHHHHHHHHCTTTSC
T ss_pred ----------ccccCCcEEEecccchhc-ccccceeeEEEEECCHHHHHHHHHhCCCCC
Confidence 123457889999987642 22233334 999999999999988876543
No 185
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.03 E-value=6.7e-06 Score=85.05 Aligned_cols=41 Identities=32% Similarity=0.389 Sum_probs=34.6
Q ss_pred cCCeEEEeecCCCCCCcchHHHHhhhce-----eeEEEeecccccc
Q 002962 59 KGGIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRVG 99 (862)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~L-----g~~vI~~D~~~~~ 99 (862)
..++.+|+|+|.+||||||+++.|+..+ ++.+++.|++...
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~ 66 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHG 66 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhh
Confidence 4667899999999999999999999876 4677888887653
No 186
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.02 E-value=4.1e-06 Score=87.76 Aligned_cols=116 Identities=16% Similarity=0.086 Sum_probs=66.1
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhh-hcCCCcccccccccccccccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKNRIGS 142 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l-~~~~~i~~p~~~~~~~~~~~~ 142 (862)
.|.|.|++||||||+|+.|++.+|+.+|+++++.+.......+ +...+... ..|..+.-.............
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~-------~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~ 74 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTE-------LGKEAKSYMDAGELVPDEIVIGLVKERLAQ 74 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccch-------HHHHHHHHHHcCCcCCHHHHHHHHHHHHhc
Confidence 4889999999999999999999999999998876633222111 11111111 112111100111111111100
Q ss_pred ceeeccCceEEEEcccchhh---Hhh----h---hccceEEEEEeceeeeeeeeeecc
Q 002962 143 KVIKGASSGVVIVDGTYALD---ARL----R---SLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l~~---~~l----~---~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
.....-+|+||.---. ..+ . ...|.+|+++++.+..+.|...|.
T Consensus 75 ----~~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 128 (215)
T PRK00279 75 ----PDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRR 128 (215)
T ss_pred ----cCccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCc
Confidence 1112248899952221 112 1 235799999999999888887774
No 187
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.01 E-value=6.6e-06 Score=83.92 Aligned_cols=105 Identities=19% Similarity=0.227 Sum_probs=61.6
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhce-----eeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCcccccccc
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDY 134 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~L-----g~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~ 134 (862)
..+.+|+|+|++||||||+|+.|+..+ ++.+++.|.+.+.+........-+.......+..+.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~~------------ 83 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVA------------ 83 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHHHHH------------
Confidence 556899999999999999999999876 256788888765443211111111111111111000
Q ss_pred ccccccccceeeccCceEEEEcccchhh---Hhhhhccc----eEEEEEeceeeeeee
Q 002962 135 QQKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSLLD----IRVAVVGGVHFSLIS 185 (862)
Q Consensus 135 ~~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~~D----~~I~Vda~~~~~l~R 185 (862)
........+||++.+.... ..+...+. +.+|++++.+.+..|
T Consensus 84 ---------~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 84 ---------KLFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred ---------HHHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh
Confidence 0001234578888876654 22333322 558999998887666
No 188
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.99 E-value=3.6e-06 Score=83.48 Aligned_cols=104 Identities=22% Similarity=0.257 Sum_probs=59.9
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhce-----eeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccc
Q 002962 61 GIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L-----g~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~ 135 (862)
++.+|-|+|.+||||||+|+.|.+.| .+.+++.|.+...+...-....-|+....+.+..+..
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~------------ 68 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAK------------ 68 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHH------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHH------------
Confidence 36789999999999999999999877 3788999999876654322222233322222221110
Q ss_pred cccccccceeeccCceEEEEcccchhh---Hhhhhccc----eEEEEEeceeeeeee
Q 002962 136 QKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSLLD----IRVAVVGGVHFSLIS 185 (862)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~~D----~~I~Vda~~~~~l~R 185 (862)
.......+||+..+-.++ ...+..+. +-|||+||.+++.+|
T Consensus 69 ---------ll~~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~R 116 (156)
T PF01583_consen 69 ---------LLADQGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKR 116 (156)
T ss_dssp ---------HHHHTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHH
T ss_pred ---------HHHhCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHh
Confidence 011223466666665555 23444333 669999998887444
No 189
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.93 E-value=7.5e-06 Score=82.76 Aligned_cols=40 Identities=33% Similarity=0.412 Sum_probs=33.0
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhcee-----eEEEeeccccccc
Q 002962 61 GIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGV 100 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~ 100 (862)
...+|+|+|++||||||+|+.|+..+. +.+++.|.+...+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~ 47 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNL 47 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHH
Confidence 345899999999999999999998772 6778999875543
No 190
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.92 E-value=9.4e-06 Score=82.20 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=30.8
Q ss_pred EEEeecCCCCCCcchHHHHhhhceee--EEEeecccccc
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGC--TLISMENYRVG 99 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~--~vI~~D~~~~~ 99 (862)
.+|.++|++||||||+|+.|++.++. ..++.|+|+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~ 41 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA 41 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh
Confidence 47999999999999999999998764 34688887554
No 191
>PRK00625 shikimate kinase; Provisional
Probab=97.91 E-value=2.7e-06 Score=86.26 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=32.6
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
.|.|+|.+||||||+++.|++.++..++++|++-..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~ 37 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVS 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHH
Confidence 377899999999999999999999999999988653
No 192
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.90 E-value=8.5e-06 Score=81.26 Aligned_cols=34 Identities=29% Similarity=0.483 Sum_probs=31.4
Q ss_pred EeecCCCCCCcchHHHHhhhceeeEEEeeccccc
Q 002962 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (862)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (862)
|+|+|++||||||+|+.|++.+|..+++.|+++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~ 34 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHP 34 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccC
Confidence 5789999999999999999999999999999854
No 193
>PRK13808 adenylate kinase; Provisional
Probab=97.88 E-value=4.7e-06 Score=92.28 Aligned_cols=115 Identities=17% Similarity=0.103 Sum_probs=66.4
Q ss_pred EeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccccccccce
Q 002962 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKV 144 (862)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~~~~ 144 (862)
|.|.||+||||||+|..|++.+|+.+|++|++.+.......+... .+.+.+ ..|..+.-..+.....++...
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~---~~~~~~---~~G~lVPdeiv~~li~e~l~~-- 74 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGL---KAKDIM---ASGGLVPDEVVVGIISDRIEQ-- 74 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhH---HHHHHH---HcCCCCCHHHHHHHHHHHHhc--
Confidence 788999999999999999999999999999987643222222110 111111 112111100111111111111
Q ss_pred eeccCceEEEEcccchhhH---h----hh---hccceEEEEEeceeeeeeeeeec
Q 002962 145 IKGASSGVVIVDGTYALDA---R----LR---SLLDIRVAVVGGVHFSLISKVQY 189 (862)
Q Consensus 145 ~~~~~~~vVIvEG~~l~~~---~----l~---~~~D~~I~Vda~~~~~l~R~i~R 189 (862)
.....-+|+||.---.. . +. -..|++|++++|.++.+.|...|
T Consensus 75 --~~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R 127 (333)
T PRK13808 75 --PDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETR 127 (333)
T ss_pred --ccccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcC
Confidence 11123488898553221 1 11 14799999999999988887766
No 194
>PLN02748 tRNA dimethylallyltransferase
Probab=97.86 E-value=3.6e-06 Score=97.12 Aligned_cols=107 Identities=24% Similarity=0.226 Sum_probs=67.3
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecc--cccccCCCC-CCCccchHHHHHhhhhhhcCCCcccccccccc
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN--YRVGVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~--~~~~~~~~~-~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~ 136 (862)
+...+|+|+||+||||||||..||+.+++.+|++|. +|++++-.. .|...++....++|-++..-.+ .+.+.+|..
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e-~ysv~~F~~ 98 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSV-EFTAKDFRD 98 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCC-cCcHHHHHH
Confidence 445689999999999999999999999999999997 599877543 3333344444445444443221 122222222
Q ss_pred ccccccceeeccCceEEEEcccchhhHhhhh
Q 002962 137 KNRIGSKVIKGASSGVVIVDGTYALDARLRS 167 (862)
Q Consensus 137 ~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~ 167 (862)
........+.....-.|||.|..+|-..+..
T Consensus 99 ~A~~~I~~I~~rgk~PIlVGGTglYi~aLl~ 129 (468)
T PLN02748 99 HAVPLIEEILSRNGLPVIVGGTNYYIQALVS 129 (468)
T ss_pred HHHHHHHHHHhcCCCeEEEcChHHHHHHHHc
Confidence 1111111122344557999999998765553
No 195
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.86 E-value=4.4e-06 Score=84.95 Aligned_cols=117 Identities=18% Similarity=0.174 Sum_probs=66.8
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCcccccee---eec
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPI---FDL 593 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~---yd~ 593 (862)
..+|+|.|++||||||+|+.|++.+|...+++|++.+..... ..+ ....+...+ .+|.. .|. +..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~----~~~---~~~~~~~~~---~~~~~--~~~~~~~~~ 70 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVAS----GSE---RGKQLQAIM---ESGDL--VPLDTVLDL 70 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhc----CCH---HHHHHHHHH---HCCCC--CCHHHHHHH
Confidence 357899999999999999999999999999999987642100 000 000111111 11111 110 000
Q ss_pred ccccccCceeeeecccceeEEEcceeccc---Hhhh---hccceeeeeecccchheeheeecc
Q 002962 594 ETGARSGFKELEVSEDCGVIIFEGVYALH---PEIR---KSLDLWIAVVGGVHSHLISRVQRD 650 (862)
Q Consensus 594 ~~~~r~~~~~~~~~~~~~vVIvEG~~~~~---~~l~---~~~D~~I~v~~~~d~rl~Rri~Rd 650 (862)
..++. .........+|++|..-.. ..+. ...|..|+++++.+..+.|...|.
T Consensus 71 -l~~~~----~~~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 128 (188)
T TIGR01360 71 -LKDAM----VAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRA 128 (188)
T ss_pred -HHHHH----HcccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 00000 0001224567889865321 1111 246889999999999888877775
No 196
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.85 E-value=6.8e-06 Score=86.99 Aligned_cols=121 Identities=18% Similarity=0.160 Sum_probs=69.8
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhh-cCCCccccccccccccc
Q 002962 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLT-EGKDTLIPMFDYQQKNR 139 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~-~~~~i~~p~~~~~~~~~ 139 (862)
.|+.|.|.|++||||||+|+.|++.+|+.+|++|++.+.......+ +.+.+.... .|..+.-..+.......
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~-------lg~~i~~~~~~G~lvpd~iv~~lv~~~ 77 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTT-------IGKEIQKVVTSGNLVPDNLVIAIVKDE 77 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCCh-------HHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence 3455999999999999999999999999999999987743322111 111222221 12211101111111111
Q ss_pred cccceeeccCceEEEEcccch-hh--Hhhh--hccceEEEEEeceeeeeeeeeecc
Q 002962 140 IGSKVIKGASSGVVIVDGTYA-LD--ARLR--SLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l-~~--~~l~--~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
... .......-+|++|.-- .. ..+. ...|.+++++++.+..+.|...|.
T Consensus 78 l~~--~~~~~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr 131 (229)
T PTZ00088 78 IAK--VTDDCFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRR 131 (229)
T ss_pred HHh--hccccCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCc
Confidence 100 0012234689999632 11 1111 346889999999998888877774
No 197
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.85 E-value=1.5e-05 Score=79.46 Aligned_cols=48 Identities=29% Similarity=0.407 Sum_probs=40.1
Q ss_pred hcCCeEEEeecCCCCCCcchHHHHhhhce---e--eEEEeecccccccCCCCC
Q 002962 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGND 105 (862)
Q Consensus 58 ~~~~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~~~~~ 105 (862)
.+.++++|=+||.|||||||+|.+|.+.| | +.++|.|.+..++...-.
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLg 71 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLG 71 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCC
Confidence 45667999999999999999999999877 3 788999999887764433
No 198
>PRK13949 shikimate kinase; Provisional
Probab=97.84 E-value=3.7e-06 Score=84.92 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=32.1
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeeccccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~ 553 (862)
-|.|.|++||||||+++.|++.++..++++|++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~ 37 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIE 37 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHH
Confidence 37789999999999999999999999999998765
No 199
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.81 E-value=2.2e-05 Score=93.58 Aligned_cols=54 Identities=24% Similarity=0.267 Sum_probs=41.5
Q ss_pred hhHHHHHHHH-hcCCeEEEeecCCCCCCcchHHHHhhhceee------EEEeecccccccC
Q 002962 48 LVKSIQELRE-KKGGIVTVGIGGPSGSGKTSLAEKLASVIGC------TLISMENYRVGVD 101 (862)
Q Consensus 48 l~~~i~~~~~-~~~~~~iIgItG~sGSGKSTlA~~La~~Lg~------~vI~~D~~~~~~~ 101 (862)
+++.+..... +..+..+|.|+|.+||||||+|+.|++.|+. .+++.|.+.+.+.
T Consensus 377 V~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ 437 (568)
T PRK05537 377 VVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLS 437 (568)
T ss_pred HHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhcc
Confidence 4444444443 3456679999999999999999999999884 8899998866554
No 200
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.81 E-value=1.3e-05 Score=85.78 Aligned_cols=133 Identities=16% Similarity=0.213 Sum_probs=72.7
Q ss_pred EEeecCCCCCCcchHHHHhhhcee-----eEEEeecccccccCCCCCCCccchHH-HHHhhhhhhcCCCccccccccccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDEGNDLDSIDFDA-LVQNLQDLTEGKDTLIPMFDYQQK 137 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~~~~~~~s~d~~~-l~~~L~~l~~~~~i~~p~~~~~~~ 137 (862)
+|.++|.+||||||+|+.|++.++ +.+++.|.+...+..+.. ..+. +.+....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~~----~~e~~~~~~~~~----------------- 59 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWKE----KYEEFIRDSTLY----------------- 59 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhhH----HhHHHHHHHHHH-----------------
Confidence 488999999999999999998763 566777765432211100 0010 1110000
Q ss_pred cccccceeeccCceEEEEcccchhhH---hhhhc------cceEEEEEeceeeeeeeeeecccCCccchhhHHhhhhhhh
Q 002962 138 NRIGSKVIKGASSGVVIVDGTYALDA---RLRSL------LDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLF 208 (862)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~l~~~---~l~~~------~D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~~~~p~~ 208 (862)
.+.. . ......||++|...... .+... -...||+++|.+.+.+|...|... ..++.++. ++
T Consensus 60 -~i~~-~--l~~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~---~~~~~i~~---l~ 129 (249)
T TIGR03574 60 -LIKT-A--LKNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEK---IPNEVIKD---MY 129 (249)
T ss_pred -HHHH-H--HhCCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCC---CCHHHHHH---HH
Confidence 0000 0 11234688888765432 22211 136789999999998887776421 22333443 33
Q ss_pred hcccCCCc----ccceeecCCcc
Q 002962 209 RKHIEPDL----HHAQIRINNRF 227 (862)
Q Consensus 209 ~k~Iep~~----~~ADiII~N~~ 227 (862)
.+|-+|.. ..++++|+.+.
T Consensus 130 ~r~e~p~~~~~wd~~~~~vd~~~ 152 (249)
T TIGR03574 130 EKFDEPGTKYSWDLPDLTIDTTK 152 (249)
T ss_pred HhhCCCCCCCCccCceEEecCCC
Confidence 33333432 34889887763
No 201
>PLN02165 adenylate isopentenyltransferase
Probab=97.81 E-value=6.1e-06 Score=91.14 Aligned_cols=105 Identities=18% Similarity=0.184 Sum_probs=62.3
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEeeccc--ccccCCCCC-CCccchHHHHHhhhhhhcCC--Cccccccccc
Q 002962 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGND-LDSIDFDALVQNLQDLTEGK--DTLIPMFDYQ 135 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~~~-~~s~d~~~l~~~L~~l~~~~--~i~~p~~~~~ 135 (862)
...+|+|+||+||||||||..||..++..+|++|.+ |++++-... |...+...+.+++-+..... ......|...
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~~~ 121 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFRSL 121 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHHHH
Confidence 344899999999999999999999999999999996 777665432 33233222333333322221 1222222211
Q ss_pred cccccccceeeccCceEEEEcccchhhHhhhh
Q 002962 136 QKNRIGSKVIKGASSGVVIVDGTYALDARLRS 167 (862)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~ 167 (862)
....+. .+......+|++.|..+|-..+..
T Consensus 122 a~~~I~--~i~~~~~~PI~vGGTglYi~aLl~ 151 (334)
T PLN02165 122 ASLSIS--EITSRQKLPIVAGGSNSFIHALLA 151 (334)
T ss_pred HHHHHH--HHHHCCCcEEEECChHHHHHHHHc
Confidence 111111 122244557888999988755543
No 202
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.80 E-value=5.2e-06 Score=84.87 Aligned_cols=117 Identities=18% Similarity=0.109 Sum_probs=66.2
Q ss_pred EeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceeeeccccccc
Q 002962 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARS 599 (862)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~~~~r~ 599 (862)
|.|.|++||||||+|+.|++.+|+.++++|+..+...... +-....+.+. +.+|..+.-.........+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~-------~~~~~~~~~~---~~~g~~~~~~~~~~l~~~~l 71 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASG-------TELGKKAKEY---IDSGKLVPDEIVIKLLKERL 71 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcC-------ChHHHHHHHH---HHcCCccCHHHHHHHHHHHH
Confidence 6789999999999999999999999999999886421111 0000011111 11122111000000001100
Q ss_pred CceeeeecccceeEEEcceeccc------Hhhhh---ccceeeeeecccchheeheeeccc
Q 002962 600 GFKELEVSEDCGVIIFEGVYALH------PEIRK---SLDLWIAVVGGVHSHLISRVQRDK 651 (862)
Q Consensus 600 ~~~~~~~~~~~~vVIvEG~~~~~------~~l~~---~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (862)
.......-+|++|.-... ..... ..+..|+++++.+..+.|...|..
T Consensus 72 -----~~~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~ 127 (194)
T cd01428 72 -----KKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRI 127 (194)
T ss_pred -----hcccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence 000023457888854321 11222 568899999999999998887753
No 203
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.80 E-value=5.2e-06 Score=91.93 Aligned_cols=40 Identities=23% Similarity=0.344 Sum_probs=35.0
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhccceeeeEEeeccccc
Q 002962 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~ 553 (862)
.++...|+++|++||||||+++.|++.+|+.++++|....
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~ 169 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIE 169 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHH
Confidence 3456789999999999999999999999999999986643
No 204
>PRK12338 hypothetical protein; Provisional
Probab=97.80 E-value=5.2e-06 Score=91.29 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=31.9
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeeccc
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~ 96 (862)
.+|.+|+|+|++||||||+|+.||+.+|+..+..+|+
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~ 38 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNIKHLIETDF 38 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChH
Confidence 3578999999999999999999999999887755554
No 205
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.79 E-value=6.7e-06 Score=80.76 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=31.6
Q ss_pred EeecCCCCCCcchhHhhhccceeeeEEeeccccc
Q 002962 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (862)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~ 553 (862)
|.|.|++||||||+|+.|++.++...++.|++..
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~ 35 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIE 35 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHH
Confidence 6789999999999999999999999999998865
No 206
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=97.78 E-value=3.6e-06 Score=102.40 Aligned_cols=122 Identities=15% Similarity=0.199 Sum_probs=74.6
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeeccccccccc----ccCccCCCcccchhhhcccchhh----------cC
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV----KDFKYDDFSSLDLSLLSKNISDI----------RN 582 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~----~~~n~~~p~t~D~~lL~~~L~~L----------~~ 582 (862)
..+|.|.||+||||||+|+.|++.|+..+++.|.+|+.-.. ...+++ |.+.+.+.+..+ .+
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 516 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALD-----DEAAIAALARGLPVRFEGDRIWLG 516 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCC-----CHHHHHHHHhcCCeeecCCeEEEC
Confidence 45899999999999999999999999999999999997321 111221 222222222211 11
Q ss_pred Cccc-----------------cceeeecccccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeh
Q 002962 583 GRRT-----------------KVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLIS 645 (862)
Q Consensus 583 g~~v-----------------~~P~yd~~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~R 645 (862)
|+.+ .+|.++.....+. .......-+|+||--++.- +.+..|++||++++.++|-.|
T Consensus 517 ~~~~~~~i~~~~v~~~~s~~a~~~~vr~~l~~~q-----r~~~~~~~~v~eGRdigtv-v~p~a~~kifl~a~~~~Ra~R 590 (661)
T PRK11860 517 GEDVTDAIRTEAAGMGASRVSALPAVRAALLALQ-----RSFRRLPGLVADGRDMGTV-IFPDAALKVFLTASAEARAER 590 (661)
T ss_pred CeEchhhhCcHHHHHHHHHHhCCHHHHHHHHHHH-----HHHhhCCCEEEECCCCccE-ECCCCCeEEEEECChhHHHHH
Confidence 1111 1111111111100 0001123489999988762 224478999999999999999
Q ss_pred eeec
Q 002962 646 RVQR 649 (862)
Q Consensus 646 ri~R 649 (862)
|...
T Consensus 591 r~~~ 594 (661)
T PRK11860 591 RYKQ 594 (661)
T ss_pred HHHH
Confidence 9774
No 207
>PRK12338 hypothetical protein; Provisional
Probab=97.77 E-value=6.6e-06 Score=90.52 Aligned_cols=39 Identities=23% Similarity=0.474 Sum_probs=34.8
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
+|.+|.|+|+|||||||+|+.|+..+|...+..+|+.+.
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~ 41 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIRE 41 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHH
Confidence 589999999999999999999999999887767777665
No 208
>PRK14530 adenylate kinase; Provisional
Probab=97.77 E-value=9.7e-06 Score=84.94 Aligned_cols=118 Identities=14% Similarity=0.154 Sum_probs=66.0
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceeeecccccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~~~~r 598 (862)
.|.|.|++||||||+|+.|++.+|..++++|++.+.......+ +.++. +....+ .+..|..+.-..........
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~--~~~~~-~~~~~~---~~~~g~~~~d~~~~~~l~~~ 78 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDIS--DMDTE-YDTPGE---YMDAGELVPDAVVNEIVEEA 78 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcc--cccch-HHHHHH---HHHcCCCCCHHHHHHHHHHH
Confidence 4788999999999999999999999999999998853211110 00000 000010 11222211110000000000
Q ss_pred cCceeeeecccceeEEEcceecccH---hhh--hccceeeeeecccchheeheeecc
Q 002962 599 SGFKELEVSEDCGVIIFEGVYALHP---EIR--KSLDLWIAVVGGVHSHLISRVQRD 650 (862)
Q Consensus 599 ~~~~~~~~~~~~~vVIvEG~~~~~~---~l~--~~~D~~I~v~~~~d~rl~Rri~Rd 650 (862)
....+-+|++|..-... .+. ...|..|+++++.+..+.|...|.
T Consensus 79 --------l~~~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~ 127 (215)
T PRK14530 79 --------LSDADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRR 127 (215)
T ss_pred --------HhcCCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCC
Confidence 01124578898433221 121 237899999999998887776664
No 209
>PRK14527 adenylate kinase; Provisional
Probab=97.77 E-value=6e-06 Score=84.84 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=36.6
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
..+.+|.|.||+||||||+|+.|++.++...+++|+..+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~ 43 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRD 43 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4577899999999999999999999999999999999875
No 210
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.77 E-value=3.1e-06 Score=103.85 Aligned_cols=130 Identities=18% Similarity=0.248 Sum_probs=76.7
Q ss_pred EEEeecCCCCCCcchhHhhhccceeeeEEeecccccccccc----cCccCCCcccchhhhcccchhhcCCccccc-----
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK----DFKYDDFSSLDLSLLSKNISDIRNGRRTKV----- 588 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~----~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~----- 588 (862)
.+|+|+||+||||||+|+.|++.+|..+++...+|+..... ..+.++ ...|.+.+.+.+..+..+..+.+
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDA-ELVDEQVVTEAVGEFFTGLHFDISVDPD 80 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcch-hhhhhhhhHHHHHHHHhCCcEEEecCCC
Confidence 37999999999999999999999999999999999873211 111111 11122333333333222111111
Q ss_pred ------------------------------eeeecccccccCceeeeeccc-------ceeEEEcceecccHhhhhccce
Q 002962 589 ------------------------------PIFDLETGARSGFKELEVSED-------CGVIIFEGVYALHPEIRKSLDL 631 (862)
Q Consensus 589 ------------------------------P~yd~~~~~r~~~~~~~~~~~-------~~vVIvEG~~~~~~~l~~~~D~ 631 (862)
|........+. .......+ ..-+|+||--+++-- .+..|+
T Consensus 81 ~~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~q--r~~~~~~~~~~~~~~~~~~v~eGRdigtvv-~p~a~~ 157 (712)
T PRK09518 81 SPGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQ--RAYIAREASADSFSGGLGIVAEGRDITTVV-APDAEV 157 (712)
T ss_pred CcEEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHHH--HHHHhhcCccccccccCcEEEecCccceEE-ecCCCe
Confidence 11000000000 00000011 125999999988622 234699
Q ss_pred eeeeecccchheeheeeccc
Q 002962 632 WIAVVGGVHSHLISRVQRDK 651 (862)
Q Consensus 632 ~I~v~~~~d~rl~Rri~Rd~ 651 (862)
++|++++.++|..||..+..
