Query 002963
Match_columns 862
No_of_seqs 285 out of 672
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 14:17:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02830 UDP-sugar pyrophospho 100.0 5E-119 1E-123 1037.9 51.8 574 123-798 14-613 (615)
2 PLN02435 probable UDP-N-acetyl 100.0 1.3E-90 2.9E-95 783.7 36.8 438 135-684 21-472 (493)
3 PTZ00339 UDP-N-acetylglucosami 100.0 4.2E-82 9.1E-87 715.8 36.6 451 140-686 2-465 (482)
4 cd06424 UGGPase UGGPase cataly 100.0 2.3E-82 5E-87 685.0 27.8 308 289-623 1-315 (315)
5 KOG2388 UDP-N-acetylglucosamin 100.0 1.7E-77 3.8E-82 662.9 24.3 438 135-684 2-450 (477)
6 PLN02474 UTP--glucose-1-phosph 100.0 3.3E-75 7.2E-80 655.3 36.4 364 283-731 74-446 (469)
7 PF01704 UDPGP: UTP--glucose-1 100.0 2.3E-72 4.9E-77 629.4 24.8 404 222-720 1-415 (420)
8 cd04193 UDPGlcNAc_PPase UDPGlc 100.0 1.1E-71 2.3E-76 606.8 26.8 315 277-623 2-323 (323)
9 cd00897 UGPase_euk Eukaryotic 100.0 4.1E-68 8.8E-73 572.1 24.8 284 286-623 1-288 (300)
10 KOG2638 UDP-glucose pyrophosph 100.0 4.2E-63 9.1E-68 536.5 31.3 439 161-731 25-472 (498)
11 COG4284 UDP-glucose pyrophosph 100.0 8E-61 1.7E-65 531.7 24.7 413 135-663 14-435 (472)
12 cd04180 UGPase_euk_like Eukary 100.0 1.4E-56 3E-61 476.8 25.1 235 289-548 1-241 (266)
13 PRK05293 glgC glucose-1-phosph 97.5 0.0035 7.7E-08 70.1 18.2 196 287-548 2-205 (380)
14 cd06915 NTP_transferase_WcbM_l 97.5 0.0072 1.6E-07 61.4 17.7 176 291-546 1-180 (223)
15 PRK14352 glmU bifunctional N-a 97.4 0.0048 1E-07 71.6 17.7 186 288-548 4-191 (482)
16 cd02540 GT2_GlmU_N_bac N-termi 97.4 0.0067 1.5E-07 62.4 16.4 181 291-548 1-182 (229)
17 PRK00844 glgC glucose-1-phosph 97.4 0.0082 1.8E-07 68.3 18.7 206 285-548 2-212 (407)
18 cd04189 G1P_TT_long G1P_TT_lon 97.4 0.0076 1.6E-07 62.5 16.9 68 290-378 2-72 (236)
19 cd04197 eIF-2B_epsilon_N The N 97.3 0.0064 1.4E-07 62.9 15.9 132 291-473 3-142 (217)
20 TIGR02092 glgD glucose-1-phosp 97.3 0.0032 6.9E-08 70.3 14.4 193 288-548 2-203 (369)
21 cd04181 NTP_transferase NTP_tr 97.3 0.0096 2.1E-07 60.4 16.5 173 292-543 2-177 (217)
22 PRK14359 glmU bifunctional N-a 97.3 0.01 2.2E-07 67.3 18.3 178 289-548 3-180 (430)
23 PRK14360 glmU bifunctional N-a 97.3 0.0079 1.7E-07 68.7 17.4 185 289-548 2-186 (450)
24 PRK15480 glucose-1-phosphate t 97.3 0.013 2.7E-07 64.5 18.1 181 288-545 3-186 (292)
25 PRK05450 3-deoxy-manno-octulos 97.3 0.025 5.5E-07 59.2 19.4 188 288-548 2-194 (245)
26 PRK14356 glmU bifunctional N-a 97.3 0.0061 1.3E-07 69.8 16.0 184 288-548 5-189 (456)
27 cd02509 GDP-M1P_Guanylyltransf 97.2 0.0044 9.6E-08 67.1 13.8 198 290-549 2-208 (274)
28 PRK02862 glgC glucose-1-phosph 97.2 0.013 2.9E-07 67.3 18.2 209 288-548 3-225 (429)
29 cd06426 NTP_transferase_like_2 97.1 0.022 4.7E-07 58.4 16.3 173 291-546 1-176 (220)
30 COG1207 GlmU N-acetylglucosami 97.1 0.031 6.8E-07 64.0 18.8 186 288-549 2-189 (460)
31 PRK14358 glmU bifunctional N-a 97.1 0.019 4E-07 67.1 17.7 148 287-497 6-154 (481)
32 PRK14353 glmU bifunctional N-a 97.1 0.022 4.7E-07 65.1 17.8 184 288-548 5-189 (446)
33 PLN02241 glucose-1-phosphate a 97.0 0.022 4.8E-07 65.6 17.7 215 287-548 2-231 (436)
34 PRK14355 glmU bifunctional N-a 97.0 0.025 5.3E-07 65.3 18.0 185 288-548 3-188 (459)
35 TIGR01207 rmlA glucose-1-phosp 97.0 0.021 4.6E-07 62.5 16.5 177 291-544 2-181 (286)
36 cd02538 G1P_TT_short G1P_TT_sh 97.0 0.015 3.3E-07 60.8 14.4 177 290-544 2-182 (240)
37 TIGR01173 glmU UDP-N-acetylglu 97.0 0.011 2.4E-07 67.2 14.2 61 291-372 3-63 (451)
38 cd02508 ADP_Glucose_PP ADP-glu 97.0 0.01 2.2E-07 60.7 12.5 136 292-472 2-143 (200)
39 PRK00725 glgC glucose-1-phosph 97.0 0.039 8.5E-07 63.4 18.7 201 287-548 14-224 (425)
40 PF00483 NTP_transferase: Nucl 96.9 0.004 8.6E-08 64.8 9.2 185 292-548 3-192 (248)
41 TIGR01208 rmlA_long glucose-1- 96.8 0.047 1E-06 60.7 17.5 176 291-544 2-180 (353)
42 cd06422 NTP_transferase_like_1 96.8 0.057 1.2E-06 55.6 16.7 66 291-378 2-70 (221)
43 cd06425 M1P_guanylylT_B_like_N 96.8 0.057 1.2E-06 56.3 16.6 180 291-547 3-187 (233)
44 cd02517 CMP-KDO-Synthetase CMP 96.8 0.15 3.2E-06 53.2 19.6 185 288-548 1-191 (239)
45 PRK14357 glmU bifunctional N-a 96.7 0.043 9.2E-07 62.8 16.5 177 290-548 2-179 (448)
46 cd06428 M1P_guanylylT_A_like_N 96.7 0.087 1.9E-06 55.9 17.2 182 292-546 2-190 (257)
47 TIGR02091 glgC glucose-1-phosp 96.6 0.053 1.1E-06 60.3 16.1 196 292-548 2-206 (361)
48 TIGR00454 conserved hypothetic 96.5 0.0039 8.5E-08 63.8 5.7 61 290-372 2-62 (183)
49 cd02524 G1P_cytidylyltransfera 96.5 0.1 2.3E-06 55.3 16.4 190 291-545 1-198 (253)
50 PRK13385 2-C-methyl-D-erythrit 96.4 0.0045 9.9E-08 64.7 5.7 66 288-372 2-67 (230)
51 PRK13368 3-deoxy-manno-octulos 96.4 0.21 4.7E-06 52.0 18.0 103 288-452 2-104 (238)
52 PRK09451 glmU bifunctional N-a 96.3 0.076 1.7E-06 61.2 15.4 180 288-548 5-185 (456)
53 COG2266 GTP:adenosylcobinamide 96.2 0.0075 1.6E-07 61.7 5.7 61 290-373 2-62 (177)
54 TIGR01099 galU UTP-glucose-1-p 96.2 0.17 3.8E-06 53.5 16.2 61 291-372 3-66 (260)
55 TIGR01479 GMP_PMI mannose-1-ph 96.2 0.073 1.6E-06 62.2 14.5 195 291-549 3-210 (468)
56 PLN02728 2-C-methyl-D-erythrit 96.2 0.0077 1.7E-07 64.9 5.8 43 287-336 23-65 (252)
57 cd04198 eIF-2B_gamma_N The N-t 96.2 0.063 1.4E-06 55.6 12.3 130 291-474 3-135 (214)
58 PF01128 IspD: 2-C-methyl-D-er 96.1 0.0059 1.3E-07 64.7 4.7 65 289-372 1-65 (221)
59 PRK14354 glmU bifunctional N-a 96.1 0.19 4.2E-06 57.6 16.8 182 289-548 3-185 (458)
60 TIGR02623 G1P_cyt_trans glucos 96.0 0.49 1.1E-05 50.5 18.7 190 291-543 2-195 (254)
61 cd02523 PC_cytidylyltransferas 96.0 0.11 2.3E-06 53.9 13.3 61 291-372 1-64 (229)
62 TIGR01105 galF UTP-glucose-1-p 96.0 0.016 3.4E-07 63.9 7.3 64 288-372 3-69 (297)
63 COG0746 MobA Molybdopterin-gua 96.0 0.014 3.1E-07 60.5 6.6 100 288-453 4-103 (192)
64 cd04182 GT_2_like_f GT_2_like_ 96.0 0.0093 2E-07 58.9 5.0 38 289-335 1-38 (186)
65 PRK00560 molybdopterin-guanine 95.9 0.0086 1.9E-07 61.6 4.4 39 288-335 8-47 (196)
66 COG1213 Predicted sugar nucleo 95.8 0.025 5.3E-07 60.5 7.3 66 290-375 5-70 (239)
67 PRK10122 GalU regulator GalF; 95.6 0.034 7.3E-07 61.2 8.0 64 287-371 2-68 (297)
68 cd02513 CMP-NeuAc_Synthase CMP 95.6 0.22 4.9E-06 51.0 13.5 39 288-336 1-39 (223)
69 PLN02917 CMP-KDO synthetase 95.5 0.24 5.2E-06 54.6 14.2 187 288-548 47-237 (293)
70 TIGR03310 matur_ygfJ molybdenu 95.5 0.015 3.3E-07 57.9 4.5 48 291-358 2-49 (188)
71 PF12804 NTP_transf_3: MobA-li 95.3 0.012 2.5E-07 57.4 2.7 48 291-358 1-48 (160)
72 TIGR02665 molyb_mobA molybdopt 95.3 0.016 3.5E-07 58.0 3.7 38 289-334 1-38 (186)
73 cd02503 MobA MobA catalyzes th 95.2 0.016 3.5E-07 57.7 3.4 48 290-358 2-49 (181)
74 PRK02726 molybdopterin-guanine 95.0 0.021 4.5E-07 58.9 3.9 39 288-335 7-45 (200)
75 TIGR00453 ispD 2-C-methyl-D-er 94.9 0.02 4.3E-07 58.9 3.4 38 291-335 2-39 (217)
76 cd02516 CDP-ME_synthetase CDP- 94.9 0.021 4.5E-07 58.5 3.4 41 289-336 1-41 (218)
77 TIGR03202 pucB xanthine dehydr 94.9 0.024 5.2E-07 57.4 3.7 37 290-335 2-38 (190)
78 PRK00155 ispD 2-C-methyl-D-ery 94.8 0.025 5.5E-07 58.7 3.9 41 288-335 3-43 (227)
79 PRK00317 mobA molybdopterin-gu 94.8 0.027 5.9E-07 57.1 3.9 39 288-334 3-41 (193)
80 PRK14490 putative bifunctional 94.7 0.049 1.1E-06 61.6 6.1 40 287-335 173-212 (369)
81 PRK14489 putative bifunctional 94.3 0.046 1E-06 61.8 4.6 41 286-334 3-43 (366)
82 COG1209 RfbA dTDP-glucose pyro 93.8 1.2 2.5E-05 49.1 13.8 158 292-512 4-164 (286)
83 TIGR00466 kdsB 3-deoxy-D-manno 93.8 3.1 6.7E-05 44.3 16.8 187 291-548 2-194 (238)
84 COG1208 GCD1 Nucleoside-diphos 93.7 0.18 4E-06 56.9 8.0 178 290-544 3-184 (358)
85 cd02541 UGPase_prokaryotic Pro 93.6 0.1 2.2E-06 55.5 5.5 61 291-372 3-66 (267)
86 PRK14500 putative bifunctional 93.6 0.06 1.3E-06 60.8 3.8 39 288-335 160-198 (346)
87 COG1211 IspD 4-diphosphocytidy 93.5 0.12 2.7E-06 55.2 5.8 65 288-371 4-68 (230)
88 PRK09382 ispDF bifunctional 2- 93.2 0.076 1.6E-06 60.6 3.9 43 287-336 4-46 (378)
89 cd04183 GT2_BcE_like GT2_BcbE_ 92.7 0.078 1.7E-06 54.9 2.7 38 291-335 1-41 (231)
90 cd02507 eIF-2B_gamma_N_like Th 92.0 0.27 5.9E-06 51.1 5.8 63 291-374 3-68 (216)
91 COG0448 GlgC ADP-glucose pyrop 91.4 3.7 8.1E-05 47.3 14.2 200 287-549 4-210 (393)
92 PRK13389 UTP--glucose-1-phosph 90.7 0.34 7.3E-06 53.6 5.2 62 290-372 10-74 (302)
93 PRK15460 cpsB mannose-1-phosph 89.8 0.52 1.1E-05 55.5 6.0 203 289-549 6-219 (478)
94 cd02518 GT2_SpsF SpsF is a gly 88.2 0.94 2E-05 47.3 6.0 60 291-372 2-62 (233)
95 KOG1322 GDP-mannose pyrophosph 86.7 17 0.00037 41.3 14.7 187 287-548 8-199 (371)
96 PF14134 DUF4301: Domain of un 86.4 13 0.00028 44.2 14.2 60 382-451 235-297 (513)
97 COG0836 {ManC} Mannose-1-phosp 84.1 1.4 3E-05 49.4 4.9 201 290-549 3-212 (333)
98 TIGR03584 PseF pseudaminic aci 79.8 68 0.0015 33.9 15.5 182 291-545 2-185 (222)
99 COG1210 GalU UDP-glucose pyrop 73.4 5.3 0.00011 44.2 5.1 53 291-358 7-59 (291)
100 COG4750 LicC CTP:phosphocholin 73.1 2.5 5.4E-05 44.6 2.5 60 291-372 3-65 (231)
101 COG2068 Uncharacterized MobA-r 71.4 4.7 0.0001 42.6 4.0 39 288-335 5-43 (199)
102 TIGR03808 RR_plus_rpt_1 twin-a 54.6 57 0.0012 38.7 9.1 80 750-836 141-227 (455)
103 PF05726 Pirin_C: Pirin C-term 35.5 97 0.0021 29.0 5.9 67 782-852 18-87 (104)
104 COG5608 LEA14-like dessication 29.4 1.9E+02 0.0042 29.8 7.1 66 721-801 52-140 (161)
105 COG1861 SpsF Spore coat polysa 29.3 78 0.0017 34.5 4.6 67 288-375 3-69 (241)
106 PF04962 KduI: KduI/IolB famil 25.1 2.3E+02 0.0049 31.3 7.5 61 775-835 38-110 (261)
107 PLN03014 carbonic anhydrase 21.8 1.2E+02 0.0026 35.0 4.6 13 80-92 83-95 (347)
108 KOG1460 GDP-mannose pyrophosph 21.4 8.6E+02 0.019 28.0 10.8 185 289-545 4-193 (407)
109 PRK00742 chemotaxis-specific m 20.9 1.5E+02 0.0031 33.3 5.1 38 800-837 225-262 (354)
110 TIGR03808 RR_plus_rpt_1 twin-a 20.1 9.5E+02 0.021 28.9 11.5 97 754-856 116-221 (455)
No 1
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=5.5e-119 Score=1037.90 Aligned_cols=574 Identities=25% Similarity=0.335 Sum_probs=512.7
Q ss_pred chhHHhhccCCccHHHHHHHHHHcCCccccccCCccchhhhhhhhHHHHHHHHHhhhhccccCCCcccchhhcchhhHHH
Q 002963 123 NYFARVLASLNLDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKD 202 (862)
Q Consensus 123 ~~~~~~~~~l~~~~~~L~~~L~~~gQeHll~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~e 202 (862)
++|+++++.|++++++|+++|.++||+|||++|++ -. +++ ++
T Consensus 14 ~~~~~~~~~~~~~~~~l~~~L~~~gQ~HL~~~w~~---l~--------------------------------~~~---~e 55 (615)
T PLN02830 14 PSLHSNLALLSPDQRALVRRLLELGQSHLFEHWPE---PG--------------------------------VDD---DD 55 (615)
T ss_pred cccccccccCChhHHHHHHHHHHcCcHHHHhhhhc---cC--------------------------------CCH---HH
Confidence 68999999999999999999999999999999554 00 234 48
Q ss_pred HHHHHHHHHHHhccccCcChHHHHHHHHHHHHhccccccccccccccccccccccccc-c-CCCCcccCCChHHHHHHHH
Q 002963 203 LNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-H-VPSGLDLSQNTEYAAQAAL 280 (862)
Q Consensus 203 ~~~Ll~qL~~ld~~y~~~ggl~~Y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~d~~-~-vP~g~~l~~~~~~~~~~e~ 280 (862)
|++|++||+.+|..| +||+.+|+.++.+++.++. .+. ++++++ + +|.+..++++++....+++
T Consensus 56 ~~~L~~qL~~ld~~y--~g~l~~~~~~~~~~l~~s~--~~~-----------~~~~~i~P~vp~~~~~~~~~~~~~~~~~ 120 (615)
T PLN02830 56 KRRLLEQVARLDESY--PGGLAAYVSNAKELLADSK--EGV-----------NPFEGWTPSVPEGEVLEYGSEEFVELEE 120 (615)
T ss_pred HHHHHHHHHhccccc--cchHHHHHHHHHHHHhhcc--cCC-----------CchhhcccCCCccccccccchhhhHHHH
Confidence 999999999999999 5999999999999998762 122 356675 4 6888888887776677888
Q ss_pred HhhhccCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcC-CcccceEEEecCCC
Q 002963 281 WGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYG-KQCITPVAIMTSSA 359 (862)
Q Consensus 281 ~G~e~L~kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G-~~~~IPl~IMTS~~ 359 (862)
+|+++|+|+|||+|||||||||||++||+ +|||+++ +|+||||++++||+++|++|.++.+ ..+.||||||||+
T Consensus 121 ~Gl~~l~kvavllLaGGlGTRLG~~~pK~--~lpv~~~--~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~- 195 (615)
T PLN02830 121 AGLREAGNAAFVLVAGGLGERLGYSGIKV--ALPTETA--TGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSD- 195 (615)
T ss_pred HHHHHhCcEEEEEecCCcccccCCCCCCc--ceecccC--CCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCc-
Confidence 99999999999999999999999999999 9999976 9999999999999999999977553 5689999999999
Q ss_pred CCchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccC--CCCccccCCCCcHHHHHHHhcCchHHHHHcCc
Q 002963 360 KNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMR--PFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGR 437 (862)
Q Consensus 360 k~The~T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~--~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gi 437 (862)
+||++|++||++|+|||++++||+||+|+++||+++++|++++++ +++++|+||||||||+||++||+||+|+++|+
T Consensus 196 -~T~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~ 274 (615)
T PLN02830 196 -DTHARTLKLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGK 274 (615)
T ss_pred -chhHHHHHHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCC
Confidence 899999999999999999999999999999999998889999987 88999999999999999999999999999999
Q ss_pred eEEEEEeCCCccccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCcc---
Q 002963 438 KGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKF--- 513 (862)
Q Consensus 438 kyi~V~qvDN~La~v-DP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~--- 513 (862)
||+|||||||+|+++ || +|+|||+.++++|++++|.| .++|++|++|+.++.||++ +++||||+|++++
T Consensus 275 ~yi~v~~vDN~L~~~Adp---~flG~~~~~~~d~~~kvv~K--~~~E~vGvi~~~~~~dG~~--l~~vVEYse~~~ll~~ 347 (615)
T PLN02830 275 KWVVFFQDTNGLVFKAIP---AALGVSATKGFDMNSLAVPR--KAKEAIGAIAKLTHKDGRE--MVINVEYNQLDPLLRA 347 (615)
T ss_pred EEEEEEeccchhhhcccH---HHhHHHHhcCCceEEEEEEC--CCCcccceEEEEecCCCCe--eeEEEeecccCHHHHh
Confidence 999999999999998 88 55899999999999998655 5689999999877789874 5699999999987
Q ss_pred -CCCCCCCCCCCccccCccceeeeEEeHHHHHhhhcccccCCccccccccCCCceeecCCCCccccCcceeccchhhhhh
Q 002963 514 -GITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIAD 592 (862)
Q Consensus 514 -~~~~~~~~dg~l~S~F~~Ninn~~fsL~~l~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~~~~~~rLE~~Mqd~~~ 592 (862)
..++++..+++++|.|||||||+|++|++|++++++ +.+.+|++ +||| |+|.++ +.++.++|||||||||++
T Consensus 348 a~~p~g~l~~~~~~s~FPgNtN~L~v~L~a~~~~l~~-~~~~lp~i-vNpK----~~d~~~-~v~q~~trle~~mq~f~~ 420 (615)
T PLN02830 348 TGHPDGDVNDETGYSPFPGNINQLILKLGPYVKELAK-TGGVIEEF-VNPK----YKDATK-TAFKSPTRLECMMQDYPK 420 (615)
T ss_pred ccCCCcccccccccccCCCCceeeEeeHHHHHHHHHh-CCCcccee-ccCc----ccCCCC-ceeecchHHHHHHHHHhh
Confidence 335567778889999999999999999999999986 78899986 5999 999774 578999999999999999
Q ss_pred hcccccccccccceeeeccceeeeeeccCCCchhhhhccccCCCCCCChhhHHHHHHHHHHHHHHHCCcccCCcc----c
Q 002963 593 NFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIE----G 668 (862)
Q Consensus 593 ~F~~~y~~~~~k~~f~~~~Rf~~fsPvKN~~~sa~k~~~~~~~~~~dsp~ta~~dl~~~~~~~L~~aG~~vp~~~----~ 668 (862)
.|. ...++||+++++|.+|+||||++.+|++|+..+ + +.+||+++++|+|++++++|+.+|+.+.++. +
T Consensus 421 ~~~-----~~~~vg~~v~~~~~~f~PVKn~~s~a~~k~~~~-~-~~~~~~s~e~d~y~~~~llL~~s~~~~~~~~~~~~~ 493 (615)
T PLN02830 421 TLP-----PSAKVGFTVFDNWLAYSPVKNSPADGAAKVPEG-N-PTHSATSGEMAIYGANCLILRKAGADVEEPVEDVVF 493 (615)
T ss_pred hcC-----cccccCceecCchheeccccCChHHhhhhcccC-C-CccCcchhhHHHHHHHHHHHHhcCCccccCcccccc
Confidence 985 355799999999999999999999999999765 4 4559999999999999999999888875443 5
Q ss_pred CCcccccCCCeEEEecCCccccHHHHhhhc-CC-CCCCCCcEEEEEEceEEEee--eeeeEEEEeccCCCCccccCCCcc
Q 002963 669 NDKYIDDGPPYLILLHPALGLLWEVTRQKF-KG-GSVSKGSELQIEVAEFLWRN--LDGSLIIVAENVMGSTRIADNGES 744 (862)
Q Consensus 669 ~~~~~~~gP~~~I~L~P~~~~~~~~~~~k~-~g-gsIs~~S~L~veG~dv~~~~--ldGslvI~a~~~~g~~~~~~~g~~ 744 (862)
++.+++.+|+ |+|+|+|+++|+++++|| ++ ++|+++|+|+|+|+++++++ |||+|+|.|++ |+
T Consensus 494 ~~~~~~~~P~--I~L~p~f~~~~~~~~~k~~~~~~si~~~s~L~v~G~~~~~~~v~LdG~viI~a~~--~~--------- 560 (615)
T PLN02830 494 NGIEVEVGPR--IVLKPAFALTFSELKKKVAPGSVKISQRSTLVLEGADIVIENLSLDGALVVRAVP--GA--------- 560 (615)
T ss_pred CCcccCCCCe--EEECchhhhHHHHHHHHhcCCCCcccCCCeEEEEeeeEEecCeEEEEEEEEEcCC--CC---------
Confidence 6778888896 999999999999999999 76 58999999999999999999 99999999993 44
Q ss_pred ceecccccceEEEeeeEEeeCceeeecCCC--------ccccccceeeeEEEEEEecCceeE
Q 002963 745 ILQYGYRCGRCKLNNVKVLNKGIDWDCGDN--------TYWKHDVQWFEALKVILHGNAEFE 798 (862)
Q Consensus 745 i~~~~~~~g~~~~~~~~V~N~G~~~~~~~~--------~~w~~~~~r~e~~~i~~~g~~ef~ 798 (862)
+|+|+|++|+|+||+|++++. .++...+.|.|..++++.-+|.|.
T Consensus 561 ---------~~~i~g~~v~N~g~~~~~~~~~~~~~~~~~irg~~~~~~e~~~~~~~~~g~~~ 613 (615)
T PLN02830 561 ---------EVTVGGLRVKNKGWTWEPVDKGTSAPEEIRIRGFVIKKVETAELVFDKPGKYT 613 (615)
T ss_pred ---------eEEecCeEEecCCcEEEecCCCCCcchhhhhcceeEeeeeeEEEEecCCCcee
Confidence 789999999999999999643 488899999999999999988874
No 2
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=1.3e-90 Score=783.68 Aligned_cols=438 Identities=18% Similarity=0.215 Sum_probs=369.0
Q ss_pred cHHHHHHHHHHcCCccccccCCccchhhhhhhhHHHHHHHHHhhhhccccCCCcccchhhcchhhHHHHHHHHHHHHHHh
Q 002963 135 DQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIE 214 (862)
Q Consensus 135 ~~~~L~~~L~~~gQeHll~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~Ll~qL~~ld 214 (862)
+..+|+++|.++||+|||++|++ |+++ +|++|++||..+|
T Consensus 21 ~~~~l~~~l~~~gQ~HLl~~w~~-------------------------------------ls~~---e~~~L~~qL~~iD 60 (493)
T PLN02435 21 PPQALLERLKDYGQEDAFALWDE-------------------------------------LSPE---ERDLLVRDIESLD 60 (493)
T ss_pred cHHHHHHHHHHcChHHHHHhhhh-------------------------------------CCHH---HHHHHHHHHHhcC
Confidence 56689999999999999999555 7766 7999999999999
Q ss_pred ccccCcChHHHHHHHHHHHHhccccccccccccccccccccccccc-cCCCCcccCCC---hHHHHHHHHHhhhcc--Cc
Q 002963 215 QFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-HVPSGLDLSQN---TEYAAQAALWGIEGL--PE 288 (862)
Q Consensus 215 ~~y~~~ggl~~Y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~d~~-~vP~g~~l~~~---~~~~~~~e~~G~e~L--~k 288 (862)
..| +. ..+++++... +. +++.+ ++|.+...+.. .+....+++.|+++| +|
T Consensus 61 ~~~-----l~---~~~~~~~~~~----~~------------~~~~i~P~p~~~~~~~~~~~~~~~~~~~~~Gl~~I~~gk 116 (493)
T PLN02435 61 LPR-----ID---RIIRCSLRSQ----GL------------PVPAIEPVPENSVSTVEERTPEDRERWWKMGLKAISEGK 116 (493)
T ss_pred HHH-----HH---HHHHHHhhcc----CC------------chhccCCCChhhccchhccChHHHHHHHHHHHHHHhcCC
Confidence 854 33 3334444221 11 22444 56665544442 245567788999999 59
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcC----CcccceEEEecCCCCCchH
Q 002963 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYG----KQCITPVAIMTSSAKNNHE 364 (862)
Q Consensus 289 vAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G----~~~~IPl~IMTS~~k~The 364 (862)
||||+||||||||||+++||| ||+|++| ++|||||+++|||+++|++|.+++| ..+.||||||||+ .||+
T Consensus 117 vavvlLAGGqGTRLG~~~PKg--~~~Iglp--s~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~--~T~~ 190 (493)
T PLN02435 117 LAVVLLSGGQGTRLGSSDPKG--CFNIGLP--SGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSP--FTDE 190 (493)
T ss_pred EEEEEeCCCcccccCCCCCcc--ceecCCC--CCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCc--chhH
Confidence 999999999999999999999 9999988 9999999999999999999987664 4588999999999 7999
Q ss_pred HHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEe
Q 002963 365 RITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQ 444 (862)
Q Consensus 365 ~T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~q 444 (862)
+|++||++|+|||++++||+||+|+++||++ .||+++++++++++|+|+||||||.||++||+|++|+++|++|+||||
T Consensus 191 ~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~-~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~ 269 (493)
T PLN02435 191 ATRKFFESHKYFGLEADQVTFFQQGTLPCVS-KDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYG 269 (493)
T ss_pred HHHHHHHhCCCCCCCccceEEEecCCcceEC-CCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEe
Confidence 9999999999999999999999999999998 899999999999999999999999999999999999999999999999
Q ss_pred CCCccccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCC-C
Q 002963 445 VSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS-S 522 (862)
Q Consensus 445 vDN~La~v-DP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~-d 522 (862)
|||+|+++ ||.| +|+|+.++++|+++| +||+.++|+||++|+. ..||+ ++||||+|++++. +..+.+ +
T Consensus 270 vDN~L~~~~DP~f---lG~~~~~~~d~~~kV-v~K~~~~EkvG~i~~~-~~~g~----~~vvEYsEl~~~~-~~~~~~~~ 339 (493)
T PLN02435 270 VDNALVRVADPTF---LGYFIDKGVASAAKV-VRKAYPQEKVGVFVRR-GKGGP----LTVVEYSELDQAM-ASAINQQT 339 (493)
T ss_pred cccccccccCHHH---HHHHHhcCCceEEEe-eecCCCCCceeEEEEe-cCCCC----EEEEEeccCCHHH-HhccCccc
Confidence 99999987 9955 899999999999995 9999999999999973 36888 9999999999986 333333 4
Q ss_pred CCccccCcc-ceeeeEEeHHHHHhhhcccccCCccccccccCCCceeecCCCCccccCcceeccchhhhhhhcccccccc
Q 002963 523 NGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSR 601 (862)
Q Consensus 523 g~l~S~F~~-Ninn~~fsL~~l~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~~~~~~rLE~~Mqd~~~~F~~~y~~~ 601 (862)
|.+. |.+ |||||||+++||+++.+. .+..+|+|+|. |||||+|.. ++++|||.|++|++..
T Consensus 340 g~L~--~~~gnI~~h~fs~~fL~~~~~~-~~~~l~~H~A~--Kkip~~~~~-----~ngiK~E~FiFDvf~~-------- 401 (493)
T PLN02435 340 GRLR--YCWSNVCLHMFTLDFLNQVANG-LEKDSIYHLAE--KKIPSIHGY-----TMGLKLEQFIFDAFPY-------- 401 (493)
T ss_pred cccc--cchhhHHHhhccHHHHHHHHHh-hhhcCCceeec--cccCccCCC-----cceEEeeeeeecchhh--------
Confidence 8876 987 999999999999999764 34569999999 999999943 3799999996665443
Q ss_pred cccceeeeccceeeeeeccCCCchhhhhccccCCCCCCChhhHHHHHHHHHHHHHHHCCcccCCcc-cCCcccccCCCeE
Q 002963 602 CYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIE-GNDKYIDDGPPYL 680 (862)
Q Consensus 602 ~~k~~f~~~~Rf~~fsPvKN~~~sa~k~~~~~~~~~~dsp~ta~~dl~~~~~~~L~~aG~~vp~~~-~~~~~~~~gP~~~ 680 (862)
+.++++.+++|..+|+|+||++++. .|||+||+.+++++|++||+++|+.+.+.. .....+|+.|.
T Consensus 402 a~~~~~~eV~R~~EFaPlKN~~g~~-----------~Dsp~tar~~l~~~~~~wl~~aG~~~~~~~~~~~~~vEisP~-- 468 (493)
T PLN02435 402 APSTALFEVLREEEFAPVKNANGSN-----------FDTPESARLLVLRLHTRWVVAAGGFLTHSVPLYATGVEVSPL-- 468 (493)
T ss_pred cCceEEEEEchhhccCcccCCCCCC-----------CCCHHHHHHHHHHHHHHHHHHcCCEecCCccccCCcEEeCCc--
Confidence 3466778899999999999988643 479999999999999999999998774221 11234667774
Q ss_pred EEec
Q 002963 681 ILLH 684 (862)
Q Consensus 681 I~L~ 684 (862)
+.++
T Consensus 469 ~sY~ 472 (493)
T PLN02435 469 CSYA 472 (493)
T ss_pred eeeC
Confidence 6665
No 3
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=4.2e-82 Score=715.83 Aligned_cols=451 Identities=16% Similarity=0.149 Sum_probs=363.9
Q ss_pred HHHHHHcCCccccccCCccchhhhhhhhHHHHHHHHHhhhhccccCCCcccchhhcchhhHHHHHHHHHHH-HHHhcccc
Q 002963 140 IKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTL-AEIEQFYD 218 (862)
Q Consensus 140 ~~~L~~~gQeHll~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~Ll~qL-~~ld~~y~ 218 (862)
+++|.++||+|||++|++ |+++ +|.+|.+|| ..+....
T Consensus 2 ~~~l~~~gQ~hl~~~~~~-------------------------------------l~~~---e~~~l~~ql~~~~~~~d- 40 (482)
T PTZ00339 2 LKVLTGDGQDHLREALKR-------------------------------------RSEG---EFTPLATQILSSLTNVD- 40 (482)
T ss_pred hhhhhhcCHHHHHHHHHh-------------------------------------CCHH---HHHHHHHHHHHHhhccC-
Confidence 568999999999999555 7776 899999999 7443321
Q ss_pred CcChHHHHHHHHHHHHhccccccccccccccccccccccccc-cCCCCcccCC--ChHHHHHHHHHhhhccC--cEEEEE
Q 002963 219 CVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-HVPSGLDLSQ--NTEYAAQAALWGIEGLP--ELGEIY 293 (862)
Q Consensus 219 ~~ggl~~Y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~d~~-~vP~g~~l~~--~~~~~~~~e~~G~e~L~--kvAvVl 293 (862)
+..+...+..+......+....+..+ +.+. +.+ ++|.....+. .++...+++++|+++|+ |+|+|+
T Consensus 41 -~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~p~~~~~~~~~~~~~~~~~~~~~~Gl~~i~~gkvavVi 111 (482)
T PTZ00339 41 -FKHRNAVLEPKLEEYNAEAPVGIDID--SIHN------CNIEPPNNNTFIDIYEKEKERKELKESGLEIIKKGEVAVLI 111 (482)
T ss_pred -HHHHHHHHHHHhhhhhcccccccccc--cccc------cccCCCCcccccccccCHHHHHHHHHhHHHHHhcCCeEEEE
Confidence 36677777776654433210000000 0110 124 4454333222 34667788999999998 699999
Q ss_pred ecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcC--CcccceEEEecCCCCCchHHHHHHHH
Q 002963 294 PLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYG--KQCITPVAIMTSSAKNNHERITSLCE 371 (862)
Q Consensus 294 LAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G--~~~~IPl~IMTS~~k~The~T~~fle 371 (862)
||||+|||||++.||+ ++||+++ +|+||||++++||++++.++.+++| ..+.||||||||+ .||+.|++||+
T Consensus 112 LAGG~GTRLg~~~PK~--ll~I~~~--~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~--~t~~~t~~~f~ 185 (482)
T PTZ00339 112 LAGGLGTRLGSDKPKG--LLECTPV--KKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSS--FNHDQTRQFLE 185 (482)
T ss_pred ECCCCcCcCCCCCCCe--EeeecCC--CCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCc--chHHHHHHHHH
Confidence 9999999999999999 9999965 9999999999999999998876665 3478999999999 79999999999
Q ss_pred HhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCcccc
Q 002963 372 RLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAA 451 (862)
Q Consensus 372 ~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN~La~ 451 (862)
+|+|||++++||+||+|+++||++.++|+++++++++++|+|+||||||.||+++|+|++|+++|+||+||+||||+|++
T Consensus 186 ~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k 265 (482)
T PTZ00339 186 ENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNILAK 265 (482)
T ss_pred hccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCccccc
Confidence 99999999999999999999999977899999999999999999999999999999999999999999999999999999
Q ss_pred c-cHhHHHHhhhhhhcCC-ceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCC-CCCcccc
Q 002963 452 T-DLTLLALAGIGLHHGK-KLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS-SNGLQAD 528 (862)
Q Consensus 452 v-DP~il~flG~~~~~~~-~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~-dg~l~S~ 528 (862)
+ ||.| +|+|+.+++ ++..++ + |+.++|+||++|+ .||+ +++|||+|++++. ++.+.. +|.+ .