T Consensus 158 K~~l~A~~~~Ra~Rr~~~~~ 177 (712)
T PRK09518 158 RILLTAREEVRQARRSGQDR 177 (712)
T ss_pred EEEEECCHHHHHHHHHHhhh
Confidence 99999999999999988865
No 211
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.76 E-value=1.2e-05 Score=82.51 Aligned_cols=158 Identities=12% Similarity=0.059 Sum_probs=75.6
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhc-cc-chhhcCCccccceeeec
Q 002962 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLS-KN-ISDIRNGRRTKVPIFDL 593 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~-~~-L~~L~~g~~v~~P~yd~ 593 (862)
++++|.|+|||||||||+++.|.+...-...+...--++...++.+ -.|+..+. +. -..+..|.-+.+-.|.-
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~-----G~dY~fvs~~~F~~~i~~~~f~e~~~~~g 77 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEE-----GKTYFFLTIEEFKKGIADGEFLEWAEVHD 77 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCC-----CceeEeCCHHHHHHHHHcCCeEEEEEECC
Confidence 5788999999999999999999876531122221111111111111 11111111 11 22334455454444432
Q ss_pred cc-ccccCceee-eecccceeEEEcceecccHhhhhccc---eeeeeeccc-chheeheeecccccccccccc-cceehh
Q 002962 594 ET-GARSGFKEL-EVSEDCGVIIFEGVYALHPEIRKSLD---LWIAVVGGV-HSHLISRVQRDKSRMGCFMSQ-NDIMMT 666 (862)
Q Consensus 594 ~~-~~r~~~~~~-~~~~~~~vVIvEG~~~~~~~l~~~~D---~~I~v~~~~-d~rl~Rri~Rd~~~rg~~~~~-~~~~~~ 666 (862)
.. |... +.+ .......++|++.-.-+...++..+. ..||+.+|. +....|+..|+... .+. .+.+..
T Consensus 78 ~~YGt~~--~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s----~e~i~~Rl~~ 151 (186)
T PRK14737 78 NYYGTPK--AFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDS----EESIEKRIEN 151 (186)
T ss_pred eeecCcH--HHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCC----HHHHHHHHHH
Confidence 21 1110 011 11234578888755544445555443 578998865 55555555554221 111 111221
Q ss_pred hhhhhhhcccccccccccccccC
Q 002962 667 VFPMFQQHIEPHLVHAHLKIRND 689 (862)
Q Consensus 667 v~p~~~~~I~p~~~~ADivI~n~ 689 (862)
..+ .. .....+|.+|.|+
T Consensus 152 ~~~-e~----~~~~~~D~vI~N~ 169 (186)
T PRK14737 152 GII-EL----DEANEFDYKIIND 169 (186)
T ss_pred HHH-HH----hhhccCCEEEECc
Confidence 111 11 1246789999987
No 212
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=97.74 E-value=4.2e-05 Score=76.67 Aligned_cols=160 Identities=16% Similarity=0.230 Sum_probs=108.9
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhcee-----eEEEeeccccc----ccC--------C-----CCCCCccchHHHHHhh
Q 002962 61 GIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRV----GVD--------E-----GNDLDSIDFDALVQNL 118 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~----~~~--------~-----~~~~~s~d~~~l~~~L 118 (862)
+..+|+|+|.||+|-||+...+.+.+. +..|..|.|++ .++ . .-.|++-|+..|.+.+
T Consensus 4 KhPiIavTGSSGAGTTTts~aFrKiF~~~~I~aa~iEGDsFHR~tRpeMd~~Irkar~~GrhisyFgpeANdf~~LE~~f 83 (289)
T COG3954 4 KHPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTF 83 (289)
T ss_pred CCceEEEecCCCCCcccHHHHHHHHHHhcCccHhhhccccccccCchhHHHHHHHHHHcCCcceecCccccchHHHHHHH
Confidence 347899999999999999999987664 45688899865 111 1 1247888999998887
Q ss_pred hhhhcCCCccccc----------cccccccccccceeeccCceEEEEcccchhh----HhhhhccceEEEEEeceeeeee
Q 002962 119 QDLTEGKDTLIPM----------FDYQQKNRIGSKVIKGASSGVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSLI 184 (862)
Q Consensus 119 ~~l~~~~~i~~p~----------~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~----~~l~~~~D~~I~Vda~~~~~l~ 184 (862)
...-....-.... |....+.-.+++.. ..+.+++..||..... -.+...+|+.|-|.-=.+....
T Consensus 84 ~eYg~~G~Gr~R~YlHt~dEAvp~nq~PGTFTpW~~l-pe~sDvLFYEGLHGgvVt~~~nvAqHvDlliGvVPivNLEWI 162 (289)
T COG3954 84 IEYGQSGKGRSRKYLHTYDEAVPWNQVPGTFTPWQPL-PEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLEWI 162 (289)
T ss_pred HHhcccCCcchhhhhhchhhcCccCCCCCCCCCcccC-CCccceeeeeccccceecCcccHhhhhceeeeeeeEeeHHHH
Confidence 7654322111111 22222222233222 2347899999987754 3667889999888766666666
Q ss_pred eeeecccCCcc-chhhHHhhh---hhhhhcccCCCccccee
Q 002962 185 SKVQYDIGDSC-SLDSLIDSI---FPLFRKHIEPDLHHAQI 221 (862)
Q Consensus 185 R~i~RD~~~~~-~~e~~~~~~---~p~~~k~Iep~~~~ADi 221 (862)
..+.||..+|+ +.+...+.+ ++.|-.||-|.-.+-++
T Consensus 163 QK~~RDt~~RGhSrEAVmDsivRsMdDYinyItPQFSrThI 203 (289)
T COG3954 163 QKLIRDTSERGHSREAVMDSVVRSMDDYINYITPQFSRTHI 203 (289)
T ss_pred HHHHhcccccCccHHHHHHHHHHhhhhHHhhcCcccccccc
Confidence 66789988884 666666644 78999999998888776
No 213
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.71 E-value=2.9e-05 Score=75.16 Aligned_cols=101 Identities=22% Similarity=0.260 Sum_probs=72.2
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeeccccc------ccCCCCCCCccchHHHHHhhhhhhcCCCcccccccccc
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV------GVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~------~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~ 136 (862)
+-|.|+|-+|+||||+|..||+.+|...|.+.++.+ ++++...--.+|-+.+...|..+..+..
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg---------- 77 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEGG---------- 77 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhcCC----------
Confidence 448999999999999999999999999999998744 4554444455777777777775432211
Q ss_pred ccccccceeeccCceEEEEcccchhhHhhhhccceEEEEEeceeeeeeeeeecc
Q 002962 137 KNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 137 ~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
.||=.-|.-+| -...||+++.+.+|...-..|.-.|-
T Consensus 78 --------------~IVDyHgCd~F---perwfdlVvVLr~~~s~LY~RL~sRg 114 (176)
T KOG3347|consen 78 --------------NIVDYHGCDFF---PERWFDLVVVLRTPNSVLYDRLKSRG 114 (176)
T ss_pred --------------cEEeecccCcc---chhheeEEEEEecCchHHHHHHHHcC
Confidence 12222233333 12568999999999998877777665
No 214
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.70 E-value=2.3e-05 Score=81.09 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=23.9
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhcee
Q 002962 61 GIVTVGIGGPSGSGKTSLAEKLASVIG 87 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg 87 (862)
...+|+|.|++||||||+++.|+..++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 446799999999999999999998765
No 215
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.70 E-value=2e-05 Score=79.07 Aligned_cols=125 Identities=14% Similarity=0.066 Sum_probs=76.2
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccccc
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~ 139 (862)
..+.||-|.|++||||-|.|..+++.+|+..+|++++.+.-.... ++-.-.++.+.+ ..|.-+........
T Consensus 6 ~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~--gse~g~~I~~~i---~~G~iVP~ei~~~L---- 76 (195)
T KOG3079|consen 6 DKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASA--GSERGALIKEII---KNGDLVPVEITLSL---- 76 (195)
T ss_pred cCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccc--cChHHHHHHHHH---HcCCcCcHHHHHHH----
Confidence 457899999999999999999999999999999999866433221 111112222221 22322111111000
Q ss_pred cccceeeccCceEEEEcccchh-------hHhhhhccceEEEEEeceeeeeeeeeecccCC
Q 002962 140 IGSKVIKGASSGVVIVDGTYAL-------DARLRSLLDIRVAVVGGVHFSLISKVQYDIGD 193 (862)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l~-------~~~l~~~~D~~I~Vda~~~~~l~R~i~RD~~~ 193 (862)
...+........-.++||.=-- +..+....|+++|+||+.++++.|.+.|....
T Consensus 77 L~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~ 137 (195)
T KOG3079|consen 77 LEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSN 137 (195)
T ss_pred HHHHHHhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccC
Confidence 0111111122223777775332 22333356999999999999999999998763
No 216
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.69 E-value=1.9e-05 Score=78.00 Aligned_cols=37 Identities=32% Similarity=0.561 Sum_probs=30.2
Q ss_pred EEeecCCCCCCcchHHHHhhhce---e--eEEEeeccccccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGV 100 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~ 100 (862)
+|.|+|.+||||||+|+.|+..+ | +.+++.|.+...+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l 42 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGL 42 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhh
Confidence 47899999999999999999987 4 5567778776533
No 217
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.68 E-value=1e-05 Score=84.36 Aligned_cols=116 Identities=19% Similarity=0.210 Sum_probs=66.5
Q ss_pred EeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchh-hcCCccccceeeecccccc
Q 002962 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDLETGAR 598 (862)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~-L~~g~~v~~P~yd~~~~~r 598 (862)
|.|.||+||||||+|+.|++.+|+.+||++|..+..-... .+ +.+.+.. +.+|..+.--.......++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~----~~-------~~~~~~~~~~~g~~vp~~~~~~l~~~~ 70 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAG----TP-------LGKKAKEYMEKGELVPDEIVNQLVKER 70 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccc----cH-------HHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999999999999987421110 00 0111111 2223222111111111111
Q ss_pred cCceeeeecccceeEEEcceeccc---Hhhh---h-ccceeeeeecccchheeheeecc
Q 002962 599 SGFKELEVSEDCGVIIFEGVYALH---PEIR---K-SLDLWIAVVGGVHSHLISRVQRD 650 (862)
Q Consensus 599 ~~~~~~~~~~~~~vVIvEG~~~~~---~~l~---~-~~D~~I~v~~~~d~rl~Rri~Rd 650 (862)
.. .......-+|++|..--. ..+. . ..|..|+++++.+..+.|...|-
T Consensus 71 i~----~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 71 LT----QNQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred Hh----cCcccCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence 10 001113568999954322 1222 2 46889999999999888877763
No 218
>PRK14528 adenylate kinase; Provisional
Probab=97.67 E-value=1.7e-05 Score=81.29 Aligned_cols=117 Identities=14% Similarity=0.109 Sum_probs=67.5
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchh-hcCCccccceeeeccccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDLETGA 597 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~-L~~g~~v~~P~yd~~~~~ 597 (862)
.|.|.||+||||||+|+.|++.+|+.++++|+..+..-... .+ +...+.. +.+|..+.-........+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~----~~-------~g~~~~~~~~~g~lvp~~~~~~~~~~ 71 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQ----TA-------MGIEAKRYMDAGDLVPDSVVIGIIKD 71 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcC----CH-------HHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 47789999999999999999999999999999987521110 00 0000111 122322111111111111
Q ss_pred ccCceeeeecccceeEEEcceeccc-------Hhhh---hccceeeeeecccchheeheeeccc
Q 002962 598 RSGFKELEVSEDCGVIIFEGVYALH-------PEIR---KSLDLWIAVVGGVHSHLISRVQRDK 651 (862)
Q Consensus 598 r~~~~~~~~~~~~~vVIvEG~~~~~-------~~l~---~~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (862)
+. .......-+|++|.---. ..+. ...|..|+++++.+..+.|...|..
T Consensus 72 ~l-----~~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~ 130 (186)
T PRK14528 72 RI-----READCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAE 130 (186)
T ss_pred HH-----hCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCcc
Confidence 11 001113468889953211 1111 2478999999999999888887753
No 219
>PLN02674 adenylate kinase
Probab=97.66 E-value=2.6e-05 Score=83.07 Aligned_cols=119 Identities=10% Similarity=-0.037 Sum_probs=69.1
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccccccc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~ 141 (862)
...|.|.|++||||||+|+.|++.+|+..|+++++.+.....+.+-. ..+.+.+ ..|+.+.-............
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g---~~i~~~~---~~G~lvpd~iv~~lv~~~l~ 104 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLG---IKAKEAM---DKGELVSDDLVVGIIDEAMK 104 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhh---HHHHHHH---HcCCccCHHHHHHHHHHHHh
Confidence 45688999999999999999999999999999998764332222110 1111111 12322111111111111111
Q ss_pred cceeeccCceEEEEcccchhh---Hhhh-------hccceEEEEEeceeeeeeeeeecc
Q 002962 142 SKVIKGASSGVVIVDGTYALD---ARLR-------SLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~l~~---~~l~-------~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
. .....-+|++|.=--. ..+. -..|.+|+++++.+..++|...|.
T Consensus 105 ~----~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~ 159 (244)
T PLN02674 105 K----PSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRW 159 (244)
T ss_pred C----cCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccc
Confidence 0 1112347788754322 1111 246899999999999888887774
No 220
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.64 E-value=1.5e-05 Score=80.10 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=32.1
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
.|.|+|++||||||+++.|++.+|..+++.|.+...
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~ 39 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQS 39 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHH
Confidence 367789999999999999999999999999988653
No 221
>PF01928 CYTH: CYTH domain; InterPro: IPR008172 The CYTH domain is an ancient enzymatic domain that was present in the Last Universal Common Ancestor and was involved in nucleotide or organic phosphate metabolism []. It is found in a variety of enzymes, including thiamine-triphosphatase and the CyaB-like adenlyl cyclases []. Structurally, this domain consists mainly of antiparallel beta sheets that form a wide barrel with a channel running through it.; GO: 0006796 phosphate-containing compound metabolic process; PDB: 2DC4_B 3SY3_A 3TJ7_D 3N10_A 3N0Z_A 3N0Y_A 2FJT_A 2GFG_A 2EEN_A 2ACA_B ....
Probab=97.62 E-value=0.00011 Score=74.96 Aligned_cols=127 Identities=21% Similarity=0.278 Sum_probs=95.8
Q ss_pred hhheeeecCCCCCCCccCCCCeEEEEEe-cceeeEEeeccccCCCeeeccccceeee-----------hhhhhhhhhccc
Q 002962 730 FIDMYLRLPGIPTNGQLTESDCIRVRIC-EGRFALLIREPLREGNFIIQPKVDFDIS-----------ISTVAGLLNLGY 797 (862)
Q Consensus 730 y~~~Yl~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~f~~~-----------~~~~~~l~~lg~ 797 (862)
+.+.|+-.|+... ...+.|||+|.. ++++.+.+..|..+++ ++.++|+++ -.+.--|-++|+
T Consensus 35 ~~d~Y~dt~~~~L---~~~~~~lRiR~~~~~~~~lTlK~~~~~~~---~~e~~~~~~r~e~e~~i~~~~~~~~~l~~l~l 108 (185)
T PF01928_consen 35 QTDTYFDTPDRDL---RKAGIALRIRRENGDGWYLTLKGPGSDGP---REEIEFEVSREEYEAPISDAEEMREILEALGL 108 (185)
T ss_dssp EEEEEEEETTTHH---HHTTSEEEEEEETTTEEEEEEEEESSSSS---EEEEEEEESHHCCEEEHSHHHHHHHHHHHTTC
T ss_pred EEEEEEeCCChhH---HhCCcEEEEEeecCCccEEEEEccCccCc---ccccceeecchhhhccccchHHHHHHHHHhcC
Confidence 3455555553221 234679999976 6666699999999998 566666665 123556778889
Q ss_pred eEEEEEEeeeeeeecCeEEEEeeccCCC--CCCceEEeccCHHHHhhccce-------eeecC-cccceehhccC
Q 002962 798 QAVAYIEASAFIYQDGKILIEVDHLQDA--PSPYLQIKGVDKEAVAAAGST-------LKLDG-SYTTKVMSLAL 862 (862)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~ 862 (862)
+.++.+....+.|.-+++.|.+|+.+.+ ....|.+++.+...+.+++.+ ||+.. +-++++|++++
T Consensus 109 ~~~~~~~k~R~~~~~~~~~v~lD~~~~~~~~~~EiE~~~~~~~~~~~~~~~i~~~~~~l~~~~~s~~~r~y~~l~ 183 (185)
T PF01928_consen 109 RPVARIEKKRRSYRLEGVEVELDEVDGLPGTFLEIEIESEDEEDLKEAAEEILALLNELGISENSKIERSYLELL 183 (185)
T ss_dssp EEEEEEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHHHHHHHHTTEEGGGBHHSHHHHHC
T ss_pred ceeEEEEEEEEEEEECCEEEEEEEEecceEEEEEEEEcCCCHhHHHHHHHHHHHHhhhcCCCccchHHHHHHHhh
Confidence 9998888777777778899999999999 444566688888888888877 78876 77999999875
No 222
>PRK14532 adenylate kinase; Provisional
Probab=97.61 E-value=2.7e-05 Score=79.61 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=32.7
Q ss_pred EeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
|.|.|++||||||+|+.|++.+|+.++|+||..+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~ 37 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRA 37 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHH
Confidence 66799999999999999999999999999999875
No 223
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.60 E-value=3.2e-05 Score=92.03 Aligned_cols=41 Identities=17% Similarity=0.124 Sum_probs=35.8
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeeccccccc
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV 100 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~ 100 (862)
.+...|.+.|.+||||||+++.||+.||..++|+|.+....
T Consensus 4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~ 44 (542)
T PRK14021 4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIERE 44 (542)
T ss_pred CCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHH
Confidence 34566999999999999999999999999999999975533
No 224
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.59 E-value=1.8e-05 Score=83.18 Aligned_cols=31 Identities=29% Similarity=0.456 Sum_probs=26.7
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeec
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D 94 (862)
+|+|-|..||||||+++.|++.++..++..+
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~ 31 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEA 31 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeecc
Confidence 5899999999999999999998887666444
No 225
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.59 E-value=7.6e-06 Score=83.97 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=38.6
Q ss_pred ccceeeeeecccchheeheeecccccccccccc------cceehhhhhhhhhcccccccccccccc
Q 002962 628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIR 687 (862)
Q Consensus 628 ~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~------~~~~~~v~p~~~~~I~p~~~~ADivI~ 687 (862)
.-|+.||++++.++-+.|-.+ ||+..+. .+|+..+...|..|+.....+.++.|+
T Consensus 126 ~PdllIyLd~~~e~~l~RI~~-----RgR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~ 186 (216)
T COG1428 126 RPDLLIYLDASLETLLRRIAK-----RGRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGID 186 (216)
T ss_pred CCCEEEEEeCCHHHHHHHHHH-----hCCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeeec
Confidence 568899999999887666544 4555552 247777778888887766556666665
No 226
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.56 E-value=2.7e-05 Score=81.56 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=33.0
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
.|.|.|++||||||+|+.|++.+|+.++|++|..+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~ 37 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRA 37 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHH
Confidence 377899999999999999999999999999998774
No 227
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=97.56 E-value=3.9e-05 Score=77.69 Aligned_cols=151 Identities=19% Similarity=0.125 Sum_probs=72.7
Q ss_pred EEEeecCCCCCCcchHHHHhhhcee--eEEEeecccccccCCC--CCCCcc-------chHH-HHHhhhhhhcCCCcccc
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIG--CTLISMENYRVGVDEG--NDLDSI-------DFDA-LVQNLQDLTEGKDTLIP 130 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg--~~vI~~D~~~~~~~~~--~~~~s~-------d~~~-l~~~L~~l~~~~~i~~p 130 (862)
.||.+.|+|.|||||+|+.|++.+. +..++.|.|...+..+ .....+ +... +...+.....+
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------ 75 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAA------ 75 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHH------
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHH------
Confidence 4799999999999999999999886 4678999996632211 000011 0011 11111111000
Q ss_pred ccccccccccccceeeccCceEEEEcccchhh----Hhhhhcc---c-eEEEEEeceeeeeeeeeecccCCccchhhHHh
Q 002962 131 MFDYQQKNRIGSKVIKGASSGVVIVDGTYALD----ARLRSLL---D-IRVAVVGGVHFSLISKVQYDIGDSCSLDSLID 202 (862)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~----~~l~~~~---D-~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~ 202 (862)
+ ........-||+|..+.-. ..+++.+ + +.|-|.||.++..+|-..|-....+ ..+
T Consensus 76 ---------i---aa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR~~G----~a~ 139 (174)
T PF07931_consen 76 ---------I---AAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDRPIG----LAA 139 (174)
T ss_dssp ---------H---HHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTT----HHH
T ss_pred ---------H---HHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCcchH----HHH
Confidence 0 0001123346666555432 2232222 2 5577888988766666666321111 112
Q ss_pred hhhhhhhcccCCCcccceeecCCccchhhHhhhhhhcc
Q 002962 203 SIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKC 240 (862)
Q Consensus 203 ~~~p~~~k~Iep~~~~ADiII~N~~~~~~~~~~y~lk~ 240 (862)
.+...-.+ -..-|+.|+.+..+..+++.-+++.
T Consensus 140 ~q~~~Vh~-----~~~YDleVDTs~~sp~ecA~~I~~~ 172 (174)
T PF07931_consen 140 WQAEHVHE-----GGRYDLEVDTSATSPEECAREILAR 172 (174)
T ss_dssp HHTTGGGT-----T---SEEEETTSS-HHHHHHHHHTT
T ss_pred HHHhhccc-----CCCCCEEEECCCCCHHHHHHHHHHH
Confidence 22221111 2357899998877777777776654
No 228
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.55 E-value=2.8e-05 Score=79.18 Aligned_cols=116 Identities=20% Similarity=0.210 Sum_probs=66.7
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhh-hcCCCcccccccccccccccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKNRIGS 142 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l-~~~~~i~~p~~~~~~~~~~~~ 142 (862)
.|.|.|+|||||||+|+.|++.++++.||+|+++++......+ +....... ..++-+.-..+......+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~-------lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~ 74 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTE-------LGEEIKKYIDKGELVPDEIVNGLVKERLDE 74 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCCh-------HHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence 4889999999999999999999999999999998854333211 12222221 222211111122222222221
Q ss_pred ceeeccCceEEEEcccchhh---Hhh----h---hccceEEEEEeceeeeeeeeeecc
Q 002962 143 KVIKGASSGVVIVDGTYALD---ARL----R---SLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l~~---~~l----~---~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
. .... .+|++|.=-.. ..+ . ...|.++.++.+.+..+.|...|.
T Consensus 75 ~---d~~~-~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~ 128 (178)
T COG0563 75 A---DCKA-GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRR 128 (178)
T ss_pred h---cccC-eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCcc
Confidence 1 0112 46666653322 111 1 245788888888777777776664
No 229
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.53 E-value=0.00013 Score=79.73 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=25.7
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEE
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI 91 (862)
..+.+|+|+|++||||||+++.|+. +|..++
T Consensus 4 ~~~~~i~i~G~~GsGKtt~~~~l~~-~g~~~~ 34 (288)
T PRK05416 4 APMRLVIVTGLSGAGKSVALRALED-LGYYCV 34 (288)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHH-cCCeEE
Confidence 3456899999999999999999964 576655
No 230
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.52 E-value=9.7e-05 Score=75.78 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=23.4
Q ss_pred EEEeecCCCCCCcchHHHHhhhcee
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIG 87 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg 87 (862)
++|+|.|++||||||+++.|++.++
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6799999999999999999999885
No 231
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.51 E-value=3.9e-05 Score=77.70 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=22.8
Q ss_pred EEEeecCCCCCCcchhHhhhccceee
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIVGC 543 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~ 543 (862)
.+|+|.||+||||||+++.|+..++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 37889999999999999999987653
No 232
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.50 E-value=1.8e-05 Score=81.98 Aligned_cols=36 Identities=28% Similarity=0.291 Sum_probs=30.1
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEE-Eeeccc
Q 002962 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTL-ISMENY 96 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~v-I~~D~~ 96 (862)
.+.+|.|+|.+||||||+|+.|++.+|+.+ +++|-+
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~ 38 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYL 38 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHH
Confidence 357899999999999999999999999765 455544
No 233
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=3.1e-05 Score=83.96 Aligned_cols=42 Identities=31% Similarity=0.366 Sum_probs=37.8
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEeeccc--ccccCC
Q 002962 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDE 102 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~ 102 (862)
+-.+|+|+|++|||||-||--||.+|+..+|+.|.+ |++++-
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldi 49 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDI 49 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCccc
Confidence 457999999999999999999999999999999995 887653
No 234
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.46 E-value=4.6e-05 Score=77.63 Aligned_cols=138 Identities=20% Similarity=0.223 Sum_probs=70.9
Q ss_pred eEEEeecCCCCCCcchHHHHhhhcee---eEEEeecc-cccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMEN-YRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg---~~vI~~D~-~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~ 137 (862)
|++|.++|.+||||||+|+.|++.|. ..+++... |..... ++.....--+...+.... .+. ..++.