T Consensus 266 ~~DP~f---lG~~~~~~~~~~~~kv-v-k~~~~EkvG~~~~---~~g~----~~vvEYsEi~~~~-~~~~~~~~g~l--~ 330 (482)
T PTZ00339 266 VLDPEF---IGLASSFPAHDVLNKC-V-KREDDESVGVFCL---KDYE----WQVVEYTEINERI-LNNDELLTGEL--A 330 (482)
T ss_pred ccCHHH---hHHHHHCCchhheeee-e-cCCCCCceeEEEE---eCCc----ccEEEEeccChhh-hhcccccCCee--c
Confidence 8 9955 899999999 888886 5 6678999999998 6888 8999999999986 333332 2444 5
Q ss_pred Ccc-ceeeeEEeHHHHHhhhcccccCCccccccccCCCceeecCCCCccccCcceeccchhhhhhhccccccccccccee
Q 002963 529 FPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVE 607 (862)
Q Consensus 529 F~~-Ninn~~fsL~~l~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~~~~~~rLE~~Mqd~~~~F~~~y~~~~~k~~f 607 (862)
|.+ |||||||+++||+++++......||+|+|. |||||+|... ..++++|||.|++|++.. +.++++
T Consensus 331 f~~gnI~~h~fsl~fl~~~~~~~~~~~l~~H~a~--Kkip~~~~~~--~~png~K~E~FiFDvf~~--------~~~~~~ 398 (482)
T PTZ00339 331 FNYGNICSHIFSLDFLKKVAANRLYESTPYHAAR--KKIPYINGPT--DKTMGIKLEAFIFDIFRY--------AKNVLI 398 (482)
T ss_pred ccccceEEEEEEHHHHHHHhhhhhhhcCCceeec--cccCeeCCCC--CCcceeeehhhhhhHHHh--------ccccce
Confidence 776 999999999999998753133469999999 9999999532 457899999986554443 346778
Q ss_pred eeccceeeeeeccCCCchhhhhccccCCCCCCChhhHHHHHHHHHHHHHHHCCcccCCc-ccCCcccccCCCeEEEecCC
Q 002963 608 DDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEI-EGNDKYIDDGPPYLILLHPA 686 (862)
Q Consensus 608 ~~~~Rf~~fsPvKN~~~sa~k~~~~~~~~~~dsp~ta~~dl~~~~~~~L~~aG~~vp~~-~~~~~~~~~gP~~~I~L~P~ 686 (862)
.+++|..+|+|+||+++.. .|||+||+.+++++|++||.++|+.+.+. ...+..+|+.|. |.+.-.
T Consensus 399 ~ev~R~~eFsPlKNa~g~~-----------~d~p~tar~~l~~~~~~wl~~ag~~~~~~~~~~~~~~Eisp~--~sy~ge 465 (482)
T PTZ00339 399 LEVDREDEFAPIKNADGAA-----------ADTILNAQKLLLSLHTRWLEAALETVAGNPREGLNLCEISPL--VSYGGE 465 (482)
T ss_pred eeechhhccccccCCCCCC-----------CCCHHHHHHHHHHHHHHHHHHCCCeeeccccCCCceEEecCc--ceeCCC
Confidence 8899999999999988653 47999999999999999999999976432 112345677884 666533
No 4
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=100.00 E-value=2.3e-82 Score=684.98 Aligned_cols=308 Identities=23% Similarity=0.283 Sum_probs=278.7
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHHH
Q 002963 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (862)
Q Consensus 289 vAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~ 368 (862)
+|||+||||||||||+++||| +|||+++ +|+||||++++||+++|++|.+.++ +.||||||||+ +||++|++
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg--~~~v~~~--~~~s~f~l~~~~i~~l~~~~~~~~~--~~IPl~IMTS~--~Th~~T~~ 72 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKI--GLPVELT--TNTTYLQYYLNYIRAFQEASKKGEK--MEIPFVIMTSD--DTHSKTLK 72 (315)
T ss_pred CEEEEecCCCccccCCCCCce--eeeccCC--CCCcHHHHHHHHHHHHHHHhhccCC--CceeEEEECCC--chhHHHHH
Confidence 589999999999999999999 9999977 9999999999999999999876555 89999999999 79999999
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcc--cccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 002963 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQW--LVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (862)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki--~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvD 446 (862)
||++|+|||++++||+||+|+++||+++.+|++ .++++++++|+|+||||||+||+++|+||+|+++|+||++|+|||
T Consensus 73 ~fe~n~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vd 152 (315)
T cd06424 73 LLEENNYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDT 152 (315)
T ss_pred HHHHCCccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecc
Confidence 999999999999999999999999998789999 478899999999999999999999999999999999999999999
Q ss_pred Cccccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccC----CCCCCCC
Q 002963 447 NVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFG----ITRGPFS 521 (862)
Q Consensus 447 N~La~v-DP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~----~~~~~~~ 521 (862)
|+|+++ || +|+|+|+.+++++++++|.|+ |.|+||++|++++.||+ ++++||||||++++. ..+++.+
T Consensus 153 N~L~~~adP---~fiG~~~~~~~d~~~k~v~~~--~~E~vG~~~~~~~~~g~--~~v~nvEYsel~~~~~~~~~~~g~~~ 225 (315)
T cd06424 153 NALAFKAIP---AVLGVSATKSLDMNSLTVPRK--PKEAIGALCKLTKNNGK--SMTINVEYNQLDPLLRASGKDDGDVD 225 (315)
T ss_pred hhhhhccCh---hhEEEEecCCCceEeEEEeCC--CCCceeeEEEEecCCCc--eEEEEEEeecCCHHHHhcCCCCCCcc
Confidence 999999 99 559999999999999997654 57999999986667888 345679999999864 1233445
Q ss_pred CCCccccCccceeeeEEeHHHHHhhhcccccCCccccccccCCCceeecCCCCccccCcceeccchhhhhhhcccccccc
Q 002963 522 SNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSR 601 (862)
Q Consensus 522 dg~l~S~F~~Ninn~~fsL~~l~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~~~~~~rLE~~Mqd~~~~F~~~y~~~ 601 (862)
+.+++|+||||||+|+|+|++|.+++++ +.+.+|+|+ ||| |.|.++ ..+++|+||||||||+|+.|+ .
T Consensus 226 ~~~~~s~f~gNi~~~~f~l~~~~~~l~~-~~~~~~~~~-n~k----y~d~~~-~~~~~p~rlE~~m~D~~~~f~-----~ 293 (315)
T cd06424 226 DKTGFSPFPGNINQLVFSLGPYMDELEK-TKGAIPEFI-NPK----YKDATK-TAFKSPTRLECMMQDIPLLFE-----E 293 (315)
T ss_pred cccccccCCCeeeeEEEeHHHHHHHHhh-ccccCeeee-cCC----cccCCC-CeecCchHHHHHHHHHHHhhc-----c
Confidence 5677899999999999999999999987 678899988 877 999873 478899999999999999997 4
Q ss_pred cccceeeeccceeeeeeccCCC
Q 002963 602 CYKGVEDDLDTFMVYNERRRVT 623 (862)
Q Consensus 602 ~~k~~f~~~~Rf~~fsPvKN~~ 623 (862)
..+||+++++||.||||+||++
T Consensus 294 ~~~~~~~~~~r~~~fsP~KN~~ 315 (315)
T cd06424 294 DYRVGFTVLDRWLCFSPVKNNL 315 (315)
T ss_pred cceeEEEEEchhhcccccCCCC
Confidence 6799999999999999999963
No 5
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.7e-77 Score=662.92 Aligned_cols=438 Identities=19% Similarity=0.227 Sum_probs=368.3
Q ss_pred cHHHHHHHHHHcCCccccccCCccchhhhhhhhHHHHHHHHHhhhhccccCCCcccchhhcchhhHHHHHHHHHHHHHHh
Q 002963 135 DQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIE 214 (862)
Q Consensus 135 ~~~~L~~~L~~~gQeHll~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~Ll~qL~~ld 214 (862)
++..+.+.|.++||+|||.+|+ | |+++ ++..|++||+.++
T Consensus 2 ~~~~~~~~l~~~Gq~~l~~~w~---e----------------------------------L~~~---~~~~l~~~ie~l~ 41 (477)
T KOG2388|consen 2 DRTKLHLILLEAGQSHLFTQWP---E----------------------------------LSEA---DKESLLDQIEVLN 41 (477)
T ss_pred chhHHHHHHHHcChHhHhhhch---h----------------------------------cCHH---HHHHHHHHHHhhc
Confidence 5678899999999999999954 4 7666 6779999999999
Q ss_pred ccccCcChHHHHHHHHHHHHhcccccccccccccccccccccccc-ccCCCCcccC--C-ChHHHHHHHHHhhhccC--c
Q 002963 215 QFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLE-IHVPSGLDLS--Q-NTEYAAQAALWGIEGLP--E 288 (862)
Q Consensus 215 ~~y~~~ggl~~Y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~d~-~~vP~g~~l~--~-~~~~~~~~e~~G~e~L~--k 288 (862)
..+ ++|+.. .+|.+.. + +-.. -++|+..... . .....++++..|++.|+ +
T Consensus 42 l~~--~~~~~~--~~a~~~~--~------------------~~~~~~p~p~~~~~~~~~~~~~d~d~~~~~G~~~i~~~~ 97 (477)
T KOG2388|consen 42 LSR--IHGLQR--ISANEDS--K------------------PVGEIRPVPESKSWPLKERGLDDVDQWWKEGLRLIAEGK 97 (477)
T ss_pred ccc--cchhhh--cChhhcc--C------------------cccccCCCCccccceecccCchhhhHHHhcChhhhhcCc
Confidence 977 577665 3444333 1 0112 2555543321 1 22344447788999997 8
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHHH
Q 002963 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (862)
Q Consensus 289 vAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~ 368 (862)
+|++++|||||||||+++||+ |+|++++ +|+||||+++|+|+++|++|.+..+.++.||||||||+ .|++.|++
T Consensus 98 ~a~~llaGgqgtRLg~~~pkg--~~~~G~~--~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~--~T~e~T~~ 171 (477)
T KOG2388|consen 98 VAVVLLAGGQGTRLGSSGPKG--CYPIGLP--SGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSA--FTHEATLE 171 (477)
T ss_pred ceEEEeccCceeeeccCCCcc--eeecCCc--cccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCC--CccHHhHh
Confidence 999999999999999999999 9999998 89999999999999999999888877799999999999 79999999
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCc
Q 002963 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (862)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN~ 448 (862)
||+.|+||||+++||+||+|+++||++ .+|+++++.+.+++++|+|||++|+|+.++ |++|.++|++|+|||||||+
T Consensus 172 ~f~~~~~FGl~~~qv~~f~Q~~l~c~~-~~gk~~le~k~~~a~ap~gngg~y~ai~~~--l~dm~~rgi~~~hiy~Vdnv 248 (477)
T KOG2388|consen 172 YFESHKYFGLKPEQVTFFQQGKLPCLD-LDGKFILEQKNSLAAAPDGNGGLYRAIKDQ--LEDMAARGIFYDHIYCVDNV 248 (477)
T ss_pred HHhhcCCCCCChhHeeeeecccccccc-cCCceeccCccchhcCCCCCcHHHHHHHhh--hhHHHhhcccEEEEEEecce
Confidence 999999999999999999999999999 678899999999999999999999999999 99999999999999999999
Q ss_pred cccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCC-CccccceEEEEecccCccCCCCCCCCCCCcc
Q 002963 449 VAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLD-GKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (862)
Q Consensus 449 La~v-DP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~d-Gk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (862)
|+++ || +|+|||+.++++++.++ |+|.++.|.||++|. .+ |. ++||||+|++++. +.....||..+
T Consensus 249 L~k~aDP---~fiG~~it~~~d~~~k~-V~k~~p~E~vG~~~~---~~~G~----~~vvEYsEi~~~~-a~~~~~d~g~l 316 (477)
T KOG2388|consen 249 LLKVADP---VFIGFSITKEADVAAKV-VPKINPGEVVGIVAL---KGQGT----PLVVEYSELDAEL-AKAKAPDGGRL 316 (477)
T ss_pred eeEeccc---ceeeEEeechhhHhhhh-ccccCCCCceEEEEe---cCCCc----eeEEEecccCHHH-HhhcccccCcc
Confidence 9998 99 55999999999999997 888889999999998 45 87 9999999999997 66667774333
Q ss_pred ccCccceeeeEEeHHHHHhhhcccccCCccccccccCCCceeecCCCCcc---ccCcceeccchhhhhhhcccccccccc
Q 002963 527 ADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTH---SVPGGRLECTMQNIADNFLNTYSSRCY 603 (862)
Q Consensus 527 S~F~~Ninn~~fsL~~l~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~---~~~~~rLE~~Mqd~~~~F~~~y~~~~~ 603 (862)
..+++|||||||+++||+++... ....+|+|+|. |||||+|.+|... .++++++|.|+ |++|+ -..
T Consensus 317 ~~~agnI~nh~ft~dFLkk~~~~-~~~~lp~H~a~--kKip~~~~~g~~~kP~kpnGik~E~fi---fdvf~-----~~k 385 (477)
T KOG2388|consen 317 LFNAGNICNHFFTLDFLKKVTRA-SVPLLPYHKAE--KKIPYVDSTGKLVKPTKPNGIKLEQFI---FDVFP-----SAK 385 (477)
T ss_pred ccCCccHHHHHHhhHHHHHhhhc-ccccchhhhhh--ccccccccCCcccCCCCCCceeEEeee---eeecc-----ccc
Confidence 34556999999999999999875 56678999999 9999999876543 35789999885 55665 236
Q ss_pred cceeeeccceeeeeeccCCCchhhhhccccCCCCCCChhhHHHHHHHHHHHHHHHCCcccCCcccCCcccccCCCeEEEe
Q 002963 604 KGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILL 683 (862)
Q Consensus 604 k~~f~~~~Rf~~fsPvKN~~~sa~k~~~~~~~~~~dsp~ta~~dl~~~~~~~L~~aG~~vp~~~~~~~~~~~gP~~~I~L 683 (862)
+++.-.++|..+|+|+||...+. .|||+||+.++++.|..|+..+|+.+-+. ...++++|- |.+
T Consensus 386 ~f~~meV~Re~efSPlKng~~~~-----------~D~p~T~~~~~l~~h~~wi~~~g~~f~~~---~~~~evs~~--vsy 449 (477)
T KOG2388|consen 386 KFGLMEVPREEEFSPLKNGGKSS-----------TDNPSTARIALLRLHIRWIEKAGGIFSDA---EAVVEVSPL--VSY 449 (477)
T ss_pred ceeEEecchhhhcCccccCCCCC-----------CCChhHHHHHHHHhhhhehhccCcEEecC---cceEEecce--eee
Confidence 77788888999999999977552 47999999999999999999999988543 233556773 554
Q ss_pred c
Q 002963 684 H 684 (862)
Q Consensus 684 ~ 684 (862)
.
T Consensus 450 ~ 450 (477)
T KOG2388|consen 450 A 450 (477)
T ss_pred c
Confidence 4
No 6
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=100.00 E-value=3.3e-75 Score=655.34 Aligned_cols=364 Identities=19% Similarity=0.210 Sum_probs=314.6
Q ss_pred hhccCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCc
Q 002963 283 IEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 362 (862)
Q Consensus 283 ~e~L~kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~T 362 (862)
.++|+|+|||+|||||||||||++||| +|||. +|+||||++++||++++ +.|| +.||||||||+ +|
T Consensus 74 ~~~L~k~avlkLnGGlGTrmG~~~PKs--~i~v~----~~~sfldl~~~qi~~l~----~~~g--~~vPl~iMtS~--~T 139 (469)
T PLN02474 74 KKLLDKLVVLKLNGGLGTTMGCTGPKS--VIEVR----NGLTFLDLIVIQIENLN----KKYG--CNVPLLLMNSF--NT 139 (469)
T ss_pred HHHHhcEEEEEecCCcccccCCCCCce--eEEcC----CCCcHHHHHHHHHHHHH----HHcC--CCceEEEECCC--ch
Confidence 457899999999999999999999999 99986 99999999999999998 5778 89999999999 79
Q ss_pred hHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCC---CccccCCCCcHHHHHHHhcCchHHHHHcCceE
Q 002963 363 HERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPF---APVCKPGGHGAIWKLAHDKGIFKWFHDNGRKG 439 (862)
Q Consensus 363 he~T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~---~i~~~P~GHGdIy~aL~~sGlLd~l~~~Giky 439 (862)
|++|++||++|+||+ .+|++|+|+++||++ .+|+++++.+. +.+|+|+||||+|.+|++||+||+|+++|+||
T Consensus 140 ~~~T~~~l~k~~~~~---~~i~~F~Q~~~P~l~-~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~ey 215 (469)
T PLN02474 140 HDDTQKIVEKYTNSN---IEIHTFNQSQYPRVV-ADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEY 215 (469)
T ss_pred hHHHHHHHHHcCCCc---cceEEEecCceeeEe-cCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEE
Confidence 999999999999984 589999999999999 67888887655 55699999999999999999999999999999
Q ss_pred EEEEeCCCccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCC
Q 002963 440 ATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGP 519 (862)
Q Consensus 440 i~V~qvDN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~ 519 (862)
+||+||||+++.+||.| +||++.++++|.+++ ++|+.+++++|+||. .||+ +++|||+|+|++...+
T Consensus 216 ifv~nvDNLga~vDp~~---lg~~~~~~~e~~~ev-~~Kt~~d~kgG~l~~---~dgk----~~lvEysqvp~e~~~~-- 282 (469)
T PLN02474 216 VFIANSDNLGAIVDLKI---LNHLIQNKNEYCMEV-TPKTLADVKGGTLIS---YEGK----VQLLEIAQVPDEHVNE-- 282 (469)
T ss_pred EEEEecCccccccCHHH---HHHHHhcCCceEEEE-eecCCCCCCccEEEE---ECCE----EEEEEEecCCHHHHHh--
Confidence 99999999777779965 899999999999997 888899999999997 8999 9999999999986321
Q ss_pred CCCCCccccCcc-ceeeeEEeHHHHHhhhcccccCCcccc-ccccCCCceeecCCCCccccCcceeccchhhhhhhcccc
Q 002963 520 FSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGM-VLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNT 597 (862)
Q Consensus 520 ~~dg~l~S~F~~-Ninn~~fsL~~l~~vl~~~~~~~Lp~h-IanpKKkIpy~D~~g~~~~~~~~rLE~~Mqd~~~~F~~~ 597 (862)
.++. ..|++ |||||||+|+||+++++. +.||+| |.||| ++| | .+..|||++|+|++..|++
T Consensus 283 -f~~~--~kf~~fNtnn~w~~L~~l~~~~~~---~~l~~~~I~n~k----~~~--g----~kv~q~Et~ig~ai~~f~~- 345 (469)
T PLN02474 283 -FKSI--EKFKIFNTNNLWVNLKAIKRLVEA---DALKMEIIPNPK----EVD--G----VKVLQLETAAGAAIRFFDN- 345 (469)
T ss_pred -hccc--ccceeeeeeeEEEEHHHHHHHhhc---CCCCceeecCCC----CCC--C----eeEEEeHHHHHHHHHhCCC-
Confidence 1233 35998 999999999999999863 456664 45666 454 3 3689999999999999863
Q ss_pred cccccccceeeeccceeeeeeccCCCchhhhhccccCCCCCCChhhHHHHHHHHHHHHHHHCCcccCCcccCCcccccCC
Q 002963 598 YSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGP 677 (862)
Q Consensus 598 y~~~~~k~~f~~~~Rf~~fsPvKN~~~sa~k~~~~~~~~~~dsp~ta~~dl~~~~~~~L~~aG~~vp~~~~~~~~~~~gP 677 (862)
+ ...+++|.- |+||||.. ++.+++.|+|..+..|+..+|.+.- ...|
T Consensus 346 ----~---~~v~VpR~r-F~PVK~~~----------------dll~~rsdly~l~~~~l~~~~~~~~---------~~~p 392 (469)
T PLN02474 346 ----A---IGINVPRSR-FLPVKATS----------------DLLLVQSDLYTLVDGFVIRNKARTN---------PSNP 392 (469)
T ss_pred ----c---eEEEEchhh-ccCCCCCC----------------CHHHHHHHHHHhccCeEEecCcccC---------CCCC
Confidence 2 234566653 79999954 5789999999999999998877532 1246
Q ss_pred CeEEEecCCccccHHHHhhhcCC-CCCCCCcEEEEEEceEEEee---eeeeEEEEecc
Q 002963 678 PYLILLHPALGLLWEVTRQKFKG-GSVSKGSELQIEVAEFLWRN---LDGSLIIVAEN 731 (862)
Q Consensus 678 ~~~I~L~P~~~~~~~~~~~k~~g-gsIs~~S~L~veG~dv~~~~---ldGslvI~a~~ 731 (862)
.|.|+|. +.+++++.+||++ +||.++++|+|+|+ |.|+. |.|+++|.|..
T Consensus 393 --~IeL~~~-f~~v~~f~~rf~~iPsl~~~d~LtV~Gd-v~fG~~v~l~G~v~i~~~~ 446 (469)
T PLN02474 393 --SIELGPE-FKKVANFLSRFKSIPSIVELDSLKVSGD-VWFGSGIVLKGKVTITAKS 446 (469)
T ss_pred --cEEECcc-cccHHhHHHhcCCCCCcccCCeEEEeee-eEECCCcEEEEEEEEEcCC
Confidence 4999999 8899999999997 59999999999995 66666 99999999984
No 7
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=100.00 E-value=2.3e-72 Score=629.35 Aligned_cols=404 Identities=21% Similarity=0.235 Sum_probs=303.3
Q ss_pred hHHHHHHHHHHHHhccccccccccccccccccccccccc-cCCCCcccCCChHHHHH-HHHHhhhccCcEEEEEecCCcc
Q 002963 222 GIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-HVPSGLDLSQNTEYAAQ-AALWGIEGLPELGEIYPLGGSA 299 (862)
Q Consensus 222 gl~~Y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~d~~-~vP~g~~l~~~~~~~~~-~e~~G~e~L~kvAvVlLAGGlG 299 (862)
++..|+..+.+++.++.. .. ..|+.+ ++++....++++..... .+..+...++|+|||+||||||
T Consensus 1 e~~~f~~l~~~yl~~~~~--~~-----------~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~kvavl~LaGGlG 67 (420)
T PF01704_consen 1 ELDSFFSLFRRYLSESKS--HQ-----------IDWDKIMPPPPEEVVDYESLKEYEWDEGLEAIALGKVAVLKLAGGLG 67 (420)
T ss_dssp HHHHHHHHHHHHHHCCCC--CS-------------GGGEEE-GTGCEEEHHHHHHSCHHHHHHHHHTTCEEEEEEEESBS
T ss_pred ChHHHHHHHHHHHHhccc--CC-----------cccccCCCCChhhcCChhHhcccccccchhHHhhCCEEEEEEcCccc
Confidence 357799999999998321 11 145665 33334434443322211 2345667778999999999999
Q ss_pred ccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHHHHHHHhCCCCCC
Q 002963 300 DRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRG 379 (862)
Q Consensus 300 TRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~fle~n~yFGl~ 379 (862)
||||+++||| ++||. +|+||||++++||++++ ++|| +.||||||||+ +||++|++||++ |||++
T Consensus 68 TrlG~~~pK~--~~~v~----~~~t~ldl~~~qi~~l~----~~~~--~~iPl~iMtS~--~T~~~T~~~l~k--yfg~~ 131 (420)
T PF01704_consen 68 TRLGCSGPKG--LIPVR----EGKTFLDLIVEQIEALN----KKYG--VDIPLYIMTSF--NTHEDTRKFLEK--YFGLD 131 (420)
T ss_dssp GCCTESSBGG--GSEEE----TTEEHHHHHHHHHHHHH----HHHT--TT-EEEEEEET--TTHHHHHHHHHH--GCGSS
T ss_pred CccCCCCCCc--ceecC----CcccHHHHHHHHHHHHh----cccc--ccceEEEecCc--ccHHHHHHHHHH--hcCCC
Confidence 9999999999 99997 99999999999999998 5677 89999999999 799999999999 99998
Q ss_pred CCceEEEecCCeeeEecCCCcccccCCC-----CccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCccccc-c
Q 002963 380 QSSFQLFEQPLVPAVDAEDGQWLVMRPF-----APVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT-D 453 (862)
Q Consensus 380 ~~qV~~F~Q~~vP~v~~~dgki~l~~~~-----~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN~La~v-D 453 (862)
.+ |++|+|+++||++ .+|+++++.+. ...|+|+||||||.||++||+||+|+++|++|+||+|||| |+++ |
T Consensus 132 ~~-v~~F~Q~~~P~i~-~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDN-L~a~~D 208 (420)
T PF01704_consen 132 VD-VFFFKQSKLPAID-ADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDN-LGAVVD 208 (420)
T ss_dssp CC-EEEEEE-EEEEEE-TTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTB-TT-TT-
T ss_pred cc-eEEEeecCcceEe-CCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCC-cccccC
Confidence 88 9999999999999 67888887654 2359999999999999999999999999999999999999 6654 9
Q ss_pred HhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccccCcc-c
Q 002963 454 LTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-N 532 (862)
Q Consensus 454 P~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S~F~~-N 532 (862)
|.| +||++.++++|+++| ++|+.++|++|+||+ .||+ +++|||+|+|++..++.+..++ |.. |
T Consensus 209 p~~---lG~~~~~~~~~~~ev-v~Kt~~dek~Gvl~~---~~G~----~~vvEysqip~~~~~~~~~~~~-----~~~Fn 272 (420)
T PF01704_consen 209 PVF---LGYMIEKNADFGMEV-VPKTSPDEKGGVLCR---YDGK----LQVVEYSQIPKEHMAEFKDIKG-----FLLFN 272 (420)
T ss_dssp HHH---HHHHHHTT-SEEEEE-EE-CSTTTSSEEEEE---ETTE----EEEEEGGGS-HHGHHHHTSTTT-----SBEEE
T ss_pred HHH---HHHHHhccchhheee-eecCCCCCceeEEEE---eCCc----cEEEEeccCCHHHHHhhhcccc-----ceEEE
Confidence 955 899999999999997 777889999999998 7999 9999999999985333223322 554 9
Q ss_pred eeeeEEeHHHHHhhhcccccCCccccccccCCCceeecCCCCccccCcceeccchhhhhhhcccccccccccceeeeccc
Q 002963 533 TNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDT 612 (862)
Q Consensus 533 inn~~fsL~~l~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~~~~~~rLE~~Mqd~~~~F~~~y~~~~~k~~f~~~~R 612 (862)
|||+||+|++|+++++. ....||+|++. |||||+|.. ++.+|||++|++.+..|.+ .+ ..+++|
T Consensus 273 tnNi~~~l~~l~~~~~~-~~~~Lp~h~a~--Kki~~~d~~-----~~~~q~Et~i~~~i~~f~~-------~~-~v~V~R 336 (420)
T PF01704_consen 273 TNNIWFSLDFLKRLLER-DELQLPIHVAK--KKIPYVDNG-----IKVIQFETAIGFAIFQFDN-------SF-AVEVPR 336 (420)
T ss_dssp EEEEEEEHHHHHHHHHT-TTCCS-EEEEE--EESSEECTE-----EEEEEEECGGGGGGGGCTS-------EE-EEEE-G
T ss_pred eceeeEEHHHHHHHHHh-ccccCccEEcc--hhcccccCC-----ccEEeehhhhhchHhhccC-------cE-EEEEcH
Confidence 99999999999999986 56789999998 999999932 4789999999998888752 12 346788
Q ss_pred eeeeeeccCCCchhhhhccccCCCCCCChhhHHHHHHHHHHHHHHHCCcccCCcccCCcccccC-CCeEEEecCCccccH
Q 002963 613 FMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDG-PPYLILLHPALGLLW 691 (862)
Q Consensus 613 f~~fsPvKN~~~sa~k~~~~~~~~~~dsp~ta~~dl~~~~~~~L~~aG~~vp~~~~~~~~~~~g-P~~~I~L~P~~~~~~ 691 (862)
..|+||||+. +. .++++.-+.+.+....-...... ..++|.|++. +.++
T Consensus 337 -~rF~PvKn~~-dL---------------------------l~~~Sd~y~~~~~~~~~~~~~~~~~~p~i~lg~~-f~~v 386 (420)
T PF01704_consen 337 -DRFAPVKNTS-DL---------------------------LLVRSDLYDLDDGTLVRNPLRAFHTRPLIKLGDH-FKKV 386 (420)
T ss_dssp -GG--B-SSHH-HH---------------------------HHHHSTTEEEETTEEEEHCCHCSSCHHEEEECGG-GSSH
T ss_pred -HHcCCccccC-cc---------------------------eeeccceeccccceeeecccccCCCCCeeccCcc-cCch
Confidence 8889999943 21 22333323332111000011112 2337999987 5899
Q ss_pred HHHhhhcCC-CCCCCCcEEEEEEceEEEee
Q 002963 692 EVTRQKFKG-GSVSKGSELQIEVAEFLWRN 720 (862)
Q Consensus 692 ~~~~~k~~g-gsIs~~S~L~veG~dv~~~~ 720 (862)
+++.+||+. +||.++.+|+|.|+ |+|+.
T Consensus 387 ~~~~~r~~~ip~l~~~~~l~v~gd-v~fg~ 415 (420)
T PF01704_consen 387 DDFEKRFPSIPSLLELDSLTVSGD-VTFGK 415 (420)
T ss_dssp HHHHHHBSSS-BETTEEEEEEESS-EEE-T
T ss_pred HHhhhhcCCCCCcccCCcceEecc-eEECC
Confidence 999999998 69999999999995 66664
No 8
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=100.00 E-value=1.1e-71 Score=606.80 Aligned_cols=315 Identities=23% Similarity=0.313 Sum_probs=285.5
Q ss_pred HHHHHhhhccC--cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEE
Q 002963 277 QAALWGIEGLP--ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAI 354 (862)
Q Consensus 277 ~~e~~G~e~L~--kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~I 354 (862)
++++.|+++|+ ++|+|+||||+|||||+++||+ ++||+.+ +|+||||+++++|++++.++.+.+|+++.|||+|
T Consensus 2 ~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~--l~pv~~~--~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~i 77 (323)
T cd04193 2 EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKG--MFPVGLP--SKKSLFQLQAERILKLQELAGEASGKKVPIPWYI 77 (323)
T ss_pred hHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeE--EEEecCC--CCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEE
Confidence 46689999998 9999999999999999999999 9999976 9999999999999999999988888889999999
Q ss_pred ecCCCCCchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHH
Q 002963 355 MTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHD 434 (862)
Q Consensus 355 MTS~~k~The~T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~ 434 (862)
|||+ +||+.|++||++|+|||+++++|++|+|+++||++ .||+++++++++++|+|+||||+|.+|++||+|++|++
T Consensus 78 mtS~--~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~-~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~ 154 (323)
T cd04193 78 MTSE--ATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVD-FDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKK 154 (323)
T ss_pred EcCh--hHhHHHHHHHHhCCcCCCCCceEEEEecCceeeEc-CCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHh
Confidence 9998 69999999999999999999999999999999998 78999999999999999999999999999999999999
Q ss_pred cCceEEEEEeCCCccccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCcc
Q 002963 435 NGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKF 513 (862)
Q Consensus 435 ~Gikyi~V~qvDN~La~v-DP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~ 513 (862)
+|+||++|+||||+|+++ ||.| +|+++.++++|++++ ++|+.++|+||++|. .||+ +++|||+|+|++
T Consensus 155 ~G~~yi~v~~vDN~L~~~~Dp~~---lG~~~~~~~~~~~kv-v~k~~~~ekvG~l~~---~~g~----~~vvEysel~~~ 223 (323)
T cd04193 155 RGIKYIHVYSVDNILVKVADPVF---IGFCISKGADVGAKV-VRKRYPTEKVGVVVL---VDGK----PQVVEYSEISDE 223 (323)
T ss_pred CCCEEEEEEecCcccccccCHHH---hHHHHHcCCceEEEE-EECCCCCCceeEEEE---ECCe----EEEEEeecCCHH
Confidence 999999999999999987 9955 899999999999997 777889999999998 6999 999999999999
Q ss_pred CCCCCCCCCCCccccCcc-ceeeeEEeHHHHHhhhcccccCCccccccccCCCceeecCCCCc---cccCcceeccchhh
Q 002963 514 GITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDT---HSVPGGRLECTMQN 589 (862)
Q Consensus 514 ~~~~~~~~dg~l~S~F~~-Ninn~~fsL~~l~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~---~~~~~~rLE~~Mqd 589 (862)
. .+...++|.+. |.. |||+|+|+++||+++++. ....||+|++. |||||+|..|.. ..++++|||+||+|
T Consensus 224 ~-~~~~~~~g~l~--f~~~ni~~~~fsl~fl~~~~~~-~~~~l~~h~a~--Kki~~~d~~~~~~~p~~~n~~klE~fifd 297 (323)
T cd04193 224 L-AEKRDADGELQ--YNAGNIANHFFSLDFLEKAAEM-EEPSLPYHIAK--KKIPYVDLEGGLVKPDEPNGIKLELFIFD 297 (323)
T ss_pred H-HhccCcCCcEe--cccchHhhheeCHHHHHHHHhh-ccccCCceEec--cccCcccCcCcEeccCCCcEEEeHHHHHH
Confidence 7 33445667775 655 999999999999999875 44579999999 999999977543 24568999999999
Q ss_pred hhhhcccccccccccceeeeccceeeeeeccCCC
Q 002963 590 IADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVT 623 (862)
Q Consensus 590 ~~~~F~~~y~~~~~k~~f~~~~Rf~~fsPvKN~~ 623 (862)
++..+. ++...+++|..+|+||||++
T Consensus 298 ~~~~~~--------~~~~~eV~R~~~F~PvKn~~ 323 (323)
T cd04193 298 VFPFAK--------NFVCLEVDREEEFSPLKNAD 323 (323)
T ss_pred HHHhCC--------ceEEEEEChhhccccCcCCC
Confidence 887653 55678889999999999964
No 9
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=100.00 E-value=4.1e-68 Score=572.08 Aligned_cols=284 Identities=20% Similarity=0.234 Sum_probs=250.2
Q ss_pred cCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHH
Q 002963 286 LPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (862)
Q Consensus 286 L~kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~ 365 (862)
|+|+|||+||||||||||+++||| ++||. +|+||||++++||++++ +.+| +.||||||||+ +||++
T Consensus 1 l~kvavl~LaGG~GTRLG~~~pKg--~~~v~----~~~s~l~l~~~~i~~l~----~~~~--~~iPl~iMtS~--~T~~~ 66 (300)
T cd00897 1 LNKLVVLKLNGGLGTSMGCTGPKS--LIEVR----DGKTFLDLTVQQIEHLN----KTYG--VDVPLVLMNSF--NTDED 66 (300)
T ss_pred CCcEEEEEecCCcccccCCCCCce--eeecC----CCCcHHHHHHHHHHHHH----HHcC--CCceEEEECCC--cchHH
Confidence 579999999999999999999999 99995 99999999999999999 4677 89999999999 79999
Q ss_pred HHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCccccc---CCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEE
Q 002963 366 ITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVM---RPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATV 442 (862)
Q Consensus 366 T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~---~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V 442 (862)
|++||++|++ .++||++|+|+++||++ .+|+++++ ++++++|+|+||||+|.||++||+|++|+++|+||++|
T Consensus 67 T~~~l~~~~~---~~~~v~~F~Q~~~P~~~-~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v 142 (300)
T cd00897 67 TKKILKKYAG---VNVDIHTFNQSRYPRIS-KETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFV 142 (300)
T ss_pred HHHHHHHcCC---CccCeEEEecCCcccCc-cccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEE
Confidence 9999999886 78999999999999999 67888887 88999999999999999999999999999999999999
Q ss_pred EeCCCccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCC
Q 002963 443 RQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 522 (862)
Q Consensus 443 ~qvDN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~d 522 (862)
+||||+++.+||.| +||++.++++|+++| ++|+.++|+||++|. .||+ +++|||+|+|++...+. +
T Consensus 143 ~nvDNL~a~~Dp~~---lg~~~~~~~~~~~ev-v~Kt~~dek~G~l~~---~~g~----~~vvEyse~p~e~~~~~---~ 208 (300)
T cd00897 143 SNIDNLGATVDLRI---LNHMVDNKAEYIMEV-TDKTRADVKGGTLIQ---YEGK----LRLLEIAQVPKEHVDEF---K 208 (300)
T ss_pred EecccccccCCHHH---HHHHHhcCCceEEEE-eecCCCCCcccEEEE---ECCE----EEEEEeccCCHHHHHhh---c
Confidence 99999666569955 899999999999997 888999999999997 7999 99999999999863221 1
Q ss_pred CCccccCcc-ceeeeEEeHHHHHhhhcccccCCccccccccCCCceeecCCCCccccCcceeccchhhhhhhcccccccc
Q 002963 523 NGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSR 601 (862)
Q Consensus 523 g~l~S~F~~-Ninn~~fsL~~l~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~~~~~~rLE~~Mqd~~~~F~~~y~~~ 601 (862)
+.+ .|+. |||||||+++||+++++. ....||.|++. |+||+ + ++++|||++|+|++..|+
T Consensus 209 ~~~--~~~~~nt~n~~~~l~~L~~~~~~-~~~~lp~h~~~--K~v~p---~-----~~~~qlE~~i~da~~~~~------ 269 (300)
T cd00897 209 SIK--KFKIFNTNNLWVNLKAVKRVVEE-NALDLEIIVNP--KTVDG---G-----LNVIQLETAVGAAIKNFD------ 269 (300)
T ss_pred Ccc--cceEEEEeEEEEEHHHHHHHHHh-ccCCCCeeecc--cccCC---C-----CCEEEeHhHhhhHHHhCC------
Confidence 333 4887 999999999999999864 44569999987 77752 1 579999999999888875
Q ss_pred cccceeeeccceeeeeeccCCC
Q 002963 602 CYKGVEDDLDTFMVYNERRRVT 623 (862)
Q Consensus 602 ~~k~~f~~~~Rf~~fsPvKN~~ 623 (862)
++.+.+++|. .|+||||..