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~-~DEslpi~ke~yres~~k-----s~~-rlldS--- 70 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGIL-WDESLPILKEVYRESFLK-----SVE-RLLDS--- 70 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhhee-cccccchHHHHHHHHHHH-----HHH-HHHHH---
Confidence 46789999999999999999999884 44554443 222211 111000000000000000 000 00000
Q ss_pred cccccceeeccCceEEEEcccchhhHhhhhcc---------ceEEEEEeceeeeeeeeeecccCCccchhhHHhhhhhhh
Q 002962 138 NRIGSKVIKGASSGVVIVDGTYALDARLRSLL---------DIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLF 208 (862)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~---------D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~~~~p~~ 208 (862)
.=...+||++...-+...-+++. -.+||+-++.+++++|-..|.. .-+++++++ +|
T Consensus 71 ---------alkn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erge---pip~Evl~q---ly 135 (261)
T COG4088 71 ---------ALKNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGE---PIPEEVLRQ---LY 135 (261)
T ss_pred ---------HhcceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCC---CCCHHHHHH---HH
Confidence 01145788888776653222221 2789999999999887755431 344555554 34
Q ss_pred hcccCCCc----ccceeecC
Q 002962 209 RKHIEPDL----HHAQIRIN 224 (862)
Q Consensus 209 ~k~Iep~~----~~ADiII~ 224 (862)
++|=+|-. ..+-++|+
T Consensus 136 ~RfEePn~~~rWDspll~id 155 (261)
T COG4088 136 DRFEEPNPDRRWDSPLLVID 155 (261)
T ss_pred HhhcCCCCCccccCceEEEe
Confidence 44444443 23345554
No 235
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.46 E-value=4e-05 Score=78.08 Aligned_cols=35 Identities=31% Similarity=0.550 Sum_probs=33.0
Q ss_pred EeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
|.|-|||||||||+|++|++.++...+|+||+++.
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~ 37 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRA 37 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHh
Confidence 66789999999999999999999999999999996
No 236
>PRK14526 adenylate kinase; Provisional
Probab=97.44 E-value=5.7e-05 Score=79.05 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=63.5
Q ss_pred EeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccccccccce
Q 002962 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKV 144 (862)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~~~~ 144 (862)
|+|.|++||||||+|+.|++.+|+..++++++.+.....+.+-. ..+.+.+ ..|.-+.-.........+...
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g---~~i~~~~---~~g~lvpd~~~~~lv~~~l~~-- 74 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLG---KEIKQIV---ENGQLVPDSITIKIVEDKINT-- 74 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhh---HHHHHHH---HcCccCChHHHHHHHHHHHhc--
Confidence 77999999999999999999999999999998664332222110 1111111 112211111111111111111
Q ss_pred eeccCceEEEEcccc-hhh--Hhhhhcc--ceEEEEEeceeeeeeeeeecc
Q 002962 145 IKGASSGVVIVDGTY-ALD--ARLRSLL--DIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 145 ~~~~~~~vVIvEG~~-l~~--~~l~~~~--D~~I~Vda~~~~~l~R~i~RD 190 (862)
.....-+|+||.- -.. ..+...+ +.+++++++.+..+.|...|.
T Consensus 75 --~~~~~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 123 (211)
T PRK14526 75 --IKNNDNFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRR 123 (211)
T ss_pred --ccccCcEEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCC
Confidence 1112347779873 221 2222221 356778899888888877764
No 237
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.43 E-value=6.3e-05 Score=73.26 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=36.0
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeeccccc
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (862)
+-+.+|.|.|++||||||++++|++.||+..++.|+|+.
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp 48 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHP 48 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCC
Confidence 345689999999999999999999999999999999977
No 238
>PRK02496 adk adenylate kinase; Provisional
Probab=97.43 E-value=5.6e-05 Score=77.05 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=32.9
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
.|.|.||+||||||+|+.|++.+++.++++|+..+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~ 38 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQ 38 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHH
Confidence 477899999999999999999999999999998764
No 239
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.43 E-value=9.2e-05 Score=71.85 Aligned_cols=116 Identities=22% Similarity=0.175 Sum_probs=66.9
Q ss_pred cCCCCCCcchHHHHhhhceeeEEEeecccccc----cCCCCCC-CccchHHHHHhhh----hhhcCCCcccccccccccc
Q 002962 68 GGPSGSGKTSLAEKLASVIGCTLISMENYRVG----VDEGNDL-DSIDFDALVQNLQ----DLTEGKDTLIPMFDYQQKN 138 (862)
Q Consensus 68 tG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~----~~~~~~~-~s~d~~~l~~~L~----~l~~~~~i~~p~~~~~~~~ 138 (862)
.|.+||||||++..||+.||+..|+.|+++.. .+..+.| ..-|+.-..+.+. ....++
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~------------- 67 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKN------------- 67 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCC-------------
Confidence 59999999999999999999999999999872 1222333 2222222222222 211111
Q ss_pred ccccceeeccCceEEEEcccch--hhHhhhhcc-c-eEEEEEeceeeeeeeeeecccCCccchhhHHhhhhhhhh
Q 002962 139 RIGSKVIKGASSGVVIVDGTYA--LDARLRSLL-D-IRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFR 209 (862)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l--~~~~l~~~~-D-~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~~~~p~~~ 209 (862)
...||+...+= |...++..+ + .-||++.+.++.+.|...|.... -...+++.|+...+
T Consensus 68 -----------~~~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHF--M~~~ll~SQfa~LE 129 (161)
T COG3265 68 -----------KHVVIACSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHF--MPASLLDSQFATLE 129 (161)
T ss_pred -----------CceEEecHHHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCC--CCHHHHHHHHHHhc
Confidence 11233333322 224444444 3 33688989888888877775332 34455665554443
No 240
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.42 E-value=2.2e-05 Score=77.46 Aligned_cols=112 Identities=20% Similarity=0.094 Sum_probs=61.4
Q ss_pred ecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccccccccceee
Q 002962 67 IGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIK 146 (862)
Q Consensus 67 ItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~~~~~~ 146 (862)
|.||+||||||+|+.|++.+|+..|+++++.+.......+ --..+.+. +..|+.+.-...-.....+....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~---~g~~i~~~---l~~g~~vp~~~v~~ll~~~l~~~--- 71 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSE---LGKQIQEY---LDNGELVPDELVIELLKERLEQP--- 71 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSH---HHHHHHHH---HHTTSS--HHHHHHHHHHHHHSG---
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhH---HHHHHHHH---HHhhccchHHHHHHHHHHHHhhh---
Confidence 6799999999999999999999999999986532221111 01112222 22344332222222222222111
Q ss_pred ccCceEEEEcccchhh---H---h----hhhccceEEEEEeceeeeeeeeee
Q 002962 147 GASSGVVIVDGTYALD---A---R----LRSLLDIRVAVVGGVHFSLISKVQ 188 (862)
Q Consensus 147 ~~~~~vVIvEG~~l~~---~---~----l~~~~D~~I~Vda~~~~~l~R~i~ 188 (862)
....-+|++|.=--. . . .....|.+|+++++.+....|...
T Consensus 72 -~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 72 -PCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp -GTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred -cccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 223457788764322 1 1 234467999999998877666544
No 241
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.42 E-value=4.8e-05 Score=73.69 Aligned_cols=36 Identities=33% Similarity=0.624 Sum_probs=33.0
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
+|.+.|++||||||+|+.|+..++..+++.|++...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~ 36 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRR 36 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHH
Confidence 577899999999999999999999999999998764
No 242
>PLN02459 probable adenylate kinase
Probab=97.41 E-value=0.00013 Score=78.28 Aligned_cols=119 Identities=17% Similarity=0.129 Sum_probs=67.4
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhh-hhcCCCccccccccccccccc
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRIG 141 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~-l~~~~~i~~p~~~~~~~~~~~ 141 (862)
+.|.|.|++||||||+|+.|++.+|+..|+++++.+.....+.+ +...+.. +..|.-+.-.........+..
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~-------lg~~i~~~~~~G~lVPdeiv~~ll~~~l~ 102 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGP-------LGAQLKEIVNQGKLVPDEIIFSLLSKRLE 102 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccch-------hHHHHHHHHHcCCccCHHHHHHHHHHHHh
Confidence 45777899999999999999999999999999987643222111 1111111 112221111111111111110
Q ss_pred cceeeccCceEEEEcccchhh---Hhhhh--ccceEEEEEeceeeeeeeeeecc
Q 002962 142 SKVIKGASSGVVIVDGTYALD---ARLRS--LLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~l~~---~~l~~--~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
.. ......-+|+||.=--. ..+.. ..|.+|+++++.+..+.|...|.
T Consensus 103 ~~--~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~ 154 (261)
T PLN02459 103 AG--EEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRR 154 (261)
T ss_pred cc--cccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccc
Confidence 00 00123458888864322 12222 35899999999999888887774
No 243
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.38 E-value=0.00011 Score=79.76 Aligned_cols=108 Identities=16% Similarity=0.092 Sum_probs=55.6
Q ss_pred eEEEeecCCCCCCcchHHHHhhhcee-----eEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCcccccccccc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~ 136 (862)
|.+|.|+|.+||||||+|+.|++.+. +.+++-|++.-..... .++......+..+......
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y--~~~~~Ek~~R~~l~s~v~r------------ 66 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDY--ADSKKEKEARGSLKSAVER------------ 66 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS----GGGHHHHHHHHHHHHHH------------
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhh--hchhhhHHHHHHHHHHHHH------------
Confidence 57899999999999999999998653 5667755554211111 1222222222222211100
Q ss_pred ccccccceeeccCceEEEEcccchhhHhhh---------hccceEEEEEeceeeeeeeeeecccC
Q 002962 137 KNRIGSKVIKGASSGVVIVDGTYALDARLR---------SLLDIRVAVVGGVHFSLISKVQYDIG 192 (862)
Q Consensus 137 ~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~---------~~~D~~I~Vda~~~~~l~R~i~RD~~ 192 (862)
......+||+|+.+-+...-. ..--..||++++.+.++.|-..|...
T Consensus 67 ---------~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~ 122 (270)
T PF08433_consen 67 ---------ALSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEP 122 (270)
T ss_dssp ---------HHTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S
T ss_pred ---------hhccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCC
Confidence 012246999999986553111 22237799999999999998888644
No 244
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=97.37 E-value=2.9e-05 Score=77.40 Aligned_cols=127 Identities=17% Similarity=0.119 Sum_probs=67.9
Q ss_pred CCCCcchHHHHhhhceeeEEEeecccccccCCCCCCC---ccchHHHHH----hhhhhhcCCCccccccccccccccccc
Q 002962 71 SGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLD---SIDFDALVQ----NLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (862)
Q Consensus 71 sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~---s~d~~~l~~----~L~~l~~~~~i~~p~~~~~~~~~~~~~ 143 (862)
+||||||+++.||+.||++++|+|.+........-.+ ..+.+.+++ .|..+..
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g~si~~i~~~~G~~~fr~~E~~~l~~l~~-------------------- 60 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTGMSISEIFAEEGEEAFRELESEALRELLK-------------------- 60 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhCCcHHHHHHcCChHHHHHHHHHHHHHHhc--------------------
Confidence 6999999999999999999999999865332211111 111111111 1111111
Q ss_pred eeeccCceEEEEcccchhhHhhhh---ccceEEEEEeceeeeeeeeeecccCCc---cch----hhHHhhhhhhhhcccC
Q 002962 144 VIKGASSGVVIVDGTYALDARLRS---LLDIRVAVVGGVHFSLISKVQYDIGDS---CSL----DSLIDSIFPLFRKHIE 213 (862)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~~~l~~---~~D~~I~Vda~~~~~l~R~i~RD~~~~---~~~----e~~~~~~~p~~~k~Ie 213 (862)
....||...|-.+..+...+ ..-.+|||+++.+...+|...++.... ... ........|.|.+
T Consensus 61 ----~~~~VIa~GGG~~~~~~~~~~L~~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~~Y~~--- 133 (158)
T PF01202_consen 61 ----ENNCVIACGGGIVLKEENRELLKENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREPLYEQ--- 133 (158)
T ss_dssp ----SSSEEEEE-TTGGGSHHHHHHHHHHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHHHHHH---
T ss_pred ----cCcEEEeCCCCCcCcHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHHHHh---
Confidence 11234445454444443332 345899999999987777655553111 111 1111233566665
Q ss_pred CCcccceeecCCccc
Q 002962 214 PDLHHAQIRINNRFV 228 (862)
Q Consensus 214 p~~~~ADiII~N~~~ 228 (862)
.||++++.+..
T Consensus 134 ----~a~~~v~~~~~ 144 (158)
T PF01202_consen 134 ----AADIVVDTDGS 144 (158)
T ss_dssp ----HSSEEEETSSC
T ss_pred ----cCeEEEeCCCC
Confidence 68888877743
No 245
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.34 E-value=5.4e-05 Score=77.68 Aligned_cols=56 Identities=11% Similarity=0.067 Sum_probs=34.8
Q ss_pred ccceEEEEEeceeeeeeeeeecccCCc-cchhhHHhhhhhhhhcccCC-Ccccceeec
Q 002962 168 LLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHIEP-DLHHAQIRI 223 (862)
Q Consensus 168 ~~D~~I~Vda~~~~~l~R~i~RD~~~~-~~~e~~~~~~~p~~~k~Iep-~~~~ADiII 223 (862)
..|++||++++++++.+|..+|..... ....+.+..+...|..++.. ....+.+++
T Consensus 124 ~pd~~i~l~~~~~~~~~Ri~~R~r~~e~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~v 181 (193)
T cd01673 124 PPDLVIYLDASPETCLKRIKKRGRPEEQGIPLDYLEDLHEAYEKWFLPQMYEKAPVLI 181 (193)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCcHhhhcCCHHHHHHHHHHHHHHHhhccCCCCCEEE
Confidence 478999999999999888777653211 11234556666677766643 123345543
No 246
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.34 E-value=8.2e-05 Score=74.18 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=31.3
Q ss_pred EeecCCCCCCcchhHhhhccceeeeEEeeccccc
Q 002962 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (862)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~ 553 (862)
|+|.||+||||||+|+.|+..++..+++.|+|+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~ 34 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHP 34 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccC
Confidence 4678999999999999999999999999999974
No 247
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.33 E-value=0.0002 Score=73.13 Aligned_cols=157 Identities=14% Similarity=0.058 Sum_probs=71.5
Q ss_pred EEEeecCCCCCCcchHHHHhhhce----eeEEEeecccccccCCCC-CCCccchHHHHHhhhhhhcCCCccccccccccc
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVI----GCTLISMENYRVGVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L----g~~vI~~D~~~~~~~~~~-~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~ 137 (862)
.+|.|.||+||||+|+++.|.+.. +..+.++-.-.+.-...+ +..-...+.+.+ .+..|.-+.+..+....+
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~---~i~~g~fve~~~~~g~~Y 79 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFED---DIKSGLFLEWGEYSGNYY 79 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHH---HHHcCCeEEEEEEcCcCc
Confidence 579999999999999999998763 334444433322111111 100011122222 222233233322222111
Q ss_pred ccccc-ceeeccCceEEEEcccchhhHhhhh-ccc-eEEEEEeceeeeeeeeee-cccCCccchhhHHhhhhhhhhcccC
Q 002962 138 NRIGS-KVIKGASSGVVIVDGTYALDARLRS-LLD-IRVAVVGGVHFSLISKVQ-YDIGDSCSLDSLIDSIFPLFRKHIE 213 (862)
Q Consensus 138 ~~~~~-~~~~~~~~~vVIvEG~~l~~~~l~~-~~D-~~I~Vda~~~~~l~R~i~-RD~~~~~~~e~~~~~~~p~~~k~Ie 213 (862)
..... .........++|+++..-....+.. ..+ ++|||..+....+++|+. |.........+.+....... . .
T Consensus 80 Gt~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~~-~--~ 156 (184)
T smart00072 80 GTSKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEA-Q--E 156 (184)
T ss_pred ccCHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-h--h
Confidence 11100 0011123567788776444444443 233 788888665554555443 43222122222222211111 1 1
Q ss_pred CCcccceeecCCcc
Q 002962 214 PDLHHAQIRINNRF 227 (862)
Q Consensus 214 p~~~~ADiII~N~~ 227 (862)
....|.+|.|+.
T Consensus 157 --~~~fd~~I~n~~ 168 (184)
T smart00072 157 --YHLFDYVIVNDD 168 (184)
T ss_pred --hccCCEEEECcC
Confidence 255899998873
No 248
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.33 E-value=9.3e-05 Score=72.66 Aligned_cols=36 Identities=25% Similarity=0.453 Sum_probs=32.9
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
+|.++|++||||||+|+.|++.+++.+++.|++...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~ 36 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPP 36 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccH
Confidence 477899999999999999999999999999999863
No 249
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.32 E-value=9.3e-05 Score=82.51 Aligned_cols=124 Identities=13% Similarity=0.156 Sum_probs=69.6
Q ss_pred EeecCCCCCCcchHHHHhhhcee------eEEEeecccccccC-----CCCCCCccchHHHHHhhh--------hhhcCC
Q 002962 65 VGIGGPSGSGKTSLAEKLASVIG------CTLISMENYRVGVD-----EGNDLDSIDFDALVQNLQ--------DLTEGK 125 (862)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg------~~vI~~D~~~~~~~-----~~~~~~s~d~~~l~~~L~--------~l~~~~ 125 (862)
+.++|++||||||+++.|+..|+ +.+++.|+++.... ....++.| ..+++.+. .+..|-
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~--k~~R~~i~~~le~~v~a~~~g~ 79 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQW--KQFRQELLKYLEHFLVAVINGS 79 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHH--HHHHHHHHHHHHHHHHHhcCcc
Confidence 67899999999999999987664 56999999985321 12223333 33333322 222232
Q ss_pred Cccccc-----cc--c--ccc--c-----cc-----cccee--eccCceEEEEcccchhhHhhhhcc------c---eEE
Q 002962 126 DTLIPM-----FD--Y--QQK--N-----RI-----GSKVI--KGASSGVVIVDGTYALDARLRSLL------D---IRV 173 (862)
Q Consensus 126 ~i~~p~-----~~--~--~~~--~-----~~-----~~~~~--~~~~~~vVIvEG~~l~~~~l~~~~------D---~~I 173 (862)
....|. .. . ..+ . .. ..... ....+-++|+++.+.....-..+. . ..|
T Consensus 80 ~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V 159 (340)
T TIGR03575 80 ELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQL 159 (340)
T ss_pred cccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 222210 00 0 000 0 00 00000 012334899999998763221111 1 679
Q ss_pred EEEeceeeeeeeeeecc
Q 002962 174 AVVGGVHFSLISKVQYD 190 (862)
Q Consensus 174 ~Vda~~~~~l~R~i~RD 190 (862)
|+++|.+.++.|...|.
T Consensus 160 ~ld~ple~~l~RN~~R~ 176 (340)
T TIGR03575 160 FLDCPVESCLLRNKQRP 176 (340)
T ss_pred EEeCCHHHHHHHHhcCC
Confidence 99999999999988885
No 250
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.30 E-value=0.00016 Score=73.72 Aligned_cols=34 Identities=32% Similarity=0.487 Sum_probs=25.8
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce----eeEEEeecc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVI----GCTLISMEN 95 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L----g~~vI~~D~ 95 (862)
+.+|.|+||+|||||||++.|.+.+ +.++-++-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeeccc
Confidence 3468889999999999999998754 345555544
No 251
>PRK13808 adenylate kinase; Provisional
Probab=97.29 E-value=0.0001 Score=81.76 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=32.5
Q ss_pred EeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
|.|.||+||||||+|..|++.+|..+||+||..+.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~ 37 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRA 37 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecccHHHHH
Confidence 56799999999999999999999999999999874
No 252
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.28 E-value=0.00057 Score=73.69 Aligned_cols=119 Identities=20% Similarity=0.281 Sum_probs=68.2
Q ss_pred HHHHHHHhcCCeEEEeecCCCCCCcchHHHHhhhce---e--eEEEeecccccccCCCCCCCcc--chHHHHHhhhhhhc
Q 002962 51 SIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSI--DFDALVQNLQDLTE 123 (862)
Q Consensus 51 ~i~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~~~~~~~s~--d~~~l~~~L~~l~~ 123 (862)
.+..+....+...+|||||++|+||||+...|...| | +.||..|.=.+ ... +++ |.-++.+ +..
T Consensus 40 ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp-~TG----GsiLGDRiRM~~----~~~ 110 (323)
T COG1703 40 LLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP-FTG----GSILGDRIRMQR----LAV 110 (323)
T ss_pred HHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCC-CCC----ccccccHhhHHh----hcc
Confidence 334444556777899999999999999999998766 2 67888876311 000 111 1111111 111
Q ss_pred CCCccc-ccccccc----ccc--cccceeeccCceEEEEcccchhh--HhhhhccceEEEEEec
Q 002962 124 GKDTLI-PMFDYQQ----KNR--IGSKVIKGASSGVVIVDGTYALD--ARLRSLLDIRVAVVGG 178 (862)
Q Consensus 124 ~~~i~~-p~~~~~~----~~~--~~~~~~~~~~~~vVIvEG~~l~~--~~l~~~~D~~I~Vda~ 178 (862)
...+.+ |.-+... ... ...........++||+|-..+.+ ..+.+.+|..++|-.|
T Consensus 111 ~~~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~p 174 (323)
T COG1703 111 DPGVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIP 174 (323)
T ss_pred CCCeEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecC
Confidence 111111 1101000 000 01123334567899999888877 4777999999999877
No 253
>PRK13975 thymidylate kinase; Provisional
Probab=97.28 E-value=0.00015 Score=74.37 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=24.3
Q ss_pred EEEeecCCCCCCcchHHHHhhhceee
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGC 88 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~ 88 (862)
.+|+|.|+.||||||+|+.|++.++.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999999984
No 254
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.26 E-value=0.00055 Score=72.82 Aligned_cols=120 Identities=19% Similarity=0.349 Sum_probs=65.0
Q ss_pred HHHHHHHHhcCCeEEEeecCCCCCCcchHHHHhhhce-----eeEEEeecccccccCCCCCC-CccchHHHHHhhhhhhc
Q 002962 50 KSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRVGVDEGNDL-DSIDFDALVQNLQDLTE 123 (862)
Q Consensus 50 ~~i~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~L-----g~~vI~~D~~~~~~~~~~~~-~s~d~~~l~~~L~~l~~ 123 (862)
..+..+.++.++..+|||||++|+|||||...|...+ .+.|+..|.=.+ ...+.-. +...+. .+..
T Consensus 17 ~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp-~tGGAlLGDRiRM~-------~~~~ 88 (266)
T PF03308_consen 17 ELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSP-FTGGALLGDRIRMQ-------ELSR 88 (266)
T ss_dssp HHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGG-CC---SS--GGGCH-------HHHT
T ss_pred HHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCC-CCCCcccccHHHhc-------CcCC
Confidence 4445555556677899999999999999999998755 277888887322 0000000 001111 1111
Q ss_pred CCCcccccc---------ccccccccccceeeccCceEEEEcccchhh--HhhhhccceEEEEEece
Q 002962 124 GKDTLIPMF---------DYQQKNRIGSKVIKGASSGVVIVDGTYALD--ARLRSLLDIRVAVVGGV 179 (862)
Q Consensus 124 ~~~i~~p~~---------~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~--~~l~~~~D~~I~Vda~~ 179 (862)
...+.+... ...+.+ ..........++||+|-..+.+ -.+.+.+|..++|-.|.
T Consensus 89 d~~vfIRS~atRG~lGGls~~t~~--~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg 153 (266)
T PF03308_consen 89 DPGVFIRSMATRGSLGGLSRATRD--AVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPG 153 (266)
T ss_dssp STTEEEEEE---SSHHHHHHHHHH--HHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESS
T ss_pred CCCEEEeecCcCCCCCCccHhHHH--HHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCC
Confidence 111222110 000001 0112233457899999888777 47779999999998873
No 255
>PRK14529 adenylate kinase; Provisional
Probab=97.26 E-value=0.00012 Score=77.07 Aligned_cols=116 Identities=13% Similarity=0.002 Sum_probs=68.0
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccccccccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~~~ 143 (862)
.|.|.|++||||||+|+.|++.+|...+++.++.+.....+.+- -..+.+.+ ..|.-+.-.........+...
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~l---g~~i~~~i---~~G~lvpdei~~~lv~~~l~~- 74 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTEL---GKKAKEYI---DRGDLVPDDITIPMILETLKQ- 74 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChH---HHHHHHHH---hccCcchHHHHHHHHHHHHhc-
Confidence 37889999999999999999999999999988876543322221 01122222 122221111111111111111
Q ss_pred eeeccCceEEEEcccchhh---Hhhh-------hccceEEEEEeceeeeeeeeeecc
Q 002962 144 VIKGASSGVVIVDGTYALD---ARLR-------SLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~---~~l~-------~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
.. ..-+|+||.=--. ..+. -..|.+|+++++.+..+.|...|.
T Consensus 75 ---~~-~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~ 127 (223)
T PRK14529 75 ---DG-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRR 127 (223)
T ss_pred ---cC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCc
Confidence 11 3348888864322 1111 237899999999999888887774
No 256
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.26 E-value=0.00012 Score=76.74 Aligned_cols=40 Identities=38% Similarity=0.581 Sum_probs=35.4
Q ss_pred hcCCeEEEeecCCCCCCcchHHHHhhhceee-EEEeecccc
Q 002962 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIGC-TLISMENYR 97 (862)
Q Consensus 58 ~~~~~~iIgItG~sGSGKSTlA~~La~~Lg~-~vI~~D~~~ 97 (862)
++..|.+|.|.|.||.||||+|..||..||+ .+|++|.+.