T Consensus 270 --~~~~~eV~R~-rF~PvKn~~ 288 (300)
T cd00897 270 --NALGVNVPRS-RFLPVKTTS 288 (300)
T ss_pred --CcEEEEEChh-hcCCCCChH
Confidence 2234667776 489999954
No 10
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-63 Score=536.46 Aligned_cols=439 Identities=21% Similarity=0.245 Sum_probs=350.9
Q ss_pred hhhhhhhHHHHHHHHHhhhhccccCCCcccchhhcchhhHHHHHHHHHHHHHHhccccCcChHHHHHHHHHHHHhccccc
Q 002963 161 SEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFE 240 (862)
Q Consensus 161 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~Ll~qL~~ld~~y~~~ggl~~Y~~~a~~ll~~s~~~ 240 (862)
..+.|+||++|.+|+++.+. ++++.|-.++ ..|+....++|.+...
T Consensus 25 ~~~~s~mk~~l~~l~~~~~~--------------------~~k~~~~~e~-------------~~F~~Lf~RyL~~~~~- 70 (498)
T KOG2638|consen 25 DEALSQMKNELDKLLSTSEP--------------------EDKNHFKTEL-------------SGFFNLFSRYLREKAP- 70 (498)
T ss_pred HHHHHHHHHHHHhccccCch--------------------hhhhcchhhH-------------HHHHHHHHHHHhccCC-
Confidence 36789999999999999761 2566655433 3455677888877531
Q ss_pred cccccccccccccccccccc-cCCCCcccCCChHHHHHHHHHhhhccCcEEEEEecCCccccCCCCCCCCCceeeccccC
Q 002963 241 RKTTKSQHVHESMECQFLEI-HVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLP 319 (862)
Q Consensus 241 ~~~~~~~~~~~~~~~~~d~~-~vP~g~~l~~~~~~~~~~e~~G~e~L~kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p 319 (862)
. ..|+.+ ++|++....|++-... ..+.+.|.|+|||+|+||+||.|||.+||+ +++|+
T Consensus 71 -~------------~~wdkI~~p~~d~vv~y~~i~~~---~~~~~~L~KLavlKLNGGlGttmGc~gPKS--~ieVR--- 129 (498)
T KOG2638|consen 71 -T------------IDWDKIRPPPEDAVVPYDDIKNV---ELSKSLLNKLAVLKLNGGLGTTMGCKGPKS--VIEVR--- 129 (498)
T ss_pred -c------------cchhhccCCChhhccccccccch---hhHHHhhhheEEEEecCCcCCccccCCCce--eEEEc---
Confidence 1 346777 5566666666553222 467788999999999999999999999999 99999
Q ss_pred CCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCC
Q 002963 320 YCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDG 399 (862)
Q Consensus 320 ~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dg 399 (862)
+|.||||+.++||+.|+ ++|+ +++||++|||+ +|+++|.+++++|.++ +.+|+.|.|+++|.++.+..
T Consensus 130 -~g~tFLDL~V~QIe~LN----~~Y~--~dVPlvLMNSf--nTdedT~kil~ky~~~---kv~i~TF~QS~~PRi~~etl 197 (498)
T KOG2638|consen 130 -DGLTFLDLTVRQIENLN----KTYN--VDVPLVLMNSF--NTDEDTQKILKKYAGS---KVDIKTFNQSKYPRIDKETL 197 (498)
T ss_pred -CCCchhHHHHHHHHHHH----hhcC--CCCCEEEeccc--ccchHHHHHHHHhcCC---ceeEEEeccccCCccccccc
Confidence 99999999999999999 7898 89999999999 8999999999999886 56899999999999996544
Q ss_pred ccccc---CCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCccccccHhHHHHhhhhhhcCCceeEEEee
Q 002963 400 QWLVM---RPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCK 476 (862)
Q Consensus 400 ki~l~---~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN~La~vDP~il~flG~~~~~~~~~~~~~vv 476 (862)
-++.. +...-+|+|+||||+|.+|+.||+||+|+++|++|+||+|+||++|.+|..| +.+.+..+.+|.|++ +
T Consensus 198 LPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~I---Ln~~i~~~~ey~MEv-T 273 (498)
T KOG2638|consen 198 LPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLNI---LNHVINNNIEYLMEV-T 273 (498)
T ss_pred cCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHHH---HHHHhcCCCceEEEe-c
Confidence 33332 3456899999999999999999999999999999999999999999999988 689999999999997 8
Q ss_pred ecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccccCcc-ceeeeEEeHHHHHhhhcccccCCc
Q 002963 477 RSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSL 555 (862)
Q Consensus 477 RK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S~F~~-Ninn~~fsL~~l~~vl~~~~~~~L 555 (862)
.|+.++.|+|+|+. ++|+ ++++||+|+|+++ .+++...+.|.. ||||+|++|+++++++++ ..-.+
T Consensus 274 dKT~aDvKgGtLi~---y~G~----lrlLEiaQVP~eh-----v~eFkS~kkFkifNTNNlWinLkavKrlve~-~~l~m 340 (498)
T KOG2638|consen 274 DKTRADVKGGTLIQ---YEGK----LRLLEIAQVPKEH-----VDEFKSIKKFKIFNTNNLWINLKAVKKLVEE-NALNM 340 (498)
T ss_pred ccchhhcccceEEe---ecCE----EEEEEeccCChhH-----hhhhccceeEEEeccCCeEEehHHHHHHhhc-Ccccc
Confidence 88999999999998 8999 9999999999997 346677789998 999999999999999986 34444
Q ss_pred cccccccCCCceeecCCCCccccCcceeccchhhhhhhcccccccccccceeeeccceeeeeeccCCCchhhhhccccCC
Q 002963 556 PGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADM 635 (862)
Q Consensus 556 p~hIanpKKkIpy~D~~g~~~~~~~~rLE~~Mqd~~~~F~~~y~~~~~k~~f~~~~Rf~~fsPvKN~~~sa~k~~~~~~~ 635 (862)
+.|.|+| ++|.. ..+.|||++.+++++.|++ +..+-+.++|| -|||+.. +.
T Consensus 341 -eIi~N~k----ti~~~-----~~viQleTa~GaaIk~F~n------a~gv~VpRsRF---lPVKt~s-DL--------- 391 (498)
T KOG2638|consen 341 -EIIVNPK----TIDRG-----IEVIQLETAAGAAIKFFDN------AIGVNVPRSRF---LPVKTCS-DL--------- 391 (498)
T ss_pred -eeecChh----hccCC-----ceEEEEhhhhhHHHHhCCC------ceeeecccccc---ccccccc-cc---------
Confidence 4777977 66642 3689999999999999984 12224567788 7999943 21
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHCCcccCCcccCCcccccC-CCeEEEecCCccccHHHHhhhcCC-CCCCCCcEEEEEE
Q 002963 636 SLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDG-PPYLILLHPALGLLWEVTRQKFKG-GSVSKGSELQIEV 713 (862)
Q Consensus 636 ~~~dsp~ta~~dl~~~~~~~L~~aG~~vp~~~~~~~~~~~g-P~~~I~L~P~~~~~~~~~~~k~~g-gsIs~~S~L~veG 713 (862)
+.++++.+.+- .--+++. ..+.+ |+++|.|.++ +.+++++..||++ .+|.+..+|+|.|
T Consensus 392 ----------lLv~S~Ly~ld-~Gsl~l~-------~~r~~~t~P~vkLg~~-F~kv~~f~~rfp~iP~ileLdhLtVsG 452 (498)
T KOG2638|consen 392 ----------LLVMSNLYDLD-NGSLTLS-------PSRFGPTPPLVKLGSE-FKKVEDFLGRFPGIPDILELDHLTVSG 452 (498)
T ss_pred ----------eeeecceeecc-CCeEEec-------hhhcCCCCCeeecchh-hhHHHHHHhcCCCCCccceeceEEEec
Confidence 11111111111 1011121 11222 3448999999 8899999999999 6899999999999
Q ss_pred ceEEEee--eeeeEEEEecc
Q 002963 714 AEFLWRN--LDGSLIIVAEN 731 (862)
Q Consensus 714 ~dv~~~~--ldGslvI~a~~ 731 (862)
+.++.++ |.|+++|.|++
T Consensus 453 dV~FGknV~LkGtViIia~~ 472 (498)
T KOG2638|consen 453 DVWFGKNVSLKGTVIIIANE 472 (498)
T ss_pred cEEeccceEEeeEEEEEecC
Confidence 6555555 99999999984
No 11
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8e-61 Score=531.66 Aligned_cols=413 Identities=20% Similarity=0.222 Sum_probs=311.9
Q ss_pred cHHHHHHHHHHcCCccccccCCccchhhhhhhhHHHHHHHHHhhhhccccCCCcccchhhcchhhHHHHHHHHHHHHHHh
Q 002963 135 DQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIE 214 (862)
Q Consensus 135 ~~~~L~~~L~~~gQeHll~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~Ll~qL~~ld 214 (862)
+.......|.+..|+|+|.. |+. +++ ++..+..+++..+|
T Consensus 14 ~f~~~~~~l~~~~~~h~l~~---l~~----------------------------------~s~---~~~~~~~~~~~~~d 53 (472)
T COG4284 14 KFNSDAVSLAASQQEHLLDK---LKQ----------------------------------SSE---KQALKSFEKLLLLD 53 (472)
T ss_pred hhhcchhhhhHHHHHHHHHH---hhh----------------------------------hch---HHHHhhhhhhhhhH
Confidence 45556677788888888888 433 333 24556666666777
Q ss_pred ccccCcChHHHHHHHHHHHHhccccccccccccccccccccccccccCCCC-cccCCChHHHHHHHHHhhhc--cCcEEE
Q 002963 215 QFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEIHVPSG-LDLSQNTEYAAQAALWGIEG--LPELGE 291 (862)
Q Consensus 215 ~~y~~~ggl~~Y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~d~~~vP~g-~~l~~~~~~~~~~e~~G~e~--L~kvAv 291 (862)
.+| ...+++|..++. .. .+.|+.+..|.. ....+++ . ..+.||+.. ++|+||
T Consensus 54 ~~f----------~l~~~~ll~~s~--~s----------~~~~~ki~~~~~d~~~~~~~-~--~~~~~~l~~~~~~klAv 108 (472)
T COG4284 54 IFF----------FLFSRYLLNTSK--AS----------TQEWDKIRPPNPDDVVDYEK-K--ILEGWGLLKIKLGKLAV 108 (472)
T ss_pred HHH----------HHHHHHHhhcCc--cc----------ceeecccCCCChhhhccchh-h--ccchhhhhhhhcCceEE
Confidence 755 233444444321 11 123455555552 2222222 1 112346666 779999
Q ss_pred EEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHHHHHH
Q 002963 292 IYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCE 371 (862)
Q Consensus 292 VlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~fle 371 (862)
|+||||||||||+++||| +|+|+ +|+||||+++|||+.++ ++|+ ++||||||||. |++.|..||+
T Consensus 109 l~LaGGqGtrlG~~gPKg--l~~V~----~gks~~dl~~~qIk~ln----~~~~--~~vP~~iMtS~---nt~~t~s~f~ 173 (472)
T COG4284 109 LKLAGGQGTRLGCDGPKG--LFEVK----DGKSLFDLQAEQIKYLN----RQYN--VDVPLYIMTSL---NTEETDSYFK 173 (472)
T ss_pred EEecCCcccccccCCCce--eEEec----CCCcHHHHHHHHHHHHH----HHhC--CCCCEEEEecC---CcHHHHHHHh
Confidence 999999999999999999 99998 99999999999999999 5777 89999999996 9999999999
Q ss_pred HhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCC-ccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCccc
Q 002963 372 RLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFA-PVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVA 450 (862)
Q Consensus 372 ~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~-i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN~La 450 (862)
.++|||+++++|.||+|+.+||+...+|++++.+.++ ++|+|+||||+|.+|+.||++++|.++|++|++|+||||+++
T Consensus 174 ~~~Y~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~ 253 (472)
T COG4284 174 SNDYFGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGA 253 (472)
T ss_pred hhhhcCCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEeccccccc
Confidence 9999999999999999999996666899999986666 999999999999999999999999999999999999999444
Q ss_pred cccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccccCc
Q 002963 451 ATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFP 530 (862)
Q Consensus 451 ~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S~F~ 530 (862)
.+||.| +|+++.++.++.+++ ++|+.|+|+||+|+. +||+ ++++||+|+|.+. .+.-..++.+ ..|.
T Consensus 254 ~vD~~~---lg~~~~~~~e~~~e~-t~Kt~a~ekvG~Lv~---~~g~----~rllEysev~~~~-~~~~~s~~~~-~~~n 320 (472)
T COG4284 254 TVDLKF---LGFMAETNYEYLMET-TDKTKADEKVGILVT---YDGK----LRLLEYSEVPNEH-REEFTSDGKL-KYFN 320 (472)
T ss_pred ccCHHH---HHHHHhcCcceeEEE-eecccccccceEEEE---eCCc----eEEEEEecCChhH-hhhhccccce-eeec
Confidence 459965 899999999999998 888999999999997 8999 9999999999986 2222234433 2345
Q ss_pred cc-eeeeEEeHHHHHhhhcccccCCccccccccCCCceeecC--C-CCccccCcceecc-chhhhhhhcccccccccccc
Q 002963 531 AN-TNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDN--F-GDTHSVPGGRLEC-TMQNIADNFLNTYSSRCYKG 605 (862)
Q Consensus 531 ~N-inn~~fsL~~l~~vl~~~~~~~Lp~hIanpKKkIpy~D~--~-g~~~~~~~~rLE~-~Mqd~~~~F~~~y~~~~~k~ 605 (862)
+| |.+|++.+++|.+.. ...||.|.++ ||||+.|. . .+...+...++|. |+- +|+|. | ...+.+
T Consensus 321 ~Nni~l~~~~~~~l~~~~----~l~Lpi~~a~--Kki~~~~~~~~~~t~i~~~i~kfe~~FI~--fDlF~--~-~s~~~~ 389 (472)
T COG4284 321 TNNIWLHLFSVKFLKEAA----YLNLPIHKAI--KKIPQLDNIIQLTTAIGKNISKFENEFIP--FDLFL--Y-KSDENG 389 (472)
T ss_pred cccceeehhHHHHHHhhh----ccCCcchhhh--cccCccccceeeccccccchhhccccccc--eeeeE--E-EecCCC
Confidence 53 777777777777654 3579999999 99999981 1 1112356678884 641 56665 2 123677
Q ss_pred eeeeccceeeeeeccCCCchhhhhccccCCCCCCChhhHHHHHHHHHHHHHHHCCccc
Q 002963 606 VEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKL 663 (862)
Q Consensus 606 ~f~~~~Rf~~fsPvKN~~~sa~k~~~~~~~~~~dsp~ta~~dl~~~~~~~L~~aG~~v 663 (862)
++..++|+-+|+|+||-.++. -+++.++..++-+.-. |++..+..+
T Consensus 390 ~~~~vpR~~~f~Plkn~~~~~-----------~~~~~~~~~~~~~~~~-~~e~~~~~i 435 (472)
T COG4284 390 GLLLVPRFGEFSPLKNLEGSH-----------FDNVETFTCGIPRIPL-ILELEGLTI 435 (472)
T ss_pred ceEeccccCCCCchhhccCCC-----------CCcHHhhhcccccccc-hhhhcccee
Confidence 788899999999999977663 2366677655444333 555555544
No 12
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=100.00 E-value=1.4e-56 Score=476.81 Aligned_cols=235 Identities=19% Similarity=0.200 Sum_probs=208.8
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHHH
Q 002963 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (862)
Q Consensus 289 vAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~ 368 (862)
+|+|+||||+|||||++.||+ ++||+++ +|+||||+++++|++++.++. .| +.|||+||||+ +||+.|++
T Consensus 1 va~viLaGG~GtRLg~~~PK~--~~~i~~~--~gk~~l~~~~~~i~~~~~~~~--~~--~~Ip~~imts~--~t~~~t~~ 70 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKS--STDVGLP--SGQCFLQLIGEKILTLQEIDL--YS--CKIPEQLMNSK--YTHEKTQC 70 (266)
T ss_pred CEEEEECCCCccccCCCCCce--eeeecCC--CCCcHHHHHHHHHHHHHHHhh--cC--CCCCEEEEcCc--hhHHHHHH
Confidence 689999999999999999999 9999977 999999999999999996552 24 78999999999 79999999
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCc
Q 002963 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (862)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN~ 448 (862)
||++|+ +++++|++|+|+++||++ .+|.+.++++++++|+|+||||||.+|+.+|+|++|+++|++|++|+|+||+
T Consensus 71 ~l~~~~---~~~~~v~~f~Q~~~P~~~-~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~ 146 (266)
T cd04180 71 YFEKIN---QKNSYVITFMQGKLPLKN-DDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNL 146 (266)
T ss_pred HHHHcC---CCCCceEEEEeCCceEEe-CCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCcc
Confidence 999998 568999999999999999 5677788889999999999999999999999999999999999999999999
Q ss_pred cccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCC-CccccceEEEEecccCccCCCC----CCCCC
Q 002963 449 VAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLD-GKWAYGLSCIEYTEFDKFGITR----GPFSS 522 (862)
Q Consensus 449 La~v-DP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~d-Gk~~~~~~vVEYsEl~~~~~~~----~~~~d 522 (862)
|+++ ||.+ +|+++..+.++.+++ ++|+.++|++|++|. .+ |+ ++||||+|+|++...+ ++.++
T Consensus 147 la~v~DP~~---lG~~~~~~~~~~~kv-v~K~~~d~k~G~~~~---~~~g~----~~~vEyse~~~~~~~~~~~~~~~~~ 215 (266)
T cd04180 147 LVKVADPLF---IGIAIQNRKAINQKV-VPKTRNEESGGYRIA---NINGR----VQLLEYDQIKKLLKQKMVNNQIPKD 215 (266)
T ss_pred CccccCHHH---HHHHHHcCCCEEEEE-EECCCCCCeEEEEEE---ecCCC----EEEEEeccCCHHHHhccccccCcCC
Confidence 9999 9965 899999999999997 777889999999997 55 88 9999999999985222 11222
Q ss_pred CCccccCccceeeeEEeHHHHHhhhc
Q 002963 523 NGLQADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 523 g~l~S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
.+.++.+++|||||||+|+||+++++
T Consensus 216 ~~~~~~~~~n~~~~~~~l~~l~~~~~ 241 (266)
T cd04180 216 IDDAPFFLFNTNNLINFLVEFKDRVD 241 (266)
T ss_pred CCceeeccceEEEEEEEHHHHHHHHH
Confidence 23345567799999999999999873
No 13
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.55 E-value=0.0035 Score=70.13 Aligned_cols=196 Identities=11% Similarity=0.093 Sum_probs=115.0
Q ss_pred CcEEEEEecCCccccCCC---CCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCc
Q 002963 287 PELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 362 (862)
Q Consensus 287 ~kvAvVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~T 362 (862)
+++-.|+||||.||||.- +.||. ++|+ .|+ +++++.++.+.+ .| + --++|.|.. .
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~--llpv-----~gk~pli~~~l~~l~~--------~G--i-~~i~iv~~~---~ 60 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKP--AVPF-----GGKYRIIDFTLSNCAN--------SG--I-DTVGVLTQY---Q 60 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccc--eeee-----CCceeehhHHHHHHHh--------CC--C-CEEEEEecC---C
Confidence 367789999999999996 78999 9987 578 799999998865 24 2 246788876 7
Q ss_pred hHHHHHHHHHhCCCCCCCCc--eEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceE
Q 002963 363 HERITSLCERLRWFGRGQSS--FQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKG 439 (862)
Q Consensus 363 he~T~~fle~n~yFGl~~~q--V~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Giky 439 (862)
.+...++|.+...||++..+ +.+ .| |... .+ -.-.|-|.|+ ++.++. .+....-++
T Consensus 61 ~~~i~~~~~~~~~~~~~~~~~~~~i-~~---~~~~-~~----------~~~~~~Gta~al~~a~~------~l~~~~~~~ 119 (380)
T PRK05293 61 PLELNNHIGIGSPWDLDRINGGVTI-LP---PYSE-SE----------GGKWYKGTAHAIYQNID------YIDQYDPEY 119 (380)
T ss_pred HHHHHHHHhCCCcccccCCCCCEEE-eC---Cccc-CC----------CCcccCCcHHHHHHHHH------HHHhCCCCE
Confidence 88899999876667764321 211 11 0010 00 0011346544 343332 232222368
Q ss_pred EEEEeCCCccccccHhHHHHhhhhhhcCCceeEEEeeecC-CCCcCceEEEEeecCCCccccceEEEEecccCccCCCCC
Q 002963 440 ATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRG 518 (862)
Q Consensus 440 i~V~qvDN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~-~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~ 518 (862)
+.|.+-|++ ...| +..++-.+...++++.+.+ .+.+ ....+-|++.. ..+|+ ++++.|-|...
T Consensus 120 ~lV~~gD~l-~~~d--~~~ll~~h~~~~~~~tl~~-~~~~~~~~~~yG~v~~--d~~g~------V~~~~eKp~~~---- 183 (380)
T PRK05293 120 VLILSGDHI-YKMD--YDKMLDYHKEKEADVTIAV-IEVPWEEASRFGIMNT--DENMR------IVEFEEKPKNP---- 183 (380)
T ss_pred EEEecCCEE-EcCC--HHHHHHHHHhcCCCEEEEE-EEcchhhccccCEEEE--CCCCc------EEEEEeCCCCC----
Confidence 889999984 3343 2244555556666654443 2222 12335677753 13444 44444433211
Q ss_pred CCCCCCccccCccceeeeEEeHHHHHhhhc
Q 002963 519 PFSSNGLQADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 519 ~~~dg~l~S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
. . ...|+..++|+-+.+.+.+.
T Consensus 184 ---~-~----~~~~~Giyi~~~~~l~~~l~ 205 (380)
T PRK05293 184 ---K-S----NLASMGIYIFNWKRLKEYLI 205 (380)
T ss_pred ---C-c----ceeeeEEEEEcHHHHHHHHH
Confidence 0 1 12499999999988877664
No 14
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=97.46 E-value=0.0072 Score=61.40 Aligned_cols=176 Identities=20% Similarity=0.159 Sum_probs=101.1
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 291 vVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
.|+||||.|+|||- ..||. ++|+ .|+++++..++.+... | + -.++|.|+. ..+.+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~--ll~i-----~g~pli~~~l~~l~~~--------g--~-~~v~vv~~~---~~~~i~ 59 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKP--LAPV-----AGRPFLEYLLEYLARQ--------G--I-SRIVLSVGY---LAEQIE 59 (223)
T ss_pred CEEecCCcccccCcccCCCCcc--ccEE-----CCcchHHHHHHHHHHC--------C--C-CEEEEEccc---CHHHHH
Confidence 37899999999974 57999 8887 6889999999887652 3 1 146677765 567788
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~qvD 446 (862)
+++.....+|. .+.+ .. . ..+-|.++ ++.++. .+ +-+++.+.+.|
T Consensus 60 ~~~~~~~~~~~---~~~~--------~~-~-------------~~~~G~~~~l~~a~~------~~---~~~~~lv~~~D 105 (223)
T cd06915 60 EYFGDGYRGGI---RIYY--------VI-E-------------PEPLGTGGAIKNALP------KL---PEDQFLVLNGD 105 (223)
T ss_pred HHHcCccccCc---eEEE--------EE-C-------------CCCCcchHHHHHHHh------hc---CCCCEEEEECC
Confidence 88775332332 1211 11 0 12455554 444442 12 23678888889
Q ss_pred CccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 002963 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (862)
Q Consensus 447 N~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (862)
++. ..| +..++-.+...+.++.+.+ .+.... ..-|++.. ..+|+ ++++.+=+.. +.
T Consensus 106 ~~~-~~~--~~~~l~~~~~~~~~~~~~~-~~~~~~-~~~~~v~~--d~~~~------v~~~~ek~~~--------~~--- 161 (223)
T cd06915 106 TYF-DVD--LLALLAALRASGADATMAL-RRVPDA-SRYGNVTV--DGDGR------VIAFVEKGPG--------AA--- 161 (223)
T ss_pred ccc-CCC--HHHHHHHHHhCCCcEEEEE-EECCCC-CcceeEEE--CCCCe------EEEEEeCCCC--------CC---
Confidence 865 333 3244444445566666554 443222 23445432 13444 4445442211 00
Q ss_pred ccCccceeeeEEeHHHHHhh
Q 002963 527 ADFPANTNILYVDLASAELV 546 (862)
Q Consensus 527 S~F~~Ninn~~fsL~~l~~v 546 (862)
.+..|++.++|+-++++.+
T Consensus 162 -~~~~~~Giy~~~~~~l~~~ 180 (223)
T cd06915 162 -PGLINGGVYLLRKEILAEI 180 (223)
T ss_pred -CCcEEEEEEEECHHHHhhC
Confidence 1334899999999988764
No 15
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.42 E-value=0.0048 Score=71.61 Aligned_cols=186 Identities=13% Similarity=0.135 Sum_probs=107.5
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
.++.|+||||.||||+...||. ++|+ .|+++++..++++.+. | .-.++|.++. ..+.+.
T Consensus 4 ~~~avILAaG~gtRm~~~~pK~--llpi-----~gkpli~~~l~~l~~~--------g---~~~iivvv~~---~~~~i~ 62 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRSDTPKV--LHTL-----AGRSMLGHVLHAAAGL--------A---PQHLVVVVGH---DRERVA 62 (482)
T ss_pred CceEEEEcCCCCCcCCCCCCce--ecee-----CCccHHHHHHHHHHhc--------C---CCcEEEEECC---CHHHHH
Confidence 5678999999999999888999 8876 6899999999988653 2 3367778876 456677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~qvD 446 (862)
+++++.. ..+.+..| ..|.|-|+ ++.++. .+....-++++|.+.|
T Consensus 63 ~~~~~~~------~~~~~~~~----------------------~~~~Gt~~si~~al~------~l~~~~~~~vlV~~gD 108 (482)
T PRK14352 63 PAVAELA------PEVDIAVQ----------------------DEQPGTGHAVQCALE------ALPADFDGTVVVTAGD 108 (482)
T ss_pred HHhhccC------CccEEEeC----------------------CCCCCcHHHHHHHHH------HhccCCCCeEEEEeCC
Confidence 7775421 11222222 12334333 555553 2222234688999999
Q ss_pred CccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 002963 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (862)
Q Consensus 447 N~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (862)
+++...+ .+-.++-.+...+..+.+.. .+ .....+-|++.. ..+|+ ...++|..+.++.. ..
T Consensus 109 ~P~~~~~-~l~~li~~~~~~~~~~~v~~-~~-~~~p~~yg~~~~--~~~g~---V~~~~EKp~~~~~~----------~~ 170 (482)
T PRK14352 109 VPLLDGE-TLADLVATHTAEGNAVTVLT-TT-LDDPTGYGRILR--DQDGE---VTAIVEQKDATPSQ----------RA 170 (482)
T ss_pred eeccCHH-HHHHHHHHHHhcCCeEEEEE-ee-cCCCCCCCEEEE--CCCCC---EEEEEECCCCCHHH----------hh
Confidence 9865432 12233444334444433332 22 222334566543 24555 12344433322110 10
Q ss_pred ccCc-cceeeeEEeHHHHHhhhc
Q 002963 527 ADFP-ANTNILYVDLASAELVGS 548 (862)
Q Consensus 527 S~F~-~Ninn~~fsL~~l~~vl~ 548 (862)
.. .|++.++|+-+.|.+.+.
T Consensus 171 --~~~~~~Giy~f~~~~l~~~~~ 191 (482)
T PRK14352 171 --IREVNSGVYAFDAAVLRSALA 191 (482)
T ss_pred --cceEEEEEEEEEHHHHHHHHH
Confidence 11 489999999998887764
No 16
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=97.38 E-value=0.0067 Score=62.38 Aligned_cols=181 Identities=14% Similarity=0.113 Sum_probs=102.4
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHHHHH
Q 002963 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 370 (862)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~fl 370 (862)
+|+||||.||||+-..||. ++|+ .|+++++..++.+... | .-.++|.|+. .++...+++
T Consensus 1 aiIlaaG~g~R~~~~~pK~--l~~v-----~gkpli~~~i~~l~~~--------~---i~~i~iv~~~---~~~~i~~~~ 59 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKV--LHPL-----AGKPMLEHVLDAARAL--------G---PDRIVVVVGH---GAEQVKKAL 59 (229)
T ss_pred CEEEeCCCCccCCCCCChh--ccee-----CCccHHHHHHHHHHhC--------C---CCeEEEEECC---CHHHHHHHh
Confidence 3789999999999778999 8887 6899999988877552 2 2356777776 467777776
Q ss_pred HHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCCCcc
Q 002963 371 ERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNVV 449 (862)
Q Consensus 371 e~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~qvDN~L 449 (862)
.+ + .+.++.|. .+.|.++ ++.++. .+ +.+.+++.+.+.|+++
T Consensus 60 ~~---~-----~~~~~~~~----------------------~~~g~~~ai~~a~~------~~-~~~~~~vli~~~D~p~ 102 (229)
T cd02540 60 AN---P-----NVEFVLQE----------------------EQLGTGHAVKQALP------AL-KDFEGDVLVLYGDVPL 102 (229)
T ss_pred CC---C-----CcEEEECC----------------------CCCCCHHHHHHHHH------hh-ccCCCeEEEEeCCccc
Confidence 64 2 23333331 1234333 343332 22 2246789999999986
Q ss_pred ccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccccC
Q 002963 450 AATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADF 529 (862)
Q Consensus 450 a~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S~F 529 (862)
...+ .+-.++-.....++++.+.+ .+...+ ..-|++.. ..+|+ ++++.+=+... . .+.. .+
T Consensus 103 ~~~~-~i~~l~~~~~~~~~~~~~~~-~~~~~p-~~~~~~~~--~~~~~------v~~~~ek~~~~-~------~~~~-~~ 163 (229)
T cd02540 103 ITPE-TLQRLLEAHREAGADVTVLT-AELEDP-TGYGRIIR--DGNGK------VLRIVEEKDAT-E------EEKA-IR 163 (229)
T ss_pred cCHH-HHHHHHHHHHhcCCcEEEEE-EEcCCC-CCccEEEE--cCCCC------EEEEEECCCCC-h------HHHh-hc
Confidence 5432 12122333334445555443 333333 34455543 13454 33333322111 0 0000 02
Q ss_pred ccceeeeEEeHHHHHhhhc
Q 002963 530 PANTNILYVDLASAELVGS 548 (862)
Q Consensus 530 ~~Ninn~~fsL~~l~~vl~ 548 (862)
..|++.++|+-+.+.+.++
T Consensus 164 ~~~~giy~~~~~~~~~~l~ 182 (229)
T cd02540 164 EVNAGIYAFDAEFLFEALP 182 (229)
T ss_pred eEEeEEEEEEHHHHHHHHH
Confidence 3489999999887776664
No 17
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.38 E-value=0.0082 Score=68.34 Aligned_cols=206 Identities=14% Similarity=0.114 Sum_probs=116.4
Q ss_pred ccCcEEEEEecCCccccCC---CCCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCC
Q 002963 285 GLPELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAK 360 (862)
Q Consensus 285 ~L~kvAvVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k 360 (862)
+..++..|+||||.||||. .+.||. ++|+ .|+ +++++.++.+... | .--++|.|..
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~--llPv-----~gk~plI~~~L~~l~~~--------G---i~~i~iv~~~-- 61 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKP--AVPF-----GGSYRLIDFVLSNLVNS--------G---YLRIYVLTQY-- 61 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCccc--ceee-----CCcceEhHHHHHHHHHC--------C---CCEEEEEecc--
Confidence 3567889999999999999 899999 9988 577 8999998877663 3 2345777876
Q ss_pred CchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEE
Q 002963 361 NNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGA 440 (862)
Q Consensus 361 ~The~T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi 440 (862)
..+...++|.+. +++....+.++.. +|.-. . .-...|-|-|+-.... ++.+....-+++
T Consensus 62 -~~~~i~~~~~~~--~~~~~~~~~~~~~--~~~~~-~----------~~~~~~lGta~al~~a-----~~~i~~~~~~~~ 120 (407)
T PRK00844 62 -KSHSLDRHISQT--WRLSGLLGNYITP--VPAQQ-R----------LGKRWYLGSADAIYQS-----LNLIEDEDPDYV 120 (407)
T ss_pred -CHHHHHHHHHhC--cCccccCCCeEEE--CCccc-C----------CCCCcccCCHHHHHHH-----HHHHHhcCCCEE
Confidence 788899999742 2222111211110 00000 0 0012245666543322 223434344788
Q ss_pred EEEeCCCccccccHhHHHHhhhhhhcCCceeEEEeeecC-CCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCC
Q 002963 441 TVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGP 519 (862)
Q Consensus 441 ~V~qvDN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~-~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~ 519 (862)
.|.+-|++ ...|. -.++-++...++++.+.+ .+.+ .....-|++.. ..+|+ +.++.|=|... ....
T Consensus 121 lv~~gD~v-~~~dl--~~l~~~h~~~~~~~ti~~-~~~~~~~~~~~Gvv~~--d~~g~------v~~~~eKp~~~-~~~~ 187 (407)
T PRK00844 121 VVFGADHV-YRMDP--RQMVDFHIESGAGVTVAA-IRVPREEASAFGVIEV--DPDGR------IRGFLEKPADP-PGLP 187 (407)
T ss_pred EEecCCEE-EcCCH--HHHHHHHHhcCCcEEEEE-EecchHHcccCCEEEE--CCCCC------EEEEEECCCCc-cccc
Confidence 88899984 33433 244666666676665554 2221 12234577753 23454 33444433221 0000
Q ss_pred CCCCCccccCccceeeeEEeHHHHHhhhc
Q 002963 520 FSSNGLQADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 520 ~~dg~l~S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
...+ ..-.|+..+.|+-+.|.+.++
T Consensus 188 ~~~~----~~~~~~Giyi~~~~~l~~~l~ 212 (407)
T PRK00844 188 DDPD----EALASMGNYVFTTDALVDALR 212 (407)
T ss_pred CCCC----CcEEEeEEEEEeHHHHHHHHH
Confidence 0001 123599999999999877664
No 18
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=97.38 E-value=0.0076 Score=62.50 Aligned_cols=68 Identities=24% Similarity=0.402 Sum_probs=52.4
Q ss_pred EEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHH
Q 002963 290 GEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (862)
Q Consensus 290 AvVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T 366 (862)
..|+||||.||||+ ...||. ++|+ .|+++++..++.+.+. | .-.++|.|+. ..+..
T Consensus 2 ~avIlAaG~g~Rl~plt~~~pK~--l~~i-----~g~~li~~~l~~l~~~--------~---~~~i~vv~~~---~~~~~ 60 (236)
T cd04189 2 KGLILAGGKGTRLRPLTYTRPKQ--LIPV-----AGKPIIQYAIEDLREA--------G---IEDIGIVVGP---TGEEI 60 (236)
T ss_pred eEEEECCCccccccccccCCCce--eeEE-----CCcchHHHHHHHHHHC--------C---CCEEEEEcCC---CHHHH
Confidence 46889999999997 578999 9887 6889999988887542 3 1256788887 77888
Q ss_pred HHHHHHhCCCCC
Q 002963 367 TSLCERLRWFGR 378 (862)
Q Consensus 367 ~~fle~n~yFGl 378 (862)
.+++++...+|+
T Consensus 61 ~~~~~~~~~~~~ 72 (236)
T cd04189 61 KEALGDGSRFGV 72 (236)
T ss_pred HHHhcchhhcCC
Confidence 888887555554
No 19
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=97.35 E-value=0.0064 Score=62.93 Aligned_cols=132 Identities=15% Similarity=0.156 Sum_probs=83.1
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
.|+||||.||||+ ...||. ++|+ .|++++++.++.+.+. | .--++|.|.. ..+.+.
T Consensus 3 aiIla~G~g~Rl~plt~~~pK~--llpi-----~g~piI~~~l~~l~~~--------G---i~~I~iv~~~---~~~~i~ 61 (217)
T cd04197 3 AVVLADSFNRRFRPLTKEKPRC--LLPL-----ANVPLIDYTLEFLALN--------G---VEEVFVFCCS---HSDQIK 61 (217)
T ss_pred EEEEcCCCcccccccccCCCce--eeEE-----CCEehHHHHHHHHHHC--------C---CCeEEEEeCC---CHHHHH
Confidence 5889999999998 578999 9887 5889999998887662 4 2246778876 678899
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN 447 (862)
++|++..++++... ...+..+. . ..+.|-|+..+.+...+.+ .+.+.+.+-|+
T Consensus 62 ~~l~~~~~~~~~~~------~~~i~~~~-~-------------~~~~~~~~al~~~~~~~~~-------~~~flv~~gD~ 114 (217)
T cd04197 62 EYIEKSKWSKPKSS------LMIVIIIM-S-------------EDCRSLGDALRDLDAKGLI-------RGDFILVSGDV 114 (217)
T ss_pred HHHhhccccccccC------cceEEEEe-C-------------CCcCccchHHHHHhhcccc-------CCCEEEEeCCe
Confidence 99998766654321 00111111 0 1234556666665544433 24566788887
Q ss_pred ccccccHhHHHHhhhhhhc-----CCceeEE
Q 002963 448 VVAATDLTLLALAGIGLHH-----GKKLGFA 473 (862)
Q Consensus 448 ~La~vDP~il~flG~~~~~-----~~~~~~~ 473 (862)
+. ..|. -.++-++... ++++.+.
T Consensus 115 i~-~~dl--~~~l~~h~~~~~~~~~a~~t~~ 142 (217)
T cd04197 115 VS-NIDL--KEILEEHKERRKKDKNAIMTMV 142 (217)
T ss_pred ee-ccCH--HHHHHHHHHhhccccCceEEEE
Confidence 54 3443 2446666553 5555443
No 20
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=97.33 E-value=0.0032 Score=70.30 Aligned_cols=193 Identities=16% Similarity=0.105 Sum_probs=109.7
Q ss_pred cEEEEEecCCccccCCC---CCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCch
Q 002963 288 ELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~Th 363 (862)
++..|+||||.||||.= +.||. |+|| .|| ++++++++.+.+. | .--++|.+.. .-.
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKp--LlpV-----~gk~PlIe~~l~~L~~~--------G---i~~I~iv~~~--~~~ 61 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLA--SLPF-----GGRYRLIDFPLSNMVNA--------G---IRNVFIFFKN--KER 61 (369)
T ss_pred cEEEEEECCCCCccccccccCCccc--cccc-----CCeeeEEEEEhhhhhcc--------C---CCEEEEEeCC--CcH
Confidence 46779999999999973 78998 8877 688 8999999988663 3 2356777776 233
Q ss_pred HHHHHHHHHhCCCCCCCCce---EEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEE
Q 002963 364 ERITSLCERLRWFGRGQSSF---QLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGA 440 (862)
Q Consensus 364 e~T~~fle~n~yFGl~~~qV---~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi 440 (862)
+...++|.+...||++..+. .++.|+ ..|-|-|+.+...... +.+...+-+.+
T Consensus 62 ~~I~~~l~~~~~~~~~~~~~~~~~~~~~e---------------------~~~l~tg~~~a~~~a~---~~l~~~~~~~~ 117 (369)
T TIGR02092 62 QSLFDHLGSGREWDLHRKRDGLFVFPYND---------------------RDDLSEGGKRYFSQNL---EFLKRSTSEYT 117 (369)
T ss_pred HHHHHHHhCCCCCCcccccCcEEEEeccC---------------------CCCcccChHHHHHHHH---HHHHhCCCCEE
Confidence 48999998876777643211 111121 1223334444332221 22222234688
Q ss_pred EEEeCCCccccccHhHHHHhhhhhhcCCceeEEEeeecC--CCCcCceEEEEeecCCCccccceEEEEecccCccCCCCC
Q 002963 441 TVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS--GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRG 518 (862)
Q Consensus 441 ~V~qvDN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~--~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~ 518 (862)
.|.+-|+ +...| +..++-++...++++.+.+ .+.. .+..-.|++.. ..+|+ +. ++.+-++.
T Consensus 118 lvlnGD~-l~~~d--l~~ll~~h~~~~a~~tl~~-~~v~~~~~~~~g~vv~~--~~~g~----v~--~~~~~~~~----- 180 (369)
T TIGR02092 118 VVLNSHM-VCNID--LKAVLKYHEETGKDITVVY-KKVKPADASEYDTILRF--DESGK----VK--SIGQNLNP----- 180 (369)
T ss_pred EEECCCE-EEecC--HHHHHHHHHHcCCCEEEEE-EecCHHHccccCcEEEE--cCCCC----EE--eccccCCC-----
Confidence 9999998 44444 3344666666677665543 3322 12223345543 13444 32 22111110
Q ss_pred CCCCCCccccCccceeeeEEeHHHHHhhhc
Q 002963 519 PFSSNGLQADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 519 ~~~dg~l~S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
+.. ...|+..++|+-+.+.+.++
T Consensus 181 ---~~~----~~~~~Giyi~~~~~l~~~l~ 203 (369)
T TIGR02092 181 ---EEE----ENISLDIYIVSTDLLIELLY 203 (369)
T ss_pred ---CCc----ceeeeeEEEEEHHHHHHHHH
Confidence 001 11378899999887766654
No 21
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=97.32 E-value=0.0096 Score=60.39 Aligned_cols=173 Identities=20% Similarity=0.240 Sum_probs=103.2
Q ss_pred EEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHHH
Q 002963 292 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (862)
Q Consensus 292 VlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~ 368 (862)
|+||||.||||+ ...||. ++|+ .|++++++.++.+... | .-.++|.|.. ..+.+.+
T Consensus 2 iIlaaG~g~R~~~~t~~~pK~--ll~v-----~g~pli~~~l~~l~~~--------g---~~~i~vv~~~---~~~~i~~ 60 (217)
T cd04181 2 VILAAGKGTRLRPLTDTRPKP--LLPI-----AGKPILEYIIERLARA--------G---IDEIILVVGY---LGEQIEE 60 (217)
T ss_pred EEecCCccccccccccCCCcc--ccEE-----CCeeHHHHHHHHHHHC--------C---CCEEEEEecc---CHHHHHH
Confidence 789999999998 468999 8887 6889999999987653 2 2345777776 4567777
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCc
Q 002963 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (862)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN~ 448 (862)
++.+...+|+ .|.+..|. .|.|.|+-..... +.+ .-+++.|...|++
T Consensus 61 ~~~~~~~~~~---~i~~~~~~----------------------~~~g~~~al~~~~-----~~~---~~~~~lv~~~D~~ 107 (217)
T cd04181 61 YFGDGSKFGV---NIEYVVQE----------------------EPLGTAGAVRNAE-----DFL---GDDDFLVVNGDVL 107 (217)
T ss_pred HHcChhhcCc---eEEEEeCC----------------------CCCccHHHHHHhh-----hhc---CCCCEEEEECCee
Confidence 7776543442 23221111 2345544333222 122 4578889999985
Q ss_pred cccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcccc
Q 002963 449 VAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQAD 528 (862)
Q Consensus 449 La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S~ 528 (862)
. ..| +..++-.+...++++.+.+ .+.. ....-|++.. ..+|+ ++++.|-+... . .
T Consensus 108 ~-~~~--~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~v~~--d~~~~------v~~~~ek~~~~-------~-----~ 162 (217)
T cd04181 108 T-DLD--LSELLRFHREKGADATIAV-KEVE-DPSRYGVVEL--DDDGR------VTRFVEKPTLP-------E-----S 162 (217)
T ss_pred c-CcC--HHHHHHHHHhcCCCEEEEE-EEcC-CCCcceEEEE--cCCCc------EEEEEECCCCC-------C-----C
Confidence 3 333 2244556666677766554 3322 3445566653 12344 45555433221 0 1
Q ss_pred CccceeeeEEeHHHH
Q 002963 529 FPANTNILYVDLASA 543 (862)
Q Consensus 529 F~~Ninn~~fsL~~l 543 (862)
...|++.++|+-+.+
T Consensus 163 ~~~~~Giy~~~~~~~ 177 (217)
T cd04181 163 NLANAGIYIFEPEIL 177 (217)
T ss_pred CEEEEEEEEECHHHH
Confidence 335899999998776
No 22
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.31 E-value=0.01 Score=67.31 Aligned_cols=178 Identities=13% Similarity=0.112 Sum_probs=105.9
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHHH
Q 002963 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (862)
Q Consensus 289 vAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~ 368 (862)
+.+|+||||.||||+...||- ++|+ .|+++++..+++++.. . -.++|+++. ..+...+
T Consensus 3 ~~aiIlAaG~GtRl~~~~pK~--Llpi-----~gkPli~~~i~~l~~~--------~----~~i~Ivv~~---~~~~i~~ 60 (430)
T PRK14359 3 LSIIILAAGKGTRMKSSLPKV--LHTI-----CGKPMLFYILKEAFAI--------S----DDVHVVLHH---QKERIKE 60 (430)
T ss_pred ccEEEEcCCCCccCCCCCCce--eCEE-----CCccHHHHHHHHHHHc--------C----CcEEEEECC---CHHHHHH
Confidence 567899999999999989999 9887 6899999999988652 1 236777776 5777888
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCc
Q 002963 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (862)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN~ 448 (862)
++.+. ++ ++.+..|+ ...+.|.|+....+ ...-+++.+.+.|++
T Consensus 61 ~~~~~--~~----~v~~~~~~--------------------~~~~~gt~~al~~~----------~~~~d~vlv~~gD~p 104 (430)
T PRK14359 61 AVLEY--FP----GVIFHTQD--------------------LENYPGTGGALMGI----------EPKHERVLILNGDMP 104 (430)
T ss_pred HHHhc--CC----ceEEEEec--------------------CccCCCcHHHHhhc----------ccCCCeEEEEECCcc
Confidence 88753 21 34444332 11234555543321 112478999999997
Q ss_pred cccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcccc
Q 002963 449 VAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQAD 528 (862)
Q Consensus 449 La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S~ 528 (862)
+... .. +-.....++++.+.+ .+...+. .-|++.. .||+ ...++|....... + .. .
T Consensus 105 ~~~~--~~---l~~l~~~~~~~~v~~-~~~~~~~-~~g~v~~---d~g~---v~~i~e~~~~~~~--------~--~~-~ 160 (430)
T PRK14359 105 LVEK--DE---LEKLLENDADIVMSV-FHLADPK-GYGRVVI---ENGQ---VKKIVEQKDANEE--------E--LK-I 160 (430)
T ss_pred CCCH--HH---HHHHHhCCCCEEEEE-EEcCCCc-cCcEEEE---cCCe---EEEEEECCCCCcc--------c--cc-c
Confidence 7433 22 233334455554443 3333332 3456543 3565 1234443321110 0 00 1
Q ss_pred CccceeeeEEeHHHHHhhhc
Q 002963 529 FPANTNILYVDLASAELVGS 548 (862)
Q Consensus 529 F~~Ninn~~fsL~~l~~vl~ 548 (862)
+..|+..++|+-+++++.+.
T Consensus 161 ~~~~~Giyif~~~~l~~~~~ 180 (430)
T PRK14359 161 KSVNAGVYLFDRKLLEEYLP 180 (430)
T ss_pred eEEEeEEEEEEHHHHHHHHH
Confidence 33489999999999987654
No 23
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.30 E-value=0.0079 Score=68.71 Aligned_cols=185 Identities=13% Similarity=0.086 Sum_probs=102.1
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHHH
Q 002963 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (862)
Q Consensus 289 vAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~ 368 (862)
+++|+||||.|+|||...||. ++|+ .|+++++..++.+.+. | ....+|.+.. ..+...+
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~--ll~v-----~gkpli~~~l~~l~~~--------g---~~~iivvv~~---~~~~i~~ 60 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKV--LHPL-----GGKSLVERVLDSCEEL--------K---PDRRLVIVGH---QAEEVEQ 60 (450)
T ss_pred ceEEEEeCCCCccCCCCCChh--cCEE-----CChhHHHHHHHHHHhC--------C---CCeEEEEECC---CHHHHHH
Confidence 578999999999999888999 8887 6899999999887653 2 2355666665 3445666
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCc
Q 002963 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (862)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN~ 448 (862)
+++++. .+.+..|. .+.|.++-+.+.. +.+. ..-.+++|...|.+
T Consensus 61 ~~~~~~-------~i~~v~~~----------------------~~~G~~~sv~~~~-----~~l~-~~~~~vlV~~~D~P 105 (450)
T PRK14360 61 SLAHLP-------GLEFVEQQ----------------------PQLGTGHAVQQLL-----PVLK-GFEGDLLVLNGDVP 105 (450)
T ss_pred HhcccC-------CeEEEEeC----------------------CcCCcHHHHHHHH-----HHhh-ccCCcEEEEeCCcc
Confidence 665321 23222211 1345444332221 2222 12246888999998
Q ss_pred cccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcccc
Q 002963 449 VAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQAD 528 (862)
Q Consensus 449 La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S~ 528 (862)
+...+ .+-.++-.....++++.+.. .+...+. .-|++.. ..+|+ ....+|...+.+.. ..+
T Consensus 106 ~i~~~-~l~~ll~~~~~~~~~~~~~~-~~~~~~~-~~g~~~~--d~~g~---v~~~~ek~~~~~~~-------~~~---- 166 (450)
T PRK14360 106 LLRPE-TLEALLNTHRSSNADVTLLT-ARLPNPK-GYGRVFC--DGNNL---VEQIVEDRDCTPAQ-------RQN---- 166 (450)
T ss_pred ccCHH-HHHHHHHHHHhcCCcEEEEE-EecCCCC-CccEEEE--CCCCC---EEEEEECCCCChhH-------hcC----
Confidence 75531 12123444444555554432 3333332 3455532 24554 12333332221110 001
Q ss_pred CccceeeeEEeHHHHHhhhc
Q 002963 529 FPANTNILYVDLASAELVGS 548 (862)
Q Consensus 529 F~~Ninn~~fsL~~l~~vl~ 548 (862)
...|+..++|+-+.+.++++
T Consensus 167 ~~~~~Giy~f~~~~l~~~~~ 186 (450)
T PRK14360 167 NRINAGIYCFNWPALAEVLP 186 (450)
T ss_pred cEEEEEEEEEEHHHHHHHHh
Confidence 22588999999988887764
No 24
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=97.29 E-value=0.013 Score=64.49 Aligned_cols=181 Identities=19% Similarity=0.204 Sum_probs=106.3
Q ss_pred cEEEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchH
Q 002963 288 ELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The 364 (862)
.+-.|+||||.||||.- ..||- ++|| .||+++++.++.+.. .| + --++|.+.. .-.+
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~--Llpv-----~gkPmI~~~l~~l~~--------aG--i-~~I~ii~~~--~~~~ 62 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQ--LLPI-----YDKPMIYYPLSTLML--------AG--I-RDILIISTP--QDTP 62 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCce--EeEE-----CCEEHHHHHHHHHHH--------CC--C-CEEEEEecC--CchH
Confidence 46679999999999985 78999 9987 588999998888765 24 2 235555555 3455
Q ss_pred HHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEe
Q 002963 365 RITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQ 444 (862)
Q Consensus 365 ~T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~q 444 (862)
...++|.+...||+ ++.+..|. .|.|-|+-+.... ++.. +-+ +.+..
T Consensus 63 ~~~~~l~~g~~~g~---~i~y~~q~----------------------~~~Gta~Al~~a~------~~i~-~~~-~~lv~ 109 (292)
T PRK15480 63 RFQQLLGDGSQWGL---NLQYKVQP----------------------SPDGLAQAFIIGE------EFIG-GDD-CALVL 109 (292)
T ss_pred HHHHHHcCccccCc---eeEEEECC----------------------CCCCHHHHHHHHH------HHhC-CCC-EEEEE
Confidence 67888877666776 34333332 2666666554332 2222 223 45556
Q ss_pred CCCccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCC
Q 002963 445 VSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNG 524 (862)
Q Consensus 445 vDN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~ 524 (862)
-||++...|- -.++-.+...+.++.+.+ .+...+ +.-|++.. ..+|+ + +++.|=|... .+
T Consensus 110 gD~i~~~~~l--~~ll~~~~~~~~~~tv~~-~~v~~p-~~yGvv~~--d~~g~----v--~~i~EKP~~p--------~s 169 (292)
T PRK15480 110 GDNIFYGHDL--PKLMEAAVNKESGATVFA-YHVNDP-ERYGVVEF--DQNGT----A--ISLEEKPLQP--------KS 169 (292)
T ss_pred CCeeeeccCH--HHHHHHHHhCCCCeEEEE-EEcCCc-ccCcEEEE--CCCCc----E--EEEEECCCCC--------CC
Confidence 8888765542 244555555555555443 333322 45677753 13454 3 3333322210 01
Q ss_pred ccccCccceeeeEEeHHHHHh
Q 002963 525 LQADFPANTNILYVDLASAEL 545 (862)
Q Consensus 525 l~S~F~~Ninn~~fsL~~l~~ 545 (862)
..+|+..++|+-+.++.
T Consensus 170 ----~~a~~GiY~~~~~v~~~ 186 (292)
T PRK15480 170 ----NYAVTGLYFYDNDVVEM 186 (292)
T ss_pred ----CEEEEEEEEEChHHHHH
Confidence 12599999999765543
No 25
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=97.27 E-value=0.025 Score=59.16 Aligned_cols=188 Identities=13% Similarity=0.101 Sum_probs=102.7
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
+++.|+||||.++||+ +|. ++|+ .|+++++..++.+... | .-.++| .+. ++.+.
T Consensus 2 ~~~~iIlA~g~S~R~~---~K~--Ll~i-----~Gkpll~~~l~~l~~~--------~---i~~ivv-v~~----~~~i~ 55 (245)
T PRK05450 2 KFLIIIPARYASTRLP---GKP--LADI-----GGKPMIVRVYERASKA--------G---ADRVVV-ATD----DERIA 55 (245)
T ss_pred ceEEEEecCCCCCCCC---CCc--cccc-----CCcCHHHHHHHHHHhc--------C---CCeEEE-ECC----cHHHH
Confidence 5788999999999996 698 8876 7999999999987663 2 112333 332 35677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN 447 (862)
+++.+ +|. .+.+..| ..+.|-+.+..++..-+ ..+-.++.+.+.|+
T Consensus 56 ~~~~~---~~~---~v~~~~~----------------------~~~~gt~~~~~~~~~~~------~~~~~~vlv~~~D~ 101 (245)
T PRK05450 56 DAVEA---FGG---EVVMTSP----------------------DHPSGTDRIAEAAAKLG------LADDDIVVNVQGDE 101 (245)
T ss_pred HHHHH---cCC---EEEECCC----------------------cCCCchHHHHHHHHhcC------CCCCCEEEEecCCC
Confidence 77754 232 1211001 12445555554433211 12346889999999
Q ss_pred ccccccHhHHHHhhhhhhcCCceeEEEeeecC-----CCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCC
Q 002963 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSS-----GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 522 (862)
Q Consensus 448 ~La~vDP~il~flG~~~~~~~~~~~~~vvRK~-----~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~d 522 (862)
++...+- +-.++-.+...+.++.+.+ .+.+ ...+.++++.. .+|+ +++..+-+... +.+..+
T Consensus 102 Pli~~~~-l~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~d---~~g~------v~~~~e~~~~~--~~~~~~ 168 (245)
T PRK05450 102 PLIPPEI-IDQVAEPLANPEADMATLA-VPIHDAEEAFNPNVVKVVLD---ADGR------ALYFSRAPIPY--GRDAFA 168 (245)
T ss_pred CCCCHHH-HHHHHHHHhcCCCCeEeee-eecCCHHHhcCcCCCEEEeC---CCCc------EEEecCCCCCC--CCCccc
Confidence 9876521 1123443333445555554 3321 12223566532 4555 44556554221 011111
Q ss_pred CCccccCccceeeeEEeHHHHHhhhc
Q 002963 523 NGLQADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 523 g~l~S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
.+.....-.|+....|+-..++.+.+
T Consensus 169 ~~~~~~~~~~~Giy~~~~~~l~~~~~ 194 (245)
T PRK05450 169 DSAPTPVYRHIGIYAYRRGFLRRFVS 194 (245)
T ss_pred cccCccccEEEEEEecCHHHHHHHHh
Confidence 00000123499999999988887654
No 26
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.27 E-value=0.0061 Score=69.84 Aligned_cols=184 Identities=15% Similarity=0.129 Sum_probs=103.5
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
.+..|+||||.|||||...||. ++|+ .|+++++..++.+.+. + .-.++|.|+. ..+...
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~--l~~i-----~gkpli~~~l~~l~~~--------~---~~~iivv~~~---~~~~i~ 63 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKV--LQTL-----LGEPMLRFVYRALRPL--------F---GDNVWTVVGH---RADMVR 63 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCce--eccc-----CCCcHHHHHHHHHHhc--------C---CCcEEEEECC---CHHHHH
Confidence 5778999999999999889999 8876 6899999999876542 2 1246666776 445554
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCc-HHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHG-AIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHG-dIy~aL~~sGlLd~l~~~Gikyi~V~qvD 446 (862)
+++.+ .++.+..|+ .|.|-| .++.++ +.|.+.+.+++.+...|
T Consensus 64 ~~~~~--------~~~~~v~~~----------------------~~~Gt~~al~~a~------~~l~~~~~d~vlv~~gD 107 (456)
T PRK14356 64 AAFPD--------EDARFVLQE----------------------QQLGTGHALQCAW------PSLTAAGLDRVLVVNGD 107 (456)
T ss_pred Hhccc--------cCceEEEcC----------------------CCCCcHHHHHHHH------HHHhhcCCCcEEEEeCC
Confidence 44432 122222111 133333 344433 44544567899999999
Q ss_pred CccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 002963 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (862)
Q Consensus 447 N~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (862)
.++...+ .+-.++.. ..+.+..+.+ .+-..+ ..-|++.. .+|+ -..++|-..+++.. ... .
T Consensus 108 ~P~i~~~-~i~~li~~--~~~~~~~l~~-~~~~~~-~~~g~v~~---~~g~---V~~~~ek~~~~~~~----~~~--~-- 168 (456)
T PRK14356 108 TPLVTTD-TIDDFLKE--AAGADLAFMT-LTLPDP-GAYGRVVR---RNGH---VAAIVEAKDYDEAL----HGP--E-- 168 (456)
T ss_pred cccCCHH-HHHHHHHH--HhcCCEEEEE-EEcCCC-CCceEEEE---cCCe---EEEEEECCCCChHH----hhh--h--
Confidence 9876542 12122333 2244444443 332323 24566643 4665 12333322222110 000 0
Q ss_pred ccCccceeeeEEeHHHHHhhhc
Q 002963 527 ADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 527 S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
..-.|+..+.|+-+++++++.
T Consensus 169 -~~~~~~GiY~f~~~~l~~ll~ 189 (456)
T PRK14356 169 -TGEVNAGIYYLRLDAVESLLP 189 (456)
T ss_pred -cCeEEEEEEEEEHHHHHHHHH
Confidence 012489999999998877664
No 27
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=97.24 E-value=0.0044 Score=67.05 Aligned_cols=198 Identities=13% Similarity=0.096 Sum_probs=110.4
Q ss_pred EEEEecCCccccCC----CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHH
Q 002963 290 GEIYPLGGSADRLG----LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (862)
Q Consensus 290 AvVlLAGGlGTRLG----~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~ 365 (862)
-.|+||||.||||. ...||- ++|+. .++|++|..++++..+. + .-.++|.|+. ...+.
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~--ll~l~----g~~~li~~~l~~l~~~~-------~---~~~i~vvt~~--~~~~~ 63 (274)
T cd02509 2 YPVILAGGSGTRLWPLSRESYPKQ--FLKLF----GDKSLLQQTLDRLKGLV-------P---PDRILVVTNE--EYRFL 63 (274)
T ss_pred EEEEEcccccccCCcCCCCCCCce--EeEcC----CCCcHHHHHHHHHhcCC-------C---CCcEEEEech--HHHHH
Confidence 36889999999996 578999 99985 55999999999876531 1 2378888987 45566
Q ss_pred HHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHH-cCceEEEEE
Q 002963 366 ITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHD-NGRKGATVR 443 (862)
Q Consensus 366 T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~-~Gikyi~V~ 443 (862)
+.+++++ ++ . .+.+..|+ .+.|-|+ +..++. .+.+ .+-+++.|.
T Consensus 64 v~~~l~~---~~-~--~~~ii~ep----------------------~~~gTa~ai~~a~~------~~~~~~~~~~vlVl 109 (274)
T cd02509 64 VREQLPE---GL-P--EENIILEP----------------------EGRNTAPAIALAAL------YLAKRDPDAVLLVL 109 (274)
T ss_pred HHHHHhh---cC-C--CceEEECC----------------------CCCCcHHHHHHHHH------HHHhcCCCCeEEEe
Confidence 7777765 11 1 12222221 1122232 333321 2222 234789999
Q ss_pred eCCCccccccHhHHHHhhhh---hhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCC
Q 002963 444 QVSNVVAATDLTLLALAGIG---LHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPF 520 (862)
Q Consensus 444 qvDN~La~vDP~il~flG~~---~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~ 520 (862)
..|.+....+ .|...+--+ +..+..+.+.+ .. ..+..+-|.+......+|. ...|..+.|=|+...++.-.
T Consensus 110 ~~D~~i~~~~-~f~~~l~~~~~~~~~~~~vt~gi-~p-~~~~t~yGyI~~~~~~~~~---~~~V~~f~EKP~~~~a~~~~ 183 (274)
T cd02509 110 PSDHLIEDVE-AFLKAVKKAVEAAEEGYLVTFGI-KP-TRPETGYGYIEAGEKLGGG---VYRVKRFVEKPDLETAKEYL 183 (274)
T ss_pred cchhcccCHH-HHHHHHHHHHHHHHcCCEEEEEe-ee-cCCCCCeEEEEeCCcCCCC---ceEEeEEEECcChHHHHHHh
Confidence 9998875321 111112111 12344454443 22 3455677888541001121 02455555555442111111
Q ss_pred CCCCccccCccceeeeEEeHHHHHhhhcc
Q 002963 521 SSNGLQADFPANTNILYVDLASAELVGSS 549 (862)
Q Consensus 521 ~dg~l~S~F~~Ninn~~fsL~~l~~vl~~ 549 (862)
.+| .|-.|...++|+.+.+.+.+++
T Consensus 184 ~~g----~~~wNsGiyi~~~~~l~~~l~~ 208 (274)
T cd02509 184 ESG----NYLWNSGIFLFRAKTFLEELKK 208 (274)
T ss_pred hcC----CeEEECceeeeeHHHHHHHHHH
Confidence 112 1445999999999999998875
No 28
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.22 E-value=0.013 Score=67.28 Aligned_cols=209 Identities=15% Similarity=0.117 Sum_probs=114.9
Q ss_pred cEEEEEecCCccccCC---CCCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCch
Q 002963 288 ELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~Th 363 (862)
++..|+||||.||||. ...||- ++|+ .|+ +++++.++++.. .| .-.++|.|+. ..
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~--Llpi-----~gk~plI~~~L~~l~~--------~G---i~~vivv~~~---~~ 61 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKP--AVPL-----AGKYRLIDIPISNCIN--------SG---INKIYVLTQF---NS 61 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcce--eeEE-----CCeeEEeHHHHHHHHH--------CC---CCEEEEEecC---CH
Confidence 6788999999999998 489999 9987 577 999999987765 24 2357888886 77
Q ss_pred HHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEE
Q 002963 364 ERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVR 443 (862)
Q Consensus 364 e~T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~ 443 (862)
+...++|.+..+|+.....+ +..+... ....-...+-|.|+-..... +.+....-+++.|.
T Consensus 62 ~~i~~~l~~~~~~~~~~~g~-------~~i~~~~-------~~~~~~~~~lGTa~al~~a~-----~~l~~~~~~~~lVl 122 (429)
T PRK02862 62 ASLNRHISQTYNFDGFSGGF-------VEVLAAQ-------QTPENPSWFQGTADAVRKYL-----WHFQEWDVDEYLIL 122 (429)
T ss_pred HHHHHHHhcCcCccccCCCE-------EEEeCCc-------ccCCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEe
Confidence 88999997643332111010 1011000 00000011247666443332 23333334678999
Q ss_pred eCCCccccccHhHHHHhhhhhhcCCceeEEEeeecCCC-CcCceEEEEeecCCCccccceEEEEecccCccCCCC---CC
Q 002963 444 QVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGA-TEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITR---GP 519 (862)
Q Consensus 444 qvDN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~-~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~---~~ 519 (862)
+-|++ ...|.. .++-++...++++.+.+ .+...+ ...-|++.. ..+|+ ++++.|-|.....+ .+
T Consensus 123 ~gD~l-~~~dl~--~ll~~h~~~~a~~tl~~-~~~~~~~~~~yG~i~~--d~~g~------V~~~~Ekp~~~~~~~~~~~ 190 (429)
T PRK02862 123 SGDQL-YRMDYR--LFVQHHRETGADITLAV-LPVDEKDASGFGLMKT--DDDGR------ITEFSEKPKGDELKAMAVD 190 (429)
T ss_pred cCCEE-EeCCHH--HHHHHHHHcCCCEEEEE-EecChhhcccceEEEE--CCCCc------EEEEEECCCccccchhccc
Confidence 99984 344432 34566666676665554 222211 224677753 13454 33444433321000 00
Q ss_pred CC----CC-Cc-cccCccceeeeEEeHHHHHhhhc
Q 002963 520 FS----SN-GL-QADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 520 ~~----dg-~l-~S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
.+ +. .. ...+-.|+..++|+-+.+.++++
T Consensus 191 ~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~ 225 (429)
T PRK02862 191 TSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLN 225 (429)
T ss_pred ccccccccccCCCCceEEEEEEEEEcHHHHHHHHH
Confidence 00 00 00 00123489999999999987765
No 29
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=97.08 E-value=0.022 Score=58.38 Aligned_cols=173 Identities=17% Similarity=0.153 Sum_probs=97.1
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
+|+||||.|+||+ ...||. ++|+ .|+++++..++++... | +. .++|.++. ..+...
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~--ll~~-----~g~pli~~~l~~l~~~--------~--~~-~iivv~~~---~~~~i~ 59 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKP--MLKV-----GGKPILETIIDRFIAQ--------G--FR-NFYISVNY---LAEMIE 59 (220)
T ss_pred CEEecCCCccccCcccCCCCCc--cCeE-----CCcchHHHHHHHHHHC--------C--Cc-EEEEECcc---CHHHHH
Confidence 4889999999997 368998 8877 6899999999888763 2 11 45667776 566777
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN 447 (862)
+++.+...+|+ ++.+..| -.|.|-|+...++.. ..-+.+.|...|+
T Consensus 60 ~~~~~~~~~~~---~i~~~~~----------------------~~~~g~~~~l~~~~~---------~~~~~~lv~~~D~ 105 (220)
T cd06426 60 DYFGDGSKFGV---NISYVRE----------------------DKPLGTAGALSLLPE---------KPTDPFLVMNGDI 105 (220)
T ss_pred HHHCCccccCc---cEEEEEC----------------------CCCCcchHHHHHHHh---------hCCCCEEEEcCCE
Confidence 77765433332 2222111 023354555443332 2246778888886
Q ss_pred ccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccc
Q 002963 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 527 (862)
Q Consensus 448 ~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S 527 (862)
+. .. .+-.++-.....+.++.+.+ .+ ......-|++-. .+|+ ++++.|=+ . . +
T Consensus 106 i~-~~--~~~~l~~~~~~~~~~~~~~~-~~-~~~~~~~g~~~~---d~~~------v~~~~ek~-~--------~-~--- 158 (220)
T cd06426 106 LT-NL--NYEHLLDFHKENNADATVCV-RE-YEVQVPYGVVET---EGGR------ITSIEEKP-T--------H-S--- 158 (220)
T ss_pred ee-cc--CHHHHHHHHHhcCCCEEEEE-EE-cCCCCcceEEEE---CCCE------EEEEEECC-C--------C-C---
Confidence 32 22 23344555545555555443 22 222334555532 2343 34443211 0 0 0
Q ss_pred cCccceeeeEEeHHHHHhh
Q 002963 528 DFPANTNILYVDLASAELV 546 (862)
Q Consensus 528 ~F~~Ninn~~fsL~~l~~v 546 (862)
...|++..+|+-+.++.+
T Consensus 159 -~~~~~Giy~~~~~~~~~i 176 (220)
T cd06426 159 -FLVNAGIYVLEPEVLDLI 176 (220)
T ss_pred -CeEEEEEEEEcHHHHhhc
Confidence 124889999998876543
No 30
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=97.08 E-value=0.031 Score=64.02 Aligned_cols=186 Identities=13% Similarity=0.106 Sum_probs=127.6
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
.+.+|+||-|+||||-.+-||. +=|+ .||+.++..++.+..+. .=-+++..+. -.+..+
T Consensus 2 ~~~~vILAAGkGTRMkS~lPKV--LH~v-----aGkpMl~hVi~~a~~l~-----------~~~i~vVvGh---~ae~V~ 60 (460)
T COG1207 2 SLSAVILAAGKGTRMKSDLPKV--LHPV-----AGKPMLEHVIDAARALG-----------PDDIVVVVGH---GAEQVR 60 (460)
T ss_pred CceEEEEecCCCccccCCCccc--chhc-----cCccHHHHHHHHHhhcC-----------cceEEEEEcC---CHHHHH
Confidence 4678999999999999999998 6554 89999999999888764 1112233343 667777
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCce-EEEEEeCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRK-GATVRQVS 446 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gik-yi~V~qvD 446 (862)
+-+.+.. ++.++.|.. -+ -+|+-++. ....+..+.+ .+.|.+-|
T Consensus 61 ~~~~~~~-------~v~~v~Q~e--ql--GTgHAV~~------------------------a~~~l~~~~~g~vLVl~GD 105 (460)
T COG1207 61 EALAERD-------DVEFVLQEE--QL--GTGHAVLQ------------------------ALPALADDYDGDVLVLYGD 105 (460)
T ss_pred HHhcccc-------CceEEEecc--cC--ChHHHHHh------------------------hhhhhhcCCCCcEEEEeCC
Confidence 7776532 577888876 11 23332221 1233445555 78899999
Q ss_pred CccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 002963 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (862)
Q Consensus 447 N~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (862)
=+|...+. +-.++......+++....+ ..-++| .+-|.+++ +.+|+ ...+||.-+.+++. +.
T Consensus 106 ~PLit~~T-L~~L~~~~~~~~~~~tvLt-~~~~dP-~GYGRIvr--~~~g~---V~~IVE~KDA~~ee---------k~- 167 (460)
T COG1207 106 VPLITAET-LEELLAAHPAHGAAATVLT-AELDDP-TGYGRIVR--DGNGE---VTAIVEEKDASEEE---------KQ- 167 (460)
T ss_pred cccCCHHH-HHHHHHhhhhcCCceEEEE-EEcCCC-CCcceEEE--cCCCc---EEEEEEcCCCCHHH---------hc-
Confidence 99988753 3246777777778887776 444444 35677776 35666 37799988777764 11
Q ss_pred ccCc-cceeeeEEeHHHHHhhhcc
Q 002963 527 ADFP-ANTNILYVDLASAELVGSS 549 (862)
Q Consensus 527 S~F~-~Ninn~~fsL~~l~~vl~~ 549 (862)
-. .|+..+.|+-..|.+.|.+
T Consensus 168 --I~eiNtGiy~f~~~~L~~~L~~ 189 (460)
T COG1207 168 --IKEINTGIYAFDGAALLRALPK 189 (460)
T ss_pred --CcEEeeeEEEEcHHHHHHHHHH
Confidence 23 3999999999999998864
No 31
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.08 E-value=0.019 Score=67.05 Aligned_cols=148 Identities=17% Similarity=0.214 Sum_probs=87.4
Q ss_pred CcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHH
Q 002963 287 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (862)
Q Consensus 287 ~kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T 366 (862)
.++..|+||||.|||||...||. ++|+ .|+++++..++++.+. | .-.++|.|.. ..+..
T Consensus 6 ~~~~avILAaG~gtRl~~~~pK~--llpi-----~gkpli~~~l~~l~~~--------g---i~~ivvv~~~---~~~~i 64 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKSALPKV--LHPV-----AGRPMVAWAVKAARDL--------G---ARKIVVVTGH---GAEQV 64 (481)
T ss_pred CCceEEEECCCCCCcCCCCCCce--ecEE-----CCeeHHHHHHHHHHhC--------C---CCeEEEEeCC---CHHHH
Confidence 46788999999999999888999 8887 6899999998877552 3 2346676765 55666
Q ss_pred HHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeC
Q 002963 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQV 445 (862)
Q Consensus 367 ~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~qv 445 (862)
.++|+. + .+.+..|. .|.|-|+ ++.++. .+. ..-..+.|.+.