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IR 125 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIR 125 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHH
Confidence 3567899999999999999999999999996 578999863
No 257
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.25 E-value=4.7e-05 Score=78.82 Aligned_cols=39 Identities=31% Similarity=0.409 Sum_probs=32.6
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
.+.+|.|+|.+||||||+|+.|+..++..++..-|+.+.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~ 40 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLRE 40 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHH
Confidence 467999999999999999999999999776666665554
No 258
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.24 E-value=0.00011 Score=73.91 Aligned_cols=125 Identities=21% Similarity=0.211 Sum_probs=76.8
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceeeec
Q 002962 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 593 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~ 593 (862)
.+.|.||.|-|++||||-|.|.++++.++.+.+|+.|..+.+.... ++--..++. ..+++|.-+..-+...
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~------gse~g~~I~---~~i~~G~iVP~ei~~~ 75 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASA------GSERGALIK---EIIKNGDLVPVEITLS 75 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccc------cChHHHHHH---HHHHcCCcCcHHHHHH
Confidence 3568899999999999999999999999999999999998642221 111111111 2233444332211111
Q ss_pred ccccccCceeeeecccceeEEEcceec-------ccHhhhhccceeeeeecccchheeheeecccc
Q 002962 594 ETGARSGFKELEVSEDCGVIIFEGVYA-------LHPEIRKSLDLWIAVVGGVHSHLISRVQRDKS 652 (862)
Q Consensus 594 ~~~~r~~~~~~~~~~~~~vVIvEG~~~-------~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~ 652 (862)
...+ .+.......-++++|.-= ++..+....++.+|++++.++++.|.+.|+..
T Consensus 76 LL~~-----am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~ 136 (195)
T KOG3079|consen 76 LLEE-----AMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQS 136 (195)
T ss_pred HHHH-----HHHhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhccc
Confidence 1000 000011112277777642 11233335689999999999999999998754
No 259
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.00013 Score=71.22 Aligned_cols=45 Identities=18% Similarity=0.383 Sum_probs=39.4
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeeccccccccccc
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKD 559 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~ 559 (862)
+-+.+|-|.|++||||||+++.|.+.|++..+..|||+-+.....
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveK 54 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEK 54 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHH
Confidence 446688899999999999999999999999999999998855433
No 260
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.20 E-value=0.00044 Score=84.09 Aligned_cols=43 Identities=30% Similarity=0.383 Sum_probs=36.9
Q ss_pred cCCeEEEeecCCCCCCcchHHHHhhhce-----eeEEEeecccccccC
Q 002962 59 KGGIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRVGVD 101 (862)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~L-----g~~vI~~D~~~~~~~ 101 (862)
..++.+|.++|.+||||||+|+.|++.| ++.+++.|.++..+.
T Consensus 457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~ 504 (632)
T PRK05506 457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLN 504 (632)
T ss_pred CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccC
Confidence 4458999999999999999999999886 367899999987654
No 261
>PLN02842 nucleotide kinase
Probab=97.19 E-value=0.00015 Score=84.27 Aligned_cols=115 Identities=15% Similarity=0.027 Sum_probs=62.8
Q ss_pred ecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccccccccceee
Q 002962 67 IGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIK 146 (862)
Q Consensus 67 ItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~~~~~~ 146 (862)
|.|++||||||+|+.|++.+|..+|+++++.+.....+.+ --..+.+.+ ..|+.+.-..+.....++.... .
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~---iG~~Ire~l---~~G~lvPdeiv~~ll~drl~~~--~ 73 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTD---IGKRAKEFM---NSGRLVPDEIVIAMVTGRLSRE--D 73 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCH---HHHHHHHHH---hCCCCCcHHHHHHHHHHHHhCc--c
Confidence 7899999999999999999999999999976533222211 011122222 1222111111111111111110 0
Q ss_pred ccCceEEEEcccchhh---Hhhh---hccceEEEEEeceeeeeeeeeecc
Q 002962 147 GASSGVVIVDGTYALD---ARLR---SLLDIRVAVVGGVHFSLISKVQYD 190 (862)
Q Consensus 147 ~~~~~vVIvEG~~l~~---~~l~---~~~D~~I~Vda~~~~~l~R~i~RD 190 (862)
.... -+|+||.---. ..+. ...|++|+++++.+..+.|...|.
T Consensus 74 ~~~~-G~ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~ 122 (505)
T PLN02842 74 AKEK-GWLLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRR 122 (505)
T ss_pred ccCC-cEEEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccc
Confidence 0112 26669842211 1222 246899999999998887766664
No 262
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.18 E-value=0.0002 Score=72.49 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.9
Q ss_pred EEeecCCCCCCcchhHhhhcccee
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
+|.|+||+||||||+++.|+..++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 688999999999999999998765
No 263
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.18 E-value=0.0003 Score=82.59 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=33.2
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (862)
.|+|+|++||||||+++.|++.+|+.++++|.+...
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~ 37 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIER 37 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHH
Confidence 489999999999999999999999999999998553
No 264
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.16 E-value=0.00024 Score=71.30 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=27.9
Q ss_pred cCCCCCCcchHHHHhhhceeeEEEeecccc
Q 002962 68 GGPSGSGKTSLAEKLASVIGCTLISMENYR 97 (862)
Q Consensus 68 tG~sGSGKSTlA~~La~~Lg~~vI~~D~~~ 97 (862)
.|++||||||+++.|+..+|...++.|.++
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~ 30 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLH 30 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCC
Confidence 599999999999999999999999999864
No 265
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.16 E-value=0.0003 Score=82.76 Aligned_cols=95 Identities=12% Similarity=0.070 Sum_probs=63.8
Q ss_pred cCCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhh-hhhcCCCccccccccccc
Q 002962 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQ-DLTEGKDTLIPMFDYQQK 137 (862)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~-~l~~~~~i~~p~~~~~~~ 137 (862)
...+.+|.+.|.+||||||+|+.++...|+.+|+.|.+-. ...+..... .|..
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------~~~~~~~a~~~L~~-------------- 419 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------TQNCLTACERALDQ-------------- 419 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------HHHHHHHHHHHHhC--------------
Confidence 4567899999999999999999999888999999998621 111111111 1122
Q ss_pred cccccceeeccCceEEEEcccchhhH---hhhhcc-----c-eEEEEEeceeeeeeeeeeccc
Q 002962 138 NRIGSKVIKGASSGVVIVDGTYALDA---RLRSLL-----D-IRVAVVGGVHFSLISKVQYDI 191 (862)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~l~~~---~l~~~~-----D-~~I~Vda~~~~~l~R~i~RD~ 191 (862)
..-||+|.+++-.. .+..++ . ..+|+++|.+++..|...|..
T Consensus 420 ------------G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 420 ------------GKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred ------------CCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence 23477888887652 222221 1 457889999988777777754
No 266
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.15 E-value=0.00024 Score=73.48 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=23.7
Q ss_pred CcEEEeecCCCCCCcchhHhhhcccee
Q 002962 516 LPVIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
...+|+|.|||||||||+++.|+..++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 446799999999999999999998764
No 267
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.15 E-value=0.00015 Score=72.37 Aligned_cols=104 Identities=19% Similarity=0.289 Sum_probs=67.6
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCC---CcccchhhhcccchhhcCCccccceeeeccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDD---FSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~---p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~~ 595 (862)
.|+|+|.+|.||||+|+.|+ .+|..++++-+|......-. .++. ---.|.+.+...+..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~-~~de~r~s~~vD~d~~~~~le~~~-------------- 65 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYT-EYDELRKSVIVDVDKLRKRLEELL-------------- 65 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCee-ccCCccceEEeeHHHHHHHHHHHh--------------
Confidence 68999999999999999999 79999999988876422111 0111 11245555555444321
Q ss_pred ccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeeccccccccccc
Q 002962 596 GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 659 (862)
Q Consensus 596 ~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~ 659 (862)
...-.|+||.++ .+.+.+|+.|.+.++++.-..|... ||++.+
T Consensus 66 -------------~~~~~Ivd~H~~---hl~~~~dlVvVLR~~p~~L~~RLk~-----RGy~~e 108 (180)
T COG1936 66 -------------REGSGIVDSHLS---HLLPDCDLVVVLRADPEVLYERLKG-----RGYSEE 108 (180)
T ss_pred -------------ccCCeEeechhh---hcCCCCCEEEEEcCCHHHHHHHHHH-----cCCCHH
Confidence 123456777664 2334789999999988765555433 566654
No 268
>PLN02674 adenylate kinase
Probab=97.15 E-value=0.00029 Score=75.13 Aligned_cols=40 Identities=15% Similarity=0.137 Sum_probs=35.8
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
..+..|.|.||+||||||.|+.|++.+|+..||++|..+.
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~ 68 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRA 68 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHH
Confidence 3345677899999999999999999999999999999985
No 269
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=97.15 E-value=0.00048 Score=74.35 Aligned_cols=139 Identities=21% Similarity=0.191 Sum_probs=69.6
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccccccc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~~~~~ 141 (862)
|.+|.|||.|||||||..+.|.. +|...|| . +....+.+.+..+..... ....+--
T Consensus 1 m~~vIiTGlSGaGKs~Al~~lED-~Gy~cvD--N-------------lP~~Ll~~l~~~~~~~~~-~~~~~Ai------- 56 (284)
T PF03668_consen 1 MELVIITGLSGAGKSTALRALED-LGYYCVD--N-------------LPPSLLPQLIELLAQSNS-KIEKVAI------- 56 (284)
T ss_pred CeEEEEeCCCcCCHHHHHHHHHh-cCeeEEc--C-------------CcHHHHHHHHHHHHhcCC-CCceEEE-------
Confidence 46899999999999999999955 6766553 2 222333444333222111 0000000
Q ss_pred cceeeccCceEEEEcccchhhHhhh-hccc-eEEEEEeceeeeeeeeee-cccCCccchhhHHhhhhhhhhcccCCCccc
Q 002962 142 SKVIKGASSGVVIVDGTYALDARLR-SLLD-IRVAVVGGVHFSLISKVQ-YDIGDSCSLDSLIDSIFPLFRKHIEPDLHH 218 (862)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~l~~~~l~-~~~D-~~I~Vda~~~~~l~R~i~-RD~~~~~~~e~~~~~~~p~~~k~Iep~~~~ 218 (862)
.+..+... ..+...-....+. ...+ .++|++|+.++-++|.-+ |....-.......+. +..+++.++|-+..
T Consensus 57 --~iD~R~~~--~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~-I~~Er~~L~~lr~~ 131 (284)
T PF03668_consen 57 --VIDIRSRE--FFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEA-IEKERELLEPLRER 131 (284)
T ss_pred --EEeCCChH--HHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHH-HHHHHHHHHHHHHh
Confidence 00000000 0000000001121 1122 568999999987666633 111110111111222 45566777888999
Q ss_pred ceeecCCccch
Q 002962 219 AQIRINNRFVS 229 (862)
Q Consensus 219 ADiII~N~~~~ 229 (862)
||+||+.+..+
T Consensus 132 Ad~vIDTs~l~ 142 (284)
T PF03668_consen 132 ADLVIDTSNLS 142 (284)
T ss_pred CCEEEECCCCC
Confidence 99999998654
No 270
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.15 E-value=0.00021 Score=78.20 Aligned_cols=39 Identities=33% Similarity=0.515 Sum_probs=35.1
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeE-EEeeccccc
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCT-LISMENYRV 98 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~-vI~~D~~~~ 98 (862)
+.|++|.|+|++||||||+|..||..||.. +|++|.+..
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re 129 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIRE 129 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHH
Confidence 467899999999999999999999999975 899999863
No 271
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.13 E-value=0.00025 Score=77.56 Aligned_cols=39 Identities=33% Similarity=0.589 Sum_probs=34.9
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhccceeee-EEeecccc
Q 002962 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCE-VVSLESYF 552 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~~~-vislDdfy 552 (862)
.+.|++|.|+|++||||||+|..|+..||.. +++.|.+-
T Consensus 89 ~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~r 128 (301)
T PRK04220 89 SKEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIR 128 (301)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHH
Confidence 3579999999999999999999999999865 88988776
No 272
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.10 E-value=0.00027 Score=78.09 Aligned_cols=39 Identities=36% Similarity=0.609 Sum_probs=35.6
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeecc--cccc
Q 002962 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES--YFKS 554 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDd--fy~~ 554 (862)
.+.+|.|+||+||||||+|..|++.+++.+||.|+ +|+.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~ 43 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRG 43 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeec
Confidence 35689999999999999999999999999999999 5775
No 273
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.09 E-value=0.00023 Score=75.50 Aligned_cols=122 Identities=13% Similarity=0.184 Sum_probs=69.1
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchh-hcCCccccceeeec
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDL 593 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~-L~~g~~v~~P~yd~ 593 (862)
..|..|.|.||+||||||+|+.|++.+|+.++|+|+.++.+.... ... .+.+.. +.+|..+.-.....
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~---t~l--------g~~i~~~~~~G~lvpd~iv~~ 72 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAK---TTI--------GKEIQKVVTSGNLVPDNLVIA 72 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcC---ChH--------HHHHHHHHHcCCcCCHHHHHH
Confidence 345668899999999999999999999999999999998532111 000 111111 12232111111000
Q ss_pred ccccccCceeeeecccceeEEEcceecccH---hhh--hccceeeeeecccchheeheeecc
Q 002962 594 ETGARSGFKELEVSEDCGVIIFEGVYALHP---EIR--KSLDLWIAVVGGVHSHLISRVQRD 650 (862)
Q Consensus 594 ~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~---~l~--~~~D~~I~v~~~~d~rl~Rri~Rd 650 (862)
...++.. .. .......+|++|.---.. .+. ...|..++++.+.+..+.|...|.
T Consensus 73 lv~~~l~--~~-~~~~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr 131 (229)
T PTZ00088 73 IVKDEIA--KV-TDDCFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRR 131 (229)
T ss_pred HHHHHHH--hh-ccccCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCc
Confidence 0111110 00 011235688898532111 111 246788999999988888877764
No 274
>PRK14531 adenylate kinase; Provisional
Probab=97.09 E-value=0.0002 Score=73.06 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=34.0
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeeccccccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE 555 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~ 555 (862)
.|.|.||+||||||+|+.|++.+|+..+|++|..+.+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~ 40 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSE 40 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHH
Confidence 5778999999999999999999999999999998753
No 275
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.07 E-value=0.00012 Score=74.55 Aligned_cols=135 Identities=19% Similarity=0.143 Sum_probs=61.0
Q ss_pred EEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCCCCC----CCccchHHH-HHhhhhhhcCCC----cccccccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGND----LDSIDFDAL-VQNLQDLTEGKD----TLIPMFDY 134 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~----~~s~d~~~l-~~~L~~l~~~~~----i~~p~~~~ 134 (862)
||.|+|..|||++|+|+.||+.||+.++|-+-+.......+- .+.++-... ...+..+..+.. ...+..+.
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDREIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDDK 80 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-HHHHHHCT------------SS-HHH--HH---HHS--------------H
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCHHHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHHH
Confidence 699999999999999999999999999998555332222211 122232221 122222211100 01111000
Q ss_pred ccccccccceeeccCceEEEEcccchhhHhhhhcc--ceEEEEEeceeeeeeeeeecccCCccchhhHH
Q 002962 135 QQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLL--DIRVAVVGGVHFSLISKVQYDIGDSCSLDSLI 201 (862)
Q Consensus 135 ~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~--D~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~ 201 (862)
................-+|+.|-.+.. +.... .+.|||.+|.+.|++|.++|.......+...+
T Consensus 81 -~~~~~~~~i~~la~~~~~Vi~GR~a~~--il~~~~~~l~V~i~A~~~~Rv~ri~~~~~~s~~~A~~~i 146 (179)
T PF13189_consen 81 -IFRAQSEIIRELAAKGNCVIVGRCANY--ILRDIPNVLHVFIYAPLEFRVERIMEREGISEEEAEKLI 146 (179)
T ss_dssp -HHHHHHHHHHHHHH---EEEESTTHHH--HTTT-TTEEEEEEEE-HHHHHHHHHHHHT--HHHHHHHH
T ss_pred -HHHHHHHHHHHHhccCCEEEEecCHhh--hhCCCCCeEEEEEECCHHHHHHHHHHHcCCCHHHHHHHH
Confidence 000000001111222345666665532 22222 38899999999999999999765554444443
No 276
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.07 E-value=0.00016 Score=73.99 Aligned_cols=33 Identities=30% Similarity=0.488 Sum_probs=26.9
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeeccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdf 551 (862)
+|+|.||+||||||+++.|+..++..++..|.+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~ 36 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLLVAHRY 36 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEEEcCEE
Confidence 688899999999999999998877655555544
No 277
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.05 E-value=0.00062 Score=70.95 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=23.5
Q ss_pred cCCeEEEeecCCCCCCcchHHHHhhhc
Q 002962 59 KGGIVTVGIGGPSGSGKTSLAEKLASV 85 (862)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~ 85 (862)
++.+.+|.|+||+|||||||++.|.+.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 456788999999999999999999763
No 278
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.0011 Score=67.26 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.2
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhcee
Q 002962 61 GIVTVGIGGPSGSGKTSLAEKLASVIG 87 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg 87 (862)
...+|.|+||||+||||+.+.|-+..+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~ 29 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK 29 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC
Confidence 346899999999999999999987654
No 279
>PHA00729 NTP-binding motif containing protein
Probab=96.99 E-value=0.0005 Score=72.28 Aligned_cols=106 Identities=18% Similarity=0.131 Sum_probs=61.7
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceee--EEEeecccccccCCCCCCCccchHHHHHhhhhhhcCCCccccccccccc
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGC--TLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~--~vI~~D~~~~~~~~~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~ 137 (862)
.+...|.|+|++|+||||+|..|+..++. ..++.| +..+......--++.+.+.+.|.....+.
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~--~~~~d~~~~~~fid~~~Ll~~L~~a~~~~------------ 80 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTK--DDAWQYVQNSYFFELPDALEKIQDAIDND------------ 80 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccch--hhHHhcCCcEEEEEHHHHHHHHHHHHhcC------------
Confidence 45567999999999999999999987752 233344 22222222223456666666665433221
Q ss_pred cccccceeeccCceEEEEcccch-----------------hhHhhhhccceEEEEEeceeeeeeeeeec
Q 002962 138 NRIGSKVIKGASSGVVIVDGTYA-----------------LDARLRSLLDIRVAVVGGVHFSLISKVQY 189 (862)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~l-----------------~~~~l~~~~D~~I~Vda~~~~~l~R~i~R 189 (862)
...+++|+|+..+ +.+.++..+++.++..++++....+...|
T Consensus 81 ----------~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~R 139 (226)
T PHA00729 81 ----------YRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREK 139 (226)
T ss_pred ----------CCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence 0123566666221 22445556788888877766655544443
No 280
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=96.88 E-value=0.00031 Score=73.90 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=26.3
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeec
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislD 549 (862)
+|+|.|..||||||+++.|++.++..++..+
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~ 31 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEA 31 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeecc
Confidence 5889999999999999999998876655443
No 281
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.87 E-value=0.00078 Score=71.70 Aligned_cols=118 Identities=19% Similarity=0.276 Sum_probs=64.3
Q ss_pred HHHHHHHhcCCCcEEEeecCCCCCCcchhHhhhccce-----eeeEEeecccccccccccCccCCCccc--chhhhcccc
Q 002962 505 QAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFKSEQVKDFKYDDFSSL--DLSLLSKNI 577 (862)
Q Consensus 505 ~~i~~~~~~~~~p~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdfy~~~~~~~~n~~~p~t~--D~~lL~~~L 577 (862)
..++.+....++..+|||+||+|+|||||...|...+ .+.|+..|==-.- . -|++ |.-.|.
T Consensus 17 ~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~------t---GGAlLGDRiRM~--- 84 (266)
T PF03308_consen 17 ELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPF------T---GGALLGDRIRMQ--- 84 (266)
T ss_dssp HHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGC------C------SS--GGGCH---
T ss_pred HHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCC------C---CCcccccHHHhc---
Confidence 3455556666788999999999999999999998766 3678877722110 0 0010 111111
Q ss_pred hhhcCCccccceeeecccccccC--------ceeee--ecccceeEEEcceecccH--hhhhccceeeeeeccc
Q 002962 578 SDIRNGRRTKVPIFDLETGARSG--------FKELE--VSEDCGVIIFEGVYALHP--EIRKSLDLWIAVVGGV 639 (862)
Q Consensus 578 ~~L~~g~~v~~P~yd~~~~~r~~--------~~~~~--~~~~~~vVIvEG~~~~~~--~l~~~~D~~I~v~~~~ 639 (862)
.+.... -.|-.+...|.. ..... .....|+||+|-.-++.. ++.+..|..+++..|.
T Consensus 85 -~~~~d~----~vfIRS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg 153 (266)
T PF03308_consen 85 -ELSRDP----GVFIRSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPG 153 (266)
T ss_dssp -HHHTST----TEEEEEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESS
T ss_pred -CcCCCC----CEEEeecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCC
Confidence 110101 112222211110 00011 123579999999999974 5789999999997764
No 282
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.86 E-value=0.00037 Score=70.58 Aligned_cols=37 Identities=22% Similarity=0.455 Sum_probs=30.7
Q ss_pred EEEeecCCCCCCcchhHhhhccceeee--EEeecccccc
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIVGCE--VVSLESYFKS 554 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~--vislDdfy~~ 554 (862)
.+|.++|++||||||+|+.|++.++.. .++.|+|+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~ 41 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA 41 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh
Confidence 378899999999999999999987643 4578888764
No 283
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.84 E-value=0.00053 Score=70.66 Aligned_cols=59 Identities=7% Similarity=-0.041 Sum_probs=38.4
Q ss_pred ccceEEEEEeceeeeeeeeeecccCCc--cch--hhHHhhhhhhhhcccCCCcccceeecCCc
Q 002962 168 LLDIRVAVVGGVHFSLISKVQYDIGDS--CSL--DSLIDSIFPLFRKHIEPDLHHAQIRINNR 226 (862)
Q Consensus 168 ~~D~~I~Vda~~~~~l~R~i~RD~~~~--~~~--e~~~~~~~p~~~k~Iep~~~~ADiII~N~ 226 (862)
.-|+.||++|+.++-+.|..+|..... ... .++++.....|..+++-.-..-++.|+.+
T Consensus 126 ~PdllIyLd~~~e~~l~RI~~RgR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~ 188 (216)
T COG1428 126 RPDLLIYLDASLETLLRRIAKRGRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGIDGD 188 (216)
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeeeccc
Confidence 568999999999998777777764333 111 35666666666666655544556666543
No 284
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.84 E-value=0.00097 Score=74.37 Aligned_cols=39 Identities=21% Similarity=0.436 Sum_probs=33.2
Q ss_pred cCCCcEEEeecCCCCCCcchhHhhhccce-----eeeEEeeccc
Q 002962 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESY 551 (862)
Q Consensus 513 ~~~~p~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdf 551 (862)
..+.+++|||+|++|||||||+..|...+ .+.+++.|.-
T Consensus 52 ~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~ 95 (332)
T PRK09435 52 HTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPS 95 (332)
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCC
Confidence 45789999999999999999999987765 3778888864
No 285
>COG0645 Predicted kinase [General function prediction only]
Probab=96.82 E-value=0.0011 Score=66.12 Aligned_cols=111 Identities=21% Similarity=0.165 Sum_probs=68.5
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCC-----CCCCCccchHHHHHhhhhhhcCCCccccccccccc
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE-----GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~-----~~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~~~~ 137 (862)
.++.+.|.+||||||+|+.|++.+|+..|.+|...+.+-. ++..+.+..+.-... |+....
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~v--------------y~~l~~ 67 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAV--------------YDELLG 67 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHH--------------HHHHHH
Confidence 4678899999999999999999999999999998775543 222232322211110 000000
Q ss_pred cccccceeeccCceEEEEcccchhh---Hhhhhccc------eEEEEEeceeeeeeeeeeccc
Q 002962 138 NRIGSKVIKGASSGVVIVDGTYALD---ARLRSLLD------IRVAVVGGVHFSLISKVQYDI 191 (862)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~~D------~~I~Vda~~~~~l~R~i~RD~ 191 (862)
+ .........-||+++.+.-. .....+++ +.|.++++.+....|...|..
T Consensus 68 -~---A~l~l~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 68 -R---AELLLSSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred -H---HHHHHhCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence 0 01111234468899988865 22333333 337778888888788877764
No 286
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.80 E-value=0.00061 Score=74.88 Aligned_cols=37 Identities=24% Similarity=0.212 Sum_probs=33.1
Q ss_pred cEEEeecCCCCCCcchhHhhhccce-eeeEEeeccccc
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFK 553 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l-~~~vislDdfy~ 553 (862)
+.+|.+.|++||||||+|+.|++.+ +..+++.|++..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~ 39 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQ 39 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHH
Confidence 4578889999999999999999999 899999999754
No 287
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.80 E-value=0.0012 Score=71.28 Aligned_cols=120 Identities=20% Similarity=0.280 Sum_probs=71.4
Q ss_pred hHHHHHHHHhcCCCcEEEeecCCCCCCcchhHhhhccce-----eeeEEeecccccccccccCccCCCccc--chhhhcc
Q 002962 503 SVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFKSEQVKDFKYDDFSSL--DLSLLSK 575 (862)
Q Consensus 503 ~~~~i~~~~~~~~~p~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdfy~~~~~~~~n~~~p~t~--D~~lL~~ 575 (862)
..+.+.++....+++.+|||+|++|+|||||..+|...| .+.||+.|==-.- .-|++ |.-.|.