T Consensus 65 ~~~~~~---~-----~i~~v~~~----------------------~~~Gt~~al~~~~~------~l~-~~~~~~lV~~g 107 (481)
T PRK14358 65 EAALQG---S-----GVAFARQE----------------------QQLGTGDAFLSGAS------ALT-EGDADILVLYG 107 (481)
T ss_pred HHHhcc---C-----CcEEecCC----------------------CcCCcHHHHHHHHH------Hhh-CCCCcEEEEeC
Confidence 666642 1 23222221 1344444 333332 222 22233678899
Q ss_pred CCccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCc
Q 002963 446 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGK 497 (862)
Q Consensus 446 DN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk 497 (862)
|+++...+ .+-.++-.+...++++.+.+ .+.+.+ .+-|++.. ..+|+
T Consensus 108 D~P~i~~~-~l~~ll~~~~~~~~~~ti~~-~~~~~~-~~yG~v~~--d~~g~ 154 (481)
T PRK14358 108 DTPLLRPD-TLRALVADHRAQGSAMTILT-GELPDA-TGYGRIVR--GADGA 154 (481)
T ss_pred CeeccCHH-HHHHHHHHHHhcCCeEEEEE-EEcCCC-CCceEEEE--CCCCC
Confidence 99876542 12234555556666655443 333322 34677754 23554
No 32
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.06 E-value=0.022 Score=65.15 Aligned_cols=184 Identities=16% Similarity=0.195 Sum_probs=103.2
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
++..|+||||.|||||...||. ++|+ .|+++++..++.+... | .-.++|.++. .++...
T Consensus 5 ~~~aiILAaG~gsR~~~~~pK~--ll~v-----~gkpli~~~l~~l~~~--------g---i~~ivvv~~~---~~~~i~ 63 (446)
T PRK14353 5 TCLAIILAAGEGTRMKSSLPKV--LHPV-----AGRPMLAHVLAAAASL--------G---PSRVAVVVGP---GAEAVA 63 (446)
T ss_pred cceEEEEcCCCCCccCCCCCcc--cCEE-----CCchHHHHHHHHHHhC--------C---CCcEEEEECC---CHHHHH
Confidence 5678999999999999878999 8876 6899999999887652 2 2356777776 566677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~qvD 446 (862)
+++.+. +. .+.++.|. .|.|.++ ++.++ +.+ ..+-+++.|.+.|
T Consensus 64 ~~~~~~---~~---~~~~~~~~----------------------~~~G~~~sl~~a~------~~l-~~~~~~~lv~~~D 108 (446)
T PRK14353 64 AAAAKI---AP---DAEIFVQK----------------------ERLGTAHAVLAAR------EAL-AGGYGDVLVLYGD 108 (446)
T ss_pred HHhhcc---CC---CceEEEcC----------------------CCCCcHHHHHHHH------HHH-hccCCCEEEEeCC
Confidence 776531 11 12222220 1334433 33333 222 2234778888999
Q ss_pred CccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 002963 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (862)
Q Consensus 447 N~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (862)
.++...+. +-.++- ....+.+..+.+ .+.. ...+.|++.. .+|+ ++++.|=++.. . .+...
T Consensus 109 ~P~i~~~~-l~~l~~-~~~~~~~~~i~~-~~~~-~~~~~g~~~~---~~g~------v~~~~ek~~~~-~----~~~~~- 169 (446)
T PRK14353 109 TPLITAET-LARLRE-RLADGADVVVLG-FRAA-DPTGYGRLIV---KGGR------LVAIVEEKDAS-D----EERAI- 169 (446)
T ss_pred cccCCHHH-HHHHHH-hHhcCCcEEEEE-EEeC-CCCcceEEEE---CCCe------EEEEEECCCCC-h----HHhhc-
Confidence 97654421 212232 223344544443 3322 2235666643 3554 34444422221 0 00000
Q ss_pred ccCccceeeeEEeHHHHHhhhc
Q 002963 527 ADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 527 S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
+-.|+..++|+-+.+.+.++
T Consensus 170 --~~~~~Giy~~~~~~l~~~l~ 189 (446)
T PRK14353 170 --TLCNSGVMAADGADALALLD 189 (446)
T ss_pred --eEEEEEEEEEEHHHHHHHHH
Confidence 23488999999887766654
No 33
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=97.05 E-value=0.022 Score=65.59 Aligned_cols=215 Identities=14% Similarity=0.140 Sum_probs=121.5
Q ss_pred CcEEEEEecCCccccCC---CCCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCc
Q 002963 287 PELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 362 (862)
Q Consensus 287 ~kvAvVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~T 362 (862)
.++..|+||||.||||. ...||. ++|+. |+ +++++.++.+.. .| .=-++|.|.. .
T Consensus 2 ~~~~aIIlA~G~gtRl~PlT~~~PK~--llpv~-----g~~plId~~L~~l~~--------~G---i~~i~iv~~~---~ 60 (436)
T PLN02241 2 KSVAAIILGGGAGTRLFPLTKRRAKP--AVPIG-----GNYRLIDIPMSNCIN--------SG---INKIYVLTQF---N 60 (436)
T ss_pred CceEEEEEeCCCCCcchhhhcCCccc--ceEeC-----CcceEehHHHHHHHh--------CC---CCEEEEEecc---C
Confidence 46788999999999998 688999 99874 54 899998887755 34 2235777776 7
Q ss_pred hHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEE
Q 002963 363 HERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATV 442 (862)
Q Consensus 363 he~T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V 442 (862)
.+...++|++..+|+.... |.++.+..+.. ... ..-...|.|.||-...... .+++...++-+++.|
T Consensus 61 ~~~i~~~l~~~~~~~~~~~----~~~~~~~i~~~------~q~-~~~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv 127 (436)
T PLN02241 61 SASLNRHLSRAYNFGNGGN----FGDGFVEVLAA------TQT-PGEKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLI 127 (436)
T ss_pred HHHHHHHHhccCCCCCCcc----cCCCCEEEcCC------ccc-CCCCccccCcHHHHHHHHH--HHHhcccCCCCEEEE
Confidence 7889999985433443111 11111111110 000 0011257888775543321 233222223578999
Q ss_pred EeCCCccccccHhHHHHhhhhhhcCCceeEEEeeecCC-CCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCC-
Q 002963 443 RQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSG-ATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPF- 520 (862)
Q Consensus 443 ~qvDN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~-~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~- 520 (862)
.+-|++ ...|. -.++-++..+++++.+.+ .+... ....-|++.. ..+| .++++.|-|... .....
T Consensus 128 ~~gD~v-~~~dl--~~ll~~h~~~~a~~ti~~-~~v~~~~~~~ygvv~~--d~~~------~v~~~~Ekp~~~-~~~~~~ 194 (436)
T PLN02241 128 LSGDHL-YRMDY--MDFVQKHRESGADITIAC-LPVDESRASDFGLMKI--DDTG------RIIEFSEKPKGD-ELKAMQ 194 (436)
T ss_pred ecCCeE-EccCH--HHHHHHHHHcCCCEEEEE-EecchhhcCcceEEEE--CCCC------CEEEEEECCCCc-cccccc
Confidence 999985 44543 344666667777765543 33221 1245677753 1233 466777665331 00000
Q ss_pred CCCCc--------cc-cCccceeeeEEeHHHHHhhhc
Q 002963 521 SSNGL--------QA-DFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 521 ~dg~l--------~S-~F~~Ninn~~fsL~~l~~vl~ 548 (862)
-+.+. .. ..-.|+..++|+-+.+..+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~ 231 (436)
T PLN02241 195 VDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLR 231 (436)
T ss_pred ccccccccccccccccceEEEeEEEEEEHHHHHHHHH
Confidence 00000 00 122499999999999887765
No 34
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.03 E-value=0.025 Score=65.26 Aligned_cols=185 Identities=14% Similarity=0.110 Sum_probs=105.6
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
++..|+||||.||||+...||. ++|+ .|++++++.++++.+. | .-.++|.|+. ..+...
T Consensus 3 ~~~avIlAaG~g~Rl~~~~pK~--l~pi-----~g~pli~~~l~~l~~~--------g---i~~iiiv~~~---~~~~i~ 61 (459)
T PRK14355 3 NLAAIILAAGKGTRMKSDLVKV--MHPL-----AGRPMVSWPVAAAREA--------G---AGRIVLVVGH---QAEKVR 61 (459)
T ss_pred cceEEEEcCCCCcccCCCCCce--ecee-----CCccHHHHHHHHHHhc--------C---CCeEEEEECC---CHHHHH
Confidence 5677899999999999889999 8887 5789999988877652 3 2367888887 566677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~qvD 446 (862)
++|.+.. .+.+..|. .|-|.|+ ++.++ +.+ +..-+++.|.+.|
T Consensus 62 ~~~~~~~-------~i~~~~~~----------------------~~~Gt~~al~~a~------~~l-~~~~~~vlv~~gD 105 (459)
T PRK14355 62 EHFAGDG-------DVSFALQE----------------------EQLGTGHAVACAA------PAL-DGFSGTVLILCGD 105 (459)
T ss_pred HHhccCC-------ceEEEecC----------------------CCCCHHHHHHHHH------HHh-hccCCcEEEEECC
Confidence 7765311 23222221 1335554 33333 222 2224789999999
Q ss_pred CccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 002963 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (862)
Q Consensus 447 N~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (862)
+++...+ .+-.++-.+...+.++.+.. .+...+ ..-|++.. ..+|+ ++++.|=++.. ... . .
T Consensus 106 ~p~~~~~-~i~~l~~~~~~~~~~~~v~~-~~~~~~-~~~g~v~~--d~~g~------v~~~~ek~~~~-~~~---~-~-- 167 (459)
T PRK14355 106 VPLLRAE-TLQGMLAAHRATGAAVTVLT-ARLENP-FGYGRIVR--DADGR------VLRIVEEKDAT-PEE---R-S-- 167 (459)
T ss_pred ccCcCHH-HHHHHHHHHHhcCCcEEEEE-EEcCCC-CcCCEEEE--cCCCC------EEEEEEcCCCC-hhH---h-h--
Confidence 9865431 11123444444454444332 333333 23455532 13444 34444322221 000 0 0
Q ss_pred ccCccceeeeEEeHHHHHhhhc
Q 002963 527 ADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 527 S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
.+..|++.++|+-+++.+.+.
T Consensus 168 -~~~~~~Giy~~~~~~l~~~l~ 188 (459)
T PRK14355 168 -IREVNSGIYCVEAAFLFDAIG 188 (459)
T ss_pred -ccEEEEEEEEEeHHHHHHHHH
Confidence 123599999999988766554
No 35
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=97.02 E-value=0.021 Score=62.46 Aligned_cols=177 Identities=20% Similarity=0.228 Sum_probs=102.9
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 291 vVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
.|+||||.||||.- ..||- ++|| .||+++++.++.+... | .-.++|.|.. ...+...
T Consensus 2 aIILAgG~GtRL~plT~~~pK~--Llpv-----~gkPmI~~~L~~l~~a--------G---i~~I~iv~~~--~~~~~~~ 61 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQ--LLPI-----YDKPMIYYPLSTLMLA--------G---IRDILIISTP--QDTPRFQ 61 (286)
T ss_pred EEEECCCCCccCCcccCCCCce--eeEE-----CCEEhHHHHHHHHHHC--------C---CCEEEEEecC--CcHHHHH
Confidence 47899999999974 78999 9988 5789999998887652 3 2245566665 3566778
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN 447 (862)
++|.....||+ ++.+..|. .|-|-|+-+....+ +.. -+-..+..-||
T Consensus 62 ~~lg~g~~~g~---~i~~~~q~----------------------~~~Gta~al~~a~~------~l~--~~~~~li~gD~ 108 (286)
T TIGR01207 62 QLLGDGSQWGV---NLSYAVQP----------------------SPDGLAQAFIIGED------FIG--GDPSALVLGDN 108 (286)
T ss_pred HHhccccccCc---eEEEEEcc----------------------CCCCHHHHHHHHHH------HhC--CCCEEEEECCE
Confidence 88877666775 34333332 35566554433221 221 13345557899
Q ss_pred ccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccc
Q 002963 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 527 (862)
Q Consensus 448 ~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S 527 (862)
++...| +-.++-.+...+.++.+.+ .+...+ +.-|++.. ..+|+ ++++.|=|... . |
T Consensus 109 i~~~~~--l~~ll~~~~~~~~~~ti~~-~~v~~p-~~yGvv~~--d~~g~------V~~i~EKp~~~---------~--s 165 (286)
T TIGR01207 109 IFYGHD--LSDLLKRAAARESGATVFA-YQVSDP-ERYGVVEF--DSNGR------AISIEEKPAQP---------K--S 165 (286)
T ss_pred eccccC--HHHHHHHHHhcCCCcEEEE-EEccCH-HHCceEEE--CCCCe------EEEEEECCCCC---------C--C
Confidence 875544 2233445555555555443 333323 35677753 13454 33443322110 0 1
Q ss_pred cCccceeeeEEeHHHHH
Q 002963 528 DFPANTNILYVDLASAE 544 (862)
Q Consensus 528 ~F~~Ninn~~fsL~~l~ 544 (862)
. .+|+..++|+-+.++
T Consensus 166 ~-~~~~GiYi~~~~i~~ 181 (286)
T TIGR01207 166 N-YAVTGLYFYDNRVVE 181 (286)
T ss_pred C-EEEEEEEEEchHHHH
Confidence 1 268999999977543
No 36
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=96.98 E-value=0.015 Score=60.84 Aligned_cols=177 Identities=17% Similarity=0.124 Sum_probs=100.3
Q ss_pred EEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHH
Q 002963 290 GEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (862)
Q Consensus 290 AvVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T 366 (862)
-.|+||||.||||+- ..||. ++|+ .|+++++..++.+.+ .| .-.++|.++. ...+..
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~--llpv-----~~~pli~~~l~~l~~--------~g---i~~i~vv~~~--~~~~~~ 61 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQ--LLPV-----YDKPMIYYPLSTLML--------AG---IREILIISTP--EDLPLF 61 (240)
T ss_pred eEEEEcCcCcccCCccccCCCce--eeEE-----CCEEhHHHHHHHHHH--------CC---CCEEEEEeCc--chHHHH
Confidence 368999999999975 78999 9987 579999999887754 23 2356677775 345677
Q ss_pred HHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeC
Q 002963 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQV 445 (862)
Q Consensus 367 ~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~qv 445 (862)
.++|.....+|+ +|.+-. ...|.|-|+ ++.++. .+ . + +...|.+.
T Consensus 62 ~~~l~~~~~~~~---~i~~~~----------------------~~~~~G~~~al~~a~~---~~----~-~-~~~lv~~g 107 (240)
T cd02538 62 KELLGDGSDLGI---RITYAV----------------------QPKPGGLAQAFIIGEE---FI----G-D-DPVCLILG 107 (240)
T ss_pred HHHHhcccccCc---eEEEee----------------------CCCCCCHHHHHHHHHH---hc----C-C-CCEEEEEC
Confidence 888876555543 121100 012445544 332221 11 1 1 44566678
Q ss_pred CCccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCc
Q 002963 446 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGL 525 (862)
Q Consensus 446 DN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l 525 (862)
|+++...| +-.++-.+..++.++.+.+ .+... .+.-|++.. ..+|+ ++++.|=|... ..
T Consensus 108 D~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~g~v~~--d~~g~------v~~~~ekp~~~---------~~ 166 (240)
T cd02538 108 DNIFYGQG--LSPILQRAAAQKEGATVFG-YEVND-PERYGVVEF--DENGR------VLSIEEKPKKP---------KS 166 (240)
T ss_pred CEEEccHH--HHHHHHHHHhcCCCcEEEE-EECCc-hhcCceEEe--cCCCc------EEEEEECCCCC---------CC
Confidence 88754432 2234555555566666554 33222 234567653 13454 34443322211 00
Q ss_pred cccCccceeeeEEeHHHHH
Q 002963 526 QADFPANTNILYVDLASAE 544 (862)
Q Consensus 526 ~S~F~~Ninn~~fsL~~l~ 544 (862)
...|++.++|+-+.++
T Consensus 167 ---~~~~~Giyi~~~~~l~ 182 (240)
T cd02538 167 ---NYAVTGLYFYDNDVFE 182 (240)
T ss_pred ---CeEEEEEEEECHHHHH
Confidence 1258999999987663
No 37
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=96.96 E-value=0.011 Score=67.24 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=47.5
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHHHHH
Q 002963 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 370 (862)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~fl 370 (862)
.|+||||.|||||...||- ++|+ .|+++++..++++.+. | ...++|.++. ..+.+.+++
T Consensus 3 aiIlAaG~g~R~~~~~pK~--l~~i-----~gkpli~~~l~~l~~~--------g---~~~iiiv~~~---~~~~i~~~~ 61 (451)
T TIGR01173 3 VVILAAGKGTRMKSDLPKV--LHPL-----AGKPMLEHVIDAARAL--------G---PQKIHVVYGH---GAEQVRKAL 61 (451)
T ss_pred EEEEcCCCCcccCCCCchh--hcee-----CCccHHHHHHHHHHhC--------C---CCeEEEEECC---CHHHHHHHh
Confidence 5888999999999888998 8876 6899999988877552 3 2356788887 456677776
Q ss_pred HH
Q 002963 371 ER 372 (862)
Q Consensus 371 e~ 372 (862)
.+
T Consensus 62 ~~ 63 (451)
T TIGR01173 62 AN 63 (451)
T ss_pred cC
Confidence 64
No 38
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=96.96 E-value=0.01 Score=60.66 Aligned_cols=136 Identities=12% Similarity=0.147 Sum_probs=82.8
Q ss_pred EEecCCccccCC---CCCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 292 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 292 VlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
|+||||.||||. ...||. ++|+ .|+ +++++.++.+... | .-.++|.|+. ..+...
T Consensus 2 vILAaG~gtRl~plt~~~pK~--llpv-----~g~~pli~~~l~~l~~~--------g---i~~iivv~~~---~~~~i~ 60 (200)
T cd02508 2 IILAGGEGTRLSPLTKKRAKP--AVPF-----GGRYRLIDFPLSNMVNS--------G---IRNVGVLTQY---KSRSLN 60 (200)
T ss_pred EEeCCCCCcccchhhcCCcce--eeEE-----CCeeeeHHHHHHHHHHC--------C---CCEEEEEeCC---ChHHHH
Confidence 789999999996 478999 9987 577 9999999877662 3 3467888987 678888
Q ss_pred HHHHHhCCCCCCCC--ceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeC
Q 002963 368 SLCERLRWFGRGQS--SFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQV 445 (862)
Q Consensus 368 ~fle~n~yFGl~~~--qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qv 445 (862)
++|.+...+|++.. .+.+.. .....-.-.|-|.|+-..... +.+....-+.+.|...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~Gta~al~~a~-----~~i~~~~~~~~lv~~g 119 (200)
T cd02508 61 DHLGSGKEWDLDRKNGGLFILP----------------PQQRKGGDWYRGTADAIYQNL-----DYIERSDPEYVLILSG 119 (200)
T ss_pred HHHhCCCcccCCCCCCCEEEeC----------------cccCCCCCcccCcHHHHHHHH-----HHHHhCCCCEEEEecC
Confidence 99987666665421 121110 000001235667666443332 2233333477888899
Q ss_pred CCccccccHhHHHHhhhhhhcCCceeE
Q 002963 446 SNVVAATDLTLLALAGIGLHHGKKLGF 472 (862)
Q Consensus 446 DN~La~vDP~il~flG~~~~~~~~~~~ 472 (862)
|++ ...| +-.++-.+..+++++.+
T Consensus 120 D~v-~~~~--~~~~l~~~~~~~~~~t~ 143 (200)
T cd02508 120 DHI-YNMD--YREMLDFHIESGADITV 143 (200)
T ss_pred CEE-EecC--HHHHHHHHHHcCCCEEE
Confidence 984 3333 22335554444544433
No 39
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=96.95 E-value=0.039 Score=63.41 Aligned_cols=201 Identities=9% Similarity=0.056 Sum_probs=116.7
Q ss_pred CcEEEEEecCCccccCCC---CCCCCCceeeccccCCCCCc-chHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCc
Q 002963 287 PELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRT-LLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 362 (862)
Q Consensus 287 ~kvAvVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkT-lLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~T 362 (862)
.++..|+||||.||||.- ..||. ++|+ .|++ ++++.++++.. .| .-.++|.|.. .
T Consensus 14 ~~~~aVILAaG~GtRl~pLT~~~PK~--llpv-----~gkp~lI~~~l~~l~~--------~G---i~~i~vv~~~---~ 72 (425)
T PRK00725 14 RDTLALILAGGRGSRLKELTDKRAKP--AVYF-----GGKFRIIDFALSNCIN--------SG---IRRIGVLTQY---K 72 (425)
T ss_pred cceEEEEECCCCCCcchhhhCCCcce--eEEE-----CCEEEEhHHHHHHHHH--------CC---CCeEEEEecC---C
Confidence 578999999999999985 78999 9987 5786 99999888765 24 2356888886 7
Q ss_pred hHHHHHHHHHhCCCCCCCC----ceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHH-HHHHHhcCchHHHHHcCc
Q 002963 363 HERITSLCERLRWFGRGQS----SFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAI-WKLAHDKGIFKWFHDNGR 437 (862)
Q Consensus 363 he~T~~fle~n~yFGl~~~----qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdI-y~aL~~sGlLd~l~~~Gi 437 (862)
.+...++|.+. +++.+. .+.++.+. ......-.|-|-|+- +.++ +.+....-
T Consensus 73 ~~~i~~~~~~~--~~~~~~~~~~~i~i~~~~---------------~~~~~e~~~lGTa~al~~a~------~~l~~~~~ 129 (425)
T PRK00725 73 AHSLIRHIQRG--WSFFREELGEFVDLLPAQ---------------QRVDEENWYRGTADAVYQNL------DIIRRYDP 129 (425)
T ss_pred HHHHHHHHHhh--hcccccCCCCeEEEeCCc---------------ccCCCCccccCcHHHHHHHH------HHHHhcCC
Confidence 88888888752 232111 11111110 011112345676553 3333 23333334
Q ss_pred eEEEEEeCCCccccccHhHHHHhhhhhhcCCceeEEEeeecC-CCCcCceEEEEeecCCCccccceEEEEecccCccCCC
Q 002963 438 KGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGIT 516 (862)
Q Consensus 438 kyi~V~qvDN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~-~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~ 516 (862)
+++.|.+-|++. ..| +-.++-++...++++.+.+ .+.+ .....-|++.. ..+|+ ++++.|=|... .
T Consensus 130 d~~lVl~gD~l~-~~d--l~~ll~~h~~~~~~~tl~~-~~~~~~~~~~yG~v~~--d~~~~------V~~~~EKp~~~-~ 196 (425)
T PRK00725 130 KYVVILAGDHIY-KMD--YSRMLADHVESGADCTVAC-LEVPREEASAFGVMAV--DENDR------ITAFVEKPANP-P 196 (425)
T ss_pred CEEEEecCCeEe-ccC--HHHHHHHHHHcCCCEEEEE-EecchhhcccceEEEE--CCCCC------EEEEEECCCCc-c
Confidence 688999999843 343 2244666667777776664 2221 12234677754 12344 34444423221 0
Q ss_pred CCCCCCCCccccCccceeeeEEeHHHHHhhhc
Q 002963 517 RGPFSSNGLQADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 517 ~~~~~dg~l~S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
. ...... .+-.|+..++|+-+.|.+.+.
T Consensus 197 ~--~~~~~~--~~l~n~GIYi~~~~~L~~~L~ 224 (425)
T PRK00725 197 A--MPGDPD--KSLASMGIYVFNADYLYELLE 224 (425)
T ss_pred c--cccCcc--ceEEEeeEEEEeHHHHHHHHH
Confidence 0 000100 134699999999999887664
No 40
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=96.90 E-value=0.004 Score=64.83 Aligned_cols=185 Identities=16% Similarity=0.167 Sum_probs=110.3
Q ss_pred EEecCCccccCC---CCCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 292 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 292 VlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
|+||||.||||. ...||- ++|+ .|+ +++++.++++... | +.-.++|.+.. ..+...
T Consensus 3 vIla~G~GtRl~plt~~~pK~--ll~i-----~g~~pli~~~l~~l~~~--------g--~~~ii~V~~~~---~~~~i~ 62 (248)
T PF00483_consen 3 VILAGGKGTRLRPLTDTIPKP--LLPI-----GGKYPLIDYVLENLANA--------G--IKEIIVVVNGY---KEEQIE 62 (248)
T ss_dssp EEEEESCCGGGTTTTTTSSGG--GSEE-----TTEEEHHHHHHHHHHHT--------T--CSEEEEEEETT---THHHHH
T ss_pred EEECCCCCccCchhhhccccc--ccee-----cCCCcchhhhhhhhccc--------C--CceEEEEEeec---cccccc
Confidence 567999999997 678998 9887 466 9999999988763 3 33345666655 677888
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcC-ceEEEEEeCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNG-RKGATVRQVS 446 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~G-ikyi~V~qvD 446 (862)
+++++...+++ +|.+..|+ .|.|.|+-...+ .+.+.... -+++.|.+.|
T Consensus 63 ~~~~~~~~~~~---~i~~i~~~----------------------~~~Gta~al~~a-----~~~i~~~~~~~~~lv~~gD 112 (248)
T PF00483_consen 63 EHLGSGYKFGV---KIEYIVQP----------------------EPLGTAGALLQA-----LDFIEEEDDDEDFLVLNGD 112 (248)
T ss_dssp HHHTTSGGGTE---EEEEEEES----------------------SSSCHHHHHHHT-----HHHHTTSEE-SEEEEETTE
T ss_pred ccccccccccc---cceeeecc----------------------cccchhHHHHHH-----HHHhhhccccceEEEEecc
Confidence 99988765552 23232221 111444433322 22222222 3579999999
Q ss_pred CccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 002963 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (862)
Q Consensus 447 N~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (862)
++.-. | +..++-.+...++++.+.+.........+-|++.. ..+|+ |++.-|=|..... +
T Consensus 113 ~i~~~-~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~--d~~~~------V~~~~EKP~~~~~-------~-- 172 (248)
T PF00483_consen 113 IIFDD-D--LQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEV--DEDGR------VIRIVEKPDNPNA-------S-- 172 (248)
T ss_dssp EEEST-T--HHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEE--ETTSE------EEEEEESCSSHSH-------S--
T ss_pred ccccc-h--hhhHHHhhhccccccccccccccccccccceeeee--cccee------EEEEeccCccccc-------c--
Confidence 85544 3 33557777788876644432322333445566654 24454 4444443332100 0
Q ss_pred ccCccceeeeEEeHHHHHhhhc
Q 002963 527 ADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 527 S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
-..|+..++|+-+.+..+++
T Consensus 173 --~~~~~G~Y~~~~~~~~~~~~ 192 (248)
T PF00483_consen 173 --NLINTGIYIFKPEIFDFLLE 192 (248)
T ss_dssp --SEEEEEEEEEETHHHHHHHH
T ss_pred --eeccCceEEEcchHHHHHhh
Confidence 12489999999998887753
No 41
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=96.84 E-value=0.047 Score=60.70 Aligned_cols=176 Identities=18% Similarity=0.184 Sum_probs=101.4
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
.|+||||.||||+ ...||. ++|+ .|++++++.++.+.+. | .-.++|+|+. ...+...
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~--l~pv-----~g~pli~~~l~~l~~~--------g---i~~i~vv~~~--~~~~~i~ 61 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQ--LIPV-----ANKPILQYAIEDLAEA--------G---ITDIGIVVGP--VTGEEIK 61 (353)
T ss_pred EEEECCcCcCccCccccCCCcc--ccEE-----CCEeHHHHHHHHHHHC--------C---CCEEEEEeCC--CCHHHHH
Confidence 4789999999997 478999 8887 5889999998877542 3 2356788887 4778888
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN 447 (862)
++|.+...||+ ++.+..|. .|.|-++-..+... .+. + +-+.+.+-|+
T Consensus 62 ~~~~~~~~~~~---~~~~~~~~----------------------~~~G~~~al~~a~~-----~l~--~-~~~li~~gD~ 108 (353)
T TIGR01208 62 EIVGEGERFGA---KITYIVQG----------------------EPLGLAHAVYTARD-----FLG--D-DDFVVYLGDN 108 (353)
T ss_pred HHHhcccccCc---eEEEEECC----------------------CCCCHHHHHHHHHH-----hcC--C-CCEEEEECCe
Confidence 88887555554 23333221 24555543332221 221 1 2345556788
Q ss_pred ccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccc
Q 002963 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 527 (862)
Q Consensus 448 ~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S 527 (862)
++ ..| +-.++-.+..++++..+.+ .+...+ ..-|++.. .+|. .++++.|-|... . +
T Consensus 109 ~~-~~~--l~~l~~~~~~~~~d~ti~~-~~~~~~-~~~g~~~~---~~~~-----~v~~~~ekp~~~-------~-~--- 164 (353)
T TIGR01208 109 LI-QDG--ISRFVKSFEEKDYDALILL-TKVRDP-TAFGVAVL---EDGK-----RILKLVEKPKEP-------P-S--- 164 (353)
T ss_pred ec-Ccc--HHHHHHHHHhcCCCcEEEE-EECCCh-hhCeEEEE---cCCC-----cEEEEEECCCCC-------C-c---
Confidence 65 332 3344566666677766554 343333 23466543 3332 233333332221 0 0
Q ss_pred cCccceeeeEEeHHHHH
Q 002963 528 DFPANTNILYVDLASAE 544 (862)
Q Consensus 528 ~F~~Ninn~~fsL~~l~ 544 (862)
-..|+..++|+-.+++
T Consensus 165 -~~~~~Giy~~~~~l~~ 180 (353)
T TIGR01208 165 -NLAVVGLYMFRPLIFE 180 (353)
T ss_pred -cceEEEEEEECHHHHH
Confidence 1248999999985443
No 42
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=96.80 E-value=0.057 Score=55.63 Aligned_cols=66 Identities=20% Similarity=0.338 Sum_probs=49.8
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 291 vVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
.|+||||.||||+- ..||. ++|+ .|+++++..++.+.+. | .--++|.|.. ..+...
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~--llpi-----~g~~li~~~l~~l~~~--------g---i~~i~iv~~~---~~~~i~ 60 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKP--LVPV-----AGKPLIDHALDRLAAA--------G---IRRIVVNTHH---LADQIE 60 (221)
T ss_pred EEEEcCCCCCccccccCCCCCc--eeeE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEccC---CHHHHH
Confidence 47899999999975 68999 9887 5789999999888663 3 2234566655 788888
Q ss_pred HHHHHhCCCCC
Q 002963 368 SLCERLRWFGR 378 (862)
Q Consensus 368 ~fle~n~yFGl 378 (862)
+++.+ .++|+
T Consensus 61 ~~~~~-~~~~~ 70 (221)
T cd06422 61 AHLGD-SRFGL 70 (221)
T ss_pred HHHhc-ccCCc
Confidence 88876 44553
No 43
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=96.77 E-value=0.057 Score=56.28 Aligned_cols=180 Identities=14% Similarity=0.202 Sum_probs=104.3
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 291 vVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
.|+||||.||||+- ..||. ++|+ .|+++++..++.+... | .-.++|.|.. .++.+.
T Consensus 3 ~iIlAaG~g~R~~~lt~~~pK~--llpv-----~g~pli~~~l~~l~~~--------g---~~~v~iv~~~---~~~~~~ 61 (233)
T cd06425 3 ALILVGGYGTRLRPLTLTVPKP--LVEF-----CNKPMIEHQIEALAKA--------G---VKEIILAVNY---RPEDMV 61 (233)
T ss_pred EEEecCCCccccCccccCCCCc--cCeE-----CCcchHHHHHHHHHHC--------C---CcEEEEEeee---CHHHHH
Confidence 58899999999974 68998 8887 5789999999887663 3 2246788886 677888
Q ss_pred HHHHHhC-CCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 002963 368 SLCERLR-WFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (862)
Q Consensus 368 ~fle~n~-yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvD 446 (862)
+++.+.. .+|+ ++.+ + ....|.|-|+-..... +.+ ...-+-+.|.+.|
T Consensus 62 ~~l~~~~~~~~~---~i~~-------~---------------~~~~~~G~~~al~~a~-----~~~-~~~~~~~lv~~~D 110 (233)
T cd06425 62 PFLKEYEKKLGI---KITF-------S---------------IETEPLGTAGPLALAR-----DLL-GDDDEPFFVLNSD 110 (233)
T ss_pred HHHhcccccCCe---EEEe-------c---------------cCCCCCccHHHHHHHH-----HHh-ccCCCCEEEEeCC
Confidence 8887531 1222 1110 0 0112456544322221 122 2211225566777
Q ss_pred CccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecC-CCccccceEEEEecccCccCCCCCCCCCCCc
Q 002963 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNL-DGKWAYGLSCIEYTEFDKFGITRGPFSSNGL 525 (862)
Q Consensus 447 N~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~-dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l 525 (862)
++. ..| +-.++-++...+++..+.+ .+... ..+-|++.. .. +| .++++.|=|... .
T Consensus 111 ~~~-~~~--~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~g~v~~--d~~~~------~v~~~~ekp~~~-------~--- 167 (233)
T cd06425 111 VIC-DFP--LAELLDFHKKHGAEGTILV-TKVED-PSKYGVVVH--DENTG------RIERFVEKPKVF-------V--- 167 (233)
T ss_pred Eee-CCC--HHHHHHHHHHcCCCEEEEE-EEcCC-ccccCeEEE--cCCCC------EEEEEEECCCCC-------C---
Confidence 643 333 3345677777777766665 44332 235677753 12 34 356665543321 0
Q ss_pred cccCccceeeeEEeHHHHHhhh
Q 002963 526 QADFPANTNILYVDLASAELVG 547 (862)
Q Consensus 526 ~S~F~~Ninn~~fsL~~l~~vl 547 (862)
+ .-.|+..++|+-+.++.+.
T Consensus 168 -~-~~~~~Giyi~~~~~l~~l~ 187 (233)
T cd06425 168 -G-NKINAGIYILNPSVLDRIP 187 (233)
T ss_pred -C-CEEEEEEEEECHHHHHhcc
Confidence 1 1258999999988886543
No 44
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=96.76 E-value=0.15 Score=53.22 Aligned_cols=185 Identities=13% Similarity=0.146 Sum_probs=99.8
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
++..|+||||.|+||| ||. ++|+ .|++++++.++++.+.. | +.-++..+. ++.+.
T Consensus 1 ~~~~iIlA~g~s~R~~---~K~--l~~i-----~gkpll~~~l~~l~~~~-------~----i~~ivvv~~----~~~i~ 55 (239)
T cd02517 1 KVIVVIPARYASSRLP---GKP--LADI-----AGKPMIQHVYERAKKAK-------G----LDEVVVATD----DERIA 55 (239)
T ss_pred CEEEEEecCCCCCCCC---CCC--Cccc-----CCcCHHHHHHHHHHhCC-------C----CCEEEEECC----cHHHH
Confidence 4678999999999997 798 8876 69999999999887631 2 222333332 36777
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN 447 (862)
+++.+ +| +.+..+ . ...+.|.|++..++.. + ....+++.+.+.|+
T Consensus 56 ~~~~~---~~-----~~~~~~--------~------------~~~~~gt~~~~~~~~~------~-~~~~d~vlv~~gD~ 100 (239)
T cd02517 56 DAVES---FG-----GKVVMT--------S------------PDHPSGTDRIAEVAEK------L-DADDDIVVNVQGDE 100 (239)
T ss_pred HHHHH---cC-----CEEEEc--------C------------cccCchhHHHHHHHHh------c-CCCCCEEEEecCCC
Confidence 77764 22 111111 0 0124466666665532 1 11247899999999
Q ss_pred ccccccHhHHHHhhhhhhc-CCceeEEEeeecCCCC----cC-ceEEEEeecCCCccccceEEEEecccCccCCCCCCCC
Q 002963 448 VVAATDLTLLALAGIGLHH-GKKLGFASCKRSSGAT----EG-INVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS 521 (862)
Q Consensus 448 ~La~vDP~il~flG~~~~~-~~~~~~~~vvRK~~~~----E~-vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~ 521 (862)
++...+ .+-.++-.+... +.++.+.+ ++...+. .+ .+++.. .||+ +++..+-+... +.+..
T Consensus 101 Pli~~~-~l~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~---~~~~------v~~~~~~~~~~--~~~~~ 167 (239)
T cd02517 101 PLIPPE-MIDQVVAALKDDPGVDMATLA-TPISDEEELFNPNVVKVVLD---KDGY------ALYFSRSPIPY--PRDSS 167 (239)
T ss_pred CCCCHH-HHHHHHHHHHhCCCCCEEEEE-EEcCCHHHccCCCCCEEEEC---CCCC------EEEecCCCCCC--CCCCC
Confidence 887641 111223332222 34444443 3322222 22 344432 4554 34554422110 01111
Q ss_pred CCCccccCccceeeeEEeHHHHHhhhc
Q 002963 522 SNGLQADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 522 dg~l~S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
+.. + .-.|+..+.|+-+.++.+.+
T Consensus 168 ~~~--~-~~~~~Giy~~~~~~~~~~~~ 191 (239)
T cd02517 168 EDF--P-YYKHIGIYAYRRDFLLRFAA 191 (239)
T ss_pred CCC--c-eeEEEEEEEECHHHHHHHHh
Confidence 101 1 12499999999999887654
No 45
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=96.72 E-value=0.043 Score=62.85 Aligned_cols=177 Identities=13% Similarity=0.075 Sum_probs=102.2
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHHHH
Q 002963 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 369 (862)
Q Consensus 290 AvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~f 369 (862)
-.|+||||.||||+...||- ++|+ .|++++++.++.+... + -.++|.|+. ..+.+.++
T Consensus 2 ~avIlA~G~gtRl~~~~pK~--l~~v-----~gkpli~~~l~~l~~~--------~----~~i~vv~~~---~~~~i~~~ 59 (448)
T PRK14357 2 RALVLAAGKGTRMKSKIPKV--LHKI-----SGKPMINWVIDTAKKV--------A----QKVGVVLGH---EAELVKKL 59 (448)
T ss_pred eEEEECCCCCccCCCCCCce--eeEE-----CCeeHHHHHHHHHHhc--------C----CcEEEEeCC---CHHHHHHh
Confidence 35889999999999888998 8887 6899999998876651 2 135666665 34555555
Q ss_pred HHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCCCc
Q 002963 370 CERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (862)
Q Consensus 370 le~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~qvDN~ 448 (862)
+.+ .+.++.|+ .|.|-++ ++.++. .++ .-+++++.+.|++
T Consensus 60 ~~~---------~~~~~~~~----------------------~~~g~~~ai~~a~~---~l~-----~~~~vlv~~gD~p 100 (448)
T PRK14357 60 LPE---------WVKIFLQE----------------------EQLGTAHAVMCARD---FIE-----PGDDLLILYGDVP 100 (448)
T ss_pred ccc---------ccEEEecC----------------------CCCChHHHHHHHHH---hcC-----cCCeEEEEeCCcc
Confidence 431 12233331 1224333 333332 121 1368999999998
Q ss_pred cccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcccc
Q 002963 449 VAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQAD 528 (862)
Q Consensus 449 La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S~ 528 (862)
+...+ .+-.++-.+...++++.+.+ .+...+ ..-|++.. .||+ +..+|...-+... . . .
T Consensus 101 ~i~~~-~i~~l~~~~~~~~~d~ti~~-~~~~~~-~~~g~v~~---d~g~----v~~~e~~~~~~~~------~--~---~ 159 (448)
T PRK14357 101 LISEN-TLKRLIEEHNRKGADVTILV-ADLEDP-TGYGRIIR---DGGK----YRIVEDKDAPEEE------K--K---I 159 (448)
T ss_pred cCCHH-HHHHHHHHHHhcCCeEEEEE-EEcCCC-CCcEEEEE---cCCe----EEEEECCCCChHH------h--c---C
Confidence 65431 12123455555566665554 333323 23466643 3666 5566643211110 0 0 0
Q ss_pred CccceeeeEEeHHHHHhhhc
Q 002963 529 FPANTNILYVDLASAELVGS 548 (862)
Q Consensus 529 F~~Ninn~~fsL~~l~~vl~ 548 (862)
+-.|+..++|+-+.+.+.+.
T Consensus 160 ~~~~~GiYv~~~~~l~~~~~ 179 (448)
T PRK14357 160 KEINTGIYVFSGDFLLEVLP 179 (448)
T ss_pred cEEEeEEEEEEHHHHHHHHH
Confidence 33599999999888877664
No 46
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=96.65 E-value=0.087 Score=55.89 Aligned_cols=182 Identities=12% Similarity=0.130 Sum_probs=102.6
Q ss_pred EEecCC--ccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHH
Q 002963 292 IYPLGG--SADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (862)
Q Consensus 292 VlLAGG--lGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T 366 (862)
|+|||| .||||.- ..||. ++|+ .|+++++..++.+..+ .| .--++|.+.. ..+..
T Consensus 2 iIla~G~~~GtRl~plt~~~PK~--llpv-----~g~plI~~~l~~l~~~-------~g---i~~i~iv~~~---~~~~i 61 (257)
T cd06428 2 VILVGGPQKGTRFRPLSLDVPKP--LFPV-----AGKPMIHHHIEACAKV-------PD---LKEVLLIGFY---PESVF 61 (257)
T ss_pred EEEccCCCCCcccCCccCCCCcc--cCeE-----CCeeHHHHHHHHHHhc-------CC---CcEEEEEecC---CHHHH
Confidence 677888 8999986 78999 8887 5789999988877653 13 1234566665 67788
Q ss_pred HHHHHHhC-CCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeC
Q 002963 367 TSLCERLR-WFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQV 445 (862)
Q Consensus 367 ~~fle~n~-yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qv 445 (862)
.+++.+.. .+|+ .|.+..| ..|-|-|+-..... +.+....-+++.|.+.
T Consensus 62 ~~~l~~~~~~~~~---~i~~~~~----------------------~~~~Gt~~al~~a~-----~~l~~~~~~~~lv~~g 111 (257)
T cd06428 62 SDFISDAQQEFNV---PIRYLQE----------------------YKPLGTAGGLYHFR-----DQILAGNPSAFFVLNA 111 (257)
T ss_pred HHHHHhcccccCc---eEEEecC----------------------CccCCcHHHHHHHH-----HHhhccCCCCEEEEcC
Confidence 88887642 2332 2222111 12344444322221 2222223467889999
Q ss_pred CCccccccHhHHHHhhhhhhcCCceeEEEeeecC-CCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCC
Q 002963 446 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNG 524 (862)
Q Consensus 446 DN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~-~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~ 524 (862)
|++ ..+|. -.++-++...++++.+.+ .+.. .....-|++.. ...+|+ +.++.|=|... . +
T Consensus 112 D~~-~~~dl--~~~~~~h~~~~~~~tl~~-~~~~~~~~~~yg~v~~-d~~~g~------v~~~~Ekp~~~-----~---~ 172 (257)
T cd06428 112 DVC-CDFPL--QELLEFHKKHGASGTILG-TEASREQASNYGCIVE-DPSTGE------VLHYVEKPETF-----V---S 172 (257)
T ss_pred Cee-cCCCH--HHHHHHHHHcCCCEEEEE-EEccccccccccEEEE-eCCCCe------EEEEEeCCCCc-----c---c
Confidence 987 33442 244667667777766554 3321 11233567643 002344 33444322211 0 0
Q ss_pred ccccCccceeeeEEeHHHHHhh
Q 002963 525 LQADFPANTNILYVDLASAELV 546 (862)
Q Consensus 525 l~S~F~~Ninn~~fsL~~l~~v 546 (862)
...|+..++|+-+.+..+
T Consensus 173 ----~~~~~Giyi~~~~~~~~i 190 (257)
T cd06428 173 ----DLINCGVYLFSPEIFDTI 190 (257)
T ss_pred ----ceEEEEEEEECHHHHHHH
Confidence 236999999999877544
No 47
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=96.63 E-value=0.053 Score=60.31 Aligned_cols=196 Identities=12% Similarity=0.113 Sum_probs=106.5
Q ss_pred EEecCCccccCCC---CCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 292 IYPLGGSADRLGL---VDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 292 VlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
|+||||.||||+- +.||. ++|+ .|+ +++++.++.+... | .-.++|.|.. ..+...
T Consensus 2 iILAaG~gtRl~plt~~~pK~--llpv-----~g~~pli~~~l~~l~~~--------g---i~~i~iv~~~---~~~~i~ 60 (361)
T TIGR02091 2 MVLAGGRGSRLSPLTKRRAKP--AVPF-----GGKYRIIDFPLSNCINS--------G---IRRIGVLTQY---KSHSLN 60 (361)
T ss_pred EEeCCCCCCccchhhhCCccc--ccee-----cceeeEeeehhhhhhhc--------C---CceEEEEecc---ChHHHH
Confidence 7899999999983 68999 9987 578 7999998877653 3 2256788887 556788
Q ss_pred HHHHHhCCCCCCC---CceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEE
Q 002963 368 SLCERLRWFGRGQ---SSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVR 443 (862)
Q Consensus 368 ~fle~n~yFGl~~---~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~ 443 (862)
++|.+. +++.. ..+.++.+ . ....-...|.|.|+ ++.++. .+....-+++.|.
T Consensus 61 ~~~~~~--~~~~~~~~~~~~~~~~-~--------------~~~~~~~~~~Gt~~al~~a~~------~~~~~~~~~~lv~ 117 (361)
T TIGR02091 61 RHIQRG--WDFDGFIDGFVTLLPA-Q--------------QRESGTDWYQGTADAVYQNLD------LIEDYDPEYVLIL 117 (361)
T ss_pred HHHHhc--cCccCccCCCEEEeCC-c--------------ccCCCCccccCcHHHHHHHHH------HHHhcCCCEEEEe
Confidence 888752 23221 11211100 0 00011223467655 333332 2222234678888
Q ss_pred eCCCccccccHhHHHHhhhhhhcCCceeEEEeeecCC-CCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCC
Q 002963 444 QVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSG-ATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 522 (862)
Q Consensus 444 qvDN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~-~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~d 522 (862)
+-|++. ..| +..++-.+..+++++.+.+ .+.+. .....|++.. ..+|+ +.++.|=|... .....+
T Consensus 118 ~gD~l~-~~~--l~~~l~~~~~~~~~~ti~~-~~~~~~~~~~~g~v~~--d~~~~------v~~~~ekp~~~--~~~~~~ 183 (361)
T TIGR02091 118 SGDHIY-KMD--YEKMLDYHIESGADVTIAC-IPVPRKEASRFGVMQV--DEDGR------IVDFEEKPANP--PSIPGM 183 (361)
T ss_pred cCCEEE-cCC--HHHHHHHHHHcCCCEEEEE-EecChHhcccccEEEE--CCCCC------EEEEEECCCCc--cccccc
Confidence 999843 332 3233455445555544443 33321 2334677753 12333 44555433111 000000
Q ss_pred CCccccCccceeeeEEeHHHHHhhhc
Q 002963 523 NGLQADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 523 g~l~S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
.. .+..|+..++|+-+.+.+.++
T Consensus 184 -~~--~~~~~~Giyi~~~~~l~~~l~ 206 (361)
T TIGR02091 184 -PD--FALASMGIYIFDKDVLKELLE 206 (361)
T ss_pred -cc--ccEEeeeEEEEcHHHHHHHHH
Confidence 11 134599999999998876654
No 48
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=96.51 E-value=0.0039 Score=63.80 Aligned_cols=61 Identities=21% Similarity=0.402 Sum_probs=47.9
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHHHH
Q 002963 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 369 (862)
Q Consensus 290 AvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~f 369 (862)
..|+||||.|||||. .||. ++++ .|++++++.++.+... + .-.+++-|+. .++.|..+
T Consensus 2 ~aIILAgG~gsRmg~-~~K~--Ll~i-----~GkplI~~vi~~l~~~--------~---i~~I~Vv~~~---~~~~~~~~ 59 (183)
T TIGR00454 2 DALIMAGGKGTRLGG-VEKP--LIEV-----CGRCLIDHVLSPLLKS--------K---VNNIIIATSP---HTPKTEEY 59 (183)
T ss_pred eEEEECCccCccCCC-CCce--EeEE-----CCEEHHHHHHHHHHhC--------C---CCEEEEEeCC---CHHHHHHH
Confidence 458999999999985 7898 8876 6899999999888652 1 1246777886 67788888
Q ss_pred HHH
Q 002963 370 CER 372 (862)
Q Consensus 370 le~ 372 (862)
+++
T Consensus 60 l~~ 62 (183)
T TIGR00454 60 INS 62 (183)
T ss_pred Hhh
Confidence 865
No 49
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=96.48 E-value=0.1 Score=55.27 Aligned_cols=190 Identities=13% Similarity=0.123 Sum_probs=102.2
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
+|+||||.||||. ...||. ++|+ .|+++++..++.+.+ .| .-.++|-++. ..+.+.
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~--llpv-----~~~p~i~~~~~~~~~--------~g---i~~i~iv~~~---~~~~i~ 59 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKP--MVEI-----GGRPILWHIMKIYSH--------YG---HNDFILCLGY---KGHVIK 59 (253)
T ss_pred CEEEecCCccccCCccCCCCce--EEEE-----CCEEHHHHHHHHHHh--------CC---CceEEEECCC---CHHHHH
Confidence 3789999999997 468999 9987 578899887666644 23 2246777776 678899
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCc----cccCCCCcH-HHHHHHhcCchHHHHHcCceEEEE
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAP----VCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATV 442 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i----~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V 442 (862)
+++++...||. ++.+-.|..--.+...+ .+++.+ ...|-|.|+ ++.++. .+ ..+ +++.+
T Consensus 60 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~t~~al~~a~~------~~-~~~-~~~lv 123 (253)
T cd02524 60 EYFLNYFLHNS---DVTIDLGTNRIELHNSD-----IEDWKVTLVDTGLNTMTGGRLKRVRR------YL-GDD-ETFML 123 (253)
T ss_pred HHHHhhhhhcC---ceeEeecccceeeeccc-----ccccceeecccCcccccHHHHHHHHH------hc-CCC-CeEEE
Confidence 99988665553 23221111000000000 001111 122455554 333331 11 111 78999
Q ss_pred EeCCCccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCC
Q 002963 443 RQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 522 (862)
Q Consensus 443 ~qvDN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~d 522 (862)
.+-|++. ..|- -.++-++...++++.+.+ ++ +...-|++.. ..+|+ ++++.+=+...
T Consensus 124 ~~gD~i~-~~dl--~~ll~~h~~~~~~~tl~~-~~---~~~~~g~v~~--d~~g~------V~~~~ekp~~~-------- 180 (253)
T cd02524 124 TYGDGVS-DVNI--NALIEFHRSHGKLATVTA-VH---PPGRFGELDL--DDDGQ------VTSFTEKPQGD-------- 180 (253)
T ss_pred EcCCEEE-CCCH--HHHHHHHHHcCCCEEEEE-ec---CCCcccEEEE--CCCCC------EEEEEECCCCC--------
Confidence 9999864 3332 233455555666665543 33 2233466643 13454 33444322110
Q ss_pred CCccccCccceeeeEEeHHHHHh
Q 002963 523 NGLQADFPANTNILYVDLASAEL 545 (862)
Q Consensus 523 g~l~S~F~~Ninn~~fsL~~l~~ 545 (862)
+ -..|++.++|+-+.++.
T Consensus 181 -~----~~i~~Giyi~~~~l~~~ 198 (253)
T cd02524 181 -G----GWINGGFFVLEPEVFDY 198 (253)
T ss_pred -C----ceEEEEEEEECHHHHHh
Confidence 0 12478889998766543
No 50
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=96.43 E-value=0.0045 Score=64.68 Aligned_cols=66 Identities=15% Similarity=0.277 Sum_probs=49.0
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
+++.|+||||.|+|||.+.||- ++++ .|++++++.+++++... ..-.++|.|++ .......
T Consensus 2 ~~~~iIlAaG~g~R~g~~~~K~--l~~l-----~gkpll~~~i~~~~~~~----------~~~~ivVv~~~--~~~~~~~ 62 (230)
T PRK13385 2 NYELIFLAAGQGKRMNAPLNKM--WLDL-----VGEPIFIHALRPFLADN----------RCSKIIIVTQA--QERKHVQ 62 (230)
T ss_pred ceEEEEECCeeccccCCCCCcc--eeEE-----CCeEHHHHHHHHHHcCC----------CCCEEEEEeCh--hhHHHHH
Confidence 3688999999999999888998 8876 69999999998776531 12356677766 3445555
Q ss_pred HHHHH
Q 002963 368 SLCER 372 (862)
Q Consensus 368 ~fle~ 372 (862)
+++++
T Consensus 63 ~~~~~ 67 (230)
T PRK13385 63 DLMKQ 67 (230)
T ss_pred HHHHh
Confidence 66665
No 51
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=96.40 E-value=0.21 Score=52.00 Aligned_cols=103 Identities=16% Similarity=0.179 Sum_probs=65.5
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
+++.|+||||.++||+ .|- ++|+ .|++++++.++++.+.. + .-.++|-| . ++.+.
T Consensus 2 ~~~aiIlA~g~s~R~~---~K~--l~~i-----~GkPli~~~i~~l~~~~-------~---~~~ivv~t-~----~~~i~ 56 (238)
T PRK13368 2 KVVVVIPARYGSSRLP---GKP--LLDI-----LGKPMIQHVYERAAQAA-------G---VEEVYVAT-D----DQRIE 56 (238)
T ss_pred cEEEEEecCCCCCCCC---CCc--cCcc-----CCcCHHHHHHHHHHhcC-------C---CCeEEEEC-C----hHHHH
Confidence 4678999999999996 487 7776 79999999998877631 1 12234433 2 36788
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN 447 (862)
+++++ +|. .+ +.+. + ..+.|.+++..++.. .+-+++.+.+.|+
T Consensus 57 ~~~~~---~~~---~v--~~~~--------~------------~~~~g~~~~~~a~~~---------~~~d~~lv~~~D~ 99 (238)
T PRK13368 57 DAVEA---FGG---KV--VMTS--------D------------DHLSGTDRLAEVMLK---------IEADIYINVQGDE 99 (238)
T ss_pred HHHHH---cCC---eE--EecC--------c------------cCCCccHHHHHHHHh---------CCCCEEEEEcCCc
Confidence 88875 332 11 1110 0 113455555444332 1567899999999
Q ss_pred ccccc
Q 002963 448 VVAAT 452 (862)
Q Consensus 448 ~La~v 452 (862)
++...
T Consensus 100 P~i~~ 104 (238)
T PRK13368 100 PMIRP 104 (238)
T ss_pred CcCCH
Confidence 98764
No 52
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=96.32 E-value=0.076 Score=61.15 Aligned_cols=180 Identities=14% Similarity=0.138 Sum_probs=99.6
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
++..|+||||.||||+...||- ++|+ .|+++++..++++.+. | .-.+++.++. ..+...
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~--l~~i-----~gkpli~~~i~~l~~~--------g---i~~i~vv~~~---~~~~i~ 63 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKV--LHTL-----AGKPMVQHVIDAANEL--------G---AQHVHLVYGH---GGDLLK 63 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChh--ccee-----CChhHHHHHHHHHHhc--------C---CCcEEEEECC---CHHHHH
Confidence 5788999999999999888998 8876 6899999988877442 3 2356677776 445555
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~qvD 446 (862)
+++.. ..+.+..|+ .+.|-|+ ++.++. .+ . .-+++.|...|
T Consensus 64 ~~~~~--------~~~~~i~~~----------------------~~~Gt~~al~~a~~------~l-~-~~~~vlV~~gD 105 (456)
T PRK09451 64 QTLAD--------EPLNWVLQA----------------------EQLGTGHAMQQAAP------FF-A-DDEDILMLYGD 105 (456)
T ss_pred Hhhcc--------CCcEEEECC----------------------CCCCcHHHHHHHHH------hh-c-cCCcEEEEeCC
Confidence 55532 122221111 2445444 444332 12 1 23689999999
Q ss_pred CccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 002963 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (862)
Q Consensus 447 N~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (862)
.++...+ .+-.++-.. ......+.+ .+-..+ ..-|++.. .+|+ -..++|....++. ...
T Consensus 106 ~P~i~~~-~i~~l~~~~--~~~~~~i~~-~~~~~~-~~yG~v~~---~~g~---V~~~~EKp~~~~~----------~~~ 164 (456)
T PRK09451 106 VPLISVE-TLQRLRDAK--PQGGIGLLT-VKLDNP-TGYGRITR---ENGK---VVGIVEQKDATDE----------QRQ 164 (456)
T ss_pred cccCCHH-HHHHHHHHh--hcCCEEEEE-EEcCCC-CCceEEEe---cCCe---EEEEEECCCCChH----------Hhh
Confidence 9875532 121223332 222223332 322223 23566533 4554 1234443222111 000
Q ss_pred ccCccceeeeEEeHHHHHhhhc
Q 002963 527 ADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 527 S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
+ -..|+..++|+-+.+.+.++
T Consensus 165 ~-~~~~~GiYi~~~~~l~~~l~ 185 (456)
T PRK09451 165 I-QEINTGILVANGADLKRWLA 185 (456)
T ss_pred c-cEEEEEEEEEEHHHHHHHHH
Confidence 0 01489999999888877664
No 53
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=96.22 E-value=0.0075 Score=61.71 Aligned_cols=61 Identities=20% Similarity=0.401 Sum_probs=48.4
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHHHH
Q 002963 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 369 (862)
Q Consensus 290 AvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~f 369 (862)
..|++|||.|||||. .-|- +++| +||.+++..++.+... .+ -+++-||. ++..|++|
T Consensus 2 ~~iiMAGGrGtRmg~-~EKP--lleV-----~GkpLI~~v~~al~~~-------~d-----~i~v~isp---~tp~t~~~ 58 (177)
T COG2266 2 MAIIMAGGRGTRMGR-PEKP--LLEV-----CGKPLIDRVLEALRKI-------VD-----EIIVAISP---HTPKTKEY 58 (177)
T ss_pred ceEEecCCcccccCC-CcCc--chhh-----CCccHHHHHHHHHHhh-------cC-----cEEEEeCC---CCHhHHHH
Confidence 468999999999996 4455 7766 8999999888776652 12 36788998 88999999
Q ss_pred HHHh
Q 002963 370 CERL 373 (862)
Q Consensus 370 le~n 373 (862)
+++-
T Consensus 59 ~~~~ 62 (177)
T COG2266 59 LESV 62 (177)
T ss_pred HHhc
Confidence 9984
No 54
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=96.20 E-value=0.17 Score=53.49 Aligned_cols=61 Identities=18% Similarity=0.308 Sum_probs=47.8
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 291 vVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
+|+||||.||||+- ..||. ++|+ .|++++++.++.+.. .| .-.++|+|.. ..+...
T Consensus 3 avIlAaG~gtRl~plt~~~pK~--llpi-----~g~pli~~~l~~l~~--------~g---i~~v~iv~~~---~~~~i~ 61 (260)
T TIGR01099 3 AVIPAAGLGTRFLPATKAIPKE--MLPI-----VDKPLIQYVVEEAVE--------AG---IEDILIVTGR---GKRAIE 61 (260)
T ss_pred EEEEcccCcccCCCcccCCCce--eEEE-----CCEEHHHHHHHHHHh--------CC---CCEEEEEeCC---cHHHHH
Confidence 58999999999974 78998 8887 578999998887654 23 2257888887 677788
Q ss_pred HHHHH
Q 002963 368 SLCER 372 (862)
Q Consensus 368 ~fle~ 372 (862)
++|.+
T Consensus 62 ~~~~~ 66 (260)
T TIGR01099 62 DHFDT 66 (260)
T ss_pred HHhcc
Confidence 88863
No 55
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=96.20 E-value=0.073 Score=62.19 Aligned_cols=195 Identities=13% Similarity=0.137 Sum_probs=101.7
Q ss_pred EEEecCCccccCC----CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHH
Q 002963 291 EIYPLGGSADRLG----LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (862)
Q Consensus 291 vVlLAGGlGTRLG----~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T 366 (862)
.|+||||.||||+ ...||- ++|+. .++|++|..++++..+ | +. ..+|.|+. .-....
T Consensus 3 ~vILAgG~GtRl~PlS~~~~PK~--~l~l~----g~~~ll~~tl~~l~~~--------~--~~-~iviv~~~--~~~~~~ 63 (468)
T TIGR01479 3 PVILAGGSGTRLWPLSRELYPKQ--FLALV----GDLTMLQQTLKRLAGL--------P--CS-SPLVICNE--EHRFIV 63 (468)
T ss_pred EEEecCcccccCCccccCCCCCc--eeEcC----CCCcHHHHHHHHHhcC--------C--Cc-CcEEecCH--HHHHHH
Confidence 5899999999998 347999 99985 5699999999887653 2 22 34477775 222344
Q ss_pred HHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH--HHHHHHhcCchHHHHH--cCceEEEE
Q 002963 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA--IWKLAHDKGIFKWFHD--NGRKGATV 442 (862)
Q Consensus 367 ~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGd--Iy~aL~~sGlLd~l~~--~Gikyi~V 442 (862)
.+.+++ ||++..+ +..| |. |-|-|+ .+.++ .+.+ .+=.++.|
T Consensus 64 ~~~l~~---~~~~~~~--~i~E---p~-------------------~~gTa~ai~~aa~-------~~~~~~~~~~~vlV 109 (468)
T TIGR01479 64 AEQLRE---IGKLASN--IILE---PV-------------------GRNTAPAIALAAL-------LAARRNGEDPLLLV 109 (468)
T ss_pred HHHHHH---cCCCcce--EEec---cc-------------------ccCchHHHHHHHH-------HHHHHHCCCcEEEE
Confidence 555554 3322111 2222 11 112221 11111 1212 23457899
Q ss_pred EeCCCccccccHhHHHHhhhh---hhcCCceeEEEeeecCCCCcCceEEEEeecCC--CccccceEEEEecccCccCCCC
Q 002963 443 RQVSNVVAATDLTLLALAGIG---LHHGKKLGFASCKRSSGATEGINVLIEKKNLD--GKWAYGLSCIEYTEFDKFGITR 517 (862)
Q Consensus 443 ~qvDN~La~vDP~il~flG~~---~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~d--Gk~~~~~~vVEYsEl~~~~~~~ 517 (862)
.+.|+++... ..|-.++-.+ ...+..+.+. ++...+..+-|.+......+ +. ..|..+-|=|+...+.
T Consensus 110 l~~D~~i~~~-~~f~~~l~~~~~~a~~~~lvtlg--i~p~~p~t~YGyI~~~~~~~~~~~----~~V~~f~EKP~~~~a~ 182 (468)
T TIGR01479 110 LAADHVITDE-DAFQAAVKLAMPAAAEGKLVTFG--IVPTHPETGYGYIRRGEPLAGEDV----YQVQRFVEKPDLATAQ 182 (468)
T ss_pred ecCceeecCH-HHHHHHHHHHHHHHhcCCEEEEE--ecCCCCCCCceEEEeCCccCCCCc----eEEeEEEECCChHHHH
Confidence 9999887532 1232233322 1223222222 33344556788885310001 11 2233333433331111
Q ss_pred CCCCCCCccccCccceeeeEEeHHHHHhhhcc
Q 002963 518 GPFSSNGLQADFPANTNILYVDLASAELVGSS 549 (862)
Q Consensus 518 ~~~~dg~l~S~F~~Ninn~~fsL~~l~~vl~~ 549 (862)
.-..+| .|-.|...+.|+.+.+.+.+++
T Consensus 183 ~~l~~g----~~~wNsGif~~~~~~ll~~l~~ 210 (468)
T TIGR01479 183 AYLESG----DYYWNSGMFLFRASRYLAELKK 210 (468)
T ss_pred HHHhcC----CeEEEeeEEEEEHHHHHHHHHH
Confidence 111122 1445999999999999999875
No 56
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=96.17 E-value=0.0077 Score=64.87 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=37.4
Q ss_pred CcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHH
Q 002963 287 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 336 (862)
Q Consensus 287 ~kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~l 336 (862)
.+++.|+||||.|+|||...||- .+++ .|++++++.++.+...
T Consensus 23 ~~i~aIILAAG~gsRmg~~~pKq--ll~l-----~Gkpll~~tl~~~~~~ 65 (252)
T PLN02728 23 KSVSVILLAGGVGKRMGANMPKQ--YLPL-----LGQPIALYSLYTFARM 65 (252)
T ss_pred CceEEEEEcccccccCCCCCCcc--eeEE-----CCeEHHHHHHHHHHhC
Confidence 36889999999999999889998 8876 6899999988877663
No 57
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=96.15 E-value=0.063 Score=55.64 Aligned_cols=130 Identities=15% Similarity=0.171 Sum_probs=76.4
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
.|+||||.|+||+ ...||. ++|+ .|++++++.++.+.+. | .-.++|.+.. .-.+.+.
T Consensus 3 aVILAgG~g~R~~plt~~~pK~--Llpv-----~g~pli~~~l~~l~~~--------g---~~~iivv~~~--~~~~~i~ 62 (214)
T cd04198 3 AVILAGGGGSRLYPLTDNIPKA--LLPV-----ANKPMIWYPLDWLEKA--------G---FEDVIVVVPE--EEQAEIS 62 (214)
T ss_pred EEEEeCCCCCcCCccccCCCcc--cCEE-----CCeeHHHHHHHHHHHC--------C---CCeEEEEECH--HHHHHHH
Confidence 4669999999998 578999 9887 5789999988887652 3 2245677775 2345678
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN 447 (862)
+++++..+ .........+ + ....+-|-|+..+...+. + .+.+.|.+.|.
T Consensus 63 ~~l~~~~~-~~~~~~~~~~-------~--------------~~~~~~gt~~al~~~~~~-i--------~~d~lv~~~D~ 111 (214)
T cd04198 63 TYLRSFPL-NLKQKLDEVT-------I--------------VLDEDMGTADSLRHIRKK-I--------KKDFLVLSCDL 111 (214)
T ss_pred HHHHhccc-ccCcceeEEE-------e--------------cCCCCcChHHHHHHHHhh-c--------CCCEEEEeCcc
Confidence 88876421 0000000000 0 012467888877776653 1 24466677774
Q ss_pred ccccccHhHHHHhhhhhhcCCceeEEE
Q 002963 448 VVAATDLTLLALAGIGLHHGKKLGFAS 474 (862)
Q Consensus 448 ~La~vDP~il~flG~~~~~~~~~~~~~ 474 (862)
+ ...|. ..++-.+...++.+.+..
T Consensus 112 i-~~~~l--~~~l~~h~~~~~~~t~~~ 135 (214)
T cd04198 112 I-TDLPL--IELVDLHRSHDASLTVLL 135 (214)
T ss_pred c-cccCH--HHHHHHHhccCCcEEEEE
Confidence 3 23332 234555555566655543
No 58
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=96.13 E-value=0.0059 Score=64.68 Aligned_cols=65 Identities=18% Similarity=0.284 Sum_probs=48.0
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHHH
Q 002963 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (862)
Q Consensus 289 vAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~ 368 (862)
+++|+||||.|+|||.+.||- .+++ .|++++++.++.+++.. ..--++|..++ +..+.+++
T Consensus 1 V~aIilAaG~G~R~g~~~pKQ--f~~l-----~Gkpvl~~tl~~f~~~~----------~i~~Ivvv~~~--~~~~~~~~ 61 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQ--FLEL-----GGKPVLEYTLEAFLASP----------EIDEIVVVVPP--EDIDYVEE 61 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GG--GSEE-----TTEEHHHHHHHHHHTTT----------TESEEEEEESG--GGHHHHHH
T ss_pred CEEEEeCCccchhcCcCCCCe--eeEE-----CCeEeHHHHHHHHhcCC----------CCCeEEEEecc--hhHHHHHH
Confidence 578999999999999999998 7776 79999999888876532 12235666666 56677777
Q ss_pred HHHH
Q 002963 369 LCER 372 (862)
Q Consensus 369 fle~ 372 (862)
++.+
T Consensus 62 ~~~~ 65 (221)
T PF01128_consen 62 LLSK 65 (221)
T ss_dssp HHHH
T ss_pred hhcC
Confidence 7776
No 59
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=96.05 E-value=0.19 Score=57.63 Aligned_cols=182 Identities=13% Similarity=0.141 Sum_probs=97.9
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHHH
Q 002963 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (862)
Q Consensus 289 vAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~ 368 (862)
...|+||||.||||+...||. ++|+ .|++++++.++++... | .-.++|.++. ..+...+
T Consensus 3 ~~avIlAaG~g~Rl~~~~pK~--ll~i-----~Gkpli~~~l~~l~~~--------g---i~~iivvv~~---~~~~i~~ 61 (458)
T PRK14354 3 RYAIILAAGKGTRMKSKLPKV--LHKV-----CGKPMVEHVVDSVKKA--------G---IDKIVTVVGH---GAEEVKE 61 (458)
T ss_pred ceEEEEeCCCCcccCCCCChh--hCEe-----CCccHHHHHHHHHHhC--------C---CCeEEEEeCC---CHHHHHH
Confidence 457899999999999888999 8887 5889999999887542 3 1245666665 4455555
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002963 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (862)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~qvDN 447 (862)
++.+ .+.+. ++. .+.|.++ ++.++. .+. ..-+++++.+.|+
T Consensus 62 ~~~~---------~~~~~----------------~~~------~~~g~~~al~~a~~------~l~-~~~d~vlv~~~D~ 103 (458)
T PRK14354 62 VLGD---------RSEFA----------------LQE------EQLGTGHAVMQAEE------FLA-DKEGTTLVICGDT 103 (458)
T ss_pred HhcC---------CcEEE----------------EcC------CCCCHHHHHHHHHH------Hhc-ccCCeEEEEECCc
Confidence 5432 11111 100 1334433 443332 221 1126899999999
Q ss_pred ccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccc
Q 002963 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 527 (862)
Q Consensus 448 ~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S 527 (862)
++...+ .+-.++-.....+++..+.+ .+...+ ...|++.. ..+|+ ....+|.....+. + ..
T Consensus 104 p~i~~~-~l~~li~~~~~~~~~~t~~~-~~~~~~-~~~g~v~~--d~~~~---V~~~~ek~~~~~~--------~-~~-- 164 (458)
T PRK14354 104 PLITAE-TLKNLIDFHEEHKAAATILT-AIAENP-TGYGRIIR--NENGE---VEKIVEQKDATEE--------E-KQ-- 164 (458)
T ss_pred cccCHH-HHHHHHHHHHhcCCceEEEE-EEcCCC-CCceEEEE--cCCCC---EEEEEECCCCChH--------H-hc--
Confidence 876542 11123333333344443333 222222 23555532 13444 1233333221111 0 00
Q ss_pred cCccceeeeEEeHHHHHhhhc
Q 002963 528 DFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 528 ~F~~Ninn~~fsL~~l~~vl~ 548 (862)
.+..|+..++|+-+.+.+.++
T Consensus 165 ~~~~~~Giy~f~~~~l~~~l~ 185 (458)
T PRK14354 165 IKEINTGTYCFDNKALFEALK 185 (458)
T ss_pred CcEEEEEEEEEEHHHHHHHHH
Confidence 133589999999887776654
No 60
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=96.03 E-value=0.49 Score=50.54 Aligned_cols=190 Identities=14% Similarity=0.146 Sum_probs=102.4
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 291 vVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
+|+||||.||||+- ..||. ++|+ .|+++++..++.+.+ .| .--++|.++. ..+...
T Consensus 2 avilaaG~gtRl~~~t~~~pK~--llpv-----~g~pii~~~l~~l~~--------~g---i~~i~iv~~~---~~~~i~ 60 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKP--MVEI-----GGKPILWHIMKIYSH--------HG---INDFIICCGY---KGYVIK 60 (254)
T ss_pred EEEEcCccccccCccccCCCcc--eeEE-----CCEEHHHHHHHHHHH--------CC---CCEEEEEcCC---CHHHHH
Confidence 47789999999964 38999 9987 589999887776654 23 2245666665 678888
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCccc-ccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWL-VMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~-l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvD 446 (862)
++|.+...+|. ..++. ++++.+.... ...+.. +. ......|-|.|+-.....+ .+ +-+.+.|.+-|
T Consensus 61 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~-~~~~~~~~~--~~~~~~~~gt~~al~~~~~--~i------~~e~flv~~gD 127 (254)
T TIGR02623 61 EYFANYFLHMS-DVTFH-MADNTMEVHH-KRVEPWRVT--LVDTGESTQTGGRLKRVRE--YL------DDEAFCFTYGD 127 (254)
T ss_pred HHHHhhhhccc-CeeEE-eccccccccc-ccCCcccee--eeecCCcCCcHHHHHHHHH--hc------CCCeEEEEeCC
Confidence 88876443321 11222 2232222221 111000 00 0011246777764433322 11 13567788999
Q ss_pred CccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 002963 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (862)
Q Consensus 447 N~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (862)
++ ...|.. .++-++...++++.+.. +.. ...-|++.. .+|+ +.++.|=| .. . +
T Consensus 128 ~i-~~~dl~--~~~~~h~~~~~d~tl~~-~~~---~~~yG~v~~---d~~~------V~~~~Ekp-~~-------~-~-- 180 (254)
T TIGR02623 128 GV-ADIDIK--ALIAFHRKHGKKATVTA-VQP---PGRFGALDL---EGEQ------VTSFQEKP-LG-------D-G-- 180 (254)
T ss_pred eE-ecCCHH--HHHHHHHHcCCCEEEEE-ecC---CCcccEEEE---CCCe------EEEEEeCC-CC-------C-C--
Confidence 85 344432 44556656667765543 322 234577753 2343 33333312 11 0 1
Q ss_pred ccCccceeeeEEeHHHH
Q 002963 527 ADFPANTNILYVDLASA 543 (862)
Q Consensus 527 S~F~~Ninn~~fsL~~l 543 (862)
-..|+..++|+-+.+
T Consensus 181 --~~i~~Giyi~~~~il 195 (254)
T TIGR02623 181 --GWINGGFFVLNPSVL 195 (254)
T ss_pred --CeEEEEEEEEcHHHH
Confidence 125899999998766
No 61
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=96.03 E-value=0.11 Score=53.93 Aligned_cols=61 Identities=30% Similarity=0.402 Sum_probs=45.4
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 291 vVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
.|+||||.||||+- ..||. ++|+ .|+++++..++.+... | .-.++|.|.. ..+...