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~---------TGGsiLGDRiRM~- 106 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF---------TGGSILGDRIRMQ- 106 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCC---------CCccccccHhhHH-
Confidence 345666677788899999999999999999999998776 3778888722110 00110 000000
Q ss_pred cchhhcCCccccceeeeccccccc---Cc-----eeee--ecccceeEEEcceeccc--Hhhhhccceeeeeeccc
Q 002962 576 NISDIRNGRRTKVPIFDLETGARS---GF-----KELE--VSEDCGVIIFEGVYALH--PEIRKSLDLWIAVVGGV 639 (862)
Q Consensus 576 ~L~~L~~g~~v~~P~yd~~~~~r~---~~-----~~~~--~~~~~~vVIvEG~~~~~--~~l~~~~D~~I~v~~~~ 639 (862)
.+.. .--.|-.+...|- +- ..+. .....|+||+|-.-++. -.+.+..|..+++..|.
T Consensus 107 ---~~~~----~~~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg 175 (323)
T COG1703 107 ---RLAV----DPGVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPG 175 (323)
T ss_pred ---hhcc----CCCeEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCC
Confidence 0000 0111222211110 00 0011 12457999999999987 45789999999997654
No 288
>PLN02459 probable adenylate kinase
Probab=96.79 E-value=0.0007 Score=72.77 Aligned_cols=121 Identities=15% Similarity=0.113 Sum_probs=67.4
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccc-hhhcCCccccceeeecc
Q 002962 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNI-SDIRNGRRTKVPIFDLE 594 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L-~~L~~g~~v~~P~yd~~ 594 (862)
++..|.|.||+||||||+|+.|++.+|...||+.+..+.+-... .+ +.+.+ .-+.+|.-+.--.....
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~----t~-------lg~~i~~~~~~G~lVPdeiv~~l 96 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSS----GP-------LGAQLKEIVNQGKLVPDEIIFSL 96 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhcc----ch-------hHHHHHHHHHcCCccCHHHHHHH
Confidence 44557778999999999999999999999999999987531110 00 00111 11222322211110000
Q ss_pred cccccCceeeeecccceeEEEcceecccH---hhhh--ccceeeeeecccchheeheeecc
Q 002962 595 TGARSGFKELEVSEDCGVIIFEGVYALHP---EIRK--SLDLWIAVVGGVHSHLISRVQRD 650 (862)
Q Consensus 595 ~~~r~~~~~~~~~~~~~vVIvEG~~~~~~---~l~~--~~D~~I~v~~~~d~rl~Rri~Rd 650 (862)
..++.. .. ......-+|++|.==-.. .+.. .+|..|+++++.+..+.|...|.
T Consensus 97 l~~~l~--~~-~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~ 154 (261)
T PLN02459 97 LSKRLE--AG-EEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRR 154 (261)
T ss_pred HHHHHh--cc-cccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccc
Confidence 001110 00 001235677777653321 1212 36889999999988888877764
No 289
>PLN02840 tRNA dimethylallyltransferase
Probab=96.79 E-value=0.00066 Score=77.48 Aligned_cols=37 Identities=32% Similarity=0.546 Sum_probs=34.0
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeeccc
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdf 551 (862)
....+|.|+||+||||||+|..|++.++..+|+.|.+
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~ 55 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSV 55 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEecccc
Confidence 4566899999999999999999999999999999985
No 290
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.76 E-value=0.00076 Score=68.59 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=32.2
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeeccccc
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (862)
-+++|+|++||||||+++.|+..++...++.|+++.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~ 39 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHP 39 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCC
Confidence 368999999999999999999999988899998744
No 291
>PRK13947 shikimate kinase; Provisional
Probab=96.76 E-value=0.00059 Score=68.43 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=31.4
Q ss_pred EeecCCCCCCcchhHhhhccceeeeEEeeccccc
Q 002962 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (862)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~ 553 (862)
|.|.|++||||||+|+.|++.||..+++.|.+..
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~ 37 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIE 37 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhh
Confidence 7789999999999999999999999999998754
No 292
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.74 E-value=0.0005 Score=66.85 Aligned_cols=42 Identities=19% Similarity=0.349 Sum_probs=35.2
Q ss_pred CCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCC
Q 002962 524 GPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDF 565 (862)
Q Consensus 524 G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p 565 (862)
|.+||||||++..|++.||+..|.-|+|+-+.+..++.-+.|
T Consensus 2 GVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiP 43 (161)
T COG3265 2 GVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIP 43 (161)
T ss_pred CCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCC
Confidence 899999999999999999999999999998765544443333
No 293
>PLN02165 adenylate isopentenyltransferase
Probab=96.73 E-value=0.0007 Score=75.04 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=33.6
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeeccc
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdf 551 (862)
....+|+|.||+||||||||..|+..++..++++|..
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 3445899999999999999999999999999999987
No 294
>PRK13948 shikimate kinase; Provisional
Probab=96.69 E-value=0.0008 Score=68.83 Aligned_cols=39 Identities=15% Similarity=0.344 Sum_probs=34.8
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeeccccc
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~ 553 (862)
..+..|.+.|.+||||||+++.|++.+|..++++|.+..
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie 46 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIE 46 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHH
Confidence 456778899999999999999999999999999997654
No 295
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.66 E-value=0.0012 Score=67.57 Aligned_cols=121 Identities=19% Similarity=0.232 Sum_probs=61.1
Q ss_pred EEEeecCCCCCCcchhHhhhccce----eeeEEeecccccccccccCccCCCcccchhhhc-ccc-hhhcCCccccceee
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIV----GCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLS-KNI-SDIRNGRRTKVPIF 591 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l----~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~-~~L-~~L~~g~~v~~P~y 591 (862)
.+|.|.|||||||+|+++.|.+.. ...+.++-..-++.+. .+ .|+..+. +.+ ..+..|.-+..-.|
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~-------~g-~dy~fvs~~ef~~~i~~g~fve~~~~ 74 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEV-------NG-VDYHFVSREEFEDDIKSGLFLEWGEY 74 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCc-------CC-ceEEECCHHHHHHHHHcCCeEEEEEE
Confidence 467789999999999999998764 2222222222111110 00 1111111 122 23344544554444
Q ss_pred eccc-ccccCceee-eecccceeEEEcceecccHhhhhc-cc-eeeeeecccchheeheee
Q 002962 592 DLET-GARSGFKEL-EVSEDCGVIIFEGVYALHPEIRKS-LD-LWIAVVGGVHSHLISRVQ 648 (862)
Q Consensus 592 d~~~-~~r~~~~~~-~~~~~~~vVIvEG~~~~~~~l~~~-~D-~~I~v~~~~d~rl~Rri~ 648 (862)
.-.. |... ..+ ......+++|+++-.-+...+... .+ ..||+.++....+.+|+.
T Consensus 75 ~g~~YGt~~--~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~ 133 (184)
T smart00072 75 SGNYYGTSK--ETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLR 133 (184)
T ss_pred cCcCcccCH--HHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHH
Confidence 3321 1111 001 112235788888876555555443 33 788888777666666655
No 296
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=96.63 E-value=0.0007 Score=83.93 Aligned_cols=37 Identities=32% Similarity=0.751 Sum_probs=36.0
Q ss_pred EEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
++|+|+||+||||||+|+.|++.|+..+++++.+|+.
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa 71 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRA 71 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHH
Confidence 6999999999999999999999999999999999997
No 297
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.61 E-value=0.001 Score=68.82 Aligned_cols=38 Identities=29% Similarity=0.559 Sum_probs=33.0
Q ss_pred cEEEeecCCCCCCcchhHhhhccce-----eeeEEeecccccc
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFKS 554 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdfy~~ 554 (862)
|.+|.+.||+|+||||.+.+|+..+ .+.++++|.|--.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~g 43 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIG 43 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCcc
Confidence 7899999999999999999999876 3789999888654
No 298
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.60 E-value=0.0017 Score=65.72 Aligned_cols=125 Identities=14% Similarity=0.135 Sum_probs=61.9
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccccccc-----cCccCCCcccchhhhcccchhhcCCcccccee
Q 002962 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK-----DFKYDDFSSLDLSLLSKNISDIRNGRRTKVPI 590 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~-----~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~ 590 (862)
...++.|+||||+||||++++|-+..+ ..+|.-.-=++...+ +|.|-.. + +..+.+..++-+++..
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~SVS~TTR~pR~gEv~G~dY~Fvs~-----~---EF~~~i~~~~fLE~a~ 73 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK-LRFSVSATTRKPRPGEVDGVDYFFVTE-----E---EFEELIERDEFLEWAE 73 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC-eEEEEEeccCCCCCCCcCCceeEeCCH-----H---HHHHHHhcCCcEEEEE
Confidence 356788999999999999999988653 222222111111111 2222111 1 1112233344344444
Q ss_pred eecccccccCcee--ee-ecccceeEEEcceecccHhhhhcc-c-eeeeeecccchheeheeecccc
Q 002962 591 FDLETGARSGFKE--LE-VSEDCGVIIFEGVYALHPEIRKSL-D-LWIAVVGGVHSHLISRVQRDKS 652 (862)
Q Consensus 591 yd~~~~~r~~~~~--~~-~~~~~~vVIvEG~~~~~~~l~~~~-D-~~I~v~~~~d~rl~Rri~Rd~~ 652 (862)
|.- +..+... .. ......-||+|-=.-+...++..+ | ..||+.+|.-..|.+|+.+...
T Consensus 74 ~~g---nyYGT~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgt 137 (191)
T COG0194 74 YHG---NYYGTSREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRGT 137 (191)
T ss_pred EcC---CcccCcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCC
Confidence 332 1111100 00 011223444443333333445444 3 5789999999999988876543
No 299
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.59 E-value=0.0011 Score=67.38 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=32.3
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
+++|.|++||||||+++.|+..++...++.|+++..
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~ 40 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPA 40 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCH
Confidence 688999999999999999999998888888888654
No 300
>PRK13946 shikimate kinase; Provisional
Probab=96.58 E-value=0.00095 Score=68.25 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=32.8
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeecccc
Q 002962 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 552 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy 552 (862)
.+..|.+.|++||||||+++.|++.||..+++.|...
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~ 45 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEI 45 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHH
Confidence 3457889999999999999999999999999999743
No 301
>PLN02748 tRNA dimethylallyltransferase
Probab=96.55 E-value=0.0013 Score=76.35 Aligned_cols=40 Identities=33% Similarity=0.567 Sum_probs=36.0
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEeecc--cccc
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES--YFKS 554 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDd--fy~~ 554 (862)
+.+.+|.|.||+|||||+||..|+..+++.+|+.|. +|+.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrg 61 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSG 61 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCC
Confidence 456689999999999999999999999999999996 6875
No 302
>PHA00729 NTP-binding motif containing protein
Probab=96.54 E-value=0.0017 Score=68.30 Aligned_cols=27 Identities=44% Similarity=0.251 Sum_probs=24.0
Q ss_pred CcEEEeecCCCCCCcchhHhhhcccee
Q 002962 516 LPVIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
...-|.|+|++|+||||+|..|+..++
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999998775
No 303
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.53 E-value=0.0021 Score=71.77 Aligned_cols=41 Identities=22% Similarity=0.464 Sum_probs=33.4
Q ss_pred HHhcCCeEEEeecCCCCCCcchHHHHhhhce-----eeEEEeeccc
Q 002962 56 REKKGGIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENY 96 (862)
Q Consensus 56 ~~~~~~~~iIgItG~sGSGKSTlA~~La~~L-----g~~vI~~D~~ 96 (862)
....+++.+|||+|++||||||++..|...+ .+.||+.|.-
T Consensus 50 ~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~ 95 (332)
T PRK09435 50 LPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPS 95 (332)
T ss_pred hhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCC
Confidence 3345678999999999999999999887655 2778888873
No 304
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=96.52 E-value=0.00089 Score=67.90 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=31.4
Q ss_pred EEEeecCCCCCCcchhHhhhcccee--eeEEeecccccc
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIVG--CEVVSLESYFKS 554 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~--~~vislDdfy~~ 554 (862)
.||.+.|+|.|||||+|+.|++.+. ...+++|.|...
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~ 40 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM 40 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh
Confidence 4789999999999999999999985 568899999873
No 305
>PRK14529 adenylate kinase; Provisional
Probab=96.52 E-value=0.0011 Score=69.84 Aligned_cols=115 Identities=16% Similarity=0.053 Sum_probs=65.3
Q ss_pred EeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccc-hhhcCCccccceeeecccccc
Q 002962 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNI-SDIRNGRRTKVPIFDLETGAR 598 (862)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L-~~L~~g~~v~~P~yd~~~~~r 598 (862)
|.|.||+||||||.|+.|++.++...+|+.+..+.+-.. +.+ +.+.+ .-+.+|.-+..-.......++
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~----~t~-------lg~~i~~~i~~G~lvpdei~~~lv~~~ 71 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGG----GTE-------LGKKAKEYIDRGDLVPDDITIPMILET 71 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccC----CCh-------HHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 667999999999999999999999999998888742110 000 01111 112233322111111111111
Q ss_pred cCceeeeecccceeEEEcceecccH---hhh-------hccceeeeeecccchheeheeeccc
Q 002962 599 SGFKELEVSEDCGVIIFEGVYALHP---EIR-------KSLDLWIAVVGGVHSHLISRVQRDK 651 (862)
Q Consensus 599 ~~~~~~~~~~~~~vVIvEG~~~~~~---~l~-------~~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (862)
.. ... ..-+|++|.=--.. .+. -..|..|+++++.+..+.|...|..
T Consensus 72 l~-----~~~-~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~ 128 (223)
T PRK14529 72 LK-----QDG-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRL 128 (223)
T ss_pred Hh-----ccC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCcc
Confidence 10 011 34577777653221 111 2368899999999988888777643
No 306
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=96.52 E-value=0.0034 Score=61.05 Aligned_cols=44 Identities=32% Similarity=0.467 Sum_probs=35.9
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhce---e--eEEEeecccccccCCC
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEG 103 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~~~ 103 (862)
.+-.+|=|||-|||||||+|-+|.+.| | +.+++.|.+..++...
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~D 77 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKD 77 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccc
Confidence 344789999999999999999998766 2 6789999998876543
No 307
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.51 E-value=0.0021 Score=66.43 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=32.4
Q ss_pred cCCCcEEEeecCCCCCCcchhHhhhccce-----eeeEEeecccc
Q 002962 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYF 552 (862)
Q Consensus 513 ~~~~p~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdfy 552 (862)
...+|.+|+|+|++||||||+++.|+..+ ++.+++.|++.
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 34678999999999999999999999876 24566666664
No 308
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.50 E-value=0.0019 Score=66.84 Aligned_cols=42 Identities=29% Similarity=0.425 Sum_probs=32.7
Q ss_pred cCCeEEEeecCCCCCCcchHHHHhhhce---eeEEEeeccccccc
Q 002962 59 KGGIVTVGIGGPSGSGKTSLAEKLASVI---GCTLISMENYRVGV 100 (862)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~L---g~~vI~~D~~~~~~ 100 (862)
...|.+|.++|++||||||++..+...+ ++.+|+.|.|...+
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 4678999999999999999999998876 58899999986644
No 309
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.50 E-value=0.0013 Score=66.49 Aligned_cols=36 Identities=19% Similarity=0.355 Sum_probs=31.9
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeecccc
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 552 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy 552 (862)
+..|.|.|++||||||+++.|+..++..+++.|...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i 39 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEI 39 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchH
Confidence 345888999999999999999999999999999754
No 310
>COG4639 Predicted kinase [General function prediction only]
Probab=96.49 E-value=0.0019 Score=63.45 Aligned_cols=101 Identities=17% Similarity=0.217 Sum_probs=61.4
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecccccccCC-CCCC--Cc---cchHHHHHhhhhhhcCCCccccccccc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE-GNDL--DS---IDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~-~~~~--~s---~d~~~l~~~L~~l~~~~~i~~p~~~~~ 135 (862)
..+|++.|.+||||||+|+.. ...+.+++.|++...+.. .+.. .. .-++.+.+.+...
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qr-------------- 65 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQR-------------- 65 (168)
T ss_pred ceEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHH--------------
Confidence 357999999999999999985 347899999999764421 1110 00 0112222222221
Q ss_pred cccccccceeeccCceEEEEcccchhhH---------hhhhccceEEEEEeceeeeeeeeeec
Q 002962 136 QKNRIGSKVIKGASSGVVIVDGTYALDA---------RLRSLLDIRVAVVGGVHFSLISKVQY 189 (862)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~~---------~l~~~~D~~I~Vda~~~~~l~R~i~R 189 (862)
....+.-|++...+-.. ....+.+..|++|.|...+..|-..|
T Consensus 66 -----------l~~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~ 117 (168)
T COG4639 66 -----------LRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR 117 (168)
T ss_pred -----------HHcCCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc
Confidence 12234567777775442 22244557789999999988885443
No 311
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.48 E-value=0.0016 Score=67.33 Aligned_cols=41 Identities=27% Similarity=0.519 Sum_probs=31.3
Q ss_pred cCCCcEEEeecCCCCCCcchhHhhhccce---eeeEEeeccccc
Q 002962 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV---GCEVVSLESYFK 553 (862)
Q Consensus 513 ~~~~p~iIgI~G~sGSGKTTla~~L~~~l---~~~vislDdfy~ 553 (862)
....|.+|.++|++||||||++..+...+ ++.+|+.|+|-.
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 34689999999999999999999999876 577899998854
No 312
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.45 E-value=0.0013 Score=71.99 Aligned_cols=36 Identities=33% Similarity=0.623 Sum_probs=32.9
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecc--cccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLES--YFKS 554 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDd--fy~~ 554 (862)
+|.|+||+|||||+||..|++.++..+||+|+ +|+.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~ 38 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKG 38 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeee
Confidence 47899999999999999999999999999998 5765
No 313
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.43 E-value=0.0017 Score=61.53 Aligned_cols=32 Identities=38% Similarity=0.699 Sum_probs=27.8
Q ss_pred EeecCCCCCCcchHHHHhhhceeeEEEeeccc
Q 002962 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (862)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~ 96 (862)
|.|.|++|+||||+++.+++.++..++..|..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~ 32 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGS 32 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETT
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccc
Confidence 57899999999999999999999877666653
No 314
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.43 E-value=0.0015 Score=65.04 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=30.9
Q ss_pred CcEEEeecCCCCCCcchhHhhhcccee-----eeEEeeccccc
Q 002962 516 LPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK 553 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy~ 553 (862)
++.+|-|+|.+||||||+|+.|...|. +.+++.|.+-.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 478999999999999999999998873 66777776653
No 315
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.41 E-value=0.0019 Score=65.17 Aligned_cols=37 Identities=32% Similarity=0.370 Sum_probs=30.7
Q ss_pred CcEEEeecCCCCCCcchhHhhhcccee-----eeEEeecccc
Q 002962 516 LPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYF 552 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy 552 (862)
...+|+|.|++||||||+|+.|+..+. +.+++.|.+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 456899999999999999999998873 5667788664
No 316
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.38 E-value=0.0024 Score=66.07 Aligned_cols=40 Identities=35% Similarity=0.492 Sum_probs=31.2
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeeccc--ccccC
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVD 101 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~ 101 (862)
|.++.|.||+|+|||.+|-.||+.+|++||+.|.+ |.++.
T Consensus 1 M~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~ 42 (233)
T PF01745_consen 1 MKVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELS 42 (233)
T ss_dssp -EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGT
T ss_pred CcEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccc
Confidence 56899999999999999999999999999999997 76554
No 317
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.38 E-value=0.0017 Score=61.49 Aligned_cols=34 Identities=29% Similarity=0.558 Sum_probs=28.0
Q ss_pred EeecCCCCCCcchhHhhhccceeeeEEeeccccc
Q 002962 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (862)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~ 553 (862)
|.|.||+|+||||+++.+++.++..++.+|....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~ 34 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSEL 34 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHH
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccc
Confidence 4679999999999999999999877766664433
No 318
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=96.31 E-value=0.00031 Score=71.59 Aligned_cols=132 Identities=17% Similarity=0.152 Sum_probs=56.7
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhh-cccchhhcCCcc----ccceeeec
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLL-SKNISDIRNGRR----TKVPIFDL 593 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL-~~~L~~L~~g~~----v~~P~yd~ 593 (862)
||.|++..|||++++|+.|++.||..+++-+-+...........+....+|-... ...+..+..+.. ...+..+.
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDREIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDDK 80 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-HHHHHHCT------------SS-HHH--HH---HHS--------------H
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCHHHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHHH
Confidence 6899999999999999999999998886653332221111111111122222111 111122111100 01111111
Q ss_pred ccccccCceeeeecccceeEEEcceecccHhhhhc-cceeeeeecccchheeheeeccccc
Q 002962 594 ETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKS-LDLWIAVVGGVHSHLISRVQRDKSR 653 (862)
Q Consensus 594 ~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~-~D~~I~v~~~~d~rl~Rri~Rd~~~ 653 (862)
...... +.+......+-+|+.|+++.+ -+++. --+.||+.+|.+.|+.|.+.|....
T Consensus 81 ~~~~~~--~~i~~la~~~~~Vi~GR~a~~-il~~~~~~l~V~i~A~~~~Rv~ri~~~~~~s 138 (179)
T PF13189_consen 81 IFRAQS--EIIRELAAKGNCVIVGRCANY-ILRDIPNVLHVFIYAPLEFRVERIMEREGIS 138 (179)
T ss_dssp HHHHHH--HHHHHHHH---EEEESTTHHH-HTTT-TTEEEEEEEE-HHHHHHHHHHHHT--
T ss_pred HHHHHH--HHHHHHhccCCEEEEecCHhh-hhCCCCCeEEEEEECCHHHHHHHHHHHcCCC
Confidence 000000 001111223467778998865 11221 2389999999999999988886433
No 319
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.30 E-value=0.0034 Score=63.03 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=32.2
Q ss_pred cCCCcEEEeecCCCCCCcchhHhhhccce---e--eeEEeecccc
Q 002962 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYF 552 (862)
Q Consensus 513 ~~~~p~iIgI~G~sGSGKTTla~~L~~~l---~--~~vislDdfy 552 (862)
+..++.+|=++|.|||||||+|.+|.+.| | +.+++-|+.-
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR 63 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh
Confidence 34578999999999999999999999887 3 5566666553
No 320
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.22 E-value=0.0024 Score=66.09 Aligned_cols=37 Identities=38% Similarity=0.641 Sum_probs=32.0
Q ss_pred eEEEeecCCCCCCcchHHHHhhhcee-----eEEEeeccccc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRV 98 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~ 98 (862)
|.+|++.||+|+||||.+.+||..+. +.++++|.|+-
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 57899999999999999999997663 78899998754
No 321
>PLN02842 nucleotide kinase
Probab=96.21 E-value=0.0012 Score=77.00 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=30.8
Q ss_pred ecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 522 IGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 522 I~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
|.|++||||||+|+.|++.++..++++++..+.
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ 34 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRA 34 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHH
Confidence 689999999999999999999999999998875
No 322
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.20 E-value=0.0015 Score=66.66 Aligned_cols=122 Identities=20% Similarity=0.195 Sum_probs=58.7
Q ss_pred EEEeecCCCCCCcchhHhhhcccee----eeEEeeccccccccc--ccCccCCCcccchhhhcccchhhcCCccccceee
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIVG----CEVVSLESYFKSEQV--KDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIF 591 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~----~~vislDdfy~~~~~--~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~y 591 (862)
.+|.|.||+||||||+++.|.+.++ ..+-++-.--++.+. .++.|-.... .-..+..|+-+..-.|
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~--------f~~~~~~~~fie~~~~ 74 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEE--------FERMIKAGEFIEYGEY 74 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHH--------HHHHHHTTHEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeech--------hhhhhccccEEEEeee
Confidence 4566799999999999999987653 233332222111111 1111211111 1122344555555555
Q ss_pred eccc-ccccCceee-eecccceeEEEcceecccHhhhhc--cceeeeeecccchheeheeec
Q 002962 592 DLET-GARSGFKEL-EVSEDCGVIIFEGVYALHPEIRKS--LDLWIAVVGGVHSHLISRVQR 649 (862)
Q Consensus 592 d~~~-~~r~~~~~~-~~~~~~~vVIvEG~~~~~~~l~~~--~D~~I~v~~~~d~rl~Rri~R 649 (862)
+-.. |... ..+ .......++|++.-..+-..++.. .-..||+.++....+.+++.+
T Consensus 75 ~g~~YGt~~--~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~ 134 (183)
T PF00625_consen 75 DGNYYGTSK--SAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRR 134 (183)
T ss_dssp TTEEEEEEH--HHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHT
T ss_pred cchhhhhcc--chhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhc
Confidence 4221 1110 011 112234555555433333344332 336889988887777777654
No 323
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.13 E-value=0.0034 Score=71.34 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=24.9
Q ss_pred CCcEEEeecCCCCCCcchhHhhhcccee
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
.+|.+|+|+|++|||||||+..|...|.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 3689999999999999999999887664
No 324
>PRK14526 adenylate kinase; Provisional
Probab=96.12 E-value=0.0021 Score=67.35 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=32.5
Q ss_pred EeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
|+|.||+||||||+|+.|++.++...+|+++..+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~ 37 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRE 37 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeecChHHHH
Confidence 66899999999999999999999999999999875
No 325
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.06 E-value=0.0017 Score=63.94 Aligned_cols=112 Identities=22% Similarity=0.162 Sum_probs=59.8
Q ss_pred ecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceeeecccccccCc
Q 002962 522 IGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGF 601 (862)
Q Consensus 522 I~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~~~~~r~~~ 601 (862)
|.||+||||||+|+.|++.+|...||+.+..+..-... + ++-.+.-..+.+|+.+.-...-.....+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~-------s---~~g~~i~~~l~~g~~vp~~~v~~ll~~~l-- 68 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSD-------S---ELGKQIQEYLDNGELVPDELVIELLKERL-- 68 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTT-------S---HHHHHHHHHHHTTSS--HHHHHHHHHHHH--
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhh-------h---HHHHHHHHHHHhhccchHHHHHHHHHHHH--
Confidence 46999999999999999999999999999887521110 0 00011112233444332221111111111
Q ss_pred eeeeecccceeEEEcceecccH---hh-------hhccceeeeeecccchheeheee
Q 002962 602 KELEVSEDCGVIIFEGVYALHP---EI-------RKSLDLWIAVVGGVHSHLISRVQ 648 (862)
Q Consensus 602 ~~~~~~~~~~vVIvEG~~~~~~---~l-------~~~~D~~I~v~~~~d~rl~Rri~ 648 (862)
.......-+|++|.=--.. .+ ....+..|+++++.+....|...