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~--l~~~-----~g~~li~~~l~~l~~~--------g---i~~i~vv~~~---~~~~~~ 59 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKC--LLEI-----NGKPLLERQIETLKEA--------G---IDDIVIVTGY---KKEQIE 59 (229)
T ss_pred CEEEeccCccccchhhCCCCce--eeeE-----CCEEHHHHHHHHHHHC--------C---CceEEEEecc---CHHHHH
Confidence 37899999999975 46998 8887 5789999988877552 3 2246777776 566677
Q ss_pred HHHHH
Q 002963 368 SLCER 372 (862)
Q Consensus 368 ~fle~ 372 (862)
+++.+
T Consensus 60 ~~~~~ 64 (229)
T cd02523 60 ELLKK 64 (229)
T ss_pred HHHhc
Confidence 77764
No 62
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=95.98 E-value=0.016 Score=63.85 Aligned_cols=64 Identities=14% Similarity=0.343 Sum_probs=51.5
Q ss_pred cEEEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchH
Q 002963 288 ELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The 364 (862)
.+-+|+||||.||||. ..-||- |+|| .||+++++.++.+... | .--++|.|+. ..+
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKp--LvpV-----~gkPiI~~vl~~l~~~--------G---i~~ivivv~~---~~~ 61 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKE--MLPI-----VDKPMIQYIVDEIVAA--------G---IKEIVLVTHA---SKN 61 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCce--eeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEecC---ChH
Confidence 4668999999999998 477999 9987 5899999999888653 4 2357888886 777
Q ss_pred HHHHHHHH
Q 002963 365 RITSLCER 372 (862)
Q Consensus 365 ~T~~fle~ 372 (862)
...++|..
T Consensus 62 ~i~~~~~~ 69 (297)
T TIGR01105 62 AVENHFDT 69 (297)
T ss_pred HHHHHHhc
Confidence 88998864
No 63
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=95.98 E-value=0.014 Score=60.50 Aligned_cols=100 Identities=26% Similarity=0.397 Sum_probs=67.5
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
....|+||||+|.|| .+|. ++++ .|++++|+.++++... +. .++|.... +.+.
T Consensus 4 ~~~~vILAGG~srRm---~dK~--l~~~-----~g~~lie~v~~~L~~~-----------~~-~vvi~~~~---~~~~-- 56 (192)
T COG0746 4 PMTGVILAGGKSRRM---RDKA--LLPL-----NGRPLIEHVIDRLRPQ-----------VD-VVVISANR---NQGR-- 56 (192)
T ss_pred CceEEEecCCccccc---cccc--ccee-----CCeEHHHHHHHHhccc-----------CC-EEEEeCCC---chhh--
Confidence 567899999999999 8898 8876 7899999999887653 34 56666655 3221
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN 447 (862)
+..|| +|.+.|.. +|.|-+ .|++.-|..-+-+|++|..+|.
T Consensus 57 -----~~~~g-------------~~vv~D~~---------------~~~GPL------~Gi~~al~~~~~~~~~v~~~D~ 97 (192)
T COG0746 57 -----YAEFG-------------LPVVPDEL---------------PGFGPL------AGILAALRHFGTEWVLVLPCDM 97 (192)
T ss_pred -----hhccC-------------CceeecCC---------------CCCCCH------HHHHHHHHhCCCCeEEEEecCC
Confidence 22232 45554321 122211 2444555566689999999999
Q ss_pred cccccc
Q 002963 448 VVAATD 453 (862)
Q Consensus 448 ~La~vD 453 (862)
+....|
T Consensus 98 P~i~~~ 103 (192)
T COG0746 98 PFIPPE 103 (192)
T ss_pred CCCCHH
Confidence 999874
No 64
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.98 E-value=0.0093 Score=58.87 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=32.7
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 002963 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (862)
Q Consensus 289 vAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (862)
++.|+||||.|+|||- +|. ++++ .|+++++..++++..
T Consensus 1 ~~~vIlAgG~s~R~g~--~K~--l~~~-----~g~~li~~~i~~l~~ 38 (186)
T cd04182 1 IAAIILAAGRSSRMGG--NKL--LLPL-----DGKPLLRHALDAALA 38 (186)
T ss_pred CeEEEECCCCCCCCCC--Cce--eCee-----CCeeHHHHHHHHHHh
Confidence 3678999999999985 898 8876 799999999998765
No 65
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=95.88 E-value=0.0086 Score=61.58 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=33.9
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCC-CcchHHHHHHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCG-RTLLEGLIRDLQA 335 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sg-kTlLql~~e~I~~ 335 (862)
+++.|+||||+|+||| .+|. ++++ .| +|+++..++++..
T Consensus 8 ~i~~vILAgG~s~RmG--~~K~--ll~~-----~g~~~ll~~~i~~l~~ 47 (196)
T PRK00560 8 NIPCVILAGGKSSRMG--ENKA--LLPF-----GSYSSLLEYQYTRLLK 47 (196)
T ss_pred CceEEEECCcccccCC--CCce--EEEe-----CCCCcHHHHHHHHHHH
Confidence 7889999999999998 5788 8877 56 9999999998754
No 66
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=95.77 E-value=0.025 Score=60.52 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=54.6
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHHHH
Q 002963 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 369 (862)
Q Consensus 290 AvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~f 369 (862)
..|+||.|.|+|||-+.||. ++.+ .|+++++.+++++... | ..-++|.|+. ...+...+|
T Consensus 5 kavILAAG~GsRlg~~~PK~--Lvev-----~gr~ii~~~i~~L~~~--------g---i~e~vvV~~g--~~~~lve~~ 64 (239)
T COG1213 5 KAVILAAGFGSRLGPDIPKA--LVEV-----GGREIIYRTIENLAKA--------G---ITEFVVVTNG--YRADLVEEF 64 (239)
T ss_pred eEEEEecccccccCCCCCch--hhhc-----CCeEeHHHHHHHHHHc--------C---CceEEEEecc--chHHHHHHH
Confidence 46889999999999999999 8877 5999999988887653 2 4567999977 488888889
Q ss_pred HHHhCC
Q 002963 370 CERLRW 375 (862)
Q Consensus 370 le~n~y 375 (862)
+.++++
T Consensus 65 l~~~~~ 70 (239)
T COG1213 65 LKKYPF 70 (239)
T ss_pred HhcCCc
Confidence 888774
No 67
>PRK10122 GalU regulator GalF; Provisional
Probab=95.61 E-value=0.034 Score=61.18 Aligned_cols=64 Identities=14% Similarity=0.344 Sum_probs=51.6
Q ss_pred CcEEEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCch
Q 002963 287 PELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (862)
Q Consensus 287 ~kvAvVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~Th 363 (862)
.++.+|++|||.||||. ...||- ++|| .||+++++.++.+... | .--++|+|.. ..
T Consensus 2 ~~mkavIlAaG~GtRl~PlT~~~PK~--llpi-----~gkpiI~~~l~~l~~~--------G---i~~i~iv~~~---~~ 60 (297)
T PRK10122 2 TNLKAVIPVAGLGMHMLPATKAIPKE--MLPI-----VDKPMIQYIVDEIVAA--------G---IKEIVLVTHA---SK 60 (297)
T ss_pred CceEEEEECCcCCcccCcccCCCCce--eeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEcCC---Ch
Confidence 35778999999999998 578999 9987 5789999999888663 4 2356788876 77
Q ss_pred HHHHHHHH
Q 002963 364 ERITSLCE 371 (862)
Q Consensus 364 e~T~~fle 371 (862)
+...++|.
T Consensus 61 ~~i~~~~~ 68 (297)
T PRK10122 61 NAVENHFD 68 (297)
T ss_pred HHHHHHHh
Confidence 88888885
No 68
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=95.60 E-value=0.22 Score=50.96 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=32.7
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 336 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~l 336 (862)
++++|+||||.|+||+ .|- ++++ .|++++++.++.+++.
T Consensus 1 ~~~~iIlA~G~s~R~~---~K~--l~~l-----~Gkpll~~~l~~l~~~ 39 (223)
T cd02513 1 KILAIIPARGGSKGIP---GKN--IRPL-----GGKPLIAWTIEAALES 39 (223)
T ss_pred CeEEEEecCCCCCCCC---Ccc--cchh-----CCccHHHHHHHHHHhC
Confidence 5688999999999996 477 6655 7999999999988763
No 69
>PLN02917 CMP-KDO synthetase
Probab=95.53 E-value=0.24 Score=54.59 Aligned_cols=187 Identities=10% Similarity=0.064 Sum_probs=101.3
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
+++.|++|+|.++||| +|- ++++ .|++++++.++++.... .+..++... ..+.+.
T Consensus 47 ~i~aIIpA~G~SsR~~---~K~--L~~i-----~GkPLL~~vi~~a~~~~-----------~~~~VVV~~----~~e~I~ 101 (293)
T PLN02917 47 RVVGIIPARFASSRFE---GKP--LVHI-----LGKPMIQRTWERAKLAT-----------TLDHIVVAT----DDERIA 101 (293)
T ss_pred cEEEEEecCCCCCCCC---CCC--eeeE-----CCEEHHHHHHHHHHcCC-----------CCCEEEEEC----ChHHHH
Confidence 7889999999999997 487 8876 79999999999876532 122333332 346677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 002963 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (862)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN 447 (862)
+++.++ |. .+..| . ...+.|-|.+..++. .+ ....+++.+.+.|.
T Consensus 102 ~~~~~~---~v-----~vi~~--------~------------~~~~~GT~~~~~a~~------~l-~~~~d~Vlil~gD~ 146 (293)
T PLN02917 102 ECCRGF---GA-----DVIMT--------S------------ESCRNGTERCNEALK------KL-EKKYDIVVNIQGDE 146 (293)
T ss_pred HHHHHc---CC-----EEEeC--------C------------cccCCchHHHHHHHH------hc-cCCCCEEEEecCCc
Confidence 777642 21 11111 0 012456666655442 22 23457999999999
Q ss_pred ccccccHhHHHHhhhhhhcCCceeEEEe-ee-cCCCCcCceEEEEeecCCCccccceEEEEec-c-cCccCCCCCCCCCC
Q 002963 448 VVAATDLTLLALAGIGLHHGKKLGFASC-KR-SSGATEGINVLIEKKNLDGKWAYGLSCIEYT-E-FDKFGITRGPFSSN 523 (862)
Q Consensus 448 ~La~vDP~il~flG~~~~~~~~~~~~~v-vR-K~~~~E~vGvL~~~~~~dGk~~~~~~vVEYs-E-l~~~~~~~~~~~dg 523 (862)
++...+ .+-.++-.. ..+.++.+.+. .. +.....+-|.+...++.+|+ .+.++ . ++..- + ..+.
T Consensus 147 PlI~~~-tI~~li~~~-~~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~------alyfsr~~Ipe~k--d--~~~~ 214 (293)
T PLN02917 147 PLIEPE-IIDGVVKAL-QAAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGY------AIYFSRGLIPYNK--S--GKVN 214 (293)
T ss_pred CCCCHH-HHHHHHHHH-HhcCCceEEEEeeecCHHHhcCCCceEEEECCCCe------EEEeecCcCCcCC--C--cccc
Confidence 999863 222233433 23344444331 11 22111234444211234564 22333 2 22221 1 1111
Q ss_pred CccccCccceeeeEEeHHHHHhhhc
Q 002963 524 GLQADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 524 ~l~S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
.. ..+-.|+..+.|+.++|. .+.
T Consensus 215 ~~-~i~~~n~Giy~f~~~~L~-~l~ 237 (293)
T PLN02917 215 PQ-FPYLLHLGIQSYDAKFLK-IYP 237 (293)
T ss_pred cc-cceEEEEEEEEeCHHHHH-HHH
Confidence 11 113349999999999999 443
No 70
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=95.51 E-value=0.015 Score=57.91 Aligned_cols=48 Identities=23% Similarity=0.354 Sum_probs=38.0
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCC
Q 002963 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (862)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~ 358 (862)
+|+||||.|+||| .||. ++++ .|+++++..++++++. + .-+++|.|+.
T Consensus 2 ~iIla~G~s~R~g--~~K~--ll~~-----~g~pll~~~i~~l~~~--------~---~~~iivv~~~ 49 (188)
T TIGR03310 2 AIILAAGLSSRMG--QNKL--LLPY-----KGKTILEHVVDNALRL--------F---FDEVILVLGH 49 (188)
T ss_pred eEEECCCCcccCC--CCce--eccc-----CCeeHHHHHHHHHHHc--------C---CCcEEEEeCC
Confidence 5899999999998 5898 8766 6899999999888652 2 2356777776
No 71
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=95.27 E-value=0.012 Score=57.44 Aligned_cols=48 Identities=21% Similarity=0.462 Sum_probs=38.8
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCC
Q 002963 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (862)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~ 358 (862)
+|+||||.|+|||- ||. ++++ .|+++++..++.+.... .=+++|.+..
T Consensus 1 ~vILa~G~s~Rmg~--~K~--l~~i-----~g~~li~~~l~~l~~~~-----------~~~Ivvv~~~ 48 (160)
T PF12804_consen 1 AVILAAGKSSRMGG--PKA--LLPI-----GGKPLIERVLEALREAG-----------VDDIVVVTGE 48 (160)
T ss_dssp EEEEESSSCGGGTS--CGG--GSEE-----TTEEHHHHHHHHHHHHT-----------ESEEEEEEST
T ss_pred CEEECCcCcccCCC--Ccc--ceeE-----CCccHHHHHHHHhhccC-----------CceEEEecCh
Confidence 58899999999994 998 8876 79999999999987752 2366777765
No 72
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=95.26 E-value=0.016 Score=57.99 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=32.2
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHH
Q 002963 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQ 334 (862)
Q Consensus 289 vAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~ 334 (862)
++.|+||||.|+|||- .||. ++++ .|+++++..++.+.
T Consensus 1 ~~~iILAgG~s~Rmg~-~~K~--l~~i-----~g~pll~~~l~~l~ 38 (186)
T TIGR02665 1 ISGVILAGGRARRMGG-RDKG--LVEL-----GGKPLIEHVLARLR 38 (186)
T ss_pred CeEEEEcCCccccCCC-CCCc--eeEE-----CCEEHHHHHHHHHH
Confidence 3679999999999983 3898 8876 68999999998874
No 73
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=95.17 E-value=0.016 Score=57.73 Aligned_cols=48 Identities=25% Similarity=0.416 Sum_probs=38.0
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCC
Q 002963 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (862)
Q Consensus 290 AvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~ 358 (862)
+.|+||||.|+|||. +|. ++++ .|+++++..++++... .-+++|-|+.
T Consensus 2 ~~iILAgG~s~Rmg~--~K~--ll~~-----~g~~ll~~~i~~l~~~------------~~~iivv~~~ 49 (181)
T cd02503 2 TGVILAGGKSRRMGG--DKA--LLEL-----GGKPLLEHVLERLKPL------------VDEVVISANR 49 (181)
T ss_pred cEEEECCCccccCCC--Cce--eeEE-----CCEEHHHHHHHHHHhh------------cCEEEEECCC
Confidence 568999999999996 898 8876 6899999999887652 1246677776
No 74
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=95.05 E-value=0.021 Score=58.88 Aligned_cols=39 Identities=31% Similarity=0.430 Sum_probs=33.8
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (862)
+++.|+||||.|+|||. +|. ++++ .|+|+++..++.+..
T Consensus 7 ~~~~vILAgG~s~Rmg~--~K~--ll~~-----~g~~ll~~~i~~l~~ 45 (200)
T PRK02726 7 NLVALILAGGKSSRMGQ--DKA--LLPW-----QGVPLLQRVARIAAA 45 (200)
T ss_pred CceEEEEcCCCcccCCC--Cce--eeEE-----CCEeHHHHHHHHHHh
Confidence 67889999999999995 688 8876 689999999988754
No 75
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=94.94 E-value=0.02 Score=58.93 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=33.6
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 002963 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (862)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (862)
.|+||||.|+|||.+.||. ++++ .|+++++..++++..
T Consensus 2 aiIlAaG~s~R~~~~~~K~--l~~l-----~gkpll~~~l~~l~~ 39 (217)
T TIGR00453 2 AVIPAAGRGTRFGSGVPKQ--YLEL-----GGRPLLEHTLDAFLA 39 (217)
T ss_pred EEEEcCcccccCCCCCCcc--EeEE-----CCeEHHHHHHHHHhc
Confidence 5899999999999878998 8876 689999999988865
No 76
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=94.91 E-value=0.021 Score=58.51 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=35.2
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHH
Q 002963 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 336 (862)
Q Consensus 289 vAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~l 336 (862)
++.|+||||.|+|||-..||- ++|+ .|+++++..++++...
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~--l~~i-----~Gkpll~~~i~~l~~~ 41 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQ--FLEL-----GGKPVLEHTLEAFLAH 41 (218)
T ss_pred CEEEEECCcccccCCCCCCcc--eeEE-----CCeEHHHHHHHHHhcC
Confidence 357899999999999778998 8876 7999999999988653
No 77
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=94.87 E-value=0.024 Score=57.35 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=31.0
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 002963 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (862)
Q Consensus 290 AvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (862)
+.|+||||.|+|||. +|. ++++ .|+++++..++.+++
T Consensus 2 ~~vILAgG~s~Rmg~--~K~--ll~~-----~g~~ll~~~i~~~~~ 38 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE--NKL--ALPL-----GETTLGSASLKTALS 38 (190)
T ss_pred eEEEEcCCccccCCC--Cce--ecee-----CCccHHHHHHHHHHh
Confidence 468999999999995 688 7765 799999999887654
No 78
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=94.83 E-value=0.025 Score=58.74 Aligned_cols=41 Identities=27% Similarity=0.442 Sum_probs=36.3
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (862)
++++|+||||.|+|||...||- ++++ .|+++++..++++..
T Consensus 3 ~~~~iILAaG~s~R~g~~~~K~--l~~~-----~g~pli~~~l~~l~~ 43 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGADRPKQ--YLPL-----GGKPILEHTLEAFLA 43 (227)
T ss_pred ceEEEEEcCccccccCCCCCce--eeEE-----CCEEHHHHHHHHHHc
Confidence 5788999999999999888998 8876 689999999988765
No 79
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=94.80 E-value=0.027 Score=57.08 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=33.4
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQ 334 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~ 334 (862)
++..|+||||.|+||| ..+|. ++++ .|+++++..++.+.
T Consensus 3 ~~~~vILA~G~s~Rm~-~~~K~--ll~~-----~g~~ll~~~i~~l~ 41 (193)
T PRK00317 3 PITGVILAGGRSRRMG-GVDKG--LQEL-----NGKPLIQHVIERLA 41 (193)
T ss_pred CceEEEEcCCCcccCC-CCCCc--eeEE-----CCEEHHHHHHHHHh
Confidence 6789999999999996 26898 8876 78999999998775
No 80
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=94.74 E-value=0.049 Score=61.62 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=34.0
Q ss_pred CcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 002963 287 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (862)
Q Consensus 287 ~kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (862)
.+++.|+||||+|+||| .+|. ++++ .|+|+++..++.+..
T Consensus 173 ~~i~~iILAGG~SsRmG--~~K~--ll~~-----~Gk~ll~~~l~~l~~ 212 (369)
T PRK14490 173 VPLSGLVLAGGRSSRMG--SDKA--LLSY-----HESNQLVHTAALLRP 212 (369)
T ss_pred CCceEEEEcCCccccCC--CCcE--EEEE-----CCccHHHHHHHHHHh
Confidence 46789999999999999 4898 8876 799999999888754
No 81
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=94.29 E-value=0.046 Score=61.82 Aligned_cols=41 Identities=17% Similarity=0.400 Sum_probs=35.1
Q ss_pred cCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHH
Q 002963 286 LPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQ 334 (862)
Q Consensus 286 L~kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~ 334 (862)
+.+++.|+||||+|+||| ..||. ++++ .|+|+++..++.+.
T Consensus 3 ~~~i~~VILAgG~s~Rmg-g~~K~--ll~i-----~Gkpll~~~i~~l~ 43 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN-GRDKA--LILL-----GGKPLIERVVDRLR 43 (366)
T ss_pred CCCceEEEEcCCcccCCC-CCCCc--eeEE-----CCeeHHHHHHHHHH
Confidence 347889999999999996 37898 8876 68999999999875
No 82
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=93.82 E-value=1.2 Score=49.12 Aligned_cols=158 Identities=20% Similarity=0.183 Sum_probs=95.0
Q ss_pred EEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHHH
Q 002963 292 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (862)
Q Consensus 292 VlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~ 368 (862)
|+||||.||||- +..||- ++|| -+|..+++-++++... | .--++|.++. .+-...++
T Consensus 4 iILAgG~GTRL~PlT~~~~Kq--LlpV-----~~KPmi~y~l~~L~~a--------G---I~dI~II~~~--~~~~~~~~ 63 (286)
T COG1209 4 VILAGGSGTRLRPLTRVVPKQ--LLPV-----YDKPMIYYPLETLMLA--------G---IRDILIVVGP--EDKPTFKE 63 (286)
T ss_pred EEecCcCccccccccccCCcc--ccee-----cCcchhHhHHHHHHHc--------C---CceEEEEecC--Cchhhhhh
Confidence 789999999986 578888 8887 5788999998888663 4 2235666666 46666667
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCc
Q 002963 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (862)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN~ 448 (862)
++-+-..||+ +++.-.| -.|.|=++-+. +-+++. |-+-..++--||+
T Consensus 64 llGdgs~~gv---~itY~~Q----------------------~~p~GlA~Av~------~a~~fv--~~~~f~l~LGDNi 110 (286)
T COG1209 64 LLGDGSDFGV---DITYAVQ----------------------PEPDGLAHAVL------IAEDFV--GDDDFVLYLGDNI 110 (286)
T ss_pred hhcCccccCc---ceEEEec----------------------CCCCcHHHHHH------HHHhhc--CCCceEEEecCce
Confidence 7776688887 4544444 34666555443 223332 4456778999999
Q ss_pred cccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCc
Q 002963 449 VAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDK 512 (862)
Q Consensus 449 La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~ 512 (862)
+.. |.. .++-.+...+. ++.+..++....+.-||+-. ..||+ .+.++|=-+.|+
T Consensus 111 ~~~-~l~--~~~~~~~~~~~--ga~i~~~~V~dP~rfGV~e~--d~~~~---v~~l~EKP~~P~ 164 (286)
T COG1209 111 FQD-GLS--ELLEHFAEEGS--GATILLYEVDDPSRYGVVEF--DEDGK---VIGLEEKPKEPK 164 (286)
T ss_pred ecc-ChH--HHHHHHhccCC--CcEEEEEEcCCcccceEEEE--cCCCc---EEEeEECCCCCC
Confidence 888 321 22333333232 33332223333355666643 23565 255655444444
No 83
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=93.76 E-value=3.1 Score=44.32 Aligned_cols=187 Identities=10% Similarity=0.060 Sum_probs=95.0
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHHHHH
Q 002963 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 370 (862)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~fl 370 (862)
+|++|+|.||||+ +|- ++++ .|+++++..++++++. + + -.++|-|.+ +.+.+.+
T Consensus 2 ~iIpA~g~s~R~~---~K~--L~~l-----~GkPli~~~le~~~~~--------~--~-d~VvVvt~~-----~~i~~~~ 55 (238)
T TIGR00466 2 VIIPARLASSRLP---GKP--LEDI-----FGKPMIVHVAENANES--------G--A-DRCIVATDD-----ESVAQTC 55 (238)
T ss_pred EEEecCCCCCCCC---CCe--eccc-----CCcCHHHHHHHHHHhC--------C--C-CeEEEEeCH-----HHHHHHH
Confidence 5889999999995 687 7765 7999999999986542 1 1 123454433 4456666
Q ss_pred HHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCccc
Q 002963 371 ERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVA 450 (862)
Q Consensus 371 e~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN~La 450 (862)
++ ||. ++ +. .. ...+.|-..+..++..-.+ ..-+++.+.+.|.+++
T Consensus 56 ~~---~g~---~~----------v~--------~~----~~~~~Gt~r~~~~~~~l~~------~~~d~Vli~~gD~Pli 101 (238)
T TIGR00466 56 QK---FGI---EV----------CM--------TS----KHHNSGTERLAEVVEKLAL------KDDERIVNLQGDEPFI 101 (238)
T ss_pred HH---cCC---EE----------EE--------eC----CCCCChhHHHHHHHHHhCC------CCCCEEEEEcCCcCcC
Confidence 54 332 11 11 00 0124455555555432111 2357899999999998
Q ss_pred cccHhHHHHhhhhhhcCCceeEEEeeecCCCCc----CceEEEEeecCCCccccceEEEEecccCccCCCCCC--CCCCC
Q 002963 451 ATDLTLLALAGIGLHHGKKLGFASCKRSSGATE----GINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGP--FSSNG 524 (862)
Q Consensus 451 ~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E----~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~--~~dg~ 524 (862)
..+- |-.++-.+...+.++...+ .+...+++ ....++. ..+|+ ....--+-+|.. .+.- ....+
T Consensus 102 ~~~~-I~~li~~~~~~~~~~a~~~-~~~~d~~~~~~p~~vk~v~--~~~g~----alyfsr~~ip~~--R~~~~~~~tpq 171 (238)
T TIGR00466 102 PKEI-IRQVADNLATKNVPMAALA-VKIHDAEEAFNPNAVKVVL--DSQGY----ALYFSRSLIPFD--RDFFAKRQTPV 171 (238)
T ss_pred CHHH-HHHHHHHHhcCCCCEEEEe-eecCCHHHccCCCceEEEe--CCCCe----EEEecCCCCCCC--CCccccccccc
Confidence 8632 2123343323334444444 33222222 1112221 24554 111100111111 0000 00111
Q ss_pred ccccCccceeeeEEeHHHHHhhhc
Q 002963 525 LQADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 525 l~S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
. ..|..|++.+-|+.++|++...
T Consensus 172 ~-~~~~~h~Giy~~~~~~L~~~~~ 194 (238)
T TIGR00466 172 G-DNLLRHIGIYGYRAGFIEEYVA 194 (238)
T ss_pred c-cceeEEEEEEeCCHHHHHHHHh
Confidence 1 1244499999999999999764
No 84
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=93.75 E-value=0.18 Score=56.95 Aligned_cols=178 Identities=19% Similarity=0.172 Sum_probs=105.8
Q ss_pred EEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHH
Q 002963 290 GEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (862)
Q Consensus 290 AvVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T 366 (862)
-.|+||||.||||- .+-||- |+|| -||.+++++++.+.+ +| ---++|.+.. ..+.+
T Consensus 3 kavILagG~GtRLrPlT~~~PKP--llpI-----~gkPii~~~l~~L~~--------~G---v~eivi~~~y---~~~~i 61 (358)
T COG1208 3 KAVILAGGYGTRLRPLTDDRPKP--LLPI-----AGKPLIEYVLEALAA--------AG---VEEIVLVVGY---LGEQI 61 (358)
T ss_pred eEEEEeCCccccccccccCCCcc--ccee-----CCccHHHHHHHHHHH--------CC---CcEEEEEecc---chHHH
Confidence 46789999999997 478998 9887 589999999988755 34 3345666665 78899
Q ss_pred HHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeC
Q 002963 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQV 445 (862)
Q Consensus 367 ~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~V~qv 445 (862)
.++|.+...+|+ +|.+..|.. |-|-|+ +..++.. + +.+-++|.+-
T Consensus 62 ~~~~~d~~~~~~---~I~y~~e~~----------------------~lGTag~l~~a~~~------l---~~~~f~v~~G 107 (358)
T COG1208 62 EEYFGDGEGLGV---RITYVVEKE----------------------PLGTAGALKNALDL------L---GGDDFLVLNG 107 (358)
T ss_pred HHHHhcccccCC---ceEEEecCC----------------------cCccHHHHHHHHHh------c---CCCcEEEEEC
Confidence 999999866665 444443333 334333 3333321 1 1166777777
Q ss_pred CCccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCc
Q 002963 446 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGL 525 (862)
Q Consensus 446 DN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l 525 (862)
|++--. | +-.++.+...+++...+.. ++...+ ..-|++.. .++. -.++++.|-|... ....
T Consensus 108 Dv~~~~-d--l~~l~~~~~~~~~~~~~~~-~~~~~~-~~~Gvv~~---~~~~----~~v~~f~ekp~~~-----~~~~-- 168 (358)
T COG1208 108 DVLTDL-D--LSELLEFHKKKGALATIAL-TRVLDP-SEFGVVET---DDGD----GRVVEFREKPGPE-----EPPS-- 168 (358)
T ss_pred Ceeecc-C--HHHHHHHHHhccCccEEEE-EecCCC-CcCceEEe---cCCC----ceEEEEEecCCCC-----CCCC--
Confidence 776543 2 2234666666644444443 555544 34455543 2121 2466666655321 0000
Q ss_pred cccCccceeeeEEeHHHHH
Q 002963 526 QADFPANTNILYVDLASAE 544 (862)
Q Consensus 526 ~S~F~~Ninn~~fsL~~l~ 544 (862)
.-.|+..++|+-+.++
T Consensus 169 ---~~in~Giyi~~~~v~~ 184 (358)
T COG1208 169 ---NLINAGIYIFDPEVFD 184 (358)
T ss_pred ---ceEEeEEEEECHHHhh
Confidence 2248888888877666
No 85
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=93.64 E-value=0.1 Score=55.52 Aligned_cols=61 Identities=20% Similarity=0.352 Sum_probs=47.2
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 291 vVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
+|+||||.||||+- ..||. ++|+ .|++++++.++.+.+. | .-.++|.|.. ..+.+.
T Consensus 3 aiIlAaG~gtRl~plt~~~pK~--llpv-----~gkpli~~~l~~l~~~--------g---i~~i~iv~~~---~~~~i~ 61 (267)
T cd02541 3 AVIPAAGLGTRFLPATKAIPKE--MLPI-----VDKPVIQYIVEEAVAA--------G---IEDIIIVTGR---GKRAIE 61 (267)
T ss_pred EEEEcCCCCccCCCcccCCCce--eeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEeCC---chHHHH
Confidence 58899999999973 68998 8887 5789999999887652 3 2256788886 667788
Q ss_pred HHHHH
Q 002963 368 SLCER 372 (862)
Q Consensus 368 ~fle~ 372 (862)
++|..
T Consensus 62 ~~~~~ 66 (267)
T cd02541 62 DHFDR 66 (267)
T ss_pred HHhCC
Confidence 87754
No 86
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=93.61 E-value=0.06 Score=60.75 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=33.0
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (862)
.+..|+||||+|+||| .+|. ++++ .|+|+++..++++..
T Consensus 160 ~i~~IILAGGkSsRMG--~dKa--LL~~-----~GkpLl~~~ie~l~~ 198 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG--KDKA--LLNY-----QGQPHAQYLYDLLAK 198 (346)
T ss_pred CceEEEEeccccccCC--CCcc--ccee-----CCccHHHHHHHHHHh
Confidence 5678999999999999 5888 7765 799999998877654
No 87
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=93.50 E-value=0.12 Score=55.25 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=49.3
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
++.+|+||+|.|||||.+.||- -+++ .|+++|+..++-.+... ..=.++|.++. +-+....
T Consensus 4 ~~~~vilAaG~G~R~~~~~pKq--~l~l-----~g~pll~~tl~~f~~~~----------~i~~Ivvv~~~--~~~~~~~ 64 (230)
T COG1211 4 MVSAVILAAGFGSRMGNPVPKQ--YLEL-----GGRPLLEHTLEAFLESP----------AIDEIVVVVSP--EDDPYFE 64 (230)
T ss_pred eEEEEEEcCccccccCCCCCce--EEEE-----CCEEehHHHHHHHHhCc----------CCCeEEEEECh--hhhHHHH
Confidence 6788999999999999999997 7765 79999999988877643 12256677776 4555555
Q ss_pred HHHH
Q 002963 368 SLCE 371 (862)
Q Consensus 368 ~fle 371 (862)
++.+
T Consensus 65 ~~~~ 68 (230)
T COG1211 65 KLPK 68 (230)
T ss_pred Hhhh
Confidence 5554
No 88
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=93.24 E-value=0.076 Score=60.62 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=37.2
Q ss_pred CcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHH
Q 002963 287 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 336 (862)
Q Consensus 287 ~kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~l 336 (862)
.+++.|+||||.|+|||...||- ++++ .|+++++..++.+.+.
T Consensus 4 m~v~aIILAAG~GsRmg~~~pKq--ll~l-----~GkPll~~tl~~l~~~ 46 (378)
T PRK09382 4 SDISLVIVAAGRSTRFSAEVKKQ--WLRI-----GGKPLWLHVLENLSSA 46 (378)
T ss_pred CcceEEEECCCCCccCCCCCCee--EEEE-----CCeeHHHHHHHHHhcC
Confidence 36789999999999999889998 8876 6899999988877653
No 89
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=92.66 E-value=0.078 Score=54.93 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=31.6
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 002963 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (862)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (862)
+|+||||.||||+ ...||. ++|+ .|+++++..++.+..
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~--ll~i-----~g~pli~~~l~~l~~ 41 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKP--LIEV-----DGKPMIEWVIESLAK 41 (231)
T ss_pred CEEECCcCCccccccCCCCCce--eeEE-----CCEEHHHHHHHhhhc
Confidence 4899999999995 368998 8887 688999998887754
No 90
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=92.03 E-value=0.27 Score=51.09 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=47.1
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
.|+||||.|+||+ ...||. ++|+ .|++++++.++.+.+ .| .--++|++.. ..+...
T Consensus 3 avIlagg~g~rl~plt~~~pK~--llpv-----~g~pli~~~l~~l~~--------~g---i~~i~vv~~~---~~~~~~ 61 (216)
T cd02507 3 AVVLADGFGSRFLPLTSDIPKA--LLPV-----ANVPLIDYTLEWLEK--------AG---VEEVFVVCCE---HSQAII 61 (216)
T ss_pred EEEEeCCCccccCccccCCCcc--cceE-----CCEEHHHHHHHHHHH--------CC---CCeEEEEeCC---cHHHHH
Confidence 4679999999997 378998 8887 588999998877654 23 2247788887 566777
Q ss_pred HHHHHhC
Q 002963 368 SLCERLR 374 (862)
Q Consensus 368 ~fle~n~ 374 (862)
+++.+..
T Consensus 62 ~~~~~~~ 68 (216)
T cd02507 62 EHLLKSK 68 (216)
T ss_pred HHHHhcc
Confidence 7777644
No 91
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=91.37 E-value=3.7 Score=47.28 Aligned_cols=200 Identities=16% Similarity=0.199 Sum_probs=117.3
Q ss_pred CcEEEEEecCCccccCCC---CCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCc
Q 002963 287 PELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 362 (862)
Q Consensus 287 ~kvAvVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~T 362 (862)
+++-.++||||.|+||+- ..+|- .+|.+ || -+.|+.+-... ..| .--+.+.|=. .+
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~Rakp--AVpFg-----GkYRiIDF~LSN~v--------NSG---i~~I~VltQy--~~ 63 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKP--AVPFG-----GKYRIIDFALSNCV--------NSG---IRRIGVLTQY--KS 63 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCcccc--ccccC-----ceeEEEeEEccccc--------ccC---CCeEEEEecc--ch
Confidence 467788999999999983 45555 55443 33 23343322211 122 2346677777 56
Q ss_pred hHHHHHHHHHhCCCCCCC--CceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEE
Q 002963 363 HERITSLCERLRWFGRGQ--SSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGA 440 (862)
Q Consensus 363 he~T~~fle~n~yFGl~~--~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi 440 (862)
| .-.+++..-..|++++ +.|+++.+.+- .++ -.|.-.+-=.+|.- +..+.+-+-+|+
T Consensus 64 ~-SL~~Hi~~G~~w~l~~~~~~v~ilp~~~~-----~~~---------~~wy~Gtadai~Qn------l~~i~~~~~eyv 122 (393)
T COG0448 64 H-SLNDHIGRGWPWDLDRKNGGVFILPAQQR-----EGG---------ERWYEGTADAIYQN------LLIIRRSDPEYV 122 (393)
T ss_pred h-HHHHHhhCCCccccccccCcEEEeCchhc-----cCC---------CcceeccHHHHHHh------HHHHHhcCCCEE
Confidence 6 5556666655565543 34444432211 011 11222222223332 344568899999
Q ss_pred EEEeCCCccccccHhHHHHhhhhhhcCCceeEEEeeecCC-CCcCceEEEEeecCCCccccceEEEEecccCccCCCCCC
Q 002963 441 TVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSG-ATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGP 519 (862)
Q Consensus 441 ~V~qvDN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~-~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~ 519 (862)
.|.+-|=+ .++|..- ++-.+..+++++.+.+ .+-+. ++..-|++-. ..+|+ ++|+.|=|..+
T Consensus 123 lIlsgDhI-YkmDy~~--ml~~H~~~gadiTv~~-~~Vp~~eas~fGim~~--D~~~~------i~~F~eKp~~~----- 185 (393)
T COG0448 123 LILSGDHI-YKMDYSD--MLDFHIESGADVTVAV-KEVPREEASRFGVMNV--DENGR------IIEFVEKPADG----- 185 (393)
T ss_pred EEecCCEE-EecCHHH--HHHHHHHcCCCEEEEE-EECChHhhhhcCceEE--CCCCC------EEeeeeccCcC-----
Confidence 99999864 5567653 4789999999999887 33332 2334676643 35565 67776666652
Q ss_pred CCCCCccccCccceeeeEEeHHHHHhhhcc
Q 002963 520 FSSNGLQADFPANTNILYVDLASAELVGSS 549 (862)
Q Consensus 520 ~~dg~l~S~F~~Ninn~~fsL~~l~~vl~~ 549 (862)
..+.++ +...+.+|+-+.|.++|++
T Consensus 186 ~~~~~l-----aSMgiYIf~~~~L~~~L~~ 210 (393)
T COG0448 186 PPSNSL-----ASMGIYIFNTDLLKELLEE 210 (393)
T ss_pred Ccccce-----eeeeeEEEcHHHHHHHHHH
Confidence 111111 4689999999999999975
No 92
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=90.72 E-value=0.34 Score=53.57 Aligned_cols=62 Identities=21% Similarity=0.367 Sum_probs=48.3
Q ss_pred EEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHH
Q 002963 290 GEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (862)
Q Consensus 290 AvVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T 366 (862)
-.|++|||.||||+- ..||- ++|+ .|+++++..++.+.+. | .--++|.+.. ..+..