T Consensus 69 ---~~~~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 69 ---EQPPCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp ---HSGGTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred ---hhhcccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 0012245678888764321 12 22356888999988776665443
No 326
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.05 E-value=0.0033 Score=62.90 Aligned_cols=24 Identities=42% Similarity=0.634 Sum_probs=22.2
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
.+|+|+|++||||||++.+|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999876
No 327
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.05 E-value=0.0026 Score=63.81 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=28.0
Q ss_pred cCCCCCCcchhHhhhccceeeeEEeeccccc
Q 002962 523 GGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (862)
Q Consensus 523 ~G~sGSGKTTla~~L~~~l~~~vislDdfy~ 553 (862)
.|+|||||||+++.|+..++...++.|.++.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~ 31 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHP 31 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCc
Confidence 4999999999999999999988999988754
No 328
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.98 E-value=0.0077 Score=57.58 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=26.3
Q ss_pred HhcCCeEEEeecCCCCCCcchHHHHhhhceee
Q 002962 57 EKKGGIVTVGIGGPSGSGKTSLAEKLASVIGC 88 (862)
Q Consensus 57 ~~~~~~~iIgItG~sGSGKSTlA~~La~~Lg~ 88 (862)
+.-++..+|.+.|.-||||||+++.+++.+|.
T Consensus 10 ~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 10 QILKPGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp HHHSS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred HhCCCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 33456688999999999999999999998874
No 329
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.98 E-value=0.0027 Score=63.36 Aligned_cols=31 Identities=35% Similarity=0.564 Sum_probs=23.3
Q ss_pred EeecCCCCCCcchHHHHhhhceeeEEEeeccccc
Q 002962 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (862)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (862)
|+|+|++|+|||||++.|++. |+.++ ..+.+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar 32 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV--PEYAR 32 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE----TTH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE--eecHH
Confidence 899999999999999999997 98877 66544
No 330
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.98 E-value=0.0025 Score=71.26 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=30.3
Q ss_pred EeecCCCCCCcchhHhhhcccee------eeEEeecccccc
Q 002962 520 VGIGGPSGSGKTSLAHKMANIVG------CEVVSLESYFKS 554 (862)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~------~~vislDdfy~~ 554 (862)
+.++|++||||||+++.|+..|. +.++++|||+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~ 42 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPE 42 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccc
Confidence 56799999999999999987664 669999999964
No 331
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.97 E-value=0.0037 Score=72.03 Aligned_cols=39 Identities=41% Similarity=0.513 Sum_probs=35.0
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeE-EEeeccccc
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCT-LISMENYRV 98 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~-vI~~D~~~~ 98 (862)
.+|.+|.++|++||||||+|..||..+|+. +|++|.+..
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~ 292 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVRE 292 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHH
Confidence 468999999999999999999999999976 889999744
No 332
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.96 E-value=0.0058 Score=62.28 Aligned_cols=40 Identities=25% Similarity=0.329 Sum_probs=31.8
Q ss_pred cCCCcEEEeecCCCCCCcchhHhhhcccee-----eeEEeecccc
Q 002962 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYF 552 (862)
Q Consensus 513 ~~~~p~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy 552 (862)
....+.+|+|+|++||||||+++.|...+. +.+++.|++-
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 345678999999999999999999998762 4556666554
No 333
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.96 E-value=0.0032 Score=62.67 Aligned_cols=23 Identities=39% Similarity=0.804 Sum_probs=20.8
Q ss_pred EEeecCCCCCCcchhHhhhccce
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l 541 (862)
.|+|+||||||||||.+.++...
T Consensus 31 ~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhcc
Confidence 58899999999999999999854
No 334
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.95 E-value=0.0024 Score=69.35 Aligned_cols=150 Identities=18% Similarity=0.193 Sum_probs=67.5
Q ss_pred EEeecCCCCCCcchhHhhhcccee-----eeEEeecccccccccccCccCCCcccchhhhcccchhhcCCccccceeeec
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 593 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy~~~~~~~~n~~~p~t~D~~lL~~~L~~L~~g~~v~~P~yd~ 593 (862)
+|.|+|.+||||||+|+.|++.+. +.+++-|++.... .. |.++. ....+...+....
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~--~~--y~~~~--~Ek~~R~~l~s~v------------ 64 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDR--ND--YADSK--KEKEARGSLKSAV------------ 64 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TT--SS--S--GG--GHHHHHHHHHHHH------------
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccch--hh--hhchh--hhHHHHHHHHHHH------------
Confidence 677999999999999999999763 5566655554211 11 21111 1111111111100
Q ss_pred ccccccCceeeeecccceeEEEcceecccHhhh----------hccceeeeeecccchheeheeecccccccccccccce
Q 002962 594 ETGARSGFKELEVSEDCGVIIFEGVYALHPEIR----------KSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDI 663 (862)
Q Consensus 594 ~~~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~----------~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~ 663 (862)
........+||+++.+-.. ++| ..--..||++++.+.++.|-..|...+ .+
T Consensus 65 ----------~r~ls~~~iVI~Dd~nYiK-g~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~--------~~ 125 (270)
T PF08433_consen 65 ----------ERALSKDTIVILDDNNYIK-GMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPE--------RY 125 (270)
T ss_dssp ----------HHHHTT-SEEEE-S---SH-HHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S----------S
T ss_pred ----------HHhhccCeEEEEeCCchHH-HHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCC--------CC
Confidence 0011234799999998432 111 122368999999999999887665321 12
Q ss_pred eh-hhhhhhhhcccccccccccccccCCCCcCCCCcceEEEe-cCcccchhhhhhhc
Q 002962 664 MM-TVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLK-SNKQVAYQDILKIL 718 (862)
Q Consensus 664 ~~-~v~p~~~~~I~p~~~~ADivI~n~~~~rl~qe~~~~~~k-~~~~~~~~~~~~~m 718 (862)
.. .+..+..+|=.|... ..| +.+++.+. .+..++.++++..+
T Consensus 126 ~~e~i~~m~~RfE~P~~~---------nrW----D~plf~i~~~~~~~~~~~I~~~l 169 (270)
T PF08433_consen 126 PEETIDDMIQRFEEPDPK---------NRW----DSPLFTIDSSDEELPLEEIWNAL 169 (270)
T ss_dssp -HHHHHHHHHH---TTSS----------GG----GS-SEEEE-TTS---HHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCCC---------CCc----cCCeEEEecCCCCCCHHHHHHHH
Confidence 22 244566666445321 223 33455555 34455566666654
No 335
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.92 E-value=0.0035 Score=63.48 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=24.3
Q ss_pred CCcEEEeecCCCCCCcchhHhhhcccee
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
..+.+++|+|++|||||||++.|...|.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 4577999999999999999999887663
No 336
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.92 E-value=0.0041 Score=63.35 Aligned_cols=31 Identities=32% Similarity=0.492 Sum_probs=25.4
Q ss_pred EEEeecCCCCCCcchHHHHhhhce---eeEEEee
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVI---GCTLISM 93 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L---g~~vI~~ 93 (862)
++|+|.|+.||||||+++.|++.+ |..++..
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~ 34 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 369999999999999999999887 5444433
No 337
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.89 E-value=0.0067 Score=58.00 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=24.9
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceee
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGC 543 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~ 543 (862)
+..-+|.+.|+-|||||||++.++..+|.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 45678999999999999999999998873
No 338
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.88 E-value=0.0059 Score=59.21 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=25.5
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceee
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGC 543 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~ 543 (862)
....+|.+.|+.|||||||++.+++.+|+
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 34568999999999999999999998874
No 339
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.87 E-value=0.0044 Score=60.46 Aligned_cols=101 Identities=21% Similarity=0.405 Sum_probs=62.8
Q ss_pred EeecCCCCCCcchhHhhhccceeeeEEeecccccccccccCccCC-Ccc--cchhhhcccchhhc-CCccccceeeeccc
Q 002962 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDD-FSS--LDLSLLSKNISDIR-NGRRTKVPIFDLET 595 (862)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~n~~~-p~t--~D~~lL~~~L~~L~-~g~~v~~P~yd~~~ 595 (862)
|.|+|-+|+||||||.+|++.++...|.+-|+.+..+.-. .||. ..+ +|-+.+.+.|..+. .|..|
T Consensus 10 ILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~-gyDE~y~c~i~DEdkv~D~Le~~m~~Gg~I--------- 79 (176)
T KOG3347|consen 10 ILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYE-GYDEEYKCHILDEDKVLDELEPLMIEGGNI--------- 79 (176)
T ss_pred EEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchh-cccccccCccccHHHHHHHHHHHHhcCCcE---------
Confidence 5689999999999999999999999999999988643211 1221 122 34455555554432 22211
Q ss_pred ccccCceeeeecccceeEEEcceecccHhhhhccceeeeeecccchheeheeecc
Q 002962 596 GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD 650 (862)
Q Consensus 596 ~~r~~~~~~~~~~~~~vVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd 650 (862)
|=.-|. -++|+ ..||+.+.+.+|...-..|.-.|.
T Consensus 80 -----------------VDyHgC-d~Fpe--rwfdlVvVLr~~~s~LY~RL~sRg 114 (176)
T KOG3347|consen 80 -----------------VDYHGC-DFFPE--RWFDLVVVLRTPNSVLYDRLKSRG 114 (176)
T ss_pred -----------------Eeeccc-Cccch--hheeEEEEEecCchHHHHHHHHcC
Confidence 111111 12222 357888889998887777665543
No 340
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.85 E-value=0.005 Score=73.71 Aligned_cols=62 Identities=15% Similarity=0.152 Sum_probs=45.9
Q ss_pred eeeCCCccccCccchhhHHHHHHHHhcCCCcEEEeecCCCCCCcchhHhhhccceee------eEEeeccc
Q 002962 487 LVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGC------EVVSLESY 551 (862)
Q Consensus 487 ~~~~~~~~~~~e~~~~~~~~i~~~~~~~~~p~iIgI~G~sGSGKTTla~~L~~~l~~------~vislDdf 551 (862)
....|+++..-|..... .+....+.+++.+|.|+|.+||||||+|+.|+..|+. .+++.|..
T Consensus 365 G~~pP~~f~rpeV~~iL---~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 365 GLEIPEWFSFPEVVAEL---RRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred CCCCChhhcHHHHHHHH---HHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 36778888777663211 1222335567889999999999999999999998874 77777766
No 341
>COG3025 Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.0069 Score=68.27 Aligned_cols=118 Identities=14% Similarity=0.071 Sum_probs=84.6
Q ss_pred CCcccccceeeeeccCCCchhhhhcccceeeeecceeEEEeeCce-eeeccceeeccccceeeec--eec----------
Q 002962 255 GNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQ-RIVDKNFIIRPKAEFEVGR--MTL---------- 321 (862)
Q Consensus 255 ~~~~e~d~Y~~~~~r~~~~~~~al~~~~lRiR~~~~~~~lt~Kg~-~~~~~~~~~k~r~E~ev~v--~~~---------- 321 (862)
......++||+.|.+.++..+..+ |||+.++++.+|.|-. +..++. -.|.|+++.+ ...
T Consensus 32 ~~~~L~n~YyDTpd~~L~~~~~gL-----RIR~~~~~y~~TlKtaG~v~gGl---H~RpEyn~~L~~~~~~~~~~p~~~~ 103 (432)
T COG3025 32 TPQQLANIYYDTPDNWLRRHDMGL-----RIRREGGQYEQTLKTAGGVVGGL---HQRPEYNVPLPEDTLDLAELPRDRW 103 (432)
T ss_pred chhhHhhhhcCCchHHHHhCCceE-----EEeccCCeEEEEEEecCcccccc---ccCccccccCCCCCcchhhChhhhc
Confidence 345677999999999999999999 9999999999999944 333333 5899999999 111
Q ss_pred -----cchhccccEEEEEEeeceeeEee--C--eeEEeeehhc----cccceEEEEEcC----Cccchhhhhhhcc
Q 002962 322 -----GGLLDLGYSVVASYKRASTYVVY--G--NLSVSFETID----TLDETFMVLRGT----NRKTVGAEALRMG 380 (862)
Q Consensus 322 -----~~L~~LGy~~~~~~~K~R~~~~~--~--~~~v~lD~v~----~lG~~FvEiE~~----~~~~v~~~~~~Lg 380 (862)
......-..|+++.+=.|+.|.. | .++|.||... +.-.|+-|||-. +...+.++++.|-
T Consensus 104 p~~~~~~~~~~~L~PlFstdf~R~~w~v~~g~s~iEvALD~G~v~Age~q~picElElELKsG~~~aL~~la~~L~ 179 (432)
T COG3025 104 PAGIFPLDLGSELQPLFSTDFKREKWLVALGGSVIEVALDQGKVKAGERQEPICELELELKSGTPQALLALARTLA 179 (432)
T ss_pred ccccCCcccccccccceeeeeeeeeeeeecCCeEEEEEecccccccCcccCchhheehhhhcCCHHHHHHHHHHHH
Confidence 11224456788999999999975 3 6788899874 445556566643 4455555555543
No 342
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.81 E-value=0.005 Score=70.79 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=32.7
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccce-----eeeEEeecccc
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYF 552 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdfy 552 (862)
++|.+|+++|++||||||++.+|+..+ .+.++++|.|-
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 458999999999999999999999766 37788998765
No 343
>COG2954 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.81 E-value=0.017 Score=55.39 Aligned_cols=93 Identities=14% Similarity=0.039 Sum_probs=73.6
Q ss_pred eeeeecceeEEEeeCceeeeccceeeccccceeeeceeccchhccccEEEEEEeeceeeEeeCeeEEeeehhccc--cce
Q 002962 283 IKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTL--DET 360 (862)
Q Consensus 283 lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v~~~~~L~~LGy~~~~~~~K~R~~~~~~~~~v~lD~v~~l--G~~ 360 (862)
+|||..|.+.+||+||.. .+ -+|.|||-.+-+....+.|-+.+...++|+|...+.+|.+-.+|...|- |=.
T Consensus 39 VRVRi~g~~A~LTiK~~~---~~---~~R~EfEY~iPl~DA~e~l~~~~g~~IEK~R~~v~~~G~~wEVDvF~G~n~gLv 112 (156)
T COG2954 39 VRVRIVGDRAYLTIKGGA---SG---LSRSEFEYEIPLADAEEMLTTACGRVIEKTRYPVRHGGFLWEVDVFLGDNAGLV 112 (156)
T ss_pred EEEEEecceEEEEEEccc---cc---eeeeeeeecccccCHHHHHHHhcchheeeeEeeeeeCCEEEEEeeecCcccceE
Confidence 399999999999999665 33 4889999999555556666666777999999999999999999998643 334
Q ss_pred EEEEEcCCccchhhhhhhccc
Q 002962 361 FMVLRGTNRKTVGAEALRMGI 381 (862)
Q Consensus 361 FvEiE~~~~~~v~~~~~~Lgl 381 (862)
-.|+|-.++..-..+-..||-
T Consensus 113 vAEvEl~~e~~~~~lP~WLGr 133 (156)
T COG2954 113 VAEVELPDENADFDLPDWLGR 133 (156)
T ss_pred EEEEEcCccccCCcCccccCc
Confidence 579998777666677777775
No 344
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=95.79 E-value=0.013 Score=62.06 Aligned_cols=59 Identities=14% Similarity=0.007 Sum_probs=38.0
Q ss_pred eEEEEEeceeeeeeeeeecccCCccchhhHHhhhhhhhhcccCCCcccceeecCCccch
Q 002962 171 IRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFVS 229 (862)
Q Consensus 171 ~~I~Vda~~~~~l~R~i~RD~~~~~~~e~~~~~~~p~~~k~Iep~~~~ADiII~N~~~~ 229 (862)
-++|++|+.++-+.|.-.-...-.-+.......-+..+++++.|-+..||.||+.+..+
T Consensus 85 ~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A~~vIDTs~ls 143 (286)
T COG1660 85 RVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPLREIADLVIDTSELS 143 (286)
T ss_pred eEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHHHhhhEeecccCC
Confidence 45799999998777664311111112222233334567778899999999999998554
No 345
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.76 E-value=0.0078 Score=58.37 Aligned_cols=29 Identities=31% Similarity=0.336 Sum_probs=25.9
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceee
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGC 88 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~ 88 (862)
++..+|++.|+.||||||+++.+++.+|+
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 44568999999999999999999999885
No 346
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=95.73 E-value=0.0053 Score=67.38 Aligned_cols=39 Identities=41% Similarity=0.730 Sum_probs=35.4
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeeccc--ccc
Q 002962 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKS 554 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdf--y~~ 554 (862)
.+.+|.|.||+|||||-+|-.|++.++..+||.|.. |+.
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~ 42 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRG 42 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCC
Confidence 367899999999999999999999999999999987 654
No 347
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.72 E-value=0.0039 Score=61.53 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=26.2
Q ss_pred EEeecCCCCCCcchhHhhhccce---e--eeEEeecccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYF 552 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l---~--~~vislDdfy 552 (862)
+|.|.|++||||||+|+.|+..+ + +.+++.|.+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 47789999999999999999987 4 3444555543
No 348
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.72 E-value=0.0063 Score=66.64 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=31.6
Q ss_pred CcEEEeecCCCCCCcchhHhhhccce-------eeeEEeeccccc
Q 002962 516 LPVIVGIGGPSGSGKTSLAHKMANIV-------GCEVVSLESYFK 553 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l-------~~~vislDdfy~ 553 (862)
++.+|++.||+||||||++..|+..+ .+.++++|.|..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~ 237 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI 237 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence 46799999999999999999998654 267899998753
No 349
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.69 E-value=0.0062 Score=70.19 Aligned_cols=39 Identities=38% Similarity=0.500 Sum_probs=34.7
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeee-EEeeccccc
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCE-VVSLESYFK 553 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~-vislDdfy~ 553 (862)
.+|.+|.+.|++||||||+|..|+..++.. +++.|.+-.
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~ 292 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVRE 292 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHH
Confidence 469999999999999999999999999975 789987643
No 350
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.69 E-value=0.0077 Score=56.11 Aligned_cols=32 Identities=38% Similarity=0.324 Sum_probs=25.5
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeeccc
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~ 96 (862)
.+++|.|+|||||||+++.+. -|...+..|++
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di 47 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI--KRKHRLVGDDN 47 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeH
Confidence 568999999999999999987 34445666665
No 351
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.68 E-value=0.0072 Score=67.76 Aligned_cols=28 Identities=32% Similarity=0.369 Sum_probs=25.2
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhcee
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg 87 (862)
.+..+++|.||+||||||+|+.|++.++
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568899999999999999999998775
No 352
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.67 E-value=0.0066 Score=56.83 Aligned_cols=25 Identities=48% Similarity=0.741 Sum_probs=22.3
Q ss_pred EEEeecCCCCCCcchhHhhhcccee
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
..+.|.||+||||||+++.|+..++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4678899999999999999998775
No 353
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.66 E-value=0.0068 Score=67.96 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=25.2
Q ss_pred CCcEEEeecCCCCCCcchhHhhhcccee
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
.+..++++.||+||||||||+.|+..++
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3568899999999999999999999885
No 354
>PLN02772 guanylate kinase
Probab=95.64 E-value=0.011 Score=66.86 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=22.7
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhce
Q 002962 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L 86 (862)
...+|.|+||||||||||.+.|.+.+
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhc
Confidence 45689999999999999999997744
No 355
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.64 E-value=0.0042 Score=62.55 Aligned_cols=35 Identities=14% Similarity=0.323 Sum_probs=31.1
Q ss_pred EeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
|.+.|+.||||||+.+.|++.|+...+++|...-.
T Consensus 5 IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~ 39 (172)
T COG0703 5 IVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEK 39 (172)
T ss_pred EEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHH
Confidence 45679999999999999999999999999987653
No 356
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.64 E-value=0.0081 Score=66.36 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=33.6
Q ss_pred cCCCcEEEeecCCCCCCcchhHhhhccce-----eeeEEeecccc
Q 002962 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYF 552 (862)
Q Consensus 513 ~~~~p~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdfy 552 (862)
..+.+.+|+|+|++|||||||+..|...+ .+.++++|..+
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 44678999999999999999999988765 37788988655
No 357
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.64 E-value=0.0067 Score=61.94 Aligned_cols=42 Identities=38% Similarity=0.660 Sum_probs=34.0
Q ss_pred cCCCc-EEEeecCCCCCCcchhHhhhccce----eeeEEeecccccc
Q 002962 513 NKGLP-VIVGIGGPSGSGKTSLAHKMANIV----GCEVVSLESYFKS 554 (862)
Q Consensus 513 ~~~~p-~iIgI~G~sGSGKTTla~~L~~~l----~~~vislDdfy~~ 554 (862)
..++| +.|++.||+|||||+|..++.+.| ...||.-|=|+..
T Consensus 8 ~~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~ 54 (202)
T COG0378 8 EKNRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKE 54 (202)
T ss_pred HhcCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechh
Confidence 34566 999999999999999988866555 5888888888754
No 358
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.64 E-value=0.0054 Score=62.15 Aligned_cols=28 Identities=36% Similarity=0.411 Sum_probs=24.1
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhcee
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg 87 (862)
..+.+|+|+|++|||||||++.|...|.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 4567999999999999999999987663
No 359
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.63 E-value=0.0056 Score=63.82 Aligned_cols=28 Identities=36% Similarity=0.630 Sum_probs=24.7
Q ss_pred cCCCcEEEeecCCCCCCcchhHhhhccc
Q 002962 513 NKGLPVIVGIGGPSGSGKTSLAHKMANI 540 (862)
Q Consensus 513 ~~~~p~iIgI~G~sGSGKTTla~~L~~~ 540 (862)
+.+.+.+|.|+|||||||||+++.|.+.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4567889999999999999999999764
No 360
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.61 E-value=0.006 Score=60.40 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=23.5
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhcee
Q 002962 61 GIVTVGIGGPSGSGKTSLAEKLASVIG 87 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg 87 (862)
.++.|+|||++||||||++..+++.|.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 356799999999999999999997663
No 361
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.60 E-value=0.0079 Score=62.42 Aligned_cols=36 Identities=33% Similarity=0.675 Sum_probs=28.1
Q ss_pred cEEEeecCCCCCCcchhHhhhccce----eeeEEeecccc
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIV----GCEVVSLESYF 552 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l----~~~vislDdfy 552 (862)
|+.|+|+|++||||||+.+.+...+ ++.++..|-++
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~ 40 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYT 40 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCC
Confidence 6789999999999999999887764 34556655444
No 362
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.53 E-value=0.0087 Score=65.56 Aligned_cols=37 Identities=38% Similarity=0.617 Sum_probs=30.7
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhce----e---eEEEeecccc
Q 002962 61 GIVTVGIGGPSGSGKTSLAEKLASVI----G---CTLISMENYR 97 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L----g---~~vI~~D~~~ 97 (862)
++.+|+|.||+||||||++..|+..+ | +.+|++|.|.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 45699999999999999999998644 3 6789999864
No 363
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.52 E-value=0.0065 Score=63.01 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=20.0
Q ss_pred EEEeecCCCCCCcchhHhhhccc
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANI 540 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~ 540 (862)
-+|.|.||||||||||.+.|...
T Consensus 29 evv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46788999999999999998753
No 364
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.52 E-value=0.0048 Score=61.51 Aligned_cols=32 Identities=34% Similarity=0.522 Sum_probs=23.1
Q ss_pred EeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
|+|+|++|||||||++.|++. |+.++ +.+.+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~ 33 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV--PEYARE 33 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHH
Confidence 789999999999999999998 87766 555553
No 365
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=95.50 E-value=0.0071 Score=66.53 Aligned_cols=37 Identities=27% Similarity=0.458 Sum_probs=32.5
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeeccc--ccc
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKS 554 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdf--y~~ 554 (862)
+.+|.|+||+|||||.||-.|+.. +..+||.|.. |+.
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ 42 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKE 42 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCC
Confidence 348899999999999999999998 5699999977 664
No 366
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.47 E-value=0.007 Score=61.62 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=22.3
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
++|.|.|+.||||||+++.|++.+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999999987
No 367
>PLN02199 shikimate kinase
Probab=95.43 E-value=0.0095 Score=65.06 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=33.2
Q ss_pred EEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
.-|.+.|.+||||||+++.|++.+|+.++++|.+...
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~ 139 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQ 139 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHH
Confidence 3567899999999999999999999999999988764
No 368
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.43 E-value=0.0092 Score=64.99 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=32.5
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccce-----eeeEEeeccccc
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFK 553 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdfy~ 553 (862)
+++.+|+++|++|+||||++..|+..+ .+.++++|-|..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 457899999999999999999998766 267888887644
No 369
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.43 E-value=0.0095 Score=64.88 Aligned_cols=39 Identities=28% Similarity=0.383 Sum_probs=32.0
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhce---e--eEEEeeccccc
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRV 98 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~ 98 (862)
.++.+|+++|++|+||||++..||..+ | +.++++|-|..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 456899999999999999999998755 3 67789997633
No 370
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.41 E-value=0.007 Score=56.67 Aligned_cols=25 Identities=52% Similarity=0.731 Sum_probs=22.5
Q ss_pred EEEeecCCCCCCcchHHHHhhhcee
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIG 87 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg 87 (862)
..+.|.||+||||||+++.++..++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4689999999999999999998775
No 371
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.41 E-value=0.0093 Score=66.38 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=31.2
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccce-----eeeEEeecccc
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYF 552 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdfy 552 (862)
+++.+|++.||+||||||++..|+..+ .+.++.+|-|.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 467899999999999999999999876 26677777653
No 372
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=95.41 E-value=0.0079 Score=63.06 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=26.7
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEE-Eeecc
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGCTL-ISMEN 95 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~v-I~~D~ 95 (862)
++|||+|.+||||||+|+.+.+ .|.++ +++-+
T Consensus 1 miI~i~G~~gsGKstva~~~~~-~g~~~~~~~~d 33 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIE-NYNAVKYQLAD 33 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHh-cCCcEEEehhH
Confidence 3799999999999999999977 46555 77765
No 373
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=95.40 E-value=0.0085 Score=70.77 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=34.4
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhccceeeeEEeeccc
Q 002962 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdf 551 (862)
...|.+|.+.|++||||||+|+.++...+..+++.|.+
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l 403 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL 403 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH
Confidence 45788999999999999999999998888999999976
No 374
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.39 E-value=0.0066 Score=59.11 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=21.4
Q ss_pred EEeecCCCCCCcchHHHHhhhcee
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVIG 87 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg 87 (862)
+|+|.||+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999998654
No 375
>COG4639 Predicted kinase [General function prediction only]
Probab=95.38 E-value=0.008 Score=59.17 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=30.2
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
+.+|.+.|+|||||||+|+... ..+.++|+||+-..
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~ 37 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLL 37 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHH
Confidence 4578899999999999999853 36889999999763
No 376
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.37 E-value=0.011 Score=55.06 Aligned_cols=33 Identities=33% Similarity=0.248 Sum_probs=24.3
Q ss_pred cEEEeecCCCCCCcchhHhhhccceeeeEEeeccc
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdf 551 (862)
-.+++|.||||||||||++.+. -+...+.-||.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di 47 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI--KRKHRLVGDDN 47 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeH
Confidence 4678999999999999999987 23333444444
No 377
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.37 E-value=0.011 Score=65.38 Aligned_cols=41 Identities=29% Similarity=0.486 Sum_probs=33.3
Q ss_pred HhcCCeEEEeecCCCCCCcchHHHHhhhce-----eeEEEeecccc
Q 002962 57 EKKGGIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYR 97 (862)
Q Consensus 57 ~~~~~~~iIgItG~sGSGKSTlA~~La~~L-----g~~vI~~D~~~ 97 (862)
.....+.+|+|+|++||||||++..|+..+ .+.+++.|...
T Consensus 29 ~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 29 PYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 345678999999999999999999988754 36788888753
No 378
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=95.37 E-value=0.012 Score=62.09 Aligned_cols=39 Identities=38% Similarity=0.629 Sum_probs=33.9
Q ss_pred cCCCcEEEeecCCCCCCcchhHhhhccceee-eEEeeccc
Q 002962 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGC-EVVSLESY 551 (862)
Q Consensus 513 ~~~~p~iIgI~G~sGSGKTTla~~L~~~l~~-~vislDdf 551 (862)
+...|.||.|.|+||.||||+|..|+..||. .++++|..
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~I 124 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSI 124 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHH
Confidence 4467999999999999999999999999995 47788743
No 379
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.34 E-value=0.0078 Score=63.44 Aligned_cols=24 Identities=46% Similarity=0.666 Sum_probs=21.6
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-++||.|+||||||||++.|+-..
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhccc
Confidence 479999999999999999998755
No 380
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.34 E-value=0.006 Score=65.38 Aligned_cols=33 Identities=15% Similarity=0.389 Sum_probs=25.8
Q ss_pred EEeecCCCCCCcchhHhhhcccee-----eeEEeeccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY 551 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdf 551 (862)
+|.++|++||||||+|+.|++.++ +.+++.|.+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 467899999999999999998773 445555544
No 381
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.29 E-value=0.0082 Score=59.86 Aligned_cols=22 Identities=45% Similarity=0.762 Sum_probs=20.1
Q ss_pred EEeecCCCCCCcchHHHHhhhc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASV 85 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~ 85 (862)
.|+|+|||||||||+.+.+|..
T Consensus 31 ~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhc
Confidence 4999999999999999999864
No 382
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.28 E-value=0.0087 Score=61.64 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.3
Q ss_pred eEEEeecCCCCCCcchHHHHhhhcee
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIG 87 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg 87 (862)
..+|+|.|++||||||+++.|++.++
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999998763
No 383
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.27 E-value=0.0072 Score=58.86 Aligned_cols=24 Identities=29% Similarity=0.649 Sum_probs=21.2
Q ss_pred EEeecCCCCCCcchhHhhhcccee
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
+|+|.||+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 367899999999999999998764
No 384
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.26 E-value=0.016 Score=59.17 Aligned_cols=37 Identities=38% Similarity=0.707 Sum_probs=30.4
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce----eeEEEeeccccc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVI----GCTLISMENYRV 98 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L----g~~vI~~D~~~~ 98 (862)
++.|++.||+|||||||...+.+.| ...||..|-+..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~ 53 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTK 53 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeech
Confidence 5999999999999999987765544 578888888753
No 385
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.26 E-value=0.0089 Score=63.01 Aligned_cols=32 Identities=47% Similarity=0.639 Sum_probs=25.1
Q ss_pred EEEeecCCCCCCcchHHHHhhhce----eeEEEeec
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVI----GCTLISME 94 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L----g~~vI~~D 94 (862)
-++||.|.||||||||++.|+... |...++..
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~ 69 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGK 69 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCc
Confidence 469999999999999999998643 34455553
No 386
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.24 E-value=0.011 Score=66.32 Aligned_cols=36 Identities=28% Similarity=0.464 Sum_probs=31.9
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhccceeeeEEeec
Q 002962 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislD 549 (862)
-+.|+++||-||+|||||.+|++++..+|+.+|.++
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vs 180 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMS 180 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEE
Confidence 468999999999999999999999999997766555
No 387
>PRK06761 hypothetical protein; Provisional
Probab=95.23 E-value=0.01 Score=64.73 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=27.3
Q ss_pred EEEeecCCCCCCcchHHHHhhhceeeEEEeeccc
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~ 96 (862)
.+|.|+|++||||||+++.|++.++..-++.+.+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~ 37 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELY 37 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEE
Confidence 5799999999999999999999887444444443
No 388
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=95.23 E-value=0.01 Score=63.08 Aligned_cols=39 Identities=33% Similarity=0.463 Sum_probs=33.5
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceee---EEEeeccccc
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGC---TLISMENYRV 98 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~---~vI~~D~~~~ 98 (862)
....+|.+.|++|||||++|+.||+.||. +-+.+|++|.
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyv 110 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYV 110 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceee
Confidence 45689999999999999999999999994 4567888765
No 389
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.20 E-value=0.011 Score=66.89 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=31.7
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccce-----eeeEEeecccc
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYF 552 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdfy 552 (862)
++|.+|++.||.||||||++..|+..+ .+.++++|.|-
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 346899999999999999999998765 26688888764
No 390
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.20 E-value=0.0097 Score=61.75 Aligned_cols=32 Identities=41% Similarity=0.499 Sum_probs=24.2
Q ss_pred EEEeecCCCCCCcchHHHHhhhce----eeEEEeec
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVI----GCTLISME 94 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L----g~~vI~~D 94 (862)
-+++|+|||||||||+.+.|...- |...++.+
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~ 64 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGE 64 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCE
Confidence 479999999999999999996422 34455553
No 391
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.20 E-value=0.007 Score=64.62 Aligned_cols=28 Identities=32% Similarity=0.642 Sum_probs=22.0
Q ss_pred ecCCCCCCcchhHhhhcccee-----eeEEeec
Q 002962 522 IGGPSGSGKTSLAHKMANIVG-----CEVVSLE 549 (862)
Q Consensus 522 I~G~sGSGKTTla~~L~~~l~-----~~vislD 549 (862)
|.||.||||||+++.+++.+. +.++.+|
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence 579999999999999998773 6677777
No 392
>PRK14974 cell division protein FtsY; Provisional
Probab=95.18 E-value=0.011 Score=66.09 Aligned_cols=38 Identities=29% Similarity=0.525 Sum_probs=30.0
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhccce-----eeeEEeeccc
Q 002962 514 KGLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESY 551 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdf 551 (862)
.++|.+|+++|++||||||++.+|+..+ .+.++..|-|
T Consensus 137 ~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 3468999999999999999888888765 2556666655
No 393
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.18 E-value=0.0093 Score=62.82 Aligned_cols=24 Identities=42% Similarity=0.656 Sum_probs=21.5
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-+|+|.||||||||||.+.|....
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 479999999999999999998755
No 394
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.17 E-value=0.0088 Score=70.41 Aligned_cols=35 Identities=14% Similarity=0.417 Sum_probs=32.3
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeeccccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~ 553 (862)
.|+|+|++||||||+++.|++.+|+.++++|++..
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~ 36 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIE 36 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHH
Confidence 37899999999999999999999999999998864
No 395
>PRK06761 hypothetical protein; Provisional
Probab=95.16 E-value=0.01 Score=64.66 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=26.4
Q ss_pred EEEeecCCCCCCcchhHhhhccceeeeEEeecc
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES 550 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDd 550 (862)
.+|.|+|++||||||+++.|++.++...++.+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence 478999999999999999999988643334333
No 396
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=95.16 E-value=0.038 Score=57.47 Aligned_cols=108 Identities=19% Similarity=0.116 Sum_probs=60.1
Q ss_pred eEEEeecCCCCCCcchHHHHhhhcee------eEEEeecccccccCCC-CCCCccchHHHHHhhhhhhcCCCcccccccc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIG------CTLISMENYRVGVDEG-NDLDSIDFDALVQNLQDLTEGKDTLIPMFDY 134 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg------~~vI~~D~~~~~~~~~-~~~~s~d~~~l~~~L~~l~~~~~i~~p~~~~ 134 (862)
|.+|.|+|-++|||||.|+.|++.|. ...|.-|.- .+.... ..-++-+-..++..|..-.
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des-lg~~~ns~y~~s~~EK~lRg~L~S~v------------ 67 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES-LGIEKNSNYGDSQAEKALRGKLRSAV------------ 67 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh-cCCCCcccccccHHHHHHHHHHHHHH------------
Confidence 56799999999999999999998773 223333332 222221 1112223333333333211
Q ss_pred ccccccccceeeccCceEEEEcccchhhH---------hhhhccceEEEEEeceeeeeeeeeeccc
Q 002962 135 QQKNRIGSKVIKGASSGVVIVDGTYALDA---------RLRSLLDIRVAVVGGVHFSLISKVQYDI 191 (862)
Q Consensus 135 ~~~~~~~~~~~~~~~~~vVIvEG~~l~~~---------~l~~~~D~~I~Vda~~~~~l~R~i~RD~ 191 (862)
.......++||++...-..- ....-.-.+|+..+|.+.+.+|--.|..
T Consensus 68 ---------~R~Lsk~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~ 124 (281)
T KOG3062|consen 68 ---------DRSLSKGDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSERED 124 (281)
T ss_pred ---------HhhcccCcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCC
Confidence 01123456888886544321 1111123668888999988888766653
No 397
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.14 E-value=0.01 Score=68.01 Aligned_cols=32 Identities=38% Similarity=0.380 Sum_probs=27.4
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEE
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI 91 (862)
..+..|+|+|++|||||||++.|++.+|+..+
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v 248 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFNTTSA 248 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 34567999999999999999999998886543
No 398
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.12 E-value=0.012 Score=67.64 Aligned_cols=38 Identities=34% Similarity=0.468 Sum_probs=32.4
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhce---e--eEEEeecccc
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR 97 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~ 97 (862)
.++.+|+++|++||||||++..||..+ | +.++++|.|.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 457899999999999999999998755 3 6789999875
No 399
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=95.11 E-value=0.017 Score=62.71 Aligned_cols=56 Identities=13% Similarity=0.079 Sum_probs=33.1
Q ss_pred eeeeeecccchheeheeecccccccccccccceehhhhhhhhhcccccccccccccccC
Q 002962 631 LWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (862)
Q Consensus 631 ~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p~~~~ADivI~n~ 689 (862)
..+|++++.++-+.|.-+- +|..-+........-...+.+.++|-++.||+||+..
T Consensus 84 ~ilFLdA~d~~LirRy~eT---RR~HPL~~~~~~le~I~~Er~~L~~lr~~Ad~vIDTs 139 (284)
T PF03668_consen 84 RILFLDASDEVLIRRYSET---RRRHPLSSDGSLLEAIEKERELLEPLRERADLVIDTS 139 (284)
T ss_pred EEEEEECChHHHHHHHHhc---cCCCCCCCCCCcHHHHHHHHHHHHHHHHhCCEEEECC
Confidence 3679999888766554321 1222222211111224566777788899999999864
No 400
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.11 E-value=0.01 Score=62.49 Aligned_cols=24 Identities=46% Similarity=0.598 Sum_probs=21.0
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-+|+|.||||||||||.+.++...
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 369999999999999999997643
No 401
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.08 E-value=0.014 Score=65.09 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=31.2
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhce---e--eEEEeecccc
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR 97 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~ 97 (862)
+++.+|++.||+||||||++..||..+ | +.++++|-|.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 356899999999999999999998765 2 6678888753
No 402
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.08 E-value=0.013 Score=58.86 Aligned_cols=34 Identities=38% Similarity=0.598 Sum_probs=28.5
Q ss_pred EEeecCCCCCCcchHHHHhhhce---e--eEEEeecccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR 97 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~ 97 (862)
+++++|++||||||++..++..+ | +.++++|.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 68999999999999999998765 3 6778998753
No 403
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.07 E-value=0.01 Score=61.08 Aligned_cols=26 Identities=19% Similarity=0.440 Sum_probs=23.3
Q ss_pred cEEEeecCCCCCCcchhHhhhcccee
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
..+|.|.|+.||||||+++.|++.++
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998763
No 404
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.07 E-value=0.014 Score=58.22 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=31.5
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhce-eeEEEeeccc
Q 002962 61 GIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENY 96 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L-g~~vI~~D~~ 96 (862)
++++|.|+|.+|+||||+.+.+.+.+ +..+++-.++
T Consensus 3 ~~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~ 39 (189)
T COG2019 3 GRKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDL 39 (189)
T ss_pred CceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHH
Confidence 47899999999999999999998877 6777877775
No 405
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.06 E-value=0.01 Score=60.15 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=23.1
Q ss_pred EEEeecCCCCCCcchHHHHhhhceee
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIGC 88 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~ 88 (862)
.+|.|+|++||||||+|..|+..++.
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~ 27 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGL 27 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCC
Confidence 36899999999999999999987764
No 406
>PRK13975 thymidylate kinase; Provisional
Probab=95.03 E-value=0.011 Score=60.73 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=24.2
Q ss_pred EEEeecCCCCCCcchhHhhhccceee
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIVGC 543 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~ 543 (862)
.+|.|.|+.||||||+++.|++.++.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999999974
No 407
>PRK10646 ADP-binding protein; Provisional
Probab=94.98 E-value=0.023 Score=56.42 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=25.5
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceee
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGC 543 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~ 543 (862)
...-+|.+.|.-|||||||++.|++.||+
T Consensus 26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34568999999999999999999999973
No 408
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.98 E-value=0.012 Score=58.43 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=29.6
Q ss_pred CcEEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
-+.-|+|+|++|+||||++.++++.|.-.-+..-.||-+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~ 42 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITP 42 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEee
Confidence 467799999999999999999998875333444455544
No 409
>PRK10867 signal recognition particle protein; Provisional
Probab=94.98 E-value=0.015 Score=67.24 Aligned_cols=38 Identities=29% Similarity=0.436 Sum_probs=31.5
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccce------eeeEEeecccc
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIV------GCEVVSLESYF 552 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l------~~~vislDdfy 552 (862)
+.|.+|.++|++||||||++..|+..+ .+.++++|.|-
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 458999999999999999888888654 26788998764
No 410
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.98 E-value=0.01 Score=63.45 Aligned_cols=30 Identities=27% Similarity=0.568 Sum_probs=23.6
Q ss_pred ecCCCCCCcchHHHHhhhcee-----eEEEeeccc
Q 002962 67 IGGPSGSGKTSLAEKLASVIG-----CTLISMENY 96 (862)
Q Consensus 67 ItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~ 96 (862)
|+||+||||||+++.+.+.+. +.+|+.|--
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchH
Confidence 689999999999999998663 788999874
No 411
>PRK14974 cell division protein FtsY; Provisional
Probab=94.98 E-value=0.014 Score=65.27 Aligned_cols=38 Identities=32% Similarity=0.509 Sum_probs=30.0
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhce---e--eEEEeecccc
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR 97 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~ 97 (862)
.++.+|+++|++||||||++..|+..+ | +.++++|-|.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 457899999999999999888887654 3 5567777653
No 412
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.97 E-value=0.013 Score=58.89 Aligned_cols=34 Identities=32% Similarity=0.488 Sum_probs=28.1
Q ss_pred EEeecCCCCCCcchhHhhhccce---e--eeEEeecccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYF 552 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l---~--~~vislDdfy 552 (862)
++++.|++||||||++..++..+ | +.++++|.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 68899999999999999988765 2 6678888654
No 413
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.97 E-value=0.011 Score=49.45 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=20.5
Q ss_pred EEeecCCCCCCcchhHhhhccce
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l 541 (862)
+..|+|++||||||+..+++-.|
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999988654
No 414
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.97 E-value=0.011 Score=60.66 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.9
Q ss_pred EEeecCCCCCCcchhHhhhcccee
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
+|.++|++||||||||+.|+..|.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 577899999999999999999884
No 415
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=94.97 E-value=0.014 Score=66.74 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=22.0
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
.+|+|+|.+|||||||+.+|...|
T Consensus 2 kVi~IvG~sgSGKTTLiekLI~~L 25 (452)
T PRK14495 2 RVYGIIGWKDAGKTGLVERLVAAI 25 (452)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHH
Confidence 489999999999999999998776
No 416
>PRK10646 ADP-binding protein; Provisional
Probab=94.95 E-value=0.026 Score=55.96 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=25.7
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceee
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGC 88 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~ 88 (862)
++..+|.+.|.-||||||+++.+++.||+
T Consensus 26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 44468999999999999999999999984
No 417
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=94.92 E-value=0.018 Score=59.79 Aligned_cols=35 Identities=37% Similarity=0.692 Sum_probs=27.0
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce----eeEEEeeccc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVI----GCTLISMENY 96 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L----g~~vI~~D~~ 96 (862)
|+.|+|+|+.||||||+.+.+...+ ++.++..|.+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~ 39 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIY 39 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcC
Confidence 4689999999999999999887654 3455555544
No 418
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=94.90 E-value=0.0092 Score=61.14 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=31.9
Q ss_pred ccceeeeeecccchheeheeecccccccccccccceehhhhhhhhhcccc
Q 002962 628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEP 677 (862)
Q Consensus 628 ~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p 677 (862)
..|+.||+++++++++.|...|.... ......+++..+...|..++..
T Consensus 124 ~pd~~i~l~~~~~~~~~Ri~~R~r~~--e~~~~~~~~~~l~~~y~~~~~~ 171 (193)
T cd01673 124 PPDLVIYLDASPETCLKRIKKRGRPE--EQGIPLDYLEDLHEAYEKWFLP 171 (193)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCcHh--hhcCCHHHHHHHHHHHHHHHhh
Confidence 46899999999999988865554211 1111135667778888887654
No 419
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.88 E-value=0.02 Score=54.12 Aligned_cols=25 Identities=44% Similarity=0.670 Sum_probs=21.8
Q ss_pred cEEEeecCCCCCCcchhHhhhccce
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
...+.|.|++|+||||+++.++..+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4457789999999999999999876
No 420
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.88 E-value=0.018 Score=66.59 Aligned_cols=38 Identities=29% Similarity=0.390 Sum_probs=31.5
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccce------eeeEEeecccc
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIV------GCEVVSLESYF 552 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l------~~~vislDdfy 552 (862)
++|.+|.++|++||||||+|..|+..+ .+.++++|-|-
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R 140 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR 140 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 468999999999999999998888664 27788898753
No 421
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.86 E-value=0.013 Score=57.38 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=21.5
Q ss_pred EEeecCCCCCCcchhHhhhccce
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l 541 (862)
+|+|.|+++||||||++.|.+.|
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998876
No 422
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.83 E-value=0.033 Score=58.89 Aligned_cols=32 Identities=31% Similarity=0.500 Sum_probs=25.3
Q ss_pred EEeecCCCCCCcchHHHHhhhce----eeEEEeecc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVI----GCTLISMEN 95 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L----g~~vI~~D~ 95 (862)
.|||.|..|||||||.+.|+..+ |-..++.+-
T Consensus 55 ~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v 90 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV 90 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceE
Confidence 49999999999999999999866 334444444
No 423
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.83 E-value=0.015 Score=48.78 Aligned_cols=23 Identities=39% Similarity=0.733 Sum_probs=20.3
Q ss_pred EEeecCCCCCCcchHHHHhhhce
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L 86 (862)
+..|+|++||||||+..++.-.|
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999997543
No 424
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.82 E-value=0.018 Score=64.99 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=32.5
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccce-----eeeEEeeccccc
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFK 553 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdfy~ 553 (862)
.++.+|++.||+||||||++..|+..+ .+.++++|.|--
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 357899999999999999999998755 377899997743
No 425
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.79 E-value=0.012 Score=60.28 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=23.7
Q ss_pred cEEEeecCCCCCCcchhHhhhcccee
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
..+|.|.|+.||||||+++.|++.++
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36799999999999999999999885
No 426
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.79 E-value=0.017 Score=66.12 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=30.2
Q ss_pred CcEEEeecCCCCCCcchhHhhhccce------eeeEEeecccc
Q 002962 516 LPVIVGIGGPSGSGKTSLAHKMANIV------GCEVVSLESYF 552 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~~~l------~~~vislDdfy 552 (862)
++.+|++.||+||||||++..|+..+ .+.++++|-|-
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R 264 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR 264 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence 46789999999999999999999644 26678887654
No 427
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.77 E-value=0.02 Score=60.71 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=21.7
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
=+|+|.||||||||||.+.++...
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999865
No 428
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=94.75 E-value=0.018 Score=59.71 Aligned_cols=35 Identities=40% Similarity=0.571 Sum_probs=28.6
Q ss_pred EEEeecCCCCCCcchhHhhhccceeeeEEeecccc
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 552 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy 552 (862)
.++.|.||+|+|||.+|-.|++.+|.++|+.|..-
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq 36 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQ 36 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGG
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEeccee
Confidence 47889999999999999999999999999999873
No 429
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.75 E-value=0.019 Score=65.47 Aligned_cols=39 Identities=26% Similarity=0.423 Sum_probs=32.7
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccce---------eeeEEeeccccc
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIV---------GCEVVSLESYFK 553 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l---------~~~vislDdfy~ 553 (862)
.+|.+|.+.||+|+||||++.+|+..+ .+.++++|.|.-
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~ 219 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI 219 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence 457899999999999999999998754 377899998743
No 430
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.72 E-value=0.014 Score=58.99 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.4
Q ss_pred EEeecCCCCCCcchhHhhhccceee
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGC 543 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~ 543 (862)
+|.|+|++||||||+|..++..++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~ 27 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL 27 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC
Confidence 6889999999999999999987763
No 431
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.71 E-value=0.015 Score=66.66 Aligned_cols=32 Identities=34% Similarity=0.379 Sum_probs=27.5
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhccceeeeE
Q 002962 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEV 545 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~~~v 545 (862)
......|+|.|++|||||||++.|++.+|...