T Consensus 10 ~aiIlaaG~g~Rl~~~t~~~pK~--l~pv-----~g~pii~~~l~~l~~~--------g---i~~i~vv~~~---~~~~i 68 (302)
T PRK13389 10 KAVIPVAGLGTRMLPATKAIPKE--MLPL-----VDKPLIQYVVNECIAA--------G---ITEIVLVTHS---SKNSI 68 (302)
T ss_pred EEEEECCcCCccCCCccCCCCce--eeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEeCC---CHHHH
Confidence 368889999999964 68998 8887 5889999998887662 3 2346777776 67888
Q ss_pred HHHHHH
Q 002963 367 TSLCER 372 (862)
Q Consensus 367 ~~fle~ 372 (862)
.++|..
T Consensus 69 ~~~~~~ 74 (302)
T PRK13389 69 ENHFDT 74 (302)
T ss_pred HHHHcc
Confidence 999864
No 93
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=89.79 E-value=0.52 Score=55.55 Aligned_cols=203 Identities=15% Similarity=0.138 Sum_probs=103.2
Q ss_pred EEEEEecCCccccCC-C---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchH
Q 002963 289 LGEIYPLGGSADRLG-L---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (862)
Q Consensus 289 vAvVlLAGGlGTRLG-~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The 364 (862)
+-.|+||||.||||= + ..||- ++|+. .++|+||..++++..+ + +.=++ |.|+. .-.+
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq--~l~l~----~~~sllq~t~~r~~~~--------~--~~~~i-ivt~~--~~~~ 66 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQ--FLCLK----GDLTMLQTTICRLNGV--------E--CESPV-VICNE--QHRF 66 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcc--eeECC----CCCCHHHHHHHHHHhC--------C--CCCcE-EEeCH--HHHH
Confidence 567899999999996 2 35998 99886 6789999999987654 2 23355 55887 3444
Q ss_pred HHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHc--C-ceEEE
Q 002963 365 RITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDN--G-RKGAT 441 (862)
Q Consensus 365 ~T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~--G-ikyi~ 441 (862)
.+++-|.+.+. .+ .+++++ |..--++|- -.+.|++ +.++ + =.-+.
T Consensus 67 ~v~~ql~~~~~---~~------------------~~ii~E-P~~rnTApa---ialaa~~-------~~~~~~~~~~~v~ 114 (478)
T PRK15460 67 IVAEQLRQLNK---LT------------------ENIILE-PAGRNTAPA---IALAALA-------AKRHSPESDPLML 114 (478)
T ss_pred HHHHHHHhcCC---cc------------------ccEEec-CCCCChHHH---HHHHHHH-------HHHhcCCCCCeEE
Confidence 55555554322 01 123332 111122221 0122221 1222 2 24677
Q ss_pred EEeCCCccccccHhHHHHh--hhhhh-cCCceeEEEeeecCCCCcCceEEEEeecCCCc-cccceEEEEecccCccCCCC
Q 002963 442 VRQVSNVVAATDLTLLALA--GIGLH-HGKKLGFASCKRSSGATEGINVLIEKKNLDGK-WAYGLSCIEYTEFDKFGITR 517 (862)
Q Consensus 442 V~qvDN~La~vDP~il~fl--G~~~~-~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk-~~~~~~vVEYsEl~~~~~~~ 517 (862)
|...|......+ .|...+ +.... .+.=+.+- ++-+.|+.+=|-+-.-...++. ......|....|=|+...++
T Consensus 115 vlPaDH~I~d~~-~F~~~i~~A~~~A~~~~lvt~G--I~Pt~PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~ 191 (478)
T PRK15460 115 VLAADHVIADED-AFRAAVRNAMPYAEAGKLVTFG--IVPDLPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQ 191 (478)
T ss_pred EeccccccCCHH-HHHHHHHHHHHHHhcCCEEEEe--cCCCCCCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHH
Confidence 888887765532 121111 12112 22222222 3333456676666320000000 00013444455555542122
Q ss_pred CCCCCCCccccCccceeeeEEeHHHHHhhhcc
Q 002963 518 GPFSSNGLQADFPANTNILYVDLASAELVGSS 549 (862)
Q Consensus 518 ~~~~dg~l~S~F~~Ninn~~fsL~~l~~vl~~ 549 (862)
.=..+|. |-=|..++.|+.+.+.+.+++
T Consensus 192 ~yl~~G~----y~WNsGiF~~~a~~~l~~~~~ 219 (478)
T PRK15460 192 AYVASGE----YYWNSGMFLFRAGRYLEELKK 219 (478)
T ss_pred HHHHcCC----EEEecceeheeHHHHHHHHHH
Confidence 1122231 445999999999999998876
No 94
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=88.20 E-value=0.94 Score=47.32 Aligned_cols=60 Identities=27% Similarity=0.402 Sum_probs=41.2
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCc-hHHHHHH
Q 002963 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN-HERITSL 369 (862)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~T-he~T~~f 369 (862)
.|+||||.++||| .|. ++++ .|+++++..++.+.... ..-.++|-|+. +- ++...++
T Consensus 2 aiIlA~G~S~R~~---~K~--ll~l-----~Gkpli~~~i~~l~~~~----------~~~~ivVv~~~--~~~~~~i~~~ 59 (233)
T cd02518 2 AIIQARMGSTRLP---GKV--LKPL-----GGKPLLEHLLDRLKRSK----------LIDEIVIATST--NEEDDPLEAL 59 (233)
T ss_pred EEEeeCCCCCCCC---CCc--cccc-----CCccHHHHHHHHHHhCC----------CCCeEEEECCC--CcccHHHHHH
Confidence 4789999999996 487 7665 78999999998876532 11245666665 22 2566666
Q ss_pred HHH
Q 002963 370 CER 372 (862)
Q Consensus 370 le~ 372 (862)
+..
T Consensus 60 ~~~ 62 (233)
T cd02518 60 AKK 62 (233)
T ss_pred HHH
Confidence 653
No 95
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=86.67 E-value=17 Score=41.28 Aligned_cols=187 Identities=19% Similarity=0.219 Sum_probs=114.1
Q ss_pred CcEEEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCch
Q 002963 287 PELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (862)
Q Consensus 287 ~kvAvVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~Th 363 (862)
..++.|+|-||-||||= ++.||- +.|+ ..+.+++++++.+.. .| .--+++.|++ +..
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKP--lVpf-----gn~pmI~hqieal~n--------sG---i~~I~la~~y--~s~ 67 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKP--LVPF-----GNKPMILHQIEALIN--------SG---ITKIVLATQY--NSE 67 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCc--cccc-----CcchhhHHHHHHHHh--------CC---CcEEEEEEec--CcH
Confidence 47888999999999985 577887 7665 467788887776654 34 5678999998 444
Q ss_pred HHHHHHHHHhC-CCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEE
Q 002963 364 ERITSLCERLR-WFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATV 442 (862)
Q Consensus 364 e~T~~fle~n~-yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V 442 (862)
.-.+.+.+.+. .|| ..| +|.|...|.=+ .|- -.|..+ .|....++ -.+|
T Consensus 68 sl~~~~~k~y~~~lg---Vei-~~s~eteplgt--aGp-------------------l~laR~--~L~~~~~~---~ffV 117 (371)
T KOG1322|consen 68 SLNRHLSKAYGKELG---VEI-LASTETEPLGT--AGP-------------------LALARD--FLWVFEDA---PFFV 117 (371)
T ss_pred HHHHHHHHHhhhccc---eEE-EEEeccCCCcc--cch-------------------HHHHHH--HhhhcCCC---cEEE
Confidence 46677777763 444 234 45555555433 221 111111 11111111 3555
Q ss_pred EeCCCccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecC-CCccccceEEEEecccCccCCCCCCCC
Q 002963 443 RQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNL-DGKWAYGLSCIEYTEFDKFGITRGPFS 521 (862)
Q Consensus 443 ~qvDN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~-dGk~~~~~~vVEYsEl~~~~~~~~~~~ 521 (862)
-+.| .++++| +..|+.++..++++....+ .. ..+.-+-|++... . .| .+..++|=|++..+
T Consensus 118 LnsD-vi~~~p--~~~~vqfH~~~gae~TI~~-t~-vdepSkyGvv~~d--~~~g------rV~~F~EKPkd~vs----- 179 (371)
T KOG1322|consen 118 LNSD-VICRMP--YKEMVQFHRAHGAEITIVV-TK-VDEPSKYGVVVID--EDTG------RVIRFVEKPKDLVS----- 179 (371)
T ss_pred ecCC-eeecCC--HHHHHHHHHhcCCceEEEE-Ee-ccCccccceEEEe--cCCC------ceeEehhCchhhhh-----
Confidence 5555 455653 3467999999999988876 32 2234466676541 3 33 46677777664310
Q ss_pred CCCccccCccceeeeEEeHHHHHhhhc
Q 002963 522 SNGLQADFPANTNILYVDLASAELVGS 548 (862)
Q Consensus 522 dg~l~S~F~~Ninn~~fsL~~l~~vl~ 548 (862)
-.-|...+.|+-+-|.+++-
T Consensus 180 -------nkinaGiYi~~~~vL~ri~~ 199 (371)
T KOG1322|consen 180 -------NKINAGIYILNPEVLDRILL 199 (371)
T ss_pred -------ccccceEEEECHHHHhHhhh
Confidence 12278888999998888763
No 96
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=86.42 E-value=13 Score=44.20 Aligned_cols=60 Identities=27% Similarity=0.328 Sum_probs=45.0
Q ss_pred ceEEEecCC---eeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCcccc
Q 002963 382 SFQLFEQPL---VPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAA 451 (862)
Q Consensus 382 qV~~F~Q~~---vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qvDN~La~ 451 (862)
+|.|=.|.. --+++ .|+.+..++.+++..-|.|||.+. +-|-+..-.-|||=||||+...
T Consensus 235 ~IsfS~Qk~sTDTIAv~-~dN~pFR~~dG~LlFRPgGHGALi---------eNLN~ldaDiIFIKNIDNVvpd 297 (513)
T PF14134_consen 235 EISFSEQKPSTDTIAVD-PDNTPFRNEDGSLLFRPGGHGALI---------ENLNDLDADIIFIKNIDNVVPD 297 (513)
T ss_pred EEEecccCCCCCeeEEC-CCCCccCCCCCCEEeCCCcchHHH---------hhhccccCCEEEEeCccccCCc
Confidence 344544542 34666 678888889999999999999865 4445566788999999999864
No 97
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=84.10 E-value=1.4 Score=49.44 Aligned_cols=201 Identities=13% Similarity=0.086 Sum_probs=105.3
Q ss_pred EEEEecCCccccCC----CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHH
Q 002963 290 GEIYPLGGSADRLG----LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (862)
Q Consensus 290 AvVlLAGGlGTRLG----~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~ 365 (862)
.-|+||||.||||= -..||- -+.+. +++|+||-.++|+..+. + .-.+++.|+. +-...
T Consensus 3 ~pvIlaGG~GsRLWPLSR~~~PKQ--Fl~L~----~~~Sllq~T~~R~~~l~-------~---~~~~~vVtne--~~~f~ 64 (333)
T COG0836 3 IPVILAGGSGSRLWPLSRKDYPKQ--FLKLF----GDLSLLQQTVKRLAFLG-------D---IEEPLVVTNE--KYRFI 64 (333)
T ss_pred eeEEEeCCCccccCCcCcccCCcc--ceeeC----CCCcHHHHHHHHHhhcC-------C---ccCeEEEeCH--HHHHH
Confidence 45789999999994 267887 77765 88999999999998864 1 3345666666 34444
Q ss_pred HHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeC
Q 002963 366 ITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQV 445 (862)
Q Consensus 366 T~~fle~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~qv 445 (862)
+++=|.+-+. ++ ..+ ++++--. =-++| .|.. +.+.-..+.|=--+.|...
T Consensus 65 v~eql~e~~~-----~~--------------~~~-illEP~g-RnTAp----AIA~-----aa~~~~~~~~d~~~lVlps 114 (333)
T COG0836 65 VKEQLPEIDI-----EN--------------AAG-IILEPEG-RNTAP----AIAL-----AALSATAEGGDALVLVLPS 114 (333)
T ss_pred HHHHHhhhhh-----cc--------------ccc-eEeccCC-CCcHH----HHHH-----HHHHHHHhCCCcEEEEecC
Confidence 4444444111 00 112 3332111 11222 0111 1122333444334677777
Q ss_pred CCccccccHhHHHHhhhh---hhcCCceeEEEeeecCCCCcCceEEEEee-cCC-CccccceEEEEecccCccCCCCCCC
Q 002963 446 SNVVAATDLTLLALAGIG---LHHGKKLGFASCKRSSGATEGINVLIEKK-NLD-GKWAYGLSCIEYTEFDKFGITRGPF 520 (862)
Q Consensus 446 DN~La~vDP~il~flG~~---~~~~~~~~~~~vvRK~~~~E~vGvL~~~~-~~d-Gk~~~~~~vVEYsEl~~~~~~~~~~ 520 (862)
|-.....+ .|...+.-. +.++.-+.|-.++-+ |..|-|-+-.-. ..+ |- +.|-++-|=|+...++.-+
T Consensus 115 DH~I~d~~-af~~av~~A~~~A~~g~lVTfGI~Pt~--PeTGYGYIe~G~~~~~~~~----~~V~~FvEKPd~etA~~yv 187 (333)
T COG0836 115 DHVIADEE-AFLNAVKKAEKAAEEGGIVTFGIPPTR--PETGYGYIETGESIAENGV----YKVDRFVEKPDLETAKKYV 187 (333)
T ss_pred cceeccHH-HHHHHHHHHHHHHHcCCEEEEecCCCC--CccCcceeecCcccccCCc----eEeeeeeeCCCHHHHHHHH
Confidence 76655432 221111111 123333344433332 455656552100 001 22 5666677777764333333
Q ss_pred CCCCccccCccceeeeEEeHHHHHhhhcc
Q 002963 521 SSNGLQADFPANTNILYVDLASAELVGSS 549 (862)
Q Consensus 521 ~dg~l~S~F~~Ninn~~fsL~~l~~vl~~ 549 (862)
..|. |--|-....|+.+.+.+.+++
T Consensus 188 ~sG~----y~WNSGmF~Fra~~~l~e~~~ 212 (333)
T COG0836 188 ESGE----YLWNSGMFLFRASVFLEELKK 212 (333)
T ss_pred HcCc----eEeeccceEEEHHHHHHHHHh
Confidence 4342 555999999999999888875
No 98
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=79.79 E-value=68 Score=33.94 Aligned_cols=182 Identities=13% Similarity=0.149 Sum_probs=93.3
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHHHHH
Q 002963 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 370 (862)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~~fl 370 (862)
+|++|.|.+.||+ .|- +.++ .|++++++.++.+++.. +.-.+++ .++ ++++.++.
T Consensus 2 aiIpArG~Skr~~---~Kn--l~~l-----~GkpLi~~ti~~a~~s~----------~~d~IvV-std----~~~i~~~a 56 (222)
T TIGR03584 2 AIIPARGGSKRIP---RKN--IKPF-----CGKPMIAYSIEAALNSG----------LFDKVVV-STD----DEEIAEVA 56 (222)
T ss_pred EEEccCCCCCCCC---Ccc--chhc-----CCcCHHHHHHHHHHhCC----------CCCEEEE-eCC----CHHHHHHH
Confidence 4778999999996 476 5443 79999999999876632 1112333 333 35677777
Q ss_pred HHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHH-cCceEEEEEeCCCcc
Q 002963 371 ERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHD-NGRKGATVRQVSNVV 449 (862)
Q Consensus 371 e~n~yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~-~Gikyi~V~qvDN~L 449 (862)
+++ |. .| |... +..++..--|-.++.... ++.+.. ...+++.+.+.|.++
T Consensus 57 ~~~---g~---~v--------~~~r----------~~~l~~d~~~~~~si~~~-----l~~l~~~~~~d~v~~l~~tsPl 107 (222)
T TIGR03584 57 KSY---GA---SV--------PFLR----------PKELADDFTGTAPVVKHA-----IEELKLQKQYDHACCIYATAPF 107 (222)
T ss_pred HHc---CC---Ee--------EEeC----------hHHHcCCCCCchHHHHHH-----HHHHhhcCCCCEEEEecCCCCc
Confidence 753 32 11 1111 011111111222222221 233322 346889999999999
Q ss_pred ccccHhHHHHhhhhhhcCCceeEEEeeecC-CCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcccc
Q 002963 450 AATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQAD 528 (862)
Q Consensus 450 a~vDP~il~flG~~~~~~~~~~~~~vvRK~-~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S~ 528 (862)
...+- +-.++......+++..+-+ ++.. ++.-. ... ..+|+ +.+.-...... +..|-. ..
T Consensus 108 ~~~~~-I~~~i~~~~~~~~ds~~sv-~~~~~~~~~~--~~~---~~~g~----~~~~~~~~~~~------~rQd~~--~~ 168 (222)
T TIGR03584 108 LQAKI-LKEAFELLKQPNAHFVFSV-TSFAFPIQRA--FKL---KENGG----VEMFFPEHFNT------RSQDLE--EA 168 (222)
T ss_pred CCHHH-HHHHHHHHHhCCCCEEEEe-eccCCChHHh--eEE---CCCCc----EEecCCCcccC------CCCCCc--hh
Confidence 99621 1123444445557777665 3322 12111 121 14565 33322111110 111111 12
Q ss_pred CccceeeeEEeHHHHHh
Q 002963 529 FPANTNILYVDLASAEL 545 (862)
Q Consensus 529 F~~Ninn~~fsL~~l~~ 545 (862)
|.-|-+.++++.+.+.+
T Consensus 169 y~~nga~y~~~~~~~~~ 185 (222)
T TIGR03584 169 YHDAGQFYWGKSQAWLE 185 (222)
T ss_pred eeeCCeEEEEEHHHHHh
Confidence 54599999999998865
No 99
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=73.41 E-value=5.3 Score=44.23 Aligned_cols=53 Identities=26% Similarity=0.527 Sum_probs=36.7
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCC
Q 002963 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (862)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~ 358 (862)
.|+.|.|+|||+ +...| .+|=+|+|+-+|...|+.++...+ .| .--++|.|+.
T Consensus 7 AViPaAGlGTRf-LPATK---aiPKEMLPIvdKP~IqYiVeEa~~--------aG---Ie~i~iVTgr 59 (291)
T COG1210 7 AVIPAAGLGTRF-LPATK---AIPKEMLPIVDKPLIQYIVEEAVA--------AG---IEEILIVTGR 59 (291)
T ss_pred EEEEccCccccc-ccccc---cCchhhccccCchhHHHHHHHHHH--------cC---CCEEEEEecC
Confidence 467899999999 43333 234444444679999999997655 34 4567888887
No 100
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=73.09 E-value=2.5 Score=44.57 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=43.2
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
.|+||-|+|||+- ++-||+ ++.| .|+.+.+.++++++.. | .--+.|.|.- ..+--
T Consensus 3 AIIlAAG~gsR~~plT~~tpK~--LlkV-----~g~plIErqI~~L~e~--------g---I~dI~IVvGY----lkE~F 60 (231)
T COG4750 3 AIILAAGLGSRFVPLTQSTPKS--LLKV-----NGEPLIERQIEQLREA--------G---IDDITIVVGY----LKEQF 60 (231)
T ss_pred eEEEecccccccccccccCChH--HHHh-----cCcccHHHHHHHHHHC--------C---CceEEEEeee----hHHHH
Confidence 5789999999975 688998 8877 6888999888887653 2 3345666765 23445
Q ss_pred HHHHH
Q 002963 368 SLCER 372 (862)
Q Consensus 368 ~fle~ 372 (862)
+||++
T Consensus 61 eYLkd 65 (231)
T COG4750 61 EYLKD 65 (231)
T ss_pred HHHHH
Confidence 56665
No 101
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=71.36 E-value=4.7 Score=42.62 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=33.8
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (862)
+++.|+||-|.|+||| .+|- ++|+ .|+++....+++.+.
T Consensus 5 ~v~~VvLAAGrssRmG--~~Kl--Lap~-----~g~plv~~~~~~a~~ 43 (199)
T COG2068 5 TVAAVVLAAGRSSRMG--QPKL--LAPL-----DGKPLVRASAETALS 43 (199)
T ss_pred ceEEEEEcccccccCC--Ccce--eccc-----CCCcHHHHHHHHHHh
Confidence 7899999999999999 7887 6654 899999999987765
No 102
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=54.56 E-value=57 Score=38.66 Aligned_cols=80 Identities=13% Similarity=0.195 Sum_probs=58.8
Q ss_pred cccceEEEeeeEEeeCc---eeeecCCCccccccceeeeEEEEEEecCceeEeeceeEecCeEEEecCC----eeEEEee
Q 002963 750 YRCGRCKLNNVKVLNKG---IDWDCGDNTYWKHDVQWFEALKVILHGNAEFEASDVTLQGNHVFEVPDG----HKLKITS 822 (862)
Q Consensus 750 ~~~g~~~~~~~~V~N~G---~~~~~~~~~~w~~~~~r~e~~~i~~~g~~ef~a~~v~~~g~~~~~vp~g----~~~~~~~ 822 (862)
..|-+++|+|.+++|-| +..+.++...-.+.+.-.....|++ |+++++.++||++....|+ +|+.+-+
T Consensus 141 ~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~l-----w~S~g~~V~~N~I~g~RD~gi~i~r~~~~~ 215 (455)
T TIGR03808 141 QGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVS-----FDALGLIVARNTIIGANDNGIEILRSAIGD 215 (455)
T ss_pred ccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEE-----eccCCCEEECCEEEccCCCCeEEEEeeecC
Confidence 66778999999999885 5555566666677777777777654 8999999999999999998 5655544
Q ss_pred CCCceEEEeccccc
Q 002963 823 GNSGLVVQLDPIEQ 836 (862)
Q Consensus 823 ~~~~~~~~~~~~~~ 836 (862)
|+ -.+.-.+|+.
T Consensus 216 dg--~~v~~n~i~~ 227 (455)
T TIGR03808 216 DG--TIVTDNRIED 227 (455)
T ss_pred Cc--ceeecccccc
Confidence 43 3444445544
No 103
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=35.45 E-value=97 Score=28.95 Aligned_cols=67 Identities=18% Similarity=0.346 Sum_probs=47.1
Q ss_pred eeeeEEEEEEecCceeEeeceeEecCeEEEecCCeeEEEeeCCCce---EEEeccccccccCCCcceEEEEEeC
Q 002963 782 QWFEALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLKITSGNSGL---VVQLDPIEQNMMDTGSWHWNYKING 852 (862)
Q Consensus 782 ~r~e~~~i~~~g~~ef~a~~v~~~g~~~~~vp~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~w~w~y~~~~ 852 (862)
.-+|++-.+++|.+++......+.-.++....+|-.++++.++.+. ...=.||.+ .--|+|.|-|+.
T Consensus 18 ~~~~~~iyv~~G~~~v~~~~~~~~~~~~~~l~~g~~i~~~a~~~~a~~lll~GePl~E----pi~~~GpFVmnt 87 (104)
T PF05726_consen 18 PGHNAFIYVLEGSVEVGGEEDPLEAGQLVVLEDGDEIELTAGEEGARFLLLGGEPLNE----PIVQYGPFVMNT 87 (104)
T ss_dssp TT-EEEEEEEESEEEETTTTEEEETTEEEEE-SECEEEEEESSSSEEEEEEEE----S------EEETTEEESS
T ss_pred CCCEEEEEEEECcEEECCCcceECCCcEEEECCCceEEEEECCCCcEEEEEEccCCCC----CEEEECCcccCC
Confidence 4578899999999988777777888888888899999998774544 444578876 467899999864
No 104
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=29.43 E-value=1.9e+02 Score=29.79 Aligned_cols=66 Identities=21% Similarity=0.277 Sum_probs=45.3
Q ss_pred eeeeEEEEeccCCCCccccCCCccc----eecccccceEEEeeeEEe----eCceeeecCCC---------------ccc
Q 002963 721 LDGSLIIVAENVMGSTRIADNGESI----LQYGYRCGRCKLNNVKVL----NKGIDWDCGDN---------------TYW 777 (862)
Q Consensus 721 ldGslvI~a~~~~g~~~~~~~g~~i----~~~~~~~g~~~~~~~~V~----N~G~~~~~~~~---------------~~w 777 (862)
+-|.+.|.+.|+ -|| ++| .+-++++++- ++|....+.+. .||
T Consensus 52 iV~t~KiyNPN~----------fPipVtgl~y-----~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l~~d~~~~ke~w 116 (161)
T COG5608 52 IVGTLKIYNPNP----------FPIPVTGLQY-----AVYMNDIKIGEGEILKGTTVPPNSRETVDVPLRLDNSKIKEWW 116 (161)
T ss_pred EEEEEEecCCCC----------cceeeeceEE-----EEEEcceEeeccccccceEECCCCeEEEEEEEEEehHHHHHHH
Confidence 667788877764 233 233 3445555443 77777777665 389
Q ss_pred cccceeeeEEEEEEecCceeEeec
Q 002963 778 KHDVQWFEALKVILHGNAEFEASD 801 (862)
Q Consensus 778 ~~~~~r~e~~~i~~~g~~ef~a~~ 801 (862)
+-.+++.|--.|...+++++++.-
T Consensus 117 ~~hi~ngErs~Ir~~i~~~v~vg~ 140 (161)
T COG5608 117 VTHIENGERSTIRVRIKGVVKVGG 140 (161)
T ss_pred HHHhhccCcccEEEEEEEEEEEcc
Confidence 989999999888888888887643
No 105
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=29.33 E-value=78 Score=34.46 Aligned_cols=67 Identities=15% Similarity=0.284 Sum_probs=48.0
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchHHHH
Q 002963 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (862)
Q Consensus 288 kvAvVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The~T~ 367 (862)
++++|+=| |||.+.-+|-.++|+ -+.++++++++++++.. +.=-++|-||+. .+++...
T Consensus 3 ~I~~IiQA-----RmgStRLpgKvLlpL-----~~~pmI~~~lervrks~----------~~d~ivvATS~~-~~d~~l~ 61 (241)
T COG1861 3 MILVIIQA-----RMGSTRLPGKVLLPL-----GGEPMIEYQLERVRKSK----------DLDKIVVATSDK-EEDDALE 61 (241)
T ss_pred cEEEEeee-----cccCccCCcchhhhc-----CCCchHHHHHHHHhccc----------cccceEEEecCC-cchhHHH
Confidence 44555544 777776555326655 67889999999988754 233589999994 7888889
Q ss_pred HHHHHhCC
Q 002963 368 SLCERLRW 375 (862)
Q Consensus 368 ~fle~n~y 375 (862)
.++.++.+
T Consensus 62 ~~~~~~G~ 69 (241)
T COG1861 62 EVCRSHGF 69 (241)
T ss_pred HHHHHcCe
Confidence 99998775
No 106
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=25.15 E-value=2.3e+02 Score=31.28 Aligned_cols=61 Identities=23% Similarity=0.249 Sum_probs=42.2
Q ss_pred ccccccceeeeEEEEEEecCceeEee---ceeEecC--------eEEEecCCeeEEEeeCCC-ceEEEecccc
Q 002963 775 TYWKHDVQWFEALKVILHGNAEFEAS---DVTLQGN--------HVFEVPDGHKLKITSGNS-GLVVQLDPIE 835 (862)
Q Consensus 775 ~~w~~~~~r~e~~~i~~~g~~ef~a~---~v~~~g~--------~~~~vp~g~~~~~~~~~~-~~~~~~~~~~ 835 (862)
.-|+.+..|+|.+-|.|.|.++++.. --.+.+- .+.=||-|.+.+|+...+ .+.+.-+|-+
T Consensus 38 ~~~~~~~~~~E~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~ae~~~~sapa~ 110 (261)
T PF04962_consen 38 ESLEFELERRELGVVNLGGKATVTVDGEEFYELGGRESVFDGPPDALYVPRGTKVVIFASTDAEFAVCSAPAH 110 (261)
T ss_dssp HCCCCCCCSEEEEEEEESSSEEEEETTEEEEEE-TTSSGGGS--EEEEE-TT--EEEEESSTEEEEEEEEE-S
T ss_pred CEEeccCCCcEEEEEEeCCEEEEEeCCceEEEecccccccCCCCcEEEeCCCCeEEEEEcCCCEEEEEccccC
Confidence 35777799999999999999999984 3445554 788899999999987533 5555444443
No 107
>PLN03014 carbonic anhydrase
Probab=21.83 E-value=1.2e+02 Score=34.95 Aligned_cols=13 Identities=38% Similarity=0.544 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHH
Q 002963 80 FHQEISRLKKLRS 92 (862)
Q Consensus 80 ~~~~~~~l~~~~~ 92 (862)
++..|++|+.|++
T Consensus 83 ~~~~~~~~~~~~~ 95 (347)
T PLN03014 83 YDEAIEALKKLLI 95 (347)
T ss_pred HHHHHHHHHhhcc
Confidence 6667777777764
No 108
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=21.39 E-value=8.6e+02 Score=28.04 Aligned_cols=185 Identities=13% Similarity=0.074 Sum_probs=104.1
Q ss_pred EEEEEecCC-ccccC---CCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhhhhcCCcccceEEEecCCCCCchH
Q 002963 289 LGEIYPLGG-SADRL---GLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (862)
Q Consensus 289 vAvVlLAGG-lGTRL---G~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G~~~~IPl~IMTS~~k~The 364 (862)
.|||++-|= -|||. -++-||- ++|+ -|....+..+....++..|+ =+++.-|. -.+
T Consensus 4 ~AVIlVGGP~kGTRFRPLSf~vPKP--Lfpi-----aG~pmI~Hhi~ac~qi~~l~-----------eI~LvGFy--~e~ 63 (407)
T KOG1460|consen 4 KAVILVGGPQKGTRFRPLSFNVPKP--LFPI-----AGVPMIHHHISACKQISGLA-----------EILLVGFY--EER 63 (407)
T ss_pred EEEEEecCCCCCccccccccCCCCC--cccc-----CCcchhhhhHHHHhcccchh-----------heeEEecc--cch
Confidence 455555443 39994 5899998 9987 46778887777666554332 12334452 455
Q ss_pred HHHHHHHHhC-CCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEE
Q 002963 365 RITSLCERLR-WFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVR 443 (862)
Q Consensus 365 ~T~~fle~n~-yFGl~~~qV~~F~Q~~vP~v~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~V~ 443 (862)
.-..|+.+-. .|- +|. ++--+.+|.|-||-...+. |...+---..+||.
T Consensus 64 ~f~~fis~~~~e~~-------------~pv------------rYL~E~~plGtaGgLyhFr-----dqIl~g~ps~vFvl 113 (407)
T KOG1460|consen 64 VFTDFISAIQQEFK-------------VPV------------RYLREDNPLGTAGGLYHFR-----DQILAGSPSAVFVL 113 (407)
T ss_pred HHHHHHHHHHhhcc-------------cch------------hhhccCCCCCcccceeehh-----hHHhcCCCceEEEE
Confidence 5566666532 221 121 2233568888766443333 44555667889999
Q ss_pred eCCCccccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCC
Q 002963 444 QVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSN 523 (862)
Q Consensus 444 qvDN~La~vDP~il~flG~~~~~~~~~~~~~vvRK~~~~E~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg 523 (862)
|.|=...+.=+ .++-.+...+.-+.+.+..-....+..-|.|++. -..| .++-|.|=|.--. +|
T Consensus 114 naDVCcsfPl~---~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~d-P~t~------evlHYveKPsTfv-----Sd- 177 (407)
T KOG1460|consen 114 NADVCCSFPLQ---DMLEAHRRYGGIGTLLVTKVSREQASNFGCLVED-PSTG------EVLHYVEKPSTFV-----SD- 177 (407)
T ss_pred ecceecCCcHH---HHHHHHhhcCCceEEEEEEecHhHhhccCeeeec-CCcC------ceEEeecCcchhh-----hc-
Confidence 99877777522 2255666666666666521111123356777651 1223 3667877654321 10
Q ss_pred CccccCccceeeeEEeHHHHHh
Q 002963 524 GLQADFPANTNILYVDLASAEL 545 (862)
Q Consensus 524 ~l~S~F~~Ninn~~fsL~~l~~ 545 (862)
..|...+.|+-+.++.
T Consensus 178 ------~InCGvYlF~~eif~~ 193 (407)
T KOG1460|consen 178 ------IINCGVYLFTPEIFNA 193 (407)
T ss_pred ------ccceeEEEecHHHHHH
Confidence 1266677777765544
No 109
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=20.93 E-value=1.5e+02 Score=33.29 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=30.8
Q ss_pred eceeEecCeEEEecCCeeEEEeeCCCceEEEecccccc
Q 002963 800 SDVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQN 837 (862)
Q Consensus 800 ~~v~~~g~~~~~vp~g~~~~~~~~~~~~~~~~~~~~~~ 837 (862)
.+..++.+++|..|.|+.|.+..++.+.+..+++-.+.
T Consensus 225 ~~~~~~~~~vy~~p~~~~~~~~~~~~~~~~~l~~~~~~ 262 (354)
T PRK00742 225 DGERLKPGHAYIAPGGKHMMVARSGANYRIKLDDGPPV 262 (354)
T ss_pred CCCEeeCCEEEEcCCCCEEEEEecCCceEEEECCCCCc
Confidence 35678899999999999999987666777778776553
No 110
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=20.06 E-value=9.5e+02 Score=28.89 Aligned_cols=97 Identities=12% Similarity=0.113 Sum_probs=53.0
Q ss_pred eEEEeeeEEeeCceeeecCCCccccccceeeeEEEEEEecCc----eeEeeceeEecCeEEEecCCeeEEEeeCCCceEE
Q 002963 754 RCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHGNA----EFEASDVTLQGNHVFEVPDGHKLKITSGNSGLVV 829 (862)
Q Consensus 754 ~~~~~~~~V~N~G~~~~~~~~~~w~~~~~r~e~~~i~~~g~~----ef~a~~v~~~g~~~~~vp~g~~~~~~~~~~~~~~ 829 (862)
.+.|++++|+|-|.+|...+-..+=....+-.--.+.|.|++ -++..++++.+|.+..-++-. +. .-+-.++.+
T Consensus 116 nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~-I~-lw~S~g~~V 193 (455)
T TIGR03808 116 GIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTA-IV-SFDALGLIV 193 (455)
T ss_pred CeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccce-EE-EeccCCCEE
Confidence 579999999999998874443322222222222222335554 223333556666555554433 22 123337777
Q ss_pred EeccccccccCCCc-----ceEEEEEeCCeEE
Q 002963 830 QLDPIEQNMMDTGS-----WHWNYKINGSHIV 856 (862)
Q Consensus 830 ~~~~~~~~~~~~~~-----w~w~y~~~~~~~~ 856 (862)
+=+-|.. ... ++|.|.-|+.-|.
T Consensus 194 ~~N~I~g----~RD~gi~i~r~~~~~dg~~v~ 221 (455)
T TIGR03808 194 ARNTIIG----ANDNGIEILRSAIGDDGTIVT 221 (455)
T ss_pred ECCEEEc----cCCCCeEEEEeeecCCcceee
Confidence 7777765 355 6777766665443
Done!