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~ 247 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTTS 247 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence 34577899999999999999999999888543
No 432
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.70 E-value=0.018 Score=66.73 Aligned_cols=37 Identities=32% Similarity=0.441 Sum_probs=31.6
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccce-----eeeEEeeccc
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESY 551 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdf 551 (862)
..|.+|.++|++||||||++.+|+..+ .+.++++|.|
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 468899999999999999999999766 2678888865
No 433
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.68 E-value=0.017 Score=56.51 Aligned_cols=33 Identities=33% Similarity=0.544 Sum_probs=25.0
Q ss_pred EEEeecCCCCCCcchHHHHhhhce---e---eEEEeecc
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVI---G---CTLISMEN 95 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L---g---~~vI~~D~ 95 (862)
++|+|+|+++||||||++.|...| | +.+.|+|.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 479999999999999999998765 3 23556555
No 434
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.68 E-value=0.018 Score=65.27 Aligned_cols=37 Identities=30% Similarity=0.486 Sum_probs=30.9
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhce-----eeEEEeecccc
Q 002962 61 GIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYR 97 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L-----g~~vI~~D~~~ 97 (862)
++.+|++.|+.||||||++..||..+ .+.++++|.+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 45789999999999999999998655 26688998764
No 435
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.66 E-value=0.022 Score=57.59 Aligned_cols=101 Identities=20% Similarity=0.207 Sum_probs=56.7
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce----eeEEEeeccccc------ccC----C---------------CCCC----Cc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVI----GCTLISMENYRV------GVD----E---------------GNDL----DS 108 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L----g~~vI~~D~~~~------~~~----~---------------~~~~----~s 108 (862)
--+++|.|+|||||||+.+.+|-.. |...|+..+.-. +.. + +-.| .+
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a 104 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNA 104 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccccCH
Confidence 3479999999999999999998743 456666666411 100 0 0011 23
Q ss_pred cchHHHHHhhhhhh-cCCCccc-cccccccccccccceeeccCceEEEEcccchhh
Q 002962 109 IDFDALVQNLQDLT-EGKDTLI-PMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD 162 (862)
Q Consensus 109 ~d~~~l~~~L~~l~-~~~~i~~-p~~~~~~~~~~~~~~~~~~~~~vVIvEG~~l~~ 162 (862)
.+.+++...+...- .+..-.. +..+...+.|+.-...-.+..+|+++|-++...
T Consensus 105 ~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsAL 160 (231)
T COG3840 105 EQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSAL 160 (231)
T ss_pred HHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhc
Confidence 33333333322211 0111112 235555666665444455677899999988754
No 436
>COG0645 Predicted kinase [General function prediction only]
Probab=94.66 E-value=0.02 Score=57.30 Aligned_cols=37 Identities=32% Similarity=0.497 Sum_probs=33.2
Q ss_pred EEEeecCCCCCCcchhHhhhccceeeeEEeecccccc
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
.++.+.|.+||||||+|+.|++.+|+..|..|..-+.
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~ 38 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKR 38 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHH
Confidence 4677899999999999999999999999999988654
No 437
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=94.60 E-value=0.0096 Score=59.31 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=26.9
Q ss_pred CCCCcchhHhhhccceeeeEEeecccccc
Q 002962 526 SGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (862)
Q Consensus 526 sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (862)
+||||||+++.|++.|+..++++|+++-.
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~ 29 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEE 29 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHH
Confidence 69999999999999999999999998753
No 438
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.55 E-value=0.02 Score=65.52 Aligned_cols=38 Identities=42% Similarity=0.605 Sum_probs=31.0
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhce----e--eEEEeeccccc
Q 002962 61 GIVTVGIGGPSGSGKTSLAEKLASVI----G--CTLISMENYRV 98 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L----g--~~vI~~D~~~~ 98 (862)
++.+|+++|++||||||++..||..+ | +.++++|.+..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 45789999999999999999998644 2 67788888643
No 439
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.54 E-value=0.028 Score=59.17 Aligned_cols=60 Identities=20% Similarity=0.191 Sum_probs=37.8
Q ss_pred eeEEeccc----eehhhHHHHHHHHhcCCeEEEeecCCCCCCcchHHHHhhhce-----eeEEEeeccc
Q 002962 37 VHASFDHG----YYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENY 96 (862)
Q Consensus 37 ~~~s~~~~----y~~l~~~i~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~L-----g~~vI~~D~~ 96 (862)
...+||+- -..++..+............+.|.|++|+|||++|+.++... .+.++++..+
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 34556551 123344444433322334568899999999999999998755 4566776654
No 440
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.53 E-value=0.016 Score=60.07 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.4
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhcc
Q 002962 514 KGLPVIVGIGGPSGSGKTSLAHKMAN 539 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~ 539 (862)
-.+..|-++.||||||||||.+.|-.
T Consensus 30 i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 30 IPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred ccCCceEEEECCCCcCHHHHHHHHHh
Confidence 34567899999999999999999865
No 441
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.027 Score=61.40 Aligned_cols=35 Identities=31% Similarity=0.476 Sum_probs=28.9
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeeccccc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (862)
.++|.+.||+|.||||||++||++|.+. ..|.|++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR--~~~~y~~ 211 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR--TNDRYYK 211 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee--ecCcccc
Confidence 4679999999999999999999988765 3455555
No 442
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.48 E-value=0.017 Score=55.45 Aligned_cols=25 Identities=44% Similarity=0.733 Sum_probs=22.2
Q ss_pred EEEeecCCCCCCcchhHhhhcccee
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
-+++|.|++|||||||.+.|+....
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CEEEEEccCCCccccceeeeccccc
Confidence 4789999999999999999998663
No 443
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.46 E-value=0.017 Score=59.84 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=20.3
Q ss_pred EEeecCCCCCCcchhHhhhccce
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l 541 (862)
+|.|+||+||||||+.+.|...+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999887655
No 444
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.45 E-value=0.018 Score=57.60 Aligned_cols=25 Identities=48% Similarity=0.701 Sum_probs=22.9
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L 86 (862)
|.+|+|+|++||||||++..|...+
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998866
No 445
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=94.43 E-value=0.022 Score=65.21 Aligned_cols=25 Identities=40% Similarity=0.545 Sum_probs=22.4
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L 86 (862)
|.+|+|+|.+|||||||+..|...|
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L 25 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAI 25 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998766
No 446
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.43 E-value=0.02 Score=55.32 Aligned_cols=26 Identities=46% Similarity=0.787 Sum_probs=22.9
Q ss_pred EeecCCCCCCcchHHHHhhhceeeEE
Q 002962 65 VGIGGPSGSGKTSLAEKLASVIGCTL 90 (862)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~v 90 (862)
|.|.|++|+|||++++.+++.++..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~ 27 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPV 27 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcce
Confidence 67899999999999999999887444
No 447
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.42 E-value=0.03 Score=66.29 Aligned_cols=33 Identities=36% Similarity=0.504 Sum_probs=27.9
Q ss_pred CCcEEEeecCCCCCCcchhHhhhccceeeeEEe
Q 002962 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 547 (862)
Q Consensus 515 ~~p~iIgI~G~sGSGKTTla~~L~~~l~~~vis 547 (862)
....|+.++||+||||||+.+.|++.+|..++.
T Consensus 43 ~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 43 SPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred CCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 345688899999999999999999999866543
No 448
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.42 E-value=0.04 Score=58.03 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCCcEEEeecCCCCCCcchhHhhhccce-----eeeEEeeccc
Q 002962 505 QAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESY 551 (862)
Q Consensus 505 ~~i~~~~~~~~~p~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdf 551 (862)
..++...........+.|.|++|||||++|+.++..+ .+.++++.++
T Consensus 30 ~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 30 ARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred HHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 3444443322233456689999999999999998765 3555555543
No 449
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.41 E-value=0.02 Score=58.62 Aligned_cols=24 Identities=21% Similarity=0.545 Sum_probs=21.6
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-++||.|++|||||||.+.|+..+
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998755
No 450
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.38 E-value=0.02 Score=59.77 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.9
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-++||.||+|||||||.+.|+..+
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999765
No 451
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.35 E-value=0.02 Score=59.77 Aligned_cols=24 Identities=42% Similarity=0.656 Sum_probs=21.9
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-++||.||+|||||||.+.|+..+
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCc
Confidence 479999999999999999998765
No 452
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.35 E-value=0.033 Score=65.94 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=28.8
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEe
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLIS 92 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~ 92 (862)
....++.++||+||||||+.+.||+.+|..++.
T Consensus 43 ~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 43 SPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred CCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 445699999999999999999999999977664
No 453
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.34 E-value=0.025 Score=64.59 Aligned_cols=34 Identities=32% Similarity=0.535 Sum_probs=31.1
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (862)
|.-|.+.||+|+||||+|+.|++.+++++++.|.
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 4568899999999999999999999999999985
No 454
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.32 E-value=0.021 Score=60.59 Aligned_cols=24 Identities=42% Similarity=0.571 Sum_probs=21.5
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
=+|+|.|||||||||+.+.+|-..
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999999754
No 455
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.30 E-value=0.021 Score=59.30 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=22.2
Q ss_pred cEEEeecCCCCCCcchhHhhhccce
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
--++||.||+|||||||.+.|+..+
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998765
No 456
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=94.29 E-value=0.049 Score=53.55 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=26.6
Q ss_pred hcCCeEEEeecCCCCCCcchHHHHhhhcee
Q 002962 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (862)
Q Consensus 58 ~~~~~~iIgItG~sGSGKSTlA~~La~~Lg 87 (862)
.-+..-+|.+.|.-||||||+++.+++.||
T Consensus 21 ~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 21 ALKAGDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred hCCCCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 345667899999999999999999999887
No 457
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=94.28 E-value=0.044 Score=53.89 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=26.4
Q ss_pred cCCCcEEEeecCCCCCCcchhHhhhcccee
Q 002962 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (862)
Q Consensus 513 ~~~~p~iIgI~G~sGSGKTTla~~L~~~l~ 542 (862)
.-...-||.+.|.=|||||||++.++..||
T Consensus 21 ~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 21 ALKAGDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred hCCCCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 345667899999999999999999999887
No 458
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.28 E-value=0.026 Score=61.47 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=28.1
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce---e-eEEEeecc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVI---G-CTLISMEN 95 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L---g-~~vI~~D~ 95 (862)
|.+|+|+|.+|||||||+..|...| | +.+|..|.
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G~V~~IKhd~ 38 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRGRVGTVKHMD 38 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 4689999999999999999998866 3 55666665
No 459
>PF13173 AAA_14: AAA domain
Probab=94.26 E-value=0.026 Score=54.08 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=27.5
Q ss_pred EEEeecCCCCCCcchhHhhhcccee----eeEEeeccccc
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIVG----CEVVSLESYFK 553 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~----~~vislDdfy~ 553 (862)
.++.|.||.||||||+++.+++.+. +..+++|+...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRD 42 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHH
Confidence 4688999999999999999987654 45556665543
No 460
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.25 E-value=0.019 Score=57.44 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=23.0
Q ss_pred cEEEeecCCCCCCcchhHhhhccce
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
+.|+||+|.++||||||..+|...|
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L 26 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKL 26 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHH
Confidence 5689999999999999999998776
No 461
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.25 E-value=0.022 Score=59.27 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.3
Q ss_pred cEEEeecCCCCCCcchhHhhhccce
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
--++||.|++|||||||.+.|+..+
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999999765
No 462
>PRK13768 GTPase; Provisional
Probab=94.25 E-value=0.027 Score=60.76 Aligned_cols=35 Identities=29% Similarity=0.511 Sum_probs=28.8
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce---e--eEEEeeccc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENY 96 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~ 96 (862)
+++|.|+|++||||||++..++..+ | +.+|+.|.-
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 5789999999999999999888655 3 667888863
No 463
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.24 E-value=0.033 Score=64.59 Aligned_cols=32 Identities=34% Similarity=0.583 Sum_probs=28.4
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhceeeEEEe
Q 002962 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLIS 92 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~ 92 (862)
+..+..|+||+||||||+.+.|++.+|..++.
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhCceeee
Confidence 45689999999999999999999999977653
No 464
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.24 E-value=0.028 Score=53.18 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=22.2
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L 86 (862)
...+.|.|++|+||||+++.++..+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999876
No 465
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.23 E-value=0.023 Score=59.26 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.7
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-++||.|++|||||||.+.|+..+
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998765
No 466
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.23 E-value=0.041 Score=52.67 Aligned_cols=40 Identities=28% Similarity=0.462 Sum_probs=33.6
Q ss_pred hhHHHHHHHHhc--CCCcEEEeecCCCCCCcchhHhhhccce
Q 002962 502 LSVQAIQALLEN--KGLPVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 502 ~~~~~i~~~~~~--~~~p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
.++.++..+.++ .++|+++..-|++|+|||.+++.|++.+
T Consensus 36 ~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 36 VVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 356677777654 6789999999999999999999999875
No 467
>PRK09087 hypothetical protein; Validated
Probab=94.22 E-value=0.021 Score=60.46 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=28.2
Q ss_pred EEeecCCCCCCcchhHhhhccceeeeEEeecccc
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 552 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy 552 (862)
.+.|.||+|||||+|++.+++..++.+++.++|-
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~ 79 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIHPNEIG 79 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcc
Confidence 3678999999999999999988777777776543
No 468
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.21 E-value=0.03 Score=64.53 Aligned_cols=33 Identities=39% Similarity=0.642 Sum_probs=24.5
Q ss_pred EEeecCCCCCCcchHHHHhhhce----eeEEEeeccc
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVI----GCTLISMENY 96 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L----g~~vI~~D~~ 96 (862)
.+||.||||||||||++.|.-.. |..-+|.-++
T Consensus 364 ~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l 400 (580)
T COG4618 364 ALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADL 400 (580)
T ss_pred eEEEECCCCccHHHHHHHHHcccccCCCcEEecchhh
Confidence 49999999999999999996543 3344444444
No 469
>PRK10867 signal recognition particle protein; Provisional
Probab=94.20 E-value=0.03 Score=64.74 Aligned_cols=39 Identities=31% Similarity=0.407 Sum_probs=31.7
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhce----e--eEEEeeccccc
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVI----G--CTLISMENYRV 98 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~L----g--~~vI~~D~~~~ 98 (862)
++|.+|.++|++||||||++..||..+ | +.++++|.|..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 457899999999999999888887644 3 67899998643
No 470
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.19 E-value=0.032 Score=63.67 Aligned_cols=37 Identities=35% Similarity=0.588 Sum_probs=31.3
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhce---------eeEEEeecccc
Q 002962 61 GIVTVGIGGPSGSGKTSLAEKLASVI---------GCTLISMENYR 97 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L---------g~~vI~~D~~~ 97 (862)
++.+|.+.|++|+||||++..||..+ .+.++++|.|.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R 218 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR 218 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence 46799999999999999999998754 26789999874
No 471
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.18 E-value=0.031 Score=56.63 Aligned_cols=35 Identities=34% Similarity=0.438 Sum_probs=26.4
Q ss_pred cEEEeecCCCCCCcchhHhhhccce----eeeEEeeccc
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIV----GCEVVSLESY 551 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l----~~~vislDdf 551 (862)
--+|+|.||||||||||.+.++-.. |...|.-.|.
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~ 63 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDH 63 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeec
Confidence 3589999999999999999999755 3444444443
No 472
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=94.17 E-value=0.022 Score=56.29 Aligned_cols=28 Identities=43% Similarity=0.596 Sum_probs=25.4
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeE
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIGCT 89 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~ 89 (862)
+++|+|.||-.||||||++.||+.+|.+
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt~ 35 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNTT 35 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHhCCC
Confidence 4689999999999999999999988754
No 473
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.17 E-value=0.023 Score=56.89 Aligned_cols=25 Identities=44% Similarity=0.591 Sum_probs=23.0
Q ss_pred eEEEeecCCCCCCcchHHHHhhhce
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L 86 (862)
|.+++|+|.++||||||...|...|
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L 26 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKL 26 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHH
Confidence 6799999999999999999998766
No 474
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.17 E-value=0.024 Score=59.10 Aligned_cols=25 Identities=28% Similarity=0.606 Sum_probs=22.1
Q ss_pred cEEEeecCCCCCCcchhHhhhccce
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
--++||.|++|||||||.+.|+..+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3479999999999999999998765
No 475
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.17 E-value=0.036 Score=62.74 Aligned_cols=70 Identities=20% Similarity=0.200 Sum_probs=0.0
Q ss_pred ccccccccceeEEeccceehhhHHHHHHHHhc---CCeEEEeecCCCCCCcchHHHHhhhcee-------eEEEeecccc
Q 002962 28 SPSILQSLPVHASFDHGYYLLVKSIQELREKK---GGIVTVGIGGPSGSGKTSLAEKLASVIG-------CTLISMENYR 97 (862)
Q Consensus 28 ~~~~~~~~~~~~s~~~~y~~l~~~i~~~~~~~---~~~~iIgItG~sGSGKSTlA~~La~~Lg-------~~vI~~D~~~ 97 (862)
+....+..+........|......+....... .+..+|++.||+|+||||....||.++. +.+|++|.|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYR 245 (407)
T COG1419 166 ELEILDMKDESYEDLRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYR 245 (407)
T ss_pred hhccccccccccchhhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccch
No 476
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.16 E-value=0.023 Score=65.01 Aligned_cols=34 Identities=32% Similarity=0.535 Sum_probs=30.9
Q ss_pred eEEEeecCCCCCCcchHHHHhhhceeeEEEeecc
Q 002962 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (862)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (862)
+.-|.+.||+|+||||+|+.|++.++++++..|.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 4568999999999999999999999998888876
No 477
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.16 E-value=0.023 Score=58.85 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.3
Q ss_pred EEeecCCCCCCcchHHHHhhhce
Q 002962 64 TVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L 86 (862)
+|.|+||+||||||+++.|...+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999887655
No 478
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.15 E-value=0.04 Score=57.91 Aligned_cols=52 Identities=29% Similarity=0.399 Sum_probs=33.9
Q ss_pred Eecc--ceehhhHHHHHHHH----hcCCeEEEeecCCCCCCcchHHHHhhhceeeEEE
Q 002962 40 SFDH--GYYLLVKSIQELRE----KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (862)
Q Consensus 40 s~~~--~y~~l~~~i~~~~~----~~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI 91 (862)
+|++ +-..++..+....+ +.....-+.+.||+|.||||||..+|+.+|+.+.
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 4666 55556665544432 2234556899999999999999999999986553
No 479
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.14 E-value=0.024 Score=58.90 Aligned_cols=25 Identities=36% Similarity=0.642 Sum_probs=22.2
Q ss_pred cEEEeecCCCCCCcchhHhhhccce
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
--+++|.|++|||||||.+.|+..+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999999765
No 480
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.14 E-value=0.024 Score=59.33 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=22.3
Q ss_pred cEEEeecCCCCCCcchhHhhhccce
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
--++||.||+|||||||.+.|+..+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998765
No 481
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.12 E-value=0.022 Score=54.65 Aligned_cols=24 Identities=46% Similarity=0.747 Sum_probs=21.5
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-+++|.|++|||||||.+.|+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 369999999999999999998755
No 482
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.12 E-value=0.024 Score=57.66 Aligned_cols=23 Identities=43% Similarity=0.606 Sum_probs=20.0
Q ss_pred CcEEEeecCCCCCCcchhHhhhc
Q 002962 516 LPVIVGIGGPSGSGKTSLAHKMA 538 (862)
Q Consensus 516 ~p~iIgI~G~sGSGKTTla~~L~ 538 (862)
.--+++|.||+|||||||.+.+.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34579999999999999999884
No 483
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.12 E-value=0.024 Score=60.11 Aligned_cols=24 Identities=38% Similarity=0.666 Sum_probs=21.8
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-++||.||+|||||||.+.|+..+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999998765
No 484
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.11 E-value=0.023 Score=57.94 Aligned_cols=24 Identities=38% Similarity=0.715 Sum_probs=21.8
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-+++|.||+|||||||.+.|+..+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 489999999999999999998765
No 485
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.11 E-value=0.025 Score=58.96 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.1
Q ss_pred cEEEeecCCCCCCcchhHhhhccce
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
--++||.|++|||||||.+.|+..+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999998765
No 486
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.10 E-value=0.025 Score=59.30 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=21.8
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-++||.|++|||||||.+.|+..+
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998765
No 487
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.09 E-value=0.025 Score=59.09 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.6
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-++||.|++|||||||.+.|+..+
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999998754
No 488
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.09 E-value=0.025 Score=59.92 Aligned_cols=24 Identities=42% Similarity=0.706 Sum_probs=21.8
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-++||.||+|||||||.+.|+..+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999765
No 489
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.08 E-value=0.025 Score=57.31 Aligned_cols=25 Identities=44% Similarity=0.635 Sum_probs=22.1
Q ss_pred cEEEeecCCCCCCcchhHhhhccce
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
--++||.|++|||||||.+.|+..+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999998755
No 490
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.08 E-value=0.031 Score=63.43 Aligned_cols=40 Identities=33% Similarity=0.458 Sum_probs=33.7
Q ss_pred CCCcEEEeecCCCCCCcchhHhhhcccee-----eeEEeeccccc
Q 002962 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK 553 (862)
Q Consensus 514 ~~~p~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy~ 553 (862)
.+.|.+|.+.|-+||||||.|-+|+..|. +.++++|-|-.
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~Rp 141 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRP 141 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCCh
Confidence 45789999999999999999999998873 67888876643
No 491
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.08 E-value=0.025 Score=58.55 Aligned_cols=24 Identities=38% Similarity=0.725 Sum_probs=21.8
Q ss_pred EEEeecCCCCCCcchhHhhhccce
Q 002962 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (862)
-+++|.||+|||||||.+.|+..+
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999998765
No 492
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.07 E-value=0.031 Score=60.09 Aligned_cols=34 Identities=38% Similarity=0.578 Sum_probs=26.6
Q ss_pred cEEEeecCCCCCCcchhHhhhcccee--eeEEeecc
Q 002962 517 PVIVGIGGPSGSGKTSLAHKMANIVG--CEVVSLES 550 (862)
Q Consensus 517 p~iIgI~G~sGSGKTTla~~L~~~l~--~~vislDd 550 (862)
--+++|.||.|||||||.+.|+..+. .-.|.+|+
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g 63 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDG 63 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECC
Confidence 45899999999999999999998775 22344444
No 493
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.07 E-value=0.048 Score=60.39 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCcEEEeecCCCCCCcchhHhhhccceee
Q 002962 504 VQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGC 543 (862)
Q Consensus 504 ~~~i~~~~~~~~~p~iIgI~G~sGSGKTTla~~L~~~l~~ 543 (862)
...+.....+...|.++.+.||+|+||||+++.+++.++.
T Consensus 30 ~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~ 69 (316)
T PHA02544 30 KETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA 69 (316)
T ss_pred HHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc
Confidence 3344444455556788888999999999999999987654
No 494
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.07 E-value=0.025 Score=57.80 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=21.3
Q ss_pred EEEeecCCCCCCcchHHHHhhhce
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (862)
-++||.|++|||||||.+.|+..+
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999998644
No 495
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.06 E-value=0.032 Score=62.62 Aligned_cols=36 Identities=28% Similarity=0.317 Sum_probs=31.2
Q ss_pred CCeEEEeecCCCCCCcchHHHHhhhceeeEEEeecc
Q 002962 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (862)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (862)
+.|.+++|-||+|+|||.+|+++++.+|+.+|.++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa 181 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSA 181 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEH
Confidence 568999999999999999999999999976655444
No 496
>PF13173 AAA_14: AAA domain
Probab=94.06 E-value=0.031 Score=53.54 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=28.3
Q ss_pred EEEeecCCCCCCcchHHHHhhhcee----eEEEeeccc
Q 002962 63 VTVGIGGPSGSGKTSLAEKLASVIG----CTLISMENY 96 (862)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg----~~vI~~D~~ 96 (862)
.++.|.|+-||||||+++.+++.+. +..++.|+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDP 40 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCH
Confidence 5799999999999999999987654 667777775
No 497
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.06 E-value=0.023 Score=54.81 Aligned_cols=25 Identities=44% Similarity=0.755 Sum_probs=21.6
Q ss_pred EeecCCCCCCcchhHhhhccceeee
Q 002962 520 VGIGGPSGSGKTSLAHKMANIVGCE 544 (862)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~ 544 (862)
|.|.||+|+|||++++.+++.++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~ 26 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRP 26 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcc
Confidence 4578999999999999999988633
No 498
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.03 E-value=0.034 Score=62.91 Aligned_cols=38 Identities=24% Similarity=0.389 Sum_probs=31.6
Q ss_pred CeEEEeecCCCCCCcchHHHHhhhce---e--eEEEeeccccc
Q 002962 61 GIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRV 98 (862)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~ 98 (862)
+..+|+++||+||||||++..|+..+ | +.+|++|.|.-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 46789999999999999999998654 2 67899998743
No 499
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.03 E-value=0.041 Score=62.43 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=20.5
Q ss_pred EeecCCCCCCcchHHHHhhhce
Q 002962 65 VGIGGPSGSGKTSLAEKLASVI 86 (862)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~L 86 (862)
|.|+|++|+||||+|++||+.+
T Consensus 266 ILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 266 ILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred eEEecCCCCChhHHHHHHHHHH
Confidence 8899999999999999999855
No 500
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.02 E-value=0.024 Score=59.00 Aligned_cols=23 Identities=39% Similarity=0.772 Sum_probs=21.4
Q ss_pred EEeecCCCCCCcchhHhhhccce
Q 002962 519 IVGIGGPSGSGKTSLAHKMANIV 541 (862)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l 541 (862)
+++|.||+|||||||.+.|+..+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999765
Done!